add outline for dataset card
#2
by
davanstrien
HF staff
- opened
README.md
CHANGED
@@ -35,4 +35,146 @@ language:
|
|
35 |
- en
|
36 |
tags:
|
37 |
- medical
|
38 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
35 |
- en
|
36 |
tags:
|
37 |
- medical
|
38 |
+
pretty_name: emrQA-msquad
|
39 |
+
---
|
40 |
+
|
41 |
+
# Dataset Card for emrQA-msquad
|
42 |
+
|
43 |
+
<!-- Provide a quick summary of the dataset. -->
|
44 |
+
|
45 |
+
This dataset card aims to be a base template for new datasets. It has been generated using [this raw template](https://github.com/huggingface/huggingface_hub/blob/main/src/huggingface_hub/templates/datasetcard_template.md?plain=1).
|
46 |
+
|
47 |
+
## Dataset Details
|
48 |
+
|
49 |
+
### Dataset Description
|
50 |
+
|
51 |
+
> Machine Reading Comprehension (MRC) holds a pivotal role in shaping Medical Question Answering Systems (QAS) and transforming the landscape of accessing and applying medical information. However, the inherent challenges in the medical field, such as complex terminology and question ambiguity, necessitate innovative solutions. One key solution involves integrating specialized medical datasets and creating dedicated datasets. This strategic approach enhances the accuracy of QAS, contributing to advancements in clinical decision-making and medical research. To address the intricacies of medical terminology, a specialized dataset was integrated, exemplified by a novel Span extraction dataset derived from emrQA but restructured into 163,695 questions and 4,136 manually obtained answers, this new dataset was called emrQA-msquad dataset. Additionally, for ambiguous questions, a dedicated medical dataset for the Span extraction task was introduced, reinforcing the system's robustness. The fine-tuning of models such as BERT, RoBERTa, and Tiny RoBERTa for medical contexts significantly improved response accuracy within the F1-score range of 0.75 to 1.00 from 10.1% to 37.4%, 18.7% to 44.7% and 16.0% to 46.8%, respectively.
|
52 |
+
|
53 |
+
|
54 |
+
|
55 |
+
- **Curated by:** [More Information Needed]
|
56 |
+
- **Funded by [optional]:** [More Information Needed]
|
57 |
+
- **Shared by [optional]:** [More Information Needed]
|
58 |
+
- **Language(s) (NLP):** [More Information Needed]
|
59 |
+
- **License:** [More Information Needed]
|
60 |
+
|
61 |
+
### Dataset Sources [optional]
|
62 |
+
|
63 |
+
<!-- Provide the basic links for the dataset. -->
|
64 |
+
|
65 |
+
- **Repository:** [More Information Needed]
|
66 |
+
- **Paper [optional]:** [More Information Needed]
|
67 |
+
- **Demo [optional]:** [More Information Needed]
|
68 |
+
|
69 |
+
## Uses
|
70 |
+
|
71 |
+
<!-- Address questions around how the dataset is intended to be used. -->
|
72 |
+
|
73 |
+
### Direct Use
|
74 |
+
|
75 |
+
<!-- This section describes suitable use cases for the dataset. -->
|
76 |
+
|
77 |
+
[More Information Needed]
|
78 |
+
|
79 |
+
### Out-of-Scope Use
|
80 |
+
|
81 |
+
<!-- This section addresses misuse, malicious use, and uses that the dataset will not work well for. -->
|
82 |
+
|
83 |
+
[More Information Needed]
|
84 |
+
|
85 |
+
## Dataset Structure
|
86 |
+
|
87 |
+
<!-- This section provides a description of the dataset fields, and additional information about the dataset structure such as criteria used to create the splits, relationships between data points, etc. -->
|
88 |
+
|
89 |
+
[More Information Needed]
|
90 |
+
|
91 |
+
## Dataset Creation
|
92 |
+
|
93 |
+
### Curation Rationale
|
94 |
+
|
95 |
+
<!-- Motivation for the creation of this dataset. -->
|
96 |
+
|
97 |
+
[More Information Needed]
|
98 |
+
|
99 |
+
### Source Data
|
100 |
+
|
101 |
+
<!-- This section describes the source data (e.g. news text and headlines, social media posts, translated sentences, ...). -->
|
102 |
+
|
103 |
+
#### Data Collection and Processing
|
104 |
+
|
105 |
+
<!-- This section describes the data collection and processing process such as data selection criteria, filtering and normalization methods, tools and libraries used, etc. -->
|
106 |
+
|
107 |
+
[More Information Needed]
