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PR_kwDODunzps5CD2BQ
5,192
Drop labels in Image and Audio folders if files are on different levels in directory or if there is only one label
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null
[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "> Nit: maybe we can use the count_path_segments function from this file for counting (updated with your logic to make it faster).\r\n\r\n@mariosasko just to make sure I understood you correctly - are you okay with this change? (actually `os.path.normpath` is redundant here as paths from `data_files` should be already normalized but just in case)\r\nhttps://github.com/huggingface/datasets/pull/5192/files#diff-1f09f7a178211f7539b1499b64b69793bd53b30c8b7b34cfcc5835e25d31929fR33\r\nIf you are, we can merge.", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5192). All of your documentation changes will be reflected on that endpoint.", "awesome ! :D" ]
2022-11-02T14:01:41
2022-11-15T16:32:53
2022-11-15T16:31:07
CONTRIBUTOR
null
Will close https://github.com/huggingface/datasets/issues/5153 Drop labels by default (`drop_labels=None`) when: * there are files on different levels of directory hierarchy by checking their path depth * all files are in the same directory (=only one label was inferred) First one fixes cases like this: ``` repo image3.jpg image4.jpg data image1.jpg image2.jpg ``` Second one fixes cases like this: ``` repo image1.jpg image2.jpg image3.jpg ``` This is mostly to fix the viewer for people who just drop images in the Hub interface into the root dir. I added tests for both of the cases on local and remote files. **I also changed data files for old test on drop_labels** (`test_generate_examples_drop_labels`). The files I provide to `test_generate_examples_drop_labels` now has "canonical" classification structure (two dirs) in order not to change the logic of the test (=not to check these two cases addressed in the PR).
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Make torch.Tensor and spacy models cacheable
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-11-02T13:56:18
2022-11-02T17:20:48
2022-11-02T17:18:42
CONTRIBUTOR
null
Override `Pickler.save` to implement deterministic reduction (lazily registered; inspired by https://github.com/uqfoundation/dill/blob/master/dill/_dill.py#L343) functions for `torch.Tensor` and spaCy models. Fix https://github.com/huggingface/datasets/issues/5170, fix https://github.com/huggingface/datasets/issues/3178
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`path` is `None` when downloading a custom audio dataset from the Hub
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[ "Hi! Yes, this is expected behavior - we do this as a security measure to not leak local paths (this info would be useless on other users' machines anyways) and only push audio bytes. \r\n" ]
2022-11-02T11:51:25
2022-11-02T12:55:02
2022-11-02T12:55:02
MEMBER
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### Describe the bug I've created an [audio dataset](https://huggingface.co/datasets/lewtun/audio-test-push) using the `audiofolder` feature desribed in the [docs](https://huggingface.co/docs/datasets/audio_dataset#audiofolder) and then pushed it to the Hub. Locally, I can see the `audio.path` feature is of the expected form `path/to/data_dir`, but when I download the dataset from the Hub, I see `audio.path` is `None` Here's an example: ```python from datasets import load_dataset ds = load_dataset("lewtun/audio-test-push") ds["train"][0] # { # "audio": { # "path": None, <-- Is this expected? # "array": array( # [ # 3.97140226e-07, # 7.30310290e-07, # 7.56406735e-07, # ..., # -1.19636677e-01, # -1.16811886e-01, # -1.12441722e-01, # ] # ), # "sampling_rate": 44100, # }, # "song_id": 0, # "genre_id": 0, # "genre": "Electronic", # } ``` Is this expected behaviour? If yes, feel free to close this issue as it's not a true bug then :) ### Steps to reproduce the bug 1. Create an audio dataset with the `audiofolder` feature 2. Push the dataset to the Hub with `push_to_hub()` 3. Download the Hub dataset and inspect the `audio.path` feature ### Expected behavior `audio.path` points to the file associated with the audio data ### Environment info - `datasets` version: 2.6.2.dev0 - Platform: macOS-10.16-x86_64-i386-64bit - Python version: 3.8.13 - PyArrow version: 9.0.0 - Pandas version: 1.5.1
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5,189
Reduce friction in tabular dataset workflow by eliminating having splits when dataset is loaded
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[ "I have to admit I'm not a fan of this idea, as this would result in a non-consistent behavior between tabular and non-tabular datasets, which is confusing if done without the context you provided. Instead, we could consider returning a `Dataset` object rather than `DatasetDict` if there is only one split in the generated dataset. But then again, I think this lib is a bit too old to make such changes. @lhoestq @albertvillanova WDYT?\r\n\r\n", "We can brainstorm here to see how we could make it happen ? And then depending on the options we see if it's a change we can do.\r\n\r\nI'm starting with a first reasoning\r\n\r\nCurrently not passing `split=` in `load_dataset` means \"return a dict with each split\".\r\n\r\nNow what would happen if a dataset has no split ? Ideally it should return one Dataset. And passing `split=` would have no sense. So depending on the dataset content, not passing `split=` should return a dict or a Dataset. In particular, those two cases should work:\r\n```python\r\n# case 1: dataset without split\r\nds = load_dataset(\"dataset_without_split\")\r\nds[0], ds[\"column_name\"], list(ds) # we want this\r\n\r\n# case 2: dataset with splits\r\nds = load_dataset(\"dataset_with_splits\")\r\nds[\"train\"] # this works and can't be changed\r\nds = load_dataset(\"dataset_with_splits\", split=\"train\")\r\nds[0], ds[\"column_name\"], list(ds) # this works and can't be changed\r\n```\r\n\r\nI can see several ideas:\r\n1. allowing `load_dataset` to return a different object based on the dataset content - either a Dataset or a DatasetDict\r\n - we can update `get_dataset_split_names` to return None or a list if users want to know in advance what object will be returned. They can also use `isinstance` _a posteriori_\r\n - but in this case we expect users to be careful when loading datasets and always to extra steps to check if they got a Dataset or DatasetDict\r\n2. merge Dataset and DatasetDict objects\r\n - they already share many functions: map, filter, push_to_hub etc.\r\n - we can define `ds[0]` to be the first item of the first split, and consider that the uses accesses rows from the full table of all the splits concatenated\r\n - however there is a collision when doing `ds[\"column_name\"]` or `ds[\"train\"]` that we need to address: the first returns a list, while the other returns a Dataset.\r\n\r\nWhat are your opinions on those two ideas ? Do you have other ideas in mind ?", "I like the first idea more (concatenating splits doesn't seem useful, no?). This is a significant breaking change, so I think we should do a poll (or something similar) to gather more info on the actual \"expected behavior\" and wait for Datasets 3.0 if we decide to implement it.\r\n\r\nPS: @thomwolf also suggested the same thing a while ago (https://github.com/huggingface/datasets/issues/743#issuecomment-746074641).", "I think it's an interesting improvement to the user experience for a case that comes often (no split) so I would definitively support it.\r\n\r\nI would be more in favor of option 2 rather than returning various types of objects from load_dataset and handling carefully the possible collisions indeed", "Related: if a dataset only has one split, we don't show the splits select control in the dataset viewer on the Hub, eg. compare https://huggingface.co/datasets/hf-internal-testing/fixtures_image_utils/viewer/image/test with https://huggingface.co/datasets/glue/viewer/mnli/test.\r\n\r\nSee https://github.com/huggingface/moon-landing/pull/3858 for more details (internal)", "I feel like the second idea is a bit more overkill. \r\n@severo I would say it's a bit irrelevant to the problem we have but is a separate problem @polinaeterna is solving at the moment. 😅 (also discussed on slack)", "OK, sorry for polluting the thread. The relation I saw with the dataset viewer is that from a UX point of view, we hide the concepts of split and configuration whenever possible -> this issue feels like doing the same in the datasets library.", "I would agree that returning different types based on the content of the dataset might be confusing.\r\n\r\nWe can do something similar to what `fetch_*` or `load_*` from `sklearn.datasets` do, which is to have an arg which changes the type of the returned type. For instance, `load_iris` would return a dict, but `load_iris(..., return_X_y=True)` would return a tuple.\r\n\r\nHere we can have a similar arg such as `return_X` which would then only return a single `DataSet` or an array.", "> I feel like the second idea is a bit more overkill.\r\n\r\nOverkill in what sense ?\r\n\r\n> Here we can have a similar arg such as return_X which would then only return a single DataSet or an array.\r\n\r\nRight now one can already pass `split=\"all\"` to get one `Dataset` object with all the data in it (unsplit). We could also have something like `return_all=True` so make the API clearer.\r\n\r\n> I would be more in favor of option 2 rather than returning various types of objects from load_dataset and handling carefully the possible collisions indeed\r\n\r\nI think it would be ok to handle the collision by allowing both `ds[\"train\"]` and `ds[\"column_name\"]` (and maybe adding something like `ds.splits` for those who want to iterate over the splits or add new ones)", "Would it make sense to remove the notion of \"split\" in `load_dataset`? I feel a lof of it comes from the want to have some sort of group of more or less similar dataset. \"train\"/\"test\"/\"validation\" are the traditional ones, but there are some datasets that have much more splits.\r\n\r\nWould it make sense to force `load_dataset` to only load a single `Dataset` object, and fail if it doesn't point to one. And have another method that's like `load_dataset_group_info` that can return a very arbitrary info class (Dict, List whatever), but you need to pass individual infos to `load_dataset` to run anything? Typically I don't think `DatasetDict.map` is really that helpful, but that's my personal opinion. This would help make things more readable (typically knowing if an object is a `Dataset` or a `DatasetDict`)", "> Would it make sense to remove the notion of \"split\" in load_dataset?\r\n\r\nI think we need to keep it - though in practice people can name the splits whatever they want anyway.\r\n\r\n> Would it make sense to force load_dataset to only load a single Dataset object, and fail if it doesn't point to one.\r\n\r\nWe need to keep backward compatibility ideally - in particular the load_dataset + ds[\"train\"] one", "> I think we need to keep it - though in practice people can name the splits whatever they want anyway.\r\n\r\nIt was my understanding that the whole issue was that `load_dataset` returned multiple types of objects.\r\n\r\n> We need to keep backward compatibility ideally - in particular the load_dataset + ds[\"train\"] one\r\n\r\nYeah sorry I meant ideally. One can always start developing `load_dataset_v2` can deprecate the first one and remove it in the longer term.", "> It was my understanding that the whole issue was that load_dataset returned multiple types of objects.\r\n\r\nYes indeed, but we still want to keep a way to load the train/val/test/whatever splits alone ;)", "@thomasw21's solution is good but it will break backwards compatibility. 😅", "Started to experiment with merging Dataset and DatasetDict. My plan is to define the splits of a Dataset in Dataset.info.splits (already exists, but never used). A Dataset would then be the concatenation of its splits if they exist.\r\n\r\nNot sure yet this is the way to go. My plan is to play with it and see and share it with you, so we can see if it makes sense from a UX point of view.", "So just to make sure that I understand the current direction, people will have to be extra careful when handling splits right?\r\nImagine \"potato\" a dataset containing train/validation split:\r\n```\r\nload_dataset(\"potato\") # returns the concatenation of all the splits\r\n```\r\nPreviously the design would force you to choose a split (it would raise otherwise), or manually concat them if you really wanted to play with concatenated splits. Now it would potentially run without raising for a bit of time until you figure out that you've been training on both train and validation split.\r\n\r\nWould it make sense to use a dataset specific default instead of using the concatenation, typically \"potato\" dataset's default would be train?\r\n```\r\nload_dataset(\"potato\") # returns \"train\" split\r\nload_dataset(\"potato\", split=\"train\") # returns \"train\" split\r\nload_dataset(\"potato\", split=\"validation\") # returns \"validation\" split\r\nconcatenate_datasets([load_dataset(\"potato\", split=\"train\"), load_dataset(\"potato\", split=\"validation\")]) # returns concatenation\r\n```", "> load_dataset(\"potato\") # returns \"train\" split\r\n\r\nTo avoid a breaking change we need to be able to do `load_dataset(\"potato\")[\"validation\"]` as well.\r\n\r\nIn that case I'd wonder where the validation split comes from, since the rows of the dataset wouldn't contain the validation split according to your example. That's why I'm more in favor of concatenating.\r\n\r\nA dataset is one table, that optionally has some split info about subsets (e.g. for training an evaluation)\r\n\r\nThis also allows anyone to re-split the dataset the way they want if they're not happy with the default:\r\n\r\n```python\r\nds = load_dataset(\"potato\").train_test_split(test_size=0.2)\r\ntrain_ds = ds[\"train\"]\r\ntest_ds = ds[\"test\"]\r\n```", "Just thinking about this, we could just have `to_dataframe()` as `load_dataset(\"blah\").to_dataframe()` to get the whole dataset, and not change anything else.", "I have a first implementation of option 2 (merging Dataset and DatasetDict) in this PR: https://github.com/huggingface/datasets/pull/5301/\r\n\r\nFeel free to play with it if you're interested, and let me know what you think. In this PR, a dataset is one table that optionally has some split info about subsets.", "@adrinjalali we already have [to_pandas](https://huggingface.co/docs/datasets/package_reference/main_classes#datasets.Dataset.to_pandas) AFAIK that essentially does the same thing (for a dataset, not for a dataset dict), I was wondering if it makes sense to have this as I don't know portion of people who load non-tabular datasets into dataframes. @lhoestq I saw your PR and it will break a lot of things imo, WDYT of this option? ", "> we already have [to_pandas](https://huggingface.co/docs/datasets/package_reference/main_classes#datasets.Dataset.to_pandas) AFAIK that essentially does the same thing (for a dataset, not for a dataset dict)\r\n\r\nyes correct :)\r\n\r\n> I saw your PR and it will break a lot of things imo\r\n\r\nDo you have concrete examples you can share ?\r\n\r\n> WDYT of this option?\r\n\r\nThe to_dataframe option ? I think it not enough, since you'd still get a `DatasetDict({\"train\": Dataset()})` if you load a dataset with no splits (e.g. one CSV), and this doesn't really make sense.\r\n\r\nNote that in the PR I opened you can do\r\n```python\r\nds = load_dataset(\"dataset_with_just_one_csv\") # Dataset type\r\ndf = load_dataset(\"dataset_with_just_one_csv\").to_pandas() # DataFrame type\r\n```", "@lhoestq no I think @adrinjalali and I meant when user calls `to_dataframe` if there's only train split in `DatasetDict` we could directly load that into dataframe. This might cause a confusion given there's to_pandas but I think it's more intuitive and least breaking change. (given people -who use `datasets` for tabular workflows- will eventually call `to_pandas` anyway) ", "So in that case it would be fine to still end up with a dataset dict with a \"train\" split ?", "yeah what I mean is this:\r\n\r\n```py\r\ndataset = load_dataset(\"blah\")\r\n\r\n# deal with a split of the dataset\r\ntrain = dataset[\"train\"]\r\ntrain_df = dataset[\"train\"].to_dataframe()\r\n\r\n# deal with the whole dataset\r\ndataset_df = dataset.to_dataframe()\r\n```\r\n\r\nSo we do two things to improve tabular experience:\r\n- allow datasets to have a single split\r\n- add `to_dataframe` to the root dict level so that users can simply call `df = load_dataset(\"blah\").to_dataframe()` and have it in their `pandas.DataFrame` object.", "Ok ! Note that we already have `Dataset.to_pandas()` so for consistency I'd call it `DatasetDict.to_pandas()` as well, does it sound good to you ? This is something we can add pretty easily", "yeah that sounds perfect @lhoestq !", "> So just to make sure that I understand the current direction, people will have to be extra careful when handling splits right?\r\n\r\nWe can raise an error if someone does `load_dataset(...)[0]` if the dataset is made of several splits, and return the first example if there's one or zero splits (i.e. when it's not ambiguous). Had this idea from the dicussions in #5312 WDYT @thomasw21 ?", "> We can raise an error if someone does load_dataset(...)[0] if the dataset is made of several splits,\r\n\r\nBut then how is that different to have the distinction between DatasetDict and Dataset then? Is it just that \"default behaviour when there are no splits or single split, it returns directly the split when there's no ambiguity\".\r\n\r\nAlso I was wondering how the concatenation could have heavy impacts when running mapping functions/filtering in batch? Typically can batch be somehow mixed?", "> But then how is that different to have the distinction between DatasetDict and Dataset then?\r\n\r\nBecause it doesn't make sense to be able to do `example = ds[0]` or `examples = list(ds)` on a class named `DatasetDict` of type `Dict[str, Dataset]`.\r\n\r\n> Also I was wondering how the concatenation could have heavy impacts when running mapping functions/filtering in batch? Typically can batch be somehow mixed?\r\n\r\nNo, we run each function on each split separated", "> Because it doesn't make sense to be able to do example = ds[0] or examples = list(ds) on a class named DatasetDict of type Dict[str, Dataset].\r\n\r\nHum but you're still going to raise an exception in both those cases with your current change no? (actually list(ds) would return the name of the splits no?)\r\n\r\n> No, we run each function on each split separated\r\n\r\nNice!" ]
2022-11-02T09:15:02
2022-12-06T12:13:17
null
CONTRIBUTOR
null
### Feature request Sorry for cryptic name but I'd like to explain using code itself. When I want to load a specific dataset from a repository (for instance, this: https://huggingface.co/datasets/inria-soda/tabular-benchmark) ```python from datasets import load_dataset dataset = load_dataset("inria-soda/tabular-benchmark", data_files=["reg_cat/house_sales.csv"], streaming=True) print(next(iter(dataset["train"]))) ``` `datasets` library is essentially designed for people who'd like to use benchmark datasets on various modalities to fine-tune their models, and these benchmark datasets usually have pre-defined train and test splits. However, for tabular workflows, having train and test splits usually ends up model overfitting to validation split so usually the users would like to do validation techniques like `StratifiedKFoldCrossValidation` or when they tune for hyperparameters they do `GridSearchCrossValidation` so often the behavior is to create their own splits. Even [in this paper](https://hal.archives-ouvertes.fr/hal-03723551) a benchmark is introduced but the split is done by authors. It's a bit confusing for average tabular user to try and load a dataset and see `"train"` so it would be nice if we would not load dataset into a split called `train `by default. ```diff from datasets import load_dataset dataset = load_dataset("inria-soda/tabular-benchmark", data_files=["reg_cat/house_sales.csv"], streaming=True) -print(next(iter(dataset["train"]))) +print(next(iter(dataset))) ``` ### Motivation I explained it above 😅 ### Your contribution I think this is quite a big change that seems small (e.g. how to determine datasets that will not be load to train split?), it's best if we discuss first!
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1,432,477,139
PR_kwDODunzps5CBaoQ
5,188
add: segmentation guide.
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null
[ "_The documentation is not available anymore as the PR was closed or merged._", "Thanks @osanseviero. Am I good to merge? ", "I would wait for a second approval just in case :) ", "Sure :) ", "Merging since the images have been pushed as LFS files ([PR](https://huggingface.co/datasets/huggingface/documentation-images/discussions/8)). " ]
2022-11-02T04:34:36
2022-11-04T18:25:57
2022-11-04T18:23:34
MEMBER
null
Closes #5181 I have opened a PR on Hub (https://huggingface.co/datasets/huggingface/documentation-images/discussions/5) to include the images in our central Hub repository. Once the PR is merged I will edit the image links. I have also prepared a [Colab Notebook](https://colab.research.google.com/drive/1BMDCfOTBnyshoME5RSxn5iQy-TWeFbOA?usp=sharing) in case anyone wants to play. - [x] Replace the image links
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5,187
chore: add notebook links to img cls and obj det.
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null
[ "_The documentation is not available anymore as the PR was closed or merged._", "@nateraw I guess the failing test is unrelated. ", "@sayakpaul Yea failures are unrelated. ", "Alright. Will wait for @osanseviero's take and then merge. ", "FYI @stevhliu ", "@osanseviero @stevhliu @nateraw thank you for your comments. Acted on them.", "Thanks! Can I merge? Or should we wait for approvals from the others?", "Since @stevhliu approved as well, I think you're good to go", "Alright!\r\n\r\nMerging as a Member for the first time 🫀" ]
2022-11-02T02:30:09
2022-11-03T01:52:24
2022-11-03T01:49:56
MEMBER
null
Closes https://github.com/huggingface/datasets/issues/5182
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I_kwDODunzps5VW0XT
5,186
Incorrect error message when Dataset.from_sql fails and sqlalchemy not installed
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[ "Hi! The first `Dataset.from_sql` call also outputs the \"ImportError: Using URI string without sqlalchemy installed.\" message, but you also get \"During handling of the above exception another exception occurred: ...\" after which the ValueError is printed. I agree that this behavior makes it easy to miss the original error. \r\n\r\nI think we can improve this by not throwing the writer's ValueError if the error from a dataset script is already being handled to make debugging easier. @lhoestq @albertvillanova wdyt?", "Yup ! Alternatively the error can be raised in sql.py before generating the examples ? In `_info` for example", "yea @lhoestq that would probably be good. The 2nd error is useless if the 1st error is the real reason it failed. " ]
2022-11-01T20:25:51
2022-11-15T18:24:39
2022-11-15T18:24:39
CONTRIBUTOR
null
### Describe the bug When calling `Dataset.from_sql` (in my case, with sqlite3), it fails with a message ```ValueError: Please pass `features` or at least one example when writing data``` when I don't have `sqlalchemy` installed. ### Steps to reproduce the bug Make a new sqlite db with `sqlite3` and `pandas` from a remote [URL](https://raw.githubusercontent.com/nytimes/covid-19-data/master/us-states.csv). ```python import sqlite3 import pandas as pd from datasets import Dataset conn = sqlite3.connect('us_covid_data.db') df = pd.read_csv('https://raw.githubusercontent.com/nytimes/covid-19-data/master/us-states.csv') df.to_sql('states', conn, if_exists='replace') ``` Then if you try to query this DB like this: ```python ds = Dataset.from_sql('''SELECT * from states WHERE state=="New York";''', "sqlite:///us_covid_data.db") ``` You run into the error I described above: ```ValueError: Please pass `features` or at least one example when writing data``` However, if you try to pass features, as the error suggests, then you get an error that tells you the underlying problem... ```python from datasets import Dataset, Features, Value features = Features({ 'date': Value('date32'), 'label': Value('string'), 'fips': Value('int32'), 'cases': Value('int32'), 'deaths': Value('int32') }) ds = Dataset.from_sql( '''SELECT * from states WHERE state=="New York";''', "sqlite:///us_covid_data.db", features=features ) ``` Which results in the actual underlying error: `ImportError: Using URI string without sqlalchemy installed.` ### Expected behavior Instead of `ValueError` about needing to pass features, we should provide the actual underlying error about not having SQLAlchemy installed when it isn't found in the environment. ### Environment info - `datasets` version: 2.6.1 - Platform: macOS-10.16-x86_64-i386-64bit - Python version: 3.8.10 - PyArrow version: 10.0.0 - Pandas version: 1.2.5
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1,432,021,611
I_kwDODunzps5VWupr
5,185
Allow passing a subset of output features to Dataset.map
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2022-11-01T20:07:20
2022-11-01T20:07:34
null
CONTRIBUTOR
null
### Feature request Currently, map does one of two things to the features (if I'm not mistaken): * when you do not pass features, types are assumed to be equal to the input if they can be cast, and inferred otherwise * when you pass a full specification of features, output features are set to this However, sometimes you want to just pass some of the output types, particularly when the first of these modes makes an incorrect type. This currently crashes. ### Motivation To give a little background: this problem appears in converting labels to ids, where the labels happen to be floats rather than strings Consider the following use of map to convert from float to int ```python data = Dataset.from_dict({'y':[1.0,2.0,3.0]}) mapped = data.map(lambda r: {'y': int(r['y'])}) mapped['y'] # is floats, not ints ``` The result is a float again, since after the mapping operation it forces the old datatypes back on the data. Passing `features=Features({"y": Value(dtype="int64")})` to map works in principle, but then extending it a little to e.g. ```python def format_data(r): return {**tokenizer(r["text"]), "y": int(r["y"])} data = Dataset.from_dict({"y": [1.0, 2.0, 3.0], "text": ["one", "two", "three"]}) mapped = data.map( format_data, features=Features({'y': Value(dtype="int64")}), remove_columns=["text"], ) ``` Results in a crash in dataset internals, as it expects either all or no output features to be specified. Of course one can pass a full feature specification, but this becomes tokenizer specific and very awkward. ### Your contribution I've looked at `write_batch` and particularly `col_type = features[col] if features else None`, but checking for `col in features` here makes it fail elsewhere, but the structure makes it hard to understand how and why. I do not think I would have the time myself to get to the bottom of this anytime soon.
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1,431,418,066
I_kwDODunzps5VUbTS
5,183
Loading an external dataset in a format similar to conll2003
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2022-11-01T13:18:29
2022-11-02T11:57:50
2022-11-02T11:57:50
NONE
null
I'm trying to load a custom dataset in a Dataset object, it's similar to conll2003 but with 2 columns only (word entity), I used the following script: features = datasets.Features( {"tokens": datasets.Sequence(datasets.Value("string")), "ner_tags": datasets.Sequence( datasets.features.ClassLabel( names=["B-PER", .... etc.]))} ) from datasets import Dataset INPUT_COLUMNS = "tokens ner_tags".split(" ") def read_conll(file): #all_labels = [] example = {col: [] for col in INPUT_COLUMNS} idx = 0 with open(file) as f: for line in f: if line: if line.startswith("-DOCSTART-") and example["tokens"] != []: print(idx, example) yield idx, example idx += 1 example = {col: [] for col in INPUT_COLUMNS} elif line == "\n" or (line.startswith("-DOCSTART-") and example["tokens"] == []): continue else: row_cols = line.split(" ") for i, col in enumerate(example): example[col] = row_cols[i].rstrip() dset = Dataset.from_generator(read_conll, gen_kwargs={"file": "/content/new_train.txt"}, features = features) The following error happened: [/usr/local/lib/python3.7/dist-packages/datasets/utils/py_utils.py](https://localhost:8080/#) in <genexpr>(.0) 285 for key in unique_values(itertools.chain(*dicts)): # set merge all keys 286 # Will raise KeyError if the dict don't have the same keys --> 287 yield key, tuple(d[key] for d in dicts) 288 TypeError: tuple indices must be integers or slices, not str What does this mean and what should I modify?
