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q277800
infer_gaps_in_tree
test
def infer_gaps_in_tree(df_seq, tree, id_col='id', sequence_col='sequence'): """Adds a character matrix to DendroPy tree and infers gaps using Fitch's algorithm. Infer gaps in sequences at ancestral nodes. """ taxa = tree.taxon_namespace # Get alignment as fasta alignment = df_seq.phylo.to_fasta(id_col=id_col, id_only=True, sequence_col=sequence_col) # Build a Sequence data matrix from Dendropy data = dendropy.ProteinCharacterMatrix.get( data=alignment, schema="fasta", taxon_namespace=taxa) # Construct a map object between sequence data and tree data. taxon_state_sets_map = data.taxon_state_sets_map(gaps_as_missing=False) # Fitch algorithm to determine placement of gaps dendropy.model.parsimony.fitch_down_pass(tree.postorder_node_iter(), taxon_state_sets_map=taxon_state_sets_map) dendropy.model.parsimony.fitch_up_pass(tree.preorder_node_iter()) return tree
python
{ "resource": "" }
q277801
eval_step.nvim_io_recover
test
def nvim_io_recover(self, io: NvimIORecover[A]) -> NvimIO[B]: '''calls `map` to shift the recover execution to flat_map_nvim_io ''' return eval_step(self.vim)(io.map(lambda a: a))
python
{ "resource": "" }
q277802
install_jinja_translations
test
def install_jinja_translations(): """ Install our gettext and ngettext functions into Jinja2's environment. """ class Translation(object): """ We pass this object to jinja so it can find our gettext implementation. If we pass the GNUTranslation object directly, it won't have our context and whitespace stripping action. """ ugettext = staticmethod(ugettext) ungettext = staticmethod(ungettext) import jingo jingo.env.install_gettext_translations(Translation)
python
{ "resource": "" }
q277803
exclusive_ns
test
def exclusive_ns(guard: StateGuard[A], desc: str, thunk: Callable[..., NS[A, B]], *a: Any) -> Do: '''this is the central unsafe function, using a lock and updating the state in `guard` in-place. ''' yield guard.acquire() log.debug2(lambda: f'exclusive: {desc}') state, response = yield N.ensure_failure(thunk(*a).run(guard.state), guard.release) yield N.delay(lambda v: unsafe_update_state(guard, state)) yield guard.release() log.debug2(lambda: f'release: {desc}') yield N.pure(response)
python
{ "resource": "" }
q277804
_percent
test
def _percent(data, part, total): """ Calculate a percentage. """ try: return round(100 * float(data[part]) / float(data[total]), 1) except ZeroDivisionError: return 0
python
{ "resource": "" }
q277805
_get_cache_stats
test
def _get_cache_stats(server_name=None): """ Get stats info. """ server_info = {} for svr in mc_client.get_stats(): svr_info = svr[0].split(' ') svr_name = svr_info[0] svr_stats = svr[1] svr_stats['bytes_percent'] = _percent(svr_stats, 'bytes', 'limit_maxbytes') svr_stats['get_hit_rate'] = _percent(svr_stats, 'get_hits', 'cmd_get') svr_stats['get_miss_rate'] = _percent(svr_stats, 'get_misses', 'cmd_get') if server_name and server_name == svr_name: return svr_stats server_info[svr_name] = svr_stats return server_info
python
{ "resource": "" }
q277806
_get_cache_slabs
test
def _get_cache_slabs(server_name=None): """ Get slabs info. """ server_info = {} for svr in mc_client.get_slabs(): svr_info = svr[0].split(' ') svr_name = svr_info[0] if server_name and server_name == svr_name: return svr[1] server_info[svr_name] = svr[1] return server_info
python
{ "resource": "" }
q277807
_context_data
test
def _context_data(data, request=None): """ Add admin global context, for compatibility with Django 1.7 """ try: return dict(site.each_context(request).items() + data.items()) except AttributeError: return data
python
{ "resource": "" }
q277808
server_status
test
def server_status(request): """ Return the status of all servers. """ data = { 'cache_stats': _get_cache_stats(), 'can_get_slabs': hasattr(mc_client, 'get_slabs'), } return render_to_response('memcache_admin/server_status.html', data, RequestContext(request))
python
{ "resource": "" }
q277809
dashboard
test
def dashboard(request): """ Show the dashboard. """ # mc_client will be a dict if memcached is not configured if not isinstance(mc_client, dict): cache_stats = _get_cache_stats() else: cache_stats = None if cache_stats: data = _context_data({ 'title': _('Memcache Dashboard'), 'cache_stats': cache_stats, 'can_get_slabs': hasattr(mc_client, 'get_slabs'), 'REFRESH_RATE': SETTINGS['REFRESH_RATE'], }, request) template = 'memcache_admin/dashboard.html' else: data = _context_data({ 'title': _('Memcache Dashboard - Error'), 'error_message': _('Unable to connect to a memcache server.'), }, request) template = 'memcache_admin/dashboard_error.html' return render_to_response(template, data, RequestContext(request))
python
{ "resource": "" }
q277810
stats
test
def stats(request, server_name): """ Show server statistics. """ server_name = server_name.strip('/') data = _context_data({ 'title': _('Memcache Statistics for %s') % server_name, 'cache_stats': _get_cache_stats(server_name), }, request) return render_to_response('memcache_admin/stats.html', data, RequestContext(request))
python
{ "resource": "" }
q277811
slabs
test
def slabs(request, server_name): """ Show server slabs. """ data = _context_data({ 'title': _('Memcache Slabs for %s') % server_name, 'cache_slabs': _get_cache_slabs(server_name), }, request) return render_to_response('memcache_admin/slabs.html', data, RequestContext(request))
python
{ "resource": "" }
q277812
human_bytes
test
def human_bytes(value): """ Convert a byte value into a human-readable format. """ value = float(value) if value >= 1073741824: gigabytes = value / 1073741824 size = '%.2f GB' % gigabytes elif value >= 1048576: megabytes = value / 1048576 size = '%.2f MB' % megabytes elif value >= 1024: kilobytes = value / 1024 size = '%.2f KB' % kilobytes else: size = '%.2f B' % value return size
python
{ "resource": "" }
q277813
Environment.find_config
test
def find_config(self, children): """ Find a config in our children so we can fill in variables in our other children with its data. """ named_config = None found_config = None # first see if we got a kwarg named 'config', as this guy is special if 'config' in children: if type(children['config']) == str: children['config'] = ConfigFile(children['config']) elif isinstance(children['config'], Config): children['config'] = children['config'] elif type(children['config']) == dict: children['config'] = Config(data=children['config']) else: raise TypeError("Don't know how to turn {} into a Config".format(type(children['config']))) named_config = children['config'] # next check the other kwargs for k in children: if isinstance(children[k], Config): found_config = children[k] # if we still don't have a config, see if there's a directory with one for k in children: if isinstance(children[k], Directory): for j in children[k]._children: if j == 'config' and not named_config: named_config = children[k]._children[j] if isinstance(children[k]._children[j], Config): found_config = children[k]._children[j] if named_config: return named_config else: return found_config
