_id
stringlengths 2
7
| title
stringlengths 3
140
| partition
stringclasses 3
values | text
stringlengths 73
34.1k
| language
stringclasses 1
value | meta_information
dict |
|---|---|---|---|---|---|
q179900
|
Token.getDepLabel
|
test
|
public String getDepLabel() {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depLabel == null)
jcasType.jcas.throwFeatMissing("depLabel", "edu.cmu.lti.oaqa.type.nlp.Token");
return jcasType.ll_cas.ll_getStringValue(addr, ((Token_Type)jcasType).casFeatCode_depLabel);}
|
java
|
{
"resource": ""
}
|
q179901
|
Token.setDepLabel
|
test
|
public void setDepLabel(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_depLabel == null)
jcasType.jcas.throwFeatMissing("depLabel", "edu.cmu.lti.oaqa.type.nlp.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_depLabel, v);}
|
java
|
{
"resource": ""
}
|
q179902
|
Token.getSemanticType
|
test
|
public String getSemanticType() {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_semanticType == null)
jcasType.jcas.throwFeatMissing("semanticType", "edu.cmu.lti.oaqa.type.nlp.Token");
return jcasType.ll_cas.ll_getStringValue(addr, ((Token_Type)jcasType).casFeatCode_semanticType);}
|
java
|
{
"resource": ""
}
|
q179903
|
Token.setSemanticType
|
test
|
public void setSemanticType(String v) {
if (Token_Type.featOkTst && ((Token_Type)jcasType).casFeat_semanticType == null)
jcasType.jcas.throwFeatMissing("semanticType", "edu.cmu.lti.oaqa.type.nlp.Token");
jcasType.ll_cas.ll_setStringValue(addr, ((Token_Type)jcasType).casFeatCode_semanticType, v);}
|
java
|
{
"resource": ""
}
|
q179904
|
Document.getSections
|
test
|
public StringArray getSections() {
if (Document_Type.featOkTst && ((Document_Type)jcasType).casFeat_sections == null)
jcasType.jcas.throwFeatMissing("sections", "edu.cmu.lti.oaqa.type.retrieval.Document");
return (StringArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Document_Type)jcasType).casFeatCode_sections)));}
|
java
|
{
"resource": ""
}
|
q179905
|
Document.setSections
|
test
|
public void setSections(StringArray v) {
if (Document_Type.featOkTst && ((Document_Type)jcasType).casFeat_sections == null)
jcasType.jcas.throwFeatMissing("sections", "edu.cmu.lti.oaqa.type.retrieval.Document");
jcasType.ll_cas.ll_setRefValue(addr, ((Document_Type)jcasType).casFeatCode_sections, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179906
|
Document.getSections
|
test
|
public String getSections(int i) {
if (Document_Type.featOkTst && ((Document_Type)jcasType).casFeat_sections == null)
jcasType.jcas.throwFeatMissing("sections", "edu.cmu.lti.oaqa.type.retrieval.Document");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Document_Type)jcasType).casFeatCode_sections), i);
return jcasType.ll_cas.ll_getStringArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Document_Type)jcasType).casFeatCode_sections), i);}
|
java
|
{
"resource": ""
}
|
q179907
|
Document.setSections
|
test
|
public void setSections(int i, String v) {
if (Document_Type.featOkTst && ((Document_Type)jcasType).casFeat_sections == null)
jcasType.jcas.throwFeatMissing("sections", "edu.cmu.lti.oaqa.type.retrieval.Document");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Document_Type)jcasType).casFeatCode_sections), i);
jcasType.ll_cas.ll_setStringArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Document_Type)jcasType).casFeatCode_sections), i, v);}
|
java
|
{
"resource": ""
}
|
q179908
|
Concept.getUris
|
test
|
public StringList getUris() {
if (Concept_Type.featOkTst && ((Concept_Type)jcasType).casFeat_uris == null)
jcasType.jcas.throwFeatMissing("uris", "edu.cmu.lti.oaqa.type.kb.Concept");
return (StringList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Concept_Type)jcasType).casFeatCode_uris)));}
|
java
|
{
"resource": ""
}
|
q179909
|
Concept.setUris
|
test
|
public void setUris(StringList v) {
if (Concept_Type.featOkTst && ((Concept_Type)jcasType).casFeat_uris == null)
jcasType.jcas.throwFeatMissing("uris", "edu.cmu.lti.oaqa.type.kb.Concept");
jcasType.ll_cas.ll_setRefValue(addr, ((Concept_Type)jcasType).casFeatCode_uris, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179910
|
Concept.getTypes
|
test
|
public FSList getTypes() {
if (Concept_Type.featOkTst && ((Concept_Type)jcasType).casFeat_types == null)
jcasType.jcas.throwFeatMissing("types", "edu.cmu.lti.oaqa.type.kb.Concept");
return (FSList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Concept_Type)jcasType).casFeatCode_types)));}
|
java
|
{
"resource": ""
}
|
q179911
|
Concept.setTypes
|
test
|
public void setTypes(FSList v) {
if (Concept_Type.featOkTst && ((Concept_Type)jcasType).casFeat_types == null)
jcasType.jcas.throwFeatMissing("types", "edu.cmu.lti.oaqa.type.kb.Concept");
jcasType.ll_cas.ll_setRefValue(addr, ((Concept_Type)jcasType).casFeatCode_types, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179912
|
AnswerType.getTargetType
|
test
|
public Annotation getTargetType() {
if (AnswerType_Type.featOkTst && ((AnswerType_Type)jcasType).casFeat_targetType == null)
jcasType.jcas.throwFeatMissing("targetType", "edu.cmu.lti.oaqa.type.answer.AnswerType");
return (Annotation)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((AnswerType_Type)jcasType).casFeatCode_targetType)));}
|
java
|
{
"resource": ""
}
|
q179913
|
AnswerType.setTargetType
|
test
|
public void setTargetType(Annotation v) {
if (AnswerType_Type.featOkTst && ((AnswerType_Type)jcasType).casFeat_targetType == null)