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1,431,029,547
I_kwDODunzps5VS8cr
5,182
Add notebook / other resource links to the task-specific data loading guides
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null
[ "Yea this would be great! We would need an object detection tutorial notebook too if it doesn't already exist there. ", "There is one: https://huggingface.co/docs/datasets/object_detection.\r\n\r\nI will start the work. " ]
2022-11-01T07:57:26
2022-11-03T01:49:57
2022-11-03T01:49:57
MEMBER
null
Does it make sense to include links to notebooks / scripts that show how to use a dataset for training / fine-tuning a model? For example, here in [https://huggingface.co/docs/datasets/image_classification] we could include a mention of https://github.com/huggingface/notebooks/blob/main/examples/image_classification.ipynb. Applies to https://huggingface.co/docs/datasets/object_detection as well. Cc: @osanseviero @nateraw
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5,181
Add a guide for semantic segmentation
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null
[ "Sure this sounds great! Would this be pure torchvision, albumentations, or something else?", "I am considering `torchvision` and `albumentations`. Also [works with TensorFlow](https://github.com/deep-diver/segformer-tf-transformers/blob/main/notebooks/TFSegFormer_Finetune.ipynb). \r\n\r\nI am assigning the issue to myself then. " ]
2022-11-01T07:54:50
2022-11-04T18:23:36
2022-11-04T18:23:36
MEMBER
null
Currently, we have these guides for object detection and image classification: * https://huggingface.co/docs/datasets/object_detection * https://huggingface.co/docs/datasets/image_classification I am proposing adding a similar guide for semantic segmentation. I am happy to contribute a PR for it. Cc: @osanseviero @nateraw
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5,180
An example or recommendations for creating large image datasets?
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[ "The beam utilities allow to prepare a dataset as parquet in your cloud storage. From my perspective this CLI is not super easy to use, but we've been working on a new python API to prepare a dataset in your cloud storage:\r\n```python\r\nfrom datasets import load_dataset_builder\r\n\r\nbuilder = load_dataset_builder(\"c4\", \"en\")\r\nbuilder.download_and_prepapre(\"s3://my-bucket/c4\", file_format=\"parquet\")\r\n```\r\n\r\nAnd to use Beam you can do:\r\n```python\r\nbeam_runner = ... # one of \"SparkRunner\", \"DataFlowRunner\", \"DirectRunner\", etc.\r\nbeam_options = ...\r\n\r\nbuilder.download_and_prepapre(\r\n \"s3://my-bucket/c4\",\r\n file_format=\"parquet\",\r\n beam_runner=beam_runner,\r\n beam_options=beam_options\r\n)\r\n```\r\n\r\nThough Beam can be used ONLY if there is a dataset script based on the `BeamBasedBuilder` right now - it doesn't work on an arbitrary dataset (see [wikipedia.py](https://huggingface.co/datasets/wikipedia/blob/main/wikipedia.py) for example).", "Thanks! \r\n\r\nWould be nice to have something similar for creating large image datasets. " ]
2022-11-01T07:38:38
2022-11-02T10:17:11
null
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I know that Apache Beam and `datasets` have [some connector utilities](https://huggingface.co/docs/datasets/beam). But it's a little unclear what we mean by "But if you want to run your own Beam pipeline with Dataflow, here is how:". What does that pipeline do? As a user, I was wondering if we have this support for creating large image datasets. If so, we should mention that [here](https://huggingface.co/docs/datasets/image_dataset). Cc @lhoestq
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5,179
`map()` fails midway due to format incompatibility
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[ "Cc: @lhoestq ", "You can end up with a list instead of a tensor if all the tensors inside the list can't be stacked together - can you make sure all your inputs are tensors with the same shape ?", "Is there an easy way to ensure it?", "You can make sure your `tokenize` function always return tensors of the same shape", "I modified my `tokenize()` function to be like so:\r\n\r\n```py\r\ndef tokenize(batch):\r\n return tokenizer(batch[\"text\"], padding=\"longest\")\r\n```\r\n\r\nso that the padding always happens w.r.t to the length of the longest sequence in a batch. The issue still persists. Is there any other way? ", "tbh I though your first implementation was fine\r\n```python\r\ndef tokenize(batch):\r\n return tokenizer(batch[\"text\"], padding=True, truncation=True)\r\n```\r\n\r\nMaybe you can try to see what the erroring data looks like by adding a try/except in `get_test_accuracy` ?", "This is what I got. \r\n\r\nFor the non-erroring data, it looks like (without the labels):\r\n\r\n```\r\ntensor([[ 101, 10047, 3110, ..., 0, 0, 0],\r\n [ 101, 1045, 2514, ..., 0, 0, 0],\r\n [ 101, 1045, 2514, ..., 0, 0, 0],\r\n ...,\r\n [ 101, 1045, 2005, ..., 0, 0, 0],\r\n [ 101, 1045, 2572, ..., 0, 0, 0],\r\n [ 101, 10047, 7481, ..., 0, 0, 0]]) 128\r\ntensor([[1, 1, 1, ..., 0, 0, 0],\r\n [1, 1, 1, ..., 0, 0, 0],\r\n [1, 1, 1, ..., 0, 0, 0],\r\n ...,\r\n [1, 1, 1, ..., 0, 0, 0],\r\n [1, 1, 1, ..., 0, 0, 0],\r\n [1, 1, 1, ..., 0, 0, 0]]) 128\r\n```\r\n\r\nFor the erroring part:\r\n\r\n```\r\n[tensor([ 101, 1045, 2064, 2102, 2393, 3110, 2066, 2242, 6355, 3047, 2004, 2574,\r\n 2004, 1996, 8629, 2357, 2125, 4299, 1045, 2071, 2424, 2009, 2006, 7858,\r\n 102, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0]), tensor([ 101, 10047, 5458, 1997, 3110, 11654, 1998, 11055, 102, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0]), tensor([ 101, 1045, 2074, 2064, 2102, 6073, 1996, 3110, 2008, 2026,\r\n 14982, 2000, 5587, 2203, 16650, 29563, 2030, 2569, 4506, 2052,\r\n 2191, 1037, 2738, 11552, 2208, 17044, 14540, 2100, 3375, 102,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0]),\r\n...\r\n\r\n[tensor([1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1,\r\n 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]), tensor([1, 1, 1, 1, 1, 1, 1, 1, 1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,\r\n 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]),\r\n...\r\n```\r\n\r\nI also tried investigating the shapes of the individual entries within a `batch` without the labels:\r\n\r\n```py\r\ndef get_test_accuracy(model):\r\n def fn(batch): \r\n try:\r\n inputs = {k:v.to(device) for k,v in batch.items() \r\n if k in tokenizer.model_input_names}\r\n with torch.no_grad():\r\n output = model(**inputs)\r\n pred_label = torch.argmax(output.logits, axis=-1)\r\n return {\"predicted_label\": pred_label.cpu().numpy()}\r\n except:\r\n for k in batch:\r\n if k != \"label\":\r\n for i in range(len(batch[k])):\r\n print(batch[k][i].shape)\r\n return fn\r\n```\r\n\r\nThey are:\r\n\r\n```\r\n...\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([66])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\ntorch.Size([69])\r\n```\r\n\r\nThere are differing shapes. I understand if I set `batch_size=None` in `emotions_encoded = emotions.map(tokenize, batched=True)` the problem should be fixed as the whole dataset would be treated as a single batch. But is there a way to do that in batches? ", "If you use the same batch_size for your two maps, you should get the exact same batches - therefore all containing the same shapes", "Oh I see. Thanks. Closing this issue. " ]
2022-11-01T03:57:59
2022-11-08T11:35:26
2022-11-08T11:35:26
MEMBER
null
### Describe the bug I am using the `emotion` dataset from Hub for sequence classification. After training the model, I am using it to generate predictions for all the entries present in the `validation` split of the dataset. ```py def get_test_accuracy(model): def fn(batch): inputs = {k:v.to(device) for k,v in batch.items() if k in tokenizer.model_input_names} with torch.no_grad(): output = model(**inputs) pred_label = torch.argmax(output.logits, axis=-1) return {"predicted_label": pred_label.cpu().numpy()} return fn ``` This is how the `get_test_accuracy()` is being used: ```py emotions = load_dataset("emotion") def tokenize(batch): return tokenizer(batch["text"], padding=True, truncation=True) emotions_encoded = emotions.map(tokenize, batched=True) emotions_encoded.set_format("torch", columns=["input_ids", "attention_mask", "label"]) new_dataset = emotions_encoded["validation"].map( accuracy_fn, batched=True, batch_size=128 ) ``` Complete code is available in the Colab Notebook provided below. The `map()` process fails midway giving: ```shell AttributeError Traceback (most recent call last) <ipython-input-8-ad24ac288eb4> in <module> 2 3 new_dataset = emotions_encoded["validation"].map( ----> 4 accuracy_fn, batched=True, batch_size=128 5 ) 7 frames /usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in map(self, function, with_indices, with_rank, input_columns, batched, batch_size, drop_last_batch, remove_columns, keep_in_memory, load_from_cache_file, cache_file_name, writer_batch_size, features, disable_nullable, fn_kwargs, num_proc, suffix_template, new_fingerprint, desc) 2588 new_fingerprint=new_fingerprint, 2589 disable_tqdm=disable_tqdm, -> 2590 desc=desc, 2591 ) 2592 else: /usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in wrapper(*args, **kwargs) 582 self: "Dataset" = kwargs.pop("self") 583 # apply actual function --> 584 out: Union["Dataset", "DatasetDict"] = func(self, *args, **kwargs) 585 datasets: List["Dataset"] = list(out.values()) if isinstance(out, dict) else [out] 586 for dataset in datasets: /usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in wrapper(*args, **kwargs) 549 } 550 # apply actual function --> 551 out: Union["Dataset", "DatasetDict"] = func(self, *args, **kwargs) 552 datasets: List["Dataset"] = list(out.values()) if isinstance(out, dict) else [out] 553 # re-apply format to the output /usr/local/lib/python3.7/dist-packages/datasets/fingerprint.py in wrapper(*args, **kwargs) 478 # Call actual function 479 --> 480 out = func(self, *args, **kwargs) 481 482 # Update fingerprint of in-place transforms + update in-place history of transforms /usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in _map_single(self, function, with_indices, with_rank, input_columns, batched, batch_size, drop_last_batch, remove_columns, keep_in_memory, load_from_cache_file, cache_file_name, writer_batch_size, features, disable_nullable, fn_kwargs, new_fingerprint, rank, offset, disable_tqdm, desc, cache_only) 2970 indices, 2971 check_same_num_examples=len(input_dataset.list_indexes()) > 0, -> 2972 offset=offset, 2973 ) 2974 except NumExamplesMismatchError: /usr/local/lib/python3.7/dist-packages/datasets/arrow_dataset.py in apply_function_on_filtered_inputs(inputs, indices, check_same_num_examples, offset) 2850 if with_rank: 2851 additional_args += (rank,) -> 2852 processed_inputs = function(*fn_args, *additional_args, **fn_kwargs) 2853 if update_data is None: 2854 # Check if the function returns updated examples <ipython-input-6-4e0d280426f6> in fn(batch) 1 def get_test_accuracy(model): 2 def fn(batch): ----> 3 inputs = {k:v.to(device) for k,v in batch.items() 4 if k in tokenizer.model_input_names} 5 with torch.no_grad(): <ipython-input-6-4e0d280426f6> in <dictcomp>(.0) 2 def fn(batch): 3 inputs = {k:v.to(device) for k,v in batch.items() ----> 4 if k in tokenizer.model_input_names} 5 with torch.no_grad(): 6 output = model(**inputs) AttributeError: 'list' object has no attribute 'to' ``` As you'd notice in the notebook, the process fails _midway_ and not at the beginning. Is this expected? ### Steps to reproduce the bug Colab Notebook: https://colab.research.google.com/gist/sayakpaul/d1570d537faf39040d02d77b1ed7de07/scratchpad.ipynb ### Expected behavior The mapping process should complete as is. If you switch the `split` to `test` it works as expected. ### Environment info Colab
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Unable to download the Chinese `wikipedia`, the dumpstatus.json not found!
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null
[ "In the dumps page of the wiki (https://dumps.wikimedia.org/zhwiki/), I found the following dumps:\r\n```\r\nIndex of /zhwiki/\r\n[../](https://dumps.wikimedia.org/)\r\n[20220701/](https://dumps.wikimedia.org/zhwiki/20220701/) 21-Aug-2022 01:48 -\r\n[20220720/](https://dumps.wikimedia.org/zhwiki/20220720/) 02-Sep-2022 01:48 -\r\n[20220801/](https://dumps.wikimedia.org/zhwiki/20220801/) 21-Sep-2022 01:44 -\r\n[20220820/](https://dumps.wikimedia.org/zhwiki/20220820/) 01-Oct-2022 09:39 -\r\n[20220901/](https://dumps.wikimedia.org/zhwiki/20220901/) 20-Oct-2022 09:44 -\r\n[20220920/](https://dumps.wikimedia.org/zhwiki/20220920/) 23-Sep-2022 12:06 -\r\n[20221001/](https://dumps.wikimedia.org/zhwiki/20221001/) 04-Oct-2022 15:10 -\r\n[20221020/](https://dumps.wikimedia.org/zhwiki/20221020/) 01-Nov-2022 03:15 -\r\n[latest/](https://dumps.wikimedia.org/zhwiki/latest/) 01-Nov-2022 03:15 -\r\n```\r\n\r\nMaybe the older dumps are not available which caused the downloading failure? \r\n\r\nHowever, when I changed to the newer version:\r\n```\r\ndata = load_dataset('wikipedia', '20220701.zh', beam_runner='DirectRunner')\r\n```\r\n\r\nit shows:\r\n```\r\nValueError: BuilderConfig 20220701.zh not found. Available: ['20220301.aa', '20220301.ab', '20220301.ace', '20220301.ady', '20220301.af', '20220301.ak', '20220301.als', '20220301.am', '20220301.an', '20220301.ang', '20220301.ar', '20220301.arc', '20220301.arz', '20220301.as', '20220301.ast', '20220301.atj', '20220301.av', '20220301.ay', '20220301.az', '20220301.azb', '20220301.ba', '20220301.bar', '20220301.bat-smg', '20220301.bcl', '20220301.be', '20220301.be-x-old', '20220301.bg', '20220301.bh', '20220301.bi', '20220301.bjn', '20220301.bm', '20220301.bn', '20220301.bo', '20220301.bpy', '20220301.br', '20220301.bs', '20220301.bug', '20220301.bxr', '20220301.ca', '20220301.cbk-zam', '20220301.cdo', '20220301.ce', '20220301.ceb', '20220301.ch', '20220301.cho', '20220301.chr', '20220301.chy', '20220301.ckb', '20220301.co', '20220301.cr', '20220301.crh', '20220301.cs', '20220301.csb', '20220301.cu', '20220301.cv', '20220301.cy', '20220301.da', '20220301.de', '20220301.din', '20220301.diq', '20220301.dsb', '20220301.dty', '20220301.dv', '20220301.dz', '20220301.ee', '20220301.el', '20220301.eml', '20220301.en', '20220301.eo', '20220301.es', '20220301.et', '20220301.eu', '20220301.ext', '20220301.fa', '20220301.ff', '20220301.fi', '20220301.fiu-vro', '20220301.fj', '20220301.fo', '20220301.fr', '20220301.frp', '20220301.frr', '20220301.fur', '20220301.fy', '20220301.ga', '20220301.gag', '20220301.gan', '20220301.gd', '20220301.gl', '20220301.glk', '20220301.gn', '20220301.gom', '20220301.gor', '20220301.got', '20220301.gu', '20220301.gv', '20220301.ha', '20220301.hak', '20220301.haw', '20220301.he', '20220301.hi', '20220301.hif', '20220301.ho', '20220301.hr', '20220301.hsb', '20220301.ht', '20220301.hu', '20220301.hy', '20220301.ia', '20220301.id', '20220301.ie', '20220301.ig', '20220301.ii', '20220301.ik', '20220301.ilo', '20220301.inh', '20220301.io', '20220301.is', '20220301.it', '20220301.iu', '20220301.ja', '20220301.jam', '20220301.jbo', '20220301.jv', '20220301.ka', '20220301.kaa', '20220301.kab', '20220301.kbd', '20220301.kbp', '20220301.kg', '20220301.ki', '20220301.kj', '20220301.kk', '20220301.kl', '20220301.km', '20220301.kn', '20220301.ko', '20220301.koi', '20220301.krc', '20220301.ks', '20220301.ksh', '20220301.ku', '20220301.kv', '20220301.kw', '20220301.ky', '20220301.la', '20220301.lad', '20220301.lb', '20220301.lbe', '20220301.lez', '20220301.lfn', '20220301.lg', '20220301.li', '20220301.lij', '20220301.lmo', '20220301.ln', '20220301.lo', '20220301.lrc', '20220301.lt', '20220301.ltg', '20220301.lv', '20220301.mai', '20220301.map-bms', '20220301.mdf', '20220301.mg', '20220301.mh', '20220301.mhr', '20220301.mi', '20220301.min', '20220301.mk', '20220301.ml', '20220301.mn', '20220301.mr', '20220301.mrj', '20220301.ms', '20220301.mt', '20220301.mus', '20220301.mwl', '20220301.my', '20220301.myv', '20220301.mzn', '20220301.na', '20220301.nah', '20220301.nap', '20220301.nds', '20220301.nds-nl', '20220301.ne', '20220301.new', '20220301.ng', '20220301.nl', '20220301.nn', '20220301.no', '20220301.nov', '20220301.nrm', '20220301.nso', '20220301.nv', '20220301.ny', '20220301.oc', '20220301.olo', '20220301.om', '20220301.or', '20220301.os', '20220301.pa', '20220301.pag', '20220301.pam', '20220301.pap', '20220301.pcd', '20220301.pdc', '20220301.pfl', '20220301.pi', '20220301.pih', '20220301.pl', '20220301.pms', '20220301.pnb', '20220301.pnt', '20220301.ps', '20220301.pt', '20220301.qu', '20220301.rm', '20220301.rmy', '20220301.rn', '20220301.ro', '20220301.roa-rup', '20220301.roa-tara', '20220301.ru', '20220301.rue', '20220301.rw', '20220301.sa', '20220301.sah', '20220301.sat', '20220301.sc', '20220301.scn', '20220301.sco', '20220301.sd', '20220301.se', '20220301.sg', '20220301.sh', '20220301.si', '20220301.simple', '20220301.sk', '20220301.sl', '20220301.sm', '20220301.sn', '20220301.so', '20220301.sq', '20220301.sr', '20220301.srn', '20220301.ss', '20220301.st', '20220301.stq', '20220301.su', '20220301.sv', '20220301.sw', '20220301.szl', '20220301.ta', '20220301.tcy', '20220301.te', '20220301.tet', '20220301.tg', '20220301.th', '20220301.ti', '20220301.tk', '20220301.tl', '20220301.tn', '20220301.to', '20220301.tpi', '20220301.tr', '20220301.ts', '20220301.tt', '20220301.tum', '20220301.tw', '20220301.ty', '20220301.tyv', '20220301.udm', '20220301.ug', '20220301.uk', '20220301.ur', '20220301.uz', '20220301.ve', '20220301.vec', '20220301.vep', '20220301.vi', '20220301.vls', '20220301.vo', '20220301.wa', '20220301.war', '20220301.wo', '20220301.wuu', '20220301.xal', '20220301.xh', '20220301.xmf', '20220301.yi', '20220301.yo', '20220301.za', '20220301.zea', '20220301.zh', '20220301.zh-classical', '20220301.zh-min-nan', '20220301.zh-yue', '20220301.zu']\r\n```\r\n\r\nSo I guess adding the latest dumps versions to the `BuilderConfig` may solve the problem? But how to add it?", "Hi, @beyondguo, thanks for reporting.\r\n\r\nYou have all the information in the dataset card: https://huggingface.co/datasets/wikipedia\r\n\r\n> Then, you can load any subset of Wikipedia per language and per date this way:\r\n> ```python\r\n> from datasets import load_dataset\r\n> \r\n> load_dataset(\"wikipedia\", language=\"sw\", date=\"20220120\", beam_runner=...) \r\n> ```\r\n> where you can pass as beam_runner any Apache Beam supported runner for (distributed) data processing (see [here](https://beam.apache.org/documentation/runners/capability-matrix/)). Pass \"DirectRunner\" to run it on your machine.\r\n> \r\n> You can find the full list of languages and dates [here](https://dumps.wikimedia.org/backup-index.html).\r\n\r\nNote that you have to pass the language and date as keyword arguments, and the available dates depend on the language and can be found on Wikimedia website.", "Also:\r\n> Some subsets of Wikipedia have already been processed by HuggingFace, and you can load them just with:\r\n> ```python\r\n> load_dataset(\"wikipedia\", \"20220301.en\")\r\n> ```\r\n> The list of pre-processed subsets is:\r\n> - \"20220301.de\"\r\n> - \"20220301.en\"\r\n> - \"20220301.fr\"\r\n> - \"20220301.frr\"\r\n> - \"20220301.it\"\r\n> - \"20220301.simple\"" ]
2022-11-01T03:17:55
2022-11-02T08:27:15
2022-11-02T08:24:29
NONE
null
### Describe the bug I tried: `data = load_dataset('wikipedia', '20220301.zh', beam_runner='DirectRunner')` and `data = load_dataset("wikipedia", language="zh", date="20220301", beam_runner='DirectRunner')` but both got: `FileNotFoundError: Couldn't find file at https://dumps.wikimedia.org/zhwiki/20220301/dumpstatus.json` the full report is: ``` FileNotFoundError Traceback (most recent call last) <ipython-input-13-d07c5021090c> in <module> 1 from datasets import load_dataset 2 ----> 3 data = load_dataset("wikipedia", language="zh", date="20220301", beam_runner='DirectRunner')<?, ?it/s] /opt/conda/lib/python3.8/site-packages/datasets/load.py in load_dataset(path, name, data_dir, data_files, split, cache_dir, features, download_config, download_mode, ignore_verifications, keep_in_memory, save_infos, revision, use_auth_token, task, streaming, **config_kwargs) 1740 1741 # Download and prepare data -> 1742 builder_instance.download_and_prepare( 1743 download_config=download_config, 1744 download_mode=download_mode, /opt/conda/lib/python3.8/site-packages/datasets/builder.py in download_and_prepare(self, output_dir, download_config, download_mode, ignore_verifications, try_from_hf_gcs, dl_manager, base_path, use_auth_token, file_format, max_shard_size, storage_options, **download_and_prepare_kwargs) 812 **download_and_prepare_kwargs, 813 } --> 814 self._download_and_prepare( 815 dl_manager=dl_manager, 816 verify_infos=verify_infos, /opt/conda/lib/python3.8/site-packages/datasets/builder.py in _download_and_prepare(self, dl_manager, verify_infos, **prepare_splits_kwargs) 1645 options=beam_options, 1646 ) -> 1647 super()._download_and_prepare( 1648 dl_manager, verify_infos=False, pipeline=pipeline, **prepare_splits_kwargs 1649 ) # TODO handle verify_infos in beam datasets /opt/conda/lib/python3.8/site-packages/datasets/builder.py in _download_and_prepare(self, dl_manager, verify_infos, **prepare_split_kwargs) 881 split_dict = SplitDict(dataset_name=self.name) 882 split_generators_kwargs = self._make_split_generators_kwargs(prepare_split_kwargs) --> 883 split_generators = self._split_generators(dl_manager, **split_generators_kwargs) 884 885 # Checksums verification ~/.cache/huggingface/modules/datasets_modules/datasets/wikipedia/aa542ed919df55cc5d3347f42dd4521d05ca68751f50dbc32bae2a7f1e167559/wikipedia.py in _split_generators(self, dl_manager, pipeline) 943 info_url = _base_url(lang) + _INFO_FILE 944 # Use dictionary since testing mock always returns the same result. --> 945 downloaded_files = dl_manager.download_and_extract({"info": info_url}) 946 947 xml_urls = [] /opt/conda/lib/python3.8/site-packages/datasets/download/download_manager.py in download_and_extract(self, url_or_urls) 431 extracted_path(s): `str`, extracted paths of given URL(s). 432 """ --> 433 return self.extract(self.download(url_or_urls)) 434 435 def get_recorded_sizes_checksums(self): /opt/conda/lib/python3.8/site-packages/datasets/download/download_manager.py in download(self, url_or_urls) 308 309 start_time = datetime.now() --> 310 downloaded_path_or_paths = map_nested( 311 download_func, 312 url_or_urls, /opt/conda/lib/python3.8/site-packages/datasets/utils/py_utils.py in map_nested(function, data_struct, dict_only, map_list, map_tuple, map_numpy, num_proc, parallel_min_length, types, disable_tqdm, desc) 427 num_proc = 1 428 if num_proc <= 1 or len(iterable) < parallel_min_length: --> 429 mapped = [ 430 _single_map_nested((function, obj, types, None, True, None)) 431 for obj in logging.tqdm(iterable, disable=disable_tqdm, desc=desc) /opt/conda/lib/python3.8/site-packages/datasets/utils/py_utils.py in <listcomp>(.0) 428 if num_proc <= 1 or len(iterable) < parallel_min_length: 429 mapped = [ --> 430 _single_map_nested((function, obj, types, None, True, None)) 431 for obj in logging.tqdm(iterable, disable=disable_tqdm, desc=desc) 432 ] /opt/conda/lib/python3.8/site-packages/datasets/utils/py_utils.py in _single_map_nested(args) 329 # Singleton first to spare some computation 330 if not isinstance(data_struct, dict) and not isinstance(data_struct, types): --> 331 return function(data_struct) 332 333 # Reduce logging to keep things readable in multiprocessing with tqdm /opt/conda/lib/python3.8/site-packages/datasets/download/download_manager.py in _download(self, url_or_filename, download_config) 335 # append the relative path to the base_path 336 url_or_filename = url_or_path_join(self._base_path, url_or_filename) --> 337 return cached_path(url_or_filename, download_config=download_config) 338 339 def iter_archive(self, path_or_buf: Union[str, io.BufferedReader]): /opt/conda/lib/python3.8/site-packages/datasets/utils/file_utils.py in cached_path(url_or_filename, download_config, **download_kwargs) 186 if is_remote_url(url_or_filename): 187 # URL, so get it from the cache (downloading if necessary) --> 188 output_path = get_from_cache( 189 url_or_filename, 190 cache_dir=cache_dir, /opt/conda/lib/python3.8/site-packages/datasets/utils/file_utils.py in get_from_cache(url, cache_dir, force_download, proxies, etag_timeout, resume_download, user_agent, local_files_only, use_etag, max_retries, use_auth_token, ignore_url_params, download_desc) 533 ) 534 elif response is not None and response.status_code == 404: --> 535 raise FileNotFoundError(f"Couldn't find file at {url}") 536 _raise_if_offline_mode_is_enabled(f"Tried to reach {url}") 537 if head_error is not None: FileNotFoundError: Couldn't find file at https://dumps.wikimedia.org/zhwiki/20220301/dumpstatus.json ``` ### Steps to reproduce the bug `data = load_dataset('wikipedia', '20220301.zh', beam_runner='DirectRunner')` ### Expected behavior download the data ### Environment info python3.6 latest datasets/transformers version
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PR_kwDODunzps5B55iV
5,177
Update create image dataset docs
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-31T17:45:56
2022-11-02T17:15:22
2022-11-02T17:13:02
MEMBER
null
Based on @osanseviero and community feedback, it wasn't super clear how to upload a dataset to the Hub after creating something like an image captioning dataset. This PR adds a brief section on how to upload the dataset with `push_to_hub`.
