before coming back

Dockerfile

@@ -13,7 +13,7 @@
 # Base image #
 ##############
 # Adds rstudio server, tiyverse, devtools to rocker/cuda
-FROM misantamaria/dvats-rstudio:0
+FROM misantamaria/dvats-rstudio:rocker-ml4.2
 
 SHELL [ "/bin/bash", "--login", "-c" ]
 
@@ -39,9 +39,9 @@ ENV USER_NAME=$USER_NAME \
     WANDB_PROJECT=$WANDB_PROJECT
 
 RUN echo "--> Setup ENV variables"
-ENV RETICULATE_PYTHON_ENV=/home/env \
-    ROOT=TRUE \
-    RETICULATE_MINICONDA_PATH=/home//miniconda \
+#ENV RETICULATE_PYTHON_ENV=/home/env \
+ENV ROOT=TRUE \
+    #RETICULATE_MINICONDA_PATH=/home/miniconda3 \
      #1,2,3... En la barata solo tienes 1 :)
     CUDA_VISIBLE_DEVICES=0\
     ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES\
@@ -67,6 +67,7 @@ COPY --chown=${USER_ID}:${GROUP_ID} ../dvats $DVATSDIR
 
 
 RUN  chown ${USER_ID}:${GROUP_ID} /var/run/s6
+RUN  chown ${USER_ID}:${GROUP_ID} /home/
 # Install deepvats
 
 RUN echo "--> Go!"
@@ -79,6 +80,7 @@ ENV RSTUDIO_PORT=$RSTUDIO_PORT
 ENV APP="app"
 
 RUN ls -la ${APPDIR}
+RUN echo "RETICULATE_MINICONDA_PATH" $RETICULATE_MINICONDA_PATH
 RUN mamba install -c conda-forge python-kaleido
 #CMD [ "R", "-e", "shiny::runApp(host='0.0.0.0'", "port="${RSTUDIO_PORT}, "appDir = '/home/${USER_NAME}/app')" ]
 #CMD [ "R -e shiny::runApp(host='0.0.0.0', port=Sys.getenv('RSTUDIO_PORT'), appDir = Sys.getenv('APPDIR'))" ]

r_shiny_app/global.R

@@ -49,11 +49,17 @@ if(torch$cuda$is_available()){
 #hdbscan = import("hdbscan")
 #dvats = import_from_path("dvats.all", path=paste0(Sys.getenv("HOME")))
 ############Just in case. Trying to get why get_enc_embs gets freezed
+
 # Python dependencies
+print("--> py dependences | Tsai")
 tsai_data = reticulate::import("tsai.data.all")
+print("--> py dependences | Wandb")
 wandb = reticulate::import("wandb")
+print("--> py dependences | PANDAS")
 pd = reticulate::import("pandas")
+print("--> py dependences | Hdbscan")
 hdbscan = reticulate::import("hdbscan")
+print("--> py dependences | Dvats")
 dvats = reticulate::import_from_path("dvats.all", path=paste0(Sys.getenv("HOME")))