jcasType.jcas.throwFeatMissing("targetType", "edu.cmu.lti.oaqa.type.answer.AnswerType");
jcasType.ll_cas.ll_setRefValue(addr, ((AnswerType_Type)jcasType).casFeatCode_targetType, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179914
|
SearchResult.getRank
|
test
|
public int getRank() {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_rank == null)
jcasType.jcas.throwFeatMissing("rank", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
return jcasType.ll_cas.ll_getIntValue(addr, ((SearchResult_Type)jcasType).casFeatCode_rank);}
|
java
|
{
"resource": ""
}
|
q179915
|
SearchResult.setRank
|
test
|
public void setRank(int v) {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_rank == null)
jcasType.jcas.throwFeatMissing("rank", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
jcasType.ll_cas.ll_setIntValue(addr, ((SearchResult_Type)jcasType).casFeatCode_rank, v);}
|
java
|
{
"resource": ""
}
|
q179916
|
SearchResult.getQueryString
|
test
|
public String getQueryString() {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_queryString == null)
jcasType.jcas.throwFeatMissing("queryString", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
return jcasType.ll_cas.ll_getStringValue(addr, ((SearchResult_Type)jcasType).casFeatCode_queryString);}
|
java
|
{
"resource": ""
}
|
q179917
|
SearchResult.setQueryString
|
test
|
public void setQueryString(String v) {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_queryString == null)
jcasType.jcas.throwFeatMissing("queryString", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
jcasType.ll_cas.ll_setStringValue(addr, ((SearchResult_Type)jcasType).casFeatCode_queryString, v);}
|
java
|
{
"resource": ""
}
|
q179918
|
SearchResult.getCandidateAnswers
|
test
|
public FSArray getCandidateAnswers() {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_candidateAnswers == null)
jcasType.jcas.throwFeatMissing("candidateAnswers", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((SearchResult_Type)jcasType).casFeatCode_candidateAnswers)));}
|
java
|
{
"resource": ""
}
|
q179919
|
SearchResult.setCandidateAnswers
|
test
|
public void setCandidateAnswers(FSArray v) {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_candidateAnswers == null)
jcasType.jcas.throwFeatMissing("candidateAnswers", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
jcasType.ll_cas.ll_setRefValue(addr, ((SearchResult_Type)jcasType).casFeatCode_candidateAnswers, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179920
|
SearchResult.getCandidateAnswers
|
test
|
public CandidateAnswerVariant getCandidateAnswers(int i) {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_candidateAnswers == null)
jcasType.jcas.throwFeatMissing("candidateAnswers", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((SearchResult_Type)jcasType).casFeatCode_candidateAnswers), i);
return (CandidateAnswerVariant)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((SearchResult_Type)jcasType).casFeatCode_candidateAnswers), i)));}
|
java
|
{
"resource": ""
}
|
q179921
|
SearchResult.setCandidateAnswers
|
test
|
public void setCandidateAnswers(int i, CandidateAnswerVariant v) {
if (SearchResult_Type.featOkTst && ((SearchResult_Type)jcasType).casFeat_candidateAnswers == null)
jcasType.jcas.throwFeatMissing("candidateAnswers", "edu.cmu.lti.oaqa.type.retrieval.SearchResult");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((SearchResult_Type)jcasType).casFeatCode_candidateAnswers), i);
jcasType.ll_cas.ll_setRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((SearchResult_Type)jcasType).casFeatCode_candidateAnswers), i, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179922
|
Search.getQuery
|
test
|
public String getQuery() {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_query == null)
jcasType.jcas.throwFeatMissing("query", "edu.cmu.lti.oaqa.type.retrieval.Search");
return jcasType.ll_cas.ll_getStringValue(addr, ((Search_Type)jcasType).casFeatCode_query);}
|
java
|
{
"resource": ""
}
|
q179923
|
Search.setQuery
|
test
|
public void setQuery(String v) {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_query == null)
jcasType.jcas.throwFeatMissing("query", "edu.cmu.lti.oaqa.type.retrieval.Search");
jcasType.ll_cas.ll_setStringValue(addr, ((Search_Type)jcasType).casFeatCode_query, v);}
|
java
|
{
"resource": ""
}
|
q179924
|
Search.getHitList
|
test
|
public FSArray getHitList() {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_hitList == null)
jcasType.jcas.throwFeatMissing("hitList", "edu.cmu.lti.oaqa.type.retrieval.Search");
return (FSArray)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Search_Type)jcasType).casFeatCode_hitList)));}
|
java
|
{
"resource": ""
}
|
q179925
|
Search.setHitList
|
test
|
public void setHitList(FSArray v) {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_hitList == null)
jcasType.jcas.throwFeatMissing("hitList", "edu.cmu.lti.oaqa.type.retrieval.Search");
jcasType.ll_cas.ll_setRefValue(addr, ((Search_Type)jcasType).casFeatCode_hitList, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179926
|
Search.getHitList
|
test
|
public SearchResult getHitList(int i) {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_hitList == null)
jcasType.jcas.throwFeatMissing("hitList", "edu.cmu.lti.oaqa.type.retrieval.Search");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Search_Type)jcasType).casFeatCode_hitList), i);