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1,430,214,539
I_kwDODunzps5VP1eL
5,176
prepare dataset for cloud storage doesn't work
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[ "It looks like an issue with `gcsfs`, are you able to instantiate a `GCSFileSystem` manually ?", "closing since it was probably due to gcsfs" ]
2022-10-31T17:28:57
2023-03-28T09:11:46
2023-03-28T09:11:45
NONE
null
### Describe the bug Following the [documentation](https://huggingface.co/docs/datasets/filesystems#load-and-save-your-datasets-using-your-cloud-storage-filesystem) and [this PR](https://github.com/huggingface/datasets/pull/4724), I was downloading and storing huggingface dataset to cloud storage. ``` from datasets import load_dataset, load_dataset_builder dataset = load_dataset_builder("wikipedia", "20220301.en", cache_dir='LOCAL_PATH') dataset.download_and_prepare("gs://Bucket_NAME", file_format="parquet") ``` The above code successfully downloaded dataset, however, it returns error from `download_and_prepare`. > Traceback (most recent call last): > File "/shared/zhuiai/research/wiki/wiki/gcsfs.py", line 12, in <module> > dataset.download_and_prepare("gs://upgen/dataset/wiki", file_format="parquet") > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/datasets/builder.py", line 671, in download_and_prepare > fs_token_paths = fsspec.get_fs_token_paths(output_dir, storage_options=storage_options) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/fsspec/core.py", line 635, in get_fs_token_paths > cls = get_filesystem_class(protocol) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/fsspec/registry.py", line 234, in get_filesystem_class > register_implementation(protocol, _import_class(bit["class"])) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/fsspec/registry.py", line 257, in _import_class > mod = importlib.import_module(mod) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/importlib/__init__.py", line 127, in import_module > return _bootstrap._gcd_import(name[level:], package, level) > File "<frozen importlib._bootstrap>", line 1030, in _gcd_import > File "<frozen importlib._bootstrap>", line 1007, in _find_and_load > File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked > File "<frozen importlib._bootstrap>", line 680, in _load_unlocked > File "<frozen importlib._bootstrap_external>", line 850, in exec_module > File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed > File "/shared/zhuiai/research/wiki/wiki/gcsfs.py", line 12, in <module> > dataset.download_and_prepare("gs://upgen/dataset/wiki", file_format="parquet") > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/datasets/builder.py", line 671, in download_and_prepare > fs_token_paths = fsspec.get_fs_token_paths(output_dir, storage_options=storage_options) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/fsspec/core.py", line 635, in get_fs_token_paths > cls = get_filesystem_class(protocol) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/fsspec/registry.py", line 234, in get_filesystem_class > register_implementation(protocol, _import_class(bit["class"])) > File "/shared/zhuiai/.conda/envs/wiki/lib/python3.9/site-packages/fsspec/registry.py", line 258, in _import_class > return getattr(mod, name) > AttributeError: partially initialized module 'gcsfs' has no attribute 'GCSFileSystem' (most likely due to a circular import) ### Steps to reproduce the bug 1. pip install datasets==2.6.1 gcsfs==2022.8.2 2. Run the following code will reproduce the issue (change `LOCAL_PATH` and `Bucket_NAME` accordingly) ``` from datasets import load_dataset, load_dataset_builder dataset = load_dataset_builder("wikipedia", "20220301.en", cache_dir='LOCAL_PATH') dataset.download_and_prepare("gs://Bucket_NAME", file_format="parquet") ``` ### Expected behavior Expecting successful downloading dataset and uploading it to cloud storage. ### Environment info - `datasets` version: 2.6.1 - Platform: Linux-5.15.0-25-generic-x86_64-with-glibc2.35 - Python version: 3.9.12 - PyArrow version: 7.0.0 - Pandas version: 1.5.1
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I_kwDODunzps5VKCyn
5,175
Loading an external NER dataset
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2022-10-30T09:31:55
2022-11-01T13:15:49
2022-11-01T13:15:49
NONE
null
I need to use huggingface datasets to load a custom dataset similar to conll2003 but with more entities and each the files contain only two columns: word and ner tag. I tried this code snnipet that I found here as an answer to a similar issue: from datasets import Dataset INPUT_COLUMNS = "ID Text NER".split() def read_conll(file): example = {col: [] for col in INPUT_COLUMNS} idx = 0 with open(file) as f: for line in f: if line.startswith("-DOCSTART-") or line == "\n" or not line: if example[next(iter(example))]: yield idx, example idx += 1 example = {col: [] for col in INPUT_COLUMNS} else: row_cols = line.split() for i, col in enumerate(example): example[col] = row_cols[i].rstrip() train = Dataset.from_generator(read_conll, gen_kwargs={"file": "some_path"}) But the following error happened: ValueError: Please pass `features` or at least one example when writing data
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5,174
Preserve None in list type cast in PyArrow 10
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-28T12:48:30
2022-10-28T13:15:33
2022-10-28T13:13:18
CONTRIBUTOR
null
The `ListArray` type in PyArrow 10.0.0 supports the `mask` parameter, which allows us to preserve Nones in nested lists in `cast` instead of replacing them with empty lists. Fix https://github.com/huggingface/datasets/issues/3676
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5,173
Raise ffmpeg warnings only once
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2022-10-27T15:58:33
2022-10-28T16:03:05
2022-10-28T16:00:51
CONTRIBUTOR
null
Our warnings looks nice now. `librosa` warning that was raised at each decoding: ``` /usr/local/lib/python3.7/dist-packages/librosa/core/audio.py:165: UserWarning: PySoundFile failed. Trying audioread instead. warnings.warn("PySoundFile failed. Trying audioread instead.") ``` is suppressed with `filterwarnings("ignore")` in a context manager. That means the first warning is also ignored (setting `filterwarnings("once")` didn't work!), so I added info that audioread is used for decoding to our message. Hope it's enough. Tests failed at first because they used to check if the warning was raised at (each) decoding in `librosa` case but now we throw only one warning (at first decoding). I removed this check for warnings, do you think it's fine?
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I_kwDODunzps5U98Gq
5,172
Inconsistency behavior between handling local file protocol and other FS protocols
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2022-10-27T12:03:20
2022-10-27T12:05:19
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### Describe the bug These lines us used during load_from_disk: ``` if is_remote_filesystem(fs): dest_dataset_dict_path = extract_path_from_uri(dataset_dict_path) else: fs = fsspec.filesystem("file") dest_dataset_dict_path = dataset_dict_path ``` If a local FS is given, then it will the URL as the path name. If a remote Fs is given, then it will use the path of the URL. This is an inconsistent behavior when handling a file: when using remote FS, you must write a URL, but for local FS, even if you passed LocalFileSystem as `fs` you still can't use a `file://` URL. It will be recognized as a directory named `file:`. ### Steps to reproduce the bug ``` import fsspec.core url = "hdfs:///somewhere/MNIST" # url = "file:///somewhere/MNIST" fs, path = fsspec.core.url_to_fs(url) fs.ls(path) # this will always work load_from_disk(path, fs) # only works for local FS load_from_disk(url, fs) # only works for remote FS ``` ### Expected behavior one of `url` or `path` should always work I think we extract path from given URL by using `fsspec.core.url_to_fs` instead of using `is_remote_filesystem` and `extract_path_from_uri` will fix this, since: ``` fsspec.core.url_to_fs("/somewhere/MNIST") -> LocalFs, '/somewhere/MNIST' fsspec.core.url_to_fs("file:///somewhere/MNIST") -> LocalFs, '/somewhere/MNIST' fsspec.core.url_to_fs("hdfs:///somewhere/MNIST") -> HDFS, '/somewhere/MNIST' ``` and ``` fsspec.core.url_to_fs("file:///somewhere/MNIST") == fsspec.core.url_to_fs("/somewhere/MNIST") ``` In theory, this wouldn't break anything, since giving local path and remote uri still works. It will only affect local URI (make it works too) ### Environment info - `datasets` version: 2.5.1 - Platform: Linux-5.4.205.1**HIDDEN** - Python version: 3.7.10 - PyArrow version: 8.0.0 - Pandas version: 1.2.4
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5,171
Add PB and TB in convert_file_size_to_int
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2022-10-27T09:50:31
2022-10-27T12:14:27
2022-10-27T12:12:30
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[Caching] Deterministic hashing of torch tensors
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2022-10-27T09:15:15
2022-11-02T17:18:43
2022-11-02T17:18:43
MEMBER
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Currently this fails ```python import torch from datasets.fingerprint import Hasher t = torch.tensor([1.]) def func(x): return t + x hash1 = Hasher.hash(func) t = torch.tensor([1.]) hash2 = Hasher.hash(func) assert hash1 == hash2 ``` Also as noticed in https://discuss.huggingface.co/t/dataset-cant-cache-models-outputs/24945, using a model in a `map` function doesn't work well with caching. Indeed the `bert-base-uncased` model has a different hash every time you reload it. Supporting torch tensors may also help in this case. This can be fixed by registering a custom pickling functions for torch tensors - as we did for other objects such as CodeType, FunctionType and Regex in `py_utils.py`
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5,169
Add "ipykernel" to list of `co_filename`s to remove
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[ "I don't know how I could add some tests for this, although jupyter is not among the dependencies so at least that would need to be added. If someone can tell a recommended way I will try to do it!", "So testing by myself and looking around the jupyter codebase it looks like the `co_filename` of objects created within jupyter is of the form `f\"{tempfile.tempdir}/ipykernel_{id1}/{id2}.py\"` however I can't find the exact command setting it so I [asked in discourse](https://discourse.jupyter.org/t/co-filename-within-notebooks/16538). For now adapted the `co_filename` filter and added tests according to this I hope to get an answer and possibly fix based on that.", "Ok ! I think it's fine to just check if the parent folder is named like `ipykernel_*` then\r\n\r\nsee the source code of how it's created:\r\n\r\nhttps://github.com/ipython/ipykernel/blob/7f73ff705510b35d1e2faad7f5a676c620ce08d4/ipykernel/compiler.py#L72-L75", "Should look better now didn't notice the duplicated tests", "_The documentation is not available anymore as the PR was closed or merged._", "Should work now on windows too", "I did the changes you suggested and tried to rebase, the first part went fine, the second less so :( \r\n\r\nIf you have time to spare, can you tell me what should I do now to fix this? thanks", "Instead of rebasing you can just merge `main` into your branch, otherwise the GitHub preview of your PR shows changes of from `main`.\r\n\r\nFeel free to close this PR and create a new one. Or alternatively your can force push to this PR with a new clean git history.", "I have force-pushed and merged main, only shows the right changes, if you can run CI one more time it should be ok now", "Hi, sorry I have been busy, the thing is I can't really understand why the test fail, besides the ugly thing I had done in the last commit to check if within CI smth stange happened with `os`, locally tests pass", "The CI wasn't passing when using the latest version `dill==0.3.6`. We have a separate function to dump CodeType objects for 0.3.6\r\n\r\nI applied the same changes you did to this other function as well - it should be all good now", "> The CI wasn't passing when using the latest version `dill==0.3.6`. We have a separate function to dump CodeType objects for 0.3.6\r\n> \r\n> I applied the same changes you did to this other function as well - it should be all good now\r\n\r\nThanks, it would have taken a long time to figure out :)" ]
2022-10-27T05:56:17
2022-11-02T15:46:00
2022-11-02T15:43:20
CONTRIBUTOR
null
Should resolve #5157
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5,168
Fix CI require beam
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[ "_The documentation is not available anymore as the PR was closed or merged._", "I'm merging this PR because it is quite a trivial fix and this is required by:\r\n- #5166" ]
2022-10-26T16:49:33
2022-10-27T09:25:19
2022-10-27T09:23:26
MEMBER
null
This PR: - Fixes the CI `require_beam`: before it was requiring PyTorch instead ```python def require_beam(test_case): if not config.TORCH_AVAILABLE: test_case = unittest.skip("test requires PyTorch")(test_case) return test_case ``` - Fixes a missing `require_beam` in `test_beam_based_builder_download_and_prepare_as_parquet` - Refactors `require_beam` to use `pytest` (`skipif`) instead
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PR_kwDODunzps5BljPw
5,167
Add ffmpeg4 installation instructions in warnings
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[ "_The documentation is not available anymore as the PR was closed or merged._", "To make it warn only once, feel free to use a global counter in python - and if the warning has already been done, you don't do it again", "> Added the same formatting for the error message :)\r\n\r\nnice!! thank you! \r\n\r\n> Oh and regarding the warning counter, you can do it in another PR maybe ?\r\n\r\nYes, more warnings is better then no warnings.... I'll merge when the CI passes" ]
2022-10-26T14:21:14
2022-10-27T09:01:12
2022-10-27T08:58:58
CONTRIBUTOR
null
Adds instructions on how to install `ffmpeg=4` on Linux (relevant for Colab users). Looks pretty ugly because I didn't find a way to check `ffmpeg` version from python (without `subprocess.call()`; `ctypes.util.find_library` doesn't work`), so the warning is raised on each decoding. Any suggestions on how to make it look nice are welcome! This is how it looks on Colab: ![image](https://user-images.githubusercontent.com/16348744/198052412-d48018d1-4416-4aa5-9114-f7f9b4af031f.png)
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5,166
Support dill 0.3.6
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[ "_The documentation is not available anymore as the PR was closed or merged._", "I think it hasn't been merged ? https://github.com/uqfoundation/dill/pull/501\r\n\r\nThough I can see that the CI is green because it uses dill 0.3.1.1 - we should probably fix the dill version in both CIs:\r\n- use 0.3.1.1 for the CI with the minimum requirements\r\n- use latest for the CI with the latest requirements", "I have noticed our CI uses `dill-0.3.1.1`, so not really testing dill 0.3.6...", "The dill version in our CI is due to `apache-beam`...", "I've tested locally: we need a specific fix for 0.3.6 (different from the previous ones)...", "I think we can force the version of dill to be whatever we want in the CI - no matter what beam says. The alternative would be to run beam tests separately but it's more work", "@lhoestq I tried the easiest solution: force dill==0.3.6 ignoring the requirement of apache-beam. But it doesn't work:\r\n- For example, for `tests/test_builder.py::test_beam_based_builder_download_and_prepare_as_parquet`:\r\n```\r\n @dill.dill.register(dill.dill.ModuleType)\r\n def save_module(pickler, obj):\r\n if dill.dill.is_dill(pickler) and obj is pickler._main:\r\n return old_save_module(pickler, obj)\r\n else:\r\n> dill.dill.log.info('M2: %s' % obj)\r\nE AttributeError: module 'dill._dill' has no attribute 'log'\r\n\r\nvenv/lib/python3.9/site-packages/apache_beam/internal/dill_pickler.py:170: AttributeError\r\n```\r\n - Apache Beam registers some dill functions (`save_module`) which are incompatible with dill 0.3.6 (in 0.3.6 'dill._dill' has no attribute 'log' but 'logger')\r\n - This has an impact in CI tests using either Apache Beam or `multiprocess` (even without using Apache Beam!):\r\n```\r\nFAILED tests/test_beam.py::BeamBuilderTest::test_download_and_prepare - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_beam.py::BeamBuilderTest::test_nested_features - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_filter_multiprocessing_in_memory - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_filter_multiprocessing_on_disk - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_builder.py::test_beam_based_download_and_prepare - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_caching_in_memory - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_caching_on_disk - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_builder.py::test_beam_based_as_dataset - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_multiprocessing_in_memory - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_multiprocessing_on_disk - AttributeError: module 'dill._dill' has no attribute 'log'\r\nFAILED tests/test_builder.py::test_beam_based_builder_download_and_prepare_as_parquet - AttributeError: module 'dill._dill' has no attribute 'log'\r\n```\r\n\r\nI guess we should implement the other option: run beam tests separately.\r\n\r\nI'm opening another PR for the CI refactoring.", "Ah crap >< maybe only install apache_beam for the \"minimum requirements\" CI", "@lhoestq if we install apache-beam only in the \"minimum requirements\" CI, then this other PR should be merged first:\r\n- #5168 \r\n\r\nOtherwise, our CI for \"latest\" will fail because it will try to run the beam tests (because PyTorch is installed but indeed apache-beam is not installed).", "One of the test is failing because we set \r\n```python\r\n# google colab doesn't allow to pickle loggers\r\n# so we want to make sure each tests passes without pickling the logger\r\ndef reduce_ex(self):\r\n raise pickle.PicklingError()\r\n\r\ndatasets.arrow_dataset.logger.__reduce_ex__ = reduce_ex\r\n```\r\nin `test_arrow_dataset.py` to avoid pickling the logger because it used to fail on google colab.\r\n\r\nNow pickling the logger seems to be working on google colab again - so you can remove it, and it should fix some tests", "For the other 2 errors:\r\n- FAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_caching_in_memory - _pickle.PicklingError: Can't pickle <class 'unittest.mock.MagicMock'>: it's not the same object as unittest.mock.MagicMock\r\n- FAILED tests/test_arrow_dataset.py::BaseDatasetTest::test_map_caching_on_disk - _pickle.PicklingError: Can't pickle <class 'unittest.mock.MagicMock'>: it's not the same object as unittest.mock.MagicMock\r\n\r\nI have implemented a pickable MagicMock." ]
2022-10-26T08:24:59
2022-10-28T05:41:05
2022-10-28T05:38:14
MEMBER
null
This PR: - ~~Unpins dill to allow installing dill>=0.3.6~~ - ~~Removes the fix on dill for >=0.3.6 because they implemented a deterministic mode (to be confirmed by @anivegesana)~~ - Pins dill<0.3.7 to allow latest dill 0.3.6 - Implements a fix for dill `save_function` for dill 0.3.6 - Additionally had to implement a fix for dill `save_code` and `_save_regex` for dill 0.3.6 - Fixes the CI so that the latest dill version is tested (besides the minimum 0.3.1.1 required by apache-beam 2.42.0) Fix #5162.
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5,165
Memory explosion when trying to access 4d tensors in datasets cast to torch or np
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2022-10-26T08:14:47
2022-10-26T08:14:47
null
CONTRIBUTOR
null
### Describe the bug When trying to access an item by index, in a datasets.Dataset cast to torch/np using `set_format` or `with_format`, we get a memory explosion if the item contains 4d (or above) tensors. ### Steps to reproduce the bug MWE: ```python from datasets import load_dataset import numpy as np def create_4d_tensor(item): i = item["num_nodes"] item["x_big"] = np.random.rand(i, 2*i, int(i/2), 1) + 1 # we create a big 4d tensor return item if __name__ == "__main__": dataset = load_dataset(path=f"graphs-datasets/PROTEINS") # This works print(dataset["train"].format) print(dataset["train"][0].keys()) dataset = dataset.map( create_4d_tensor, batched=False, writer_batch_size=100, ) # This works print(dataset["train"].format) print(dataset["train"][0].keys()) dataset.set_format("torch") print(dataset["train"].format) # This gets killed :( print(dataset["train"][0].keys()) ``` The problem likely comes from `format_table` [here](https://cs.github.com/huggingface/datasets/blob/f09f781be3278156ce3aa6ec90c1926b1846a78f/src/datasets/arrow_dataset.py#L2328) ### Expected behavior No memory explosion when trying to access dataset items after cast. ### Environment info - `datasets` version: 2.3.2 - Platform: Linux-5.14.0-1054-oem-x86_64-with-glibc2.29 - Python version: 3.8.10 - PyArrow version: 8.0.0 - Pandas version: 1.4.3
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5,164
WIP: drop labels in Image and Audio folders by default
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[ "_The documentation is not available anymore as the PR was closed or merged._", "close in favor of https://github.com/huggingface/datasets/pull/5192" ]
2022-10-25T17:21:49
2022-11-16T14:21:16
2022-11-02T14:03:02
CONTRIBUTOR
null
will fix https://github.com/huggingface/datasets/issues/5153 and redundant labels displaying for most of the images datasets on the Hub (which are used just to store files) TODO: discuss adding `drop_labels` (and `drop_metadata`) params to yaml
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Reduce default max `writer_batch_size`
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-25T14:14:52
2022-10-27T12:19:27
2022-10-27T12:16:47
CONTRIBUTOR
null
Reduce the default writer_batch_size from 10k to 1k examples. Additionally, align the default values of `batch_size` and `writer_batch_size` in `Dataset.cast` with the values from the corresponding docstring.
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Pip-compile: Could not find a version that matches dill<0.3.6,>=0.3.6
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[ "Thanks for reporting, @Rijgersberg.\r\n\r\nWe were waiting for the release of `dill` 0.3.6, that happened 2 days ago (24 Oct 2022): https://github.com/uqfoundation/dill/releases/tag/dill-0.3.6\r\n- See comment: https://github.com/huggingface/datasets/pull/4397#discussion_r880629543\r\n\r\nAlso `multiprocess` 0.70.14 was released 2 days ago: https://github.com/uqfoundation/multiprocess/releases/tag/multiprocess-0.70.14\r\n\r\nWe are addressing this issue to align dependencies.", "In your specific setup, I guess the compatible configuration is with `multiprocess` 0.70.13 (instead of 0.70.14).", "@Rijgersberg this issue is fixed. It will be available in our next `datasets` release.", "Thanks!", "> @Rijgersberg this issue is fixed. It will be available in our next `datasets` release.\n\nAny chance you have a eta? ", "@StefanSamba we are disussing about making a release early this week.", "@Rijgersberg, please also that you can make `pip-compile` work by using the backtracking resolver (instead of the legacy one): https://pip-tools.readthedocs.io/en/latest/#a-note-on-resolvers\r\n```\r\npip-compile --resolver=backtracking requirements.in\r\n```\r\nThis resolver will automatically use `multiprocess` 0.70.13 version. " ]
2022-10-25T13:23:50
2022-11-14T08:25:37
2022-10-28T05:38:15
NONE
null
### Describe the bug When using `pip-compile` (part of `pip-tools`) to generate a pinned requirements file that includes `datasets`, a version conflict of `dill` appears. It is caused by a transitive dependency conflict between `datasets` and `multiprocess`. ### Steps to reproduce the bug ```bash $ echo "datasets" > requirements.in $ pip install pip-tools $ pip-compile requirements.in Could not find a version that matches dill<0.3.6,>=0.3.6 (from datasets==2.6.1->-r requirements.in (line 1)) Tried: 0.2, 0.2, 0.2.1, 0.2.1, 0.2.2, 0.2.2, 0.2.3, 0.2.3, 0.2.4, 0.2.4, 0.2.5, 0.2.5, 0.2.6, 0.2.7, 0.2.7.1, 0.2.8, 0.2.8.1, 0.2.8.2, 0.2.9, 0.3.0, 0.3.1, 0.3.1.1, 0.3.2, 0.3.3, 0.3.3, 0.3.4, 0.3.4, 0.3.5, 0.3.5, 0.3.5.1, 0.3.5.1, 0.3.6, 0.3.6 Skipped pre-versions: 0.1a1, 0.2a1, 0.2a1, 0.2b1, 0.2b1 There are incompatible versions in the resolved dependencies: dill<0.3.6 (from datasets==2.6.1->-r requirements.in (line 1)) dill>=0.3.6 (from multiprocess==0.70.14->datasets==2.6.1->-r requirements.in (line 1)) ``` ### Expected behavior A correctly generated file `requirements.txt` with pinned dependencies ### Environment info Tested with versions `2.6.1, 2.6.0, 2.5.2` on Python 3.8 and 3.10 on Ubuntu 20.04LTS and Python 3.10 on MacOS 12.6 (M1).
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Dataset can’t cache model’s outputs
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[ "Addressed in https://github.com/huggingface/datasets/pull/5191 (torch.Tensor objects now produce deterministic hashes)" ]
2022-10-25T12:19:00
2022-11-03T16:12:52
2022-11-03T16:12:51
NONE
null
### Describe the bug Hi, I try to cache some outputs of teacher model( Knowledge Distillation ) by using map function of Dataset library, while every time I run my code, I still recompute all the sequences. I tested Bert Model like this, I got different hash every single run, so any idea to deal with this? ### Steps to reproduce the bug 1. run below code 2. get different hash ``` from transformers import BertModel from transformers import AutoTokenizer import torch token = ['hello'] model = BertModel.from_pretrained("bert-base-uncased").eval() tok = AutoTokenizer.from_pretrained("bert-base-uncased") def abcd(): with torch.no_grad(): out = model(**tok(token,return_tensors='pt'))[0] # out = tok(token) return out from datasets.fingerprint import Hasher my_func = abcd print(Hasher.hash(my_func)) print(abcd()) ``` ### Expected behavior I wanna cache all the model output ### Environment info datasets:2.5.0
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Automatically add filename for image/audio folder
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[ "Also cc @anton-l ", "BTW the exact same holds true for the audio folder", "I'm fine with adding a new column with the file name personally. Not sure how breaking this is though", "@patrickvonplaten do you mean just filename or full relative path inside the repo?\r\nI think it shouldn't be breaking, at least I cannot come up with any case where it is. Maybe @mariosasko can?\r\n\r\nalso I think that the problem here and in general is that Image/AudioFolder has default configuration which implies automatic label creation if there is not metadata file. It can be changed when you load the dataset with `load_dataset` but not on it's Hub page. \r\n\r\n", "> also I think that the problem here and in general Image/AudioFolder has default configuration which implies automatic label creation if there is not metadata file\r\n\r\nYea I agree it's often the wrong default. We can also imagine adding the builder's parameters as YAML in the repo.", "@lhoestq yes I also got the idea of some YAML config! not sure of what priority it is though.", "but it would actually also solve this issue: https://github.com/huggingface/datasets/issues/5153", "I meant just the file name (no path) that would already be super helpful IMO :-) (maybe dir+filename if there are dirs in the folder)", "@patrickvonplaten one more time, to be sure I understand you.\r\nFor example, we have data structure like this:\r\n```\r\n├─ data/\r\n│ └─ subdir/\r\n│ └── cats/\r\n│ ├── 0.jpg\r\n│ ├── 1.jpg\r\n│ └── 2.jpg\r\n│ └── dogs/\r\n│ ├── 0.jpg\r\n│ ├── 1.jpg\r\n│ └── 2.jpg\r\n└── another_subdir/\r\n ├── 10.jpg\r\n ├── 11.jpg\r\n └── 12.jpg\r\n```\r\nIs it okay to provide `\"data/subdir/cats/0.jpg\"`, `\"data/subdir/dogs/0.jpg\"`, `\"data/another_subdir/10.jpg\"`?\r\nI think providing just filenames might be confusing if they are not unique, as in this example. ", "Yes I think the relative path as you proposed makes a lot of sense :-) " ]
2022-10-25T09:56:49
2022-10-26T16:51:46
null
MEMBER
null
### Feature request When creating a custom audio of image dataset, it would be great to automatically have access to the filename. It should be both: a) Automatically displayed in the viewer b) Automatically added as a column to the dataset when doing `load_dataset` In `diffusers` our test rely quite heavily on images and audio files now and it's a bit tedious at the moment to download specific images from a datasets repo. E.g. we have a dataset of images for tests in `diffusers`: https://huggingface.co/datasets/hf-internal-testing/diffusers-images where it would be extremely nice to have direct access to the filename both visually on the datasets page (@severo ) as well as via the `load_datasets` function. We currently have some akward functionality to download images by path name: https://github.com/huggingface/diffusers/blob/2fb8fafa4b761f6fc144cf75a6f6f0ea6af3a1c1/src/diffusers/utils/testing_utils.py#L131 It would be much nicer to just go over `load_dataset(...)` ### Motivation Intuitively the filename is something people understand directly. E.g if you upload a folder of images online, it's nice if you recognize the image as well as the filename next to it directly and that you're able to use it right away. The label on the other hand is less intuitive to understand as you haven't added it yourself. ### Your contribution Not sure if I have the time to add it myself anytime soon, but it would help us a lot for `diffusers`.