python
{ "resource": "" }
q277814
Environment.add
test
def add(self, **kwargs): """ Add objects to the environment. """ for key in kwargs: if type(kwargs[key]) == str: self._children[key] = Directory(kwargs[key]) else: self._children[key] = kwargs[key] self._children[key]._env = self self._children[key].apply_config(ConfigApplicator(self.config)) self._children[key].prepare()
python
{ "resource": "" }
q277815
File.apply_config
test
def apply_config(self, applicator): """ Replace any config tokens in the file's path with values from the config. """ if type(self._fpath) == str: self._fpath = applicator.apply(self._fpath)
python
{ "resource": "" }
q277816
File.path
test
def path(self): """ Get the path to the file relative to its parent. """ if self._parent: return os.path.join(self._parent.path, self._fpath) else: return self._fpath
python
{ "resource": "" }
q277817
File.read
test
def read(self): """ Read and return the contents of the file. """ with open(self.path) as f: d = f.read() return d
python
{ "resource": "" }
q277818
File.write
test
def write(self, data, mode='w'): """ Write data to the file. `data` is the data to write `mode` is the mode argument to pass to `open()` """ with open(self.path, mode) as f: f.write(data)
python
{ "resource": "" }
q277819
LogFile.configure
test
def configure(self): """ Configure the Python logging module for this file. """ # build a file handler for this file handler = logging.FileHandler(self.path, delay=True) # if we got a format string, create a formatter with it if self._format: handler.setFormatter(logging.Formatter(self._format)) # if we got a string for the formatter, assume it's the name of a # formatter in the environment's config if type(self._formatter) == str: if self._env and self._env.config.logging.dict_config.formatters[self._formatter]: d = self._env.config.logging.dict_config.formatters[self._formatter].to_dict() handler.setFormatter(logging.Formatter(**d)) elif type(self._formatter) == dict: # if it's a dict it must be the actual formatter params handler.setFormatter(logging.Formatter(**self._formatter)) # add the file handler to whatever loggers were specified if len(self._loggers): for name in self._loggers: logging.getLogger(name).addHandler(handler) else: # none specified, just add it to the root logger logging.getLogger().addHandler(handler)
python
{ "resource": "" }
q277820
LockFile.create
test
def create(self): """ Create the file. If the file already exists an exception will be raised """ if not os.path.exists(self.path): open(self.path, 'a').close() else: raise Exception("File exists: {}".format(self.path))
python
{ "resource": "" }
q277821
Directory.apply_config
test
def apply_config(self, applicator): """ Replace any config tokens with values from the config. """ if type(self._path) == str: self._path = applicator.apply(self._path) for key in self._children: self._children[key].apply_config(applicator)
python
{ "resource": "" }
q277822
Directory.path
test
def path(self): """ Return the path to this directory. """ p = '' if self._parent and self._parent.path: p = os.path.join(p, self._parent.path) if self._base: p = os.path.join(p, self._base) if self._path: p = os.path.join(p, self._path) return p
python
{ "resource": "" }
q277823
Directory.remove
test
def remove(self, recursive=True, ignore_error=True): """ Remove the directory. """ try: if recursive or self._cleanup == 'recursive': shutil.rmtree(self.path) else: os.rmdir(self.path) except Exception as e: if not ignore_error: raise e
python
{ "resource": "" }
q277824
Directory.prepare
test
def prepare(self): """ Prepare the Directory for use in an Environment. This will create the directory if the create flag is set. """ if self._create: self.create() for k in self._children: self._children[k]._env = self._env self._children[k].prepare()
python
{ "resource": "" }
q277825
Directory.cleanup
test
def cleanup(self): """ Clean up children and remove the directory. Directory will only be removed if the cleanup flag is set. """ for k in self._children: self._children[k].cleanup() if self._cleanup: self.remove(True)
python
{ "resource": "" }
q277826
Directory.path_to
test
def path_to(self, path): """ Find the path to something inside this directory. """ return os.path.join(self.path, str(path))
python
{ "resource": "" }
q277827
Directory.list
test
def list(self): """ List the contents of the directory. """ return [File(f, parent=self) for f in os.listdir(self.path)]
python
{ "resource": "" }
q277828
Directory.write
test
def write(self, filename, data, mode='w'): """ Write to a file in the directory. """ with open(self.path_to(str(filename)), mode) as f: f.write(data)
python
{ "resource": "" }
q277829
Directory.read
test
def read(self, filename): """ Read a file from the directory. """ with open(self.path_to(str(filename))) as f: d = f.read() return d
python
{ "resource": "" }
q277830
Directory.add
test
def add(self, *args, **kwargs): """ Add objects to the directory. """ for key in kwargs: if isinstance(kwargs[key], str): self._children[key] = File(kwargs[key]) else: self._children[key] = kwargs[key] self._children[key]._parent = self self._children[key]._env = self._env added = [] for arg in args: if isinstance(arg, File): self._children[arg.name] = arg self._children[arg.name]._parent = self self._children[arg.name]._env = self._env elif isinstance(arg, str): f = File(arg) added.append(f) self._children[arg] = f self._children[arg]._parent = self self._children[arg]._env = self._env else: raise TypeError(type(arg)) # if we were passed a single file/filename, return the File object for convenience if len(added) == 1: return added[0] if len(args) == 1: return args[0]
python
{ "resource": "" }
q277831
State.save
test
def save(self): """ Save the state to a file. """ with open(self.path, 'w') as f: f.write(yaml.dump(dict(self.d)))
python
{ "resource": "" }
q277832
State.load
test
def load(self): """ Load a saved state file. """ if os.path.exists(self.path): with open(self.path, 'r') as f: self.d = yaml.safe_load(f.read().replace('\t', ' '*4))
python
{ "resource": "" }
q277833
State.cleanup
test
def cleanup(self): """ Clean up the saved state. """ if os.path.exists(self.path): os.remove(self.path)
python
