PDBEurope/Bioformer8L-ProteinStructure-NER-v0.1_onnx

Feature	Description
Name	Bioformer8L-ProteinStructure-NER-v0.1_onnx
Default Pipeline	transformer, ner
Components	transformer, ner
Vectors	0 keys, 0 unique vectors (0 dimensions)
Sources	n/a
License	n/a
Author	Melanie Vollmar

Label Scheme

View label scheme (20 labels for 1 components)

Component	Labels
ner	"bond_interaction", "chemical", "complex_assembly", "evidence", "experimental_method", "gene", "mutant", "oligomeric_state", "protein", "protein_state", "protein_type", "ptm", "residue_name", "residue_name_number", "residue_number", "residue_range", "site", "species", "structure_element", "taxonomy_domain"

Scores for entity types

entity type	precision	recall	F1	sample number
"bond_interaction"	0.95	0.88	0.91	39
"chemical"	0.84	0.91	0.88	598
"complex_assembly"	0.82	0.87	0.84	189
"evidence"	0.79	0.90	0.84	420
"experimental_method"	0.82	0.82	0.82	313
"gene"	0.71	0.84	0.77	26
"mutant"	0.85	0.90	0.87	219
"oligomeric_state"	0.92	0.96	0.94	116
"protein"	0.91	0.95	0.93	755
"protein_state"	0.76	0.86	0.81	578
"protein_type"	0.81	0.86	0.81	295
"ptm"	0.70	0.72	0.71	33
"residue_name"	0.87	0.90	0.88	74
"residue_name_number"	0.94	0.98	0.96	270
"residue_number"	0.52	0.92	0.66	55
"residue_range"	0.68	0.77	0.72	40
"site"	0.86	0.90	0.88	250
"species"	0.97	0.97	0.97	74
"structure_element"	0.89	0.92	0.91	756
"taxonomy_domain"	0.99	0.93	0.96	78