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fsspec lock reset in multiprocessing
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-25T09:41:59
2022-11-03T20:51:15
2022-11-03T20:48:53
MEMBER
null
`fsspec` added a clean way of resetting its lock - instead of doing it manually
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Fix language and license tag names in all Hub datasets
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[ "There are currently 402 datasets with deprecated \"languages\" or \"licenses\".", "hey @albertvillanova ,i would love to work on this issue if you like.", "Hi @ayushthe1, thanks for your offer.\r\n\r\nBut as you can see, I self-assigned this issue.\r\n\r\nI have already fixed 200 out of the 402 datasets. My script is still running and fixing the rest.\r\n\r\nFor example: https://huggingface.co/datasets/fhamborg/news_sentiment_newsmtsc/discussions/2/files", "Thanks for your time. Will try next time. 😇", "@ayushthe1 feel free to take one of the non-assigned open issues: https://github.com/huggingface/datasets/issues", "This is done." ]
2022-10-25T08:19:29
2022-10-25T11:27:26
2022-10-25T10:42:19
MEMBER
null
While working on this: - #5137 we realized there are still many datasets with deprecated "languages" and "licenses" tag names (instead of "language" and "license"). This is a blocking issue: no subsequent PR can be opened to modify their metadata: a ValueError will be thrown. We should fix the "language" and "license" tag names in all Hub datasets. TODO: - [x] Fix language and license tag names in 402 Hub datasets CC: @julien-c
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Consistent caching between python and jupyter
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[ "Hi ! Maybe it's possible to have a consistent hash for a function defined in `__main__` and a function define in a notebook.\r\n\r\nHowever for functions imported from another location, pickle uses the location to identify the code, so in that case we can't do much I believe.\r\n\r\nWould it be ok for you if we only try to do this for functions in `__main__` / jupyter ?\r\n\r\nIf you'd like to contribute, you can read this part of the code and let me know if you have questions:\r\n\r\nhttps://github.com/huggingface/datasets/blob/7feeb5648a63b6135a8259dedc3b1e19185ee4c7/src/datasets/utils/py_utils.py#L617-L643\r\n\r\nI think the key here would be to also ignore the \"co_filename\" of functions defined in `__main__`", "Seems like a good solution, I will start a PR and see if I understood the changes needed. Thanks!" ]
2022-10-25T01:34:33
2022-11-02T15:43:22
2022-11-02T15:43:22
CONTRIBUTOR
null
### Feature request I hope this is not my mistake, currently if I use `load_dataset` from a python session on a custom dataset to do the preprocessing, it will be saved in the cache and in other python sessions it will be loaded from the cache, however calling the same from a jupyter notebook does not work, meaning the preprocessing starts from scratch. If adjusting the hashes is impossible, is there a way to manually set dataset fingerprint to "force" this behaviour? ### Motivation If this is not already the case and I am doing something wrong, it would be useful to have the two fingerprints consistent so one can create the dataset once and then try small things on jupyter without preprocessing everything again. ### Your contribution I am happy to try a PR if you give me some pointers where the changes should happen
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Unable to download dataset using Azure Data Lake Gen 2
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[ "Hi ! From the `adlfs` docs, there are two filesystems you can use:\r\n> To use the Gen1 filesystem:\r\n> - known_implementations[‘adl’] = {‘class’: ‘adlfs.AzureDatalakeFileSystem’}\r\n> \r\n> To use the Gen2 filesystem:\r\n> - known_implementations[‘abfs’] = {‘class’: ‘adlfs.AzureBlobFileSystem’}\r\n\r\nIf I'm not mistaken you're using the second one - so you should use `abfs://` instead of `adl://`, and also run this at the beginning of your script:\r\n```python\r\nfrom fsspec.registry import known_implementations\r\nknown_implementations['abfs'] = {'class': 'adlfs.AzureDatalakeFileSystem'}\r\n```\r\n\r\n", "Thank you @lhoestq . Great call.\r\nUsing the default class from `known_implementations` dict solved my problem\r\n```\r\nknown_implementations[‘abfs’] = {‘class’: ‘adlfs.AzureBlobFileSystem’}\r\n```\r\nI'm closing this issue." ]
2022-10-25T00:43:18
2022-11-17T23:37:09
2022-11-17T23:37:08
NONE
null
### Describe the bug When using the DatasetBuilder method with the credentials for the cloud storage Azure Data Lake (adl) Gen2, the following error is showed: ``` Traceback (most recent call last): File "download_hf_dataset.py", line 143, in <module> main() File "download_hf_dataset.py", line 102, in main builder.download_and_prepare(save_dir, storage_options=storage_options, max_shard_size="250MB", file_format="parquet") File "/home/clarisses/miniconda3/envs/hf_datasets_env/lib/python3.8/site-packages/datasets/builder.py", line 671, in download_and_prepare fs_token_paths = fsspec.get_fs_token_paths(output_dir, storage_options=storage_options) File "/home/clarisses/miniconda3/envs/hf_datasets_env/lib/python3.8/site-packages/fsspec/core.py", line 639, in get_fs_token_paths fs = cls(**options) File "/home/clarisses/miniconda3/envs/hf_datasets_env/lib/python3.8/site-packages/fsspec/spec.py", line 76, in __call__ obj = super().__call__(*args, **kwargs) TypeError: __init__() got an unexpected keyword argument 'account_name' ``` If I don't pass the storage_options argument (leave it as None), it requires the credentials used in ADL Gen 1: `TypeError: __init__() missing 3 required positional arguments: 'tenant_id', 'client_id', and 'client_secret'` Thus, it is not possible to download a dataset from the cloud using Azure Data Lake (adl) Gen2. ### Steps to reproduce the bug Assuming that you have an account on Azure and at Storage Account that can be used for reproduce: 1. Create a dict with the format to connect to Azure Data Lake Gen 2 ``` storage_options = {"account_name": ACCOUNT_NAME, "account_key": ACCOUNT_KEY) # gen 2 filesystem ``` 2. Create a dataset builder for any HF hosted dataset ``` builder = load_dataset_builder(dataset_name) ``` 3. Try to download the dataset passing the storage_options as an argument ``` save_dir = 'adl://my_save_dir' builder.download_and_prepare(save_dir, storage_options=storage_options, max_shard_size="250MB", file_format="parquet") ``` ### Expected behavior Not seeing the error mentioned above and being able to download the dataset to the provided path on ADL ### Environment info - `datasets` version: 2.6.1 - Platform: Linux-5.15.0-46-generic-x86_64-with-glibc2.17 - Python version: 3.8.13 - PyArrow version: 9.0.0 - Pandas version: 1.5.1
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TextConfig: added "errors"
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[ "_The documentation is not available anymore as the PR was closed or merged._", "Thanks for adding this ! You can fix the CI by formatting your code using the `make style` command :)", "[**@lhoestq**](https://github.com/lhoestq) commented on [Oct 27, 2022, 4:08 PM GMT+3:30](https://github.com/huggingface/datasets/pull/5155#issuecomment-1293464680 \"2022-10-27T12:38:04Z - Replied by Github Reply Comments\"):\r\n> Thanks for adding this ! You can fix the CI by formatting your code using the `make style` command :)\r\n\r\nI ran this and force pushed the changes." ]
2022-10-24T18:56:52
2022-11-03T13:38:13
2022-11-03T13:35:35
CONTRIBUTOR
null
This patch adds the ability to set the `errors` option of `open` for loading text datasets. I needed it because some data I had scraped had bad bytes in it, so I needed `errors='ignore'`.
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Test latest fsspec in CI
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[ "_The documentation is not available anymore as the PR was closed or merged._", "actually the latest fsspec is already installed " ]
2022-10-24T17:18:13
2022-10-25T09:32:51
2022-10-25T09:30:45
MEMBER
null
Following the discussion in https://discuss.huggingface.co/t/attributeerror-module-fsspec-has-no-attribute-asyn/19255 I think we need to test the latest fsspec in the CI
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default Image/AudioFolder infers labels when there is no metadata files even if there is only one dir
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[ "Makes sense! For the last structure, we could count the path segments (delimited by \"/\" for URLs and `os.sep` for local paths) to ensure all inferred labels are on the same level. Otherwise, I think it's safe to assume they are meaningless and ignore them.\r\n" ]
2022-10-24T13:28:18
2022-11-15T16:31:10
2022-11-15T16:31:09
CONTRIBUTOR
null
### Describe the bug By default FolderBasedBuilder infers labels if there is not metadata files, even if it's meaningless (for example, they are in a single directory or in the root folder, see this repo as an example: https://huggingface.co/datasets/patrickvonplaten/audios As this is a corner case for quick exploration of images or audios on the Hub. ### Steps to reproduce the bug If you have directory like this: ``` repo image1.jpg image2.jpg image3.jpg ``` or ``` repo data image1.jpg image2.jpg image3.jpg ``` doing `ds = load_dataset(repo)` would create `label` feature: ```python print(ds["train"][0]) >> {'image': <PIL.JpegImagePlugin.JpegImageFile image mode=RGB size=500x375 at 0x7FB5326468E0>, 'label': 0} ``` Also, if you have the following structure: ``` repo data image1.jpg image2.jpg image3.jpg image4.jpg image5.jpg image6.jpg ``` it will infer two labels: ```python print(ds["train"][0]) print(ds["train"][-1]) >> {'image': <PIL.JpegImagePlugin.JpegImageFile image mode=RGB size=500x375 at 0x7FB5326468E0>, 'label': 1} >> {'image': <PIL.JpegImagePlugin.JpegImageFile image mode=RGB size=500x415 at 0x7FB5326555B0>, 'label': 0} ``` ### Expected behavior We should have only one base feature (Image/Audio) in such cases. ### Environment info all versions of `datasets`
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refactor FolderBasedBuilder and Image/AudioFolder tests
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2022-10-24T13:11:52
2022-10-24T13:11:52
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CONTRIBUTOR
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Tests for FolderBasedBuilder, ImageFolder and AudioFolder are mostly duplicating each other. They need to be refactored and Audio/ImageFolder should have only tests specific to the loader.
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Add support to create different configs with `push_to_hub` (+ inferring configs from directories with package managers?)
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null
[ "also asked in https://discuss.huggingface.co/t/create-multiple-dataset-configs-with-push-to-hub-method/25480" ]
2022-10-24T12:59:18
2022-11-04T14:55:20
null
CONTRIBUTOR
null
Now one can push only different splits within one default config of a dataset. Would be nice to allow something like: ``` ds.push_to_hub(repo_name, config=config_name) ``` I'm not sure, but this will probably require changes in `data_files.py` patterns. If so, it would also allow to create different configs for packaged modules datasets.
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5,150
Problems after upgrading to 2.6.1
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[ "Hi! I can't reproduce the error following these steps. Can you please provide a reproducible example?", "I faced the same issue:\r\n\r\n### Repro\r\n```\r\n!pip install datasets==2.6.1\r\nimport datasets as Dataset\r\ndataset = Dataset.from_pandas(dataframe)\r\ndataset.save_to_disk(local)\r\n\r\n!pip install datasets==2.5.2\r\nimport datasets as Dataset\r\ndataset = Dataset.load_from_disk(local)\r\n```\r\n\r\n", "@Lokiiiiii And what are the contents of the \"dataframe\" in your example?", "I bumped into the issue too. @Lokiiiiii thanks for steps. I \"solved\" if for now by `pip install datasets>=2.6.1` everywhere.", "Hi all, \r\nI experienced the same issue. \r\nPlease note that the pull request is related to the IMDB example provided in the doc, and is a fix for that, in that context, to make sure that people can follow the doc example and have a working system. \r\nIt does not provide a fix for Datasets itself. ", "im getting the same error.\r\n- using the base AWS HF container that uses a datasets <2.\r\n- updating the AWS HF container to use dataset 2.4\r\n", "Same here, running on our SageMaker pipelines. It's only happening for some but not all of our saved Datasets.", "I am also receiving this error on Sagemaker but not locally, I have noticed that this occurs when the `.dataset/` folder does not contain a single file like:\r\n\r\n`dataset.arrow`\r\n\r\nbut instead contains multiple files like:\r\n\r\n`data-00000-of-00002.arrow`\r\n`data-00001-of-00002.arrow`\r\n\r\nI think that it may have something to do with this recent PR that updated the behaviour of `dataset.save_to_disk` by introducing sharding: https://github.com/huggingface/datasets/pull/5268\r\n\r\nFor now I can get around this by forcing datasets==2.8.0 on machine that creates dataset and in the huggingface instance for training (by running this at the start of training script `os.system(\"pip install datasets==2.8.0\")`)\r\n\r\nTo ensure the dataset is a single shard when saving the dataset locally:\r\n\r\n```python3\r\ndataset.flatten_indices().save_to_disk('path/to/dataset', num_shards=1)\r\n```\r\n\r\n and then manually changing the name afterwards from `path/to/dataset/data-00000-of-00001.arrow` to `path/to/dataset/dataset.arrow` and updating the `path/to/dataset/state.json` to reflect this name change. i.e. by changing `state.json` to this:\r\n\r\n```javascript\r\n{\r\n \"_data_files\": [\r\n {\r\n \"filename\": \"dataset.arrow\"\r\n }\r\n ],\r\n \"_fingerprint\": \"420086f0636f8727\",\r\n \"_format_columns\": null,\r\n \"_format_kwargs\": {},\r\n \"_format_type\": null,\r\n \"_output_all_columns\": false,\r\n \"_split\": null\r\n}\r\n```" ]
2022-10-24T11:32:36
2023-01-03T15:26:00
null
NONE
null
### Describe the bug Loading a dataset_dict from disk with `load_from_disk` is now creating a `KeyError "length"` that was not occurring in v2.5.2. Context: - Each individual dataset in the dict is created with `Dataset.from_pandas` - The dataset_dict is create from a dict of `Dataset`s, e.g., `DatasetDict({"train": train_ds, "validation": val_ds}) - The pandas dataframe, besides text columns, has a column with a dictionary inside and potentially different keys in each row. Correctly the `Dataset.from_pandas` function adds `key: None` to all dictionaries in each row so that the schema can be correctly inferred. ### Steps to reproduce the bug Steps to reproduce: - Upgrade to datasets==2.6.1 - Create a dataset from pandas dataframe with `Dataset.from_pandas` - Create a dataset_dict from a dict of `Dataset`s, e.g., `DatasetDict({"train": train_ds, "validation": val_ds}) - Save to disk with the `save` function ### Expected behavior Same as in v2.5.2, that is load from disk without errors ### Environment info - `datasets` version: 2.6.1 - Platform: Linux-5.4.209-129.367.amzn2int.x86_64-x86_64-with-glibc2.26 - Python version: 3.9.13 - PyArrow version: 9.0.0 - Pandas version: 1.5.1
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1,420,415,639
PR_kwDODunzps5BZJab
5,149
Make iter_files deterministic
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-24T08:16:27
2022-10-27T09:53:23
2022-10-27T09:51:09
MEMBER
null
Fix #5145.
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5,148
Cannot find the rvl_cdip dataset
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[ "Hi, @santule.\r\n\r\nWe have transferred all dataset scripts from GitHub to the Hugging Face Hub: https://huggingface.co/datasets\r\n- Concretely, you have \"rvl_cdip\" here: https://huggingface.co/datasets/rvl_cdip\r\n\r\nTo be able to load them, you should update your `datasets` library:\r\n```\r\npip install -U datasets\r\n```", "thank you, it worked" ]
2022-10-24T04:57:42
2022-10-24T12:23:47
2022-10-24T06:25:28
NONE
null
Hi, I am trying to use load_dataset to load the official "rvl_cdip" dataset but getting an error. dataset = load_dataset("rvl_cdip") Couldn't find 'rvl_cdip' on the Hugging Face Hub either: FileNotFoundError: Couldn't find the file at https://raw.githubusercontent.com/huggingface/datasets/master/datasets/rvl_cdip/rvl_cdip.py Regards,
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5,147
Allow ignoring kwargs inside fn_kwargs during dataset.map's fingerprinting
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[ "Hi ! In the `transformers` issue the object to not hash is a `Pool` - I think you can instantiate it inside your function instead of passing it as a parameter. It's good practice that your function and all its fn_kwargs are picklable, in case you want to parallelize `map` using `num_proc>1`\r\n\r\nFor the other case `def fn(example, verbose=False):` however, I agree it would be nice to let the user specify that \"verbose\" needs to be ignored.\r\n\r\nDo you think providing a decorator could help ? Maybe\r\n```python\r\[email protected](ignore_kwargs=[\"verbose\"])\r\ndef func(example, verbose=False):\r\n ...\r\n```", "Hi @lhoestq! Thanks for your response.\r\n\r\nA `Pool` shouldn't be instantiated within the function, because there's a huge overhead in doing so. The main idea is that the same `Pool` should be used across all function calls. Parallel `map` is not helpful/desired in that specific scenario, because the heavy parallel computation is done by another lib (`pyctcdecode`, called within `transformer`'s model inference code).\r\n\r\nBut yes, it makes sense to be able to leverage parallel processing by just doing `num_proc>1` when possible.\r\n\r\nYour decorator suggestions seems like a pretty clean API to me. I didn't find a `datasets.hashing` module though. Would it be created for this specific purpose? Any downsides in just using `datasets.fingerprint`?\r\n\r\nAnd would `datasets.hashing.register` just add some metadata to `func` in your approach (so it could be inspected from `fingerprint_transform`)?\r\n\r\nAnd looking to the `datasets.Dataset` API, `.filter` would also benefited from this.", "> Would it be created for this specific purpose? Any downsides in just using datasets.fingerprint?\r\n\r\nThis can also go in datasets.fingerprint indeed - but maybe datasets.hashing tells more about what the register function does (i.e. register this function to have a custom hashing) ?\r\n\r\n> And would datasets.hashing.register just add some metadata to func in your approach (so it could be inspected from fingerprint_transform)?\r\n\r\nYup that's the idea :)\r\n\r\n> And looking to the datasets.Dataset API, .filter would also benefited from this.\r\n\r\nIndeed !\r\n\r\n-----\r\n\r\nIf you would like to contribute this you can assign yourself to this issue by posting #self-assign\r\nAnd of course if you have questions or if I can help, feel free to ping me !", "> This can also go in datasets.fingerprint indeed - but maybe datasets.hashing tells more about what the register function does (i.e. register this function to have a custom hashing) ?\r\n\r\nSure, it makes sense.\r\n\r\n---\r\n\r\nI don't plan to work on it right now, so I'll let it unassigned in case somebody wants to join. I'll get back at it as soon as possible though.\r\n" ]
2022-10-22T21:46:38
2022-11-01T22:19:07
null
NONE
null
### Feature request `dataset.map` accepts a `fn_kwargs` that is passed to `fn`. Currently, the whole `fn_kwargs` is used by `fingerprint_transform` to calculate the new fingerprint. I'd like to be able to inform `fingerprint_transform` which `fn_kwargs` shoud/shouldn't be taken into account during hashing. Of course, users should be aware to properly use this new feature, just like the internal usages of `fingerprint_transform` [does](https://github.com/huggingface/datasets/blob/2699593b33ee63d17aad2a2bfddedd38a8df57b8/src/datasets/arrow_dataset.py#L2700). ### Motivation This is originally motivated by https://github.com/huggingface/transformers/pull/18351#issuecomment-1263588680. Nonetheless, consider a more general processing function that accepts a kwarg that does not influence it's output: ```python def fn(example, verbose=False): ... ``` Then `dataset.map(fn, verbose=True)` would not benefit from dataset caching. I'm not sure if other methods in the `Dataset` API could benefit from this feature. ### Your contribution Based on `fingerprint_transform `'s `wrapper` function [here](https://github.com/huggingface/datasets/blob/c59cc34fcd2a369d27b77cc678017f5976a926a9/src/datasets/fingerprint.py#L443), it seems to me that it should be possible to make `.map`/`._map_single` accept something like `fn_use_fingerprint_kwargs`/`fn_ignore_fingerprint_kwargs` (probably another arg name). This would then be used by `fingerprint_transform.wrapper` to better/more flexibly hash the transformation. I could contribute with a PR if this feature and approach look good to you.
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Delete duplicate issue template file
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-21T13:18:46
2022-10-21T13:52:30
2022-10-21T13:50:04
MEMBER
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A conflict between two PRs: - #5116 - #5136 was not properly resolved, resulting in a duplicate issue template. This PR removes the duplicate template.
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Dataset order is not deterministic with ZIP archives and `iter_files`
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null
[ "Thanks for reporting ! The issue doesn't come from shuffling, but from `beans` row order not being deterministic:\r\n\r\nhttps://huggingface.co/datasets/beans/blob/main/beans.py uses `dl_manager.iter_files` on ZIP archives and the file order doesn't seen to be deterministic and changes across machines", "Thank you for noticing indeed!", "This is still a bug, so I'd keep this one open if you don't mind ;)", "Besides the linked PR, to make the loading process fully deterministic, I believe we should also sort the data files [here](https://github.com/huggingface/datasets/blob/df4bdd365f2abb695f113cbf8856a925bc70901b/src/datasets/data_files.py#L276) and [here](https://github.com/huggingface/datasets/blob/df4bdd365f2abb695f113cbf8856a925bc70901b/src/datasets/data_files.py#L485) (e.g. fsspec's `LocalFileSystem.glob` relies on `os.scandir`, which yields the contents in arbitrary order). My concern is the overhead of these sorts... Maybe we could introduce a new flag to `load_dataset` similar to TFDS' [`shuffle_files`](https://www.tensorflow.org/datasets/determinism#determinism_when_reading) or sort only if the number of data files is small?", "We already return the result sorted at the end of `_resolve_single_pattern_locally` and `_resolve_single_pattern_in_dataset_repository` if I'm not mistaken", "@lhoestq Oh, you are right. Feel free to ignore my comment.", "I think the corresponding PR is ready to be merged :hugs: ", "@albertvillanova Thanks for the fix!" ]
2022-10-21T09:00:03
2022-10-27T09:51:49
2022-10-27T09:51:10
CONTRIBUTOR
null
### Describe the bug For the `beans` dataset (did not try on other), the order of samples is not the same on different machines. Tested on my local laptop, github actions machine, and ec2 instance. The three yield a different order. ### Steps to reproduce the bug In a clean docker container or conda environment with datasets==2.6.1, run ```python from datasets import load_dataset from pprint import pprint data = load_dataset("beans", split="validation") pprint(data["image_file_path"]) ``` ### Expected behavior The order of the images is the same on all machines. ### Environment info On the EC2 instance: ``` - `datasets` version: 2.6.1 - Platform: Linux-4.14.291-218.527.amzn2.x86_64-x86_64-with-glibc2.2.5 - Python version: 3.7.10 - PyArrow version: 9.0.0 - Pandas version: 1.3.5 - Numpy version: not checked ``` On my local laptop: ``` - `datasets` version: 2.6.1 - Platform: Linux-5.15.0-50-generic-x86_64-with-glibc2.35 - Python version: 3.9.12 - PyArrow version: 7.0.0 - Pandas version: 1.3.5 - Numpy version: 1.23.1 ``` On github actions: ``` - `datasets` version: 2.6.1 - Platform: Linux-5.15.0-1022-azure-x86_64-with-glibc2.2.5 - Python version: 3.8.14 - PyArrow version: 9.0.0 - Pandas version: 1.5.1 - Numpy version: 1.23.4 ```
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I_kwDODunzps5UhJPL
5,144
Inconsistent documentation on map remove_columns
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[ "Thanks for reporting, @zhaowei-wang-nlp.\r\n\r\nYou are right, the documentation is confusing on the behavior of `remove_columns`. We should better explain it. ", "This is a duplicate of https://github.com/huggingface/datasets/issues/2343.", "I'm closing this issue because as @mariosasko pointed out, it is a duplicate of:\r\n- #2343" ]
2022-10-21T08:37:53
2022-11-15T14:15:10
2022-11-15T14:15:10
NONE
null
### Describe the bug The page [process](https://huggingface.co/docs/datasets/process) says this about the parameter `remove_columns` of the function `map`: When you remove a column, it is only removed after the example has been provided to the mapped function. So it seems that the `remove_columns` parameter removes after the mapped functions. However, another page, [the documentation of the function map](https://huggingface.co/docs/datasets/v2.6.1/en/package_reference/main_classes#datasets.Dataset.map.remove_columns) says: Columns will be removed before updating the examples with the output of `function`, i.e. if `function` is adding columns with names in remove_columns, these columns will be kept. So one page says "after the mapped function" and another says "before the mapped function." Is there something wrong? ### Steps to reproduce the bug Not about code. ### Expected behavior consistent about the descriptions of the behavior of the parameter `remove_columns` in the function `map`. ### Environment info datasets V2.6.0
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1,416,837,186
I_kwDODunzps5UczhC
5,143
DownloadManager Git LFS support
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[ "Hey ! Actually it works, just pass the right URL ;)\r\nThe URL must be the one with “/resolve/”\r\n\r\ne.g. https://huggingface.co/datasets/imagenet-1k/resolve/main/data/test_images.tar.gz\r\n\r\nYou can even pass a relative path to the dl_manager instead, like `dl_manager.download(\"data/test_images.tar.gz\")`", "Amazing it works, thanks!" ]
2022-10-20T15:29:29
2022-10-20T17:17:10
2022-10-20T17:17:10
CONTRIBUTOR
null
### Feature request Maybe I'm mistaken but the `DownloadManager` does not support extracting git lfs files out of the box right? Using `dl_manager.download()` or `dl_manager.download_and_extract()` still returns lfs files afaict. Is there a good way to write a dataset loading script for a repo with lfs files? ### Motivation / ### Your contribution /
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5,142
Deprecate num_proc parameter in DownloadManager.extract
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[ "_The documentation is not available anymore as the PR was closed or merged._", "Hey @mariosasko . Can you please help me with why the tests keep failing. I have reviewed the code changes multiple times but can't spot any mistakes. ", "You can fix this failure by formatting your code with the `make style` command (run it from the root of the cloned repo).", "hey @mariosasko ,i cant understand how to use the `make style` command .I searched for it on the internet but cant find any results. \r\nSo i formatted the code using vs-code document formatter. Hope this helps.", "`make style` runs the \"style\" target defined here: https://github.com/huggingface/datasets/blob/f09f781be3278156ce3aa6ec90c1926b1846a78f/Makefile#L12\r\n\r\nThis seems to be a good tutorial on Makefiles: https://opensource.com/article/18/8/what-how-makefile", "\r\n\r\n\r\n\r\n> `make style` runs the \"style\" target defined here:\r\n> \r\n> https://github.com/huggingface/datasets/blob/f09f781be3278156ce3aa6ec90c1926b1846a78f/Makefile#L12\r\n> \r\n> This seems to be a good tutorial on Makefiles: https://opensource.com/article/18/8/what-how-makefile\r\n\r\nThanks! I will look into this :relaxed: " ]
2022-10-20T09:52:52
2022-10-25T18:06:56
2022-10-25T15:56:45
CONTRIBUTOR
null
fixes #5132 : Deprecated the `num_proc` parameter in `DownloadManager.extract` by passing `num_proc` parameter to `map_nested` .