{ "resource": "" }
q277834
PluginManager.load_plugins
test
def load_plugins(self, directory): """ Loads plugins from the specified directory. `directory` is the full path to a directory containing python modules which each contain a subclass of the Plugin class. There is no criteria for a valid plugin at this level - any python module found in the directory will be loaded. Only modules that implement a subclass of the Plugin class above will be collected. The directory will be traversed recursively. """ # walk directory for filename in os.listdir(directory): # path to file filepath = os.path.join(directory, filename) # if it's a file, load it modname, ext = os.path.splitext(filename) if os.path.isfile(filepath) and ext == '.py': file, path, descr = imp.find_module(modname, [directory]) if file: mod = imp.load_module(modname, file, path, descr) # if it's a directory, recurse into it if os.path.isdir(filepath): self.load_plugins(filepath)
python
{ "resource": "" }
q277835
update_dict
test
def update_dict(target, source): """ Recursively merge values from a nested dictionary into another nested dictionary. For example: >>> target = { ... 'thing': 123, ... 'thang': { ... 'a': 1, ... 'b': 2 ... } ... } >>> source = { ... 'thang': { ... 'a': 666, ... 'c': 777 ... } ... } >>> update_dict(target, source) >>> target { 'thing': 123, 'thang': { 'a': 666, 'b': 2, 'c': 777 } } """ for k,v in source.items(): if isinstance(v, dict) and k in target and isinstance(source[k], dict): update_dict(target[k], v) else: target[k] = v
python
{ "resource": "" }
q277836
ConfigNode._child
test
def _child(self, path): """ Return a ConfigNode object representing a child node with the specified relative path. """ if self._path: path = '{}.{}'.format(self._path, path) return ConfigNode(root=self._root, path=path)
python
{ "resource": "" }
q277837
ConfigNode._resolve_path
test
def _resolve_path(self, create=False): """ Returns a tuple of a reference to the last container in the path, and the last component in the key path. For example, with a self._value like this: { 'thing': { 'another': { 'some_leaf': 5, 'one_more': { 'other_leaf': 'x' } } } } And a self._path of: 'thing.another.some_leaf' This will return a tuple of a reference to the 'another' dict, and 'some_leaf', allowing the setter and casting methods to directly access the item referred to by the key path. """ # Split up the key path if type(self._path) == str: key_path = self._path.split('.') else: key_path = [self._path] # Start at the root node node = self._root._data nodes = [self._root._data] # Traverse along key path while len(key_path): # Get the next key in the key path key = key_path.pop(0) # See if the test could be an int for array access, if so assume it is try: key = int(key) except: pass # If the next level doesn't exist, create it if create: if type(node) == dict and key not in node: node[key] = {} elif type(node) == list and type(key) == int and len(node) < key: node.append([None for i in range(key-len(node))]) # Store the last node and traverse down the hierarchy nodes.append(node) try: node = node[key] except TypeError: if type(key) == int: raise IndexError(key) else: raise KeyError(key) return (nodes[-1], key)
python
{ "resource": "" }
q277838
ConfigNode._get_value
test
def _get_value(self): """ Get the value represented by this node. """ if self._path: try: container, last = self._resolve_path() return container[last] except KeyError: return None except IndexError: return None else: return self._data
python
{ "resource": "" }
q277839
ConfigNode.update
test
def update(self, data={}, options={}): """ Update the configuration with new data. This can be passed either or both `data` and `options`. `options` is a dict of keypath/value pairs like this (similar to CherryPy's config mechanism: >>> c.update(options={ ... 'server.port': 8080, ... 'server.host': 'localhost', ... 'admin.email': 'admin@lol' ... }) `data` is a dict of actual config data, like this: >>> c.update(data={ ... 'server': { ... 'port': 8080, ... 'host': 'localhost' ... }, ... 'admin': { ... 'email': 'admin@lol' ... } ... }) """ # Handle an update with a set of options like CherryPy does for key in options: self[key] = options[key] # Merge in any data in `data` if isinstance(data, ConfigNode): data = data._get_value() update_dict(self._get_value(), data)
python
{ "resource": "" }
q277840
ConfigFile.load
test
def load(self, reload=False): """ Load the config and defaults from files. """ if reload or not self._loaded: # load defaults if self._defaults_file and type(self._defaults_file) == str: self._defaults_file = File(self._defaults_file, parent=self._parent) defaults = {} if self._defaults_file: defaults = yaml.safe_load(self._defaults_file.read().replace('\t', ' ')) # load data data = {} if self.exists: data = yaml.safe_load(self.read().replace('\t', ' ')) # initialise with the loaded data self._defaults = defaults self._data = copy.deepcopy(self._defaults) self.update(data=data) # if specified, apply environment variables if self._apply_env: self.update(ConfigEnv(self._env_prefix)) self._loaded = True return self
python
{ "resource": "" }
q277841
ConfigApplicator.apply_to_str
test
def apply_to_str(self, obj): """ Apply the config to a string. """ toks = re.split('({config:|})', obj) newtoks = [] try: while len(toks): tok = toks.pop(0) if tok == '{config:': # pop the config variable, look it up var = toks.pop(0) val = self.config[var] # if we got an empty node, then it didn't exist if type(val) == ConfigNode and val == None: raise KeyError("No such config variable '{}'".format(var)) # add the value to the list newtoks.append(str(val)) # pop the '}' toks.pop(0) else: # not the start of a config block, just append it to the list newtoks.append(tok) return ''.join(newtoks) except IndexError: pass return obj
python
{ "resource": "" }
q277842
build_callback_url
test
def build_callback_url(request, urlname, message): """ Build Twilio callback url for confirming message delivery status :type message: OutgoingSMS """ location = reverse(urlname, kwargs={"pk": message.pk}) callback_domain = getattr(settings, "TWILIO_CALLBACK_DOMAIN", None) if callback_domain: url = "{}://{}{}".format( "https" if getattr(settings, "TWILIO_CALLBACK_USE_HTTPS", False) else "http", callback_domain, location ) elif request is not None: url = request.build_absolute_uri(location) else: raise ValueError( "Unable to build callback url. Configure TWILIO_CALLBACK_DOMAIN " "or pass request object to function call" ) return url
python
{ "resource": "" }
q277843
SocketConnection.process_input
test
