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DNA-LLM
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virus_detailed_clean_image

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train · 1k rows

seq stringlengths 197 288k	seq_len int64 197 288k	id stringlengths 8 11	name stringlengths 8 11	host stringlengths 0 39	species stringlengths 9 95	organism_name stringlengths 0 53	location_in_host stringclasses 34 values	family stringclasses 102 values	genus stringlengths 8 21	molecule_type stringclasses 13 values	decribtion_full stringlengths 252 2.03k	two_d sequencelengths 2.05k 2.05k	img sequencelengths 128 128
"GAAATTAAAACAGCTCTGGGGTTGTTCCCACCCCAGAGGCCCACGTGGCGGCTAGTACACTGGTATTACGGTACCCTTGTACGCCTGTTTTACACCCCT(...TRUNCATED)	7,462	AB769152.1	AB769152.1	Homo sapiens	Coxsackievirus A24	Enterovirus C	eye	Picornaviridae	Enterovirus	ssRNA(+)	"AB769152.1 \|Coxsackievirus A24 genomic RNA, complete genome, strain: CA24v/Okinawa/5/2011\|set:AB769(...TRUNCATED)	[[0.8660254,-0.5],[2.6885056095355484,-2.6829551146509534],[4.517326884549595,-3.3165473360243003],[(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"ACACAGAGACGCCCAGATGAACTTGGAAGTGCTTTGTGGTAGGATAAACGTGGAGAATGGGCTGTCTCTTGGAGAACCAGGCCTGTACGACCAAATCTA(...TRUNCATED)	6,368	OM453149.1	OM453149.1	Homo sapiens	Severe fever with thrombocytopenia syndrome virus	Bandavirus dabieense	blood	Phenuiviridae	Bandavirus	ssRNA(+/-)	"OM453149.1 \|Severe fever with thrombocytopenia syndrome virus isolate 14-China_Henan-76 segment L, (...TRUNCATED)	[[0.5,-0.8660254],[2.79990137203834,-0.7571317274415225],[4.770443986422364,-3.081868979329931],[7.1(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"GATCAAAAGAGTAACAGTCCTTGTACCAACTTTTCACAATCAAAATAGAACGCGAATCTTGACTGCTCTACCTCAACTTTTTACTTACTTTAACGTTGT(...TRUNCATED)	1,779	NC_007242.1	NC_007242.1	Vicia faba	Vicia cryptic virus	Vicia cryptic virus		Partitiviridae	Alphapartitivirus	dsRNA	"NC_007242.1 \|Vicia cryptic virus RNA2, complete genome\|GCF_000865745.1\|Vicia cryptic virus\|\|2005-08(...TRUNCATED)	[[0.8660254,-0.5],[1.316355300795529,-1.3983611567372618],[1.6928207623905336,-0.7721509229770409],[(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"AGCGCTGGGGCTTATTATTACCCCCAGCGCTCGGGACGGGACATTTGCATCTATAAATAGACCTCCCCCCTCTCCATTACAAGATCATCATCGACGACA(...TRUNCATED)	1,111	FJ605506.1	FJ605506.1	Musa acuminata	Banana bunchy top virus	Babuvirus musae		Nanoviridae	Babuvirus	ssDNA(+)	"FJ605506.1 \|Banana bunchy top virus isolate Bihar segment DNA1, complete sequence\|set:3423337ceac3c(...TRUNCATED)	[[0.5,-0.8660254],[0.9663767953592927,-1.4555698623237803],[1.4399660014410798,-1.3173932088630804],(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"GATTTCTCGACCTTGTTCGTTTATCTGGTGACTTGCGCTAACTGTTGCTTTGCGTAGGGAATTTCTCTCCATAACTATTATCTTTAGATTTGGGGTTTG(...TRUNCATED)	4,760	OL472234.1	OL472234.1	Solanum lycopersicum	Tomato bushy stunt virus	Tombusvirus lycopersici		