Replace all the "k-mer"s with "k_mer"s

#2
by GTCtech - opened
BarcodeMamba-dim384-layer2-k-mer/.hydra/config.yaml CHANGED
@@ -35,7 +35,7 @@ tokenizer:
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  k_mer: 6
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  padding: true
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  padding_side: left
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- name: k-mer
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  stride: ${.k_mer}
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  max_len: ${dataset.max_len}
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  vocab_size: ${eval:4 ** ${.k_mer} + 3}
 
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  k_mer: 6
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  padding: true
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  padding_side: left
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+ name: k_mer
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  stride: ${.k_mer}
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  max_len: ${dataset.max_len}
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  vocab_size: ${eval:4 ** ${.k_mer} + 3}
BarcodeMamba-dim768-layer6-k-mer/.hydra/config.yaml CHANGED
@@ -35,7 +35,7 @@ tokenizer:
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  k_mer: 6
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  padding: true
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  padding_side: left
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- name: k-mer
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  stride: ${.k_mer}
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  max_len: ${dataset.max_len}
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  vocab_size: ${eval:4 ** ${.k_mer} + 3}
 
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  k_mer: 6
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  padding: true
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  padding_side: left
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+ name: k_mer
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  stride: ${.k_mer}
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  max_len: ${dataset.max_len}
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  vocab_size: ${eval:4 ** ${.k_mer} + 3}
README.md CHANGED
@@ -15,10 +15,14 @@ The pretrained models can be used for both taxonomic classification on seen spec
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  # Citation
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  If you find BarcodeMamba useful, please consider citing:
 
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  ```
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  @inproceedings{
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  gao2024barcodemamba,
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  title={BarcodeMamba: State Space Models for Biodiversity Analysis},
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  author={Tiancheng Gao and Graham W.~Taylor},
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  booktitle={{NeurIPS} 2024 Workshop on Foundation Models for Science: Progress, Opportunities, and Challenges},
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- year={2024},
 
 
 
 
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  # Citation
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  If you find BarcodeMamba useful, please consider citing:
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+
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  ```
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  @inproceedings{
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  gao2024barcodemamba,
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  title={BarcodeMamba: State Space Models for Biodiversity Analysis},
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  author={Tiancheng Gao and Graham W.~Taylor},
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  booktitle={{NeurIPS} 2024 Workshop on Foundation Models for Science: Progress, Opportunities, and Challenges},
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+ year={2024},
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+ url={https://openreview.net/forum?id=6ohFEFTr10}
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+ }
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+ ```