return (SearchResult)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Search_Type)jcasType).casFeatCode_hitList), i)));}
|
java
|
{
"resource": ""
}
|
q179927
|
Search.setHitList
|
test
|
public void setHitList(int i, SearchResult v) {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_hitList == null)
jcasType.jcas.throwFeatMissing("hitList", "edu.cmu.lti.oaqa.type.retrieval.Search");
jcasType.jcas.checkArrayBounds(jcasType.ll_cas.ll_getRefValue(addr, ((Search_Type)jcasType).casFeatCode_hitList), i);
jcasType.ll_cas.ll_setRefArrayValue(jcasType.ll_cas.ll_getRefValue(addr, ((Search_Type)jcasType).casFeatCode_hitList), i, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179928
|
Search.getAbstractQuery
|
test
|
public AbstractQuery getAbstractQuery() {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_abstractQuery == null)
jcasType.jcas.throwFeatMissing("abstractQuery", "edu.cmu.lti.oaqa.type.retrieval.Search");
return (AbstractQuery)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Search_Type)jcasType).casFeatCode_abstractQuery)));}
|
java
|
{
"resource": ""
}
|
q179929
|
Search.setAbstractQuery
|
test
|
public void setAbstractQuery(AbstractQuery v) {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_abstractQuery == null)
jcasType.jcas.throwFeatMissing("abstractQuery", "edu.cmu.lti.oaqa.type.retrieval.Search");
jcasType.ll_cas.ll_setRefValue(addr, ((Search_Type)jcasType).casFeatCode_abstractQuery, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179930
|
Search.getSearchId
|
test
|
public String getSearchId() {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_searchId == null)
jcasType.jcas.throwFeatMissing("searchId", "edu.cmu.lti.oaqa.type.retrieval.Search");
return jcasType.ll_cas.ll_getStringValue(addr, ((Search_Type)jcasType).casFeatCode_searchId);}
|
java
|
{
"resource": ""
}
|
q179931
|
Search.setSearchId
|
test
|
public void setSearchId(String v) {
if (Search_Type.featOkTst && ((Search_Type)jcasType).casFeat_searchId == null)
jcasType.jcas.throwFeatMissing("searchId", "edu.cmu.lti.oaqa.type.retrieval.Search");
jcasType.ll_cas.ll_setStringValue(addr, ((Search_Type)jcasType).casFeatCode_searchId, v);}
|
java
|
{
"resource": ""
}
|
q179932
|
Passage.setDocId
|
test
|
public void setDocId(String v) {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_docId == null)
jcasType.jcas.throwFeatMissing("docId", "edu.cmu.lti.oaqa.type.retrieval.Passage");
jcasType.ll_cas.ll_setStringValue(addr, ((Passage_Type)jcasType).casFeatCode_docId, v);}
|
java
|
{
"resource": ""
}
|
q179933
|
Passage.getOffsetInBeginSection
|
test
|
public int getOffsetInBeginSection() {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_offsetInBeginSection == null)
jcasType.jcas.throwFeatMissing("offsetInBeginSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
return jcasType.ll_cas.ll_getIntValue(addr, ((Passage_Type)jcasType).casFeatCode_offsetInBeginSection);}
|
java
|
{
"resource": ""
}
|
q179934
|
Passage.setOffsetInBeginSection
|
test
|
public void setOffsetInBeginSection(int v) {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_offsetInBeginSection == null)
jcasType.jcas.throwFeatMissing("offsetInBeginSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
jcasType.ll_cas.ll_setIntValue(addr, ((Passage_Type)jcasType).casFeatCode_offsetInBeginSection, v);}
|
java
|
{
"resource": ""
}
|
q179935
|
Passage.getOffsetInEndSection
|
test
|
public int getOffsetInEndSection() {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_offsetInEndSection == null)
jcasType.jcas.throwFeatMissing("offsetInEndSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
return jcasType.ll_cas.ll_getIntValue(addr, ((Passage_Type)jcasType).casFeatCode_offsetInEndSection);}
|
java
|
{
"resource": ""
}
|
q179936
|
Passage.setOffsetInEndSection
|
test
|
public void setOffsetInEndSection(int v) {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_offsetInEndSection == null)
jcasType.jcas.throwFeatMissing("offsetInEndSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
jcasType.ll_cas.ll_setIntValue(addr, ((Passage_Type)jcasType).casFeatCode_offsetInEndSection, v);}
|
java
|
{
"resource": ""
}
|
q179937
|
Passage.getBeginSection
|
test
|
public String getBeginSection() {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_beginSection == null)
jcasType.jcas.throwFeatMissing("beginSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
return jcasType.ll_cas.ll_getStringValue(addr, ((Passage_Type)jcasType).casFeatCode_beginSection);}
|
java
|
{
"resource": ""
}
|
q179938
|
Passage.setBeginSection
|
test
|
public void setBeginSection(String v) {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_beginSection == null)
jcasType.jcas.throwFeatMissing("beginSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
jcasType.ll_cas.ll_setStringValue(addr, ((Passage_Type)jcasType).casFeatCode_beginSection, v);}
|
java
|
{
"resource": ""
}
|
q179939
|
Passage.getEndSection
|
test
|
public String getEndSection() {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_endSection == null)
jcasType.jcas.throwFeatMissing("endSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
return jcasType.ll_cas.ll_getStringValue(addr, ((Passage_Type)jcasType).casFeatCode_endSection);}
|
java
|
{
"resource": ""
}
|
q179940
|
Passage.setEndSection
|
test
|
public void setEndSection(String v) {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_endSection == null)
