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MIN12352
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codeparrot

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gt_array_get(sacluster->members, i));
}
ags->numofstoredsaclusters++;
while (currentexon < numofexons) {
node = getcoreExonnodefromSA(sacluster->representative, currentexon);
if (currentnode < gt_array_size(nodes)) {
/* compare current node with current exon */
if (!gt_range_overlap(&node.range,
&((Exonnode*) gt_array_get(nodes, currentnode))
->range)) {
/* the current exon does not overlap with the current node,
visit next node */
currentnode++;
}
else {
/* left borders are equal, merge exon and node */
mergenodes(gt_array_get(nodes, currentnode), &node);
currentnode++;
currentexon++;
}
freecoreExonnode(&node);
}
else {
/* save this node */
gt_array_add(nodes, node);
currentnode++;
currentexon++;
}
}
}
void gth_build_AGS_from_assembly(GthAGS *ags, GtBittab *assembly,
GtArray *saclusters)
{
unsigned long i;
GtArray *nodes;
GthExonAGS exonAGS;
GthSpliceSiteProb splicesiteprob;
Exonnode *exonnode;
nodes = gt_array_new(sizeof (Exonnode));
/* compute AGS, the exons are stored es Exonnodes, which are saved later
(see below) */
for (i = 0; i < gt_array_size(saclusters); i++) {
if (gt_bittab_bit_is_set(assembly, i))
addSAtoAGS(ags, *(GthSACluster**) gt_array_get(saclusters, i), nodes);
}
/* save exons */
for (i = 0; i < gt_array_size(nodes); i++) {
exonnode = gt_array_get(nodes, i);
exonAGS.range = exonnode->range;
exonAGS.score = computeexonscore(exonnode);
gt_array_add(ags->exons, exonAGS);
}
/* at least one exon node exists */
gt_assert(gt_array_size(nodes));
/* save the splice site probabilites (stored in the intron infos) */
for (i = 0; i < gt_array_size(nodes) - 1; i++) {
exonnode = gt_array_get(nodes, i);
splicesiteprob.donorsiteprob = exonnode->successorintron
->donorsiteprobability;
splicesiteprob.acceptorsiteprob = exonnode->successorintron
->acceptorsiteprobability;
gt_array_add(ags->splicesiteprobs, splicesiteprob);
}
/* last successor intron info points to null */
gt_assert(((Exonnode*) gt_array_get_last(nodes))->successorintron == NULL);
/* free space for nodes */
for (i = 0; i < gt_array_size(nodes); i++) {
exonnode = gt_array_get(nodes, i);
freecoreExonnode(exonnode);
}
gt_array_delete(nodes);
}
" gpl-2.0
mikeusry/Townsend-Security login_frame.php 121 "<?php
header('HTTP/1.1 301 Moved Permanently');
header('Location: http://www.townsendsecurity.com/support/ticket');
?>
" gpl-2.0
smartYi/Speech-recognition README.md 112 "# Speech-recognition
This is the source code for the project speech recognition system for course 188779 in CMU
" gpl-2.0
robinfoe/blmk public/scripts/froogaloop/script.js 11895 "// Scroll to the very bottom to see the stuff we wrote, the big giant blocks are:
// froogaloop
// and
// fitvid.js
;(function( $ ){
'use strict';