misantamaria commited on
Commit
f8d6c41
1 Parent(s): 5da5fb6

Echos added para intentar ver dónde está exactamente el error del permiso

Browse files
Files changed (2) hide show
  1. Dockerfile +3 -2
  2. entrypoint-rstudio.sh +10 -0
Dockerfile CHANGED
@@ -81,6 +81,7 @@ ENTRYPOINT [ "/usr/local/bin/entrypoint-rstudio.sh" ]
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  # Rewrite the miniconda path environment in case it has been redefined in the compose file
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  RUN echo "RETICULATE_MINICONDA_PATH=${RETICULATE_MINICONDA_PATH}" >> ${HOME}/.Renviron
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-
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- # make non-activate conda commands available
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  ENV PATH=${RETICULATE_MINICONDA_PATH}/bin:${PATH}
 
 
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  # Rewrite the miniconda path environment in case it has been redefined in the compose file
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  RUN echo "RETICULATE_MINICONDA_PATH=${RETICULATE_MINICONDA_PATH}" >> ${HOME}/.Renviron
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+ echo "---> Make non-activate conda commands available"
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+ RUN # make non-activate conda commands available
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  ENV PATH=${RETICULATE_MINICONDA_PATH}/bin:${PATH}
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+ RUN echo "--> Go!"
entrypoint-rstudio.sh CHANGED
@@ -6,13 +6,21 @@ gid=$(id -g)
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  echo "uid $uid gid $gid"
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  echo ". ${HOME}/miniconda3/etc/profile.d/conda.sh" >> ${HOME}/.bashrc
 
 
 
 
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  # Make bash automatically activate the conda environment
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  echo "conda activate ${ENV_PREFIX}" >> ~/.bashrc
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  #echo "export WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.bashrc
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  # echo "WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.Renviron
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  # Define an array of environment variable names from the ENV_VARS Compose variable
 
 
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  IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"
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  echo "ENV_VAR_NAMES=${ENV_VAR_NAMES[@]}"
@@ -23,8 +31,10 @@ for ENV_VAR_NAME in "${ENV_VAR_NAMES[@]}"; do
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  echo "$ENV_VAR_NAME=$ENV_VAR_VALUE" >> ${HOME}/.Renviron
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  done
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  ulimit -s 16384
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  # start rstudio server
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  /init
 
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  exec "$@"
 
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  echo "uid $uid gid $gid"
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+ echo "--> Setup miniconda3"
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+
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  echo ". ${HOME}/miniconda3/etc/profile.d/conda.sh" >> ${HOME}/.bashrc
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+
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+
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+ echo "--> Conda activate"
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+
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  # Make bash automatically activate the conda environment
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  echo "conda activate ${ENV_PREFIX}" >> ~/.bashrc
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  #echo "export WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.bashrc
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  # echo "WANDB_ENTITY=${WANDB_ENTITY:-default}" >> ${HOME}/.Renviron
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  # Define an array of environment variable names from the ENV_VARS Compose variable
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+
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+ echo "---> Setup variables"
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  IFS=',' read -ra ENV_VAR_NAMES <<< "$ENV_VARS"
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  echo "ENV_VAR_NAMES=${ENV_VAR_NAMES[@]}"
 
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  echo "$ENV_VAR_NAME=$ENV_VAR_VALUE" >> ${HOME}/.Renviron
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  done
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+ echo "---> Ensure ulimit"
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  ulimit -s 16384
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  # start rstudio server
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  /init
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+ echo "---> Go!"
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  exec "$@"