jcasType.jcas.throwFeatMissing("endSection", "edu.cmu.lti.oaqa.type.retrieval.Passage");
jcasType.ll_cas.ll_setStringValue(addr, ((Passage_Type)jcasType).casFeatCode_endSection, v);}
|
java
|
{
"resource": ""
}
|
q179941
|
Passage.getAspects
|
test
|
public String getAspects() {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_aspects == null)
jcasType.jcas.throwFeatMissing("aspects", "edu.cmu.lti.oaqa.type.retrieval.Passage");
return jcasType.ll_cas.ll_getStringValue(addr, ((Passage_Type)jcasType).casFeatCode_aspects);}
|
java
|
{
"resource": ""
}
|
q179942
|
Passage.setAspects
|
test
|
public void setAspects(String v) {
if (Passage_Type.featOkTst && ((Passage_Type)jcasType).casFeat_aspects == null)
jcasType.jcas.throwFeatMissing("aspects", "edu.cmu.lti.oaqa.type.retrieval.Passage");
jcasType.ll_cas.ll_setStringValue(addr, ((Passage_Type)jcasType).casFeatCode_aspects, v);}
|
java
|
{
"resource": ""
}
|
q179943
|
TripleSearchResult.getTriple
|
test
|
public Triple getTriple() {
if (TripleSearchResult_Type.featOkTst && ((TripleSearchResult_Type)jcasType).casFeat_triple == null)
jcasType.jcas.throwFeatMissing("triple", "edu.cmu.lti.oaqa.type.retrieval.TripleSearchResult");
return (Triple)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((TripleSearchResult_Type)jcasType).casFeatCode_triple)));}
|
java
|
{
"resource": ""
}
|
q179944
|
TripleSearchResult.setTriple
|
test
|
public void setTriple(Triple v) {
if (TripleSearchResult_Type.featOkTst && ((TripleSearchResult_Type)jcasType).casFeat_triple == null)
jcasType.jcas.throwFeatMissing("triple", "edu.cmu.lti.oaqa.type.retrieval.TripleSearchResult");
jcasType.ll_cas.ll_setRefValue(addr, ((TripleSearchResult_Type)jcasType).casFeatCode_triple, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179945
|
PassageFromRelation.getSourceRelation
|
test
|
public Triple getSourceRelation() {
if (PassageFromRelation_Type.featOkTst && ((PassageFromRelation_Type)jcasType).casFeat_sourceRelation == null)
jcasType.jcas.throwFeatMissing("sourceRelation", "edu.cmu.lti.oaqa.type.retrieval.PassageFromRelation");
return (Triple)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((PassageFromRelation_Type)jcasType).casFeatCode_sourceRelation)));}
|
java
|
{
"resource": ""
}
|
q179946
|
PassageFromRelation.setSourceRelation
|
test
|
public void setSourceRelation(Triple v) {
if (PassageFromRelation_Type.featOkTst && ((PassageFromRelation_Type)jcasType).casFeat_sourceRelation == null)
jcasType.jcas.throwFeatMissing("sourceRelation", "edu.cmu.lti.oaqa.type.retrieval.PassageFromRelation");
jcasType.ll_cas.ll_setRefValue(addr, ((PassageFromRelation_Type)jcasType).casFeatCode_sourceRelation, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179947
|
Triple.getSubject
|
test
|
public String getSubject() {
if (Triple_Type.featOkTst && ((Triple_Type)jcasType).casFeat_subject == null)
jcasType.jcas.throwFeatMissing("subject", "edu.cmu.lti.oaqa.type.kb.Triple");
return jcasType.ll_cas.ll_getStringValue(addr, ((Triple_Type)jcasType).casFeatCode_subject);}
|
java
|
{
"resource": ""
}
|
q179948
|
Triple.setSubject
|
test
|
public void setSubject(String v) {
if (Triple_Type.featOkTst && ((Triple_Type)jcasType).casFeat_subject == null)
jcasType.jcas.throwFeatMissing("subject", "edu.cmu.lti.oaqa.type.kb.Triple");
jcasType.ll_cas.ll_setStringValue(addr, ((Triple_Type)jcasType).casFeatCode_subject, v);}
|
java
|
{
"resource": ""
}
|
q179949
|
Triple.getPredicate
|
test
|
public String getPredicate() {
if (Triple_Type.featOkTst && ((Triple_Type)jcasType).casFeat_predicate == null)
jcasType.jcas.throwFeatMissing("predicate", "edu.cmu.lti.oaqa.type.kb.Triple");
return jcasType.ll_cas.ll_getStringValue(addr, ((Triple_Type)jcasType).casFeatCode_predicate);}
|
java
|
{
"resource": ""
}
|
q179950
|
Triple.setPredicate
|
test
|
public void setPredicate(String v) {
if (Triple_Type.featOkTst && ((Triple_Type)jcasType).casFeat_predicate == null)
jcasType.jcas.throwFeatMissing("predicate", "edu.cmu.lti.oaqa.type.kb.Triple");
jcasType.ll_cas.ll_setStringValue(addr, ((Triple_Type)jcasType).casFeatCode_predicate, v);}
|
java
|
{
"resource": ""
}
|
q179951
|
Triple.getIsObjUri
|
test
|
public boolean getIsObjUri() {
if (Triple_Type.featOkTst && ((Triple_Type)jcasType).casFeat_isObjUri == null)
jcasType.jcas.throwFeatMissing("isObjUri", "edu.cmu.lti.oaqa.type.kb.Triple");
return jcasType.ll_cas.ll_getBooleanValue(addr, ((Triple_Type)jcasType).casFeatCode_isObjUri);}
|
java
|
{
"resource": ""
}
|
q179952
|
Triple.setIsObjUri
|
test
|
public void setIsObjUri(boolean v) {
if (Triple_Type.featOkTst && ((Triple_Type)jcasType).casFeat_isObjUri == null)
jcasType.jcas.throwFeatMissing("isObjUri", "edu.cmu.lti.oaqa.type.kb.Triple");
jcasType.ll_cas.ll_setBooleanValue(addr, ((Triple_Type)jcasType).casFeatCode_isObjUri, v);}
|
java
|
{
"resource": ""
}
|
q179953
|
ComplexQueryConcept.getOperator
|
test
|
public QueryOperator getOperator() {
if (ComplexQueryConcept_Type.featOkTst && ((ComplexQueryConcept_Type)jcasType).casFeat_operator == null)
jcasType.jcas.throwFeatMissing("operator", "edu.cmu.lti.oaqa.type.retrieval.ComplexQueryConcept");
return (QueryOperator)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((ComplexQueryConcept_Type)jcasType).casFeatCode_operator)));}
|
java
|
{
"resource": ""
}
|
q179954
|
ComplexQueryConcept.setOperator
|
test
|
