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#pragma once |
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#include "numpy.h" |
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#if defined(_MSC_VER) |
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# pragma warning(push) |
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# pragma warning(disable : 4127) |
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# pragma warning(disable : 5054) |
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#endif |
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#include <Eigen/Core> |
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#include <Eigen/SparseCore> |
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#if defined(_MSC_VER) |
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# pragma warning(pop) |
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#endif |
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static_assert(EIGEN_VERSION_AT_LEAST(3, 2, 7), |
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"Eigen support in pybind11 requires Eigen >= 3.2.7"); |
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PYBIND11_NAMESPACE_BEGIN(PYBIND11_NAMESPACE) |
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using EigenDStride = Eigen::Stride<Eigen::Dynamic, Eigen::Dynamic>; |
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template <typename MatrixType> |
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using EigenDRef = Eigen::Ref<MatrixType, 0, EigenDStride>; |
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template <typename MatrixType> |
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using EigenDMap = Eigen::Map<MatrixType, 0, EigenDStride>; |
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PYBIND11_NAMESPACE_BEGIN(detail) |
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#if EIGEN_VERSION_AT_LEAST(3, 3, 0) |
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using EigenIndex = Eigen::Index; |
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template <typename Scalar, int Flags, typename StorageIndex> |
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using EigenMapSparseMatrix = Eigen::Map<Eigen::SparseMatrix<Scalar, Flags, StorageIndex>>; |
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#else |
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using EigenIndex = EIGEN_DEFAULT_DENSE_INDEX_TYPE; |
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template <typename Scalar, int Flags, typename StorageIndex> |
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using EigenMapSparseMatrix = Eigen::MappedSparseMatrix<Scalar, Flags, StorageIndex>; |
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#endif |
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template <typename T> |
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using is_eigen_dense_map = all_of<is_template_base_of<Eigen::DenseBase, T>, |
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std::is_base_of<Eigen::MapBase<T, Eigen::ReadOnlyAccessors>, T>>; |
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template <typename T> |
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using is_eigen_mutable_map = std::is_base_of<Eigen::MapBase<T, Eigen::WriteAccessors>, T>; |
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template <typename T> |
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using is_eigen_dense_plain |
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= all_of<negation<is_eigen_dense_map<T>>, is_template_base_of<Eigen::PlainObjectBase, T>>; |
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template <typename T> |
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using is_eigen_sparse = is_template_base_of<Eigen::SparseMatrixBase, T>; |
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template <typename T> |
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using is_eigen_other |
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= all_of<is_template_base_of<Eigen::EigenBase, T>, |
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negation<any_of<is_eigen_dense_map<T>, is_eigen_dense_plain<T>, is_eigen_sparse<T>>>>; |
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template <bool EigenRowMajor> |
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struct EigenConformable { |
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bool conformable = false; |
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EigenIndex rows = 0, cols = 0; |
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EigenDStride stride{0, 0}; |
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bool negativestrides = false; |
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EigenConformable(bool fits = false) : conformable{fits} {} |
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EigenConformable(EigenIndex r, EigenIndex c, EigenIndex rstride, EigenIndex cstride) |
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: conformable{true}, rows{r}, cols{c}, |
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stride{EigenRowMajor ? (rstride > 0 ? rstride : 0) |
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: (cstride > 0 ? cstride : 0) , |
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EigenRowMajor ? (cstride > 0 ? cstride : 0) |
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: (rstride > 0 ? rstride : 0) }, |
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negativestrides{rstride < 0 || cstride < 0} {} |
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EigenConformable(EigenIndex r, EigenIndex c, EigenIndex stride) |
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: EigenConformable(r, c, r == 1 ? c * stride : stride, c == 1 ? r : r * stride) {} |
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template <typename props> |
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bool stride_compatible() const { |
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if (negativestrides) { |
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return false; |
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} |
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if (rows == 0 || cols == 0) { |
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return true; |
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} |
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return (props::inner_stride == Eigen::Dynamic || props::inner_stride == stride.inner() |
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|| (EigenRowMajor ? cols : rows) == 1) |
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&& (props::outer_stride == Eigen::Dynamic || props::outer_stride == stride.outer() |
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|| (EigenRowMajor ? rows : cols) == 1); |
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} |
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operator bool() const { return conformable; } |
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}; |
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template <typename Type> |
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struct eigen_extract_stride { |