def process_input(self): """Called when socket is read-ready""" try: pyngus.read_socket_input(self.connection, self.socket) except Exception as e: LOG.error("Exception on socket read: %s", str(e)) self.connection.close_input() self.connection.close() self.connection.process(time.time())
python
{ "resource": "" }
q277844
SocketConnection.send_output
test
def send_output(self): """Called when socket is write-ready""" try: pyngus.write_socket_output(self.connection, self.socket) except Exception as e: LOG.error("Exception on socket write: %s", str(e)) self.connection.close_output() self.connection.close() self.connection.process(time.time())
python
{ "resource": "" }
q277845
MyCaller._send_request
test
def _send_request(self): """Send a message containing the RPC method call """ msg = Message() msg.subject = "An RPC call!" msg.address = self._to msg.reply_to = self._reply_to msg.body = self._method msg.correlation_id = 5 # whatever... print("sending RPC call request: %s" % str(self._method)) # @todo send timeout self._sender.send(msg, self, None, time.time() + # 10) self._sender.send(msg, self)
python
{ "resource": "" }
q277846
read_socket_input
test
def read_socket_input(connection, socket_obj): """Read from the network layer and processes all data read. Can support both blocking and non-blocking sockets. Returns the number of input bytes processed, or EOS if input processing is done. Any exceptions raised by the socket are re-raised. """ count = connection.needs_input if count <= 0: return count # 0 or EOS while True: try: sock_data = socket_obj.recv(count) break except socket.timeout as e: LOG.debug("Socket timeout exception %s", str(e)) raise # caller must handle except socket.error as e: err = e.errno if err in [errno.EAGAIN, errno.EWOULDBLOCK, errno.EINTR]: # try again later return 0 # otherwise, unrecoverable, caller must handle LOG.debug("Socket error exception %s", str(e)) raise except Exception as e: # beats me... assume fatal LOG.debug("unknown socket exception %s", str(e)) raise # caller must handle if len(sock_data) > 0: count = connection.process_input(sock_data) else: LOG.debug("Socket closed") count = Connection.EOS connection.close_input() connection.close_output() return count
python
{ "resource": "" }
q277847
write_socket_output
test
def write_socket_output(connection, socket_obj): """Write data to the network layer. Can support both blocking and non-blocking sockets. Returns the number of output bytes sent, or EOS if output processing is done. Any exceptions raised by the socket are re-raised. """ count = connection.has_output if count <= 0: return count # 0 or EOS data = connection.output_data() if not data: # error - has_output > 0, but no data? return Connection.EOS while True: try: count = socket_obj.send(data) break except socket.timeout as e: LOG.debug("Socket timeout exception %s", str(e)) raise # caller must handle except socket.error as e: err = e.errno if err in [errno.EAGAIN, errno.EWOULDBLOCK, errno.EINTR]: # try again later return 0 # else assume fatal let caller handle it: LOG.debug("Socket error exception %s", str(e)) raise except Exception as e: # beats me... assume fatal LOG.debug("unknown socket exception %s", str(e)) raise if count > 0: connection.output_written(count) elif data: LOG.debug("Socket closed") count = Connection.EOS connection.close_output() connection.close_input() return count
python
{ "resource": "" }
q277848
_not_reentrant
test
def _not_reentrant(func): """Decorator that prevents callbacks from calling into link methods that are not reentrant """ def wrap(*args, **kws): link = args[0] if link._callback_lock.in_callback: m = "Link %s cannot be invoked from a callback!" % func raise RuntimeError(m) return func(*args, **kws) return wrap
python
{ "resource": "" }
q277849
_get_remote_settle_modes
test
def _get_remote_settle_modes(pn_link): """Return a map containing the settle modes as provided by the remote. Skip any default value. """ modes = {} snd = pn_link.remote_snd_settle_mode if snd == proton.Link.SND_UNSETTLED: modes['snd-settle-mode'] = 'unsettled' elif snd == proton.Link.SND_SETTLED: modes['snd-settle-mode'] = 'settled' if pn_link.remote_rcv_settle_mode == proton.Link.RCV_SECOND: modes['rcv-settle-mode'] = 'second' return modes
python
{ "resource": "" }
q277850
_Link.configure
test
def configure(self, target_address, source_address, handler, properties): """Assign addresses, properties, etc.""" self._handler = handler self._properties = properties dynamic_props = None if properties: dynamic_props = properties.get("dynamic-node-properties") mode = _dist_modes.get(properties.get("distribution-mode")) if mode is not None: self._pn_link.source.distribution_mode = mode mode = _snd_settle_modes.get(properties.get("snd-settle-mode")) if mode is not None: self._pn_link.snd_settle_mode = mode mode = _rcv_settle_modes.get(properties.get("rcv-settle-mode")) if mode is not None: self._pn_link.rcv_settle_mode = mode if target_address is None: if not self._pn_link.is_sender: raise Exception("Dynamic target not allowed") self._pn_link.target.dynamic = True if dynamic_props: self._pn_link.target.properties.clear() self._pn_link.target.properties.put_dict(dynamic_props) elif target_address: self._pn_link.target.address = target_address if source_address is None: if not self._pn_link.is_receiver: raise Exception("Dynamic source not allowed") self._pn_link.source.dynamic = True if dynamic_props: self._pn_link.source.properties.clear() self._pn_link.source.properties.put_dict(dynamic_props) elif source_address: self._pn_link.source.address = source_address
python
{ "resource": "" }
q277851
_Link.source_address
test
def source_address(self): """Return the authorative source of the link.""" # If link is a sender, source is determined by the local # value, else use the remote. if self._pn_link.is_sender: return self._pn_link.source.address else: return self._pn_link.remote_source.address
python
{ "resource": "" }
q277852
_Link.target_address
test
def target_address(self): """Return the authorative target of the link.""" # If link is a receiver, target is determined by the local # value, else use the remote. if self._pn_link.is_receiver: return self._pn_link.target.address else: return self._pn_link.remote_target.address
python
{ "resource": "" }
q277853
_Link._session_closed
test
def _session_closed(self): """Remote has closed the session used by this link.""" # if link not already closed: if self._endpoint_state & proton.Endpoint.REMOTE_ACTIVE: # simulate close received self._process_remote_state() elif self._endpoint_state & proton.Endpoint.REMOTE_UNINIT: # locally created link, will never come up self._failed = True self._link_failed("Parent session closed.")