public void setOperator(QueryOperator v) {
if (ComplexQueryConcept_Type.featOkTst && ((ComplexQueryConcept_Type)jcasType).casFeat_operator == null)
jcasType.jcas.throwFeatMissing("operator", "edu.cmu.lti.oaqa.type.retrieval.ComplexQueryConcept");
jcasType.ll_cas.ll_setRefValue(addr, ((ComplexQueryConcept_Type)jcasType).casFeatCode_operator, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179955
|
ComplexQueryConcept.getOperatorArgs
|
test
|
public FSList getOperatorArgs() {
if (ComplexQueryConcept_Type.featOkTst && ((ComplexQueryConcept_Type)jcasType).casFeat_operatorArgs == null)
jcasType.jcas.throwFeatMissing("operatorArgs", "edu.cmu.lti.oaqa.type.retrieval.ComplexQueryConcept");
return (FSList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((ComplexQueryConcept_Type)jcasType).casFeatCode_operatorArgs)));}
|
java
|
{
"resource": ""
}
|
q179956
|
ComplexQueryConcept.setOperatorArgs
|
test
|
public void setOperatorArgs(FSList v) {
if (ComplexQueryConcept_Type.featOkTst && ((ComplexQueryConcept_Type)jcasType).casFeat_operatorArgs == null)
jcasType.jcas.throwFeatMissing("operatorArgs", "edu.cmu.lti.oaqa.type.retrieval.ComplexQueryConcept");
jcasType.ll_cas.ll_setRefValue(addr, ((ComplexQueryConcept_Type)jcasType).casFeatCode_operatorArgs, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179957
|
ConceptMention.getConcept
|
test
|
public Concept getConcept() {
if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_concept == null)
jcasType.jcas.throwFeatMissing("concept", "edu.cmu.lti.oaqa.type.kb.ConceptMention");
return (Concept)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((ConceptMention_Type)jcasType).casFeatCode_concept)));}
|
java
|
{
"resource": ""
}
|
q179958
|
ConceptMention.getScore
|
test
|
public double getScore() {
if (ConceptMention_Type.featOkTst && ((ConceptMention_Type)jcasType).casFeat_score == null)
jcasType.jcas.throwFeatMissing("score", "edu.cmu.lti.oaqa.type.kb.ConceptMention");
return jcasType.ll_cas.ll_getDoubleValue(addr, ((ConceptMention_Type)jcasType).casFeatCode_score);}
|
java
|
{
"resource": ""
}
|
q179959
|
CandidateAnswerOccurrence.getText
|
test
|
public String getText() {
if (CandidateAnswerOccurrence_Type.featOkTst && ((CandidateAnswerOccurrence_Type)jcasType).casFeat_text == null)
jcasType.jcas.throwFeatMissing("text", "edu.cmu.lti.oaqa.type.answer.CandidateAnswerOccurrence");
return jcasType.ll_cas.ll_getStringValue(addr, ((CandidateAnswerOccurrence_Type)jcasType).casFeatCode_text);}
|
java
|
{
"resource": ""
}
|
q179960
|
CandidateAnswerOccurrence.setText
|
test
|
public void setText(String v) {
if (CandidateAnswerOccurrence_Type.featOkTst && ((CandidateAnswerOccurrence_Type)jcasType).casFeat_text == null)
jcasType.jcas.throwFeatMissing("text", "edu.cmu.lti.oaqa.type.answer.CandidateAnswerOccurrence");
jcasType.ll_cas.ll_setStringValue(addr, ((CandidateAnswerOccurrence_Type)jcasType).casFeatCode_text, v);}
|
java
|
{
"resource": ""
}
|
q179961
|
ConceptType.getId
|
test
|
public String getId() {
if (ConceptType_Type.featOkTst && ((ConceptType_Type)jcasType).casFeat_id == null)
jcasType.jcas.throwFeatMissing("id", "edu.cmu.lti.oaqa.type.kb.ConceptType");
return jcasType.ll_cas.ll_getStringValue(addr, ((ConceptType_Type)jcasType).casFeatCode_id);}
|
java
|
{
"resource": ""
}
|
q179962
|
ConceptType.setId
|
test
|
public void setId(String v) {
if (ConceptType_Type.featOkTst && ((ConceptType_Type)jcasType).casFeat_id == null)
jcasType.jcas.throwFeatMissing("id", "edu.cmu.lti.oaqa.type.kb.ConceptType");
jcasType.ll_cas.ll_setStringValue(addr, ((ConceptType_Type)jcasType).casFeatCode_id, v);}
|
java
|
{
"resource": ""
}
|
q179963
|
ConceptType.getName
|
test
|
public String getName() {
if (ConceptType_Type.featOkTst && ((ConceptType_Type)jcasType).casFeat_name == null)
jcasType.jcas.throwFeatMissing("name", "edu.cmu.lti.oaqa.type.kb.ConceptType");
return jcasType.ll_cas.ll_getStringValue(addr, ((ConceptType_Type)jcasType).casFeatCode_name);}
|
java
|
{
"resource": ""
}
|
q179964
|
ConceptType.getAbbreviation
|
test
|
public String getAbbreviation() {
if (ConceptType_Type.featOkTst && ((ConceptType_Type)jcasType).casFeat_abbreviation == null)
jcasType.jcas.throwFeatMissing("abbreviation", "edu.cmu.lti.oaqa.type.kb.ConceptType");
return jcasType.ll_cas.ll_getStringValue(addr, ((ConceptType_Type)jcasType).casFeatCode_abbreviation);}
|
java
|
{
"resource": ""
}
|
q179965
|
ConceptType.setAbbreviation
|
test
|
public void setAbbreviation(String v) {
if (ConceptType_Type.featOkTst && ((ConceptType_Type)jcasType).casFeat_abbreviation == null)
jcasType.jcas.throwFeatMissing("abbreviation", "edu.cmu.lti.oaqa.type.kb.ConceptType");
jcasType.ll_cas.ll_setStringValue(addr, ((ConceptType_Type)jcasType).casFeatCode_abbreviation, v);}
|
java
|
{
"resource": ""
}
|
q179966
|
ConceptSearchResult.setConcept
|
test
|
public void setConcept(Concept v) {
if (ConceptSearchResult_Type.featOkTst && ((ConceptSearchResult_Type)jcasType).casFeat_concept == null)
jcasType.jcas.throwFeatMissing("concept", "edu.cmu.lti.oaqa.type.retrieval.ConceptSearchResult");
jcasType.ll_cas.ll_setRefValue(addr, ((ConceptSearchResult_Type)jcasType).casFeatCode_concept, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179967
|
Answer.getVariants
|
test
|
public FSList getVariants() {
if (Answer_Type.featOkTst && ((Answer_Type)jcasType).casFeat_variants == null)
jcasType.jcas.throwFeatMissing("variants", "edu.cmu.lti.oaqa.type.answer.Answer");