|
108 |
+
|
109 |
+
#### Who are the source data producers?
|
110 |
+
|
111 |
+
<!-- This section describes the people or systems who originally created the data. It should also include self-reported demographic or identity information for the source data creators if this information is available. -->
|
112 |
+
|
113 |
+
[More Information Needed]
|
114 |
+
|
115 |
+
### Annotations [optional]
|
116 |
+
|
117 |
+
<!-- If the dataset contains annotations which are not part of the initial data collection, use this section to describe them. -->
|
118 |
+
|
119 |
+
#### Annotation process
|
120 |
+
|
121 |
+
<!-- This section describes the annotation process such as annotation tools used in the process, the amount of data annotated, annotation guidelines provided to the annotators, interannotator statistics, annotation validation, etc. -->
|
122 |
+
|
123 |
+
[More Information Needed]
|
124 |
+
|
125 |
+
#### Who are the annotators?
|
126 |
+
|
127 |
+
<!-- This section describes the people or systems who created the annotations. -->
|
128 |
+
|
129 |
+
[More Information Needed]
|
130 |
+
|
131 |
+
#### Personal and Sensitive Information
|
132 |
+
|
133 |
+
<!-- State whether the dataset contains data that might be considered personal, sensitive, or private (e.g., data that reveals addresses, uniquely identifiable names or aliases, racial or ethnic origins, sexual orientations, religious beliefs, political opinions, financial or health data, etc.). If efforts were made to anonymize the data, describe the anonymization process. -->
|
134 |
+
|
135 |
+
[More Information Needed]
|
136 |
+
|
137 |
+
## Bias, Risks, and Limitations
|
138 |
+
|
139 |
+
<!-- This section is meant to convey both technical and sociotechnical limitations. -->
|
140 |
+
|
141 |
+
[More Information Needed]
|
142 |
+
|
143 |
+
### Recommendations
|
144 |
+
|
145 |
+
<!-- This section is meant to convey recommendations with respect to the bias, risk, and technical limitations. -->
|
146 |
+
|
147 |
+
Users should be made aware of the risks, biases and limitations of the dataset. More information needed for further recommendations.
|
148 |
+
|
149 |
+
## Citation
|
150 |
+
|
151 |
+
**BibTeX:**
|
152 |
+
|
153 |
+
```
|
154 |
+
@misc{eladio2024emrqamsquad,
|
155 |
+
title={emrQA-msquad: A Medical Dataset Structured with the SQuAD V2.0 Framework, Enriched with emrQA Medical Information},
|
156 |
+
author={Jimenez Eladio and Hao Wu},
|
157 |
+
year={2024},
|
158 |
+
eprint={2404.12050},
|
159 |
+
archivePrefix={arXiv},
|
160 |
+
primaryClass={cs.CL}
|
161 |
+
}
|
162 |
+
```
|
163 |
+
|
164 |
+
## Glossary [optional]
|
165 |
+
|
166 |
+
<!-- If relevant, include terms and calculations in this section that can help readers understand the dataset or dataset card. -->
|
167 |
+
|
168 |
+
[More Information Needed]
|
169 |
+
|
170 |
+
## More Information [optional]
|
171 |
+
|
172 |
+
[More Information Needed]
|
173 |
+
|
174 |
+
## Dataset Card Authors [optional]
|
175 |
+
|
176 |
+
[More Information Needed]
|
177 |
+
|
178 |
+
## Dataset Card Contact
|
179 |
+
|
180 |
+
[More Information Needed]
|