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58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | semilobar holoprosencephaly | characterized by the presence of a single forebrain hemisphere or lobe, often accompanied by a deficit in median facial development | 1 | 1 | 1 | 4 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | semilobar holoprosencephaly | intermediate form of holoprosencephaly characterized by incomplete forebrain division | 2 | 2 | 2 | 4 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal intestinal rotation | abnormal rotation of the intestines, usually referring to a failure of the intestines to rotate and position properly during embryonic development | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | biologically valid but circular as it fails to explicitly define rotation and the term appears in its own definition; "usually referring to" should be avoided |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal intestinal rotation | any anomaly in the normal turning and fixation of the intestine during development potentially resulting in twisting of the intestine | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal intestinal rotation | different arrangement or position of the small and large intestines, often causing issues with digestion | 3 | 2 | 2 | 5 | RAG | nous-hermes-13b | "different" is far from standard style; also definiton fails to specify that this anomaly occurs during (fetal) development |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal intestinal rotation | malrotation or nonrotation of the intestines around the superior mesenteric vessels during fetal development | 3 | 2 | 2 | 4 | RAG | gpt-4 | definition is biologically valid but circular; not sure about "the superior mesentric vessels" part, would need to do more research; also, nonrotation may be a distinct type of malrotation that warrants creation of a new, more granular term |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb oligodactyly | a congenital condition characterized by fewer than the normal number of digits on a forelimb | 3 | 2 | 2 | 4 | RAG | gpt-4 | definition fails to state that, in addition to fewer digits, parts of digits may be missing; not sure if location (autopod) should be specified here, as digits are part of the autopod |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb oligodactyly | congenital condition in which some digits or parts of digits are missing from the autopods of the forelimbs | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb oligodactyly | congenital condition in which some digits or parts of digits are missing | 1 | 1 | 1 | 5 | RAG | gpt-3.5-turbo | definition is too broad; I think it belongs to the parent term "oligodactyly" |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb oligodactyly | congenital condition in which some digits or parts of digits are missing on one or both forelimbs | 4 | 4 | 4 | 4 | RAG | nous-hermes-13b | missing the autopod part which may be superfluous in this case |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb syndactyly | The presence of webbed or fused digits in a forelimb. | 3 | 1 | 1 | 5 | RAG | nous-hermes-13b | highly inconsistent with the style guide as the first letter of the first word is capitilized and the definition ends with a full stop, which is not acceptable in the MP |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb syndactyly | any degree of webbing or fusion of the digits of the forelimb autopod, may involve only soft tissues or also can include bone | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb syndactyly | partial or complete webbing or fusion of the digits of the forelimb | 4 | 4 | 4 | 4 | RAG | gpt-3.5-turbo | missing the autopod part which may be superfluous in this case |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | forelimb syndactyly | webbing or fusion of the digits of the forelimb | 3 | 2 | 2 | 4 | RAG | gpt-4 | definition fails to specify partial or complete; missing the autopod part |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | hindlimb syndactyly | Abnormal fusion or webbing between the digits of a hindlimb. | 3 | 1 | 1 | 5 | RAG | nous-hermes-13b | highly inconsistent with the style guide as the first letter of the first word is capitilized and the definition ends with a full stop, which is not acceptable in the MP |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | hindlimb syndactyly | any degree of webbing or fusion of the digits of the hindlimb autopod, may involve only soft tissues or also can include bone | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | hindlimb syndactyly | syndactyly which involves the hindlimb | 3 | 2 | 2 | 5 | RAG | gpt-4 | biologically valid but circular as both terms appear in the definition |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | hindlimb syndactyly | webbing or fusion of the digits in the hindlimb | 3 | 2 | 2 | 4 | RAG | gpt-3.5-turbo | definition fails to specify partial or complete; missing the autopod part |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal adrenal gland zona fasciculata size | Any structural anomaly of the wide middle zone of the adrenal cortex that produces cortisol (hydrocortisone) characterized by an abnormal size. | 3 | 1 | 1 | 5 | RAG | nous-hermes-13b | circular and highly inconsistent with the style guide as the first letter of the first word is capitilized and the definition ends with a full stop |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal adrenal gland zona fasciculata size | anomaly in the size of the wide middle zone of the adrenal cortex that produces cortisol | 4 | 3 | 3 | 5 | curator | human | overall score is acceptable but no need to embed part of the definition contained in parent term AbnormalAdrenalGlandZonaFasciculataMorphology |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal adrenal gland zona fasciculata size | anomalous physical bulk of the wide middle zone of the adrenal gland that produces cortisol (hydrocortisone) | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | definition should be broader; here "physical bulk" makes me think more in terms of volume (a 3-D extent) whereas "size" can cover 1D, 2D and 3D measurement changes |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal adrenal gland zona fasciculata size | anomaly in the dimensions of the medium zone that forms the bulk of the adrenal cortex and is responsible for the secretion of glucocorticoids | 3 | 2 | 2 | 5 | RAG | gpt-4 | definition should be broader; here "dimensions" specifies an anomaly in a 1-D extent whereas "size" can cover 1D, 2D and 3D measurement changes |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal autopod size | abnormal size of the autopod | 3 | 2 | 2 | 4 | RAG | gpt-3.5-turbo | circular |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal autopod size | anomaly in the size of the distal elements of the limb | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal autopod size | any anomaly in the size of the terminal part of the limb | 3 | 3 | 3 | 4 | RAG | gpt-4 | ambiguously stated but acceptable; "terminal part" is not quite as accurate as "distal elements" |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal autopod size | any structural anomaly of the bony segments of the spinal column | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased internal diameter of tibia | reduced diameter of the central opening or hollow space that runs through the length of the tibia | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased internal diameter of tibia | reduced cross-sectional distance that extends from one lateral edge of the tibia long bone marrow cavity, through its center and to the opposite lateral edge of the bone marrow cavity through the mid point of the tibia | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased internal diameter of tibia | reduced width of the cross-sectional distance that extends from one lateral edge of the tibia, through its center and to the opposite lateral edge | 3 | 2 | 2 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased internal diameter of tibia | reduced width of the inner cross-sectional distance that extends from one lateral edge of the tibia, through its center and to the opposite lateral edge | 3 | 2 | 2 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal skeletal maturation | abnormal development or growth of bones | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal skeletal maturation | any anomaly in the series of characteristic changes in size, shape, and calcification occuring in the skeleton from fetal life until puberty that result in the skeleton reaching its full maturity | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal skeletal maturation | any anomaly in the process of skeletal maturation | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | circular as it fails to explicitly define skeletal maturation and the term label appears in its own definition |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal skeletal maturation | any anomaly in the process that results in a bone reaching its fully functional state | 1 | 1 | 1 | 5 | RAG | gpt-4 | misleading as it fails to explictly define skeletal maturation as a series of morphological (rather than physiological) changes during development |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | premature skeletal maturation | earlier than normal development of bone tissue | 1 | 1 | 1 | 5 | RAG | gpt-4 | misleading; looks like this definition belongs to a higher level term such as "premature skeletal development", if present |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | premature skeletal maturation | earlier than expected age at which the skeleton reaches specific stages of maturation | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | premature skeletal maturation | earlier than normal occurrence of the physical changes associated with bone tissue development | 3 | 2 | 2 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | premature skeletal maturation | early development and maturation of the skeletal system | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal spontaneous fetal mouth movement | anomaly in the spontaneous movement or stillness of the fetus's mouth while in the womb | 1 | 1 | 1 | 5 | RAG | gpt-4 | stillness should not be part of this definition |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal spontaneous fetal mouth movement | any anomaly in the spontaneous neuromuscular movements of the mandible and tongue prior to birth | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal spontaneous fetal mouth movement | atypical movement of the mouth in a fetus | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | biologically valid but misses key differentia such as "spontaneous" and "neuromuscular movements of mandible and tongue" |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal spontaneous fetal mouth movement | unexpected and uncontrolled movements of the fetus in utero, particularly those that occur spontaneously without any apparent stimulus | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | definition is wong; not specific to fetal mouth |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal macropinocytosis | anomaly in the ability of cells to take up large volumes of extracellular fluid | 3 | 2 | 2 | 5 | RAG | nous-hermes-13b | biologically valid but misses multiple key differentia; this is a process rather than an ability; also, process is ambiguously stated with no mention of what macropinosomes are or how they are formed |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal macropinocytosis | any anomaly in the endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size | 5 | 5 | 5 | 5 | curator | human | highly precise and includes key elements of the process |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal macropinocytosis | anomaly in the process by which cells take up extracellular fluid and its contents | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal macropinocytosis | anomaly in the process by which large volumes of extracellular fluid are internalized | 3 | 2 | 2 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased female germ cell apoptosis | increase in the number of female germ cells undergoing programmed cell death | 5 | 5 | 5 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased female germ cell apoptosis | increase in the number of female germ cells undergoing programmed cell death | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased female germ cell apoptosis | increase in the number of female germ cells undergoing programmed cell death | 5 | 5 | 5 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased female germ cell apoptosis | increase in the number of female germ cells undergoing programmed cell death | 5 | 5 | 5 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal urine xanthine level | alteration in the normal concentration of xanthine in the urine | 3 | 2 | 2 | 5 | RAG | gpt-4 | biologically valid but ambiguous and circular as it fails to explicitly define what xanthine is and the term label appears in its own definition; this is the first instance of a xanthine term under AbnormalUrineHomeostasis, so a definition is required |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal urine xanthine level | any anomaly in the amount in the urine of xanthine (2,6-dihydroxypurine), a purine that is formed in the metabolic breakdown of guanine but is not present in nucleic acids | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal urine xanthine level | anomaly in the amount of xanthine present in the urine | 3 | 2 | 2 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal urine xanthine level | any abnormal amount of xanthine in the urine | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased urine xanthine level | a reduced amount of xanthine in the urine compared to the normal state | 5 | 3 | 4 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased urine xanthine level | a reduced amount of xanthine in the urine compared to the normal state | 5 | 3 | 4 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased urine xanthine level | low concentration of xanthine in the urine | 4 | 3 | 3 | 5 | RAG | gpt-3.5-turbo | Note: long standing issue of distinguishing level vs concentration vs amount |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased urine xanthine level | reduced concentration of xanthines in the urine | 3 | 2 | 2 | 5 | RAG | nous-hermes-13b | biologically valid but uses pluralized ("xanthines") rather than singular form which varies from standard style |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating hypoxanthine level | less than normal amount of hypoxanthine, a naturally occurring purine, in the blood | 1 | 1 | 1 | 5 | RAG | gpt-4 | wrong and misleading; hypoxanthine is a purine *derivative* |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating hypoxanthine level | a reduced amount of hypoxanthine in the blood compared to the normal state | 5 | 3 | 4 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating hypoxanthine level | less than the normal amount of hypoxanthine in the blood | 4 | 3 | 4 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating hypoxanthine level | lower amount per unit of blood of hypoxanthine, a naturally occurring purine derivative | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | definition should be broader, in general, "level" is (intended to be) used synonymously with "amount", whereas concentration is more specific; also, no need to include a nested definition of hypoxanthine, as it should be already defined in the parent term |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating hypoxanthine level | greater than normal concentration of hypoxanthine in the blood | 4 | 3 | 3 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating hypoxanthine level | an increased amount of hypoxanthine in the blood compared to the normal state | 5 | 4 | 4 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating hypoxanthine level | greater than normal level of hypoxanthine in the blood | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | circular; would prefer to use "amount" rather than "level" in the definition |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating hypoxanthine level | increase in the amount per unit of blood of hypoxanthine, a purine nucleotide that is formed from degradation of DNA | 1 | 1 | 1 | 4 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal circulating xanthine level | anomaly in the amount of xanthine in the blood | 3 | 2 | 2 | 5 | RAG | gpt-4 | biologically valid but ambiguous and circular as it fails to explicitly define what xanthine is and the term label appears in its own definition; this is the first instance of a xanthine term under AbnormalBloodHomeostasis, so a definition is required |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal circulating xanthine level | anomaly in the amount of xanthine in the blood | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | biologically valid but ambiguous and circular as it fails to explicitly define what xanthine is and the term label appears in its own definition; this is the first instance of a xanthine term under AbnormalBloodHomeostasis, so a definition is required |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal circulating xanthine level | any anomaly in the amount in the blood of xanthine (2,6-dihydroxypurine), a purine that is formed in the metabolic breakdown of guanine but is not present in nucleic acids | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal circulating xanthine level | anomaly in the amount per unit of blood of xanthine, a purine base that is formed from hypoxanthine and is excreted by the kidneys | 2 | 2 | 2 | 4 | RAG | nous-hermes-13b | I think that xanthine can be formed from more than one precursors, not just from hypoxanthine, but I am not sure what applies to mammals; need to do more reearch |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating xanthine level | reduced concentration in the blood of xanthine, a purine base that is a metabolic product of purine nucleotide degradation | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | no need to include a nested definition of xanthine, as it should be already defined in the parent term AbnormalCirculatingXanthineLevel |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating xanthine level | a reduced amount of xanthine in the blood compared to the normal state | 5 | 3 | 4 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating xanthine level | reduction in the amount per unit of blood of xanthine, a purine base found in coffee and tea | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | definition does not fall within the scope of the MP ontology |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased circulating xanthine level | reduction in the amount per unit of blood of xanthine, a purine base found in most human body tissues and fluids | 1 | 1 | 1 | 5 | RAG | gpt-4 | definition does not fall within the scope of the MP ontology; too human-specific |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating xanthine level | elevated concentration of xanthine in the blood | 4 | 3 | 3 | 5 | RAG | gpt-3.5-turbo | Note: long standing issue of distinguishing level vs concentration vs amount |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating xanthine level | an increased amount of xanthine in the blood compared to the normal state | 5 | 3 | 4 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating xanthine level | increase in the amount per unit of blood of xanthine | 3 | 2 | 2 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased circulating xanthine level | increased concentration in the blood of xanthine | 4 | 3 | 3 | 5 | RAG | nous-hermes-13b | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased oval window size | any structural anomaly of the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | definition is too broad; it belongs to the parent term AbnormalOvalWindowMorphology |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased oval window size | less than average size of the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes | 4 | 3 | 3 | 5 | curator | human | overall score is acceptable but no need to embed part of the definition contained in parent term AbnormalOvalWindowMorphology |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased oval window size | decreased size of the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes | 4 | 3 | 3 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | decreased oval window size | reduced size of the oval window, an opening in the inner ear leading into the vestibule | 3 | 2 | 2 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | absent prenatal movement | absence or reduction in fetal movements during pregnancy | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | highly incorrect and misleading as "absent" is intended to represent "complete absence" or "loss of all", not a reduction in movements |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | absent prenatal movement | absence of any movements of a developing organism within the uterus | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | absent prenatal movement | lack of movement of a fetus within the womb | 4 | 2 | 3 | 5 | RAG | gpt-4 | definition fails to specify complete lack of any movement and does not really define fetus; also prefer uterus to womb |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | absent prenatal movement | lack of movement of the fetus while in the womb | 4 | 2 | 3 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased visual acuity | enhanced ability to distinguish small details visually | 3 | 2 | 2 | 5 | RAG | gpt-4 | circular; would prefer "with precision" or "clearly" to "visually" |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased visual acuity | gain in visual acuity or increased ability to distinguish small details | 4 | 4 | 4 | 5 | curator | human | biologically valid, but misses key element of precicion or clarity |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased visual acuity | increase in visual acuity or ability to distinguish small details | 4 | 4 | 4 | 5 | RAG | gpt-3.5-turbo | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | increased visual acuity | loss of visual acuity or ability to distinguish small details | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | definition is wrong; it really belongs to sibling term "decreased visual acuity" if present |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal cornea size | deviation from the average range of cornea size | 4 | 4 | 4 | 4 | RAG | gpt-3.5-turbo | not wrong, but I think cornea size is species-specific and depends on age, habitat etc |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal cornea size | deviation from the average range of cornea size for a given organism | 5 | 5 | 5 | 5 | RAG | gpt-4 | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal cornea size | deviation from the average range of cornea size for a given organism | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal cornea size | deviation from the average range of eye size for a given organism | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | wrong; cornea size is not the same as eye size |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal mouth shape | any anomaly in the characteristic surface outline or contour of the mouth | 4 | 4 | 4 | 4 | RAG | gpt-3.5-turbo | not wrong but missing key element that mouth shape is species-specific (depends on food source, dentition etc.) |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal mouth shape | any anomaly in the characteristic surface outline or contour of the mouth of an organism | 5 | 5 | 5 | 5 | curator | human | null |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal mouth shape | any structural anomaly of the mouth shape | 3 | 2 | 2 | 5 | RAG | gpt-4 | circular, fails to explictly define shape |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | abnormal mouth shape | any structural anomaly of the proximal portion of the digestive tract containing the oral cavity and bounded by the oral opening | 1 | 1 | 1 | 5 | RAG | nous-hermes-13b | definition is too broad; it belongs to the parent term AbnormalMouthMorphology |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | open mouth | jaw is not closed, causing the mouth to be open | 3 | 2 | 2 | 5 | RAG | gpt-3.5-turbo | biologically valid, but circular; typically, MP definitions describe the phenotypic outcome, not the cause |
58bb119c35513a451d24dc20ef0e9031ec85b35bfc919d263e7e5d9868909cb5 | mp | open mouth | abnormal presence of a permanently or nearly permanently opened mouth | 4 | 5 | 4 | 5 | curator | human | unavoidably circular in that the term is included in its own definition but includes key elements rendering overall utility very good |