python
{ "resource": "" }
q277854
_SessionProxy.new_sender
test
def new_sender(self, name): """Create a new sender link.""" pn_link = self._pn_session.sender(name) return self.request_sender(pn_link)
python
{ "resource": "" }
q277855
_SessionProxy.request_sender
test
def request_sender(self, pn_link): """Create link from request for a sender.""" sl = SenderLink(self._connection, pn_link) self._links.add(sl) return sl
python
{ "resource": "" }
q277856
_SessionProxy.new_receiver
test
def new_receiver(self, name): """Create a new receiver link.""" pn_link = self._pn_session.receiver(name) return self.request_receiver(pn_link)
python
{ "resource": "" }
q277857
_SessionProxy.request_receiver
test
def request_receiver(self, pn_link): """Create link from request for a receiver.""" rl = ReceiverLink(self._connection, pn_link) self._links.add(rl) return rl
python
{ "resource": "" }
q277858
_SessionProxy.link_destroyed
test
def link_destroyed(self, link): """Link has been destroyed.""" self._links.discard(link) if not self._links: # no more links LOG.debug("destroying unneeded session") self._pn_session.close() self._pn_session.free() self._pn_session = None self._connection = None
python
{ "resource": "" }
q277859
_SessionProxy._ep_need_close
test
def _ep_need_close(self): """Peer has closed its end of the session.""" LOG.debug("Session %s close requested - closing...", self._name) links = self._links.copy() # may modify _links for link in links: link._session_closed()
python
{ "resource": "" }
q277860
Endpoint._process_endpoint_event
test
def _process_endpoint_event(self, event): """Called when the Proton Engine generates an endpoint state change event. """ state_fsm = Endpoint._FSM[self._state] entry = state_fsm.get(event) if not entry: # protocol error: invalid event for current state old_state = self._state self._state = Endpoint.STATE_ERROR self._ep_error("invalid event=%s in state=%s" % (Endpoint.EVENT_NAMES[event], Endpoint.STATE_NAMES[old_state])) return self._state = entry[0] if entry[1]: entry[1](self)
python
{ "resource": "" }
q277861
HighlightExtension.extendMarkdown
test
def extendMarkdown(self, md, md_globals): """Modifies inline patterns.""" mark_tag = SimpleTagPattern(MARK_RE, 'mark') md.inlinePatterns.add('mark', mark_tag, '_begin')
python
{ "resource": "" }
q277862
ReceiverEventHandler.receiver_remote_closed
test
def receiver_remote_closed(self, receiver_link, pn_condition): """Peer has closed its end of the link.""" LOG.debug("receiver_remote_closed condition=%s", pn_condition) receiver_link.close() self.done = True
python
{ "resource": "" }
q277863
ReceiverEventHandler.receiver_failed
test
def receiver_failed(self, receiver_link, error): """Protocol error occurred.""" LOG.warn("receiver_failed error=%s", error) receiver_link.close() self.done = True
python
{ "resource": "" }
q277864
get_host_port
test
def get_host_port(server_address): """Parse the hostname and port out of the server_address.""" regex = re.compile(r"^amqp://([a-zA-Z0-9.]+)(:([\d]+))?$") x = regex.match(server_address) if not x: raise Exception("Bad address syntax: %s" % server_address) matches = x.groups() host = matches[0] port = int(matches[2]) if matches[2] else None return host, port
python
{ "resource": "" }
q277865
connect_socket
test
def connect_socket(host, port, blocking=True): """Create a TCP connection to the server.""" addr = socket.getaddrinfo(host, port, socket.AF_INET, socket.SOCK_STREAM) if not addr: raise Exception("Could not translate address '%s:%s'" % (host, str(port))) my_socket = socket.socket(addr[0][0], addr[0][1], addr[0][2]) if not blocking: my_socket.setblocking(0) try: my_socket.connect(addr[0][4]) except socket.error as e: if e.errno != errno.EINPROGRESS: raise return my_socket
python
{ "resource": "" }
q277866
server_socket
test
def server_socket(host, port, backlog=10): """Create a TCP listening socket for a server.""" addr = socket.getaddrinfo(host, port, socket.AF_INET, socket.SOCK_STREAM) if not addr: raise Exception("Could not translate address '%s:%s'" % (host, str(port))) my_socket = socket.socket(addr[0][0], addr[0][1], addr[0][2]) my_socket.setblocking(0) # 0=non-blocking try: my_socket.bind(addr[0][4]) my_socket.listen(backlog) except socket.error as e: if e.errno != errno.EINPROGRESS: raise return my_socket
python
{ "resource": "" }
q277867
Container.need_processing
test
def need_processing(self): """A utility to help determine which connections need processing. Returns a triple of lists containing those connections that 0) need to read from the network, 1) need to write to the network, 2) waiting for pending timers to expire. The timer list is sorted with the connection next expiring at index 0. """ readers = [] writers = [] timer_heap = [] for c in iter(self._connections.values()): if c.needs_input > 0: readers.append(c) if c.has_output > 0: writers.append(c) if c.deadline: heapq.heappush(timer_heap, (c.next_tick, c)) timers = [] while timer_heap: x = heapq.heappop(timer_heap) timers.append(x[1]) return (readers, writers, timers)
python
{ "resource": "" }
q277868
Connection._not_reentrant
test
def _not_reentrant(func): """Decorator that prevents callbacks from calling into methods that are not reentrant """ def wrap(self, *args, **kws): if self._callback_lock and self._callback_lock.in_callback: m = "Connection %s cannot be invoked from a callback!" % func raise RuntimeError(m) return func(self, *args, **kws) return wrap
