API

• dscript.commands
  • dscript.commands.embed
  • dscript.commands.train
  • dscript.commands.eval
  • dscript.commands.predict
• dscript.models
  • dscript.models.embedding
  • dscript.models.contact
  • dscript.models.interaction

dscript.alphabets

dscript.fasta

dscript.fasta.parse(f, comment='#')

Parse a file in .fasta format.

Parameters

• f (_io.TextIOWrapper) – Input file object

• comment (str) – Character used for comments

Returns

names, sequence

Return type

list[str], list[str]

dscript.fasta.parse_directory(directory, extension='.seq')

Parse all files in a directory ending with extension.

Parameters

• directory (str) – Input directory

• extension (str) – Extension of all files to read in

Returns

names, sequence

Return type

list[str], list[str]

dscript.fasta.write(nam, seq, f)

Write a file in .fasta format.

Parameters

• nam (list[str]) – List of names

• seq (list[str]) – List of sequences

• f (_io.TextIOWrapper) – Output file object

dscript.language_model

dscript.pretrained

dscript.utils