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using type = Type; |
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}; |
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template <typename PlainObjectType, int MapOptions, typename StrideType> |
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struct eigen_extract_stride<Eigen::Map<PlainObjectType, MapOptions, StrideType>> { |
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using type = StrideType; |
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}; |
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template <typename PlainObjectType, int Options, typename StrideType> |
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struct eigen_extract_stride<Eigen::Ref<PlainObjectType, Options, StrideType>> { |
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using type = StrideType; |
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}; |
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template <typename Type_> |
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struct EigenProps { |
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using Type = Type_; |
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using Scalar = typename Type::Scalar; |
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using StrideType = typename eigen_extract_stride<Type>::type; |
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static constexpr EigenIndex rows = Type::RowsAtCompileTime, cols = Type::ColsAtCompileTime, |
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size = Type::SizeAtCompileTime; |
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static constexpr bool row_major = Type::IsRowMajor, |
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vector |
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= Type::IsVectorAtCompileTime, |
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fixed_rows = rows != Eigen::Dynamic, fixed_cols = cols != Eigen::Dynamic, |
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fixed = size != Eigen::Dynamic, |
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dynamic = !fixed_rows && !fixed_cols; |
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template <EigenIndex i, EigenIndex ifzero> |
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using if_zero = std::integral_constant<EigenIndex, i == 0 ? ifzero : i>; |
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static constexpr EigenIndex inner_stride |
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= if_zero<StrideType::InnerStrideAtCompileTime, 1>::value, |
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outer_stride = if_zero < StrideType::OuterStrideAtCompileTime, |
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vector ? size |
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: row_major ? cols |
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: rows > ::value; |
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static constexpr bool dynamic_stride |
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= inner_stride == Eigen::Dynamic && outer_stride == Eigen::Dynamic; |
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static constexpr bool requires_row_major |
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= !dynamic_stride && !vector && (row_major ? inner_stride : outer_stride) == 1; |
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static constexpr bool requires_col_major |
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= !dynamic_stride && !vector && (row_major ? outer_stride : inner_stride) == 1; |
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static EigenConformable<row_major> conformable(const array &a) { |
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const auto dims = a.ndim(); |
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if (dims < 1 || dims > 2) { |
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return false; |
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} |
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if (dims == 2) { |
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EigenIndex np_rows = a.shape(0), np_cols = a.shape(1), |
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np_rstride = a.strides(0) / static_cast<ssize_t>(sizeof(Scalar)), |
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np_cstride = a.strides(1) / static_cast<ssize_t>(sizeof(Scalar)); |
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if ((PYBIND11_SILENCE_MSVC_C4127(fixed_rows) && np_rows != rows) |
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|| (PYBIND11_SILENCE_MSVC_C4127(fixed_cols) && np_cols != cols)) { |
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return false; |
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} |
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return {np_rows, np_cols, np_rstride, np_cstride}; |
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} |
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const EigenIndex n = a.shape(0), |
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stride = a.strides(0) / static_cast<ssize_t>(sizeof(Scalar)); |
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if (vector) { |
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if (PYBIND11_SILENCE_MSVC_C4127(fixed) && size != n) { |
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return false; |
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} |
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return {rows == 1 ? 1 : n, cols == 1 ? 1 : n, stride}; |
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} |
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if (fixed) { |
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return false; |
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} |
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if (fixed_cols) { |
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if (cols != n) { |
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return false; |
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} |
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return {1, n, stride}; |
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} |
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if (PYBIND11_SILENCE_MSVC_C4127(fixed_rows) && rows != n) { |
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return false; |
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} |
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return {n, 1, stride}; |
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} |
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static constexpr bool show_writeable |
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= is_eigen_dense_map<Type>::value && is_eigen_mutable_map<Type>::value; |
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static constexpr bool show_order = is_eigen_dense_map<Type>::value; |
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static constexpr bool show_c_contiguous = show_order && requires_row_major; |
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static constexpr bool show_f_contiguous |
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= !show_c_contiguous && show_order && requires_col_major; |
