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{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_raw_counts'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '14', '20', '351', '378', '405']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'labels'}, {'id': '13', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'words_said'}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'for_statement', 'children': ['21', '22', '25']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'parsed_response'}, {'id': '25', 'type': 'block', 'children': ['26', '32', '36', '105']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '35', 'type': 'False', 'children': []}; {'id': '36', 'type': 'if_statement', 'children': ['37', '42', '89']}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '41'], 'value': '=='}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '41', 'type': 'string', 'children': [], 'value': '"PHONETIC"'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '46', 'type': 'parenthesized_expression', 'children': ['47']}, {'id': '47', 'type': 'boolean_operator', 'children': ['48', '80'], 'value': 'and'}; {'id': '48', 'type': 'boolean_operator', 'children': ['49', '73'], 'value': 'and'}, {'id': '49', 'type': 'boolean_operator', 'children': ['50', '70'], 'value': 'and'}; {'id': '50', 'type': 'boolean_operator', 'children': ['51', '67'], 'value': 'and'}, {'id': '51', 'type': 'boolean_operator', 'children': ['52', '64'], 'value': 'and'}; {'id': '52', 'type': 'boolean_operator', 'children': ['53', '61'], 'value': 'and'}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'letter'}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'not'}; {'id': '62', 'type': 'string', 'children': [], 'value': '"T_"'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'not'}, {'id': '65', 'type': 'string', 'children': [], 'value': '"E_"'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '67', 'type': 'comparison_operator', 'children': ['68', '69'], 'value': 'not'}; {'id': '68', 'type': 'string', 'children': [], 'value': '"!"'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '70', 'type': 'comparison_operator', 'children': ['71', '72'], 'value': 'not'}, {'id': '71', 'type': 'string', 'children': [], 'value': '"FILLEDPAUSE_"'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '73', 'type': 'not_operator', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'endswith'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'string', 'children': [], 'value': "'-'"}; {'id': '80', 'type': 'comparison_operator', 'children': ['81', '86'], 'value': 'in'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '85', 'type': 'argument_list', 'children': []}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'english_words'}, {'id': '89', 'type': 'elif_clause', 'children': ['90', '95']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '94'], 'value': '=='}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '94', 'type': 'string', 'children': [], 'value': '"SEMANTIC"'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'assignment', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '99', 'type': 'parenthesized_expression', 'children': ['100']}; {'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': 'in'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'permissible_words'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '107', '209', '243', '273', '307']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '107', 'type': 'block', 'children': ['108', '116', '124', '195', '202']}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'augmented_assignment', 'children': ['110', '115'], 'value': '+='}; {'id': '110', 'type': 'subscript', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '114', 'type': 'string', 'children': [], 'value': "'COUNT_total_words'"}, {'id': '115', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'augmented_assignment', 'children': ['118', '123'], 'value': '+='}; {'id': '118', 'type': 'subscript', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '122', 'type': 'string', 'children': [], 'value': "'COUNT_permissible_words'"}, {'id': '123', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '124', 'type': 'if_statement', 'children': ['125', '134', '150', '186']}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '127', 'type': 'generator_expression', 'children': ['128', '131']}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': '=='}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '131', 'type': 'for_in_clause', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'words_said'}; {'id': '134', 'type': 'block', 'children': ['135', '143']}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'augmented_assignment', 'children': ['137', '142'], 'value': '+='}, {'id': '137', 'type': 'subscript', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '141', 'type': 'string', 'children': [], 'value': "'COUNT_exact_repetitions'"}; {'id': '142', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'labels'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': "'EXACT REPETITION'"}; {'id': '150', 'type': 'elif_clause', 'children': ['151', '170']}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '153', 'type': 'generator_expression', 'children': ['154', '167']}; {'id': '154', 'type': 'comparison_operator', 'children': ['155', '161'], 'value': '=='}, {'id': '155', 'type': 'call', 'children': ['156', '159']}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'stemmer'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'stem'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'stemmer'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'stem'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '167', 'type': 'for_in_clause', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'words_said'}; {'id': '170', 'type': 'block', 'children': ['171', '179']}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'augmented_assignment', 'children': ['173', '178'], 'value': '+='}, {'id': '173', 'type': 'subscript', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '177', 'type': 'string', 'children': [], 'value': "'COUNT_stem_repetitions'"}; {'id': '178', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'labels'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'string', 'children': [], 'value': "'STEM REPETITION'"}; {'id': '186', 'type': 'else_clause', 'children': ['187']}, {'id': '187', 'type': 'block', 'children': ['188']}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'call', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '193', 'type': 'argument_list', 'children': ['194']}; {'id': '194', 'type': 'string', 'children': [], 'value': "'PERMISSIBLE WORD'"}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'words_said'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '202', 'type': 'expression_statement', 'children': ['203']}, {'id': '203', 'type': 'call', 'children': ['204', '207']}; {'id': '204', 'type': 'attribute', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'words'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '209', 'type': 'elif_clause', 'children': ['210', '220']}; {'id': '210', 'type': 'call', 'children': ['211', '218']}, {'id': '211', 'type': 'attribute', 'children': ['212', '217']}; {'id': '212', 'type': 'call', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '216', 'type': 'argument_list', 'children': []}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'string', 'children': [], 'value': "'e_'"}; {'id': '220', 'type': 'block', 'children': ['221', '229', '236']}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'augmented_assignment', 'children': ['223', '228'], 'value': '+='}, {'id': '223', 'type': 'subscript', 'children': ['224', '227']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '227', 'type': 'string', 'children': [], 'value': "'COUNT_examiner_words'"}; {'id': '228', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'call', 'children': ['231', '234']}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '234', 'type': 'argument_list', 'children': ['235']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'call', 'children': ['238', '241']}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'string', 'children': [], 'value': "'EXAMINER WORD'"}, {'id': '243', 'type': 'elif_clause', 'children': ['244', '250']}; {'id': '244', 'type': 'call', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'endswith'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'string', 'children': [], 'value': "'-'"}; {'id': '250', 'type': 'block', 'children': ['251', '259', '266']}, {'id': '251', 'type': 'expression_statement', 'children': ['252']}; {'id': '252', 'type': 'augmented_assignment', 'children': ['253', '258'], 'value': '+='}, {'id': '253', 'type': 'subscript', 'children': ['254', '257']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '257', 'type': 'string', 'children': [], 'value': "'COUNT_word_fragments'"}; {'id': '258', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'call', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'call', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'string', 'children': [], 'value': "'WORD FRAGMENT'"}, {'id': '273', 'type': 'elif_clause', 'children': ['274', '284']}; {'id': '274', 'type': 'call', 'children': ['275', '282']}, {'id': '275', 'type': 'attribute', 'children': ['276', '281']}; {'id': '276', 'type': 'call', 'children': ['277', '280']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '280', 'type': 'argument_list', 'children': []}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '282', 'type': 'argument_list', 'children': ['283']}, {'id': '283', 'type': 'string', 'children': [], 'value': "'filledpause'"}; {'id': '284', 'type': 'block', 'children': ['285', '293', '300']}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'augmented_assignment', 'children': ['287', '292'], 'value': '+='}, {'id': '287', 'type': 'subscript', 'children': ['288', '291']}; {'id': '288', 'type': 'attribute', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '291', 'type': 'string', 'children': [], 'value': "'COUNT_filled_pauses'"}; {'id': '292', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '293', 'type': 'expression_statement', 'children': ['294']}; {'id': '294', 'type': 'call', 'children': ['295', '298']}, {'id': '295', 'type': 'attribute', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '298', 'type': 'argument_list', 'children': ['299']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '300', 'type': 'expression_statement', 'children': ['301']}, {'id': '301', 'type': 'call', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'string', 'children': [], 'value': "'FILLED PAUSE'"}, {'id': '307', 'type': 'elif_clause', 'children': ['308', '320']}; {'id': '308', 'type': 'comparison_operator', 'children': ['309', '314'], 'value': 'not'}, {'id': '309', 'type': 'call', 'children': ['310', '313']}; {'id': '310', 'type': 'attribute', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '313', 'type': 'argument_list', 'children': []}; {'id': '314', 'type': 'list', 'children': ['315', '316', '317', '318', '319'], 'value': "['!sil', 't_noise', 't_cough', 't_lipsmack', 't_breath']"}, {'id': '315', 'type': 'string', 'children': [], 'value': "'!sil'"}; {'id': '316', 'type': 'string', 'children': [], 'value': "'t_noise'"}, {'id': '317', 'type': 'string', 'children': [], 'value': "'t_cough'"}; {'id': '318', 'type': 'string', 'children': [], 'value': "'t_lipsmack'"}, {'id': '319', 'type': 'string', 'children': [], 'value': "'t_breath'"}; {'id': '320', 'type': 'block', 'children': ['321', '329', '337', '344']}, {'id': '321', 'type': 'expression_statement', 'children': ['322']}; {'id': '322', 'type': 'augmented_assignment', 'children': ['323', '328'], 'value': '+='}, {'id': '323', 'type': 'subscript', 'children': ['324', '327']}; {'id': '324', 'type': 'attribute', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '327', 'type': 'string', 'children': [], 'value': "'COUNT_total_words'"}; {'id': '328', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '329', 'type': 'expression_statement', 'children': ['330']}; {'id': '330', 'type': 'augmented_assignment', 'children': ['331', '336'], 'value': '+='}, {'id': '331', 'type': 'subscript', 'children': ['332', '335']}; {'id': '332', 'type': 'attribute', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '335', 'type': 'string', 'children': [], 'value': "'COUNT_asides'"}; {'id': '336', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '337', 'type': 'expression_statement', 'children': ['338']}; {'id': '338', 'type': 'call', 'children': ['339', '342']}, {'id': '339', 'type': 'attribute', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '342', 'type': 'argument_list', 'children': ['343']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '344', 'type': 'expression_statement', 'children': ['345']}, {'id': '345', 'type': 'call', 'children': ['346', '349']}; {'id': '346', 'type': 'attribute', 'children': ['347', '348']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '349', 'type': 'argument_list', 'children': ['350']}; {'id': '350', 'type': 'string', 'children': [], 'value': "'ASIDE'"}, {'id': '351', 'type': 'if_statement', 'children': ['352', '356']}; {'id': '352', 'type': 'not_operator', 'children': ['353']}, {'id': '353', 'type': 'attribute', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'quiet'}; {'id': '356', 'type': 'block', 'children': ['357', '359', '361']}, {'id': '357', 'type': 'expression_statement', 'children': ['358']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '359', 'type': 'print_statement', 'children': ['360']}; {'id': '360', 'type': 'string', 'children': [], 'value': '"Labels:"'}, {'id': '361', 'type': 'expression_statement', 'children': ['362']}; {'id': '362', 'type': 'call', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'print_table'}; {'id': '364', 'type': 'argument_list', 'children': ['365']}, {'id': '365', 'type': 'list_comprehension', 'children': ['366', '369']}; {'id': '366', 'type': 'tuple', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'label'}, {'id': '369', 'type': 'for_in_clause', 'children': ['370', '373']}; {'id': '370', 'type': 'pattern_list', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'label'}, {'id': '373', 'type': 'call', 'children': ['374', '375']}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '375', 'type': 'argument_list', 'children': ['376', '377']}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'words'}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '378', 'type': 'expression_statement', 'children': ['379']}, {'id': '379', 'type': 'assignment', 'children': ['380', '385', '386']}; {'id': '380', 'type': 'subscript', 'children': ['381', '384']}, {'id': '381', 'type': 'attribute', 'children': ['382', '383']}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '384', 'type': 'string', 'children': [], 'value': "'COUNT_unique_permissible_words'"}, {'id': '385', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '386', 'type': 'binary_operator', 'children': ['387', '399', '400'], 'value': '-'}, {'id': '387', 'type': 'binary_operator', 'children': ['388', '393', '394'], 'value': '-'}; {'id': '388', 'type': 'subscript', 'children': ['389', '392']}, {'id': '389', 'type': 'attribute', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '392', 'type': 'string', 'children': [], 'value': "'COUNT_permissible_words'"}, {'id': '393', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '394', 'type': 'subscript', 'children': ['395', '398']}, {'id': '395', 'type': 'attribute', 'children': ['396', '397']}; {'id': '396', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '397', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '398', 'type': 'string', 'children': [], 'value': "'COUNT_exact_repetitions'"}, {'id': '399', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '400', 'type': 'subscript', 'children': ['401', '404']}, {'id': '401', 'type': 'attribute', 'children': ['402', '403']}; {'id': '402', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '403', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '404', 'type': 'string', 'children': [], 'value': "'COUNT_stem_repetitions'"}, {'id': '405', 'type': 'if_statement', 'children': ['406', '410']}; {'id': '406', 'type': 'not_operator', 'children': ['407']}, {'id': '407', 'type': 'attribute', 'children': ['408', '409']}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '409', 'type': 'identifier', 'children': [], 'value': 'quiet'}; {'id': '410', 'type': 'block', 'children': ['411', '413', '415', '432', '438']}, {'id': '411', 'type': 'expression_statement', 'children': ['412']}; {'id': '412', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '413', 'type': 'print_statement', 'children': ['414']}; {'id': '414', 'type': 'string', 'children': [], 'value': '"Counts:"'}, {'id': '415', 'type': 'expression_statement', 'children': ['416']}; {'id': '416', 'type': 'assignment', 'children': ['417', '418']}, {'id': '417', 'type': 'identifier', 'children': [], 'value': 'collection_measures'}; {'id': '418', 'type': 'list_comprehension', 'children': ['419', '420', '425']}, {'id': '419', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '420', 'type': 'for_in_clause', 'children': ['421', '422']}, {'id': '421', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '422', 'type': 'attribute', 'children': ['423', '424']}, {'id': '423', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '424', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '425', 'type': 'if_clause', 'children': ['426']}; {'id': '426', 'type': 'call', 'children': ['427', '430']}, {'id': '427', 'type': 'attribute', 'children': ['428', '429']}; {'id': '428', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '429', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '430', 'type': 'argument_list', 'children': ['431']}, {'id': '431', 'type': 'string', 'children': [], 'value': '"COUNT_"'}; {'id': '432', 'type': 'expression_statement', 'children': ['433']}, {'id': '433', 'type': 'call', 'children': ['434', '437']}; {'id': '434', 'type': 'attribute', 'children': ['435', '436']}, {'id': '435', 'type': 'identifier', 'children': [], 'value': 'collection_measures'}; {'id': '436', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '437', 'type': 'argument_list', 'children': []}; {'id': '438', 'type': 'if_statement', 'children': ['439', '443']}, {'id': '439', 'type': 'not_operator', 'children': ['440']}; {'id': '440', 'type': 'attribute', 'children': ['441', '442']}, {'id': '441', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '442', 'type': 'identifier', 'children': [], 'value': 'quiet'}, {'id': '443', 'type': 'block', 'children': ['444']}; {'id': '444', 'type': 'expression_statement', 'children': ['445']}, {'id': '445', 'type': 'call', 'children': ['446', '447']}; {'id': '446', 'type': 'identifier', 'children': [], 'value': 'print_table'}, {'id': '447', 'type': 'argument_list', 'children': ['448']}; {'id': '448', 'type': 'list_comprehension', 'children': ['449', '459']}, {'id': '449', 'type': 'tuple', 'children': ['450', '451']}; {'id': '450', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '451', 'type': 'call', 'children': ['452', '453']}; {'id': '452', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '453', 'type': 'argument_list', 'children': ['454']}; {'id': '454', 'type': 'subscript', 'children': ['455', '458']}, {'id': '455', 'type': 'attribute', 'children': ['456', '457']}; {'id': '456', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '457', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '458', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '459', 'type': 'for_in_clause', 'children': ['460', '461']}; {'id': '460', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '461', 'type': 'identifier', 'children': [], 'value': 'collection_measures'} | def get_raw_counts(self):
words = []
labels = []
words_said = set()
for unit in self.parsed_response:
word = unit.text
test = False
if self.type == "PHONETIC":
test = (word.startswith(self.letter) and
"T_" not in word and "E_" not in word and "!" not in word and
"FILLEDPAUSE_" not in word and
not word.endswith('-') and
word.lower() in self.english_words)
elif self.type == "SEMANTIC":
test = (word in self.permissible_words)
if test:
self.measures['COUNT_total_words'] += 1
self.measures['COUNT_permissible_words'] += 1
if any(word == w for w in words_said):
self.measures['COUNT_exact_repetitions'] += 1
labels.append('EXACT REPETITION')
elif any(stemmer.stem(word) == stemmer.stem(w) for w in words_said):
self.measures['COUNT_stem_repetitions'] += 1
labels.append('STEM REPETITION')
else:
labels.append('PERMISSIBLE WORD')
words_said.add(word)
words.append(word)
elif word.lower().startswith('e_'):
self.measures['COUNT_examiner_words'] += 1
words.append(word)
labels.append('EXAMINER WORD')
elif word.endswith('-'):
self.measures['COUNT_word_fragments'] += 1
words.append(word)
labels.append('WORD FRAGMENT')
elif word.lower().startswith('filledpause'):
self.measures['COUNT_filled_pauses'] += 1
words.append(word)
labels.append('FILLED PAUSE')
elif word.lower() not in ['!sil', 't_noise', 't_cough', 't_lipsmack', 't_breath']:
self.measures['COUNT_total_words'] += 1
self.measures['COUNT_asides'] += 1
words.append(word)
labels.append('ASIDE')
if not self.quiet:
print
print "Labels:"
print_table([(word,label) for word,label in zip(words,labels)])
self.measures['COUNT_unique_permissible_words'] = \
self.measures['COUNT_permissible_words'] - \
self.measures['COUNT_exact_repetitions'] - \
self.measures['COUNT_stem_repetitions']
if not self.quiet:
print
print "Counts:"
collection_measures = [x for x in self.measures if x.startswith("COUNT_")]
collection_measures.sort()
if not self.quiet:
print_table([(k, str(self.measures[k])) for k in collection_measures]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute_similarity_score'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'unit1'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'unit2'}, {'id': '7', 'type': 'block', 'children': ['8', '380']}; {'id': '8', 'type': 'if_statement', 'children': ['9', '14', '224']}, {'id': '9', 'type': 'comparison_operator', 'children': ['10', '13'], 'value': '=='}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '13', 'type': 'string', 'children': [], 'value': '"PHONETIC"'}; {'id': '14', 'type': 'block', 'children': ['15', '21', '27']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'unit1'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'phonetic_representation'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'word2'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'unit2'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'phonetic_representation'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '33', '178']}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '32'], 'value': '=='}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"phone"'}, {'id': '33', 'type': 'block', 'children': ['34', '48', '69', '78', '166', '176']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '39']}; {'id': '36', 'type': 'pattern_list', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'word1_length'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'word2_length'}, {'id': '39', 'type': 'expression_list', 'children': ['40', '44']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'word2'}; {'id': '48', 'type': 'if_statement', 'children': ['49', '52']}, {'id': '49', 'type': 'comparison_operator', 'children': ['50', '51'], 'value': '>'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'word1_length'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'word2_length'}; {'id': '52', 'type': 'block', 'children': ['53', '61']}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '58']}, {'id': '55', 'type': 'pattern_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'word1'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'word2'}; {'id': '58', 'type': 'expression_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'word2'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'word1'}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '66']}, {'id': '63', 'type': 'pattern_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'word1_length'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'word2_length'}; {'id': '66', 'type': 'expression_list', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'word2_length'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'word1_length'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'binary_operator', 'children': ['76', '77'], 'value': '+'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'word1_length'}, {'id': '77', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '78', 'type': 'for_statement', 'children': ['79', '80', '87']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '84']}, {'id': '83', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '84', 'type': 'binary_operator', 'children': ['85', '86'], 'value': '+'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'word2_length'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '87', 'type': 'block', 'children': ['88', '102']}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '93']}; {'id': '90', 'type': 'pattern_list', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'previous'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '93', 'type': 'expression_list', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '95', 'type': 'binary_operator', 'children': ['96', '98'], 'value': '+'}; {'id': '96', 'type': 'list', 'children': ['97'], 'value': '[i]'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '98', 'type': 'binary_operator', 'children': ['99', '101'], 'value': '*'}, {'id': '99', 'type': 'list', 'children': ['100'], 'value': '[0]'}; {'id': '100', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'word1_length'}; {'id': '102', 'type': 'for_statement', 'children': ['103', '104', '111']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '108']}, {'id': '107', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '108', 'type': 'binary_operator', 'children': ['109', '110'], 'value': '+'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'word1_length'}; {'id': '110', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '111', 'type': 'block', 'children': ['112', '130', '138', '155']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '117']}; {'id': '114', 'type': 'pattern_list', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'delete'}, {'id': '117', 'type': 'expression_list', 'children': ['118', '123']}; {'id': '118', 'type': 'binary_operator', 'children': ['119', '122'], 'value': '+'}, {'id': '119', 'type': 'subscript', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'previous'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '122', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '123', 'type': 'binary_operator', 'children': ['124', '129'], 'value': '+'}; {'id': '124', 'type': 'subscript', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '128'], 'value': '-'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '128', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '129', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'change'}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'previous'}, {'id': '135', 'type': 'binary_operator', 'children': ['136', '137'], 'value': '-'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '137', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '138', 'type': 'if_statement', 'children': ['139', '150']}, {'id': '139', 'type': 'comparison_operator', 'children': ['140', '145'], 'value': '!