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5,141
Raise ImportError instead of OSError
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[ "_The documentation is not available anymore as the PR was closed or merged._", "Thanks @mariosasko ,i commited the changes as you said.\r\n\r\n" ]
2022-10-19T19:30:05
2022-10-25T15:59:25
2022-10-25T15:56:58
CONTRIBUTOR
null
fixes #5134 : Replaced OSError with ImportError if required extraction library is not installed.
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5,140
Make the KeyHasher FIPS compliant
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2022-10-19T14:25:52
2022-11-07T16:20:43
2022-11-07T16:20:43
NONE
null
MD5 is not FIPS compliant thus I am proposing this minimal change to make datasets package FIPS compliant
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Align task tags in dataset metadata
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[ "I removed all the invalid task_ids in datasts without namespace, based on the <s>(internal)</s> types.ts", "(Types.ts is not internal it's public)", "I have opened PRs to fix the task_ids in all datasets within a namespace as well.\r\n\r\nWorking on task_categories...", "For future reference: this fix had some complications\r\n\r\nWhen trying to open a PR to fix the task tags, an exception was thrown if:\r\n- the metadata contained \"languages\" or \"licenses\" (instead of \"language\" or \"license\")\r\n- the metadata contained a non-valid language: `en-US` (instead of `en`), `no` (instead of `'no'`),...\r\n- the metadata contained a non-valid license\r\n- either `task_categories` or `task_ids` was not an array (a dict for each config)\r\n- the metadata contained non-valid tag names\r\n\r\nErrors:\r\n```\r\nValueError: - Error: \"languages\" is deprecated. Use \"language\" instead.\r\n```\r\n```\r\nValueError: - Error: \"licenses\" is deprecated. Use \"license\" instead.\r\n```\r\n```\r\nValueError: - Error: \"language[17]\" must only contain lowercase characters\r\n```\r\n```\r\nValueError: - Error: \"language[0]\" with value \"cz, de, it\" is not valid. It must be an ISO 639-1, 639-2 or 639-3 code (two/three letters), or a special value like \"code\", \"multilingual\". If you want to use BCP-47 identifiers, you can specify them in language_bcp47.\r\n```\r\n```\r\nValueError: - Error: \"task_ids\" must be an array\r\n```", "All Hub datasets are done.", "great job! did you have feedback from Hub users/i.E. repo authors?", "Yes, @julien-c. These are some of the feedbacks:\r\n- Most people just thank for the fix: [cahya/librivox-indonesia](https://huggingface.co/datasets/cahya/librivox-indonesia/discussions/1#6357cd8a292a050ebd705f84), [TurkuNLP/xlsum-fi](https://huggingface.co/datasets/TurkuNLP/xlsum-fi/discussions/1#6357828aa1f8ad1c31bcbe46), [coastalcph/fairlex](https://huggingface.co/datasets/coastalcph/fairlex/discussions/4#6351a527a8e595171ab1aef2)\r\n- Why are we changing their task names? [joelito/lextreme](https://huggingface.co/datasets/joelito/lextreme/discussions/1#6351b576fe367c0d9b12041b)\r\n - I take note of this for the next bulk operation; besides the PR title, we should also add a description to explain the reason for the change and also maybe putting a link to some pertinent GH Issue page\r\n- Some of them ask where to find the list of the supported task values is: [dennlinger/klexikon](https://huggingface.co/datasets/dennlinger/klexikon/discussions/3#6356b3ea80f8cb3ab777ac5c), [lmqg/qg_jaquad](https://huggingface.co/datasets/lmqg/qg_jaquad/discussions/1#635262467e4cc3135fd09f58)\r\n - Currently, the list is here: https://github.com/huggingface/hub-docs/blob/main/js/src/lib/interfaces/Types.ts#L85\r\n - Maybe we could made them more easily accessible\r\n- Some people do not agree about current \"hierarchy\":\r\n - text-scoring: [emrecan/nli_tr_for_simcse](https://huggingface.co/datasets/emrecan/nli_tr_for_simcse/discussions/1#6357c1b128792d8cdd51e9f9) (but referring to [emrecan/nli_tr_for_simcse](https://huggingface.co/datasets/emrecan/nli_tr_for_simcse/discussions/2/files))\r\n - Before \"text-scoring\" was a task_category, with task_ids [\"semantic-similarity-scoring\", \"sentiment-scoring\"]\r\n - Now all three are task_ids [\"text-scoring\", \"semantic-similarity-scoring\", \"sentiment-scoring\"] under the task_category \"text-classification\"\r\n - People complain that their scoring tasks are not classification task\r\n - binary-classification: why don't we have binary-classification? We have multi-class-classification, multi-label-classification and sentiment-classification, but not binary-classification\r\n - symbolic-regression: [yoshitomo-matsubara/srsd-feynman_hard](https://huggingface.co/datasets/yoshitomo-matsubara/srsd-feynman_hard/discussions/2#63614194c12a09b8a31457cc), [yoshitomo-matsubara/srsd-feynman_medium](https://huggingface.co/datasets/yoshitomo-matsubara/srsd-feynman_medium/discussions/2#6361418aeee0d27f04379e43), [yoshitomo-matsubara/srsd-feynman_easy](https://huggingface.co/datasets/yoshitomo-matsubara/srsd-feynman_easy/discussions/2#6361416e00905b1ffb8d0112)\r\n - Why don't we have symbolic-regression task?\r\n\r\nNOTE: I'm editing this comment to add more feedback", "As someone with feedback on the updates (which I highly appreciate seeing included here :D), a few comments from a \"user perspective\": \r\n\r\n* I think the general confusion for me was also surrounding the hierarchy; it doesn't really become super clear (even when using the tagger space) that one is a subset of the other, especially since it seems to be still possible to include fine-grained tasks without the \"parent category\"?\r\n* The datasets explorer still shows tags that are no longer valid (e.g., super specific ones such as `summarization-other-paper-abstract-generation`, but also ones that should be `task_categories`, such as `summarization`). I'm assuming this will be fixed soon, but until then it can confuse people who don't understand why they suddenly can't use seemingly still valid tags anymore.\r\n* As I mentioned to @albertvillanova, having a dedicated page in the docs with explanations (especially wrt the difference between `task_categories` and `task_ids`) would be super helpful. However, I think it would have been sufficient to just include some description in the dataset PRs where you can link to the Github/other discussion on the topic :) That way, I can check myself what changes are expected to happen.\r\n\r\nThanks again for the streamlining process, I personally learned a fair bit about the tagging structure in the meantime!\r\nBest,\r\nDennis", "Thanks to you both for your feedback! super useful! cc'ing @osanseviero too 🙂\r\n\r\n> The datasets explorer still shows tags that are no longer valid\r\n\r\nwait which explorer is that? is it https://huggingface.co/datasets/viewer/ ?\r\n", "Sorry, this one: https://huggingface.co/datasets \r\nAnd then selecting the \"Fine-Grained Tasks\".", "good feedback! we'll improve this", "Super useful feedback, thanks a lot!", "- Some people do not agree about current \"hierarchy\":\r\n - symbolic-regression: [yoshitomo-matsubara/srsd-feynman_hard](https://huggingface.co/datasets/yoshitomo-matsubara/srsd-feynman_hard/discussions/2#63614194c12a09b8a31457cc), [yoshitomo-matsubara/srsd-feynman_medium](https://huggingface.co/datasets/yoshitomo-matsubara/srsd-feynman_medium/discussions/2#6361418aeee0d27f04379e43), [yoshitomo-matsubara/srsd-feynman_easy](https://huggingface.co/datasets/yoshitomo-matsubara/srsd-feynman_easy/discussions/2#6361416e00905b1ffb8d0112)\r\n - Why don't we have symbolic-regression task?", "@albertvillanova \r\nThank you for sharing our voice here!\r\n\r\nYes, we want `symbolic-regression` to be listed as a task. This task has been attracting attention from the machine learning/deep learning community, and unfortunately existing symbolic regression datasets are de-centralized in the community (hosted at individual platforms like author website, github, etc).\r\nIt would be great for the community if Hugging Face can support the task." ]
2022-10-19T09:41:42
2022-11-10T05:25:58
2022-10-25T06:17:00
MEMBER
null
## Describe Once we have agreed on a common naming for task tags for all open source projects, we should align on them. ## Steps - [x] Align task tags in canonical datasets - [x] task_categories: 4 datasets - [x] task_ids (by @lhoestq) - [x] Open PRs in community datasets - [x] task_categories: 451 datasets - [x] task_ids: 556 datasets
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5,136
Update docs once dataset scripts transferred to the Hub
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-19T07:58:27
2022-10-20T08:12:21
2022-10-20T08:10:00
MEMBER
null
Todo: - [x] Update docs: - [x] Datasets on GitHub (legacy) - [x] Load: offline - [x] About dataset load: - [x] Maintaining integrity - [x] Security - [x] Update docstrings: - [x] Inspect: - [x] get_dataset_config_info - [x] get_dataset_split_names - [x] Load: - [x] dataset_module_factory - [x] load_dataset_builder - [x] load_dataset - [x] Remove `ADD_NEW_DATASET.md` - [x] Update `.github/ISSUE_TEMPLATE/config.yml` Fix #5135.
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Update docs once dataset scripts transferred to the Hub
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2022-10-19T06:58:19
2022-10-20T08:10:01
2022-10-20T08:10:01
MEMBER
null
## Describe the bug As discussed in: - https://github.com/huggingface/hub-docs/pull/423#pullrequestreview-1146083701 we should update our docs once dataset scripts have been transferred to the Hub (and removed from GitHub): - #4974 Concretely: - [x] Datasets on GitHub (legacy): https://huggingface.co/docs/datasets/main/en/share#datasets-on-github-legacy - [x] ADD_NEW_DATASET: https://github.com/huggingface/datasets/blob/main/ADD_NEW_DATASET.md - ... This PR complements the work of: - #5067 This PR is a follow-up of PRs: - #3777 CC: @julien-c
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5,134
Raise ImportError instead of OSError if required extraction library is not installed
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null
[ "hey ,i would like to work on this issue . Please assign it to me.", "hey @mariosasko , i made a pr for this issue. Could you please review it.\r\nAlso i found multiple `OSError` in `extract.py` file which i thought could be replaced too but wasn't sure about them.\r\nPlease do tell if that also needs to be done." ]
2022-10-18T17:53:46
2022-10-25T15:56:59
2022-10-25T15:56:59
CONTRIBUTOR
null
According to the official Python docs, `OSError` should be thrown in the following situations: > This exception is raised when a system function returns a system-related error, including I/O failures such as “file not found” or “disk full” (not for illegal argument types or other incidental errors). Hence, it makes more sense to raise `ImportError` instead of `OSError` when the required extraction/decompression library is not installed.
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I_kwDODunzps5UQi6m
5,133
Tensor operation not functioning in dataset mapping
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[ "Hi! The Torch ops in your snippet are not equivalent to the NumPy ones, hence the difference. You can get the same behavior by replacing the line `feature = torch.mean(feature, dim=1)` with `feature = feature.squeeze().mean(1)` .", "> Hi! The Torch ops in your snippet are not equivalent to the NumPy ones, hence the difference. You can get the same behavior by replacing the line `feature = torch.mean(feature, dim=1)` with `feature = feature.squeeze().mean(1)` .\r\n\r\nThank you. " ]
2022-10-18T17:53:35
2022-10-19T04:15:45
2022-10-19T04:15:44
NONE
null
## Describe the bug I'm doing a torch.mean() operation in data preprocessing, and it's not working. ## Steps to reproduce the bug ``` from transformers import pipeline import torch import numpy as np from datasets import load_dataset device = 'cuda:0' raw_dataset = load_dataset("glue", "sst2") feature_extraction = pipeline('feature-extraction', 'bert-base-uncased', device=device) def extracted_data(examples): # feature = torch.tensor(feature_extraction(examples['sentence'], batch_size=16), device=device) # feature = torch.mean(feature, dim=1) feature = np.asarray(feature_extraction(examples['sentence'], batch_size=16)).squeeze().mean(1) print(feature.shape) return {'feature': feature} extracted_dataset = raw_dataset.map(extracted_data, batched=True, batch_size=16) ``` ## Results When running with torch.mean(), the shape printed out is [16, seq_len, 768], which is exactly the same before the operation. While numpy works just fine, which gives [16, 768]. ## Environment info - `datasets` version: 2.6.1 - Platform: Linux-4.4.0-142-generic-x86_64-with-glibc2.31 - Python version: 3.10.6 - PyArrow version: 9.0.0 - Pandas version: 1.5.0
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1,413,607,306
I_kwDODunzps5UQe-K
5,132
Depracate `num_proc` parameter in `DownloadManager.extract`
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[ "I can take this! #self-assign", "#self-assign", "@lazarust i'm already working on this issue :smile: ", "#self-assign", "hey @mariosasko , i made a pr for this issue. Could you please review it." ]
2022-10-18T17:41:05
2022-10-25T15:56:46
2022-10-25T15:56:46
CONTRIBUTOR
null
The `num_proc` parameter is only present in `DownloadManager.extract` but not in `StreamingDownloadManager.extract`, making it impossible to support streaming in the dataset scripts that use it (`openwebtext` and `the_pile_stack_exchange`). We can avoid this situation by deprecating this parameter and passing `DownloadConfig`'s `num_proc` to `map_nested` instead, as it's done in `DownloadManager.download`.
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5,131
WikiText 103 tokenizer hangs
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2022-10-18T16:44:00
2023-07-21T14:41:51
2023-07-21T14:41:51
NONE
null
See issue here: https://github.com/huggingface/transformers/issues/19702
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5,130
Avoid extra cast in `class_encode_column`
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-18T15:31:24
2022-10-19T11:53:02
2022-10-19T11:50:46
CONTRIBUTOR
null
Pass the updated features to `map` to avoid the `cast` in `class_encode_column`.
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5,129
unexpected `cast` or `class_encode_column` result after `rename_column`
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[ "Hi! Unfortunately, I can't reproduce this issue locally (in Python 3.7/3.10) or in Colab. I would assume this is due to a bug we fixed in the latest release, but your version is up-to-date, so I'm not sure if there is something we can do to help...", "Hi, 方子东. I tried running the code with exact the same configuration (both datasets 2.5.2 and 2.6.1, python, pyarrow, pandas), but on Linux. The results seem to be the expected `{<pyarrow.Int64Scalar: 4>, <pyarrow.Int64Scalar: 2>, <pyarrow.Int64Scalar: 3>, <pyarrow.Int64Scalar: 0>, <pyarrow.Int64Scalar: 1>}`.\r\nI don't have a Mac device. I can't verify whether this is a M1 chip-specific problem.", "I've just tested the code on my M1 Mac, and it behaves as expected.", "> Hi! Unfortunately, I can't reproduce this issue locally (in Python 3.7/3.10) or in Colab. I would assume this is due to a bug we fixed in the latest release, but your version is up-to-date, so I'm not sure if there is something we can do to help...\r\n\r\nThank you for your attention and feel sorry to take your time. Since this is a bug of old version, I think mybe my problem is because `cast` operation directaly used cached data generated by older verion of `datasets`. I tried to deleted the cached data and I got expected result.\r\n" ]
2022-10-18T11:15:24
2022-10-19T03:02:26
2022-10-19T03:02:26
NONE
null
## Describe the bug When invoke `cast` or `class_encode_column` to a colunm renamed by `rename_column` , it will convert all the variables in this column into one variable. I also run this script in version 2.5.2, this bug does not appear. So I switched to the older version. ## Steps to reproduce the bug ```python from datasets import load_dataset dataset = load_dataset("amazon_reviews_multi", "en") data = dataset['train'] data = data.remove_columns( [ "review_id", "product_id", "reviewer_id", "review_title", "language", "product_category", ] ) data = data.rename_column("review_body", "text") data1 = data.class_encode_column("stars") print(set(data1.data.columns[0])) # output: {<pyarrow.Int64Scalar: 4>, <pyarrow.Int64Scalar: 2>, <pyarrow.Int64Scalar: 3>, <pyarrow.Int64Scalar: 0>, <pyarrow.Int64Scalar: 1>} data = data.rename_column("stars", "label") print(set(data.data.columns[0])) # output: {<pyarrow.Int32Scalar: 5>, <pyarrow.Int32Scalar: 4>, <pyarrow.Int32Scalar: 1>, <pyarrow.Int32Scalar: 3>, <pyarrow.Int32Scalar: 2>} data2 = data.class_encode_column("label") print(set(data2.data.columns[0])) # output: {<pyarrow.Int64Scalar: 0>} ``` ## Expected results the last print should be: {<pyarrow.Int64Scalar: 4>, <pyarrow.Int64Scalar: 2>, <pyarrow.Int64Scalar: 3>, <pyarrow.Int64Scalar: 0>, <pyarrow.Int64Scalar: 1>} ## Actual results but it output: {<pyarrow.Int64Scalar: 0>} ## Environment info - `datasets` version: 2.6.1 - Platform: macOS-12.5.1-arm64-arm-64bit - Python version: 3.10.6 - PyArrow version: 9.0.0 - Pandas version: 1.5.0
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5,128
Make filename matching more robust
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[ "_The documentation is not available anymore as the PR was closed or merged._", "> I think we should also modify one of the metadata files in the `folder_based_builder` tests to make sure \"./\" is ignored now in the `file_name`\r\n\r\n@mariosasko what do you mean here? I'm not sure which metadata file I should modify here", "You can modify this line for instance: https://github.com/huggingface/datasets/blob/2699593b33ee63d17aad2a2bfddedd38a8df57b8/tests/packaged_modules/test_folder_based_builder.py#L135" ]
2022-10-18T08:22:48
2022-10-28T13:07:38
2022-10-28T13:05:06
CONTRIBUTOR
null
Fix #5046
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5,127
[WIP] WebDataset export
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5127). All of your documentation changes will be reflected on that endpoint." ]
2022-10-17T16:50:22
2023-02-22T09:51:10
null
MEMBER
null
I added a first draft of the `IterableDataset.to_wds` method. You can use it to savea dataset loaded in streamign mode as a webdataset locally. The API can be further improved to allow to export to a cloud storage like the HF Hub. I also included sharding with a default max shard size of 500MB (uncompressed), and it is single-processed fo rnow. Choosing the number of shards is not implemented yet - though if we know the size of the `IterableDataset` this is probably doable`. For example ```python >>> from datasets import load_dataset >>> ds = load_dataset("rotten_tomatoes", split="train", streaming=True) >>> ds.to_wds("output_dir", compress=True) >>> import webdataset as wds >>> ds = wds.WebDataset("output_dir/rotten_tomatoes-train-000000.tar.gz").decode() >>> next(iter(ds)) {'__key__': '0', '__url__': 'output_dir/rotten_tomatoes-train-000000.tar.gz', 'label.cls': 1, 'text.txt': 'the rock is destined to be the 21st century\'s new ..., jean-claud van damme or steven segal .'} ``` ### Implementation details The WebDataset format is made of TAR archives containing a series of files per example. For example one pair of `image.jpg` and `label.cls` for image classification. WebDataset automatically decodes serialized data based on the extension of the files, and output a dictionary. For example `{"image.png": np.array(...), "label.cls": 0}` if you choose the numpy decoding. To use the automatic decoding, I store each field of each example as a file with its corresponding extension (jpg, json, cls, etc.) While this is useful to end up with a dictionary with one key per column and appropriate decoding, it can create huge TAR archives if the dataset is made of small samples of text - probably because of useless TAR metadata for each file. This also makes loading super slow: iterating on SQuAD takes 50sec vs 7sec using `datasets` in streaming mode. I haven't taken a look at alternatives for text datasets made out of small samples, but for image datasets this can already be used to run some benchmarks.
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1,411,757,124
PR_kwDODunzps5A8Iw3
5,126
Fix class name of symbolic link
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[ "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5126). All of your documentation changes will be reflected on that endpoint.", "I have removed the reference to the Issue in the PR title, so that we avoid to have both references (to the issue and to the PR) in the merge commit to the main branch.\r\n\r\nInstead, it should be commented in the PR description, so that the PR is appropriately linked by GitHub to its corresponding Issue:\r\n\r\n> Fix #5098.", "@albertvillanova What should I test in your opinion? Also, where should I save the test file and how should I name it? Thanks for your support", "The regression test to be implemented should test what your PR fixes: that is, that `_resolve_single_pattern_locally` function does not resolve any symbolic link when passed a directory that does contain any.\r\n\r\nAs you are testing a function in `data_files.py`, the corresponding test should be in `tests/test_data_files.py`.\r\n\r\nYou could name the test something lilke: `test_resolve_single_pattern_locally_does_not_resolve_symbolic_links`\r\n\r\nYou could take inspiration from other tests there in that file." ]
2022-10-17T15:11:02
2022-11-14T14:40:18
2022-11-14T14:40:18
CONTRIBUTOR
null
Fix #5098
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1,411,602,813
PR_kwDODunzps5A7nr8
5,125
Add `pyproject.toml` for `black`
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-17T13:38:47
2022-10-17T14:23:27
2022-10-17T14:21:09
CONTRIBUTOR
null
Add `pyproject.toml` as a config file for the `black` tool to support VS Code's auto-formatting on save (and to be more consistent with the other HF projects).
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1,411,159,725
PR_kwDODunzps5A6HeL
5,124
Install tensorflow-macos dependency conditionally
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-17T08:45:08
2022-10-19T09:12:17
2022-10-19T09:10:06
MEMBER
null
Fix #5118.