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static constexpr auto descriptor |
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= const_name("numpy.ndarray[") + npy_format_descriptor<Scalar>::name + const_name("[") |
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+ const_name<fixed_rows>(const_name<(size_t) rows>(), const_name("m")) + const_name(", ") |
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+ const_name<fixed_cols>(const_name<(size_t) cols>(), const_name("n")) + const_name("]") |
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+ |
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const_name<show_writeable>(", flags.writeable", "") |
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+ const_name<show_c_contiguous>(", flags.c_contiguous", "") |
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+ const_name<show_f_contiguous>(", flags.f_contiguous", "") + const_name("]"); |
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}; |
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template <typename props> |
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handle |
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eigen_array_cast(typename props::Type const &src, handle base = handle(), bool writeable = true) { |
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constexpr ssize_t elem_size = sizeof(typename props::Scalar); |
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array a; |
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if (props::vector) { |
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a = array({src.size()}, {elem_size * src.innerStride()}, src.data(), base); |
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} else { |
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a = array({src.rows(), src.cols()}, |
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{elem_size * src.rowStride(), elem_size * src.colStride()}, |
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src.data(), |
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base); |
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} |
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if (!writeable) { |
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array_proxy(a.ptr())->flags &= ~detail::npy_api::NPY_ARRAY_WRITEABLE_; |
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} |
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return a.release(); |
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} |
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template <typename props, typename Type> |
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handle eigen_ref_array(Type &src, handle parent = none()) { |
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return eigen_array_cast<props>(src, parent, !std::is_const<Type>::value); |
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} |
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template <typename props, typename Type, typename = enable_if_t<is_eigen_dense_plain<Type>::value>> |
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handle eigen_encapsulate(Type *src) { |
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capsule base(src, [](void *o) { delete static_cast<Type *>(o); }); |
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return eigen_ref_array<props>(*src, base); |
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} |
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template <typename Type> |
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struct type_caster<Type, enable_if_t<is_eigen_dense_plain<Type>::value>> { |
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using Scalar = typename Type::Scalar; |
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using props = EigenProps<Type>; |
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bool load(handle src, bool convert) { |
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if (!convert && !isinstance<array_t<Scalar>>(src)) { |
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return false; |
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} |
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auto buf = array::ensure(src); |
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if (!buf) { |
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return false; |
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} |
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auto dims = buf.ndim(); |
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if (dims < 1 || dims > 2) { |
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return false; |
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} |
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auto fits = props::conformable(buf); |
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if (!fits) { |
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return false; |
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} |
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value = Type(fits.rows, fits.cols); |
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auto ref = reinterpret_steal<array>(eigen_ref_array<props>(value)); |
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if (dims == 1) { |
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ref = ref.squeeze(); |
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} else if (ref.ndim() == 1) { |
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buf = buf.squeeze(); |
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} |
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int result = detail::npy_api::get().PyArray_CopyInto_(ref.ptr(), buf.ptr()); |
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if (result < 0) { |
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PyErr_Clear(); |
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return false; |
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} |
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return true; |
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} |
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private: |
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template <typename CType> |
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static handle cast_impl(CType *src, return_value_policy policy, handle parent) { |
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switch (policy) { |
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case return_value_policy::take_ownership: |
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case return_value_policy::automatic: |
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return eigen_encapsulate<props>(src); |
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case return_value_policy::move: |
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return eigen_encapsulate<props>(new CType(std::move(*src))); |
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case return_value_policy::copy: |
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return eigen_array_cast<props>(*src); |
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case return_value_policy::reference: |