python
{ "resource": "" }
q277869
Connection.process
test
def process(self, now): """Perform connection state processing.""" if self._pn_connection is None: LOG.error("Connection.process() called on destroyed connection!") return 0 # do nothing until the connection has been opened if self._pn_connection.state & proton.Endpoint.LOCAL_UNINIT: return 0 if self._pn_sasl and not self._sasl_done: # wait until SASL has authenticated if (_PROTON_VERSION < (0, 10)): if self._pn_sasl.state not in (proton.SASL.STATE_PASS, proton.SASL.STATE_FAIL): LOG.debug("SASL in progress. State=%s", str(self._pn_sasl.state)) if self._handler: with self._callback_lock: self._handler.sasl_step(self, self._pn_sasl) return self._next_deadline self._sasl_done = True if self._handler: with self._callback_lock: self._handler.sasl_done(self, self._pn_sasl, self._pn_sasl.outcome) else: if self._pn_sasl.outcome is not None: self._sasl_done = True if self._handler: with self._callback_lock: self._handler.sasl_done(self, self._pn_sasl, self._pn_sasl.outcome) # process timer events: timer_deadline = self._expire_timers(now) transport_deadline = self._pn_transport.tick(now) if timer_deadline and transport_deadline: self._next_deadline = min(timer_deadline, transport_deadline) else: self._next_deadline = timer_deadline or transport_deadline # process events from proton: pn_event = self._pn_collector.peek() while pn_event: # LOG.debug("pn_event: %s received", pn_event.type) if _Link._handle_proton_event(pn_event, self): pass elif self._handle_proton_event(pn_event): pass elif _SessionProxy._handle_proton_event(pn_event, self): pass self._pn_collector.pop() pn_event = self._pn_collector.peek() # check for connection failure after processing all pending # engine events: if self._error: if self._handler: # nag application until connection is destroyed self._next_deadline = now with self._callback_lock: self._handler.connection_failed(self, self._error) elif (self._endpoint_state == self._CLOSED and self._read_done and self._write_done): # invoke closed callback after endpoint has fully closed and # all pending I/O has completed: if self._handler: with self._callback_lock: self._handler.connection_closed(self) return self._next_deadline
python
{ "resource": "" }
q277870
Connection.output_data
test
def output_data(self): """Get a buffer of data that needs to be written to the network. """ c = self.has_output if c <= 0: return None try: buf = self._pn_transport.peek(c) except Exception as e: self._connection_failed(str(e)) return None return buf
python
{ "resource": "" }
q277871
Connection.create_sender
test
def create_sender(self, source_address, target_address=None, event_handler=None, name=None, properties=None): """Factory method for Sender links.""" ident = name or str(source_address) if ident in self._sender_links: raise KeyError("Sender %s already exists!" % ident) session = _SessionProxy("session-%s" % ident, self) session.open() sl = session.new_sender(ident) sl.configure(target_address, source_address, event_handler, properties) self._sender_links[ident] = sl return sl
python
{ "resource": "" }
q277872
Connection.reject_sender
test
def reject_sender(self, link_handle, pn_condition=None): """Rejects the SenderLink, and destroys the handle.""" link = self._sender_links.get(link_handle) if not link: raise Exception("Invalid link_handle: %s" % link_handle) link.reject(pn_condition) # note: normally, link.destroy() cannot be called from a callback, # but this link was never made available to the application so this # link is only referenced by the connection link.destroy()
python
{ "resource": "" }
q277873
Connection.create_receiver
test
def create_receiver(self, target_address, source_address=None, event_handler=None, name=None, properties=None): """Factory method for creating Receive links.""" ident = name or str(target_address) if ident in self._receiver_links: raise KeyError("Receiver %s already exists!" % ident) session = _SessionProxy("session-%s" % ident, self) session.open() rl = session.new_receiver(ident) rl.configure(target_address, source_address, event_handler, properties) self._receiver_links[ident] = rl return rl
python
{ "resource": "" }
q277874
Connection._connection_failed
test
def _connection_failed(self, error="Error not specified!"): """Clean up after connection failure detected.""" if not self._error: LOG.error("Connection failed: %s", str(error)) self._error = error
python
{ "resource": "" }
q277875
Connection._ep_active
test
def _ep_active(self): """Both ends of the Endpoint have become active.""" LOG.debug("Connection is up") if self._handler: with self._callback_lock: self._handler.connection_active(self)
python
{ "resource": "" }
q277876
Connection._ep_need_close
test
def _ep_need_close(self): """The remote has closed its end of the endpoint.""" LOG.debug("Connection remotely closed") if self._handler: cond = self._pn_connection.remote_condition with self._callback_lock: self._handler.connection_remote_closed(self, cond)
python
{ "resource": "" }
q277877
Connection._ep_error
test
def _ep_error(self, error): """The endpoint state machine failed due to protocol error.""" super(Connection, self)._ep_error(error) self._connection_failed("Protocol error occurred.")
