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wwydmanski
commited on
Commit
•
31ae121
1
Parent(s):
b61d085
Update app.py
Browse files
app.py
CHANGED
@@ -27,7 +27,7 @@ def convert_outputs_to_pdb(outputs):
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return pdbs
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def fold_prot_locally(sequence):
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tokenized_input = tokenizer([sequence], return_tensors="pt", add_special_tokens=False)['input_ids']
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with torch.no_grad():
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output = model(tokenized_input)
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@@ -35,7 +35,7 @@ def fold_prot_locally(sequence):
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return pdb
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tokenizer = AutoTokenizer.from_pretrained("facebook/esmfold_v1")
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model = EsmForProteinFolding.from_pretrained("facebook/esmfold_v1", low_cpu_mem_usage=True)
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iface = gr.Interface(fn=fold_prot_locally, inputs="text", outputs="text")
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iface.launch()
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return pdbs
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def fold_prot_locally(sequence):
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tokenized_input = tokenizer([sequence], return_tensors="pt", add_special_tokens=False)['input_ids'].cuda()
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with torch.no_grad():
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output = model(tokenized_input)
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return pdb
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tokenizer = AutoTokenizer.from_pretrained("facebook/esmfold_v1")
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model = EsmForProteinFolding.from_pretrained("facebook/esmfold_v1", low_cpu_mem_usage=True).cuda().half()
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iface = gr.Interface(fn=fold_prot_locally, inputs="text", outputs="text")
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iface.launch()
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