Tombusviridae	Tombusvirus	ssRNA(+)	"OL472234.1 \|MAG: Tomato bushy stunt virus isolate STR20ST1, complete genome\|\|Tomato bushy stunt vir(...TRUNCATED)	[[0.8660254,-0.5],[2.035921308034089,-0.2035248897440482],[3.4454041008082097,1.5455004708683917],[5(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"AAGTCTTAAGTACCCCTACCCGTATTTAGAGTCTATGTCTTATTACAGACGCTCTTATTACCCTCGTAGGCGATCCTACGGTAGGCGCAGATACTACAG(...TRUNCATED)	2,452	KP233188.1	KP233188.1	Homo sapiens	Human smacovirus 1	Human smacovirus 1	feces	Smacoviridae	Huchismacovirus	ssDNA	"KP233188.1 \|Human smacovirus 1 isolate Virginia/12/2011/Albemarle/G16, complete genome\|set:KP233188(...TRUNCATED)	[[0.5,-0.8660254],[1.1815148677030167,-1.920340702914468],[2.0654643223440274,-1.9637513302190115],[(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"ATGACTCGAGTCAAGAAACTCCCAGTGCCAACAAACCCGCCCATGCATCATAGTCTCGATTCACCATTTCTAAACCCTGAACATGCTACAGGGAAGATC(...TRUNCATED)	1,896	KU342687.1	KU342687.1	Phoca vitulina	Phocine morbillivirus	Morbillivirus phocae		Paramyxoviridae	Morbillivirus	ssRNA(-)	"KU342687.1 \|Phocine morbillivirus strain PDV/NL/2014 fusion protein (F) gene, complete cds\|set:KU34(...TRUNCATED)	[[0.5,-0.8660254],[0.9347512163070347,-0.009955895797679193],[1.7635416231955439,-0.3628357928684037(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"ACCAGCGCACTTCGGCAGCGGCAGCACCTCGGCAGCACCTCAGCAGCAACATGCCCAGCAAGAAGAGTGGAAGAAGCGGACCCCAACCACATAAAAGGT(...TRUNCATED)	1,767	KY569375.1	KY569375.1	Sus scrofa	Porcine circovirus 2	Circovirus porcine2		Circoviridae	Circovirus	ssDNA(+/-)	"KY569375.1 \|Porcine circovirus 2 strain BDBY2016, complete genome\|set:KY569375\|Porcine circovirus 2(...TRUNCATED)	[[0.5,-0.8660254],[1.230417808303562,-0.48394441521636367],[2.0369591800686226,0.12244581246885994],(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"GTTAAAAAATCCTTGAGTCATGGAGCAAAAGCAACGTAGATTTACTAAAAACATTTTTGTATTGGACGCAAATGCTAAAACATTATGCGGAGCGATCGC(...TRUNCATED)	1,125	JX272476.1	JX272476.1		Bluetongue virus 15	Bluetongue virus		Sedoreoviridae	Orbivirus	dsRNA	"JX272476.1 \|Bluetongue virus 15 isolate 23/8/65 segment 8, complete sequence\|set:c9b0734d2e28f7659e(...TRUNCATED)	[[0.8660254,-0.5],[1.1405702516232121,-0.19112228666600992],[1.415122522953478,0.49617688041954777],(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)
"GTTAAAATGCAATGGTCGCAATCACCGTGCAAGGTGCACAGCTCATCAAGCGAGTGGTCGAACGCTTTTATCCAGGGATAGCATTTAATATAAATGAAG(...TRUNCATED)	3,944	KJ661729.1	KJ661729.1		Bluetongue virus 1	Bluetongue virus		Sedoreoviridae	Orbivirus	dsRNA	"KJ661729.1 \|Bluetongue virus 1 isolate SIC2013 segment 1, complete sequence\|set:1c8922bd1e284033191(...TRUNCATED)	[[0.8660254,-0.5],[1.8291586823131185,1.2288488101105508],[2.792625246755817,-0.3912548380193649],[3(...TRUNCATED)	[[[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0.0],[0(...TRUNCATED)

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