return (FSList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((Answer_Type)jcasType).casFeatCode_variants)));}
|
java
|
{
"resource": ""
}
|
q179968
|
Answer.setVariants
|
test
|
public void setVariants(FSList v) {
if (Answer_Type.featOkTst && ((Answer_Type)jcasType).casFeat_variants == null)
jcasType.jcas.throwFeatMissing("variants", "edu.cmu.lti.oaqa.type.answer.Answer");
jcasType.ll_cas.ll_setRefValue(addr, ((Answer_Type)jcasType).casFeatCode_variants, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179969
|
QueryConcept.getNamedEntityTypes
|
test
|
public StringList getNamedEntityTypes() {
if (QueryConcept_Type.featOkTst && ((QueryConcept_Type)jcasType).casFeat_namedEntityTypes == null)
jcasType.jcas.throwFeatMissing("namedEntityTypes", "edu.cmu.lti.oaqa.type.retrieval.QueryConcept");
return (StringList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((QueryConcept_Type)jcasType).casFeatCode_namedEntityTypes)));}
|
java
|
{
"resource": ""
}
|
q179970
|
QueryConcept.setNamedEntityTypes
|
test
|
public void setNamedEntityTypes(StringList v) {
if (QueryConcept_Type.featOkTst && ((QueryConcept_Type)jcasType).casFeat_namedEntityTypes == null)
jcasType.jcas.throwFeatMissing("namedEntityTypes", "edu.cmu.lti.oaqa.type.retrieval.QueryConcept");
jcasType.ll_cas.ll_setRefValue(addr, ((QueryConcept_Type)jcasType).casFeatCode_namedEntityTypes, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179971
|
QueryConcept.getConceptType
|
test
|
public String getConceptType() {
if (QueryConcept_Type.featOkTst && ((QueryConcept_Type)jcasType).casFeat_conceptType == null)
jcasType.jcas.throwFeatMissing("conceptType", "edu.cmu.lti.oaqa.type.retrieval.QueryConcept");
return jcasType.ll_cas.ll_getStringValue(addr, ((QueryConcept_Type)jcasType).casFeatCode_conceptType);}
|
java
|
{
"resource": ""
}
|
q179972
|
QueryConcept.setConceptType
|
test
|
public void setConceptType(String v) {
if (QueryConcept_Type.featOkTst && ((QueryConcept_Type)jcasType).casFeat_conceptType == null)
jcasType.jcas.throwFeatMissing("conceptType", "edu.cmu.lti.oaqa.type.retrieval.QueryConcept");
jcasType.ll_cas.ll_setStringValue(addr, ((QueryConcept_Type)jcasType).casFeatCode_conceptType, v);}
|
java
|
{
"resource": ""
}
|
q179973
|
CandidateAnswerVariant.getOccurrences
|
test
|
public FSList getOccurrences() {
if (CandidateAnswerVariant_Type.featOkTst && ((CandidateAnswerVariant_Type)jcasType).casFeat_occurrences == null)
jcasType.jcas.throwFeatMissing("occurrences", "edu.cmu.lti.oaqa.type.answer.CandidateAnswerVariant");
return (FSList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((CandidateAnswerVariant_Type)jcasType).casFeatCode_occurrences)));}
|
java
|
{
"resource": ""
}
|
q179974
|
CandidateAnswerVariant.setOccurrences
|
test
|
public void setOccurrences(FSList v) {
if (CandidateAnswerVariant_Type.featOkTst && ((CandidateAnswerVariant_Type)jcasType).casFeat_occurrences == null)
jcasType.jcas.throwFeatMissing("occurrences", "edu.cmu.lti.oaqa.type.answer.CandidateAnswerVariant");
jcasType.ll_cas.ll_setRefValue(addr, ((CandidateAnswerVariant_Type)jcasType).casFeatCode_occurrences, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179975
|
AbstractQuery.getConcepts
|
test
|
public FSList getConcepts() {
if (AbstractQuery_Type.featOkTst && ((AbstractQuery_Type)jcasType).casFeat_concepts == null)
jcasType.jcas.throwFeatMissing("concepts", "edu.cmu.lti.oaqa.type.retrieval.AbstractQuery");
return (FSList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((AbstractQuery_Type)jcasType).casFeatCode_concepts)));}
|
java
|
{
"resource": ""
}
|
q179976
|
AbstractQuery.setConcepts
|
test
|
public void setConcepts(FSList v) {
if (AbstractQuery_Type.featOkTst && ((AbstractQuery_Type)jcasType).casFeat_concepts == null)
jcasType.jcas.throwFeatMissing("concepts", "edu.cmu.lti.oaqa.type.retrieval.AbstractQuery");
jcasType.ll_cas.ll_setRefValue(addr, ((AbstractQuery_Type)jcasType).casFeatCode_concepts, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179977
|
AtomicQueryConcept.getOriginalText
|
test
|
public String getOriginalText() {
if (AtomicQueryConcept_Type.featOkTst && ((AtomicQueryConcept_Type)jcasType).casFeat_originalText == null)
jcasType.jcas.throwFeatMissing("originalText", "edu.cmu.lti.oaqa.type.retrieval.AtomicQueryConcept");
return jcasType.ll_cas.ll_getStringValue(addr, ((AtomicQueryConcept_Type)jcasType).casFeatCode_originalText);}
|
java
|
{
"resource": ""
}
|
q179978
|
AtomicQueryConcept.setOriginalText
|
test
|
public void setOriginalText(String v) {
if (AtomicQueryConcept_Type.featOkTst && ((AtomicQueryConcept_Type)jcasType).casFeat_originalText == null)
jcasType.jcas.throwFeatMissing("originalText", "edu.cmu.lti.oaqa.type.retrieval.AtomicQueryConcept");
jcasType.ll_cas.ll_setStringValue(addr, ((AtomicQueryConcept_Type)jcasType).casFeatCode_originalText, v);}
|
java
|
{
"resource": ""
}
|
q179979
|
QueryOperator.getArgs
|
test
|
public StringList getArgs() {
if (QueryOperator_Type.featOkTst && ((QueryOperator_Type)jcasType).casFeat_args == null)
jcasType.jcas.throwFeatMissing("args", "edu.cmu.lti.oaqa.type.retrieval.QueryOperator");
return (StringList)(jcasType.ll_cas.ll_getFSForRef(jcasType.ll_cas.ll_getRefValue(addr, ((QueryOperator_Type)jcasType).casFeatCode_args)));}
|
java
|
{
"resource": ""
}
|
q179980
|
QueryOperator.setArgs
|
test
|
public void setArgs(StringList v) {