='}; {'id': '140', 'type': 'subscript', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '142', 'type': 'binary_operator', 'children': ['143', '144'], 'value': '-'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '144', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'word2'}, {'id': '147', 'type': 'binary_operator', 'children': ['148', '149'], 'value': '-'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '149', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '150', 'type': 'block', 'children': ['151']}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'augmented_assignment', 'children': ['153', '154'], 'value': '+='}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'change'}; {'id': '154', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '160']}, {'id': '157', 'type': 'subscript', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'current'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '162', 'type': 'argument_list', 'children': ['163', '164', '165']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'delete'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'change'}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'phonetic_similarity_score'}, {'id': '169', 'type': 'binary_operator', 'children': ['170', '171'], 'value': '-'}; {'id': '170', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '175'], 'value': '/'}; {'id': '172', 'type': 'subscript', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'current'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'word1_length'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'word2_length'}; {'id': '176', 'type': 'return_statement', 'children': ['177']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'phonetic_similarity_score'}; {'id': '178', 'type': 'elif_clause', 'children': ['179', '184']}, {'id': '179', 'type': 'comparison_operator', 'children': ['180', '183'], 'value': '=='}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}, {'id': '183', 'type': 'string', 'children': [], 'value': '"biphone"'}; {'id': '184', 'type': 'block', 'children': ['185', '222']}, {'id': '185', 'type': 'if_statement', 'children': ['186', '211', '216']}; {'id': '186', 'type': 'boolean_operator', 'children': ['187', '198'], 'value': 'or'}, {'id': '187', 'type': 'comparison_operator', 'children': ['188', '193'], 'value': '=='}; {'id': '188', 'type': 'subscript', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '190', 'type': 'slice', 'children': ['191', '192']}, {'id': '191', 'type': 'colon', 'children': []}; {'id': '192', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '193', 'type': 'subscript', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'word2'}, {'id': '195', 'type': 'slice', 'children': ['196', '197']}; {'id': '196', 'type': 'colon', 'children': []}, {'id': '197', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '198', 'type': 'comparison_operator', 'children': ['199', '205'], 'value': '=='}, {'id': '199', 'type': 'subscript', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'word1'}, {'id': '201', 'type': 'slice', 'children': ['202', '204']}; {'id': '202', 'type': 'unary_operator', 'children': ['203'], 'value': '-'}, {'id': '203', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '204', 'type': 'colon', 'children': []}, {'id': '205', 'type': 'subscript', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'word2'}, {'id': '207', 'type': 'slice', 'children': ['208', '210']}; {'id': '208', 'type': 'unary_operator', 'children': ['209'], 'value': '-'}, {'id': '209', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '210', 'type': 'colon', 'children': []}, {'id': '211', 'type': 'block', 'children': ['212']}; {'id': '212', 'type': 'expression_statement', 'children': ['213']}, {'id': '213', 'type': 'assignment', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'common_biphone_score'}, {'id': '215', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '216', 'type': 'else_clause', 'children': ['217']}, {'id': '217', 'type': 'block', 'children': ['218']}; {'id': '218', 'type': 'expression_statement', 'children': ['219']}, {'id': '219', 'type': 'assignment', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'common_biphone_score'}, {'id': '221', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '222', 'type': 'return_statement', 'children': ['223']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'common_biphone_score'}; {'id': '224', 'type': 'elif_clause', 'children': ['225', '230']}, {'id': '225', 'type': 'comparison_operator', 'children': ['226', '229'], 'value': '=='}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '229', 'type': 'string', 'children': [], 'value': '"SEMANTIC"'}; {'id': '230', 'type': 'block', 'children': ['231', '237', '243']}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'assignment', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'unit1'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'assignment', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'word2'}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'unit2'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '243', 'type': 'if_statement', 'children': ['244', '249', '328']}; {'id': '244', 'type': 'comparison_operator', 'children': ['245', '248'], 'value': '=='}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}; {'id': '248', 'type': 'string', 'children': [], 'value': '"lsa"'}, {'id': '249', 'type': 'block', 'children': ['250', '258', '266', '285', '301', '317', '326']}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'assignment', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'w1_vec'}, {'id': '253', 'type': 'subscript', 'children': ['254', '257']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'term_vectors'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '258', 'type': 'expression_statement', 'children': ['259']}, {'id': '259', 'type': 'assignment', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'w2_vec'}, {'id': '261', 'type': 'subscript', 'children': ['262', '265']}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'term_vectors'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'word2'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'assignment', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'dot'}, {'id': '269', 'type': 'call', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'list_comprehension', 'children': ['273', '276']}, {'id': '273', 'type': 'binary_operator', 'children': ['274', '275'], 'value': '*'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'w1'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'w2'}; {'id': '276', 'type': 'for_in_clause', 'children': ['277', '280']}, {'id': '277', 'type': 'pattern_list', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'w1'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'w2'}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '282', 'type': 'argument_list', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'w1_vec'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'w2_vec'}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'assignment', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'norm1'}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'sqrt'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'call', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '293', 'type': 'argument_list', 'children': ['294']}; {'id': '294', 'type': 'list_comprehension', 'children': ['295', '298']}, {'id': '295', 'type': 'binary_operator', 'children': ['296', '297'], 'value': '*'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '298', 'type': 'for_in_clause', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'w1_vec'}, {'id': '301', 'type': 'expression_statement', 'children': ['302']}; {'id': '302', 'type': 'assignment', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'norm2'}; {'id': '304', 'type': 'call', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'sqrt'}; {'id': '306', 'type': 'argument_list', 'children': ['307']}, {'id': '307', 'type': 'call', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '309', 'type': 'argument_list', 'children': ['310']}; {'id': '310', 'type': 'list_comprehension', 'children': ['311', '314']}, {'id': '311', 'type': 'binary_operator', 'children': ['312', '313'], 'value': '*'}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'w'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '314', 'type': 'for_in_clause', 'children': ['315', '316']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'w2_vec'}, {'id': '317', 'type': 'expression_statement', 'children': ['318']}; {'id': '318', 'type': 'assignment', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'semantic_relatedness_score'}; {'id': '320', 'type': 'binary_operator', 'children': ['321', '322'], 'value': '/'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'dot'}; {'id': '322', 'type': 'parenthesized_expression', 'children': ['323']}, {'id': '323', 'type': 'binary_operator', 'children': ['324', '325'], 'value': '*'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'norm1'}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'norm2'}; {'id': '326', 'type': 'return_statement', 'children': ['327']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'semantic_relatedness_score'}; {'id': '328', 'type': 'elif_clause', 'children': ['329', '334']}, {'id': '329', 'type': 'comparison_operator', 'children': ['330', '333'], 'value': '=='}; {'id': '330', 'type': 'attribute', 'children': ['331', '332']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}, {'id': '333', 'type': 'string', 'children': [], 'value': '"custom"'}; {'id': '334', 'type': 'block', 'children': ['335', '378']}, {'id': '335', 'type': 'try_statement', 'children': ['336', '347']}; {'id': '336', 'type': 'block', 'children': ['337']}, {'id': '337', 'type': 'expression_statement', 'children': ['338']}; {'id': '338', 'type': 'assignment', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'similarity'}; {'id': '340', 'type': 'subscript', 'children': ['341', '344']}, {'id': '341', 'type': 'attribute', 'children': ['342', '343']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'custom_similarity_scores'}; {'id': '344', 'type': 'tuple', 'children': ['345', '346']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'word2'}, {'id': '347', 'type': 'except_clause', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'KeyError'}, {'id': '349', 'type': 'block', 'children': ['350']}; {'id': '350', 'type': 'try_statement', 'children': ['351', '362']}, {'id': '351', 'type': 'block', 'children': ['352']}; {'id': '352', 'type': 'expression_statement', 'children': ['353']}, {'id': '353', 'type': 'assignment', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'similarity'}, {'id': '355', 'type': 'subscript', 'children': ['356', '359']}; {'id': '356', 'type': 'attribute', 'children': ['357', '358']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'custom_similarity_scores'}, {'id': '359', 'type': 'tuple', 'children': ['360', '361']}; {'id': '360', 'type': 'identifier', 'children': [], 'value': 'word2'}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '362', 'type': 'except_clause', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'KeyError'}; {'id': '364', 'type': 'block', 'children': ['365']}, {'id': '365', 'type': 'if_statement', 'children': ['366', '369', '374']}; {'id': '366', 'type': 'comparison_operator', 'children': ['367', '368'], 'value': '=='}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'word1'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'word2'}, {'id': '369', 'type': 'block', 'children': ['370']}; {'id': '370', 'type': 'return_statement', 'children': ['371']}, {'id': '371', 'type': 'attribute', 'children': ['372', '373']}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'same_word_similarity'}; {'id': '374', 'type': 'else_clause', 'children': ['375']}, {'id': '375', 'type': 'block', 'children': ['376']}; {'id': '376', 'type': 'return_statement', 'children': ['377']}, {'id': '377', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '378', 'type': 'return_statement', 'children': ['379']}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'similarity'}; {'id': '380', 'type': 'return_statement', 'children': ['381']}, {'id': '381', 'type': 'None', 'children': []} | def compute_similarity_score(self, unit1, unit2):
if self.type == "PHONETIC":
word1 = unit1.phonetic_representation
word2 = unit2.phonetic_representation
if self.current_similarity_measure == "phone":
word1_length, word2_length = len(word1), len(word2)
if word1_length > word2_length:
word1, word2 = word2, word1
word1_length, word2_length = word2_length, word1_length
current = range(word1_length + 1)
for i in range(1, word2_length + 1):
previous, current = current, [i] + [0] * word1_length
for j in range(1, word1_length + 1):
add, delete = previous[j] + 1, current[j - 1] + 1
change = previous[j - 1]
if word1[j - 1] != word2[i - 1]:
change += 1
current[j] = min(add, delete, change)
phonetic_similarity_score = 1 - current[word1_length] / word2_length
return phonetic_similarity_score
elif self.current_similarity_measure == "biphone":
if word1[:2] == word2[:2] or word1[-2:] == word2[-2:]:
common_biphone_score = 1
else:
common_biphone_score = 0
return common_biphone_score
elif self.type == "SEMANTIC":
word1 = unit1.text
word2 = unit2.text
if self.current_similarity_measure == "lsa":
w1_vec = self.term_vectors[word1]
w2_vec = self.term_vectors[word2]
dot = sum([w1*w2 for w1,w2 in zip(w1_vec, w2_vec)])
norm1 = sqrt(sum([w*w for w in w1_vec]))
norm2 = sqrt(sum([w*w for w in w2_vec]))
semantic_relatedness_score = dot/(norm1 * norm2)
return semantic_relatedness_score
elif self.current_similarity_measure == "custom":
try:
similarity = self.custom_similarity_scores[(word1,word2)]
except KeyError:
try:
similarity = self.custom_similarity_scores[(word2,word1)]
except KeyError:
if word1 == word2:
return self.same_word_similarity
else:
return 0
return similarity
return None |
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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parsed_response'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'for_statement', 'children': ['26', '29', '35']}; {'id': '26', 'type': 'pattern_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'other_unit'}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'parsed_response'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'if_statement', 'children': ['37', '40']}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': '!='}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '40', 'type': 'block', 'children': ['41', '47', '53']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'pair'}; {'id': '44', 'type': 'tuple', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'rev_pair'}; {'id': '50', 'type': 'tuple', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '53', 'type': 'if_statement', 'children': ['54', '61']}; {'id': '54', 'type': 'boolean_operator', 'children': ['55', '58'], 'value': 'and'}, {'id': '55', 'type': 'comparison_operator', 'children': ['56', '57'], 'value': 'not'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'pair'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'pairs'}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': 'not'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'rev_pair'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'pairs'}, {'id': '61', 'type': 'block', 'children': ['62', '72', '79', '86']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'score'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'compute_similarity_score'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'other_unit'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'pairs'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'pair'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'pairs'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'rev_pair'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'all_scores'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'score'}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'all_scores'}; {'id': '96', 'type': 'list_comprehension', 'children': ['97', '98', '101']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '98', 'type': 'for_in_clause', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'all_scores'}, {'id': '101', 'type': 'if_clause', 'children': ['102']}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': '!='}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'same_word_similarity'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '120']}, {'id': '109', 'type': 'subscript', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '113', 'type': 'binary_operator', 'children': ['114', '119'], 'value': '+'}; {'id': '114', 'type': 'binary_operator', 'children': ['115', '116'], 'value': '+'}, {'id': '115', 'type': 'string', 'children': [], 'value': '"COLLECTION_"'}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}, {'id': '119', 'type': 'string', 'children': [], 'value': '"_pairwise_similarity_score_mean"'}; {'id': '120', 'type': 'conditional_expression', 'children': ['121', '125', '126', '132'], 'value': 'if'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'get_mean'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'all_scores'}, {'id': '125', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '131'], 'value': '>'}, {'id': '127', 'type': 'call', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'pairs'}, {'id': '131', 'type': 'integer', 'children': [], 'value': '0'} | def compute_pairwise_similarity_score(self):
pairs = []
all_scores = []
for i, unit in enumerate(self.parsed_response):
for j, other_unit in enumerate(self.parsed_response):
if i != j:
pair = (i, j)
rev_pair = (j, i)
if pair not in pairs and rev_pair not in pairs:
score = self.compute_similarity_score(unit, other_unit)
pairs.append(pair)
pairs.append(rev_pair)
all_scores.append(score)
all_scores = [i for i in all_scores if i != self.same_word_similarity]
self.measures["COLLECTION_" + self.current_similarity_measure + "_pairwise_similarity_score_mean"] = get_mean(
all_scores) \
if len(pairs) > 0 else 'NA' |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute_between_collection_interval_duration'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '43', '73', '95', '117']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '11', 'type': 'for_statement', 'children': ['12', '13', '16']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'collection_list'}; {'id': '16', 'type': 'block', 'children': ['17', '25', '34']}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'start_time'}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '28', 'type': 'attribute', 'children': ['29', '33']}, {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'collection'}, {'id': '31', 'type': 'unary_operator', 'children': ['32'], 'value': '-'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'end_time'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'tuple', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'interstices'}; {'id': '46', 'type': 'list_comprehension', 'children': ['47', '60']}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '55'], 'value': '-'}; {'id': '48', 'type': 'subscript', 'children': ['49', '54']}, {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '51', 'type': 'binary_operator', 'children': ['52', '53'], 'value': '+'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '55', 'type': 'subscript', 'children': ['56', '59']}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '59', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '60', 'type': 'for_in_clause', 'children': ['61', '64']}, {'id': '61', 'type': 'pattern_list', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '69', 'type': 'slice', 'children': ['70', '71']}; {'id': '70', 'type': 'colon', 'children': []}, {'id': '71', 'type': 'unary_operator', 'children': ['72'], 'value': '-'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '73', 'type': 'for_statement', 'children': ['74', '77', '81']}; {'id': '74', 'type': 'pattern_list', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'interstices'}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'if_statement', 'children': ['83', '88']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '87'], 'value': '<'}; {'id': '84', 'type': 'subscript', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'interstices'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '87', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '94']}, {'id': '91', 'type': 'subscript', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'interstices'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '104']}, {'id': '97', 'type': 'subscript', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '101', 'type': 'binary_operator', 'children': ['102', '103'], 'value': '+'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '103', 'type': 'string', 'children': [], 'value': "'between_collection_interval_duration_mean'"}; {'id': '104', 'type': 'conditional_expression', 'children': ['105', '109', '110', '116'], 'value': 'if'}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'get_mean'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'interstices'}, {'id': '109', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '115'], 'value': '>'}, {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'interstices'}, {'id': '115', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '116', 'type': 'string', 'children': [], 'value': "'NA'"}, {'id': '117', 'type': 'if_statement', 'children': ['118', '122']}; {'id': '118', 'type': 'not_operator', 'children': ['119']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'quiet'}; {'id': '122', 'type': 'block', 'children': ['123', '125', '137', '189', '194', '196']}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '125', 'type': 'print_statement', 'children': ['126']}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '136'], 'value': '+'}, {'id': '127', 'type': 'binary_operator', 'children': ['128', '133'], 'value': '+'}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '132'], 'value': '+'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}; {'id': '132', 'type': 'string', 'children': [], 'value': '" between-"'}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'current_collection_type'}; {'id': '136', 'type': 'string', 'children': [], 'value': '" durations"'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '140', 'type': 'binary_operator', 'children': ['141', '154', '155'], 'value': '+'}, {'id': '141', 'type': 'list', 'children': ['142'], 'value': '[(self.current_collection_type + " 1 (start,end)", "Interval",\n self.current_collection_type + " 2 (start,end)")]'}; {'id': '142', 'type': 'tuple', 'children': ['143', '148', '149']}, {'id': '143', 'type': 'binary_operator', 'children': ['144', '147'], 'value': '+'}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'current_collection_type'}, {'id': '147', 'type': 'string', 'children': [], 'value': '" 1 (start,end)"'}; {'id': '148', 'type': 'string', 'children': [], 'value': '"Interval"'}, {'id': '149', 'type': 'binary_operator', 'children': ['150', '153'], 'value': '+'}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'current_collection_type'}, {'id': '153', 'type': 'string', 'children': [], 'value': '" 2 (start,end)"'}; {'id': '154', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '155', 'type': 'list_comprehension', 'children': ['156', '169']}; {'id': '156', 'type': 'tuple', 'children': ['157', '161', '165']}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'd1'}, {'id': '161', 'type': 'call', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'i1'}, {'id': '165', 'type': 'call', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '167', 'type': 'argument_list', 'children': ['168']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'd2'}, {'id': '169', 'type': 'for_in_clause', 'children': ['170', '174']}; {'id': '170', 'type': 'pattern_list', 'children': ['171', '172', '173']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'd1'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'i1'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'd2'}; {'id': '174', 'type': 'call', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '176', 'type': 'argument_list', 'children': ['177', '183', '184']}, {'id': '177', 'type': 'subscript', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '179', 'type': 'slice', 'children': ['180', '181']}; {'id': '180', 'type': 'colon', 'children': []}, {'id': '181', 'type': 'unary_operator', 'children': ['182'], 'value': '-'}; {'id': '182', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'interstices'}; {'id': '184', 'type': 'subscript', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '186', 'type': 'slice', 'children': ['187', '188']}, {'id': '187', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '188', 'type': 'colon', 'children': []}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'print_table'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '196', 'type': 'print_statement', 'children': ['197', '210', '211']}, {'id': '197', 'type': 'binary_operator', 'children': ['198', '209'], 'value': '+'}; {'id': '198', 'type': 'binary_operator', 'children': ['199', '206'], 'value': '+'}, {'id': '199', 'type': 'binary_operator', 'children': ['200', '205'], 'value': '+'}; {'id': '200', 'type': 'binary_operator', 'children': ['201', '202'], 'value': '+'}, {'id': '201', 'type': 'string', 'children': [], 'value': '"Mean "'}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}, {'id': '205', 'type': 'string', 'children': [], 'value': '" between-"'}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'current_collection_type'}, {'id': '209', 'type': 'string', 'children': [], 'value': '" duration"'}; {'id': '210', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '211', 'type': 'subscript', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '217'], 'value': '+'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '217', 'type': 'string', 'children': [], 'value': "'between_collection_interval_duration_mean'"} | def compute_between_collection_interval_duration(self, prefix):
durations = []
for collection in self.collection_list:
start = collection[0].start_time
end = collection[-1].end_time
durations.append((start, end))
interstices = [durations[i + 1][0] - durations[i][1] for i, d in enumerate(durations[:-1])]
for i, entry in enumerate(interstices):
if interstices[i] < 0:
interstices[i] = 0
self.measures[prefix + 'between_collection_interval_duration_mean'] = get_mean(interstices) \
if len(interstices) > 0 else 'NA'
if not self.quiet:
print
print self.current_similarity_measure + " between-" + self.current_collection_type + " durations"
table = [(self.current_collection_type + " 1 (start,end)", "Interval",
self.current_collection_type + " 2 (start,end)")] + \
[(str(d1), str(i1), str(d2)) for d1, i1, d2 in zip(durations[:-1], interstices, durations[1:])]
print_table(table)
print
print "Mean " + self.current_similarity_measure + " between-" + self.current_collection_type + " duration", \
self.measures[prefix + 'between_collection_interval_duration_mean'] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute_within_collection_vowel_duration'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'no_singletons'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '27', '31', '87', '109']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '12', '17']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'no_singletons'}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'min_size'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '17', 'type': 'else_clause', 'children': ['18']}; {'id': '18', 'type': 'block', 'children': ['19', '23']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'augmented_assignment', 'children': ['21', '22'], 'value': '+='}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '22', 'type': 'string', 'children': [], 'value': '"no_singletons_"'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'min_size'}; {'id': '26', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '30', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '31', 'type': 'for_statement', 'children': ['32', '33', '36']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'cluster'}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'collection_list'}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'if_statement', 'children': ['38', '44']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '43'], 'value': '>='}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'cluster'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'min_size'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'for_statement', 'children': ['46', '47', '48']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'cluster'}; {'id': '48', 'type': 'block', 'children': ['49', '59']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '52', 'type': 'subscript', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'full_timed_response'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'word'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'index_in_timed_response'}, {'id': '59', 'type': 'for_statement', 'children': ['60', '61', '64']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'phone'}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'phones'}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'if_statement', 'children': ['66', '73']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '70'], 'value': 'in'}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'phone'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'string'}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'vowels'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'durations'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'binary_operator', 'children': ['81', '84'], 'value': '-'}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'phone'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'phone'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '96']}, {'id': '89', 'type': 'subscript', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '93', 'type': 'binary_operator', 'children': ['94', '95'], 'value': '+'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '95', 'type': 'string', 'children': [], 'value': "'within_collection_vowel_duration_mean'"}; {'id': '96', 'type': 'conditional_expression', 'children': ['97', '101', '102', '108'], 'value': 'if'}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'get_mean'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '101', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '107'], 'value': '>'}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'durations'}, {'id': '107', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '108', 'type': 'string', 'children': [], 'value': "'NA'"}, {'id': '109', 'type': 'if_statement', 'children': ['110', '114']}; {'id': '110', 'type': 'not_operator', 'children': ['111']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'quiet'}; {'id': '114', 'type': 'block', 'children': ['115']}, {'id': '115', 'type': 'if_statement', 'children': ['116', '117', '140']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'no_singletons'}, {'id': '117', 'type': 'block', 'children': ['118']}; {'id': '118', 'type': 'print_statement', 'children': ['119', '132', '133']}, {'id': '119', 'type': 'binary_operator', 'children': ['120', '131'], 'value': '+'}; {'id': '120', 'type': 'binary_operator', 'children': ['121', '128'], 'value': '+'}, {'id': '121', 'type': 'binary_operator', 'children': ['122', '127'], 'value': '+'}; {'id': '122', 'type': 'binary_operator', 'children': ['123', '124'], 'value': '+'}, {'id': '123', 'type': 'string', 'children': [], 'value': '"Mean within-"'}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}, {'id': '127', 'type': 'string', 'children': [], 'value': '"-"'}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'current_collection_type'}, {'id': '131', 'type': 'string', 'children': [], 'value': '" vowel duration, excluding singletons:"'}; {'id': '132', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '133', 'type': 'subscript', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '137', 'type': 'binary_operator', 'children': ['138', '139'], 'value': '+'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '139', 'type': 'string', 'children': [], 'value': "'within_collection_vowel_duration_mean'"}; {'id': '140', 'type': 'else_clause', 'children': ['141']}, {'id': '141', 'type': 'block', 'children': ['142']}; {'id': '142', 'type': 'print_statement', 'children': ['143', '156', '157']}, {'id': '143', 'type': 'binary_operator', 'children': ['144', '155'], 'value': '+'}; {'id': '144', 'type': 'binary_operator', 'children': ['145', '152'], 'value': '+'}, {'id': '145', 'type': 'binary_operator', 'children': ['146', '151'], 'value': '+'}; {'id': '146', 'type': 'binary_operator', 'children': ['147', '148'], 'value': '+'}, {'id': '147', 'type': 'string', 'children': [], 'value': '"Mean within-"'}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'current_similarity_measure'}, {'id': '151', 'type': 'string', 'children': [], 'value': '"-"'}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'current_collection_type'}, {'id': '155', 'type': 'string', 'children': [], 'value': '" vowel duration, including singletons:"'}; {'id': '156', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '157', 'type': 'subscript', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '161', 'type': 'binary_operator', 'children': ['162', '163'], 'value': '+'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '163', 'type': 'string', 'children': [], 'value': "'within_collection_vowel_duration_mean'"} | def compute_within_collection_vowel_duration(self, prefix, no_singletons=False):