python
{ "resource": "" }
q277878
twilio_view
test
def twilio_view(f): """This decorator provides several helpful shortcuts for writing Twilio views. - It ensures that only requests from Twilio are passed through. This helps protect you from forged requests. - It ensures your view is exempt from CSRF checks via Django's @csrf_exempt decorator. This is necessary for any view that accepts POST requests from outside the local domain (eg: Twilio's servers). - It allows your view to (optionally) return TwiML to pass back to Twilio's servers instead of building a ``HttpResponse`` object manually. - It allows your view to (optionally) return any ``twilio.Verb`` object instead of building a ``HttpResponse`` object manually. Usage:: from twilio.twiml import Response @twilio_view def my_view(request): r = Response() r.sms("Thanks for the SMS message!") return r """ @csrf_exempt @wraps(f) def decorator(request, *args, **kwargs): # Attempt to gather all required information to allow us to check the # incoming HTTP request for forgery. If any of this information is not # available, then we'll throw a HTTP 403 error (forbidden). # Ensure the request method is POST if request.method != "POST": logger.error("Twilio: Expected POST request", extra={"request": request}) return HttpResponseNotAllowed(request.method) if not getattr(settings, "TWILIO_SKIP_SIGNATURE_VALIDATION"): # Validate the request try: validator = RequestValidator(settings.TWILIO_AUTH_TOKEN) url = request.build_absolute_uri() # Ensure the original requested url is tested for validation # Prevents breakage when processed behind a proxy server if "HTTP_X_FORWARDED_SERVER" in request.META: protocol = "https" if request.META["HTTP_X_TWILIO_SSL"] == "Enabled" else "http" url = "{0}://{1}{2}".format( protocol, request.META["HTTP_X_FORWARDED_SERVER"], request.META["REQUEST_URI"] ) signature = request.META["HTTP_X_TWILIO_SIGNATURE"] except (AttributeError, KeyError) as e: logger.exception("Twilio: Missing META param", extra={"request": request}) return HttpResponseForbidden("Missing META param: %s" % e) # Now that we have all the required information to perform forgery # checks, we'll actually do the forgery check. if not validator.validate(url, request.POST, signature): logger.error( "Twilio: Invalid url signature %s - %s - %s", url, request.POST, signature, extra={"request": request} ) return HttpResponseForbidden("Invalid signature") # Run the wrapped view, and capture the data returned. response = f(request, *args, **kwargs) # If the view returns a string (or a ``twilio.Verb`` object), we'll # assume it is XML TwilML data and pass it back with the appropriate # mimetype. We won't check the XML data because that would be too time # consuming for every request. Instead, we'll let the errors pass # through to be dealt with by the developer. if isinstance(response, six.text_type): return HttpResponse(response, mimetype="application/xml") elif isinstance(response, Verb): return HttpResponse(force_text(response), mimetype="application/xml") else: return response return decorator
python
{ "resource": "" }
q277879
PDFColor._get_color_string
test
def _get_color_string(self): """Adobe output string for defining colors""" s = '' if self.color_type == 'd': if self.name is "black": s = '%.3f G' % 0 else: s = '%.3f %.3f %.3f RG' % ( self.red / 255.0, self.green / 255.0, self.blue / 255.0) elif self.color_type == 'f' or self.color_type == 't': if self.name is "black": s = '%.3f g' % 0 else: s = '%.3f %.3f %.3f rg' % ( self.red / 255.0, self.green / 255.0, self.blue / 255.0) return s
python
{ "resource": "" }
q277880
FontLoader.get_ttf
test
def get_ttf(self): """ Given a search path, find file with requested extension """ font_dict = {} families = [] rootdirlist = string.split(self.search_path, os.pathsep) #for rootdir in rootdirlist: # rootdir = os.path.expanduser(rootdir) for dirName, subdirList, filelist in itertools.chain.from_iterable(os.walk(path) for path in rootdirlist): for item in filelist: root, ext = os.path.splitext(item) if ext == '.ttf': if root[0].lower() in english: source = os.path.join(dirName, item) name = root.lower().replace('_', ' ') if ' bold' in name: name = name.replace(' bold', '_bold') if ' italic' in name: name = name.replace(' italic', '_italic') elif 'bold' in name: name = name.replace('bold', '_bold') if 'italic' in name: name = name.replace('italic', '_italic') elif ' italic' in name: name = name.replace(' italic', '_italic') elif 'italic' in name: name = name.replace('italic', '_italic') elif 'oblique' in name: name = name.replace('oblique', '_italic') else: families.append(name) font_dict[name] = source else: source = os.path.join(dirName, item) name = root.lower().replace('_', ' ') font_dict[name] = source families.append(name) self.font_dict = font_dict self.families = families
python
{ "resource": "" }
q277881
_Session._set_compression
test
def _set_compression(self, value): """ May be used to compress PDF files. Code is more readable for testing and inspection if not compressed. Requires a boolean. """ if isinstance(value, bool): self.compression = value else: raise Exception( TypeError, "%s is not a valid option for compression" % value)
python
{ "resource": "" }
q277882
_Session._add_object
test
def _add_object(self, flag=None): """ The flag is a simple integer to force the placement of the object into position in the object array. Used for overwriting the placeholder objects. """ self.offset = len(self.buffer) if flag is None: objnum = len(self.objects) obj = _PDFObject(objnum, self.offset) self.objects.append(obj) else: objnum = flag obj = _PDFObject(objnum, self.offset) self.objects[flag] = obj self._out(str(objnum) + ' 0 obj') return obj
python
{ "resource": "" }
q277883
_Session._out
test
def _out(self, stream, page=None): """ Stores the pdf code in a buffer. If it is page related, provide the page object. """ if page is not None: page.buffer += str(stream) + "\n" else: self.buffer += str(stream) + "\n"
python
{ "resource": "" }
q277884
_Session._put_stream
test
def _put_stream(self, stream): """ Creates a PDF text stream sandwich. """ self._out('stream') self._out(stream) self._out('endstream')
python
{ "resource": "" }
q277885
_Session._add_page
test
def _add_page(self, text): """ Helper function for PDFText, to have the document add a page, and retry adding a large block of text that would otherwise have been to long for the page. """ save_cursor = self.parent.document.page.cursor.copy() save_cursor.x_reset() save_cursor.y_reset() self.parent.document.add_page() self.parent.document.set_cursor(save_cursor) self.parent.document.add_text(text)
python
{ "resource": "" }
q277886
PDFDocument._set_color_scheme
test
def _set_color_scheme(self, draw_color=None, fill_color=None, text_color=None): """ Default color object is black letters & black lines.""" if draw_color is None: draw_color = PDFColor() draw_color._set_type('d') if fill_color is None: fill_color = PDFColor() fill_color._set_type('f') if text_color is None: text_color = PDFColor() text_color._set_type('t') self.draw_color = draw_color self.fill_color = fill_color self.text_color = text_color
python
{ "resource": "" }
q277887
PDFDocument._set_default_font
test
def _set_default_font(self): """ Internal method to set the initial default font. Change the font using set_font method.""" self.font = PDFFont(self.session) self.font._set_index() self.fonts.append(self.font) self.fontkeys.append(self.font.font_key)
python
{ "resource": "" }
q277888
PDFDocument.add_page
test
def add_page(self, page=None): """ May generate and add a PDFPage separately, or use this to generate a default page.""" if page is None: self.page = PDFPage(self.orientation_default, self.layout_default, self.margins) else: self.page = page self.page._set_index(len(self.pages)) self.pages.append(self.page) currentfont = self.font self.set_font(font=currentfont) self.session._reset_colors()
python
{ "resource": "" }
q277889
PDFDocument.set_font_size
test
def set_font_size(self, size): """Convenience method for just changing font size.""" if self.font.font_size == size: pass else: self.font._set_size(size)
python
{ "resource": "" }
q277890
PDFDocument.add_text
test
def add_text(self, text, cursor=None, justification=None): """ Input text, short or long. Writes in order, within the defined page boundaries. Sequential add_text commands will print without additional whitespace. """ if cursor is None: cursor = self.page.cursor text = re.sub("\s\s+" , " ", text) if justification is None: justification = self.justification if '\n' in text: text_list = text.split('\n') for text in text_list: PDFText(self.session, self.page, text, self.font, self.text_color, cursor, justification, self.double_spacing) self.add_newline() else: PDFText(self.session, self.page, text, self.font, self.text_color, cursor, justification, self.double_spacing)
python
{ "resource": "" }
q277891
PDFDocument.add_newline
test
def add_newline(self, number=1): """ Starts over again at the new line. If number is specified, it will leave multiple lines.""" if isinstance(number, int): try: self.page._add_newline(self.font, number, self.double_spacing) except ValueError: self.add_page() else: raise TypeError("Number of newlines must be an integer.")