if (QueryOperator_Type.featOkTst && ((QueryOperator_Type)jcasType).casFeat_args == null)
jcasType.jcas.throwFeatMissing("args", "edu.cmu.lti.oaqa.type.retrieval.QueryOperator");
jcasType.ll_cas.ll_setRefValue(addr, ((QueryOperator_Type)jcasType).casFeatCode_args, jcasType.ll_cas.ll_getFSRef(v));}
|
java
|
{
"resource": ""
}
|
q179981
|
SemanticRole.getLabel
|
test
|
public String getLabel() {
if (SemanticRole_Type.featOkTst && ((SemanticRole_Type)jcasType).casFeat_label == null)
jcasType.jcas.throwFeatMissing("label", "edu.cmu.lti.oaqa.type.nlp.SemanticRole");
return jcasType.ll_cas.ll_getStringValue(addr, ((SemanticRole_Type)jcasType).casFeatCode_label);}
|
java
|
{
"resource": ""
}
|
q179982
|
SemanticRole.setLabel
|
test
|
public void setLabel(String v) {
if (SemanticRole_Type.featOkTst && ((SemanticRole_Type)jcasType).casFeat_label == null)
jcasType.jcas.throwFeatMissing("label", "edu.cmu.lti.oaqa.type.nlp.SemanticRole");
jcasType.ll_cas.ll_setStringValue(addr, ((SemanticRole_Type)jcasType).casFeatCode_label, v);}
|
java
|
{
"resource": ""
}
|
q179983
|
BlockLocks.nextClearBit
|
test
|
public int nextClearBit(int index) {
int i = index >> 6;
if (i >= wlen)
return -1;
int subIndex = index & 0x3f; // index within the word
long word = ~bits.get(i) >> subIndex; // skip all the bits to the right of
// index
if (word != 0) {
return (i << 6) + subIndex + Long.numberOfTrailingZeros(word);
}
while (++i < wlen) {
word = ~bits.get(i);
if (word != 0) {
return (i << 6) + Long.numberOfTrailingZeros(word);
}
}
return -1;
}
|
java
|
{
"resource": ""
}
|
q179984
|
BlockLocks.set
|
test
|
public boolean set(int index) {
int wordNum = index >> 6; // div 64
int bit = index & 0x3f; // mod 64
long bitmask = 1L << bit;
long word, oword;
do {
word = bits.get(wordNum);
// if set another thread stole the lock
if ((word & bitmask) != 0) {
return false;
}
oword = word;
word |= bitmask;
} while (!bits.compareAndSet(wordNum, oword, word));
return true;
}
|
java
|
{
"resource": ""
}
|
q179985
|
BlockCache.freeBuffer
|
test
|
protected void freeBuffer(final ByteBuffer buffer) throws IOException {
if (buffer == null) {
return;
}
if (UNMAP_SUPPORTED) {
try {
AccessController.doPrivileged(new PrivilegedExceptionAction<Void>() {
@Override
public Void run() throws Exception {
final Method getCleanerMethod = buffer.getClass().getMethod("cleaner");
getCleanerMethod.setAccessible(true);
final Object cleaner = getCleanerMethod.invoke(buffer);
if (cleaner != null) {
cleaner.getClass().getMethod("clean").invoke(cleaner);
}
return null;
}
});
} catch (PrivilegedActionException e) {
final IOException ioe = new IOException("unable to unmap the mapped buffer");
ioe.initCause(e.getCause());
throw ioe;
}
}
}
|
java
|
{
"resource": ""
}
|
q179986
|
Cache.newInstance
|
test
|
public CacheValue newInstance(CacheDirectory directory, String fileName) {
return newInstance(directory, fileName, getCacheBlockSize(directory, fileName));
}
|
java
|
{
"resource": ""
}
|
q179987
|
SlimSet.rehash
|
test
|
private static Object[] rehash(final Object[] values, final int newSize)
{
Object[] newArray = new Object[newSize];
for (Object value : values)
{
if (value == null)
{
continue;
}
newArray[predictedPosition(newArray, value, value.hashCode())] = value;
}
return newArray;
}
|
java
|
{
"resource": ""
}
|
q179988
|
PolymerElements.toHELM2
|
test
|
public String toHELM2() {
StringBuilder notation = new StringBuilder();
for (int i = 0; i < listMonomerNotations.size(); i++) {
notation.append(listMonomerNotations.get(i).toHELM2() + ".");
}
notation.setLength(notation.length() - 1);
return notation.toString();
}
|
java
|
{
"resource": ""
}
|
q179989
|
AnnotationsParser.checkBracketsParenthesis
|
test
|
private boolean checkBracketsParenthesis() {
LOG.debug("Check of brackets in the annotation section:");
if (bracketCounterOpen == bracketCounterClose
&& parenthesisCounterOpen == parenthesisCounterClose
&& curlyBracketCounterOpen == curlyBracketCounterClose) {
return true;
}
return false;
}
|
java
|
{
"resource": ""
}
|
q179990
|
ConnectionNotation.addDetails
|
test
|
private void addDetails(String str) throws NotationException{
String[] parts = str.split("-");
/* MonomerUnit */
sourceUnit = parts[0].split(":")[0].toUpperCase();
targetUnit = parts[1].split(":")[0].toUpperCase();
/* R-group */
rGroupSource = parts[0].split(":")[1];
rGroupTarget = parts[1].split(":")[1];
Pattern r = Pattern.compile("R\\d", Pattern.CASE_INSENSITIVE);
Pattern pair = Pattern.compile("pair", Pattern.CASE_INSENSITIVE);
Matcher mR = r.matcher(rGroupSource);
Matcher mPair = pair.matcher(rGroupTarget);
if(mR.matches()){
rGroupSource = rGroupSource.toUpperCase();
}else{
rGroupSource = rGroupSource.toLowerCase();
}
if(mPair.matches()){
rGroupTarget = rGroupTarget.toLowerCase();
}else{
rGroupTarget = rGroupTarget.toUpperCase();
}
}
|
java
|
{
"resource": ""
}
|
q179991
|
ConnectionNotation.toHELM2
|
test
|
public String toHELM2() {
if (isAnnotationTrue()) {
return sourceId.getId() + "," + targetId.getId() + "," + sourceUnit + ":"
+ rGroupSource + "-" + targetUnit + ":" + rGroupTarget + "\"" + annotation + "\"";
} else {
return sourceId.getId() + "," + targetId.getId() + "," + sourceUnit + ":"
+ rGroupSource + "-" + targetUnit + ":" + rGroupTarget;
}
}
|
java
|
{
"resource": ""
}
|
q179992
|
MonomerNotationGroup.addElement
|
test
|
public void addElement(String str, String type, double one, double two, boolean interval, boolean isDefault) throws NotationException{