if no_singletons:
min_size = 2
else:
prefix += "no_singletons_"
min_size = 1
durations = []
for cluster in self.collection_list:
if len(cluster) >= min_size:
for word in cluster:
word = self.full_timed_response[word.index_in_timed_response]
for phone in word.phones:
if phone.string in self.vowels:
durations.append(phone.end - phone.start)
self.measures[prefix + 'within_collection_vowel_duration_mean'] = get_mean(durations) \
if len(durations) > 0 else 'NA'
if not self.quiet:
if no_singletons:
print "Mean within-" + self.current_similarity_measure + "-" + self.current_collection_type + \
" vowel duration, excluding singletons:", \
self.measures[prefix + 'within_collection_vowel_duration_mean']
else:
print "Mean within-" + self.current_similarity_measure + "-" + self.current_collection_type + \
" vowel duration, including singletons:", \
self.measures[prefix + 'within_collection_vowel_duration_mean'] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'print_output'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '32', '181']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '12']}, {'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '=='}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'response_format'}, {'id': '11', 'type': 'string', 'children': [], 'value': '"csv"'}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '18']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'if_statement', 'children': ['20', '23']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'in'}, {'id': '21', 'type': 'string', 'children': [], 'value': '"TIMING_"'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '31']}; {'id': '26', 'type': 'subscript', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '31', 'type': 'string', 'children': [], 'value': '"NA"'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '37']}, {'id': '33', 'type': 'not_operator', 'children': ['34']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'quiet'}, {'id': '37', 'type': 'block', 'children': ['38', '40', '50', '64', '70', '72', '90', '104', '110', '112', '114', '132']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '40', 'type': 'print_statement', 'children': ['41']}, {'id': '41', 'type': 'binary_operator', 'children': ['42', '49'], 'value': '+'}; {'id': '42', 'type': 'call', 'children': ['43', '48']}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'upper'}; {'id': '48', 'type': 'argument_list', 'children': []}, {'id': '49', 'type': 'string', 'children': [], 'value': '" RESULTS:"'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '53', 'type': 'list_comprehension', 'children': ['54', '55', '60']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '55', 'type': 'for_in_clause', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '60', 'type': 'if_clause', 'children': ['61']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'in'}; {'id': '62', 'type': 'string', 'children': [], 'value': "'COUNT_'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'print_statement', 'children': ['71']}, {'id': '71', 'type': 'string', 'children': [], 'value': '"Counts:"'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'print_table'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'list_comprehension', 'children': ['77', '87']}, {'id': '77', 'type': 'tuple', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'subscript', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '87', 'type': 'for_in_clause', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '93', 'type': 'list_comprehension', 'children': ['94', '95', '100']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '95', 'type': 'for_in_clause', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '100', 'type': 'if_clause', 'children': ['101']}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '103'], 'value': 'in'}; {'id': '102', 'type': 'string', 'children': [], 'value': "'COLLECTION_'"}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '109', 'type': 'argument_list', 'children': []}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '112', 'type': 'print_statement', 'children': ['113']}, {'id': '113', 'type': 'string', 'children': [], 'value': '"Collection measures:"'}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'print_table'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'list_comprehension', 'children': ['119', '129']}, {'id': '119', 'type': 'tuple', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'subscript', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '129', 'type': 'for_in_clause', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '132', 'type': 'if_statement', 'children': ['133', '138']}, {'id': '133', 'type': 'comparison_operator', 'children': ['134', '137'], 'value': '=='}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'response_format'}, {'id': '137', 'type': 'string', 'children': [], 'value': '"TextGrid"'}; {'id': '138', 'type': 'block', 'children': ['139', '153', '159', '161', '163']}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '142', 'type': 'list_comprehension', 'children': ['143', '144', '149']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '144', 'type': 'for_in_clause', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '149', 'type': 'if_clause', 'children': ['150']}; {'id': '150', 'type': 'comparison_operator', 'children': ['151', '152'], 'value': 'in'}, {'id': '151', 'type': 'string', 'children': [], 'value': "'TIMING_'"}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '158', 'type': 'argument_list', 'children': []}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '161', 'type': 'print_statement', 'children': ['162']}; {'id': '162', 'type': 'string', 'children': [], 'value': '"Time-based measures:"'}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'print_table'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'list_comprehension', 'children': ['168', '178']}; {'id': '168', 'type': 'tuple', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '170', 'type': 'call', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '172', 'type': 'argument_list', 'children': ['173']}, {'id': '173', 'type': 'subscript', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '178', 'type': 'for_in_clause', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '181', 'type': 'if_statement', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'target_file'}, {'id': '185', 'type': 'block', 'children': ['186']}; {'id': '186', 'type': 'with_statement', 'children': ['187', '199']}, {'id': '187', 'type': 'with_clause', 'children': ['188']}; {'id': '188', 'type': 'with_item', 'children': ['189']}, {'id': '189', 'type': 'as_pattern', 'children': ['190', '197']}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '192', 'type': 'argument_list', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'target_file'}; {'id': '196', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '197', 'type': 'as_pattern_target', 'children': ['198']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '199', 'type': 'block', 'children': ['200', '262', '276', '283']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'assignment', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '203', 'type': 'binary_operator', 'children': ['204', '244', '245'], 'value': '+'}; {'id': '204', 'type': 'binary_operator', 'children': ['205', '226', '227'], 'value': '+'}, {'id': '205', 'type': 'binary_operator', 'children': ['206', '208', '209'], 'value': '+'}; {'id': '206', 'type': 'list', 'children': ['207'], 'value': "['file_id']"}, {'id': '207', 'type': 'string', 'children': [], 'value': "'file_id'"}; {'id': '208', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '209', 'type': 'list_comprehension', 'children': ['210', '217', '222']}; {'id': '210', 'type': 'binary_operator', 'children': ['211', '216'], 'value': '+'}, {'id': '211', 'type': 'binary_operator', 'children': ['212', '215'], 'value': '+'}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '215', 'type': 'string', 'children': [], 'value': '"_"'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '217', 'type': 'for_in_clause', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '222', 'type': 'if_clause', 'children': ['223']}, {'id': '223', 'type': 'comparison_operator', 'children': ['224', '225'], 'value': 'in'}; {'id': '224', 'type': 'string', 'children': [], 'value': "'COUNT_'"}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '226', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '227', 'type': 'list_comprehension', 'children': ['228', '235', '240']}; {'id': '228', 'type': 'binary_operator', 'children': ['229', '234'], 'value': '+'}, {'id': '229', 'type': 'binary_operator', 'children': ['230', '233'], 'value': '+'}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '233', 'type': 'string', 'children': [], 'value': '"_"'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '235', 'type': 'for_in_clause', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '240', 'type': 'if_clause', 'children': ['241']}, {'id': '241', 'type': 'comparison_operator', 'children': ['242', '243'], 'value': 'in'}; {'id': '242', 'type': 'string', 'children': [], 'value': "'COLLECTION_'"}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '244', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '245', 'type': 'list_comprehension', 'children': ['246', '253', '258']}; {'id': '246', 'type': 'binary_operator', 'children': ['247', '252'], 'value': '+'}, {'id': '247', 'type': 'binary_operator', 'children': ['248', '251'], 'value': '+'}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '251', 'type': 'string', 'children': [], 'value': '"_"'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '253', 'type': 'for_in_clause', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '255', 'type': 'attribute', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'measures'}; {'id': '258', 'type': 'if_clause', 'children': ['259']}, {'id': '259', 'type': 'comparison_operator', 'children': ['260', '261'], 'value': 'in'}; {'id': '260', 'type': 'string', 'children': [], 'value': "'TIMING_'"}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '262', 'type': 'expression_statement', 'children': ['263']}, {'id': '263', 'type': 'assignment', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'writer'}, {'id': '265', 'type': 'call', 'children': ['266', '269']}; {'id': '266', 'type': 'attribute', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'csv'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'writer'}, {'id': '269', 'type': 'argument_list', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '271', 'type': 'keyword_argument', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'quoting'}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'csv'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'QUOTE_MINIMAL'}; {'id': '276', 'type': 'expression_statement', 'children': ['277']}, {'id': '277', 'type': 'call', 'children': ['278', '281']}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'writer'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'writerow'}, {'id': '281', 'type': 'argument_list', 'children': ['282']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'call', 'children': ['285', '288']}, {'id': '285', 'type': 'attribute', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'writer'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'writerow'}; {'id': '288', 'type': 'argument_list', 'children': ['289']}, {'id': '289', 'type': 'binary_operator', 'children': ['290', '296'], 'value': '+'}; {'id': '290', 'type': 'list', 'children': ['291'], 'value': '[self.measures["file_id"]]'}, {'id': '291', 'type': 'subscript', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '295', 'type': 'string', 'children': [], 'value': '"file_id"'}; {'id': '296', 'type': 'list_comprehension', 'children': ['297', '316']}, {'id': '297', 'type': 'subscript', 'children': ['298', '301']}; {'id': '298', 'type': 'attribute', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'measures'}, {'id': '301', 'type': 'call', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'string', 'children': [], 'value': '"_"'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'subscript', 'children': ['307', '313']}, {'id': '307', 'type': 'call', 'children': ['308', '311']}; {'id': '308', 'type': 'attribute', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '311', 'type': 'argument_list', 'children': ['312']}; {'id': '312', 'type': 'string', 'children': [], 'value': "'_'"}, {'id': '313', 'type': 'slice', 'children': ['314', '315']}; {'id': '314', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '315', 'type': 'colon', 'children': []}; {'id': '316', 'type': 'for_in_clause', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '318', 'type': 'subscript', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '320', 'type': 'slice', 'children': ['321', '322']}, {'id': '321', 'type': 'integer', 'children': [], 'value': '1'} | def print_output(self):
if self.response_format == "csv":
for key in self.measures:
if "TIMING_" in key:
self.measures[key] = "NA"
if not self.quiet:
print
print self.type.upper() + " RESULTS:"
keys = [e for e in self.measures if 'COUNT_' in e]
keys.sort()
print "Counts:"
print_table([(entry, str(self.measures[entry])) for entry in keys])
keys = [e for e in self.measures if 'COLLECTION_' in e]
keys.sort()
print
print "Collection measures:"
print_table([(entry, str(self.measures[entry])) for entry in keys])
if self.response_format == "TextGrid":
keys = [e for e in self.measures if 'TIMING_' in e]
keys.sort()
print
print "Time-based measures:"
print_table([(entry, str(self.measures[entry])) for entry in keys])
if self.target_file:
with open(self.target_file, 'w') as outfile:
header = ['file_id'] + \
[self.type + "_" + e for e in self.measures if 'COUNT_' in e] + \
[self.type + "_" + e for e in self.measures if 'COLLECTION_' in e] + \
[self.type + "_" + e for e in self.measures if 'TIMING_' in e]
writer = csv.writer(outfile, quoting=csv.QUOTE_MINIMAL)
writer.writerow(header)
writer.writerow([self.measures["file_id"]] +
[self.measures["_".join(e.split('_')[1:])] for e in header[1:]]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fieldName'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '12']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'string', 'children': [], 'value': "'''\n sort_by - Return a copy of this collection, sorted by the given fieldName.\n The fieldName is accessed the same way as other filtering, so it supports custom properties, etc.\n @param fieldName <str> - The name of the field on which to sort by\n @param reverse <bool> Default False - If True, list will be in reverse order.\n @return <QueryableList> - A QueryableList of the same type with the elements sorted based on arguments.\n '''"}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '34']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '24', 'type': 'lambda', 'children': ['25', '27']}, {'id': '25', 'type': 'lambda_parameters', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_get_item_value'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'fieldName'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'reverse'} | def sort_by(self, fieldName, reverse=False):
'''
sort_by - Return a copy of this collection, sorted by the given fieldName.
The fieldName is accessed the same way as other filtering, so it supports custom properties, etc.
@param fieldName <str> - The name of the field on which to sort by
@param reverse <bool> Default False - If True, list will be in reverse order.
@return <QueryableList> - A QueryableList of the same type with the elements sorted based on arguments.
'''
return self.__class__(
sorted(self, key = lambda item : self._get_item_value(item, fieldName), reverse=reverse)
) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_qtls_from_rqtl_data'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'matrix'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'lod_threshold'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '28', '189']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 't_matrix'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'list_splat', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'matrix'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'qtls'}, {'id': '21', 'type': 'list', 'children': ['22'], 'value': "[['Trait', 'Linkage Group', 'Position', 'Exact marker', 'LOD']]"}; {'id': '22', 'type': 'list', 'children': ['23', '24', '25', '26', '27'], 'value': "['Trait', 'Linkage Group', 'Position', 'Exact marker', 'LOD']"}, {'id': '23', 'type': 'string', 'children': [], 'value': "'Trait'"}; {'id': '24', 'type': 'string', 'children': [], 'value': "'Linkage Group'"}, {'id': '25', 'type': 'string', 'children': [], 'value': "'Position'"}; {'id': '26', 'type': 'string', 'children': [], 'value': "'Exact marker'"}, {'id': '27', 'type': 'string', 'children': [], 'value': "'LOD'"}; {'id': '28', 'type': 'for_statement', 'children': ['29', '30', '35']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '30', 'type': 'subscript', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 't_matrix'}; {'id': '32', 'type': 'slice', 'children': ['33', '34']}, {'id': '33', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '34', 'type': 'colon', 'children': []}, {'id': '35', 'type': 'block', 'children': ['36', '40', '44', '48', '52']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'lgroup'}, {'id': '39', 'type': 'None', 'children': []}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'max_lod'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'peak'}, {'id': '47', 'type': 'None', 'children': []}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'cnt'}, {'id': '51', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '52', 'type': 'while_statement', 'children': ['53', '59']}, {'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': '<'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'cnt'}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '59', 'type': 'block', 'children': ['60', '73', '183']}; {'id': '60', 'type': 'if_statement', 'children': ['61', '64']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'is'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'lgroup'}, {'id': '63', 'type': 'None', 'children': []}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'lgroup'}; {'id': '68', 'type': 'subscript', 'children': ['69', '72']}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 't_matrix'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'cnt'}, {'id': '73', 'type': 'if_statement', 'children': ['74', '81', '122']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': '=='}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'lgroup'}; {'id': '76', 'type': 'subscript', 'children': ['77', '80']}, {'id': '77', 'type': 'subscript', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 't_matrix'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'cnt'}, {'id': '81', 'type': 'block', 'children': ['82', '96']}; {'id': '82', 'type': 'if_statement', 'children': ['83', '86']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': 'is'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'max_lod'}, {'id': '85', 'type': 'None', 'children': []}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'subscript', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'cnt'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '108']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '104'], 'value': '>'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'cnt'}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '108', 'type': 'block', 'children': ['109', '118']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'subscript', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'cnt'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'peak'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'cnt'}; {'id': '122', 'type': 'else_clause', 'children': ['123']}, {'id': '123', 'type': 'block', 'children': ['124', '171', '175', '179']}; {'id': '124', 'type': 'if_statement', 'children': ['125', '140']}, {'id': '125', 'type': 'boolean_operator', 'children': ['126', '138', '139'], 'value': 'and'}; {'id': '126', 'type': 'boolean_operator', 'children': ['127', '128', '129'], 'value': 'and'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '128', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '129', 'type': 'comparison_operator', 'children': ['130', '134'], 'value': '>'}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '134', 'type': 'call', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'lod_threshold'}; {'id': '138', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'peak'}; {'id': '140', 'type': 'block', 'children': ['141', '164']}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '144', 'type': 'list', 'children': ['145', '148', '153', '158', '163'], 'value': '[row[0],\n t_matrix[1][peak],\n t_matrix[2][peak],\n t_matrix[0][peak],\n max_lod,\n ]'}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '147', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '148', 'type': 'subscript', 'children': ['149', '152']}, {'id': '149', 'type': 'subscript', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 't_matrix'}, {'id': '151', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'peak'}, {'id': '153', 'type': 'subscript', 'children': ['154', '157']}; {'id': '154', 'type': 'subscript', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 't_matrix'}; {'id': '156', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'peak'}; {'id': '158', 'type': 'subscript', 'children': ['159', '162']}, {'id': '159', 'type': 'subscript', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 't_matrix'}, {'id': '161', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'peak'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'call', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'qtls'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '169', 'type': 'argument_list', 'children': ['170']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'lgroup'}; {'id': '174', 'type': 'None', 'children': []}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'assignment', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'max_lod'}; {'id': '178', 'type': 'None', 'children': []}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'assignment', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'peak'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'cnt'}, {'id': '183', 'type': 'expression_statement', 'children': ['184']}; {'id': '184', 'type': 'assignment', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'cnt'}; {'id': '186', 'type': 'binary_operator', 'children': ['187', '188'], 'value': '+'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'cnt'}; {'id': '188', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '189', 'type': 'return_statement', 'children': ['190']} | def get_qtls_from_rqtl_data(matrix, lod_threshold):
t_matrix = list(zip(*matrix))
qtls = [['Trait', 'Linkage Group', 'Position', 'Exact marker', 'LOD']]
for row in t_matrix[3:]:
lgroup = None
max_lod = None
peak = None
cnt = 1
while cnt < len(row):
if lgroup is None:
lgroup = t_matrix[1][cnt]
if lgroup == t_matrix[1][cnt]:
if max_lod is None:
max_lod = float(row[cnt])
if float(row[cnt]) > float(max_lod):
max_lod = float(row[cnt])
peak = cnt
else:
if max_lod \
and float(max_lod) > float(lod_threshold) \
and peak:
qtl = [row[0],
t_matrix[1][peak],
t_matrix[2][peak],
t_matrix[0][peak],
max_lod,
]
qtls.append(qtl)
lgroup = None
max_lod = None
peak = cnt
cnt = cnt + 1
return qtls |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'response'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'code'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '7', 'type': 'string', 'children': [], 'value': "''"}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'last_modified'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'expires'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'dictionary_splat_pattern', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '19', 'type': 'block', 'children': ['20', '53', '67', '99', '128']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '24']}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '23'], 'value': 'is'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'block', 'children': ['25', '47']}, {'id': '25', 'type': 'if_statement', 'children': ['26', '40']}; {'id': '26', 'type': 'not_operator', 'children': ['27']}, {'id': '27', 'type': 'parenthesized_expression', 'children': ['28']}; {'id': '28', 'type': 'boolean_operator', 'children': ['29', '34'], 'value': 'and'}, {'id': '29', 'type': 'comparison_operator', 'children': ['30', '33'], 'value': '=='}; {'id': '30', 'type': 'subscript', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '33', 'type': 'string', 'children': [], 'value': '\'"\''}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '39'], 'value': '=='}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '37', 'type': 'unary_operator', 'children': ['38'], 'value': '-'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '39', 'type': 'string', 'children': [], 'value': '\'"\''}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '46'], 'value': '%'}, {'id': '45', 'type': 'string', 'children': [], 'value': '\'"%s"\''}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '52']}, {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '51', 'type': 'string', 'children': [], 'value': "'etag'"}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '53', 'type': 'if_statement', 'children': ['54', '57']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'is'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'last_modified'}; {'id': '56', 'type': 'None', 'children': []}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '63']}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '62', 'type': 'string', 'children': [], 'value': "'last_modified'"}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'datetime_to_httpdate'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'last_modified'}, {'id': '67', 'type': 'if_statement', 'children': ['68', '71']}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': 'is'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'expires'}; {'id': '70', 'type': 'None', 'children': []}, {'id': '71', 'type': 'block', 'children': ['72']}; {'id': '72', 'type': 'if_statement', 'children': ['73', '78', '88']}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'expires'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '78', 'type': 'block', 'children': ['79']}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '84']}, {'id': '81', 'type': 'subscript', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '83', 'type': 'string', 'children': [], 'value': "'expires'"}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'datetime_to_httpdate'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'expires'}; {'id': '88', 'type': 'else_clause', 'children': ['89']}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '95']}; {'id': '92', 'type': 'subscript', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '94', 'type': 'string', 'children': [], 'value': "'expires'"}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'timedelta_to_httpdate'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'expires'}, {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'assignment', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '102', 'type': 'list_comprehension', 'children': ['103', '116']}, {'id': '103', 'type': 'tuple', 'children': ['104', '115']}; {'id': '104', 'type': 'call', 'children': ['105', '114']}, {'id': '105', 'type': 'attribute', 'children': ['106', '113']}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '112']}, {'id': '111', 'type': 'string', 'children': [], 'value': "'_'"}; {'id': '112', 'type': 'string', 'children': [], 'value': "'-'"}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'title'}; {'id': '114', 'type': 'argument_list', 'children': []}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '116', 'type': 'for_in_clause', 'children': ['117', '120']}, {'id': '117', 'type': 'pattern_list', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '127', 'type': 'argument_list', 'children': []}; {'id': '128', 'type': 'return_statement', 'children': ['129']}, {'id': '129', 'type': 'call', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'Response'}, {'id': '131', 'type': 'argument_list', 'children': ['132', '133', '134']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'code'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'headers'} | def response(code, body='', etag=None, last_modified=None, expires=None, **kw):
if etag is not None:
if not (etag[0] == '"' and etag[-1] == '"'):
etag = '"%s"' % etag
kw['etag'] = etag
if last_modified is not None:
kw['last_modified'] = datetime_to_httpdate(last_modified)
if expires is not None:
if isinstance(expires, datetime):
kw['expires'] = datetime_to_httpdate(expires)
else:
kw['expires'] = timedelta_to_httpdate(expires)
headers = [(k.replace('_', '-').title(), v) for k, v in sorted(kw.items())]
return Response(code, headers, body) |
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'''Plots the optimum cutoff for the predictions to maximize the fraction correct metric over a range of experimental cutoffs.
Returns the average scalar corresponding to the best value of fraction correct over a range of cutoff values for the experimental cutoffs.'''