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case return_value_policy::automatic_reference: |
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return eigen_ref_array<props>(*src); |
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case return_value_policy::reference_internal: |
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return eigen_ref_array<props>(*src, parent); |
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default: |
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throw cast_error("unhandled return_value_policy: should not happen!"); |
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}; |
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} |
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public: |
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static handle cast(Type &&src, return_value_policy , handle parent) { |
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return cast_impl(&src, return_value_policy::move, parent); |
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} |
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static handle cast(const Type &&src, return_value_policy , handle parent) { |
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return cast_impl(&src, return_value_policy::move, parent); |
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} |
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static handle cast(Type &src, return_value_policy policy, handle parent) { |
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if (policy == return_value_policy::automatic |
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|| policy == return_value_policy::automatic_reference) { |
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policy = return_value_policy::copy; |
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} |
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return cast_impl(&src, policy, parent); |
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} |
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static handle cast(const Type &src, return_value_policy policy, handle parent) { |
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if (policy == return_value_policy::automatic |
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|| policy == return_value_policy::automatic_reference) { |
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policy = return_value_policy::copy; |
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} |
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return cast(&src, policy, parent); |
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} |
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static handle cast(Type *src, return_value_policy policy, handle parent) { |
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return cast_impl(src, policy, parent); |
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} |
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static handle cast(const Type *src, return_value_policy policy, handle parent) { |
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return cast_impl(src, policy, parent); |
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} |
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static constexpr auto name = props::descriptor; |
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operator Type *() { return &value; } |
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operator Type &() { return value; } |
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operator Type &&() && { return std::move(value); } |
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template <typename T> |
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using cast_op_type = movable_cast_op_type<T>; |
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private: |
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Type value; |
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}; |
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template <typename MapType> |
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struct eigen_map_caster { |
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private: |
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using props = EigenProps<MapType>; |
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public: |
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static handle cast(const MapType &src, return_value_policy policy, handle parent) { |
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switch (policy) { |
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case return_value_policy::copy: |
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return eigen_array_cast<props>(src); |
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case return_value_policy::reference_internal: |
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return eigen_array_cast<props>(src, parent, is_eigen_mutable_map<MapType>::value); |
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case return_value_policy::reference: |
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case return_value_policy::automatic: |
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case return_value_policy::automatic_reference: |
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return eigen_array_cast<props>(src, none(), is_eigen_mutable_map<MapType>::value); |
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default: |
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pybind11_fail("Invalid return_value_policy for Eigen Map/Ref/Block type"); |
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} |
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} |
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static constexpr auto name = props::descriptor; |
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bool load(handle, bool) = delete; |
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operator MapType() = delete; |
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template <typename> |
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using cast_op_type = MapType; |
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}; |
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template <typename Type> |
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struct type_caster<Type, enable_if_t<is_eigen_dense_map<Type>::value>> : eigen_map_caster<Type> {}; |
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template <typename PlainObjectType, typename StrideType> |
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struct type_caster< |
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Eigen::Ref<PlainObjectType, 0, StrideType>, |
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enable_if_t<is_eigen_dense_map<Eigen::Ref<PlainObjectType, 0, StrideType>>::value>> |
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: public eigen_map_caster<Eigen::Ref<PlainObjectType, 0, StrideType>> { |
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private: |
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using Type = Eigen::Ref<PlainObjectType, 0, StrideType>; |
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using props = EigenProps<Type>; |