this.elements.add(ValidationMethod.decideWhichMonomerNotationInGroup(str, type, one, two, interval, isDefault));
}
|
java
|
{
"resource": ""
}
|
q179993
|
StartHELM2Parser.main
|
test
|
public static void main(String[] args) throws ParseException,
ExceptionState, IOException {
/* options for the program */
Options options = new Options();
/* add helm string */
options.addOption("inputHELM", true, "HELM1 or HELM2 string in a file");
/* add output option */
options.addOption("output", true, "output can be in JSON- or HELM2-format");
/* add translate option */
options.addOption("translate", false, "translate HELM1 to HELM2");
CommandLineParser parameter = new DefaultParser();
try {
CommandLine cmd = parameter.parse(options, args);
String filename = cmd.getOptionValue("inputHELM");
ParserHELM2 parser = new ParserHELM2();
FileReader in = new FileReader(filename);
BufferedReader br = new BufferedReader(in);
String line;
String helm;
try {
while ((line = br.readLine()) != null) {
helm = line;
/* HELM1 notation has to be translated into HELM2 */
if (cmd.hasOption("translate")) {
ConverterHELM1ToHELM2 converter = new ConverterHELM1ToHELM2();
helm = converter.doConvert(helm);
LOG.info("HELM1 is translated to HELM2");
}
parser.parse(helm);
/* There are two different output options */
String output = "";
if (cmd.getOptionValue("output").equals("HELM2")) {
output = parser.getHELM2Notation().toHELM2();
} else if (cmd.getOptionValue("output").equals("JSON")) {
output = parser.getJSON();
}
System.out.println(output);
}
} finally {
br.close();
}
} catch (NullPointerException e) {
System.out.println("Please call the program with the following arguments: "
+ "\n"
+ "-inputHELM <"
+ options.getOption("inputHELM").getDescription()
+ ">\n"
+ "-output <"
+ options.getOption("output").getDescription()
+ ">\n-translate(optional) <"
+ options.getOption("translate").getDescription()
+ ">");
} catch (ParseException exp) {
System.out.println("Unexpected exception: " + exp.getMessage());
}
}
|
java
|
{
"resource": ""
}
|
q179994
|
StateMachineParser.checkPolymerId
|
test
|
public boolean checkPolymerId(String polymerId) {
LOG.debug("Validation of polymerID: " + polymerId);
String pattern = "PEPTIDE[1-9][0-9]*|RNA[1-9][0-9]*|CHEM[1-9][0-9]*|BLOB[1-9][0-9]*";
Pattern p = Pattern.compile(pattern, Pattern.CASE_INSENSITIVE);
Matcher m = p.matcher(polymerId);
if (m.matches()) {
LOG.debug("PolymerID is valid: " + polymerId);
return true;
}
LOG.debug("PolymerID is not valid: " + polymerId);
return false;
}
|
java
|
{
"resource": ""
}
|
q179995
|
StateMachineParser.checkPolymeridConnection
|
test
|
public boolean checkPolymeridConnection(String polymerId) {
LOG.debug("Validation of polymerID in the connection section:");
String ratio = "(:[1-9][0-9]*(\\.[0-9]+)?)?";
String id = "(PEPTIDE[1-9][0-9]*|RNA[1-9][0-9]*|CHEM[1-9][0-9]*|BLOB[1-9][0-9]*|G[1-9][0-9]*)";
String pattern = "(\\(" + id + ratio + "(," + id + ratio + ")+\\)" + ratio + "|" + id + ratio + ")";
Pattern p = Pattern.compile(pattern,Pattern.CASE_INSENSITIVE);
Matcher m = p.matcher(polymerId);
if (m.matches()) {
LOG.debug("PolymerID in the connection section is valid:");
return true;
}
LOG.debug("PolymerID in the connection section is not valid: " + polymerId);
return false;
}
|
java
|
{
"resource": ""
}
|
q179996
|
StateMachineParser.checkDetailsConnections
|
test
|
public boolean checkDetailsConnections(String d) {
LOG.debug("Validation of connection's details:");
String group = "\\((\\D|\\d)((,|\\+)(\\D|\\d))+\\)";
String partOne = "([1-9][0-9]*|\\D|\\?|" + group + ")";
String partTwo = "(R[1-9][0-9]*+|\\?)";
String element = partOne + ":" + partTwo;
String patternConnection = element + "-" + element;
String hydrogenBondPartner = partOne + ":pair";
String hydrogenBondPattern = hydrogenBondPartner + "-" + hydrogenBondPartner;
Pattern pConnection = Pattern.compile(patternConnection , Pattern.CASE_INSENSITIVE);
Matcher mConnection = pConnection.matcher(d);
Pattern pHydrogen = Pattern.compile(hydrogenBondPattern, Pattern.CASE_INSENSITIVE);
Matcher mHydrogen = pHydrogen.matcher(d);
if (mConnection.matches() || mHydrogen.matches()) {
LOG.debug("Connection's details are valid:");
return true;
}
LOG.debug("Connection's details are not valid: " + d);
return false;
}
|
java
|
{
"resource": ""
}
|
q179997
|
StateMachineParser.checkGroupId
|
test
|
public boolean checkGroupId(String d) {
Pattern p = Pattern.compile("G[1-9][0-9]*", Pattern.CASE_INSENSITIVE);
Matcher m = p.matcher(d);
LOG.debug("Validation of groupID:");
if (m.matches()) {
LOG.debug("GroupID is valid:");
return true;
}
LOG.debug("GroupID is not valid:");
return false;
}
|
java
|
{
"resource": ""
}
|
q179998
|
StateMachineParser.checkRepeating
|
test
|
public boolean checkRepeating(String str) {
String pattern = "\\d+|\\d+-\\d+";
if (str.matches(pattern)) {
return true;
}
return false;
}
|
java
|
{
"resource": ""
}
|
q179999
|
StateMachineParser.isPeptideOrRna
|
test
|
public boolean isPeptideOrRna() throws SimplePolymerSectionException {
if (polymerElements.size() >= 1) {
if (polymerElements.get(polymerElements.size() - 1).matches("(PEPTIDE[1-9][0-9]*+|RNA[1-9][0-9]*)")) {
return true;
}
return false;
} else {
throw new SimplePolymerSectionException("No Polymer Id is found");
}
}
|
java
|
{
"resource": ""
}
|
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