analysis_set_prefix = ''
plot_filename = None
if not suppress_plot:
output_filename_prefix = '{0}{1}optimum_fraction_correct_at_varying_kcal_mol'.format(analysis_file_prefix, analysis_set_prefix)
plot_filename = output_filename_prefix + '.png'
csv_filename = output_filename_prefix + '.txt'
lines = ['ExperimentalCutoff,BestPredictionCutoff']
x_cutoff = min_stability_classication_x_cutoff
x_values = []
y_values = []
avg_scale = 0
plot_graph = self.generate_plots and not(suppress_plot)
while x_cutoff < max_stability_classication_x_cutoff + 0.1:
max_value_cutoff, max_value, fraction_correct_range = self.determine_optimum_fraction_correct_cutoffs(analysis_set, self.dataframe, x_cutoff)
if plot_graph:
lines.append(','.join(map(str, (x_cutoff, max_value_cutoff))))
x_values.append(x_cutoff)
y_values.append(max_value_cutoff)
avg_scale += max_value_cutoff / x_cutoff
x_cutoff += 0.1
if plot_graph:
write_file(csv_filename, '\n'.join(lines))
avg_scale = avg_scale / len(x_values)
x_values = numpy.array(x_values)
y_values = numpy.array(y_values)
scalars = y_values / x_values
average_scalar = numpy.mean(scalars)
plot_label_1 = 'Scalar == %0.2f' % average_scalar
plot_label_2 = 'sigma == %0.2f' % numpy.std(scalars)
if plot_graph:
if not(os.path.exists(plot_filename) and not(self.recreate_graphs)):
if verbose:
self.log('Saving scatterplot to %s.' % plot_filename)
self.log('Saving plot of approximate optimal fraction correct cutoffs over varying experimental cutoffs to %s.' % plot_filename)
title = 'Optimum cutoff for fraction correct metric at varying experimental cutoffs'
if analysis_set:
title += ' for {0}'.format(analysis_set)
r_script = '''library(ggplot2)
library(gridExtra)
library(scales)
library(qualV)
png('%(plot_filename)s', height=4096, width=4096, bg="white", res=600)
plot_data <- read.csv('%(csv_filename)s', header=T)
max_y = max(plot_data$BestPredictionCutoff)
p <- ggplot(data = plot_data, aes(x = ExperimentalCutoff, y = BestPredictionCutoff)) +
xlab("Experimental cutoff (kcal/mol)") +
ylab("Optimal prediction cutoff (energy units)") +
ggtitle("%(title)s") +
geom_point() +
geom_line() +
geom_smooth() +
geom_text(hjust=0, size=4, color="black", aes(0.5, max_y, fontface="plain", family = "sans", label="%(plot_label_1)s"), parse = T) +
geom_text(hjust=0, size=4, color="black", aes(0.5, max_y - 0.5, fontface="plain", family = "sans", label="%(plot_label_2)s"), parse = T)
p
dev.off()'''
RInterface._runRScript(r_script % locals())
return average_scalar, plot_filename |
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{'id': '12', 'type': 'not_operator', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'pfam_accs'}; {'id': '14', 'type': 'block', 'children': ['15']}, {'id': '15', 'type': 'return_statement', 'children': ['16']}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'associated_pdb_chains'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'pfam_api'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'get_pfam_api'}; {'id': '30', 'type': 'argument_list', 'children': []}, {'id': '31', 'type': 'for_statement', 'children': ['32', '33', '34']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'pfam_acc'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'pfam_accs'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'associated_pdb_chains'}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'associated_pdb_chains'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'union'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pfam_api'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'get_pdb_chains_from_pfam_accession_number'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'pfam_acc'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'hits'}; {'id': '52', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'pfam_scop_mapping'}; {'id': '56', 'type': 'dictionary', 'children': []}, {'id': '57', 'type': 'for_statement', 'children': ['58', '59', '60']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'pdb_chain_pair'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'associated_pdb_chains'}; {'id': '60', 'type': 'block', 'children': ['61', '73', '91']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '66']}, {'id': '63', 'type': 'pattern_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ass_pdb_id'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'ass_chain_id'}; {'id': '66', 'type': 'expression_list', 'children': ['67', '70']}, {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'pdb_chain_pair'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'pdb_chain_pair'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'hit'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'get_chain_details'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82', '85', '88']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'ass_pdb_id'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'ass_chain_id'}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'internal_function_call'}, {'id': '87', 'type': 'True', 'children': []}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'pfam_scop_mapping'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'pfam_scop_mapping'}, {'id': '91', 'type': 'if_statement', 'children': ['92', '100']}; {'id': '92', 'type': 'boolean_operator', 'children': ['93', '94'], 'value': 'and'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'hit'}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'hit'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'chains'"}; {'id': '100', 'type': 'block', 'children': ['101', '111']}, {'id': '101', 'type': 'assert_statement', 'children': ['102']}; {'id': '102', 'type': 'parenthesized_expression', 'children': ['103']}, {'id': '103', 'type': 'comparison_operator', 'children': ['104', '110'], 'value': '=='}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'hit'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'chains'"}; {'id': '110', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'hits'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'subscript', 'children': ['118', '121']}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'hit'}; {'id': '120', 'type': 'string', 'children': [], 'value': "'chains'"}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'ass_chain_id'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'allowed_scop_domains'}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'map'}, {'id': '127', 'type': 'argument_list', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '129', 'type': 'subscript', 'children': ['130', '141']}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '132', 'type': 'argument_list', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'intersection'}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'pfam_scop_mapping'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '140', 'type': 'argument_list', 'children': []}, {'id': '141', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'allowed_scop_domains'}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '150', 'type': 'argument_list', 'children': ['151']}, {'id': '151', 'type': 'binary_operator', 'children': ['152', '156'], 'value': '+'}; {'id': '152', 'type': 'parenthesized_expression', 'children': ['153']}, {'id': '153', 'type': 'boolean_operator', 'children': ['154', '155'], 'value': 'or'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'allowed_scop_domains'}, {'id': '155', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '156', 'type': 'parenthesized_expression', 'children': ['157']}, {'id': '157', 'type': 'boolean_operator', 'children': ['158', '164'], 'value': 'or'}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'get_sunid_for_pfam_accs'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'pfam_accs'}; {'id': '164', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'filtered_hits'}; {'id': '168', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'call', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '172', 'type': 'argument_list', 'children': ['173']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'pfam_accs'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'call', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'allowed_scop_domains'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'binary_operator', 'children': ['184', '185'], 'value': '%'}; {'id': '184', 'type': 'string', 'children': [], 'value': "'%d hits'"}, {'id': '185', 'type': 'call', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'hits'}, {'id': '189', 'type': 'for_statement', 'children': ['190', '191', '192']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'hit'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'hits'}; {'id': '192', 'type': 'block', 'children': ['193', '197']}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'domains_to_ignore'}; {'id': '196', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '197', 'type': 'for_statement', 'children': ['198', '201', '208']}; {'id': '198', 'type': 'pattern_list', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '201', 'type': 'call', 'children': ['202', '207']}; {'id': '202', 'type': 'attribute', 'children': ['203', '206']}, {'id': '203', 'type': 'subscript', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'hit'}, {'id': '205', 'type': 'string', 'children': [], 'value': "'domains'"}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '207', 'type': 'argument_list', 'children': []}; {'id': '208', 'type': 'block', 'children': ['209']}, {'id': '209', 'type': 'if_statement', 'children': ['210', '215']}; {'id': '210', 'type': 'comparison_operator', 'children': ['211', '214'], 'value': 'in'}, {'id': '211', 'type': 'subscript', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '213', 'type': 'string', 'children': [], 'value': "'sunid'"}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'allowed_scop_domains'}, {'id': '215', 'type': 'block', 'children': ['216']}; {'id': '216', 'type': 'expression_statement', 'children': ['217']}, {'id': '217', 'type': 'call', 'children': ['218', '221']}; {'id': '218', 'type': 'attribute', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'filtered_hits'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '221', 'type': 'argument_list', 'children': ['222']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'call', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '226', 'type': 'argument_list', 'children': ['227']}, {'id': '227', 'type': 'binary_operator', 'children': ['228', '229'], 'value': '%'}; {'id': '228', 'type': 'string', 'children': [], 'value': "'%d filtered_hits'"}, {'id': '229', 'type': 'call', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '231', 'type': 'argument_list', 'children': ['232']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'filtered_hits'}, {'id': '233', 'type': 'if_statement', 'children': ['234', '236']}; {'id': '234', 'type': 'not_operator', 'children': ['235']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'filtered_hits'}; {'id': '236', 'type': 'block', 'children': ['237']}, {'id': '237', 'type': 'return_statement', 'children': ['238']}; {'id': '238', 'type': 'None', 'children': []}, {'id': '239', 'type': 'expression_statement', 'children': ['240']}; {'id': '240', 'type': 'assignment', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '242', 'type': 'call', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'get_basic_pdb_chain_information'}; {'id': '246', 'type': 'argument_list', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'chain_id'}, {'id': '249', 'type': 'expression_statement', 'children': ['250']}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '254', 'type': 'argument_list', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'get_common_fields'}, {'id': '259', 'type': 'argument_list', 'children': ['260']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'filtered_hits'}, {'id': '261', 'type': 'expression_statement', 'children': ['262']}; {'id': '262', 'type': 'call', 'children': ['263', '266']}, {'id': '263', 'type': 'attribute', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '266', 'type': 'argument_list', 'children': ['267']}, {'id': '267', 'type': 'call', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '269', 'type': 'argument_list', 'children': ['270', '273', '276']}; {'id': '270', 'type': 'keyword_argument', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'SCOPe_sources'}; {'id': '272', 'type': 'string', 'children': [], 'value': "'Pfam + SCOPe'"}, {'id': '273', 'type': 'keyword_argument', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'SCOPe_search_fields'}, {'id': '275', 'type': 'string', 'children': [], 'value': "'Pfam + link_pdb.pdb_chain_id'"}; {'id': '276', 'type': 'keyword_argument', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'SCOPe_trust_level'}; {'id': '278', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '279', 'type': 'for_statement', 'children': ['280', '283', '293']}; {'id': '280', 'type': 'pattern_list', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '283', 'type': 'call', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '285', 'type': 'argument_list', 'children': ['286']}; {'id': '286', 'type': 'call', 'children': ['287', '292']}, {'id': '287', 'type': 'attribute', 'children': ['288', '291']}; {'id': '288', 'type': 'attribute', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'levels'}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '292', 'type': 'argument_list', 'children': []}, {'id': '293', 'type': 'block', 'children': ['294']}; {'id': '294', 'type': 'expression_statement', 'children': ['295']}, {'id': '295', 'type': 'assignment', 'children': ['296', '299']}; {'id': '296', 'type': 'subscript', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '299', 'type': 'None', 'children': []}; {'id': '300', 'type': 'expression_statement', 'children': ['301']}, {'id': '301', 'type': 'call', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'call', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '308', 'type': 'argument_list', 'children': ['309']}, {'id': '309', 'type': 'call', 'children': ['310', '313']}; {'id': '310', 'type': 'attribute', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'get_common_hierarchy'}, {'id': '313', 'type': 'argument_list', 'children': ['314']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'filtered_hits'}, {'id': '315', 'type': 'return_statement', 'children': ['316']} | def get_chain_details_by_related_pdb_chains(self, pdb_id, chain_id, pfam_accs):
''' Returns a dict of SCOPe details using info
This returns Pfam-level information for a PDB chain i.e. no details on the protein, species, or domain will be returned.
If there are SCOPe entries for the associated Pfam accession numbers which agree then this function returns
pretty complete information.
'''
if not pfam_accs:
return None
associated_pdb_chains = set()
pfam_api = self.get_pfam_api()
for pfam_acc in pfam_accs:
associated_pdb_chains = associated_pdb_chains.union(pfam_api.get_pdb_chains_from_pfam_accession_number(pfam_acc))
hits = []
pfam_scop_mapping = {}
for pdb_chain_pair in associated_pdb_chains:
ass_pdb_id, ass_chain_id = pdb_chain_pair[0], pdb_chain_pair[1]
hit = self.get_chain_details(ass_pdb_id, chain = ass_chain_id, internal_function_call = True, pfam_scop_mapping = pfam_scop_mapping)
if hit and hit.get('chains'):
assert(len(hit['chains']) == 1)
hits.append(hit['chains'][ass_chain_id])
allowed_scop_domains = map(int, map(set.intersection, pfam_scop_mapping.values())[0])
allowed_scop_domains = list(set((allowed_scop_domains or []) + (self.get_sunid_for_pfam_accs(pfam_accs) or [])))
filtered_hits = []
print(pfam_accs)
print(allowed_scop_domains)
print('%d hits' % len(hits))
for hit in hits:
domains_to_ignore = []
for k, v in hit['domains'].iteritems():
if v['sunid'] in allowed_scop_domains:
filtered_hits.append(v)
print('%d filtered_hits' % len(filtered_hits))
if not filtered_hits:
return None
d = self.get_basic_pdb_chain_information(pdb_id, chain_id)
d.update(self.get_common_fields(filtered_hits))
d.update(dict(
SCOPe_sources = 'Pfam + SCOPe',
SCOPe_search_fields = 'Pfam + link_pdb.pdb_chain_id',
SCOPe_trust_level = 3
))
for k, v in sorted(self.levels.iteritems()):
d[v] = None
d.update(dict(self.get_common_hierarchy(filtered_hits)))
return d |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'recall_service'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'service'}; {'id': '6', 'type': 'block', 'children': ['7', '20', '41', '211']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '14']}; {'id': '8', 'type': 'not_operator', 'children': ['9']}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '11', 'type': 'argument_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'service'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'Service'}; {'id': '14', 'type': 'block', 'children': ['15']}, {'id': '15', 'type': 'raise_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'string', 'children': [], 'value': '"service must be of type Service."'}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'string', 'children': [], 'value': '"The deployment for {0} on {1} failed starting the rollback."'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'service'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'alias'}; {'id': '34', 'type': 'call', 'children': ['35', '40']}, {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'geturl'}; {'id': '40', 'type': 'argument_list', 'children': []}, {'id': '41', 'type': 'function_definition', 'children': ['42', '43', '45']}; {'id': '42', 'type': 'function_name', 'children': [], 'value': 'anonymous'}, {'id': '43', 'type': 'parameters', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'anonymous_service'}, {'id': '45', 'type': 'block', 'children': ['46', '59', '68']}; {'id': '46', 'type': 'if_statement', 'children': ['47', '53']}, {'id': '47', 'type': 'not_operator', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'anonymous_service'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'Service'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'raise_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'string', 'children': [], 'value': '"service must be an instance of Service."'}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'find_previous_service_containers'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'anonymous_service'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '70', 'type': 'block', 'children': ['71', '90', '98']}, {'id': '71', 'type': 'for_statement', 'children': ['72', '73', '83']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '82']}, {'id': '77', 'type': 'attribute', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'anonymous_service'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'containers'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '82', 'type': 'argument_list', 'children': []}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'delete_statement', 'children': ['85']}, {'id': '85', 'type': 'subscript', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'anonymous_service'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'containers'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '97']}; {'id': '92', 'type': 'attribute', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'anonymous_service'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'cargo'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'delete'}, {'id': '97', 'type': 'argument_list', 'children': []}; {'id': '98', 'type': 'for_statement', 'children': ['99', '102', '108']}, {'id': '99', 'type': 'pattern_list', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'containers'}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'if_statement', 'children': ['110', '120', '139']}; {'id': '110', 'type': 'call', 'children': ['111', '118']}, {'id': '111', 'type': 'attribute', 'children': ['112', '117']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '116', 'type': 'argument_list', 'children': []}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'string', 'children': [], 'value': "'running'"}; {'id': '120', 'type': 'block', 'children': ['121']}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '126', 'type': 'argument_list', 'children': ['127', '128']}, {'id': '127', 'type': 'string', 'children': [], 'value': '"is already running... Might want to investigate."'}; {'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'extra'}; {'id': '130', 'type': 'dictionary', 'children': ['131', '134']}, {'id': '131', 'type': 'pair', 'children': ['132', '133']}; {'id': '132', 'type': 'string', 'children': [], 'value': "'formatter'"}, {'id': '133', 'type': 'string', 'children': [], 'value': "'container'"}; {'id': '134', 'type': 'pair', 'children': ['135', '136']}, {'id': '135', 'type': 'string', 'children': [], 'value': "'container'"}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '139', 'type': 'else_clause', 'children': ['140']}; {'id': '140', 'type': 'block', 'children': ['141']}, {'id': '141', 'type': 'if_statement', 'children': ['142', '147', '166']}; {'id': '142', 'type': 'call', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '146', 'type': 'argument_list', 'children': []}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '153', 'type': 'argument_list', 'children': ['154', '155']}; {'id': '154', 'type': 'string', 'children': [], 'value': '"is restarted and healthy."'}, {'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'extra'}, {'id': '157', 'type': 'dictionary', 'children': ['158', '161']}; {'id': '158', 'type': 'pair', 'children': ['159', '160']}, {'id': '159', 'type': 'string', 'children': [], 'value': "'formatter'"}; {'id': '160', 'type': 'string', 'children': [], 'value': "'container'"}, {'id': '161', 'type': 'pair', 'children': ['162', '163']}; {'id': '162', 'type': 'string', 'children': [], 'value': "'container'"}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '166', 'type': 'else_clause', 'children': ['167']}, {'id': '167', 'type': 'block', 'children': ['168', '186', '192']}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175']}; {'id': '174', 'type': 'string', 'children': [], 'value': '"failed to start."'}, {'id': '175', 'type': 'keyword_argument', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'extra'}, {'id': '177', 'type': 'dictionary', 'children': ['178', '181']}; {'id': '178', 'type': 'pair', 'children': ['179', '180']}, {'id': '179', 'type': 'string', 'children': [], 'value': "'formatter'"}; {'id': '180', 'type': 'string', 'children': [], 'value': "'container'"}, {'id': '181', 'type': 'pair', 'children': ['182', '183']}; {'id': '182', 'type': 'string', 'children': [], 'value': "'container'"}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'dump_logs'}, {'id': '191', 'type': 'argument_list', 'children': []}; {'id': '192', 'type': 'raise_statement', 'children': ['193']}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'string', 'children': [], 'value': '"The deployment for {0} on {1} went horribly wrong"'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '200', 'type': 'argument_list', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '204', 'type': 'call', 'children': ['205', '210']}, {'id': '205', 'type': 'attribute', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'geturl'}; {'id': '210', 'type': 'argument_list', 'children': []}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'call', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': '_service_map'}; {'id': '216', 'type': 'argument_list', 'children': ['217', '218', '219']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'service'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'anonymous'}, {'id': '219', 'type': 'keyword_argument', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'descending'}, {'id': '221', 'type': 'False', 'children': []} | def recall_service(self, service):
if not isinstance(service, Service):
raise TypeError("service must be of type Service.")
logger.warning("The deployment for {0} on {1} failed starting the rollback.".format(service.alias, self.url.geturl()))
def anonymous(anonymous_service):
if not isinstance(anonymous_service, Service):
raise TypeError("service must be an instance of Service.")
containers = self.find_previous_service_containers(anonymous_service)
if containers:
for name in list(anonymous_service.containers.keys()):
del anonymous_service.containers[name]
anonymous_service.cargo.delete()
for name, container in six.iteritems(containers):
if container.state().get('running'):
logger.info(
"is already running... Might want to investigate.",
extra={'formatter': 'container', 'container': container.name}
)
else:
if container.start():
logger.info(
"is restarted and healthy.",
extra={'formatter': 'container', 'container': container.name}
)
else:
logger.error(
"failed to start.",
extra={'formatter': 'container', 'container': container.name}
)
container.dump_logs()
raise Exception(
"The deployment for {0} on {1} went horribly wrong".format(container.name, self.url.geturl())
)
self._service_map(service, anonymous, descending=False) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_items'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': '__identity'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '24']}; {'id': '12', 'type': 'function_definition', 'children': ['13', '14', '16']}, {'id': '13', 'type': 'function_name', 'children': [], 'value': 'pairkey_key'}; {'id': '14', 'type': 'parameters', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'return_statement', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '33', '36']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '32', 'type': 'argument_list', 'children': []}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'pairkey_key'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'reverse'} | def sorted_items(d, key=__identity, reverse=False):
def pairkey_key(item):
return key(item[0])
return sorted(d.items(), key=pairkey_key, reverse=reverse) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '22']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_or_create_in_transaction'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16', '19']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'tsession'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'missing_columns'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'variable_columns'}; {'id': '12', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '13', 'type': 'default_parameter', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'updatable_columns'}, {'id': '15', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '16', 'type': 'default_parameter', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'only_use_supplied_columns'}; {'id': '18', 'type': 'False', 'children': []}, {'id': '19', 'type': 'default_parameter', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'read_only'}, {'id': '21', 'type': 'False', 'children': []}; {'id': '22', 'type': 'block', 'children': ['23', '25', '34', '52', '63', '74', '90', '178', '182', '213', '228', '242', '250']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'string', 'children': [], 'value': '\'\'\'\n Uses the SQLAlchemy model to retrieve an existing record based on the supplied field values or, if there is no\n existing record, to create a new database record.\n :param tsession: An SQLAlchemy transactioned session\n :param model: The name of the SQLAlchemy class representing the table\n :param values: A dict of values which will be used to populate the fields of the model\n :param missing_columns: Elements of missing_columns are expected to be fields in the model but are left blank regardless of whether they exist in values. This is useful for auto_increment fields.\n :param updatable_columns: If these are specified, they are treated as missing columns in the record matching and if a record is found, these fields will be updated\n :param variable_columns: If these are specified, they are treated as missing columns in the record matching but are not updated. A good use of these are for datetime fields which default to the current datetime\n :param read_only: If this is set then we query the database and return an instance if one exists but we do not create a new record.\n :return:\n Note: This function is a convenience function and is NOT efficient. The "tsession.query(model).filter_by(**pruned_values)"\n call is only (sometimes) efficient if an index exists on the keys of pruned_values. If any of the fields of pruned_values are\n large (even if otherwise deferred/loaded lazily) then you will incur a performance hit on lookup. You may need\n to reconsider any calls to this function in inner loops of your code.\'\'\''}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'copy'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'deepcopy'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}, {'id': '37', 'type': 'list_comprehension', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'attribute', 'children': ['47', '51']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'sqlalchemy_inspect'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '52', 'type': 'for_statement', 'children': ['53', '54', '55']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'missing_columns'}, {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'remove'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '63', 'type': 'for_statement', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'updatable_columns'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '74', 'type': 'for_statement', 'children': ['75', '76', '77']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'variable_columns'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'if_statement', 'children': ['79', '82']}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '81'], 'value': 'in'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'call', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '90', 'type': 'if_statement', 'children': ['91', '92', '115']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'only_use_supplied_columns'}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '106']}; {'id': '100', 'type': 'attribute', 'children': ['101', '105']}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'intersection'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'call', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '114', 'type': 'argument_list', 'children': []}, {'id': '115', 'type': 'else_clause', 'children': ['116']}; {'id': '116', 'type': 'block', 'children': ['117', '152']}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'unexpected_fields'}; {'id': '120', 'type': 'call', 'children': ['121', '147']}, {'id': '121', 'type': 'attribute', 'children': ['122', '146']}; {'id': '122', 'type': 'call', 'children': ['123', '141']}, {'id': '123', 'type': 'attribute', 'children': ['124', '140']}; {'id': '124', 'type': 'call', 'children': ['125', '135']}, {'id': '125', 'type': 'attribute', 'children': ['126', '134']}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '133', 'type': 'argument_list', 'children': []}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'difference'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'difference'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'call', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'variable_columns'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'difference'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '150', 'type': 'argument_list', 'children': ['151']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'updatable_columns'}; {'id': '152', 'type': 'if_statement', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'unexpected_fields'}; {'id': '154', 'type': 'block', 'children': ['155']}, {'id': '155', 'type': 'raise_statement', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'call', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'string', 'children': [], 'value': '"The fields \'{0}\' were passed but not found in the schema for table {1}."'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '163', 'type': 'argument_list', 'children': ['164', '173']}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'string', 'children': [], 'value': '"\', \'"'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '168', 'type': 'argument_list', 'children': ['169']}, {'id': '169', 'type': 'call', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'unexpected_fields'}, {'id': '173', 'type': 'subscript', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': '__dict__'}, {'id': '177', 'type': 'string', 'children': [], 'value': "'__tablename__'"}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'pruned_values'}, {'id': '181', 'type': 'dictionary', 'children': []}; {'id': '182', 'type': 'for_statement', 'children': ['183', '184', '200']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '184', 'type': 'call', 'children': ['185', '195']}, {'id': '185', 'type': 'attribute', 'children': ['186', '194']}; {'id': '186', 'type': 'call', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'call', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '193', 'type': 'argument_list', 'children': []}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'intersection'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '200', 'type': 'block', 'children': ['201', '207']}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'assignment', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '204', 'type': 'subscript', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'pruned_values'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '216', 'type': 'call', 'children': ['217', '225']}, {'id': '217', 'type': 'attribute', 'children': ['218', '224']}; {'id': '218', 'type': 'call', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'tsession'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'filter_by'}, {'id': '225', 'type': 'argument_list', 'children': ['226']}; {'id': '226', 'type': 'dictionary_splat', 'children': ['227']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'pruned_values'}; {'id': '228', 'type': 'if_statement', 'children': ['229', '236']}, {'id': '229', 'type': 'comparison_operator', 'children': ['230', '235'], 'value': '>'}; {'id': '230', 'type': 'call', 'children': ['231', '234']}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '234', 'type': 'argument_list', 'children': []}, {'id': '235', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '236', 'type': 'block', 'children': ['237']}, {'id': '237', 'type': 'raise_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '240', 'type': 'argument_list', 'children': ['241']}, {'id': '241', 'type': 'string', 'children': [], 'value': "'Multiple records were found with the search criteria.'"}; {'id': '242', 'type': 'expression_statement', 'children': ['243']}, {'id': '243', 'type': 'assignment', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '245', 'type': 'call', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'first'}, {'id': '249', 'type': 'argument_list', 'children': []}; {'id': '250', 'type': 'if_statement', 'children': ['251', '252', '279']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '252', 'type': 'block', 'children': ['253', '277']}, {'id': '253', 'type': 'if_statement', 'children': ['254', '257']}; {'id': '254', 'type': 'comparison_operator', 'children': ['255', '256'], 'value': '=='}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'read_only'}; {'id': '256', 'type': 'False', 'children': []}, {'id': '257', 'type': 'block', 'children': ['258', '271']}; {'id': '258', 'type': 'for_statement', 'children': ['259', '260', '261']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'updatable_columns'}, {'id': '261', 'type': 'block', 'children': ['262']}; {'id': '262', 'type': 'expression_statement', 'children': ['263']}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'setattr'}, {'id': '265', 'type': 'argument_list', 'children': ['266', '267', '268']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '268', 'type': 'subscript', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '271', 'type': 'expression_statement', 'children': ['272']}; {'id': '272', 'type': 'call', 'children': ['273', '276']}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'tsession'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'flush'}; {'id': '276', 'type': 'argument_list', 'children': []}, {'id': '277', 'type': 'return_statement', 'children': ['278']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '279', 'type': 'else_clause', 'children': ['280']}; {'id': '280', 'type': 'block', 'children': ['281', '346']}, {'id': '281', 'type': 'if_statement', 'children': ['282', '285']}; {'id': '282', 'type': 'comparison_operator', 'children': ['283', '284'], 'value': '=='}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'read_only'}; {'id': '284', 'type': 'False', 'children': []}, {'id': '285', 'type': 'block', 'children': ['286', '323', '331', '338', '344']}; {'id': '286', 'type': 'if_statement', 'children': ['287', '300']}, {'id': '287', 'type': 'comparison_operator', 'children': ['288', '296'], 'value': '!='}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'call', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'pruned_values'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '295', 'type': 'argument_list', 'children': []}; {'id': '296', 'type': 'call', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '298', 'type': 'argument_list', 'children': ['299']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '300', 'type': 'block', 'children': ['301']}, {'id': '301', 'type': 'raise_statement', 'children': ['302']}; {'id': '302', 'type': 'call', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '304', 'type': 'argument_list', 'children': ['305']}, {'id': '305', 'type': 'call', 'children': ['306', '309']}; {'id': '306', 'type': 'attribute', 'children': ['307', '308']}, {'id': '307', 'type': 'string', 'children': [], 'value': "'Some required fields are missing: {0}. Either supply these fields or add them to the missing_columns list.'"}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '309', 'type': 'argument_list', 'children': ['310']}; {'id': '310', 'type': 'call', 'children': ['311', '317']}, {'id': '311', 'type': 'attribute', 'children': ['312', '316']}; {'id': '312', 'type': 'call', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '314', 'type': 'argument_list', 'children': ['315']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'fieldnames'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'difference'}, {'id': '317', 'type': 'argument_list', 'children': ['318']}; {'id': '318', 'type': 'call', 'children': ['319', '322']}, {'id': '319', 'type': 'attribute', 'children': ['320', '321']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'pruned_values'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '322', 'type': 'argument_list', 'children': []}, {'id': '323', 'type': 'expression_statement', 'children': ['324']}; {'id': '324', 'type': 'assignment', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '326', 'type': 'call', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '328', 'type': 'argument_list', 'children': ['329']}, {'id': '329', 'type': 'dictionary_splat', 'children': ['330']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'pruned_values'}, {'id': '331', 'type': 'expression_statement', 'children': ['332']}; {'id': '332', 'type': 'call', 'children': ['333', '336']}, {'id': '333', 'type': 'attribute', 'children': ['334', '335']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'tsession'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '336', 'type': 'argument_list', 'children': ['337']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '338', 'type': 'expression_statement', 'children': ['339']}, {'id': '339', 'type': 'call', 'children': ['340', '343']}; {'id': '340', 'type': 'attribute', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'tsession'}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'flush'}, {'id': '343', 'type': 'argument_list', 'children': []}; {'id': '344', 'type': 'return_statement', 'children': ['345']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '346', 'type': 'return_statement', 'children': ['347']}, {'id': '347', 'type': 'None', 'children': []} | def get_or_create_in_transaction(tsession, model, values, missing_columns = [], variable_columns = [], updatable_columns = [], only_use_supplied_columns = False, read_only = False):
'''
Uses the SQLAlchemy model to retrieve an existing record based on the supplied field values or, if there is no
existing record, to create a new database record.
