This is a dataset describes transcript expression based on the data from GTEX ( file: GTEx_Analysis_2017-06-05_v8_RSEMv1.3.0_transcript_tpm.gct.gz )
It measures the transcription level of each human transcripts ( 4-5 per genes ) in every 31 tissues (for the V1, 50 more specific tissues for the V2).
expression values are log-transformed ( x -> log(x+1) )
Each sample of the dataset correspond to:
- A unique (gene_id, transcript_id) pair
- the quantified level of expressions across several tissues
- the DNA sequence
- the RNA sequence (ATCG format)
- the protein sequence
Splits Statistics
| train | test | evaluation | |
|---|---|---|---|
| # Genes | 17648 | 980 | 981 |
| # Transcript | 82205 | 4718 | 4318 |
NOTE
We currently only included coding genes, there there the RNA is actually mRNA