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1,410,828,756
I_kwDODunzps5UF4nU
5,123
datasets freezes with streaming mode in multiple-gpu
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[ "@lhoestq I tested the script without accelerator, and I confirm this is due to datasets part as this gets similar results without accelerator.", "Hi ! You said it works on 1 GPU but doesn't wortk without accelerator - what's the difference between running on 1 GPU and running without accelerator in your case ?", "Hi @lhoestq \r\nthanks for coming back to me. Sorry for the confusion I made. I meant this works fine on 1 GPU, but on multi-gpu it is freezing. \"accelerator\" is not an issue as if you adapt the code without accelerator this still gets the same issue.\r\nIn order to test it. Please run \"accelerate config\", then use the setup for multi-gpu in one node.\r\nAfter that run \"accelerate launch code.py\" and then you would see the freezing occurs.", "Hi @lhoestq \r\ncould you have the chance to reproduce the error by running the minimal example shared?\r\nthanks", "I think you need to do `train_dataset = train_dataset.with_format(\"torch\")` to work with the DataLoader in a multiprocessing setup :)\r\n\r\nThe hang is probably caused by our streamign lib `fsspec` which doesn't work in multiprocessing out of the box - but we made it work with the PyTorch DataLoader when the dataset format is set to \"torch\"", "Hi @lhoestq \r\nthanks for the response. I added the line suggested right before calling `with accelerator.main_process_first():` in the code above and I confirm this also freezes. to reproduce it please run \"accelerate launch code.py\". I was wondering if you could have more suggestions for me? I do not have an idea how to fix this or debug this freezing. many thanks.", "Maybe the `fsspec` stuff need to be clearer even before - can you try to run this function at the very beginning of your script ?\r\n```python\r\nimport fsspec\r\n\r\ndef _set_fsspec_for_multiprocess() -> None:\r\n \"\"\"\r\n Clear reference to the loop and thread.\r\n This is necessary otherwise HTTPFileSystem hangs in the ML training loop.\r\n Only required for fsspec >= 0.9.0\r\n See https://github.com/fsspec/gcsfs/issues/379\r\n \"\"\"\r\n fsspec.asyn.iothread[0] = None\r\n fsspec.asyn.loop[0] = None\r\n\r\n_set_fsspec_for_multiprocess()\r\n```", "Hi @lhoestq \r\nthank you. I tried it, I am getting `AttributeError: module 'fsspec' has no attribute 'asyn'`. which version of fsspect do you use?\r\nI am using \r\n```fsspec 2022.8.2 pypi_0 pypi```\r\nthank you.", "Hi @lhoestq \r\nI solved `fsspec` error with this hack for now https://discuss.huggingface.co/t/attributeerror-module-fsspec-has-no-attribute-asyn/19255 but this is still freezing, I greatly appreciate if you could run this script on your side. Many thanks.\r\n\r\n```\r\nimport fsspec\r\n\r\ndef _set_fsspec_for_multiprocess() -> None:\r\n \"\"\"\r\n Clear reference to the loop and thread.\r\n This is necessary otherwise HTTPFileSystem hangs in the ML training loop.\r\n Only required for fsspec >= 0.9.0\r\n See https://github.com/fsspec/gcsfs/issues/379\r\n \"\"\"\r\n fsspec.asyn.iothread[0] = None\r\n fsspec.asyn.loop[0] = None\r\n\r\n\r\n_set_fsspec_for_multiprocess()\r\n\r\nfrom accelerate import Accelerator\r\nfrom accelerate.logging import get_logger\r\nfrom datasets import load_dataset\r\nfrom torch.utils.data.dataloader import DataLoader\r\nimport torch\r\nfrom datasets import load_dataset\r\nfrom transformers import AutoTokenizer\r\nimport torch\r\nfrom accelerate.logging import get_logger\r\nfrom torch.utils.data import IterableDataset\r\nfrom torch.utils.data.datapipes.iter.combinatorics import ShufflerIterDataPipe\r\n\r\n\r\nlogger = get_logger(__name__)\r\n\r\n\r\nclass ConstantLengthDataset(IterableDataset):\r\n \"\"\"\r\n Iterable dataset that returns constant length chunks of tokens from stream of text files.\r\n Args:\r\n tokenizer (Tokenizer): The processor used for proccessing the data.\r\n dataset (dataset.Dataset): Dataset with text files.\r\n infinite (bool): If True the iterator is reset after dataset reaches end else stops.\r\n max_seq_length (int): Length of token sequences to return.\r\n num_of_sequences (int): Number of token sequences to keep in buffer.\r\n chars_per_token (int): Number of characters per token used to estimate number of tokens in text buffer.\r\n \"\"\"\r\n\r\n def __init__(\r\n self,\r\n tokenizer,\r\n dataset,\r\n infinite=False,\r\n max_seq_length=1024,\r\n num_of_sequences=1024,\r\n chars_per_token=3.6,\r\n ):\r\n self.tokenizer = tokenizer\r\n # self.concat_token_id = tokenizer.bos_token_id\r\n self.dataset = dataset\r\n self.max_seq_length = max_seq_length\r\n self.epoch = 0\r\n self.infinite = infinite\r\n self.current_size = 0\r\n self.max_buffer_size = max_seq_length * chars_per_token * num_of_sequences\r\n self.content_field = \"text\"\r\n\r\n def __iter__(self):\r\n iterator = iter(self.dataset)\r\n more_examples = True\r\n while more_examples:\r\n buffer, buffer_len = [], 0\r\n while True:\r\n if buffer_len >= self.max_buffer_size:\r\n break\r\n try:\r\n buffer.append(next(iterator)[self.content_field])\r\n buffer_len += len(buffer[-1])\r\n except StopIteration:\r\n if self.infinite:\r\n iterator = iter(self.dataset)\r\n self.epoch += 1\r\n logger.info(f\"Dataset epoch: {self.epoch}\")\r\n else:\r\n more_examples = False\r\n break\r\n tokenized_inputs = self.tokenizer(buffer, truncation=False)[\"input_ids\"]\r\n all_token_ids = []\r\n for tokenized_input in tokenized_inputs:\r\n all_token_ids.extend(tokenized_input)\r\n for i in range(0, len(all_token_ids), self.max_seq_length):\r\n input_ids = all_token_ids[i : i + self.max_seq_length]\r\n if len(input_ids) == self.max_seq_length:\r\n self.current_size += 1\r\n yield torch.tensor(input_ids)\r\n\r\n def shuffle(self, buffer_size=1000):\r\n return ShufflerIterDataPipe(self, buffer_size=buffer_size)\r\n\r\n\r\ndef create_dataloaders(tokenizer, accelerator):\r\n ds_kwargs = {\"streaming\": True}\r\n # In distributed training, the load_dataset function gaurantees that only one process\r\n # can concurrently download the dataset.\r\n datasets = load_dataset(\r\n \"c4\",\r\n \"en\",\r\n cache_dir=\"cache_dir\",\r\n **ds_kwargs,\r\n )\r\n train_data, valid_data = datasets[\"train\"], datasets[\"validation\"]\r\n with accelerator.main_process_first():\r\n train_data = train_data.shuffle(buffer_size=10000, seed=None)\r\n train_dataset = ConstantLengthDataset(\r\n tokenizer,\r\n train_data,\r\n infinite=True,\r\n max_seq_length=256,\r\n )\r\n valid_dataset = ConstantLengthDataset(\r\n tokenizer,\r\n valid_data,\r\n infinite=False,\r\n max_seq_length=256,\r\n )\r\n train_dataset = train_dataset.shuffle(buffer_size=10000)\r\n train_dataloader = DataLoader(train_dataset, batch_size=160, shuffle=True)\r\n eval_dataloader = DataLoader(valid_dataset, batch_size=160)\r\n return train_dataloader, eval_dataloader\r\n\r\n\r\ndef main():\r\n # Accelerator.\r\n logging_dir = \"data_save_dir/log\"\r\n accelerator = Accelerator(\r\n gradient_accumulation_steps=1,\r\n mixed_precision=\"bf16\",\r\n log_with=\"tensorboard\",\r\n logging_dir=logging_dir,\r\n )\r\n # We need to initialize the trackers we use, and also store our configuration.\r\n # The trackers initializes automatically on the main process.\r\n if accelerator.is_main_process:\r\n accelerator.init_trackers(\"test\")\r\n tokenizer = AutoTokenizer.from_pretrained(\"bert-base-uncased\")\r\n\r\n # Load datasets and create dataloaders.\r\n train_dataloader, _ = create_dataloaders(tokenizer, accelerator)\r\n\r\n train_dataloader = accelerator.prepare(train_dataloader)\r\n for step, batch in enumerate(train_dataloader, start=1):\r\n print(step)\r\n accelerator.end_training()\r\n\r\n\r\nif __name__ == \"__main__\":\r\n main()\r\n```", "Are you using `Pytorch 1.11`? Otherwise the script freezes because of the shuffling in this line: \r\n```\r\n return ShufflerIterDataPipe(self, buffer_size=buffer_size)\r\n```\r\n`ShufflerIterDataPipe` behavior must have changed for newer Pytorch versions. But this doesn't change whether you're using streaming or not in `datasets`, so probably not the same issue, but something to try.", "> Are you using `Pytorch 1.11`? Otherwise the script freezes because of the shuffling in this line:\r\n> \r\n> ```\r\n> return ShufflerIterDataPipe(self, buffer_size=buffer_size)\r\n> ```\r\n> \r\n> `ShufflerIterDataPipe` behavior must have changed for newer Pytorch versions. But this doesn't change whether you're using streaming or not in `datasets`, so probably not the same issue, but something to try.\r\n\r\nI met the same issue for pytorch 1.12 and 1.13, is there a way to work around for this function for newer pytorch versions?" ]
2022-10-17T03:28:16
2023-05-14T06:55:20
null
NONE
null
## Describe the bug Hi. I am using this dataloader, which is for processing large datasets in streaming mode mentioned in one of examples of huggingface. I am using it to read c4: https://github.com/huggingface/transformers/blob/b48ac1a094e572d6076b46a9e4ed3e0ebe978afc/examples/research_projects/codeparrot/scripts/codeparrot_training.py#L22 During using multi-gpu in accelerator in one node, the code freezes, but works for 1 GPU: ``` 10/16/2022 14:18:46 - INFO - datasets.info - Loading Dataset Infos from /home/jack/.cache/huggingface/modules/datasets_modules/datasets/c4/df532b158939272d032cc63ef19cd5b83e9b4d00c922b833e4cb18b2e9869b01 Steps: 0%| | 0/400000 [00:00<?, ?it/s]10/16/2022 14:18:47 - INFO - torch.utils.data.dataloader - Shared seed (135290893754684706) sent to store on rank 0 ``` # Code to reproduce please run this code with `accelerate launch code.py` ``` from accelerate import Accelerator from accelerate.logging import get_logger from datasets import load_dataset from torch.utils.data.dataloader import DataLoader import torch from datasets import load_dataset from transformers import AutoTokenizer import torch from accelerate.logging import get_logger from torch.utils.data import IterableDataset from torch.utils.data.datapipes.iter.combinatorics import ShufflerIterDataPipe logger = get_logger(__name__) class ConstantLengthDataset(IterableDataset): """ Iterable dataset that returns constant length chunks of tokens from stream of text files. Args: tokenizer (Tokenizer): The processor used for proccessing the data. dataset (dataset.Dataset): Dataset with text files. infinite (bool): If True the iterator is reset after dataset reaches end else stops. max_seq_length (int): Length of token sequences to return. num_of_sequences (int): Number of token sequences to keep in buffer. chars_per_token (int): Number of characters per token used to estimate number of tokens in text buffer. """ def __init__( self, tokenizer, dataset, infinite=False, max_seq_length=1024, num_of_sequences=1024, chars_per_token=3.6, ): self.tokenizer = tokenizer # self.concat_token_id = tokenizer.bos_token_id self.dataset = dataset self.max_seq_length = max_seq_length self.epoch = 0 self.infinite = infinite self.current_size = 0 self.max_buffer_size = max_seq_length * chars_per_token * num_of_sequences self.content_field = "text" def __iter__(self): iterator = iter(self.dataset) more_examples = True while more_examples: buffer, buffer_len = [], 0 while True: if buffer_len >= self.max_buffer_size: break try: buffer.append(next(iterator)[self.content_field]) buffer_len += len(buffer[-1]) except StopIteration: if self.infinite: iterator = iter(self.dataset) self.epoch += 1 logger.info(f"Dataset epoch: {self.epoch}") else: more_examples = False break tokenized_inputs = self.tokenizer(buffer, truncation=False)["input_ids"] all_token_ids = [] for tokenized_input in tokenized_inputs: all_token_ids.extend(tokenized_input) for i in range(0, len(all_token_ids), self.max_seq_length): input_ids = all_token_ids[i : i + self.max_seq_length] if len(input_ids) == self.max_seq_length: self.current_size += 1 yield torch.tensor(input_ids) def shuffle(self, buffer_size=1000): return ShufflerIterDataPipe(self, buffer_size=buffer_size) def create_dataloaders(tokenizer, accelerator): ds_kwargs = {"streaming": True} # In distributed training, the load_dataset function gaurantees that only one process # can concurrently download the dataset. datasets = load_dataset( "c4", "en", cache_dir="cache_dir", **ds_kwargs, ) train_data, valid_data = datasets["train"], datasets["validation"] with accelerator.main_process_first(): train_data = train_data.shuffle(buffer_size=10000, seed=None) train_dataset = ConstantLengthDataset( tokenizer, train_data, infinite=True, max_seq_length=256, ) valid_dataset = ConstantLengthDataset( tokenizer, valid_data, infinite=False, max_seq_length=256, ) train_dataset = train_dataset.shuffle(buffer_size=10000) train_dataloader = DataLoader(train_dataset, batch_size=160, shuffle=True) eval_dataloader = DataLoader(valid_dataset, batch_size=160) return train_dataloader, eval_dataloader def main(): # Accelerator. logging_dir = "data_save_dir/log" accelerator = Accelerator( gradient_accumulation_steps=1, mixed_precision="bf16", log_with="tensorboard", logging_dir=logging_dir, ) # We need to initialize the trackers we use, and also store our configuration. # The trackers initializes automatically on the main process. if accelerator.is_main_process: accelerator.init_trackers("test") tokenizer = AutoTokenizer.from_pretrained("bert-base-uncased") # Load datasets and create dataloaders. train_dataloader, _ = create_dataloaders(tokenizer, accelerator) train_dataloader = accelerator.prepare(train_dataloader) for step, batch in enumerate(train_dataloader, start=1): print(step) accelerator.end_training() if __name__ == "__main__": main() ``` ## Results expected Being able to run the code for streamining datasets with multi-gpu ## Environment info <!-- You can run the command `datasets-cli env` and copy-and-paste its output below. --> - `datasets` version: 2.5.2 - Platform: linux - Python version: 3.9.12 - PyArrow version: 9.0.0 @lhoestq I do not have any idea why this freezing happens, and I removed the streaming mode and this was working fine, so I know this is caused by streaming mode of the dataloader part not working well with multi-gpu setting. Since datasets are large, I hope to keep the streamining mode. I very much appreciate your help.
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PR_kwDODunzps5A4rWn
5,122
Add warning
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[ "As mentioned in https://github.com/huggingface/datasets/issues/5105 I think we just need to keep the existing files instead of deleting them.\r\nThe `dataset_info.json` file contains the split names anyway, so we know which files belong to the dataset, and which ones don't." ]
2022-10-17T01:30:37
2022-11-05T12:23:53
2022-11-05T12:23:53
NONE
null
Fixes: #5105 I think removing the directory with warning is a better solution for this issue. Because if we decide to keep existing files in directory, then we should deal with the case providing same directory for several datasets! Which we know is not possible since `dataset_info.json` exists in that directory.
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5,121
Bugfix ignore function when creating new_fingerprint for caching
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[ "Adding \"function\" to the kwargs to ignore when computing the fingerprint will break `map` caching. Indeed passing two different function would result in two different datasets that have the same fingerprint - and the cache wouldn't be able to distinguish them.\r\n\r\nE.g this code would reload ds1 from the cache insetad of computing the dataset for ds2\r\n```python\r\nds = Dataset.from_dict({\"a\": [1, 2, 3]})\r\nds1 = ds.map(lambda x: {\"b\": 1})\r\nds2 = ds.map(lambda x: {\"b\": 2})\r\n```" ]
2022-10-17T00:03:43
2022-10-17T12:39:36
2022-10-17T12:39:36
NONE
null
maybe fixes: #5109
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5,120
Fix `tqdm` zip bug
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[ "@albertvillanova Thanks for your comment. What do you think about creating 2 `pbar` for each case? I see the `pbar_iterable` is initialized differently. Maybe `pbar` can also be initialized like that.", "@albertvillanova Another solution I implemented is to change `pbar_iterable` and add the `zip` to it. I updated the PR with this solution. Let me know what you think.", "_The documentation is not available anymore as the PR was closed or merged._", "@albertvillanova Done :) Let me know what you think.", "@albertvillanova Thanks :) I also don't see an easy way to test this. This was just a problem in the way `tqdm` was used. I'm not sure we should cover it in tests.", "Hi, \r\n\r\nFirst of all, thanks for this PR. \r\nIt's the first time I join a discussion on GitHUB on problem resolution in libraries such as transformers, so I hope I comply to the best practices for an efficient communication...\r\n\r\nI am running `AutoTokenizer.from_pretrained` in a Google Colab notebook for using with BERT base. \r\nI am experiencing issue [5117](https://github.com/huggingface/datasets/issues/5117).\r\n\r\nEach time I run my notebook, I do:\r\n\r\n`! pip install transformers \r\n! pip install datasets \r\n! pip install huggingface_hub`\r\n\r\nAs I understand, the issue has been resolved and the solution merged to the released version of the code?\r\nSo I expect that the bug is resolved in my notebook, however this is not the case.\r\n\r\nDo I get something wrong? \r\nDo I have to implement some change in the source code myself?\r\n\r\nThanks in advance for your help!", "@Cochonaki Hi :) The problem was fixed but there wasn't a release since then. I believe a new release should come out in the upcoming weeks. Maybe someone from the core maintainers can answer that :)\r\n\r\ncc: @albertvillanova ", "Baby Haiti Coffee SE is born\n\nNH watch\n\nOn Sun, Oct 23, 2022 at 02:39 Dudu Lasry ***@***.***> wrote:\n\n> @Cochonaki <https://github.com/Cochonaki> Hi :) The problem was fixed but\n> there wasn't a release since then. I believe a new release should come out\n> in the upcoming weeks. Maybe someone from the core maintainers can answer\n> that :)\n>\n> cc: @albertvillanova <https://github.com/albertvillanova>\n>\n> —\n> Reply to this email directly, view it on GitHub\n> <https://github.com/huggingface/datasets/pull/5120#issuecomment-1288024546>,\n> or unsubscribe\n> <https://github.com/notifications/unsubscribe-auth/AAB4E2NCT7QO7W3PTQGDIKDWETMQ7ANCNFSM6AAAAAARGRBY2M>\n> .\n> You are receiving this because you are subscribed to this thread.Message\n> ID: ***@***.***>\n>\n", "Hi, @Cochonaki.\r\n\r\nAs @david1542 pointed out, we have not made a release since this bug was fixed. We will make one in the following weeks.\r\n\r\nIn the meantime, if you would like to incorporate the bug fix, you can install `datasets` from this repo main branch:\r\n```shell\r\npip install git+https://github.com/huggingface/datasets#egg=datasets\r\n```", "Thanks a lot @albertvillanova and @david1542, it works now!\r\nI am really thankful for your help, that encourages me to participate more in this community.\r\nSee you around!", "Welcome!!! 🤗" ]
2022-10-16T22:19:18
2022-10-23T10:27:53
2022-10-19T08:53:17
CONTRIBUTOR
null
This PR solves #5117, by wrapping the entire `zip` clause in tqdm. For more information, please checkout this Stack Overflow thread: https://stackoverflow.com/questions/41171191/tqdm-progressbar-and-zip-built-in-do-not-work-together
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[TYPO] Update new_dataset_script.py
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-16T17:36:49
2022-10-19T09:48:19
2022-10-19T09:45:59
CONTRIBUTOR
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Installing `datasets` on M1 computers
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[ "Thanks for reporting, @david1542." ]
2022-10-16T16:50:08
2022-10-19T09:10:08
2022-10-19T09:10:08
CONTRIBUTOR
null
## Describe the bug I wanted to install `datasets` dependencies on my M1 (in order to start contributing to the project). However, I got an error regarding `tensorflow`. On M1, `tensorflow-macos` needs to be installed instead. Can we add a conditional requirement, so that `tensorflow-macos` would be installed on M1? ## Steps to reproduce the bug Fresh clone this project (on m1), create a virtualenv and run this: ```python pip install -e ".[dev]" ``` ## Expected results Installation should be smooth, and all the dependencies should be installed on M1. ## Actual results You should receive an error, saying pip couldn't find a version that matches this pattern: ``` tensorflow>=2.3,!=2.6.0,!=2.6.1 ``` ## Environment info <!-- You can run the command `datasets-cli env` and copy-and-paste its output below. --> - `datasets` version: 2.6.2.dev0 - Platform: macOS-12.6-arm64-arm-64bit - Python version: 3.9.6 - PyArrow version: 7.0.0 - Pandas version: 1.5.0
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1,409,571,346
I_kwDODunzps5UBFoS
5,117
Progress bars have color red and never completed to 100%
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null
[ "Hi @echatzikyriakidis, thanks for submitting the issue.\r\nWhich shell are you using exactly? I tried to run the command you sent, but I don't see colors at all 🧐\r\n\r\nI tried from bash and zsh as well.", "Hi @david1542 ,\r\n\r\nI use Google Colab.\r\n", "Got it. I [created a PR](https://github.com/huggingface/datasets/pull/5120) that fixes this issue. Turns out that the wrapping logic for the inner loop was slightly incorrect.", "Thank you!" ]
2022-10-14T16:12:30
2022-10-23T12:58:41
2022-10-23T12:58:41
NONE
null
## Describe the bug Progress bars after transformative operations turn in red and never be completed to 100% ## Steps to reproduce the bug ```python from datasets import load_dataset load_dataset('rotten_tomatoes', split='test').filter(lambda o: True) ``` ## Expected results Progress bar should be 100% and green ## Actual results Progress bar turn in red and never completed to 100% ## Environment info - `datasets` version: 2.6.1 - Platform: Linux-5.10.133+-x86_64-with-Ubuntu-18.04-bionic - Python version: 3.7.14 - PyArrow version: 6.0.1 - Pandas version: 1.3.5
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1,409,549,471
PR_kwDODunzps5A09sk
5,116
Use yaml for issue templates + revamp
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-14T15:53:13
2022-10-19T13:05:49
2022-10-19T13:03:22
CONTRIBUTOR
null
Use YAML instead of markdown (more expressive) for the issue templates. In addition, update their structure/fields to be more aligned with Transformers. PS: also removes the "add_dataset" PR template, as we no longer accept such PRs.
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PR_kwDODunzps5Az9Pm
5,115
Fix iter_batches
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[ "_The documentation is not available anymore as the PR was closed or merged._", "I also ran the code in https://github.com/huggingface/datasets/issues/5111 and it works fine now :)", "This is ready for review :)" ]
2022-10-14T12:06:14
2022-10-14T15:02:15
2022-10-14T14:59:58
MEMBER
null
The `pa.Table.to_reader()` method available in `pyarrow>=8.0.0` may return chunks of size < `max_chunksize`, therefore `iter_batches` can return batches smaller than the `batch_size` specified by the user Therefore batched `map` couldn't always use batches of the right size, e.g. this fails because it runs only on one batch of one element: ```python from datasets import Dataset, concatenate_datasets ds = concatenate_datasets([Dataset.from_dict({"a": [i]}) for i in range(10)]) ds2 = ds.map(lambda _: {}, batched=True) assert list(ds2) == list(ds) ``` This was introduced in https://github.com/huggingface/datasets/pull/5030 Close https://github.com/huggingface/datasets/issues/5111 This will require a patch release along with https://github.com/huggingface/datasets/pull/5113 TODO: - [x] fix tests - [x] add more tests
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I_kwDODunzps5T_z8C
5,114
load_from_disk with remote filesystem fails due to a wrong temporary local folder path
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[ "Hi Hubert! Could you please probably create a publicly available `gs://` dataset link? I think this would be easier for others to directly start to debug.", "What seems to work is to change the line to:\r\n```\r\nfs.download(src_dataset_path, dataset_path.parent.as_posix(), recursive=True)\r\n```" ]
2022-10-14T11:54:53
2022-11-19T07:13:10
null
CONTRIBUTOR
null
## Describe the bug The function load_from_disk fails when using a remote filesystem because of a wrong temporary path generation in the load_from_disk method of arrow_dataset.py: ```python if is_remote_filesystem(fs): src_dataset_path = extract_path_from_uri(dataset_path) dataset_path = Dataset._build_local_temp_path(src_dataset_path) fs.download(src_dataset_path, dataset_path.as_posix(), recursive=True) ``` If _dataset_path_ is `gs://speech/mydataset/train`, then _src_dataset_path_ will be `speech/mydataset/train` and _dataset_path_ will be something like `/var/folders/9s/gf0b/T/tmp6t/speech/mydataset/train` Then, after downloading the **folder** _src_dataset_path_, you will get a path like `/var/folders/9s/gf0b/T/tmp6t/speech/mydataset/train/train/state.json` (notice we have train twice) Instead of downloading the remote folder we should be downloading all the files in the folder for the path to be right: ```python fs.download(os.path.join(src_dataset_path,*), dataset_path.as_posix(), recursive=True) ``` ## Steps to reproduce the bug ```python fs = gcsfs.GCSFileSystem(**storage_options) dataset = load_from_disk("common_voice_processed") # loading local dataset previously saved locally, works fine dataset.save_to_disk(output_dir, fs=fs) #works fine dataset = load_from_disk(output_dir, fs=fs) # crashes ``` ## Expected results The dataset is loaded ## Actual results FileNotFoundError: [Errno 2] No such file or directory: '/var/folders/9s/gf0b9jz15d517yrf7m3nvlxr0000gn/T/tmp6t5e221_/speech/datasets/tests/common_voice_processed/train/state.json' ## Environment info <!-- You can run the command `datasets-cli env` and copy-and-paste its output below. --> - `datasets` version: datasets-2.6.1.dev0 - Platform: mac os monterey 12.5.1 - Python version: 3.8.13 - PyArrow version:pyarrow==9.0.0
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1,409,207,607
PR_kwDODunzps5Az0Ei
5,113
Fix filter indices when batched
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[ "_The documentation is not available anymore as the PR was closed or merged._", "I think a patch release will be necessary.", "I'm also fixing https://github.com/huggingface/datasets/issues/5111 which will lalso require a patch release" ]
2022-10-14T11:30:03
2022-10-24T06:21:09
2022-10-14T12:11:44
MEMBER
null
This PR fixes a bug introduced by: - #5030 Fix #5112.