:param tsession: An SQLAlchemy transactioned session
:param model: The name of the SQLAlchemy class representing the table
:param values: A dict of values which will be used to populate the fields of the model
:param missing_columns: Elements of missing_columns are expected to be fields in the model but are left blank regardless of whether they exist in values. This is useful for auto_increment fields.
:param updatable_columns: If these are specified, they are treated as missing columns in the record matching and if a record is found, these fields will be updated
:param variable_columns: If these are specified, they are treated as missing columns in the record matching but are not updated. A good use of these are for datetime fields which default to the current datetime
:param read_only: If this is set then we query the database and return an instance if one exists but we do not create a new record.
:return:
Note: This function is a convenience function and is NOT efficient. The "tsession.query(model).filter_by(**pruned_values)"
call is only (sometimes) efficient if an index exists on the keys of pruned_values. If any of the fields of pruned_values are
large (even if otherwise deferred/loaded lazily) then you will incur a performance hit on lookup. You may need
to reconsider any calls to this function in inner loops of your code.'''
values = copy.deepcopy(values)
fieldnames = [c.name for c in list(sqlalchemy_inspect(model).columns)]
for c in missing_columns:
fieldnames.remove(c)
for c in updatable_columns:
fieldnames.remove(c)
for c in variable_columns:
if c in fieldnames:
fieldnames.remove(c)
if only_use_supplied_columns:
fieldnames = sorted(set(fieldnames).intersection(set(values.keys())))
else:
unexpected_fields = set(values.keys()).difference(set(fieldnames)).difference(set(variable_columns)).difference(set(updatable_columns))
if unexpected_fields:
raise Exception("The fields '{0}' were passed but not found in the schema for table {1}.".format("', '".join(sorted(unexpected_fields)), model.__dict__['__tablename__']))
pruned_values = {}
for k in set(values.keys()).intersection(set(fieldnames)):
v = values[k]
pruned_values[k] = v
instance = tsession.query(model).filter_by(**pruned_values)
if instance.count() > 1:
raise Exception('Multiple records were found with the search criteria.')
instance = instance.first()
if instance:
if read_only == False:
for c in updatable_columns:
setattr(instance, c, values[c])
tsession.flush()
return instance
else:
if read_only == False:
if sorted(pruned_values.keys()) != sorted(fieldnames):
raise Exception('Some required fields are missing: {0}. Either supply these fields or add them to the missing_columns list.'.format(set(fieldnames).difference(pruned_values.keys())))
instance = model(**pruned_values)
tsession.add(instance)
tsession.flush()
return instance
return None |
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{'id': '208', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'validators'} | def errors(self, instance):
if isinstance(instance, dict):
return self._validate(instance)
elif isinstance(instance, forms.BaseForm):
if instance.is_bound and instance.is_valid():
return self._validate(instance.cleaned_data)
return self._validate(dict(
[
(f, instance.initial.get(f, instance[f].value()))
for f in self.validators
]
))
elif isinstance(instance, formsets.BaseFormSet):
if instance.can_delete:
validate_forms = [
form for form in instance.initial_forms
if not instance._should_delete_form(form)
] + [
form for form in instance.extra_forms
if (form.has_changed() and
not instance._should_delete_form(form))
]
return [
self.errors(f)
for f in validate_forms
]
else:
validate_forms = instance.initial_forms + [
form for form in instance.extra_forms
if form.has_changed()
]
return [self.errors(f) for f in validate_forms]
elif isinstance(instance, models.Model):
return self._validate(dict(
[(f, getattr(instance, f)) for f in self.validators]
)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'multimatch'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'attrs'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'include_ids'}, {'id': '19', 'type': 'False', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '23', '25', '44', '63', '82', '219']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'''\n Iterator over relationship IDs that match a pattern of components, with multiple options provided for each component\n origin - (optional) origin of the relationship (similar to an RDF subject), or set of values. If omitted any origin will be matched.\n rel - (optional) type IRI of the relationship (similar to an RDF predicate), or set of values. If omitted any relationship will be matched.\n target - (optional) target of the relationship (similar to an RDF object), a boolean, floating point or unicode object, or set of values. If omitted any target will be matched.\n attrs - (optional) attribute mapping of relationship metadata, i.e. {attrname1: attrval1, attrname2: attrval2}. If any attribute is specified, an exact match is made (i.e. the attribute name and value must match).\n include_ids - If true include statement IDs with yield values\n '''"}, {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '28', 'type': 'conditional_expression', 'children': ['29', '30', '39'], 'value': 'if'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '30', 'type': 'boolean_operator', 'children': ['31', '34'], 'value': 'or'}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'is'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '33', 'type': 'None', 'children': []}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'list', 'children': ['43'], 'value': '[origin]'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '47', 'type': 'conditional_expression', 'children': ['48', '49', '58'], 'value': 'if'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '49', 'type': 'boolean_operator', 'children': ['50', '53'], 'value': 'or'}; {'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': 'is'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '52', 'type': 'None', 'children': []}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '55', 'type': 'argument_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'list', 'children': ['62'], 'value': '[rel]'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '66', 'type': 'conditional_expression', 'children': ['67', '68', '77'], 'value': 'if'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '68', 'type': 'boolean_operator', 'children': ['69', '72'], 'value': 'or'}, {'id': '69', 'type': 'comparison_operator', 'children': ['70', '71'], 'value': 'is'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '71', 'type': 'None', 'children': []}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '74', 'type': 'argument_list', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'list', 'children': ['81'], 'value': '[target]'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '82', 'type': 'for_statement', 'children': ['83', '86', '92']}, {'id': '83', 'type': 'pattern_list', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': '_relationships'}; {'id': '92', 'type': 'block', 'children': ['93', '97', '110', '123', '136', '171']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '96', 'type': 'True', 'children': []}, {'id': '97', 'type': 'if_statement', 'children': ['98', '105']}; {'id': '98', 'type': 'boolean_operator', 'children': ['99', '100'], 'value': 'and'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '100', 'type': 'comparison_operator', 'children': ['101', '104'], 'value': 'not'}, {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'ORIGIN'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '109', 'type': 'False', 'children': []}; {'id': '110', 'type': 'if_statement', 'children': ['111', '118']}, {'id': '111', 'type': 'boolean_operator', 'children': ['112', '113'], 'value': 'and'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '117'], 'value': 'not'}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'RELATIONSHIP'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '122', 'type': 'False', 'children': []}, {'id': '123', 'type': 'if_statement', 'children': ['124', '131']}; {'id': '124', 'type': 'boolean_operator', 'children': ['125', '126'], 'value': 'and'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '130'], 'value': 'not'}, {'id': '127', 'type': 'subscript', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'TARGET'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '135', 'type': 'False', 'children': []}; {'id': '136', 'type': 'if_statement', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'attrs'}; {'id': '138', 'type': 'block', 'children': ['139']}, {'id': '139', 'type': 'for_statement', 'children': ['140', '143', '148']}; {'id': '140', 'type': 'pattern_list', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'attrs'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '147', 'type': 'argument_list', 'children': []}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'if_statement', 'children': ['150', '166']}; {'id': '150', 'type': 'boolean_operator', 'children': ['151', '156'], 'value': 'or'}, {'id': '151', 'type': 'comparison_operator', 'children': ['152', '153'], 'value': 'not'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '153', 'type': 'subscript', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'ATTRIBUTES'}; {'id': '156', 'type': 'comparison_operator', 'children': ['157', '165'], 'value': '!='}, {'id': '157', 'type': 'call', 'children': ['158', '163']}; {'id': '158', 'type': 'attribute', 'children': ['159', '162']}, {'id': '159', 'type': 'subscript', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'ATTRIBUTES'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '166', 'type': 'block', 'children': ['167']}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '170', 'type': 'False', 'children': []}, {'id': '171', 'type': 'if_statement', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '173', 'type': 'block', 'children': ['174']}; {'id': '174', 'type': 'if_statement', 'children': ['175', '176', '198']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'include_ids'}; {'id': '176', 'type': 'block', 'children': ['177']}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'yield', 'children': ['179']}, {'id': '179', 'type': 'expression_list', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '181', 'type': 'tuple', 'children': ['182', '185', '188', '191']}; {'id': '182', 'type': 'subscript', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}; {'id': '184', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '185', 'type': 'subscript', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '187', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '188', 'type': 'subscript', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}; {'id': '190', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '191', 'type': 'call', 'children': ['192', '197']}; {'id': '192', 'type': 'attribute', 'children': ['193', '196']}, {'id': '193', 'type': 'subscript', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '195', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'copy'}, {'id': '197', 'type': 'argument_list', 'children': []}; {'id': '198', 'type': 'else_clause', 'children': ['199']}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'yield', 'children': ['202']}; {'id': '202', 'type': 'tuple', 'children': ['203', '206', '209', '212']}, {'id': '203', 'type': 'subscript', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '205', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '206', 'type': 'subscript', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}; {'id': '208', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}, {'id': '211', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '212', 'type': 'call', 'children': ['213', '218']}, {'id': '213', 'type': 'attribute', 'children': ['214', '217']}; {'id': '214', 'type': 'subscript', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'curr_rel'}; {'id': '216', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '218', 'type': 'argument_list', 'children': []}, {'id': '219', 'type': 'return_statement', 'children': []} | def multimatch(self, origin=None, rel=None, target=None, attrs=None, include_ids=False):
'''
Iterator over relationship IDs that match a pattern of components, with multiple options provided for each component
origin - (optional) origin of the relationship (similar to an RDF subject), or set of values. If omitted any origin will be matched.
rel - (optional) type IRI of the relationship (similar to an RDF predicate), or set of values. If omitted any relationship will be matched.
target - (optional) target of the relationship (similar to an RDF object), a boolean, floating point or unicode object, or set of values. If omitted any target will be matched.
attrs - (optional) attribute mapping of relationship metadata, i.e. {attrname1: attrval1, attrname2: attrval2}. If any attribute is specified, an exact match is made (i.e. the attribute name and value must match).
include_ids - If true include statement IDs with yield values
'''
raise NotImplementedError
origin = origin if origin is None or isinstance(origin, set) else set([origin])
rel = rel if rel is None or isinstance(rel, set) else set([rel])
target = target if target is None or isinstance(target, set) else set([target])
for index, curr_rel in enumerate(self._relationships):
matches = True
if origin and curr_rel[ORIGIN] not in origin:
matches = False
if rel and curr_rel[RELATIONSHIP] not in rel:
matches = False
if target and curr_rel[TARGET] not in target:
matches = False
if attrs:
for k, v in attrs.items():
if k not in curr_rel[ATTRIBUTES] or curr_rel[ATTRIBUTES].get(k) != v:
matches = False
if matches:
if include_ids:
yield index, (curr_rel[0], curr_rel[1], curr_rel[2], curr_rel[3].copy())
else:
yield (curr_rel[0], curr_rel[1], curr_rel[2], curr_rel[3].copy())
return |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_qtls_from_mapqtl_data'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'matrix'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'inputfile'}, {'id': '7', 'type': 'block', 'children': ['8', '27', '31', '35', '136', '167']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'trait_name'}, {'id': '11', 'type': 'subscript', 'children': ['12', '26']}; {'id': '12', 'type': 'call', 'children': ['13', '24']}, {'id': '13', 'type': 'attribute', 'children': ['14', '23']}; {'id': '14', 'type': 'subscript', 'children': ['15', '22']}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'inputfile'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'string', 'children': [], 'value': "')_'"}, {'id': '21', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '22', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'string', 'children': [], 'value': "'.mqo'"}; {'id': '26', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'qtls'}; {'id': '30', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '34', 'type': 'None', 'children': []}, {'id': '35', 'type': 'for_statement', 'children': ['36', '37', '42']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'matrix'}, {'id': '39', 'type': 'slice', 'children': ['40', '41']}; {'id': '40', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '41', 'type': 'colon', 'children': []}; {'id': '42', 'type': 'block', 'children': ['43', '52', '91', '104', '117']}, {'id': '43', 'type': 'if_statement', 'children': ['44', '47']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': 'is'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '46', 'type': 'None', 'children': []}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '52', 'type': 'if_statement', 'children': ['53', '60']}, {'id': '53', 'type': 'comparison_operator', 'children': ['54', '57'], 'value': '!='}; {'id': '54', 'type': 'subscript', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '56', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '57', 'type': 'subscript', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '59', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '60', 'type': 'block', 'children': ['61', '87']}, {'id': '61', 'type': 'if_statement', 'children': ['62', '73']}; {'id': '62', 'type': 'comparison_operator', 'children': ['63', '69'], 'value': '>'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'threshold'}, {'id': '73', 'type': 'block', 'children': ['74', '80']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '79']}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'trait_name'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'qtls'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '91', 'type': 'if_statement', 'children': ['92', '97']}; {'id': '92', 'type': 'comparison_operator', 'children': ['93', '96'], 'value': '=='}, {'id': '93', 'type': 'subscript', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '95', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '96', 'type': 'string', 'children': [], 'value': "''"}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '103']}; {'id': '100', 'type': 'subscript', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '103', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '104', 'type': 'if_statement', 'children': ['105', '110']}, {'id': '105', 'type': 'comparison_operator', 'children': ['106', '109'], 'value': '=='}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '109', 'type': 'string', 'children': [], 'value': "''"}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '116']}, {'id': '113', 'type': 'subscript', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '115', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '116', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '117', 'type': 'if_statement', 'children': ['118', '131']}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '125'], 'value': '>'}, {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'subscript', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '124', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'subscript', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '130', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '136', 'type': 'if_statement', 'children': ['137', '148']}, {'id': '137', 'type': 'comparison_operator', 'children': ['138', '144'], 'value': '>'}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'subscript', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '143', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '148', 'type': 'block', 'children': ['149', '155']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '154']}, {'id': '151', 'type': 'subscript', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'trait_name'}, {'id': '155', 'type': 'if_statement', 'children': ['156', '159']}; {'id': '156', 'type': 'comparison_operator', 'children': ['157', '158'], 'value': 'not'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'qtl'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'qtls'}, {'id': '159', 'type': 'block', 'children': ['160']}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'qtls'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'qtl'}, {'id': '167', 'type': 'return_statement', 'children': ['168']} | def get_qtls_from_mapqtl_data(matrix, threshold, inputfile):
trait_name = inputfile.split(')_', 1)[1].split('.mqo')[0]
qtls = []
qtl = None
for entry in matrix[1:]:
if qtl is None:
qtl = entry
if qtl[1] != entry[1]:
if float(qtl[4]) > float(threshold):
qtl[0] = trait_name
qtls.append(qtl)
qtl = entry
if entry[4] == '':
entry[4] = 0
if qtl[4] == '':
qtl[4] = 0
if float(entry[4]) > float(qtl[4]):
qtl = entry
if float(qtl[4]) > float(threshold):
qtl[0] = trait_name
if qtl not in qtls:
qtls.append(qtl)
return qtls |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'merge_range_pairs'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'prs'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '12', '23', '30', '34', '38', '144']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''Takes in a list of pairs specifying ranges and returns a sorted list of merged, sorted ranges.'''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'new_prs'}, {'id': '11', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'sprs'}, {'id': '15', 'type': 'list_comprehension', 'children': ['16', '20']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '20', 'type': 'for_in_clause', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'prs'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sprs'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sprs'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'merged'}, {'id': '33', 'type': 'False', 'children': []}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '37', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '38', 'type': 'while_statement', 'children': ['39', '45']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': '<'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sprs'}, {'id': '45', 'type': 'block', 'children': ['46', '52', '61', '128', '140']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'newx'}, {'id': '49', 'type': 'binary_operator', 'children': ['50', '51'], 'value': '+'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '51', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'new_pair'}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'sprs'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '61', 'type': 'for_statement', 'children': ['62', '63', '73']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '69']}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '68'], 'value': '+'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'sprs'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'if_statement', 'children': ['75', '89']}, {'id': '75', 'type': 'comparison_operator', 'children': ['76', '79', '86'], 'value': '<='}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'binary_operator', 'children': ['80', '85'], 'value': '-'}; {'id': '80', 'type': 'subscript', 'children': ['81', '84']}, {'id': '81', 'type': 'subscript', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'sprs'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '84', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '86', 'type': 'subscript', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '89', 'type': 'block', 'children': ['90', '106', '122']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '95']}; {'id': '92', 'type': 'subscript', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '97', 'type': 'argument_list', 'children': ['98', '101']}; {'id': '98', 'type': 'subscript', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '100', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '101', 'type': 'subscript', 'children': ['102', '105']}; {'id': '102', 'type': 'subscript', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'sprs'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '105', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '111']}; {'id': '108', 'type': 'subscript', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '110', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '113', 'type': 'argument_list', 'children': ['114', '117']}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '116', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '117', 'type': 'subscript', 'children': ['118', '121']}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'sprs'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '121', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'newx'}, {'id': '125', 'type': 'binary_operator', 'children': ['126', '127'], 'value': '+'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '127', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '128', 'type': 'if_statement', 'children': ['129', '132']}, {'id': '129', 'type': 'comparison_operator', 'children': ['130', '131'], 'value': 'not'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'new_pair'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'new_prs'}; {'id': '132', 'type': 'block', 'children': ['133']}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'new_prs'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'new_pair'}; {'id': '140', 'type': 'expression_statement', 'children': ['141']}, {'id': '141', 'type': 'assignment', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'newx'}; {'id': '144', 'type': 'return_statement', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'new_prs'} | def merge_range_pairs(prs):
'''Takes in a list of pairs specifying ranges and returns a sorted list of merged, sorted ranges.'''
new_prs = []
sprs = [sorted(p) for p in prs]
sprs = sorted(sprs)
merged = False
x = 0
while x < len(sprs):
newx = x + 1
new_pair = list(sprs[x])
for y in range(x + 1, len(sprs)):
if new_pair[0] <= sprs[y][0] - 1 <= new_pair[1]:
new_pair[0] = min(new_pair[0], sprs[y][0])
new_pair[1] = max(new_pair[1], sprs[y][1])
newx = y + 1
if new_pair not in new_prs:
new_prs.append(new_pair)
x = newx
return new_prs |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '29']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'n_agents'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}, {'id': '13', 'type': 'dictionary', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'env_cls'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'Environment'}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'env_kwargs'}, {'id': '19', 'type': 'dictionary', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'conns'}, {'id': '25', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'log_folder'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'block', 'children': ['30', '52', '69', '126', '136', '140', '225', '239']}; {'id': '30', 'type': 'if_statement', 'children': ['31', '37']}, {'id': '31', 'type': 'not_operator', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'issubclass'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'env_cls'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'Environment'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'raise_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': '"Environment class must be derived from ({}"'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'attribute', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'Environment'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '52', 'type': 'if_statement', 'children': ['53', '63']}, {'id': '53', 'type': 'boolean_operator', 'children': ['54', '57'], 'value': 'and'}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'is'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '56', 'type': 'None', 'children': []}, {'id': '57', 'type': 'not_operator', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '62', 'type': 'string', 'children': [], 'value': "'__call__'"}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'raise_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'string', 'children': [], 'value': '"Callback must be callable."'}, {'id': '69', 'type': 'if_statement', 'children': ['70', '75', '102']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '72', 'type': 'argument_list', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}; {'id': '74', 'type': 'string', 'children': [], 'value': "'__iter__'"}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'for_statement', 'children': ['77', '78', '79']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'if_statement', 'children': ['81', '87']}, {'id': '81', 'type': 'not_operator', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'issubclass'}; {'id': '84', 'type': 'argument_list', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'CreativeAgent'}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'raise_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'string', 'children': [], 'value': '"All agent classes must be derived from {}"'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'attribute', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'CreativeAgent'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '102', 'type': 'else_clause', 'children': ['103']}, {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'if_statement', 'children': ['105', '111']}, {'id': '105', 'type': 'not_operator', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'issubclass'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'CreativeAgent'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'raise_statement', 'children': ['113']}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'string', 'children': [], 'value': '"Agent class must be derived from {}"'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'attribute', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'CreativeAgent'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'assignment', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'env'}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'env_cls'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'create'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'dictionary_splat', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'env_kwargs'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'agents'}, {'id': '139', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '140', 'type': 'if_statement', 'children': ['141', '146', '196']}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}, {'id': '145', 'type': 'string', 'children': [], 'value': "'__iter__'"}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'for_statement', 'children': ['148', '149', '156']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '149', 'type': 'call', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'call', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'n_agents'}; {'id': '156', 'type': 'block', 'children': ['157', '165', '173']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '164']}, {'id': '159', 'type': 'subscript', 'children': ['160', '163']}; {'id': '160', 'type': 'subscript', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '163', 'type': 'string', 'children': [], 'value': "'environment'"}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'env'}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '172']}, {'id': '167', 'type': 'subscript', 'children': ['168', '171']}; {'id': '168', 'type': 'subscript', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '171', 'type': 'string', 'children': [], 'value': "'log_folder'"}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'log_folder'}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'agents'}; {'id': '176', 'type': 'binary_operator', 'children': ['177', '178'], 'value': '+'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'agents'}; {'id': '178', 'type': 'list_comprehension', 'children': ['179', '188']}, {'id': '179', 'type': 'call', 'children': ['180', '183']}; {'id': '180', 'type': 'subscript', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'dictionary_splat', 'children': ['185']}, {'id': '185', 'type': 'subscript', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '188', 'type': 'for_in_clause', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'subscript', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'n_agents'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '196', 'type': 'else_clause', 'children': ['197']}, {'id': '197', 'type': 'block', 'children': ['198', '204', '210']}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'assignment', 'children': ['200', '203']}; {'id': '200', 'type': 'subscript', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}; {'id': '202', 'type': 'string', 'children': [], 'value': "'environment'"}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '209']}; {'id': '206', 'type': 'subscript', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}; {'id': '208', 'type': 'string', 'children': [], 'value': "'log_folder'"}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'log_folder'}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'agents'}, {'id': '213', 'type': 'list_comprehension', 'children': ['214', '219']}; {'id': '214', 'type': 'call', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}; {'id': '216', 'type': 'argument_list', 'children': ['217']}, {'id': '217', 'type': 'dictionary_splat', 'children': ['218']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'agent_kwargs'}, {'id': '219', 'type': 'for_in_clause', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '221', 'type': 'call', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'n_agents'}, {'id': '225', 'type': 'if_statement', 'children': ['226', '229']}; {'id': '226', 'type': 'comparison_operator', 'children': ['227', '228'], 'value': '>'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'conns'}; {'id': '228', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '229', 'type': 'block', 'children': ['230']}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'call', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'create_random_connections'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'keyword_argument', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'conns'}, {'id': '239', 'type': 'return_statement', 'children': ['240']}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'Simulation'}; {'id': '242', 'type': 'argument_list', 'children': ['243', '244', '245']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'callback'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'log_folder'} | def create(self, agent_cls=None, n_agents=10, agent_kwargs={},
env_cls=Environment, env_kwargs={}, callback=None, conns=0,
log_folder=None):
if not issubclass(env_cls, Environment):
raise TypeError("Environment class must be derived from ({}"
.format(Environment.__class__.__name__))
if callback is not None and not hasattr(callback, '__call__'):
raise TypeError("Callback must be callable.")