python
{ "resource": "" }
q277892
PDFDocument.add_pie_chart
test
def add_pie_chart(self, data, cursor, width, height, title=None, data_type="raw", fill_colors=None, labels=False, background=None, legend=None): """ Data type may be "raw" or "percent" """ save_draw_color = self.draw_color save_fill_color = self.fill_color chart = PDFPieChart(self.session, self.page, data, cursor, width, height, title, data_type, fill_colors, labels, background, legend) self.set_draw_color(save_draw_color) self.set_fill_color(save_fill_color)
python
{ "resource": "" }
q277893
PDFDocument._output_pages
test
def _output_pages(self): """ Called by the PDFLite object to prompt creating the page objects.""" if not self.orientation_changes: self._get_orientation_changes() # Page for page in self.pages: obj = self.session._add_object() self.session._out('<</Type /Page') self.session._out('/Parent 1 0 R') if self.orientation_changes: self.session._out('/MediaBox [0 0 %.2f %.2f]' % (page.width, page.height)) self.session._out('/Resources 2 0 R') self.session._out('/Group <</Type /Group /S /Transparency /CS /DeviceRGB>>') self.session._out('/Contents %s 0 R>>' % (obj.id + 1)) self.session._out('endobj') # Page content self.session._add_object() if self.session.compression is True: textfilter = ' /Filter /FlateDecode ' page._compress() else: textfilter = '' self.session._out('<<%s/Length %s >>' % (textfilter, len(page.buffer))) self.session._put_stream(page.buffer) self.session._out('endobj')
python
{ "resource": "" }
q277894
PDFDocument._get_orientation_changes
test
def _get_orientation_changes(self): """ Returns a list of the pages that have orientation changes.""" self.orientation_changes = [] for page in self.pages: if page.orientation_change is True: self.orientation_changes.append(page.index) else: pass return self.orientation_changes
python
{ "resource": "" }
q277895
PDFDocument._output_fonts
test
def _output_fonts(self): """ Called by the PDFLite object to prompt creating the font objects.""" self.session._save_object_number() self._output_encoding_diffs() self._output_font_files() for font in self.fonts: obj = self.session._add_object() font._set_number(obj.id) font._output()
python
{ "resource": "" }
q277896
PDFDocument._output_images
test
def _output_images(self): """ Creates reference images, that can be drawn throughout the document.""" for image in self.images: obj = self.session._add_object() image._set_number(obj.id) image._output()
python
{ "resource": "" }
q277897
PDFImage._output
test
def _output(self): """ Prompts the creating of image objects. """ self.session._out('<</Type /XObject') self.session._out('/Subtype /Image') self.session._out('/Width %s' % self.width) self.session._out('/Height %s' % self.height) if self.colorspace is 'Indexed': self.session._out('/ColorSpace [/Indexed /DeviceRGB %s %s 0 R' % (self.pal, self.number + 1)) else: self.session._out('/ColorSpace /%s' % self.colorspace) if self.colorspace is 'DeviceCMYK': self.session._out('/Decode [1 0 1 0 1 0 1 0]') self.session._out('/BitsPerComponent %s' % self.bits_per_component) if self.filter: self.session._out('/Filter /%s' % self.filter) if self.decode: self.session._out('/DecodeParms << %s >>' % self.decode) if self.transparent: self.session._out('/Mask [%s]' % self.transparent_string) if self.soft_mask: self.session._out('/SMask %s 0 R' % (self.number + 1)) self.session._out('/Length %s >>' % self.size) self.session._put_stream(self.image_data) self.session._out('endobj') if self.colorspace is 'Indexed': self.session._out('<<%s /Length %s >>' % (self.palette_filter, self.palette_length)) self.session._put_stream(self.palette) self.session._out('endobj') if isinstance(self.soft_mask, PDFImage): obj = self.session._add_object() self.soft_mask._set_number(obj.id) self.soft_mask._output()
python
{ "resource": "" }
q277898
PDFTransform.transform
test
def transform(self, a, b, c, d, e, f): """ Adjust the current transformation state of the current graphics state matrix. Not recommended for the faint of heart. """ a0, b0, c0, d0, e0, f0 = self._currentMatrix self._currentMatrix = (a0 * a + c0 * b, b0 * a + d0 * b, a0 * c + c0 * d, b0 * c + d0 * d, a0 * e + c0 * f + e0, b0 * e + d0 * f + f0) a1, b1, c1, d1, e1, f1 = self._currentMatrix self.session._out('%.2f %.2f %.2f %.2f %.2f %.2f cm' % (a1, b1, c1, d1, e1, f1), self.page)
python
{ "resource": "" }
q277899
PDFTransform.absolute_position
test
def absolute_position(self, x, y): """return the absolute position of x,y in user space w.r.t. default user space""" (a, b, c, d, e, f) = self._currentMatrix xp = a * x + c * y + e yp = b * x + d * y + f return xp, yp
python
{ "resource": "" }