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Bug with filtered indices
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[ "The issue is here:\r\nhttps://github.com/huggingface/datasets/blob/3ad9644b9a2e4558dd1d0f1e43c67658674e6228/src/datasets/arrow_dataset.py#L2964", "@PartiallyTyped, @Muennighoff: the issue is fixed.\r\n\r\nWe are planning to make a patch release today.", "Thanks a lot for the swift response! For a brief moment yesterday I thought I had gone insane 🤣On 14 Oct 2022, at 15:44, Albert Villanova del Moral ***@***.***> wrote:\n@PartiallyTyped, @Muennighoff: the issue is fixed.\nWe are planning to make a patch release today.\n\n—Reply to this email directly, view it on GitHub, or unsubscribe.You are receiving this because you were mentioned.Message ID: ***@***.***>" ]
2022-10-14T10:35:47
2022-10-14T13:55:03
2022-10-14T12:11:45
MEMBER
null
## Describe the bug As reported by @PartiallyTyped (and by @Muennighoff): - https://github.com/huggingface/datasets/issues/5111#issuecomment-1278652524 There is an issue with the indices of a filtered dataset. ## Steps to reproduce the bug ```python ds = Dataset.from_dict({"num": [0, 1, 2, 3]}) ds = ds.filter(lambda num: num % 2 == 0, input_columns="num", batch_size=2) assert all(item["num"] % 2 == 0 for item in ds) ``` ## Expected results The indices of the filtered dataset should correspond to the examples with "language" equals to "english". ## Actual results Indices to items with other languages are included in the filtered dataset indices ## Preliminar investigation It seems a bug introduced by: - #5030
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5,111
map and filter not working properly in multiprocessing with the new release 2.6.0
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[ "Same bug exists with `num_proc=1` on colab. `3.7.14 (default, Sep 8 2022, 00:06:44) [GCC 7.5.0]` ", "Thanks for reporting, @loubnabnl and for the additional information, @PartiallyTyped.\r\n\r\nHowever, I'm not able to reproduce this issue, neither locally nor on Colab:\r\n```\r\nDataset({\r\n features: ['repo_name', 'path', 'copies', 'size', 'content', 'license', 'hash', 'line_mean', 'line_max', 'alpha_frac', 'autogenerated'],\r\n num_rows: 10\r\n})\r\nDataset({\r\n features: ['repo_name', 'path', 'copies', 'size', 'content', 'license', 'hash', 'line_mean', 'line_max', 'alpha_frac', 'autogenerated'],\r\n num_rows: 10\r\n})\r\n```\r\nCC: @huggingface/datasets can anybody reproduce this?", "This is the minimum reproducible example. I ran this on the premium instances of colab.\r\n\r\n```\r\n# !pip install datasets\r\nimport datasets\r\nfrom datasets import load_dataset\r\nds = load_dataset(\"copenlu/answerable_tydiqa\").filter(\"english\".__eq__, input_columns=\"language\")\r\nassert all(map(\"english\".__eq__, ds[\"train\"][\"language\"]))\r\n```\r\n\r\nIn my case, the number of samples is correct, however, the samples selected when indexing are wrong.\r\n\r\n```python\r\nDatasetDict({\r\n validation: Dataset({\r\n features: ['question_text', 'document_title', 'language', 'annotations', 'document_plaintext', 'document_url'],\r\n num_rows: 990\r\n })\r\n train: Dataset({\r\n features: ['question_text', 'document_title', 'language', 'annotations', 'document_plaintext', 'document_url'],\r\n num_rows: 7389\r\n })\r\n})\r\n```\r\n\r\nThe number of rows is indeed correct, and i have checked it with a version that works.", "I can reproduce the issue on my mac too \r\n```\r\n- `datasets` version: 2.6.0\r\n- Platform: macOS-12.2.1-arm64-arm-64bit\r\n- Python version: 3.9.13\r\n- PyArrow version: 9.0.0\r\n- Pandas version: 1.4.3\r\n```\r\nBut not on Colab with python 3.7, maybe related to python version? (didn't manage to install python 3.9)\r\n```\r\n- `datasets` version: 2.6.0\r\n- Platform: Linux-5.10.133+-x86_64-with-Ubuntu-18.04-bionic\r\n- Python version: 3.7.14\r\n- PyArrow version: 9.0.0\r\n- Pandas version: 1.3.5\r\n```", "I have the same issue, here's a simple notebook to reproduce: https://colab.research.google.com/drive/1Lvo9fg5DSpGUUgXW5JAutZ0bFsR-WV--?usp=sharing\r\n\r\n\r\n\r\n", "I think there are 2 different issues here:\r\n- the one reported by @loubnabnl is related to multiprocessing in map and then filter; we should reproduce it first: I have tried with Python version 3.9.7 and I can't reproduce it either; maybe it is related to the version of PyArrow? To be checked.\r\n- the issue reported by @PartiallyTyped is related just to \"filter\" (without multiprocessing) and I can reproduce it.", "Could you create another issue for the @PartiallyTyped one please ?\r\n\r\nRegarding the OP issue, I also tried on colab or locally on py3.7 or py3.10 but didn't reproduce", "I have created another issue for the one reported by @PartiallyTyped: \r\n- #5112 ", "I managed to reproduce your issue @loubnabnl on colab by upgrading pyarrow to 9.0.0 instead of 6.0.1", "I managed to have a _super_ minimal reproducible example:\r\n```python\r\n\r\nfrom datasets import Dataset, concatenate_datasets\r\n\r\nds = concatenate_datasets([Dataset.from_dict({\"a\": [i]}) for i in range(10)])\r\nds2 = ds.map(lambda _: {}, batched=True)\r\nassert list(ds2) == list(ds)\r\n```\r\n(filter uses a batched `map` under the hood)", "> the one reported by @loubnabnl is related to multiprocessing in map and then filter; we should reproduce it first: I have tried with Python version 3.9.7 and I can't reproduce it either; maybe it is related to the version of PyArrow? To be checked.\r\n\r\nSo finally it was related to PyArrow version! :+1: ", "Doing a patch release asap :)", "Did the patch release yesterday, lmk if you still have issues", "It works now, thanks!\r\n" ]
2022-10-13T17:00:55
2022-10-17T08:26:59
2022-10-14T14:59:59
NONE
null
## Describe the bug When mapping is used on a dataset with more than one process, there is a weird behavior when trying to use `filter` , it's like only the samples from one worker are retrieved, one needs to specify the same `num_proc` in filter for it to work properly. This doesn't happen with `datasets` version 2.5.2 In the code below the data is filtered differently when we increase `num_proc` used in `map` although the datsets before and after mapping have identical elements. ## Steps to reproduce the bug ```python import datasets from datasets import load_dataset def preprocess(example): return example ds = load_dataset("codeparrot/codeparrot-clean-valid", split="train").select([i for i in range(10)]) ds1 = ds.map(preprocess, num_proc=2) ds2 = ds.map(preprocess) # the datasets elements are the same for i in range(len(ds1)): assert ds1[i]==ds2[i] print(f'Target column before filtering {ds1["autogenerated"]}') print(f'Target column before filtering {ds2["autogenerated"]}') print(f"datasets version {datasets.__version__}") ds_filtered_1 = ds1.filter(lambda x: not x["autogenerated"]) ds_filtered_2 = ds2.filter(lambda x: not x["autogenerated"]) # all elements in Target column are false so they should all be kept, but for ds2 only the first 5=num_samples/num_proc are kept print(ds_filtered_1) print(ds_filtered_2) ``` ``` Target column before filtering [False, False, False, False, False, False, False, False, False, False] Target column before filtering [False, False, False, False, False, False, False, False, False, False] Dataset({ features: ['repo_name', 'path', 'copies', 'size', 'content', 'license', 'hash', 'line_mean', 'line_max', 'alpha_frac', 'autogenerated'], num_rows: 5 }) Dataset({ features: ['repo_name', 'path', 'copies', 'size', 'content', 'license', 'hash', 'line_mean', 'line_max', 'alpha_frac', 'autogenerated'], num_rows: 10 }) ``` ## Expected results Increasing `num_proc` in mapping shouldn't alter filtering. With the previous version 2.5.2 this doesn't happen ## Actual results Filtering doesn't work properly when we increase `num_proc` in mapping but not when calling `filter` ## Environment info <!-- You can run the command `datasets-cli env` and copy-and-paste its output below. --> - `datasets` version: 2.6.0 - Platform: Linux-4.19.0-22-cloud-amd64-x86_64-with-glibc2.28 - Python version: 3.9.13 - PyArrow version: 8.0.0 - Pandas version: 1.4.2
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5,109
Map caching not working for some class methods
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[ "The hash used for caching is computed by pickling recursively the function passed to `map`. Maybe some objects don't have the same hash across sessions. In particular you can check the hash of your model using\r\n```python\r\nfrom datasets.fingerprint import Hasher\r\nobj = AutoModel.from_config(config=config, add_pooling_layer=False)\r\nprint(Hasher.hash(obj))\r\n```\r\n\r\nYou can find mode info here: https://huggingface.co/docs/datasets/about_cache\r\n\r\nYou can also provide your own unique hash in `map` if you want, with the `new_fingerprint` argument", "Indeed, the hash is changing. The `dumps` function serialize the model object in different ways because the model object is not deterministic\r\n```python\r\nfrom datasets.utils.py_utils import dumps\r\nobj1 = AutoModel.from_config(config=config, add_pooling_layer=False)\r\nobj2 = AutoModel.from_config(config=config, add_pooling_layer=False)\r\n\r\ndumps(bert) == dumps(bert2). # False\r\n```\r\n\r\n> You can find mode info here: https://huggingface.co/docs/datasets/about_cache\r\n> \r\n> You can also provide your own unique hash in map if you want, with the new_fingerprint argument\r\n\r\n\r\nThanks, the doc is so helpful. Indeed, we can fix the hash and get cache hit using `new_fingerprint`. Closing the issue." ]
2022-10-13T09:12:58
2022-10-17T10:38:45
2022-10-17T10:38:45
CONTRIBUTOR
null
## Describe the bug The cache loading is not working as expected for some class methods with a model stored in an attribute. The new fingerprint for `_map_single` is not the same at each run. The hasher generate a different hash for the class method. This comes from `dumps` function in `datasets.utils.py_utils` which generates a different dump at each run. ## Steps to reproduce the bug ```python from datasets import load_dataset from transformers import AutoConfig, AutoModel, AutoTokenizer dataset = load_dataset("ethos", "binary") BASE_MODELNAME = "sentence-transformers/all-MiniLM-L6-v2" class Object: def __init__(self): config = AutoConfig.from_pretrained(BASE_MODELNAME) self.bert = AutoModel.from_config(config=config, add_pooling_layer=False) self.tok = AutoTokenizer.from_pretrained(BASE_MODELNAME) def tokenize(self, examples): tokenized_texts = self.tok( examples["text"], padding="max_length", truncation=True, max_length=256, ) return tokenized_texts instance = Object() result = dict() for phase in ["train"]: result[phase] = dataset[phase].map(instance.tokenize, batched=True, load_from_cache_file=True, num_proc=2) ``` ## Expected results Load cache instead of recompute result. ## Actual results Result recomputed from scratch at each run. The cache works fine when deleting `bert` attribute. ## Environment info - `datasets` version: 2.5.3.dev0 - Platform: macOS-10.16-x86_64-i386-64bit - Python version: 3.9.13 - PyArrow version: 7.0.0 - Pandas version: 1.5.0
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Fix a typo in arrow_dataset.py
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2022-10-14T09:47:28
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Multiprocessed dataset builder
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[ "I would also like to add a test, but am not sure whether it should go into `test_builder` (more natural imo) or `test_load` (which already contains a lot of the things I have to import to run my current testing setup). For reference, what I run to test that it works looks like:\r\n\r\n```\r\nimport os\r\nfrom pathlib import Path\r\nimport shutil\r\n\r\nimport datasets\r\nfrom datasets.builder import DatasetBuilder\r\nfrom datasets.features import Features, Value\r\n\r\nDATASET_LOADING_SCRIPT_NAME = \"__dummy_dataset1__\"\r\n\r\nDATASET_LOADING_SCRIPT_CODE = \"\"\"\r\nimport os\r\n\r\nimport datasets\r\nfrom datasets import DatasetInfo, Features, Split, SplitGenerator, Value\r\n\r\n\r\nclass __DummyDataset1__(datasets.GeneratorBasedBuilder):\r\n\r\n def _info(self) -> DatasetInfo:\r\n return DatasetInfo(features=Features({\"text\": Value(\"string\")}))\r\n\r\n def _split_generators(self, dl_manager):\r\n return [\r\n SplitGenerator(Split.TRAIN, gen_kwargs={\"filepaths\": [os.path.join(dl_manager.manual_dir, \"train1.txt\"), os.path.join(dl_manager.manual_dir, \"train2.txt\")]}),\r\n SplitGenerator(Split.TEST, gen_kwargs={\"filepaths\": [os.path.join(dl_manager.manual_dir, \"test.txt\")]}),\r\n ]\r\n\r\n def _generate_examples(self, filepaths, **kwargs):\r\n idx = 0\r\n for filepath in filepaths:\r\n with open(filepath, \"r\", encoding=\"utf-8\") as f:\r\n for line in f:\r\n yield idx, {\"text\": line.strip()}\r\n idx += 1\r\n\"\"\"\r\n\r\n\r\ndef dataset_loading_script_dir(tmp_path):\r\n script_name = DATASET_LOADING_SCRIPT_NAME\r\n script_dir = tmp_path / script_name\r\n script_dir.mkdir()\r\n script_path = script_dir / f\"{script_name}.py\"\r\n with open(script_path, \"w\") as f:\r\n f.write(DATASET_LOADING_SCRIPT_CODE)\r\n return str(script_dir)\r\n\r\n\r\ndef data_dir(tmp_path):\r\n data_dir = tmp_path / \"data_dir\"\r\n data_dir.mkdir()\r\n with open(data_dir / \"train1.txt\", \"w\") as f:\r\n f.write(\"foo\\n\" * 10)\r\n with open(data_dir / \"train2.txt\", \"w\") as f:\r\n f.write(\"foo\\n\" * 10)\r\n with open(data_dir / \"test.txt\", \"w\") as f:\r\n f.write(\"bar\\n\" * 10)\r\n return str(data_dir)\r\n\r\n\r\ndef load_dataset_builder_multiprocessed(tmp_path):\r\n builder = datasets.load_dataset_builder(\r\n os.path.join(dataset_loading_script_dir(tmp_path), DATASET_LOADING_SCRIPT_NAME + \".py\"),\r\n data_dir=data_dir(tmp_path),\r\n )\r\n assert isinstance(builder, DatasetBuilder)\r\n assert builder.name == DATASET_LOADING_SCRIPT_NAME\r\n assert builder.info.features == Features({\"text\": Value(\"string\")})\r\n builder.download_and_prepare(tmp_path / \"prepare_target\", max_shard_size=500, num_proc=2)\r\n\r\nif __name__ == \"__main__\":\r\n tmp_path = \"tmp\"\r\n if os.path.exists(tmp_path):\r\n raise FileExistsError(f\"path {tmp_path} already exists\")\r\n os.makedirs(tmp_path)\r\n try:\r\n load_dataset_builder_multiprocessed(Path(tmp_path))\r\n finally:\r\n # pass\r\n shutil.rmtree(tmp_path)\r\n```", "The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5107). All of your documentation changes will be reflected on that endpoint.", "Nice ! I think the test can go in `test_builder.py` :)", "I've added sharded arrow dataset loading. Two WIP items in the PR:\r\n- ~~Order is not conserved (it seems like the sharded files are read in the wrong order)~~\r\n- the tqdm for preparing the splits is wrong (it compares against the size of the whole split rather than against the size of the multiprocessing shard, but I am not sure how to access the latter)\r\n\r\nAlso `naming.filenames_for_dataset_split` is not very elegant imo.\r\n\r\n@lvwerra if you don't care about order, as I do, it's functional for now but I'd still quite like to get to the bottom of this.", "Found the ordering bug ! (`glob.glob` returning stuff in arbitrary order)", "I fixed the tqdm to be less misleading, but it can't tell where to stop. I am a bit hesitant to add a top-level tqdm (on the shard iterator) since for most intents it will do 0 -> N shards straight, but I am not sure what is the best way to present that info here.", "I'm continuing the PR :)", "Did a few changes:\r\n- make shards naming consistent:\r\n - use `{builder_name}-{split_name}.{file_format}` when there's only 1 shard\r\n - otherwise use `{builder_name}-{split_name}-{shard_idx:05d}-of-{num_shards:05d}.{file_format}`\r\n- update the reader to support reading several shards\r\n - added a new `shard_lengths` field in `SplitInfo` (FYI it is saved in `dataset_info.json` next to the shards as usual)\r\n - it's None when there's only 1 shard\r\n - otherwise it's a list of integers that correspond to the number of rows per shard\r\n - implemented partial reading to only memory map the required shards\r\n - e.g. when someone asks for a partial split like `train[:10%]`\r\n- align the sharding for beam datasets\r\n - no more combining into 1 big arrow file\r\n- added a tqdm bar\r\n - only one single bar, handled by the main process\r\n - gathers progress updates from other processes using `iflatmap_unordered`\r\n - shows the number of examples (even for datasets prepared by generating arrow tables)\r\n- disabled multiprocessing by default - users must pass `num_proc` explicitly\r\n- tests\r\n- docs", "Alright this is ready for review - sorry it ended up so big ^^'\r\n\r\nIf I can do anything to make it easier for your to review this PR @mariosasko let me know", "Multiprocessing is disabled by default but we may show a warning to encourage users to pass `num_proc` if the dataset is split in many files. Let me know what you think", "Hey, is this error seems to you guys natural? \r\n\r\nThe package built from `0d4e3907` commit tag, and here is the version displayed from the import ... \r\n```bash\r\n>>> datasets.__version__\r\n'2.6.1.dev0'\r\n>>> \r\n```\r\n\r\n```bash\r\n>>> data = load_dataset('dataset_loaders/rfw2latentplay', num_proc=14)\r\nTraceback (most recent call last):\r\n File \"<stdin>\", line 1, in <module>\r\n File \"/somewhere//mambaforge/envs/datasets/lib/python3.8/site-packages/datasets/load.py\", line 1719, in load_dataset\r\n builder_instance = load_dataset_builder(\r\n File \"/somewhere//mambaforge/envs/datasets/lib/python3.8/site-packages/datasets/load.py\", line 1523, in load_dataset_builder\r\n builder_instance: DatasetBuilder = builder_cls(\r\n File \"/somewhere//mambaforge/envs/datasets/lib/python3.8/site-packages/datasets/builder.py\", line 1292, in __init__\r\n super().__init__(*args, **kwargs)\r\n File \"/somewhere//mambaforge/envs/datasets/lib/python3.8/site-packages/datasets/builder.py\", line 303, in __init__\r\n self.config, self.config_id = self._create_builder_config(\r\n File \"/somewhere//mambaforge/envs/datasets/lib/python3.8/site-packages/datasets/builder.py\", line 456, in _create_builder_config\r\n builder_config = self.BUILDER_CONFIG_CLASS(**config_kwargs)\r\nTypeError: __init__() got an unexpected keyword argument 'num_proc'\r\n```\r\n\r\nLet me know if I can help fixing this ... \r\n", "> Do we have some benchmarks to see the speed-up?\r\n\r\nOn my machine running `load_dataset(\"oscar-corpus/OSCAR-2201\", \"br\")` (which is split in shards) I go from 2-3k examples per sec to 4-5k examples per sec with num_proc=2 😉", "> Hey, is this error seems to you guys natural?\r\n>\r\n> The package built from 0d4e3907 commit tag, and here is the version displayed from the import ...\r\n\r\nI don't know where you got the `0d4e3907` commit tag from, it doesn't seem to be in this PR. You should try installing from this PR, or wait for it to be merged on `main`", "## Splits vs Shards\r\n\r\nMaybe it's a good idea to add some documentation on the `sharding` that can be achieved by passing `list` based arguments to the `SplitGenerator`s `gen_kwargs` ... \r\n\r\nI had to read the whole dataset generation source code to find this out ... \r\n\r\n\r\n", "> Maybe it's a good idea to add some documentation on the sharding that can be achieved by passing list based arguments to the SplitGenerators gen_kwargs ...\r\n\r\nThis is part of this PR :) you can check the changes in docs/source/dataset_script.mdx", "I took your comments into account @mariosasko thanks !\r\nLet me know if it's good for you now ;)", "The doc CI should be fixed by now hopefully, merging !" ]
2022-10-12T19:59:17
2022-12-01T15:37:09
2022-11-09T17:11:43
CONTRIBUTOR
null
This PR adds the multiprocessing part of #2650 (but not the caching of already-computed arrow files). On the other side, loading of sharded arrow files still needs to be implemented (sharded parquet files can already be loaded).
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5,106
Fix task template reload from dict
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[ "_The documentation is not available anymore as the PR was closed or merged._", "> Just wondering if there might be other data classes default values missed that could cause an issue... Apart from feature-like classes and tasks, I don't see any others though...\r\n\r\nI think we're good ! `asdict` is used on the DatasetInfo attributes like features, tasks etc. and they all support dict conversion properly now\r\n\r\n> And a question: but this information about the tasks is no longer being saved as YAML tags in the dataset card; won't be a problem with current datasets using task templates (with this information in their metadata JSON) once we replace the JSON by the YAML tags (which do not have this information about the task templates)?\r\n\r\nIn the long run we'll use the train_eval_index YAML tags instead, but I agree when removing the JSON files we should try to not break existing code that may rely on this" ]
2022-10-12T18:33:49
2022-10-13T09:59:07
2022-10-13T09:56:51
MEMBER
null
Since #4926 the JSON dumps are simplified and it made task template dicts empty by default. I fixed this by always including the task name which is needed to reload a task from a dict
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5,105
Specifying an exisiting folder in download_and_prepare deletes everything in it
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[ "cc @lhoestq ", "Thanks for reporting, @cakiki.\r\n\r\nI would say the deletion of the dir is an expected behavior though...", "`dask.to_parquet` has an \"overwrite\" parameter and default is `False`, we could also have something similar", "Thank you both for your feedback!\r\n\r\n@albertvillanova I think I might have have the wrong mental model of what the function was meant to do. I thought it would be an API similar to the pandas `to_XX` write methods (Like the one @lhoestq mentions) so I just assumed it would download the dataframe to whichever folder I specififed (`\"./\"` in my case) so I could load it into a dask dataframe. I absolutely did not expect it to delete everything in my local directory, including the script where I called it from :smile: \r\n\r\nI think Quentin's proposed solution sounds like a reasonable feature!", "actually there's already a `download_mode` parameter that defaults to `REUSE_DATASET_IF_EXISTS` - so I guess it's just a matter of not deleting files unrelated to the dataset, and to overwrite existing dataset files if the download mode is `REUSE_CACHE_IF_EXISTS` or `FORCE_REDOWNLOAD`" ]
2022-10-12T11:53:33
2022-10-20T11:53:59
null
CONTRIBUTOR
null
## Describe the bug The builder correctly creates the `output_dir` folder if it doesn't exist, but if the folder exists everything within it is deleted. Specifying `"."` as the `output_dir` deletes everything in your current dir but also leads to **another bug** whose traceback is the following: ``` Traceback (most recent call last) Input In [11], in <cell line: 1>() ----> 1 rotten_tomatoes_builder.download_and_prepare(output_dir=".", max_shard_size="200MB", file_format="parquet") File ~/BIGSCIENCE/env/lib/python3.9/site-packages/datasets/builder.py:818, in download_and_prepare(self, output_dir, download_config, download_mode, ignore_verifications, try_from_hf_gcs, dl_manager, base_path, use_auth_token, file_format, max_shard_size, storage_options, **download_and_prepare_kwargs) File /usr/lib/python3.9/contextlib.py:124, in _GeneratorContextManager.__exit__(self, type, value, traceback) 122 if type is None: 123 try: --> 124 next(self.gen) 125 except StopIteration: 126 return False File ~/BIGSCIENCE/env/lib/python3.9/site-packages/datasets/builder.py:760, in incomplete_dir(dirname) File /usr/lib/python3.9/shutil.py:722, in rmtree(path, ignore_errors, onerror) 720 os.rmdir(path) 721 except OSError: --> 722 onerror(os.rmdir, path, sys.exc_info()) 723 else: 724 try: 725 # symlinks to directories are forbidden, see bug #1669 File /usr/lib/python3.9/shutil.py:720, in rmtree(path, ignore_errors, onerror) 718 _rmtree_safe_fd(fd, path, onerror) 719 try: --> 720 os.rmdir(path) 721 except OSError: 722 onerror(os.rmdir, path, sys.exc_info()) OSError: [Errno 22] Invalid argument: '/home/christopher/BIGSCIENCE/.' ``` ## Steps to reproduce the bug ```python rotten_tomatoes_builder = load_dataset_builder("rotten_tomatoes") rotten_tomatoes_builder.download_and_prepare(output_dir="./test_folder", max_shard_size="200MB", file_format="parquet") ``` If `test_folder` contains any files they will all be deleted ## Expected results Either a warning that all files will be deleted, but preferably that they not be deleted at all. ## Actual results N/A ## Environment info <!-- You can run the command `datasets-cli env` and copy-and-paste its output below. --> - `datasets` version: 2.3.2 - Platform: Linux-5.15.0-48-generic-x86_64-with-glibc2.29 - Python version: 3.8.10 - PyArrow version: 8.0.0 - Pandas version: 1.4.3
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5,104
Fix loading how to guide (#5102)
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-12T10:34:42
2022-10-12T11:34:07
2022-10-12T11:31:55
CONTRIBUTOR
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url encode hub url (#5099)
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2022-10-12T10:22:12
2022-10-12T15:27:24
2022-10-12T15:24:47
CONTRIBUTOR
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I_kwDODunzps5Turs6
5,102
Error in create a dataset from a Python generator
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null
[ "Hi, thanks for reporting! The last line should be `dataset = Dataset.from_generator(my_gen)`.", "Can I work on this one?" ]
2022-10-11T14:28:58
2022-10-12T11:31:56
2022-10-12T11:31:56
NONE
null
## Describe the bug In HOW-TO-GUIDES > Load > [Python generator](https://huggingface.co/docs/datasets/v2.5.2/en/loading#python-generator), the code example defines the `my_gen` function, but when creating the dataset, an undefined `my_dict` is passed in. ```Python >>> from datasets import Dataset >>> def my_gen(): ... for i in range(1, 4): ... yield {"a": i} >>> dataset = Dataset.from_generator(my_dict) ```
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1,404,513,085
PR_kwDODunzps5AkHJc
5,101
Free the "hf" filesystem protocol for `hffs`
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-11T11:57:21
2022-10-12T15:32:59
2022-10-12T15:30:38
MEMBER
null
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1,404,458,586
I_kwDODunzps5TtlZa
5,100
datasets[s3] sagemaker can't run a model - datasets issue with Value and ClassLabel and cast() method
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2022-10-11T11:16:31
2022-10-11T13:48:26
2022-10-11T13:48:26
NONE
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1,404,370,191
I_kwDODunzps5TtP0P
5,099
datasets doesn't support # in data paths
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[ "`datasets` doesn't seem to urlencode the directory names here\r\n\r\nhttps://github.com/huggingface/datasets/blob/7feeb5648a63b6135a8259dedc3b1e19185ee4c7/src/datasets/utils/file_utils.py#L109-L111\r\n\r\nfor example we should have\r\n```python\r\nfrom datasets.utils.file_utils import hf_hub_url\r\n\r\nurl = hf_hub_url(\"loubnabnl/bigcode_csharp\", \"data/c#/data_0003.jsonl\")\r\nprint(url)\r\n# Currently returns\r\n# https://huggingface.co/datasets/loubnabnl/bigcode_csharp/resolve/main/data/c#/data_0003.jsonl\r\n# while it should be \r\n# https://huggingface.co/datasets/loubnabnl/bigcode_csharp/resolve/main/data/c%23/data_0003.jsonl\r\n```", "I'll work on this :)", "@loubnabnl The dataset you linked in the description of the bug does not work and returns a 404. Where can I find the dataset to reproduce the bug?", "I think you can create a dataset repository on the Hub with a dummy file containing a `#`", "Ah sorry it was private I just made it public, I can also help with this if needed", "@lhoestq Should I url encode also repo_id and revision parameters? I'm not sure what are the valid characters there.\r\n\r\nPersonally, I would be cautious and only url encode the path parameter.", "These are possible solutions (assuming `from urllib.parse import quote`):\r\n\r\n1) url encode only the path parameter:\r\n```\r\n# src/datasets/utils/file_utils.py\r\ndef hf_hub_url(repo_id: str, path: str, revision: Optional[str] = None) -> str:\r\n revision = revision or config.HUB_DEFAULT_VERSION\r\n return config.HUB_DATASETS_URL.format(repo_id=repo_id, path=quote(path), revision=revision)\r\n```\r\n2) url encode all parameters:\r\n```\r\n# src/datasets/utils/file_utils.py\r\ndef hf_hub_url(repo_id: str, path: str, revision: Optional[str] = None) -> str:\r\n revision = revision or config.HUB_DEFAULT_VERSION\r\n return config.HUB_DATASETS_URL.format(repo_id=quote(repo_id), path=quote(path), revision=quote(revision))\r\n```\r\n3) url encode the whole url:\r\n```\r\n# src/datasets/config.py\r\nHUB_DATASETS_PATH = \"/datasets/{repo_id}/resolve/{revision}/{path}\"\r\nHUB_DATASETS_URL = HF_ENDPOINT + HUB_DATASETS_PATH\r\n```\r\n```\r\n# src/datasets/utils/file_utils.py\r\ndef hf_hub_url(repo_id: str, path: str, revision: Optional[str] = None) -> str:\r\n revision = revision or config.HUB_DEFAULT_VERSION\r\n return config.HF_ENDPOINT + quote(config.HUB_DATASETS_PATH.format(repo_id=repo_id, path=path, revision=revision))\r\n```", "repo_id can only contain alphanumeric characters and _- so it doesn't need to be encoded.\r\n\r\nHowever I agree it's a good idea to also apply `quote` to the revision as well as in 2. !", "Should be fixed by https://github.com/huggingface/datasets/issues/5099 - we'll do a release later today" ]
2022-10-11T10:05:32
2022-10-13T13:14:20
2022-10-13T13:14:20
NONE
null
## Describe the bug dataset files with `#` symbol their paths aren't read correctly. ## Steps to reproduce the bug The data in folder `c#`of this [dataset](https://huggingface.co/datasets/loubnabnl/bigcode_csharp) can't be loaded. While the folder `c_sharp` with the same data is loaded properly ```python ds = load_dataset('loubnabnl/bigcode_csharp', split="train", data_files=["data/c#/*"]) ``` ``` FileNotFoundError: Couldn't find file at https://huggingface.co/datasets/loubnabnl/bigcode_csharp/resolve/27a3166cff4bb18e11919cafa6f169c0f57483de/data/c#/data_0003.jsonl ``` ## Environment info <!-- You can run the command `datasets-cli env` and copy-and-paste its output below. --> - `datasets` version: 2.5.2 - Platform: macOS-12.2.1-arm64-arm-64bit - Python version: 3.9.13 - PyArrow version: 9.0.0 - Pandas version: 1.4.3 cc @lhoestq
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1,404,058,518
I_kwDODunzps5TsDuW
5,098
Classes label error when loading symbolic links using imagefolder
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[ "It can be solved temporarily by remove `resolve` in \r\nhttps://github.com/huggingface/datasets/blob/bef23be3d9543b1ca2da87ab2f05070201044ddc/src/datasets/data_files.py#L278", "Hi, thanks for reporting and suggesting a fix! We still need to account for `.`/`..` in the file path, so a more robust fix would be `Path(os.path.abspath(filepath))`.", "> Hi, thanks for reporting and suggesting a fix! We still need to account for `.`/`..` in the file path, so a more robust fix would be `Path(os.path.abspath(filepath))`.\r\n\r\nThanks for your reply!" ]
2022-10-11T06:10:58
2022-11-14T14:40:20
2022-11-14T14:40:20
NONE
null
**Is your feature request related to a problem? Please describe.** Like this: #4015 When there are **symbolic links** to pictures in the data folder, the parent folder name of the **real file** will be used as the class name instead of the parent folder of the symbolic link itself. Can you give an option to decide whether to enable symbolic link tracking? This is inconsistent with the `torchvision.datasets.ImageFolder` behavior. For example: ![image](https://user-images.githubusercontent.com/49552732/195008591-3cce644e-aabe-4f39-90b9-832861cadb3d.png) ![image](https://user-images.githubusercontent.com/49552732/195008841-0b0c2289-eb7f-411a-977b-37426f23a277.png) It use `others` in green circle as class label but not `abnormal`, I wish `load_dataset` not use the real file parent as label. **Describe the solution you'd like** A clear and concise description of what you want to happen. **Describe alternatives you've considered** A clear and concise description of any alternative solutions or features you've considered. **Additional context** Add any other context about the feature request here.