if hasattr(agent_cls, '__iter__'):
for e in agent_cls:
if not issubclass(e, CreativeAgent):
raise TypeError("All agent classes must be derived from {}"
.format(CreativeAgent.__class__.__name__))
else:
if not issubclass(agent_cls, CreativeAgent):
raise TypeError("Agent class must be derived from {}"
.format(CreativeAgent.__class__.__name__))
env = env_cls.create(**env_kwargs)
agents = []
if hasattr(agent_cls, '__iter__'):
for i in range(len(n_agents)):
agent_kwargs[i]['environment'] = env
agent_kwargs[i]['log_folder'] = log_folder
agents = agents + [agent_cls[i](**agent_kwargs[i]) for e in
range(n_agents[i])]
else:
agent_kwargs['environment'] = env
agent_kwargs['log_folder'] = log_folder
agents = [agent_cls(**agent_kwargs) for e in range(n_agents)]
if conns > 0:
env.create_random_connections(n=conns)
return Simulation(env, callback, log_folder) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'callproc'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'procname'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '8', 'type': 'tuple', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'quiet'}, {'id': '11', 'type': 'False', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'expect_return_value'}; {'id': '14', 'type': 'False', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16', '22', '26', '30', '34', '38', '89', '105', '122', '272', '322']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'augmented_assignment', 'children': ['18', '21'], 'value': '+='}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'procedures_run'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '25', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'errcode'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'caughte'}, {'id': '33', 'type': 'None', 'children': []}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'out_param_indices'}, {'id': '37', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '38', 'type': 'for_statement', 'children': ['39', '40', '47']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '47', 'type': 'block', 'children': ['48', '54']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '51', 'type': 'subscript', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '54', 'type': 'if_statement', 'children': ['55', '70']}, {'id': '55', 'type': 'boolean_operator', 'children': ['56', '65'], 'value': 'and'}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '61'], 'value': '=='}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'string', 'children': [], 'value': "''"}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '69'], 'value': '=='}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '69', 'type': 'string', 'children': [], 'value': "'@'"}; {'id': '70', 'type': 'block', 'children': ['71', '82']}, {'id': '71', 'type': 'assert_statement', 'children': ['72']}; {'id': '72', 'type': 'parenthesized_expression', 'children': ['73']}, {'id': '73', 'type': 'comparison_operator', 'children': ['74', '80'], 'value': '=='}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '80', 'type': 'unary_operator', 'children': ['81'], 'value': '-'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'out_param_indices'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '89', 'type': 'if_statement', 'children': ['90', '97']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': 'not'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'procname'}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'list_stored_procedures'}; {'id': '96', 'type': 'argument_list', 'children': []}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'raise_statement', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'binary_operator', 'children': ['103', '104'], 'value': '%'}, {'id': '103', 'type': 'string', 'children': [], 'value': '"The stored procedure \'%s\' does not exist."'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'procname'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '114']}; {'id': '106', 'type': 'not_operator', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '111', 'type': 'argument_list', 'children': ['112', '113']}; {'id': '112', 'type': 'string', 'children': [], 'value': '"^\\s*\\w+\\s*$"'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'procname'}; {'id': '114', 'type': 'block', 'children': ['115']}, {'id': '115', 'type': 'raise_statement', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'binary_operator', 'children': ['120', '121'], 'value': '%'}; {'id': '120', 'type': 'string', 'children': [], 'value': '"Expected a stored procedure name in callproc but received \'%s\'."'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'procname'}; {'id': '122', 'type': 'while_statement', 'children': ['123', '128']}, {'id': '123', 'type': 'comparison_operator', 'children': ['124', '125'], 'value': '<'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'numTries'}; {'id': '128', 'type': 'block', 'children': ['129', '133']}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'augmented_assignment', 'children': ['131', '132'], 'value': '+='}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '132', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '133', 'type': 'try_statement', 'children': ['134', '234', '257']}; {'id': '134', 'type': 'block', 'children': ['135', '141', '151', '167', '177', '188', '194', '198', '232']}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': '_get_connection'}; {'id': '140', 'type': 'argument_list', 'children': []}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '144', 'type': 'call', 'children': ['145', '150']}, {'id': '145', 'type': 'attribute', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'connection'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '150', 'type': 'argument_list', 'children': []}, {'id': '151', 'type': 'if_statement', 'children': ['152', '161']}; {'id': '152', 'type': 'comparison_operator', 'children': ['153', '157'], 'value': '!='}, {'id': '153', 'type': 'call', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'tuple', 'children': []}, {'id': '161', 'type': 'block', 'children': ['162']}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}, {'id': '163', 'type': 'assignment', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '165', 'type': 'tuple', 'children': ['166']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'errcode'}; {'id': '170', 'type': 'call', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'callproc'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'procname'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'lastrowid'}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'lastrowid'}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'call', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'close'}, {'id': '193', 'type': 'argument_list', 'children': []}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'assignment', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'out_param_results'}, {'id': '197', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '198', 'type': 'if_statement', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'out_param_indices'}; {'id': '200', 'type': 'block', 'children': ['201']}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'assignment', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'out_param_results'}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'execute'}; {'id': '208', 'type': 'argument_list', 'children': ['209']}, {'id': '209', 'type': 'binary_operator', 'children': ['210', '211'], 'value': '%'}; {'id': '210', 'type': 'string', 'children': [], 'value': "'SELECT %s'"}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'string', 'children': [], 'value': '", "'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '215', 'type': 'argument_list', 'children': ['216']}; {'id': '216', 'type': 'list_comprehension', 'children': ['217', '229']}, {'id': '217', 'type': 'binary_operator', 'children': ['218', '219'], 'value': '%'}; {'id': '218', 'type': 'string', 'children': [], 'value': "'@_%s_%d AS %s'"}, {'id': '219', 'type': 'tuple', 'children': ['220', '221', '222']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'procname'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'pindex'}; {'id': '222', 'type': 'subscript', 'children': ['223', '226']}, {'id': '223', 'type': 'subscript', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'pindex'}; {'id': '226', 'type': 'slice', 'children': ['227', '228']}, {'id': '227', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '228', 'type': 'colon', 'children': []}, {'id': '229', 'type': 'for_in_clause', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'pindex'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'out_param_indices'}; {'id': '232', 'type': 'return_statement', 'children': ['233']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'out_param_results'}; {'id': '234', 'type': 'except_clause', 'children': ['235', '238', '239']}, {'id': '235', 'type': 'attribute', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'MySQLdb'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'OperationalError'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '239', 'type': 'block', 'children': ['240', '246', '252', '256']}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'call', 'children': ['242', '245']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': '_close_connection'}, {'id': '245', 'type': 'argument_list', 'children': []}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'assignment', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'errcode'}, {'id': '249', 'type': 'subscript', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '251', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '252', 'type': 'expression_statement', 'children': ['253']}, {'id': '253', 'type': 'assignment', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'caughte'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '256', 'type': 'continue_statement', 'children': []}, {'id': '257', 'type': 'except_clause', 'children': ['258']}; {'id': '258', 'type': 'block', 'children': ['259', '265', '271']}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'call', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': '_close_connection'}; {'id': '264', 'type': 'argument_list', 'children': []}, {'id': '265', 'type': 'expression_statement', 'children': ['266']}; {'id': '266', 'type': 'call', 'children': ['267', '270']}, {'id': '267', 'type': 'attribute', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'traceback'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'print_exc'}; {'id': '270', 'type': 'argument_list', 'children': []}, {'id': '271', 'type': 'break_statement', 'children': []}; {'id': '272', 'type': 'if_statement', 'children': ['273', '275']}, {'id': '273', 'type': 'not_operator', 'children': ['274']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'quiet'}, {'id': '275', 'type': 'block', 'children': ['276', '298', '314']}; {'id': '276', 'type': 'expression_statement', 'children': ['277']}, {'id': '277', 'type': 'call', 'children': ['278', '283']}; {'id': '278', 'type': 'attribute', 'children': ['279', '282']}, {'id': '279', 'type': 'attribute', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '283', 'type': 'argument_list', 'children': ['284']}; {'id': '284', 'type': 'binary_operator', 'children': ['285', '286'], 'value': '%'}, {'id': '285', 'type': 'string', 'children': [], 'value': '"\\nSQL execution error call stored procedure %s at %s:"'}; {'id': '286', 'type': 'tuple', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'procname'}; {'id': '288', 'type': 'call', 'children': ['289', '296']}, {'id': '289', 'type': 'attribute', 'children': ['290', '295']}; {'id': '290', 'type': 'call', 'children': ['291', '294']}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'now'}; {'id': '294', 'type': 'argument_list', 'children': []}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'strftime'}; {'id': '296', 'type': 'argument_list', 'children': ['297']}, {'id': '297', 'type': 'string', 'children': [], 'value': '"%Y-%m-%d %H:%M:%S"'}; {'id': '298', 'type': 'expression_statement', 'children': ['299']}, {'id': '299', 'type': 'call', 'children': ['300', '305']}; {'id': '300', 'type': 'attribute', 'children': ['301', '304']}, {'id': '301', 'type': 'attribute', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'binary_operator', 'children': ['307', '308'], 'value': '%'}, {'id': '307', 'type': 'string', 'children': [], 'value': '"\\nErrorcode/Error: %d - \'%s\'.\\n"'}; {'id': '308', 'type': 'tuple', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'errcode'}; {'id': '310', 'type': 'call', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '312', 'type': 'argument_list', 'children': ['313']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'caughte'}; {'id': '314', 'type': 'expression_statement', 'children': ['315']}, {'id': '315', 'type': 'call', 'children': ['316', '321']}; {'id': '316', 'type': 'attribute', 'children': ['317', '320']}, {'id': '317', 'type': 'attribute', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'flush'}, {'id': '321', 'type': 'argument_list', 'children': []}; {'id': '322', 'type': 'raise_statement', 'children': ['323']}, {'id': '323', 'type': 'call', 'children': ['324', '327']}; {'id': '324', 'type': 'attribute', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'MySQLdb'}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'OperationalError'}, {'id': '327', 'type': 'argument_list', 'children': ['328']} | def callproc(self, procname, parameters=(), quiet=False, expect_return_value=False):
self.procedures_run += 1
i = 0
errcode = 0
caughte = None
out_param_indices = []
for j in range(len(parameters)):
p = parameters[j]
if type(p) == type('') and p[0] == '@':
assert(p.find(' ') == -1)
out_param_indices.append(j)
if procname not in self.list_stored_procedures():
raise Exception("The stored procedure '%s' does not exist." % procname)
if not re.match("^\s*\w+\s*$", procname):
raise Exception("Expected a stored procedure name in callproc but received '%s'." % procname)
while i < self.numTries:
i += 1
try:
self._get_connection()
cursor = self.connection.cursor()
if type(parameters) != type(()):
parameters = (parameters,)
errcode = cursor.callproc(procname, parameters)
self.lastrowid = int(cursor.lastrowid)
cursor.close()
out_param_results = []
if out_param_indices:
out_param_results = self.execute('SELECT %s' % ", ".join(['@_%s_%d AS %s' % (procname, pindex, parameters[pindex][1:]) for pindex in out_param_indices]))
return out_param_results
except MySQLdb.OperationalError, e:
self._close_connection()
errcode = e[0]
caughte = e
continue
except:
self._close_connection()
traceback.print_exc()
break
if not quiet:
sys.stderr.write("\nSQL execution error call stored procedure %s at %s:" % (
procname, datetime.now().strftime("%Y-%m-%d %H:%M:%S")))
sys.stderr.write("\nErrorcode/Error: %d - '%s'.\n" % (errcode, str(caughte)))
sys.stderr.flush()
raise MySQLdb.OperationalError(caughte) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_insert_dict_string'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'tblname'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'PKfields'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '12', 'type': 'None', 'children': []}, {'id': '13', 'type': 'default_parameter', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'check_existing'}, {'id': '15', 'type': 'False', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17', '19', '35', '51', '55', '59']}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'''The main function of the insert_dict functions.\n This creates and returns the SQL query and parameters used by the other functions but does not insert any data into the database.\n Simple function for inserting a dictionary whose keys match the fieldnames of tblname. The function returns two values, the\n second of which is a dict containing the primary keys of the record. If a record already exists then no insertion is performed and\n (False, the dictionary of existing primary keys) is returned. Otherwise, the record is inserted into the database and (True, d)\n is returned.'''"}, {'id': '19', 'type': 'if_statement', 'children': ['20', '29']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '25'], 'value': '=='}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'PKfields'}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': '""'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'PKfields'}, {'id': '33', 'type': 'list', 'children': ['34'], 'value': '[PKfields]'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'PKfields'}, {'id': '35', 'type': 'if_statement', 'children': ['36', '39']}; {'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': '=='}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '38', 'type': 'None', 'children': []}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '50', 'type': 'argument_list', 'children': []}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '54', 'type': 'None', 'children': []}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'SQL'}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'try_statement', 'children': ['60', '207']}; {'id': '60', 'type': 'block', 'children': ['61', '65', '69', '109', '117', '125', '129', '162', '189', '202']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'wherestr'}; {'id': '64', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'PKvalues'}; {'id': '68', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '69', 'type': 'for_statement', 'children': ['70', '71', '72']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'PKfield'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'PKfields'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'if_statement', 'children': ['74', '79', '89']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '78'], 'value': '=='}, {'id': '75', 'type': 'subscript', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'PKfield'}; {'id': '78', 'type': 'None', 'children': []}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'wherestr'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'binary_operator', 'children': ['87', '88'], 'value': '%'}, {'id': '87', 'type': 'string', 'children': [], 'value': '"%s IS NULL"'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'PKfield'}, {'id': '89', 'type': 'else_clause', 'children': ['90']}; {'id': '90', 'type': 'block', 'children': ['91', '100']}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'wherestr'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'binary_operator', 'children': ['98', '99'], 'value': '%'}; {'id': '98', 'type': 'string', 'children': [], 'value': '"%s=%%s"'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'PKfield'}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'PKvalues'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'PKfield'}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'PKfields'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '114', 'type': 'argument_list', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'PKfields'}; {'id': '116', 'type': 'string', 'children': [], 'value': '","'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'wherestr'}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'wherestr'}; {'id': '124', 'type': 'string', 'children': [], 'value': '" AND "'}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'record_exists'}; {'id': '128', 'type': 'None', 'children': []}, {'id': '129', 'type': 'if_statement', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'check_existing'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'record_exists'}, {'id': '135', 'type': 'not_operator', 'children': ['136']}; {'id': '136', 'type': 'parenthesized_expression', 'children': ['137']}, {'id': '137', 'type': 'not_operator', 'children': ['138']}; {'id': '138', 'type': 'parenthesized_expression', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'execute_select'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '153', '159']}; {'id': '144', 'type': 'binary_operator', 'children': ['145', '150'], 'value': '+'}, {'id': '145', 'type': 'binary_operator', 'children': ['146', '147'], 'value': '%'}; {'id': '146', 'type': 'string', 'children': [], 'value': '"SELECT %s FROM %s"'}, {'id': '147', 'type': 'tuple', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'PKfields'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'tblname'}; {'id': '150', 'type': 'binary_operator', 'children': ['151', '152'], 'value': '%'}, {'id': '151', 'type': 'string', 'children': [], 'value': '" WHERE %s"'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'wherestr'}, {'id': '153', 'type': 'keyword_argument', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'PKvalues'}, {'id': '159', 'type': 'keyword_argument', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'locked'}, {'id': '161', 'type': 'False', 'children': []}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}, {'id': '163', 'type': 'assignment', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'SQL'}, {'id': '165', 'type': 'binary_operator', 'children': ['166', '167'], 'value': '%'}; {'id': '166', 'type': 'string', 'children': [], 'value': "'INSERT INTO %s (%s) VALUES (%s)'"}, {'id': '167', 'type': 'tuple', 'children': ['168', '169', '174']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'tblname'}, {'id': '169', 'type': 'call', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '171', 'type': 'argument_list', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '173', 'type': 'string', 'children': [], 'value': '", "'}; {'id': '174', 'type': 'call', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '176', 'type': 'argument_list', 'children': ['177', '188']}, {'id': '177', 'type': 'list_comprehension', 'children': ['178', '179']}; {'id': '178', 'type': 'string', 'children': [], 'value': "'%s'"}, {'id': '179', 'type': 'for_in_clause', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '181', 'type': 'call', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'call', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '186', 'type': 'argument_list', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '188', 'type': 'string', 'children': [], 'value': "','"}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '192', 'type': 'call', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'list_comprehension', 'children': ['196', '199']}; {'id': '196', 'type': 'subscript', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '199', 'type': 'for_in_clause', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '202', 'type': 'return_statement', 'children': ['203']}, {'id': '203', 'type': 'expression_list', 'children': ['204', '205', '206']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'SQL'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'record_exists'}, {'id': '207', 'type': 'except_clause', 'children': ['208', '209', '210']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '210', 'type': 'block', 'children': ['211']}, {'id': '211', 'type': 'raise_statement', 'children': ['212']}; {'id': '212', 'type': 'call', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '217'], 'value': '%'}; {'id': '216', 'type': 'string', 'children': [], 'value': '"Error occurred during database insertion: \'%s\'. %s"'}, {'id': '217', 'type': 'tuple', 'children': ['218', '222']}; {'id': '218', 'type': 'call', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '222', 'type': 'call', 'children': ['223', '226']}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'traceback'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'format_exc'} | def create_insert_dict_string(self, tblname, d, PKfields=[], fields=None, check_existing = False):
'''The main function of the insert_dict functions.
This creates and returns the SQL query and parameters used by the other functions but does not insert any data into the database.
Simple function for inserting a dictionary whose keys match the fieldnames of tblname. The function returns two values, the
second of which is a dict containing the primary keys of the record. If a record already exists then no insertion is performed and
(False, the dictionary of existing primary keys) is returned. Otherwise, the record is inserted into the database and (True, d)
is returned.'''
if type(PKfields) == type(""):
PKfields = [PKfields]
if fields == None:
fields = sorted(d.keys())
values = None
SQL = None
try:
wherestr = []
PKvalues = []
for PKfield in PKfields:
if d[PKfield] == None:
wherestr.append("%s IS NULL" % PKfield)
else:
wherestr.append("%s=%%s" % PKfield)
PKvalues.append(d[PKfield])
PKfields = join(PKfields, ",")
wherestr = join(wherestr, " AND ")
record_exists = None
if check_existing:
record_exists = not(not(self.execute_select("SELECT %s FROM %s" % (PKfields, tblname) + " WHERE %s" % wherestr, parameters=tuple(PKvalues), locked = False)))
SQL = 'INSERT INTO %s (%s) VALUES (%s)' % (
tblname, join(fields, ", "), join(['%s' for x in range(len(fields))], ','))
values = tuple([d[k] for k in fields])
return SQL, values, record_exists
except Exception, e:
raise Exception("Error occurred during database insertion: '%s'. %s" % (str(e), traceback.format_exc())) |
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@memo_Y
def _fixed_point(fixed_point_fun):
def __fixed_point(collected, new):
diff = minus(new, collected)
if is_zero(diff):
return collected
return fixed_point_fun(plus(collected, diff), f(diff))
return __fixed_point
return _fixed_point(x, f(x)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'connections_from_graph'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'env'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'edge_data'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '29', '42', '53', '84', '91', '97', '105']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '21']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'issubclass'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '__class__'}; {'id': '18', 'type': 'tuple', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'Graph'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'DiGraph'}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'raise_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'concatenated_string', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': '"Graph structure must be derived from Networkx\'s "'}; {'id': '28', 'type': 'string', 'children': [], 'value': '"Graph or DiGraph."'}, {'id': '29', 'type': 'if_statement', 'children': ['30', '36']}; {'id': '30', 'type': 'not_operator', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'env'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'get_agents'"}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'raise_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'string', 'children': [], 'value': '"Parameter \'env\' must have get_agents."'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'addrs'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'get_agents'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'addr'}; {'id': '52', 'type': 'True', 'children': []}, {'id': '53', 'type': 'if_statement', 'children': ['54', '63']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '59'], 'value': '!='}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'addrs'}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'raise_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '75']}, {'id': '69', 'type': 'attribute', 'children': ['70', '74']}; {'id': '70', 'type': 'concatenated_string', 'children': ['71', '72', '73']}, {'id': '71', 'type': 'string', 'children': [], 'value': '"The number of graph nodes and agents in the "'}; {'id': '72', 'type': 'string', 'children': [], 'value': '"environment (excluding the manager agent) must "'}, {'id': '73', 'type': 'string', 'children': [], 'value': '"match. Now got {} nodes and {} agents."'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '80']}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'addrs'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'addrs'}, {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'sort_addrs'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'addrs'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': '_addrs2nodes'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'addrs'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'conn_map'}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': '_edges2conns'}; {'id': '102', 'type': 'argument_list', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'edge_data'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'env'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'create_connections'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'conn_map'} | def connections_from_graph(env, G, edge_data=False):
if not issubclass(G.__class__, (Graph, DiGraph)):
raise TypeError("Graph structure must be derived from Networkx's "
"Graph or DiGraph.")
if not hasattr(env, 'get_agents'):
raise TypeError("Parameter 'env' must have get_agents.")
addrs = env.get_agents(addr=True)
if len(addrs) != len(G):
raise ValueError("The number of graph nodes and agents in the "
"environment (excluding the manager agent) must "
"match. Now got {} nodes and {} agents."