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using Scalar = typename props::Scalar; |
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using MapType = Eigen::Map<PlainObjectType, 0, StrideType>; |
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using Array |
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= array_t<Scalar, |
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array::forcecast |
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| ((props::row_major ? props::inner_stride : props::outer_stride) == 1 |
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? array::c_style |
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: (props::row_major ? props::outer_stride : props::inner_stride) == 1 |
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? array::f_style |
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: 0)>; |
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static constexpr bool need_writeable = is_eigen_mutable_map<Type>::value; |
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std::unique_ptr<MapType> map; |
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std::unique_ptr<Type> ref; |
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Array copy_or_ref; |
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public: |
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bool load(handle src, bool convert) { |
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bool need_copy = !isinstance<Array>(src); |
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EigenConformable<props::row_major> fits; |
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if (!need_copy) { |
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auto aref = reinterpret_borrow<Array>(src); |
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if (aref && (!need_writeable || aref.writeable())) { |
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fits = props::conformable(aref); |
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if (!fits) { |
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return false; |
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} |
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if (!fits.template stride_compatible<props>()) { |
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need_copy = true; |
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} else { |
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copy_or_ref = std::move(aref); |
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} |
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} else { |
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need_copy = true; |
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} |
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} |
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if (need_copy) { |
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if (!convert || need_writeable) { |
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return false; |
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} |
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Array copy = Array::ensure(src); |
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if (!copy) { |
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return false; |
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} |
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fits = props::conformable(copy); |
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if (!fits || !fits.template stride_compatible<props>()) { |
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return false; |
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} |
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copy_or_ref = std::move(copy); |
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loader_life_support::add_patient(copy_or_ref); |
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} |
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ref.reset(); |
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map.reset(new MapType(data(copy_or_ref), |
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fits.rows, |
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fits.cols, |
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make_stride(fits.stride.outer(), fits.stride.inner()))); |
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ref.reset(new Type(*map)); |
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return true; |
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} |
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operator Type *() { return ref.get(); } |
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operator Type &() { return *ref; } |
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template <typename _T> |
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using cast_op_type = pybind11::detail::cast_op_type<_T>; |
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private: |
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template <typename T = Type, enable_if_t<is_eigen_mutable_map<T>::value, int> = 0> |
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Scalar *data(Array &a) { |
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return a.mutable_data(); |
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} |
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template <typename T = Type, enable_if_t<!is_eigen_mutable_map<T>::value, int> = 0> |
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const Scalar *data(Array &a) { |
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return a.data(); |
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} |
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template <typename S> |
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using stride_ctor_default = bool_constant<S::InnerStrideAtCompileTime != Eigen::Dynamic |
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&& S::OuterStrideAtCompileTime != Eigen::Dynamic |
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&& std::is_default_constructible<S>::value>; |
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template <typename S> |
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using stride_ctor_dual |
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= bool_constant<!stride_ctor_default<S>::value |
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&& std::is_constructible<S, EigenIndex, EigenIndex>::value>; |
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template <typename S> |
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using stride_ctor_outer |
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= bool_constant<!any_of<stride_ctor_default<S>, stride_ctor_dual<S>>::value |
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&& S::OuterStrideAtCompileTime == Eigen::Dynamic |
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&& S::InnerStrideAtCompileTime != Eigen::Dynamic |
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&& std::is_constructible<S, EigenIndex>::value>; |
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template <typename S> |
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using stride_ctor_inner |
