Tried to add volumes and vars to Dockerfile

Dockerfile

@@ -5,15 +5,57 @@
 # Set up a jupyter-lab for  #
 # developing using deepvats #
 #############################
+
 ##############
 # Base image #
 ##############
-
 # Adds rstudio server, tiyverse, devtools to rocker/cuda
 FROM rocker/ml:4.2
 
 SHELL [ "/bin/bash", "--login", "-c" ]
 
+###############
+# Ensure vars #
+###############
+ARG USER_NAME
+ARG USER_ID
+ARG GROUP_ID
+ARG WANDB_API_KEY
+ARG WANDB_ENTITY
+ARG WANDB_PROJECT
+ARG GH_TOKEN
+
+
+ENV USER_NAME=$USER_NAME
+ENV USER_ID=$USER_ID
+ENV GROUP_ID=$GROUP_ID
+ENV WANDB_ENTITY=$WANDB_ENTITY
+ENV WANDB_API_KEY=$WANDB_API_KEY
+ENV RETICULATE_PYTHON_ENV=/home/${USER_NAME}/env
+ENV RETICULATE_MINICONDA_PATH=/home/${USER_NAME}/miniconda
+ENV WANDB_PROJECT=$WANDB_PROJECT
+ENV ROOT=TRUE
+ENV CUDA_VISIBLE_DEVICES=0,1,2
+ENV GH_TOKEN=$ghtoken
+ENV ENV_VARS=WANDB_ENTITY,WANDB_PROJECT,USER_NAME,USER_ID,GROUP_ID,PASSWORD,ROOT,CUDA_VISIBLE_DEVICES
+
+ENV HOME /home/${USER_NAME}
+
+###########
+# Volumes #
+###########
+
+
+RUN echo ${HOME}
+RUN echo ${USER_NAME}"|"${USER_ID}"|"${GROUP_ID}
+COPY --chown=${USER_ID}:${GROUP_ID} ../r_shiny_app /$HOME/app
+COPY --chown=${USER_ID}:${GROUP_ID} ${LOCAL_DATA_PATH} /$HOME/data/
+COPY --chown=${USER_ID}:${GROUP_ID} ../dvats ${HOME}/dvats
+COPY --chown=${USER_ID}:${GROUP_ID} ../lib /${HOME}/lib
+
+
+
+
 RUN apt-key adv --keyserver keyserver.ubuntu.com --recv-keys A4B469963BF863CC 
 RUN apt-get update
 RUN apt-get install -y python3-pip
@@ -22,7 +64,7 @@ RUN apt-get install -y python3-venv libxt-dev
 ## Install R packages
 
 #COPY docker/DESCRIPTION /tmp/
-COPY --chown=${UID}:${GID} docker/DESCRIPTION /tmp/
+COPY --chown=${USER_ID}:${GROUP_ID} docker/DESCRIPTION /tmp/
 
 RUN ls -la /tmp/ && sleep 5
 
@@ -38,7 +80,7 @@ RUN R -e "devtools::install_deps('/tmp/', dependencies = TRUE)"
 #RUN R -e "install.packages('reticulate')"
 
 
-ENV HOME /home/
+
 ENV ENV_PREFIX $HOME/env
 
 RUN echo "---> Make sudo & setup sudoers"