.format(len(G), len(addrs)))
addrs = sort_addrs(addrs)
_addrs2nodes(addrs, G)
conn_map = _edges2conns(G, edge_data)
env.create_connections(conn_map) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'graph_from_connections'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'env'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'directed'}, {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '20', '31', '83']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '12', 'type': 'conditional_expression', 'children': ['13', '16', '17'], 'value': 'if'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'DiGraph'}, {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'directed'}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'Graph'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'conn_list'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'env'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'get_connections'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '30', 'type': 'True', 'children': []}, {'id': '31', 'type': 'for_statement', 'children': ['32', '35', '36']}; {'id': '32', 'type': 'pattern_list', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'agent'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'conns'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'conn_list'}; {'id': '36', 'type': 'block', 'children': ['37', '44', '48', '68']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'G'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'add_node'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'agent'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'ebunch'}, {'id': '47', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '48', 'type': 'for_statement', 'children': ['49', '52', '57']}, {'id': '49', 'type': 'pattern_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'nb'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'conns'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'ebunch'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'tuple', 'children': ['65', '66', '67']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'agent'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'nb'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '75']}, {'id': '69', 'type': 'comparison_operator', 'children': ['70', '74'], 'value': '>'}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'ebunch'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'add_edges_from'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'ebunch'}, {'id': '83', 'type': 'return_statement', 'children': ['84']} | def graph_from_connections(env, directed=False):
G = DiGraph() if directed else Graph()
conn_list = env.get_connections(data=True)
for agent, conns in conn_list:
G.add_node(agent)
ebunch = []
for nb, data in conns.items():
ebunch.append((agent, nb, data))
if len(ebunch) > 0:
G.add_edges_from(ebunch)
return G |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'profile'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '200'}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '15', '149', '301']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '14'], 'value': '=='}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '14', 'type': 'string', 'children': [], 'value': "'GET'"}, {'id': '15', 'type': 'block', 'children': ['16', '132']}; {'id': '16', 'type': 'if_statement', 'children': ['17', '26', '62']}, {'id': '17', 'type': 'call', 'children': ['18', '23']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'GET'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"username"'}, {'id': '25', 'type': 'False', 'children': []}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'try_statement', 'children': ['28', '54']}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'user_profile'}; {'id': '32', 'type': 'attribute', 'children': ['33', '53']}, {'id': '33', 'type': 'call', 'children': ['34', '39']}; {'id': '34', 'type': 'attribute', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'User'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '50']}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '42', 'type': 'call', 'children': ['43', '48']}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'GET'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'string', 'children': [], 'value': '"username"'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'userprofile__public'}; {'id': '52', 'type': 'True', 'children': []}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'userprofile'}; {'id': '54', 'type': 'except_clause', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'ObjectDoesNotExist'}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'raise_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'Http404'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'string', 'children': [], 'value': '"user not found or have not public profile"'}; {'id': '62', 'type': 'else_clause', 'children': ['63']}, {'id': '63', 'type': 'block', 'children': ['64', '71', '122']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'get_user_id'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '71', 'type': 'if_statement', 'children': ['72', '86']}; {'id': '72', 'type': 'boolean_operator', 'children': ['73', '81'], 'value': 'and'}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'get_config'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77', '78']}; {'id': '76', 'type': 'string', 'children': [], 'value': "'proso_user'"}, {'id': '77', 'type': 'string', 'children': [], 'value': "'google.openid.migration'"}; {'id': '78', 'type': 'keyword_argument', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '80', 'type': 'True', 'children': []}, {'id': '81', 'type': 'not_operator', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'is_user_id_overridden'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '86', 'type': 'block', 'children': ['87', '96']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'migrated_user'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'migrate_google_openid_user'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '100']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '99'], 'value': 'is'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'migrated_user'}, {'id': '99', 'type': 'None', 'children': []}; {'id': '100', 'type': 'block', 'children': ['101', '108', '114']}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'auth'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'logout'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'migrated_user'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'backend'}, {'id': '113', 'type': 'string', 'children': [], 'value': "'social.backends.google.GoogleOAuth2'"}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'login'}, {'id': '119', 'type': 'argument_list', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'migrated_user'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'user_profile'}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'get_object_or_404'}, {'id': '127', 'type': 'argument_list', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'UserProfile'}, {'id': '129', 'type': 'keyword_argument', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '132', 'type': 'return_statement', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '135', 'type': 'argument_list', 'children': ['136', '137', '138', '141', '144']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'user_profile'}; {'id': '138', 'type': 'keyword_argument', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '141', 'type': 'keyword_argument', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '143', 'type': 'string', 'children': [], 'value': "'user_profile.html'"}; {'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'help_text'}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'profile'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '149', 'type': 'elif_clause', 'children': ['150', '155']}; {'id': '150', 'type': 'comparison_operator', 'children': ['151', '154'], 'value': '=='}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '154', 'type': 'string', 'children': [], 'value': "'POST'"}, {'id': '155', 'type': 'block', 'children': ['156', '287', '293']}; {'id': '156', 'type': 'with_statement', 'children': ['157', '164']}, {'id': '157', 'type': 'with_clause', 'children': ['158']}; {'id': '158', 'type': 'with_item', 'children': ['159']}, {'id': '159', 'type': 'call', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'transaction'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'atomic'}, {'id': '163', 'type': 'argument_list', 'children': []}; {'id': '164', 'type': 'block', 'children': ['165', '179', '186', '196', '206', '222', '238', '267', '281']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'to_save'}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'json_body'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'call', 'children': ['172', '177']}; {'id': '172', 'type': 'attribute', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'string', 'children': [], 'value': '"utf-8"'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'assignment', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'get_user_id'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'assignment', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'user_profile'}, {'id': '189', 'type': 'call', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'get_object_or_404'}, {'id': '191', 'type': 'argument_list', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'UserProfile'}, {'id': '193', 'type': 'keyword_argument', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'assignment', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'to_save'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '203', 'type': 'argument_list', 'children': ['204', '205']}; {'id': '204', 'type': 'string', 'children': [], 'value': "'user'"}, {'id': '205', 'type': 'None', 'children': []}; {'id': '206', 'type': 'if_statement', 'children': ['207', '210']}, {'id': '207', 'type': 'comparison_operator', 'children': ['208', '209'], 'value': 'in'}; {'id': '208', 'type': 'string', 'children': [], 'value': "'send_emails'"}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'to_save'}; {'id': '210', 'type': 'block', 'children': ['211']}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'user_profile'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'send_emails'}; {'id': '216', 'type': 'call', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'bool'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'subscript', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'to_save'}, {'id': '221', 'type': 'string', 'children': [], 'value': "'send_emails'"}; {'id': '222', 'type': 'if_statement', 'children': ['223', '226']}, {'id': '223', 'type': 'comparison_operator', 'children': ['224', '225'], 'value': 'in'}; {'id': '224', 'type': 'string', 'children': [], 'value': "'public'"}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'to_save'}; {'id': '226', 'type': 'block', 'children': ['227']}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'assignment', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'user_profile'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'public'}; {'id': '232', 'type': 'call', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'bool'}; {'id': '234', 'type': 'argument_list', 'children': ['235']}, {'id': '235', 'type': 'subscript', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'to_save'}, {'id': '237', 'type': 'string', 'children': [], 'value': "'public'"}; {'id': '238', 'type': 'if_statement', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '240', 'type': 'block', 'children': ['241', '252']}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'assignment', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '244', 'type': 'call', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': '_save_user'}; {'id': '246', 'type': 'argument_list', 'children': ['247', '248', '249']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '249', 'type': 'keyword_argument', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'new'}, {'id': '251', 'type': 'False', 'children': []}; {'id': '252', 'type': 'if_statement', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '254', 'type': 'block', 'children': ['255']}, {'id': '255', 'type': 'return_statement', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '258', 'type': 'argument_list', 'children': ['259', '260', '261', '264']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '261', 'type': 'keyword_argument', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '263', 'type': 'string', 'children': [], 'value': "'user_json.html'"}; {'id': '264', 'type': 'keyword_argument', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '266', 'type': 'integer', 'children': [], 'value': '400'}, {'id': '267', 'type': 'if_statement', 'children': ['268', '271']}; {'id': '268', 'type': 'comparison_operator', 'children': ['269', '270'], 'value': 'in'}, {'id': '269', 'type': 'string', 'children': [], 'value': "'properties'"}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'to_save'}, {'id': '271', 'type': 'block', 'children': ['272']}; {'id': '272', 'type': 'expression_statement', 'children': ['273']}, {'id': '273', 'type': 'call', 'children': ['274', '277']}; {'id': '274', 'type': 'attribute', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'user_profile'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'save_properties'}, {'id': '277', 'type': 'argument_list', 'children': ['278']}; {'id': '278', 'type': 'subscript', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'to_save'}; {'id': '280', 'type': 'string', 'children': [], 'value': "'properties'"}, {'id': '281', 'type': 'expression_statement', 'children': ['282']}; {'id': '282', 'type': 'call', 'children': ['283', '286']}, {'id': '283', 'type': 'attribute', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'user_profile'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '286', 'type': 'argument_list', 'children': []}, {'id': '287', 'type': 'expression_statement', 'children': ['288']}; {'id': '288', 'type': 'assignment', 'children': ['289', '292']}, {'id': '289', 'type': 'attribute', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '292', 'type': 'string', 'children': [], 'value': '"GET"'}, {'id': '293', 'type': 'return_statement', 'children': ['294']}; {'id': '294', 'type': 'call', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'profile'}; {'id': '296', 'type': 'argument_list', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '298', 'type': 'keyword_argument', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '300', 'type': 'integer', 'children': [], 'value': '202'}, {'id': '301', 'type': 'else_clause', 'children': ['302']}; {'id': '302', 'type': 'block', 'children': ['303']}, {'id': '303', 'type': 'return_statement', 'children': ['304']}; {'id': '304', 'type': 'call', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'}; {'id': '306', 'type': 'argument_list', 'children': ['307']}, {'id': '307', 'type': 'call', 'children': ['308', '311']}; {'id': '308', 'type': 'attribute', 'children': ['309', '310']}, {'id': '309', 'type': 'string', 'children': [], 'value': '"method %s is not allowed"'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '311', 'type': 'argument_list', 'children': ['312']}; {'id': '312', 'type': 'attribute', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'request'} | def profile(request, status=200):
if request.method == 'GET':
if request.GET.get("username", False):
try:
user_profile = User.objects.get(username=request.GET.get("username"),
userprofile__public=True).userprofile
except ObjectDoesNotExist:
raise Http404("user not found or have not public profile")
else:
user_id = get_user_id(request)
if get_config('proso_user', 'google.openid.migration', default=True) and not is_user_id_overridden(request):
migrated_user = migrate_google_openid_user(request.user)
if migrated_user is not None:
auth.logout(request)
migrated_user.backend = 'social.backends.google.GoogleOAuth2'
auth.login(request, migrated_user)
user_profile = get_object_or_404(UserProfile, user_id=user_id)
return render_json(
request, user_profile, status=status,
template='user_profile.html', help_text=profile.__doc__)
elif request.method == 'POST':
with transaction.atomic():
to_save = json_body(request.body.decode("utf-8"))
user_id = get_user_id(request)
user_profile = get_object_or_404(UserProfile, user_id=user_id)
user = to_save.get('user', None)
if 'send_emails' in to_save:
user_profile.send_emails = bool(to_save['send_emails'])
if 'public' in to_save:
user_profile.public = bool(to_save['public'])
if user:
error = _save_user(request, user, new=False)
if error:
return render_json(request, error, template='user_json.html', status=400)
if 'properties' in to_save:
user_profile.save_properties(to_save['properties'])
user_profile.save()
request.method = "GET"
return profile(request, status=202)
else:
return HttpResponseBadRequest("method %s is not allowed".format(request.method)) |
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{'id': '16', 'type': 'if_statement', 'children': ['17', '20']}, {'id': '17', 'type': 'boolean_operator', 'children': ['18', '19'], 'value': 'and'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'inputfile'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'raise_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'MQ2Exception'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'string', 'children': [], 'value': "'You should specify either a folder or a file'"}; {'id': '26', 'type': 'if_statement', 'children': ['27', '28', '115']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'folder'}; {'id': '28', 'type': 'block', 'children': ['29', '42']}, {'id': '29', 'type': 'if_statement', 'children': ['30', '39']}; {'id': '30', 'type': 'not_operator', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'folder'}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'return_statement', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '42', 'type': 'for_statement', 'children': ['43', '47', '53']}, {'id': '43', 'type': 'pattern_list', 'children': ['44', '45', '46']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'dirs'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'walk'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'folder'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'for_statement', 'children': ['55', '56', '57']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '57', 'type': 'block', 'children': ['58', '70']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '61', 'type': 'call', 'children': ['62', '67']}; {'id': '62', 'type': 'attribute', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'root'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '70', 'type': 'for_statement', 'children': ['71', '72', '73']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'SUPPORTED_FILES'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'if_statement', 'children': ['75', '81']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'endswith'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'ext'}, {'id': '81', 'type': 'block', 'children': ['82', '91']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'wbook'}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'xlrd'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'open_workbook'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '91', 'type': 'for_statement', 'children': ['92', '93', '98']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'sheet'}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'wbook'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'sheets'}, {'id': '97', 'type': 'argument_list', 'children': []}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'if_statement', 'children': ['100', '105']}; {'id': '100', 'type': 'comparison_operator', 'children': ['101', '104'], 'value': 'not'}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'sheet'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'sessions'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'sheet'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '115', 'type': 'elif_clause', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'inputfile'}, {'id': '117', 'type': 'block', 'children': ['118', '130']}; {'id': '118', 'type': 'if_statement', 'children': ['119', '127']}, {'id': '119', 'type': 'call', 'children': ['120', '125']}; {'id': '120', 'type': 'attribute', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'inputfile'}, {'id': '127', 'type': 'block', 'children': ['128']}; {'id': '128', 'type': 'return_statement', 'children': ['129']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '130', 'type': 'for_statement', 'children': ['131', '132', '133']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'SUPPORTED_FILES'}, {'id': '133', 'type': 'block', 'children': ['134']}; {'id': '134', 'type': 'if_statement', 'children': ['135', '141']}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'inputfile'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'endswith'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'ext'}, {'id': '141', 'type': 'block', 'children': ['142', '151']}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'wbook'}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'xlrd'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'open_workbook'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'inputfile'}, {'id': '151', 'type': 'for_statement', 'children': ['152', '153', '158']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'sheet'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'wbook'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'sheets'}, {'id': '157', 'type': 'argument_list', 'children': []}; {'id': '158', 'type': 'block', 'children': ['159']}, {'id': '159', 'type': 'if_statement', 'children': ['160', '165']}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '164'], 'value': 'not'}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'sheet'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'sessions'}, {'id': '165', 'type': 'block', 'children': ['166']}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'sheet'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '175', 'type': 'return_statement', 'children': ['176']} | def get_session_identifiers(cls, folder=None, inputfile=None):
sessions = []
if inputfile and folder:
raise MQ2Exception(
'You should specify either a folder or a file')
if folder:
if not os.path.isdir(folder):
return sessions
for root, dirs, files in os.walk(folder):
for filename in files:
filename = os.path.join(root, filename)
for ext in SUPPORTED_FILES:
if filename.endswith(ext):
wbook = xlrd.open_workbook(filename)
for sheet in wbook.sheets():
if sheet.name not in sessions:
sessions.append(sheet.name)
elif inputfile:
if os.path.isdir(inputfile):
return sessions
for ext in SUPPORTED_FILES:
if inputfile.endswith(ext):
wbook = xlrd.open_workbook(inputfile)
for sheet in wbook.sheets():
if sheet.name not in sessions:
sessions.append(sheet.name)
return sessions |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'template2regex'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'ranges'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '45', '54', '58', '62', '79', '83', '87', '92', '96', '100', '104', '310', '322', '334', '344']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '30']}; {'id': '10', 'type': 'boolean_operator', 'children': ['11', '15'], 'value': 'and'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '15', 'type': 'comparison_operator', 'children': ['16', '18', '24'], 'value': '<'}; {'id': '16', 'type': 'unary_operator', 'children': ['17'], 'value': '-'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'string', 'children': [], 'value': "'|'"}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '29'], 'value': '-'}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'raise_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'InvalidTemplateError'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'binary_operator', 'children': ['36', '37'], 'value': '%'}; {'id': '36', 'type': 'string', 'children': [], 'value': '"\'|\' may only appear at the end, found at position %d in %s"'}, {'id': '37', 'type': 'tuple', 'children': ['38', '44']}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'string', 'children': [], 'value': "'|'"}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '45', 'type': 'if_statement', 'children': ['46', '49']}; {'id': '46', 'type': 'comparison_operator', 'children': ['47', '48'], 'value': 'is'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ranges'}; {'id': '48', 'type': 'None', 'children': []}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ranges'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_RANGES'}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'anchor'}, {'id': '57', 'type': 'True', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'S_PATH'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '74']}, {'id': '63', 'type': 'boolean_operator', 'children': ['64', '68'], 'value': 'and'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '73'], 'value': '=='}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '71', 'type': 'unary_operator', 'children': ['72'], 'value': '-'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '73', 'type': 'string', 'children': [], 'value': "'|'"}; {'id': '74', 'type': 'block', 'children': ['75']}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'anchor'}; {'id': '78', 'type': 'False', 'children': []}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '82', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'bracketdepth'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '90', 'type': 'list', 'children': ['91'], 'value': "['^']"}, {'id': '91', 'type': 'string', 'children': [], 'value': "'^'"}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '95', 'type': 'string', 'children': [], 'value': '""'}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'assignment', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '99', 'type': 'string', 'children': [], 'value': '"[^/]+"'}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'rangename'}, {'id': '103', 'type': 'None', 'children': []}; {'id': '104', 'type': 'for_statement', 'children': ['105', '106', '112']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'template_splitter'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '112', 'type': 'block', 'children': ['113']}, {'id': '113', 'type': 'if_statement', 'children': ['114', '117', '227']}; {'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': '=='}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'S_PATH'}, {'id': '117', 'type': 'block', 'children': ['118']}; {'id': '118', 'type': 'if_statement', 'children': ['119', '125', '138', '154', '182', '195', '207', '213']}, {'id': '119', 'type': 'comparison_operator', 'children': ['120', '124'], 'value': '>'}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '124', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'escape'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '138', 'type': 'elif_clause', 'children': ['139', '142']}, {'id': '139', 'type': 'comparison_operator', 'children': ['140', '141'], 'value': '=='}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '141', 'type': 'string', 'children': [], 'value': "'['"}; {'id': '142', 'type': 'block', 'children': ['143', '150']}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': '"("'}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'augmented_assignment', 'children': ['152', '153'], 'value': '+='}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'bracketdepth'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '154', 'type': 'elif_clause', 'children': ['155', '158']}, {'id': '155', 'type': 'comparison_operator', 'children': ['156', '157'], 'value': '=='}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '157', 'type': 'string', 'children': [], 'value': "']'"}; {'id': '158', 'type': 'block', 'children': ['159', '163', '175']}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'augmented_assignment', 'children': ['161', '162'], 'value': '-='}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'bracketdepth'}; {'id': '162', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '163', 'type': 'if_statement', 'children': ['164', '167']}; {'id': '164', 'type': 'comparison_operator', 'children': ['165', '166'], 'value': '<'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'bracketdepth'}; {'id': '166', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '167', 'type': 'block', 'children': ['168']}; {'id': '168', 'type': 'raise_statement', 'children': ['169']}, {'id': '169', 'type': 'call', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'InvalidTemplateError'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'binary_operator', 'children': ['173', '174'], 'value': '%'}, {'id': '173', 'type': 'string', 'children': [], 'value': '"Mismatched brackets in %s"'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'call', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'string', 'children': [], 'value': '")?"'}; {'id': '182', 'type': 'elif_clause', 'children': ['183', '186']}, {'id': '183', 'type': 'comparison_operator', 'children': ['184', '185'], 'value': '=='}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '185', 'type': 'string', 'children': [], 'value': "'{'"}; {'id': '186', 'type': 'block', 'children': ['187', '191']}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '190', 'type': 'string', 'children': [], 'value': '""'}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'S_TEMPLATE'}, {'id': '195', 'type': 'elif_clause', 'children': ['196', '199']}; {'id': '196', 'type': 'comparison_operator', 'children': ['197', '198'], 'value': '=='}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '198', 'type': 'string', 'children': [], 'value': "'}'"}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'raise_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'InvalidTemplateError'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'binary_operator', 'children': ['205', '206'], 'value': '%'}, {'id': '205', 'type': 'string', 'children': [], 'value': '"Mismatched braces in %s"'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '207', 'type': 'elif_clause', 'children': ['208', '211']}; {'id': '208', 'type': 'comparison_operator', 'children': ['209', '210'], 'value': '=='}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '210', 'type': 'string', 'children': [], 'value': "'|'"}, {'id': '211', 'type': 'block', 'children': ['212']}; {'id': '212', 'type': 'pass_statement', 'children': []}, {'id': '213', 'type': 'else_clause', 'children': ['214']}; {'id': '214', 'type': 'block', 'children': ['215']}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'call', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'escape'}, {'id': '225', 'type': 'argument_list', 'children': ['226']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '227', 'type': 'else_clause', 'children': ['228']}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'if_statement', 'children': ['230', '233', '282']}; {'id': '230', 'type': 'comparison_operator', 'children': ['231', '232'], 'value': '=='}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '232', 'type': 'string', 'children': [], 'value': "'}'"}, {'id': '233', 'type': 'block', 'children': ['234', '267', '274', '278']}; {'id': '234', 'type': 'if_statement', 'children': ['235', '240', '254']}, {'id': '235', 'type': 'boolean_operator', 'children': ['236', '237'], 'value': 'and'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'rangename'}, {'id': '237', 'type': 'comparison_operator', 'children': ['238', '239'], 'value': 'in'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'rangename'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'ranges'}; {'id': '240', 'type': 'block', 'children': ['241']}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'call', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'binary_operator', 'children': ['248', '249'], 'value': '%'}; {'id': '248', 'type': 'string', 'children': [], 'value': '"(?P<%s>%s)"'}, {'id': '249', 'type': 'tuple', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '251', 'type': 'subscript', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'ranges'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'rangename'}; {'id': '254', 'type': 'else_clause', 'children': ['255']}, {'id': '255', 'type': 'block', 'children': ['256']}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'call', 'children': ['258', '261']}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '261', 'type': 'argument_list', 'children': ['262']}; {'id': '262', 'type': 'binary_operator', 'children': ['263', '264'], 'value': '%'}, {'id': '263', 'type': 'string', 'children': [], 'value': '"(?P<%s>%s)"'}; {'id': '264', 'type': 'tuple', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'call', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '272', 'type': 'argument_list', 'children': ['273']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '274', 'type': 'expression_statement', 'children': ['275']}, {'id': '275', 'type': 'assignment', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'S_PATH'}; {'id': '278', 'type': 'expression_statement', 'children': ['279']}, {'id': '279', 'type': 'assignment', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'rangename'}, {'id': '281', 'type': 'None', 'children': []}; {'id': '282', 'type': 'else_clause', 'children': ['283']}, {'id': '283', 'type': 'block', 'children': ['284', '288']}; {'id': '284', 'type': 'expression_statement', 'children': ['285']}, {'id': '285', 'type': 'assignment', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '288', 'type': 'if_statement', 'children': ['289', '298']}, {'id': '289', 'type': 'comparison_operator', 'children': ['290', '296'], 'value': '>'}; {'id': '290', 'type': 'call', 'children': ['291', '294']}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '294', 'type': 'argument_list', 'children': ['295']}, {'id': '295', 'type': 'string', 'children': [], 'value': '":"'}; {'id': '296', 'type': 'unary_operator', 'children': ['297'], 'value': '-'}, {'id': '297', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '298', 'type': 'block', 'children': ['299']}, {'id': '299', 'type': 'expression_statement', 'children': ['300']}; {'id': '300', 'type': 'assignment', 'children': ['301', '304']}, {'id': '301', 'type': 'pattern_list', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'rangename'}; {'id': '304', 'type': 'call', 'children': ['305', '308']}, {'id': '305', 'type': 'attribute', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '308', 'type': 'argument_list', 'children': ['309']}, {'id': '309', 'type': 'string', 'children': [], 'value': '":"'}; {'id': '310', 'type': 'if_statement', 'children': ['311', '314']}, {'id': '311', 'type': 'comparison_operator', 'children': ['312', '313'], 'value': '!='}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'bracketdepth'}, {'id': '313', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '314', 'type': 'block', 'children': ['315']}, {'id': '315', 'type': 'raise_statement', 'children': ['316']}; {'id': '316', 'type': 'call', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'InvalidTemplateError'}; {'id': '318', 'type': 'argument_list', 'children': ['319']}, {'id': '319', 'type': 'binary_operator', 'children': ['320', '321'], 'value': '%'}; {'id': '320', 'type': 'string', 'children': [], 'value': '"Mismatched brackets in %s"'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '322', 'type': 'if_statement', 'children': ['323', '326']}, {'id': '323', 'type': 'comparison_operator', 'children': ['324', '325'], 'value': '=='}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'S_TEMPLATE'}; {'id': '326', 'type': 'block', 'children': ['327']}, {'id': '327', 'type': 'raise_statement', 'children': ['328']}; {'id': '328', 'type': 'call', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'InvalidTemplateError'}; {'id': '330', 'type': 'argument_list', 'children': ['331']}, {'id': '331', 'type': 'binary_operator', 'children': ['332', '333'], 'value': '%'}; {'id': '332', 'type': 'string', 'children': [], 'value': '"Mismatched braces in %s"'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '334', 'type': 'if_statement', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'anchor'}; {'id': '336', 'type': 'block', 'children': ['337']}, {'id': '337', 'type': 'expression_statement', 'children': ['338']}; {'id': '338', 'type': 'call', 'children': ['339', '342']}, {'id': '339', 'type': 'attribute', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '342', 'type': 'argument_list', 'children': ['343']}, {'id': '343', 'type': 'string', 'children': [], 'value': "'$'"}; {'id': '344', 'type': 'return_statement', 'children': ['345']}, {'id': '345', 'type': 'expression_list', 'children': ['346', '352']}; {'id': '346', 'type': 'call', 'children': ['347', '350']}, {'id': '347', 'type': 'attribute', 'children': ['348', '349']}; {'id': '348', 'type': 'string', 'children': [], 'value': '""'}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '350', 'type': 'argument_list', 'children': ['351']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'result'} | def template2regex(template, ranges=None):
if len(template) and -1 < template.find('|') < len(template) - 1:
raise InvalidTemplateError("'|' may only appear at the end, found at position %d in %s" % (template.find('|'), template))
if ranges is None:
ranges = DEFAULT_RANGES
anchor = True
state = S_PATH
if len(template) and template[-1] == '|':
anchor = False
params = []
bracketdepth = 0
result = ['^']
name = ""
pattern = "[^/]+"
rangename = None
for c in template_splitter.split(template):
if state == S_PATH:
if len(c) > 1:
result.append(re.escape(c))
elif c == '[':
result.append("(")
bracketdepth += 1
elif c == ']':
bracketdepth -= 1
if bracketdepth < 0:
raise InvalidTemplateError("Mismatched brackets in %s" % template)
result.append(")?")