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1,403,679,353
I_kwDODunzps5TqnJ5
5,097
Fatal error with pyarrow/libarrow.so
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[ "Thanks for reporting, @catalys1.\r\n\r\nThis seems a duplicate of:\r\n- #3310 \r\n\r\nThe source of the problem is in PyArrow:\r\n- [ARROW-15141: [C++] Fatal error condition occurred in aws_thread_launch](https://issues.apache.org/jira/browse/ARROW-15141)\r\n- [ARROW-17501: [C++] Fatal error condition occurred in aws_thread_launch](https://issues.apache.org/jira/browse/ARROW-17501)\r\n\r\nThe bug in their dependency is still unresolved:\r\n- https://github.com/aws/aws-sdk-cpp/issues/1809\r\n\r\nApparently, the `aws-sdk-cpp` PyArrow dependency needs to be pinned at version `1.8.186` if using conda. Have you updated it after installing PyArrow?\r\n```shell\r\nconda list aws-sdk-cpp\r\n```\r\n\r\nMaybe you should try to downgrade it to that version:\r\n```shell\r\nconda install -c conda-forge aws-sdk-cpp=1.8.186\r\n```" ]
2022-10-10T20:29:04
2022-10-11T06:56:01
2022-10-11T06:56:00
NONE
null
## Describe the bug When using datasets, at the very end of my jobs the program crashes (see trace below). It doesn't seem to affect anything, as it appears to happen as the program is closing down. Just importing `datasets` is enough to cause the error. ## Steps to reproduce the bug This is sufficient to reproduce the problem: ```bash python -c "import datasets" ``` ## Expected results Program should run to completion without an error. ## Actual results ```bash Fatal error condition occurred in /opt/vcpkg/buildtrees/aws-c-io/src/9e6648842a-364b708815.clean/source/event_loop.c:72: aws_thread_launch(&cleanup_thread, s_event_loop_destroy_async_thread_fn, el_group, &thread_options) == AWS_OP_SUCCESS Exiting Application ################################################################################ Stack trace: ################################################################################ /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x200af06) [0x150dff547f06] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x20028e5) [0x150dff53f8e5] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x1f27e09) [0x150dff464e09] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x200ba3d) [0x150dff548a3d] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x1f25948) [0x150dff462948] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x200ba3d) [0x150dff548a3d] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x1ee0b46) [0x150dff41db46] /u/user/miniconda3/envs/env/lib/python3.10/site-packages/pyarrow/libarrow.so.900(+0x194546a) [0x150dfee8246a] /lib64/libc.so.6(+0x39b0c) [0x150e15eadb0c] /lib64/libc.so.6(on_exit+0) [0x150e15eadc40] /u/user/miniconda3/envs/env/bin/python(+0x28db18) [0x560ae370eb18] /u/user/miniconda3/envs/env/bin/python(+0x28db4b) [0x560ae370eb4b] /u/user/miniconda3/envs/env/bin/python(+0x28db90) [0x560ae370eb90] /u/user/miniconda3/envs/env/bin/python(_PyRun_SimpleFileObject+0x1e6) [0x560ae37123e6] /u/user/miniconda3/envs/env/bin/python(_PyRun_AnyFileObject+0x44) [0x560ae37124c4] /u/user/miniconda3/envs/env/bin/python(Py_RunMain+0x35d) [0x560ae37135bd] /u/user/miniconda3/envs/env/bin/python(Py_BytesMain+0x39) [0x560ae37137d9] /lib64/libc.so.6(__libc_start_main+0xf3) [0x150e15e97493] /u/user/miniconda3/envs/env/bin/python(+0x2125d4) [0x560ae36935d4] Aborted (core dumped) ``` ## Environment info - `datasets` version: 2.5.1 - Platform: Linux-4.18.0-348.23.1.el8_5.x86_64-x86_64-with-glibc2.28 - Python version: 3.10.4 - PyArrow version: 9.0.0 - Pandas version: 1.4.3
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1,403,379,816
I_kwDODunzps5TpeBo
5,096
Transfer some canonical datasets under an organization namespace
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null
[ "The transfer of the dummy dataset to the dummy org works as expected:\r\n```python\r\nIn [1]: from datasets import load_dataset; ds = load_dataset(\"dummy_canonical_dataset\", download_mode=\"force_redownload\"); ds\r\nDownloading builder script: 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 2.98k/2.98k [00:00<00:00, 2.01MB/s]\r\nDownloading and preparing dataset dummy_canonical_dataset/default (download: 411 bytes, generated: 385 bytes, post-processed: Unknown size, total: 796 bytes) to .../.cache/huggingface/datasets/dummy_canonical_dataset/default/1.0.0/100870c358637e269fee140585e61e1472d5075a9bf6f866719934c725e55fb4...\r\nDownloading data: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 411/411 [00:00<00:00, 293kB/s]\r\nDataset dummy_canonical_dataset downloaded and prepared to .../.cache/huggingface/datasets/dummy_canonical_dataset/default/1.0.0/100870c358637e269fee140585e61e1472d5075a9bf6f866719934c725e55fb4. Subsequent calls will reuse this data.\r\n100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 304.16it/s]\r\nOut[1]: \r\nDatasetDict({\r\n train: Dataset({\r\n features: ['langs', 'ner_tags', 'tokens'],\r\n num_rows: 3\r\n })\r\n})\r\n\r\nIn [2]: from datasets import load_dataset; ds = load_dataset(\"dummy-canonical-org/dummy_canonical_dataset\"); ds\r\nDownloading builder script: 100%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 2.98k/2.98k [00:00<00:00, 1.57MB/s]\r\nDownloading and preparing dataset dummy_canonical_dataset/default to .../.cache/huggingface/datasets/dummy-canonical-org___dummy_canonical_dataset/default/1.0.0/100870c358637e269fee140585e61e1472d5075a9bf6f866719934c725e55fb4...\r\nDataset dummy_canonical_dataset downloaded and prepared to .../.cache/huggingface/datasets/dummy-canonical-org___dummy_canonical_dataset/default/1.0.0/100870c358637e269fee140585e61e1472d5075a9bf6f866719934c725e55fb4. Subsequent calls will reuse this data.\r\n100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1/1 [00:00<00:00, 362.48it/s]\r\nOut[2]: \r\nDatasetDict({\r\n train: Dataset({\r\n features: ['langs', 'ner_tags', 'tokens'],\r\n num_rows: 3\r\n })\r\n})\r\n```", "Cool ! 🚀 " ]
2022-10-10T15:44:31
2023-06-07T07:51:54
null
MEMBER
null
As discussed during our @huggingface/datasets meeting, we are planning to move some "canonical" dataset scripts under their corresponding organization namespace (if this does not exist). On the contrary, if the dataset already exists under the organization namespace, we are deprecating the canonical one (and eventually delete it). First, we should test it using a dummy dataset/organization. TODO: - [x] Test with a dummy dataset - [x] Create dummy canonical dataset: https://huggingface.co/datasets/dummy_canonical_dataset - [x] Create dummy organization: https://huggingface.co/dummy-canonical-org - [x] Transfer dummy canonical dataset to dummy organization - [ ] Transfer datasets - [x] babi_qa => facebook - [x] cord19 => allenai - [x] emotion => dair-ai - [ ] gem => GEM - [x] hendrycks_test => cais/mmlu - [x] indonlu => indonlp - [ ] multilingual_librispeech => facebook - It already exists "facebook/multilingual_librispeech" - [ ] oscar => oscar-corpus - [x] peer_read => allenai - [x] qasper => allenai - [x] reddit => webis/tldr-17 - [x] russian_super_glue => russiannlp - [x] rvl_cdip => aharley - [x] s2orc => allenai - [x] scicite => allenai - [x] scifact => allenai - [x] scitldr => allenai - [x] swiss_judgment_prediction => rcds - [x] the_pile => EleutherAI - [ ] wmt14, wmt15, wmt16, wmt17, wmt18, wmt19,... => wmt - [ ] Deprecate (and eventually remove) datasets that cannot be transferred because they already exist - [x] banking77 => PolyAI - [x] common_voice => mozilla-foundation - [x] german_legal_entity_recognition => elenanereiss - ... EDIT: the list above is continuously being updated
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PR_kwDODunzps5Afzsq
5,095
Fix tutorial (#5093)
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[ "Oops I merged without linking to the hacktoberfest issue - not sure if it counts in this case\r\n\r\nsorry about that..\r\n\r\nNext time you can just mention \"Close #XXXX\" in your issue to link it", "It should :) (the `hacktoberfest` repo topic is all that matters)" ]
2022-10-10T13:55:15
2022-10-10T17:50:52
2022-10-10T15:32:20
CONTRIBUTOR
null
Close #5093
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I_kwDODunzps5To1xm
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Multiprocessing with `Dataset.map` and `PyTorch` results in deadlock
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[ "Hi ! Could it be an Out of Memory issue that could have killed one of the processes ? can you check your memory ?", "Hi! I don't think it is a memory issue. I'm monitoring the main and spawn python processes and threads with `htop` and the memory does not peak. Besides, the example I've posted above should not be that demanding in terms of memory, right? (I have 32GB of RAM). ", "Indeed it should be fine. I couldn't reproduce the error though - I ran your script on my side and it works fine. What version of pytorch are you using ?", "Interesting.. I'm using `torch 1.12.1`", "I also tried on colab and it works fine 🤔 \r\nMaybe something is wrong with your installation of pytorch ?", "Oh actually I just saw that you're using python 3.9\r\n\r\nThis could be related to https://github.com/huggingface/datasets/issues/4113\r\n\r\nWe'll fix that as soon as we can, in the meantime you can try to use use single process, or use an older version of python maybe ?", "I tried with python 3.7 and the issue persists. In collab, which also uses 3.7 I don't get the issue, so yes I guess is something on mu side... will post it here if I manage to fix it", "Hi! Which version of transformers are you using? I test the code on Colab (so python 3.7) with transformers 4.23.1, torch 1.12.1 and pyarrow 9.0.0 (also 6.x), it worked without stuck.", "Hi, I have the same problem in use **datasets.IterableDatasetDict.map()**\r\nmy pytorch is 2.0.0a0+gitc263bd4\r\nmy python is 3.8.16(default, Jun 12 2023, 17:37:21)\r\nwork on aarch64 in 16 node, each node with 4*nVidia-A100-40G\r\nevery node have 4 process execute code as ↓\r\n\r\n```\r\nfrom datasets import load_dataset, interleave_datasets, IterableDatasetDict, concatenate_datasets\r\n```\r\n...\r\n```\r\n model_args.cache_dir = '/home/scx/.cache'\r\n for dataset_name in data_args.datasets_name:\r\n train_datasets.append(\r\n load_dataset(\r\n dataset_name,\r\n cache_dir=model_args.cache_dir,\r\n use_auth_token=True if model_args.use_auth_token else None,\r\n streaming=data_args.streaming,\r\n split='train'\r\n ).select_columns('text')\r\n )\r\n valid_datasets.append(\r\n load_dataset(\r\n dataset_name,\r\n cache_dir=model_args.cache_dir,\r\n use_auth_token=True if model_args.use_auth_token else None,\r\n streaming=data_args.streaming,\r\n split='validation'\r\n ).select_columns('text')\r\n )\r\n train_dataset = interleave_datasets(train_datasets,\r\n probabilities=data_args.datasets_probabilities, \r\n seed=training_args.seed,\r\n stopping_strategy='all_exhausted')\r\n raw_datasets = IterableDatasetDict({'train': train_dataset, 'validation': valid_dataset})\r\n```\r\n...\r\n\r\n```\r\n tokenized_datasets = None\r\n with training_args.main_process_first(desc=\"dataset map tokenization\"):\r\n if not data_args.streaming:\r\n tokenized_datasets = raw_datasets.map(\r\n tokenize_function,\r\n batched=True,\r\n num_proc=data_args.preprocessing_num_workers,\r\n load_from_cache_file=not data_args.overwrite_cache,\r\n desc=\"Running tokenizer on dataset\",\r\n remove_columns=column_names,\r\n )\r\n else:\r\n #TODO 20230722\r\n logger.info('{}: {}'.format(__file__, 'tokenized_datasets = raw_datasets.map('))\r\n logger.info('len raw_datasets: {}'.format(len(raw_datasets.items())))\r\n logger.info('raw_datasets:{}'.format(raw_datasets.items()))\r\n tokenized_datasets = raw_datasets.map(\r\n tokenize_function,\r\n batched=True,\r\n batch_size=1000,\r\n remove_columns=column_names\r\n )\r\n logger.info('map ok!')\r\n logger.info('show train: {}'.format(next(iter(tokenized_datasets['train']))))\r\n logger.info('ok')\r\n # ### RAW CODE ###\r\n # tokenized_datasets = raw_datasets.map(\r\n # tokenize_function,\r\n # batched=True,\r\n # batch_size=1000,\r\n # remove_columns=column_names\r\n # )\r\n #TODO 20230722\r\n logger.info(\"Finish tokenization\")\r\n```\r\nthe output of my code is\r\n```\r\n07/22/2023 21:57:09 - INFO - __main__ - /demo/run_blue_space.py: tokenized_datasets = raw_datasets.map(\r\n07/22/2023 21:57:09 - INFO - __main__ - len raw_datasets: 2\r\n07/22/2023 21:57:09 - INFO - __main__ - raw_datasets:dict_items([('train', <datasets.iterable_dataset.IterableDataset object at 0x4005ee301190>), ('validation', <datasets.iterable_dataset.IterableDataset object at 0x4005ee5427f0>)])\r\n07/22/2023 21:57:09 - INFO - __main__ - map ok!\r\n07/22/2023 22:01:07 - INFO - __main__ - show train: {'input_ids': [14608, 26797, 31891, 34260, 12227, 33207, 5, 5, 31632, 26797, 31891, 34260, 12227, 33207, 7398, 28561, 31236, 31177, 31253, 33558, 31556, 31377, 72, 20732, 32383, 32295, 14027, 31178, 53, 61, 53, 55, 31189, 31146, 31321, 31235, 53, 61, 56, 58, 31189, 31145, 72, 53, 61, 58, 54, 31189, 54, 31245, 53, 60, 31224, 31896, 31178, 28561, 29331, 20732, 31888, 32637, 4426, 2824, 72, 53, 61, 60, 55, 31189, 53, 54, 31245, 53, 31224, 31896, 31178, 28561, 29331, 26137, 20732, 4426, 2824, 73, 54, 52, 52, 52, 31189, 61, 31245, 59, 31224, 31896, 31178, 29331, 28561, 20732, 4426, 2824, 73, 5], 'attention_mask': [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]}\r\n07/22/2023 22:01:07 - INFO - __main__ - ok\r\n```\r\n\r\n", "@bio-punk `IterableDatasetDict.map` does not support multiprocessing (only `DatasetDict.map` and `Dataset.map` do), so please open a new issue as this doesn't seem to be related to the original issue. ", "Closing as this issue doesn't seem to be related to `datasets`." ]
2022-10-10T13:50:56
2023-07-24T15:29:13
2023-07-24T15:29:13
NONE
null
## Describe the bug There seems to be an issue with using multiprocessing with `datasets.Dataset.map` (i.e. setting `num_proc` to a value greater than one) combined with a function that uses `torch` under the hood. The subprocesses that `datasets.Dataset.map` spawns [a this step](https://github.com/huggingface/datasets/blob/1b935dab9d2f171a8c6294269421fe967eb55e34/src/datasets/arrow_dataset.py#L2663) go into wait mode forever. ## Steps to reproduce the bug The below code goes into deadlock when `NUMBER_OF_PROCESSES` is greater than one. ```python NUMBER_OF_PROCESSES = 2 from transformers import AutoTokenizer, AutoModel from datasets import load_dataset dataset = load_dataset("glue", "mrpc", split="train") tokenizer = AutoTokenizer.from_pretrained("sentence-transformers/all-MiniLM-L6-v2") model = AutoModel.from_pretrained("sentence-transformers/all-MiniLM-L6-v2") model.to("cpu") def cls_pooling(model_output): return model_output.last_hidden_state[:, 0] def generate_embeddings_batched(examples): sentences_batch = list(examples['sentence1']) encoded_input = tokenizer( sentences_batch, padding=True, truncation=True, return_tensors="pt" ) encoded_input = {k: v.to("cpu") for k, v in encoded_input.items()} model_output = model(**encoded_input) embeddings = cls_pooling(model_output) examples['embeddings'] = embeddings.detach().cpu().numpy() # 64, 384 return examples embeddings_dataset = dataset.map( generate_embeddings_batched, batched=True, batch_size=10, num_proc=NUMBER_OF_PROCESSES ) ``` While debugging it I've seen that it gets "stuck" when calling `torch.nn.Embedding.forward` but some testing shows that the same happens with other functions from `torch.nn`. ## Environment info - Platform: Linux-5.14.0-1052-oem-x86_64-with-glibc2.31 - Python version: 3.9.14 - PyArrow version: 9.0.0 - Pandas version: 1.5.0 Not sure if this is a HF problem, a PyTorch problem or something I'm doing wrong.. Thanks!
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1,402,939,660
I_kwDODunzps5TnykM
5,093
Mismatch between tutoriel and doc
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[ "Hi, thanks for reporting! This line should be replaced with \r\n```python\r\ndataset = dataset.map(lambda examples: tokenizer(examples[\"text\"], return_tensors=\"np\"), batched=True)\r\n```\r\nfor it to work (the `return_tensors` part inside the `tokenizer` call).", "Can I work on this?", "Fixed in https://github.com/huggingface/datasets/pull/5095" ]
2022-10-10T10:23:53
2022-10-10T17:51:15
2022-10-10T17:51:14
CONTRIBUTOR
null
## Describe the bug In the "Process text data" tutorial, [`map` has `return_tensors` as kwarg](https://huggingface.co/docs/datasets/main/en/nlp_process#map). It does not seem to appear in the [function documentation](https://huggingface.co/docs/datasets/main/en/package_reference/main_classes#datasets.Dataset.map), nor to work. ## Steps to reproduce the bug MWE: ```python from transformers import AutoTokenizer tokenizer = AutoTokenizer.from_pretrained("bert-base-cased") from datasets import load_dataset dataset = load_dataset("lhoestq/demo1", split="train") dataset = dataset.map(lambda examples: tokenizer(examples["review"]), batched=True, return_tensors="pt") ``` ## Expected results return_tensors to be a valid kwarg :smiley: ## Actual results ```python >> TypeError: map() got an unexpected keyword argument 'return_tensors' ``` ## Environment info - `datasets` version: 2.3.2 - Platform: Linux-5.14.0-1052-oem-x86_64-with-glibc2.29 - Python version: 3.8.10 - PyArrow version: 8.0.0 - Pandas version: 1.4.3
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1,402,713,517
PR_kwDODunzps5AeIsS
5,092
Use HTML relative paths for tiles in the docs
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[ "_The documentation is not available anymore as the PR was closed or merged._", "> Good catch, @lewtun. Thanks for the fix.\r\n> \r\n> Do you know if there are other absolute paths in the docs that should be fixed as well?\r\n\r\nI found a few more in [0d4796b](https://github.com/huggingface/datasets/pull/5092/commits/0d4796b747e6620d9fcc17a8f74acc5cf4bba7be).\r\n\r\nHowever, I noticed that none of the cross-references (e.g. to API classes / methods) work locally, but that is probably just a limitation of the local build", "Thanks." ]
2022-10-10T07:24:27
2022-10-11T13:25:45
2022-10-11T13:23:23
MEMBER
null
This PR replaces the absolute paths in the landing page tiles with relative ones so that one can test navigation both locally in and in future PRs (see [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_5084/en/index) for an example PR where the links don't work). I encountered this while working on the `optimum` docs and figured I'd fix it elsewhere too :) Internal Slack thread: https://huggingface.slack.com/archives/C02GLJ5S0E9/p1665129710176619
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5,091
Allow connection objects in `from_sql` + small doc improvement
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[ "_The documentation is not available anymore as the PR was closed or merged._" ]
2022-10-07T12:39:44
2022-10-09T13:19:15
2022-10-09T13:16:57
CONTRIBUTOR
null
Allow connection objects in `from_sql` (emit a warning that they are cachable) and add a tip that explains the format of the con parameter when provided as a URI string. PS: ~~This PR contains a parameter link, so https://github.com/huggingface/doc-builder/pull/311 needs to be merged before it's "ready for review".~~ Done!
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Review sync issues from GitHub to Hub
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[ "Nice!!" ]
2022-10-07T12:31:56
2022-10-08T07:07:36
2022-10-08T07:07:36
MEMBER
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## Describe the bug We have discovered that sometimes there were sync issues between GitHub and Hub datasets, after a merge commit to main branch. For example: - this merge commit: https://github.com/huggingface/datasets/commit/d74a9e8e4bfff1fed03a4cab99180a841d7caf4b - was not properly synced with the Hub: https://github.com/huggingface/datasets/actions/runs/3002495269/jobs/4819769684 ``` [main 9e641de] Add Papers with Code ID to scifact dataset (#4941) Author: Albert Villanova del Moral <[email protected]> 1 file changed, 42 insertions(+), 14 deletions(-) push failed ! GitCommandError(['git', 'push'], 1, b'remote: ---------------------------------------------------------- \nremote: Sorry, your push was rejected during YAML metadata verification: \nremote: - Error: "license" does not match any of the allowed types \nremote: ---------------------------------------------------------- \nremote: Please find the documentation at: \nremote: https://huggingface.co/docs/hub/models-cards#model-card-metadata \nremote: ---------------------------------------------------------- \nTo [https://huggingface.co/datasets/scifact.git\n](https://huggingface.co/datasets/scifact.git/n) ! [remote rejected] main -> main (pre-receive hook declined)\nerror: failed to push some refs to \'[https://huggingface.co/datasets/scifact.git\](https://huggingface.co/datasets/scifact.git/)'', b'') ``` We are reviewing sync issues in previous commits to recover them and repushing to the Hub. TODO: Review - [x] #4941 - scifact - [x] #4931 - scifact - [x] #4753 - wikipedia - [x] #4554 - wmt17, wmt19, wmt_t2t - Fixed with "Release 2.4.0" commit: https://github.com/huggingface/datasets/commit/401d4c4f9b9594cb6527c599c0e7a72ce1a0ea49 - https://huggingface.co/datasets/wmt17/commit/5c0afa83fbbd3508ff7627c07f1b27756d1379ea - https://huggingface.co/datasets/wmt19/commit/b8ad5bf1960208a376a0ab20bc8eac9638f7b400 - https://huggingface.co/datasets/wmt_t2t/commit/b6d67191804dd0933476fede36754a436b48d1fc - [x] #4607 - [x] #4416 - lccc - Fixed with "Release 2.3.0" commit: https://huggingface.co/datasets/lccc/commit/8b1f8cf425b5653a0a4357a53205aac82ce038d1 - [x] #4367
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Resume failed process
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2022-10-07T08:07:03
2022-10-07T08:07:03
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**Is your feature request related to a problem? Please describe.** When a process (`map`, `filter`, etc.) crashes part-way through, you lose all progress. **Describe the solution you'd like** It would be good if the cache reflected the partial progress, so that after we restart the script, the process can restart where it left off. **Describe alternatives you've considered** Doing processing outside of `datasets`, by writing the dataset to json files and building a restart mechanism myself. **Additional context** N/A
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