cer
Browse files- README.md +67 -0
- added_tokens.json +3 -0
- config.json +45 -0
- model.safetensors +3 -0
- runs/Feb27_16-20-43_b93fc8ba8ca9/events.out.tfevents.1709050892.b93fc8ba8ca9.34.1 +3 -0
- special_tokens_map.json +51 -0
- spm.model +3 -0
- tokenizer.json +0 -0
- tokenizer_config.json +62 -0
- training_args.bin +3 -0
README.md
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---
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license: mit
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base_model: Clinical-AI-Apollo/Medical-NER
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tags:
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- generated_from_trainer
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metrics:
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- precision
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- recall
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- f1
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- accuracy
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model-index:
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- name: Medical-NER
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results: []
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---
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<!-- This model card has been generated automatically according to the information the Trainer had access to. You
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should probably proofread and complete it, then remove this comment. -->
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# Medical-NER
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This model is a fine-tuned version of [Clinical-AI-Apollo/Medical-NER](https://huggingface.co/Clinical-AI-Apollo/Medical-NER) on the None dataset.
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It achieves the following results on the evaluation set:
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- Loss: 0.1694
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- Precision: 0.9149
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- Recall: 0.8666
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- F1: 0.8901
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- Accuracy: 0.9427
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## Model description
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More information needed
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## Intended uses & limitations
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More information needed
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## Training and evaluation data
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More information needed
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## Training procedure
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### Training hyperparameters
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The following hyperparameters were used during training:
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- learning_rate: 0.0002
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- train_batch_size: 16
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- eval_batch_size: 16
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- seed: 42
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- optimizer: Adam with betas=(0.9,0.999) and epsilon=1e-08
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- lr_scheduler_type: linear
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- lr_scheduler_warmup_ratio: 0.2
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- num_epochs: 1
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### Training results
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| Training Loss | Epoch | Step | Validation Loss | Precision | Recall | F1 | Accuracy |
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|:-------------:|:-----:|:----:|:---------------:|:---------:|:------:|:------:|:--------:|
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| 0.0013 | 1.0 | 4159 | 0.1694 | 0.9149 | 0.8666 | 0.8901 | 0.9427 |
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### Framework versions
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- Transformers 4.37.0
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- Pytorch 2.1.2
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- Datasets 2.1.0
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- Tokenizers 0.15.1
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added_tokens.json
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{
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"[MASK]": 128000
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}
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config.json
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{
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"_name_or_path": "Clinical-AI-Apollo/Medical-NER",
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"architectures": [
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"DebertaV2ForTokenClassification"
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],
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"attention_probs_dropout_prob": 0.1,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"id2label": {
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"0": "O",
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"1": "B-clinical_entity",
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"2": "I-clinical_entity"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"label2id": {
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"B-clinical_entity": 1,
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"I-clinical_entity": 2,
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"O": 0
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},
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"layer_norm_eps": 1e-07,
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"max_position_embeddings": 512,
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"max_relative_positions": -1,
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"model_type": "deberta-v2",
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"norm_rel_ebd": "layer_norm",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"pad_token_id": 0,
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"pooler_dropout": 0,
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"pooler_hidden_act": "gelu",
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"pooler_hidden_size": 768,
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"pos_att_type": [
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"p2c",
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"c2p"
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],
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"position_biased_input": false,
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"position_buckets": 256,
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"relative_attention": true,
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"share_att_key": true,
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"torch_dtype": "float32",
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"transformers_version": "4.37.0",
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"type_vocab_size": 0,
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"vocab_size": 128100
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}
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model.safetensors
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version https://git-lfs.github.com/spec/v1
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oid sha256:271ea7ec0f1606a8fa5ba5b552c7cd415cf2ef799522188e0008ae51b6da63fa
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size 735359804
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runs/Feb27_16-20-43_b93fc8ba8ca9/events.out.tfevents.1709050892.b93fc8ba8ca9.34.1
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version https://git-lfs.github.com/spec/v1
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oid sha256:80736bbd841c00867509398a46a0d1f83e36c944b2bf77c6edaaf9cd8b2ede5d
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size 6871
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special_tokens_map.json
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{
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"bos_token": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"cls_token": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"eos_token": {
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"content": "[SEP]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"mask_token": {
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"content": "[MASK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"pad_token": {
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"content": "[PAD]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"sep_token": {
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"content": "[SEP]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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"unk_token": {
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"content": "[UNK]",
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"lstrip": false,
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"normalized": true,
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"rstrip": false,
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"single_word": false
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}
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}
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spm.model
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version https://git-lfs.github.com/spec/v1
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oid sha256:c679fbf93643d19aab7ee10c0b99e460bdbc02fedf34b92b05af343b4af586fd
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size 2464616
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tokenizer.json
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The diff for this file is too large to render.
See raw diff
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tokenizer_config.json
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{
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"added_tokens_decoder": {
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"0": {
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"content": "[PAD]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"1": {
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"content": "[CLS]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"2": {
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"content": "[SEP]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"3": {
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"content": "[UNK]",
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"lstrip": false,
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"normalized": true,
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"rstrip": false,
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"single_word": false,
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"special": true
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},
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"128000": {
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"content": "[MASK]",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false,
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"special": true
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}
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},
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"bos_token": "[CLS]",
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"clean_up_tokenization_spaces": true,
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"cls_token": "[CLS]",
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"do_lower_case": false,
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"eos_token": "[SEP]",
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"mask_token": "[MASK]",
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"max_length": 512,
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"model_max_length": 512,
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"pad_token": "[PAD]",
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"sep_token": "[SEP]",
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"sp_model_kwargs": {},
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"split_by_punct": false,
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"stride": 0,
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"tokenizer_class": "DebertaV2Tokenizer",
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"truncation_side": "right",
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"truncation_strategy": "longest_first",
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"unk_token": "[UNK]",
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"vocab_type": "spm"
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}
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training_args.bin
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version https://git-lfs.github.com/spec/v1
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oid sha256:a6f2e4ff603140939ee1d976f3f0330460836d8768854f8d9332b4958e87457f
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size 4728
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