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= bool_constant<!any_of<stride_ctor_default<S>, stride_ctor_dual<S>>::value |
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&& S::InnerStrideAtCompileTime == Eigen::Dynamic |
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&& S::OuterStrideAtCompileTime != Eigen::Dynamic |
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&& std::is_constructible<S, EigenIndex>::value>; |
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template <typename S = StrideType, enable_if_t<stride_ctor_default<S>::value, int> = 0> |
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static S make_stride(EigenIndex, EigenIndex) { |
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return S(); |
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} |
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template <typename S = StrideType, enable_if_t<stride_ctor_dual<S>::value, int> = 0> |
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static S make_stride(EigenIndex outer, EigenIndex inner) { |
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return S(outer, inner); |
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} |
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template <typename S = StrideType, enable_if_t<stride_ctor_outer<S>::value, int> = 0> |
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static S make_stride(EigenIndex outer, EigenIndex) { |
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return S(outer); |
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} |
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template <typename S = StrideType, enable_if_t<stride_ctor_inner<S>::value, int> = 0> |
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static S make_stride(EigenIndex, EigenIndex inner) { |
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return S(inner); |
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} |
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}; |
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|
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template <typename Type> |
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struct type_caster<Type, enable_if_t<is_eigen_other<Type>::value>> { |
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protected: |
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using Matrix |
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= Eigen::Matrix<typename Type::Scalar, Type::RowsAtCompileTime, Type::ColsAtCompileTime>; |
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using props = EigenProps<Matrix>; |
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|
|
public: |
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static handle cast(const Type &src, return_value_policy , handle ) { |
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handle h = eigen_encapsulate<props>(new Matrix(src)); |
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return h; |
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} |
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static handle cast(const Type *src, return_value_policy policy, handle parent) { |
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return cast(*src, policy, parent); |
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} |
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|
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static constexpr auto name = props::descriptor; |
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|
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|
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bool load(handle, bool) = delete; |
|
operator Type() = delete; |
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template <typename> |
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using cast_op_type = Type; |
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}; |
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|
|
template <typename Type> |
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struct type_caster<Type, enable_if_t<is_eigen_sparse<Type>::value>> { |
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using Scalar = typename Type::Scalar; |
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using StorageIndex = remove_reference_t<decltype(*std::declval<Type>().outerIndexPtr())>; |
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using Index = typename Type::Index; |
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static constexpr bool rowMajor = Type::IsRowMajor; |
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|
|
bool load(handle src, bool) { |
|
if (!src) { |
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return false; |
|
} |
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|
|
auto obj = reinterpret_borrow<object>(src); |
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object sparse_module = module_::import("scipy.sparse"); |
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object matrix_type = sparse_module.attr(rowMajor ? "csr_matrix" : "csc_matrix"); |
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|
|
if (!type::handle_of(obj).is(matrix_type)) { |
|
try { |
|
obj = matrix_type(obj); |
|
} catch (const error_already_set &) { |
|
return false; |
|
} |
|
} |
|
|
|
auto values = array_t<Scalar>((object) obj.attr("data")); |
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auto innerIndices = array_t<StorageIndex>((object) obj.attr("indices")); |
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auto outerIndices = array_t<StorageIndex>((object) obj.attr("indptr")); |
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auto shape = pybind11::tuple((pybind11::object) obj.attr("shape")); |
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auto nnz = obj.attr("nnz").cast<Index>(); |
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|
|
if (!values || !innerIndices || !outerIndices) { |
|
return false; |
|
} |
|
|
|
value = EigenMapSparseMatrix<Scalar, |
|
Type::Flags &(Eigen::RowMajor | Eigen::ColMajor), |
|
StorageIndex>(shape[0].cast<Index>(), |
|
shape[1].cast<Index>(), |
|
std::move(nnz), |
|
outerIndices.mutable_data(), |
|
innerIndices.mutable_data(), |
|
values.mutable_data()); |
|
|
|
return true; |
|
} |
|
|
|
static handle cast(const Type &src, return_value_policy , handle ) { |
|
const_cast<Type &>(src).makeCompressed(); |
|
|
|
object matrix_type |
|
= module_::import("scipy.sparse").attr(rowMajor ? "csr_matrix" : "csc_matrix"); |
|
|
|
array data(src.nonZeros(), src.valuePtr()); |
|
array outerIndices((rowMajor ? src.rows() : src.cols()) + 1, src.outerIndexPtr()); |
|
array innerIndices(src.nonZeros(), src.innerIndexPtr()); |
|
|
|
return matrix_type(pybind11::make_tuple( |
|
std::move(data), std::move(innerIndices), std::move(outerIndices)), |
|
pybind11::make_tuple(src.rows(), src.cols())) |
|
.release(); |
|
} |
|
|
|
PYBIND11_TYPE_CASTER(Type, |
|
const_name<(Type::IsRowMajor) != 0>("scipy.sparse.csr_matrix[", |
|
"scipy.sparse.csc_matrix[") |
|
+ npy_format_descriptor<Scalar>::name + const_name("]")); |
|
}; |
|
|
|
PYBIND11_NAMESPACE_END(detail) |
|
PYBIND11_NAMESPACE_END(PYBIND11_NAMESPACE) |
|
|