elif c == '{':
name = ""
state = S_TEMPLATE
elif c == '}':
raise InvalidTemplateError("Mismatched braces in %s" % template)
elif c == '|':
pass
else:
result.append(re.escape(c))
else:
if c == '}':
if rangename and rangename in ranges:
result.append("(?P<%s>%s)" % (name, ranges[rangename]))
else:
result.append("(?P<%s>%s)" % (name, pattern))
params.append(name)
state = S_PATH
rangename = None
else:
name = c
if name.find(":") > -1:
name, rangename = name.split(":")
if bracketdepth != 0:
raise InvalidTemplateError("Mismatched brackets in %s" % template)
if state == S_TEMPLATE:
raise InvalidTemplateError("Mismatched braces in %s" % template)
if anchor:
result.append('$')
return "".join(result), params |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'path'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '16', '93', '132']}; {'id': '10', 'type': 'comparison_operator', 'children': ['11', '15'], 'value': 'in'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'if_statement', 'children': ['18', '21', '79']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'in'}, {'id': '19', 'type': 'string', 'children': [], 'value': "':'"}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '21', 'type': 'block', 'children': ['22', '34', '42', '52', '62', '68']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'pattern_list', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'rest'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "':'"}, {'id': '33', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '37', 'type': 'subscript', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'named_routes'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'prefix_params'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'route'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': '_pop_params'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'prefix_path'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'route'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'prefix_params'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'next_mapper'}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'resource'}; {'id': '68', 'type': 'return_statement', 'children': ['69']}, {'id': '69', 'type': 'binary_operator', 'children': ['70', '71'], 'value': '+'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'prefix_path'}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'next_mapper'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77', '78']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'rest'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '79', 'type': 'else_clause', 'children': ['80']}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'return_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '90']}, {'id': '83', 'type': 'attribute', 'children': ['84', '89']}; {'id': '84', 'type': 'subscript', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'named_routes'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '93', 'type': 'elif_clause', 'children': ['94', '99']}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '96', 'type': 'argument_list', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'Route'}, {'id': '99', 'type': 'block', 'children': ['100', '119']}; {'id': '100', 'type': 'for_statement', 'children': ['101', '102', '105']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'route'}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'routes'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'if_statement', 'children': ['107', '110']}, {'id': '107', 'type': 'comparison_operator', 'children': ['108', '109'], 'value': 'is'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'return_statement', 'children': ['112']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '119', 'type': 'raise_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'InvalidArgumentError'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'binary_operator', 'children': ['124', '125'], 'value': '%'}; {'id': '124', 'type': 'string', 'children': [], 'value': '"Route \'%s\' not found in this %s object."'}, {'id': '125', 'type': 'tuple', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '127', 'type': 'attribute', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': '__name__'}; {'id': '132', 'type': 'else_clause', 'children': ['133']}, {'id': '133', 'type': 'block', 'children': ['134', '141', '160']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'target_id'}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'target'}, {'id': '141', 'type': 'if_statement', 'children': ['142', '147']}; {'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': 'in'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'target_id'}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': '_lookup'}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'return_statement', 'children': ['149']}, {'id': '149', 'type': 'call', 'children': ['150', '157']}; {'id': '150', 'type': 'attribute', 'children': ['151', '156']}, {'id': '151', 'type': 'subscript', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': '_lookup'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'target_id'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '160', 'type': 'raise_statement', 'children': ['161']}, {'id': '161', 'type': 'call', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'InvalidArgumentError'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'binary_operator', 'children': ['165', '166'], 'value': '%'}, {'id': '165', 'type': 'string', 'children': [], 'value': '"No Route found for target \'%s\' in this %s object."'}; {'id': '166', 'type': 'tuple', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'target'}; {'id': '168', 'type': 'attribute', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': '__class__'} | def path(self, target, args, kw):
if type(target) in string_types:
if ':' in target:
prefix, rest = target.split(':', 1)
route = self.named_routes[prefix]
prefix_params = route._pop_params(args, kw)
prefix_path = route.path([], prefix_params)
next_mapper = route.resource
return prefix_path + next_mapper.path(rest, args, kw)
else:
return self.named_routes[target].path(args, kw)
elif isinstance(target, Route):
for route in self.routes:
if route is target:
return route.path(args, kw)
raise InvalidArgumentError("Route '%s' not found in this %s object." % (target, self.__class__.__name__))
else:
target_id = id(target)
if target_id in self._lookup:
return self._lookup[target_id].path(args, kw)
raise InvalidArgumentError("No Route found for target '%s' in this %s object." % (target, self.__class__.__name__)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_children_graph'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '26', '133']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'function_definition', 'children': ['27', '28', '30']}, {'id': '27', 'type': 'function_name', 'children': [], 'value': '_children'}; {'id': '28', 'type': 'parameters', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '30', 'type': 'block', 'children': ['31', '92']}, {'id': '31', 'type': 'if_statement', 'children': ['32', '35', '54']}; {'id': '32', 'type': 'comparison_operator', 'children': ['33', '34'], 'value': 'is'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '34', 'type': 'None', 'children': []}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '39', 'type': 'call', 'children': ['40', '52']}; {'id': '40', 'type': 'attribute', 'children': ['41', '51']}, {'id': '41', 'type': 'call', 'children': ['42', '47']}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'Item'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'active'}; {'id': '50', 'type': 'True', 'children': []}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'prefetch_related'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'string', 'children': [], 'value': "'children'"}; {'id': '54', 'type': 'else_clause', 'children': ['55']}, {'id': '55', 'type': 'block', 'children': ['56', '71']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '59', 'type': 'list_comprehension', 'children': ['60', '61', '68']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'ii'}, {'id': '61', 'type': 'for_in_clause', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'iis'}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '67', 'type': 'argument_list', 'children': []}; {'id': '68', 'type': 'for_in_clause', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'ii'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'iis'}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '74', 'type': 'call', 'children': ['75', '90']}, {'id': '75', 'type': 'attribute', 'children': ['76', '89']}; {'id': '76', 'type': 'call', 'children': ['77', '82']}, {'id': '77', 'type': 'attribute', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'Item'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '86']}, {'id': '83', 'type': 'keyword_argument', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'id__in'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'active'}; {'id': '88', 'type': 'True', 'children': []}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'prefetch_related'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'string', 'children': [], 'value': "'children'"}; {'id': '92', 'type': 'return_statement', 'children': ['93']}, {'id': '93', 'type': 'dictionary_comprehension', 'children': ['94', '124', '127']}; {'id': '94', 'type': 'pair', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'list_comprehension', 'children': ['102', '105', '114']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': '_item'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '105', 'type': 'for_in_clause', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': '_item'}, {'id': '107', 'type': 'call', 'children': ['108', '113']}; {'id': '108', 'type': 'attribute', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '113', 'type': 'argument_list', 'children': []}; {'id': '114', 'type': 'if_clause', 'children': ['115']}, {'id': '115', 'type': 'boolean_operator', 'children': ['116', '119'], 'value': 'and'}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': '_item'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'active'}, {'id': '119', 'type': 'comparison_operator', 'children': ['120', '123'], 'value': 'not'}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': '_item'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '124', 'type': 'for_in_clause', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '127', 'type': 'if_clause', 'children': ['128']}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '132'], 'value': 'not'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '133', 'type': 'if_statement', 'children': ['134', '137', '149']}; {'id': '134', 'type': 'comparison_operator', 'children': ['135', '136'], 'value': 'is'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '136', 'type': 'None', 'children': []}, {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'return_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': '_reachable_graph'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145', '146']}; {'id': '144', 'type': 'None', 'children': []}, {'id': '145', 'type': 'identifier', 'children': [], 'value': '_children'}; {'id': '146', 'type': 'keyword_argument', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '149', 'type': 'else_clause', 'children': ['150']}; {'id': '150', 'type': 'block', 'children': ['151', '164']}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'assignment', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'graph'}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'get_children_graph'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '160', '161']}, {'id': '159', 'type': 'None', 'children': []}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '161', 'type': 'keyword_argument', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '164', 'type': 'return_statement', 'children': ['165']}, {'id': '165', 'type': 'call', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': '_subset_graph'}, {'id': '169', 'type': 'argument_list', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '176'], 'value': '-'}; {'id': '172', 'type': 'call', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '174', 'type': 'argument_list', 'children': ['175']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '176', 'type': 'call', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '178', 'type': 'argument_list', 'children': ['179']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'} | def get_children_graph(self, item_ids=None, language=None, forbidden_item_ids=None):
if forbidden_item_ids is None:
forbidden_item_ids = set()
def _children(item_ids):
if item_ids is None:
items = Item.objects.filter(active=True).prefetch_related('children')
else:
item_ids = [ii for iis in item_ids.values() for ii in iis]
items = Item.objects.filter(id__in=item_ids, active=True).prefetch_related('children')
return {
item.id: sorted([
_item.id for _item in item.children.all()
if _item.active and _item.id not in forbidden_item_ids
])
for item in items if item.id not in forbidden_item_ids
}
if item_ids is None:
return self._reachable_graph(None, _children, language=language)
else:
graph = self.get_children_graph(None, language, forbidden_item_ids=forbidden_item_ids)
return self._subset_graph(graph, set(item_ids) - set(forbidden_item_ids)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_parents_graph'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '101', '112']}; {'id': '10', 'type': 'function_definition', 'children': ['11', '12', '14']}, {'id': '11', 'type': 'function_name', 'children': [], 'value': '_parents'}; {'id': '12', 'type': 'parameters', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '14', 'type': 'block', 'children': ['15', '76']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '19', '38']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '23', 'type': 'call', 'children': ['24', '36']}; {'id': '24', 'type': 'attribute', 'children': ['25', '35']}, {'id': '25', 'type': 'call', 'children': ['26', '31']}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'Item'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'active'}; {'id': '34', 'type': 'True', 'children': []}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'prefetch_related'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'string', 'children': [], 'value': "'parents'"}; {'id': '38', 'type': 'else_clause', 'children': ['39']}, {'id': '39', 'type': 'block', 'children': ['40', '55']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '43', 'type': 'list_comprehension', 'children': ['44', '45', '52']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'ii'}, {'id': '45', 'type': 'for_in_clause', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'iis'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'for_in_clause', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'ii'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'iis'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '58', 'type': 'call', 'children': ['59', '74']}, {'id': '59', 'type': 'attribute', 'children': ['60', '73']}; {'id': '60', 'type': 'call', 'children': ['61', '66']}, {'id': '61', 'type': 'attribute', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'Item'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '70']}, {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'id__in'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'active'}; {'id': '72', 'type': 'True', 'children': []}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'prefetch_related'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'string', 'children': [], 'value': "'parents'"}; {'id': '76', 'type': 'return_statement', 'children': ['77']}, {'id': '77', 'type': 'dictionary_comprehension', 'children': ['78', '98']}; {'id': '78', 'type': 'pair', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'list_comprehension', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': '_item'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '89', 'type': 'for_in_clause', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': '_item'}, {'id': '91', 'type': 'call', 'children': ['92', '97']}; {'id': '92', 'type': 'attribute', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'parents'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '97', 'type': 'argument_list', 'children': []}; {'id': '98', 'type': 'for_in_clause', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '101', 'type': 'return_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': '_reachable_graph'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '108', '109']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': '_parents'}, {'id': '109', 'type': 'keyword_argument', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '112', 'type': 'if_statement', 'children': ['113', '116', '128']}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '115'], 'value': 'is'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '115', 'type': 'None', 'children': []}; {'id': '116', 'type': 'block', 'children': ['117']}, {'id': '117', 'type': 'return_statement', 'children': ['118']}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': '_reachable_graph'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124', '125']}, {'id': '123', 'type': 'None', 'children': []}; {'id': '124', 'type': 'identifier', 'children': [], 'value': '_parents'}, {'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '128', 'type': 'else_clause', 'children': ['129']}, {'id': '129', 'type': 'block', 'children': ['130', '140']}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'get_parents_graph'}, {'id': '137', 'type': 'argument_list', 'children': ['138', '139']}; {'id': '138', 'type': 'None', 'children': []}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '140', 'type': 'return_statement', 'children': ['141']}, {'id': '141', 'type': 'call', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': '_subset_graph'}, {'id': '145', 'type': 'argument_list', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'item_ids'} | def get_parents_graph(self, item_ids, language=None):
def _parents(item_ids):
if item_ids is None:
items = Item.objects.filter(active=True).prefetch_related('parents')
else:
item_ids = [ii for iis in item_ids.values() for ii in iis]
items = Item.objects.filter(id__in=item_ids, active=True).prefetch_related('parents')
return {item.id: sorted([_item.id for _item in item.parents.all()]) for item in items}
return self._reachable_graph(item_ids, _parents, language=language)
if item_ids is None:
return self._reachable_graph(None, _parents, language=language)
else:
graph = self.get_parents_graph(None, language)
return self._subset_graph(graph, item_ids) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_graph'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '114']}; {'id': '10', 'type': 'function_definition', 'children': ['11', '12', '14']}, {'id': '11', 'type': 'function_name', 'children': [], 'value': '_related'}; {'id': '12', 'type': 'parameters', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '14', 'type': 'block', 'children': ['15', '78']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '19', '39']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '23', 'type': 'call', 'children': ['24', '36']}; {'id': '24', 'type': 'attribute', 'children': ['25', '35']}, {'id': '25', 'type': 'call', 'children': ['26', '31']}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'Item'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'active'}; {'id': '34', 'type': 'True', 'children': []}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'prefetch_related'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}, {'id': '37', 'type': 'string', 'children': [], 'value': "'parents'"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'children'"}, {'id': '39', 'type': 'else_clause', 'children': ['40']}; {'id': '40', 'type': 'block', 'children': ['41', '56']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '44', 'type': 'list_comprehension', 'children': ['45', '46', '53']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ii'}; {'id': '46', 'type': 'for_in_clause', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'iis'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'for_in_clause', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ii'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'iis'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '59', 'type': 'call', 'children': ['60', '75']}; {'id': '60', 'type': 'attribute', 'children': ['61', '74']}, {'id': '61', 'type': 'call', 'children': ['62', '67']}; {'id': '62', 'type': 'attribute', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Item'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '71']}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'id__in'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'active'}, {'id': '73', 'type': 'True', 'children': []}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'prefetch_related'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'string', 'children': [], 'value': "'parents'"}, {'id': '77', 'type': 'string', 'children': [], 'value': "'children'"}; {'id': '78', 'type': 'return_statement', 'children': ['79']}, {'id': '79', 'type': 'dictionary_comprehension', 'children': ['80', '111']}; {'id': '80', 'type': 'pair', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'list_comprehension', 'children': ['88', '91', '108']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': '_item'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '91', 'type': 'for_in_clause', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '93', 'type': 'list', 'children': ['94', '101'], 'value': '[item.parents.all(), item.children.all()]'}; {'id': '94', 'type': 'call', 'children': ['95', '100']}, {'id': '95', 'type': 'attribute', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'parents'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '100', 'type': 'argument_list', 'children': []}, {'id': '101', 'type': 'call', 'children': ['102', '107']}; {'id': '102', 'type': 'attribute', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '107', 'type': 'argument_list', 'children': []}; {'id': '108', 'type': 'for_in_clause', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_item'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '111', 'type': 'for_in_clause', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '114', 'type': 'if_statement', 'children': ['115', '118', '130']}, {'id': '115', 'type': 'comparison_operator', 'children': ['116', '117'], 'value': 'is'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '117', 'type': 'None', 'children': []}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'return_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': '_reachable_graph'}; {'id': '124', 'type': 'argument_list', 'children': ['125', '126', '127']}, {'id': '125', 'type': 'None', 'children': []}; {'id': '126', 'type': 'identifier', 'children': [], 'value': '_related'}, {'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '130', 'type': 'else_clause', 'children': ['131']}, {'id': '131', 'type': 'block', 'children': ['132', '142']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'get_graph'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'None', 'children': []}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '142', 'type': 'return_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': '_subset_graph'}, {'id': '147', 'type': 'argument_list', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'graph'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'item_ids'} | def get_graph(self, item_ids, language=None):
def _related(item_ids):
if item_ids is None:
items = Item.objects.filter(active=True).prefetch_related('parents', 'children')
else:
item_ids = [ii for iis in item_ids.values() for ii in iis]
items = Item.objects.filter(id__in=item_ids, active=True).prefetch_related('parents', 'children')
return {item.id: sorted([_item.id for rel in [item.parents.all(), item.children.all()] for _item in rel]) for item in items}
if item_ids is None:
return self._reachable_graph(None, _related, language=language)
else:
graph = self.get_graph(None, language)
return self._subset_graph(graph, item_ids) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'translate_item_ids'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'is_nested'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '43', '53', '72', '76', '244']}, {'id': '11', 'type': 'if_statement', 'children': ['12', '15', '23', '37']}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': 'is'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'is_nested'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'function_definition', 'children': ['17', '18', '20']}, {'id': '17', 'type': 'function_name', 'children': [], 'value': 'is_nested_fun'}; {'id': '18', 'type': 'parameters', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'True', 'children': []}, {'id': '23', 'type': 'elif_clause', 'children': ['24', '29']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'is_nested'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'bool'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'function_definition', 'children': ['31', '32', '34']}, {'id': '31', 'type': 'function_name', 'children': [], 'value': 'is_nested_fun'}; {'id': '32', 'type': 'parameters', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'return_statement', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'is_nested'}, {'id': '37', 'type': 'else_clause', 'children': ['38']}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'is_nested_fun'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'is_nested'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'all_item_type_ids'}; {'id': '46', 'type': 'call', 'children': ['47', '52']}, {'id': '47', 'type': 'attribute', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'ItemType'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'get_all_item_type_ids'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'groupped'}; {'id': '56', 'type': 'call', 'children': ['57', '62']}, {'id': '57', 'type': 'attribute', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'proso'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'group_by'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '66', 'type': 'lambda', 'children': ['67', '69']}, {'id': '67', 'type': 'lambda_parameters', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'all_item_type_ids'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '75', 'type': 'dictionary', 'children': []}; {'id': '76', 'type': 'for_statement', 'children': ['77', '80', '85']}, {'id': '77', 'type': 'pattern_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'item_type_id'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'groupped'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '84', 'type': 'argument_list', 'children': []}, {'id': '85', 'type': 'block', 'children': ['86']}; {'id': '86', 'type': 'with_statement', 'children': ['87', '98']}, {'id': '87', 'type': 'with_clause', 'children': ['88']}; {'id': '88', 'type': 'with_item', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'timeit'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'string', 'children': [], 'value': "'translating item type {}'"}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'item_type_id'}; {'id': '98', 'type': 'block', 'children': ['99', '111', '122', '136', '149', '208']}, {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'assignment', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'item_type'}; {'id': '102', 'type': 'subscript', 'children': ['103', '110']}, {'id': '103', 'type': 'call', 'children': ['104', '109']}; {'id': '104', 'type': 'attribute', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'ItemType'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'get_all_types'}, {'id': '109', 'type': 'argument_list', 'children': []}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'item_type_id'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '114', 'type': 'call', 'children': ['115', '120']}, {'id': '115', 'type': 'attribute', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'ItemType'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'get_model'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'item_type_id'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '125', 'type': 'dictionary', 'children': ['126']}; {'id': '126', 'type': 'pair', 'children': ['127', '135']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'string', 'children': [], 'value': "'{}__in'"}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'subscript', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'item_type'}; {'id': '134', 'type': 'string', 'children': [], 'value': "'foreign_key'"}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '136', 'type': 'if_statement', 'children': ['137', '140']}, {'id': '137', 'type': 'comparison_operator', 'children': ['138', '139'], 'value': 'in'}; {'id': '138', 'type': 'string', 'children': [], 'value': "'language'"}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'item_type'}; {'id': '140', 'type': 'block', 'children': ['141']}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '148']}, {'id': '143', 'type': 'subscript', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'item_type'}, {'id': '147', 'type': 'string', 'children': [], 'value': "'language'"}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '149', 'type': 'if_statement', 'children': ['150', '170', '181', '200']}; {'id': '150', 'type': 'boolean_operator', 'children': ['151', '163'], 'value': 'and'}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'list_comprehension', 'children': ['155', '160']}, {'id': '155', 'type': 'not_operator', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'is_nested_fun'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '160', 'type': 'for_in_clause', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '163', 'type': 'call', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '165', 'type': 'argument_list', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '169', 'type': 'string', 'children': [], 'value': "'prepare_related'"}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'objs'}; {'id': '174', 'type': 'call', 'children': ['175', '180']}, {'id': '175', 'type': 'attribute', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'prepare_related'}; {'id': '180', 'type': 'argument_list', 'children': []}, {'id': '181', 'type': 'elif_clause', 'children': ['182', '189']}; {'id': '182', 'type': 'call', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '184', 'type': 'argument_list', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '188', 'type': 'string', 'children': [], 'value': "'prepare'"}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'objs'}, {'id': '193', 'type': 'call', 'children': ['194', '199']}; {'id': '194', 'type': 'attribute', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'prepare'}, {'id': '199', 'type': 'argument_list', 'children': []}; {'id': '200', 'type': 'else_clause', 'children': ['201']}, {'id': '201', 'type': 'block', 'children': ['202']}; {'id': '202', 'type': 'expression_statement', 'children': ['203']}, {'id': '203', 'type': 'assignment', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'objs'}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '208', 'type': 'for_statement', 'children': ['209', '210', '217']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'objs'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'dictionary_splat', 'children': ['216']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '217', 'type': 'block', 'children': ['218', '228']}; {'id': '218', 'type': 'expression_statement', 'children': ['219']}, {'id': '219', 'type': 'assignment', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '221', 'type': 'call', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '223', 'type': 'argument_list', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '225', 'type': 'subscript', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'item_type'}, {'id': '227', 'type': 'string', 'children': [], 'value': "'foreign_key'"}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'assignment', 'children': ['230', '233']}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '233', 'type': 'call', 'children': ['234', '237']}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'to_json'}, {'id': '237', 'type': 'argument_list', 'children': ['238']}; {'id': '238', 'type': 'keyword_argument', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'nested'}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'is_nested_fun'}; {'id': '242', 'type': 'argument_list', 'children': ['243']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '244', 'type': 'return_statement', 'children': ['245']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'result'} | def translate_item_ids(self, item_ids, language, is_nested=None):
if is_nested is None:
def is_nested_fun(x):
return True
elif isinstance(is_nested, bool):
def is_nested_fun(x):
return is_nested
else:
is_nested_fun = is_nested
all_item_type_ids = ItemType.objects.get_all_item_type_ids()
groupped = proso.list.group_by(item_ids, by=lambda item_id: all_item_type_ids[item_id])
result = {}
for item_type_id, items in groupped.items():
with timeit('translating item type {}'.format(item_type_id)):
item_type = ItemType.objects.get_all_types()[item_type_id]
model = ItemType.objects.get_model(item_type_id)
kwargs = {'{}__in'.format(item_type['foreign_key']): items}
if 'language' in item_type:
kwargs[item_type['language']] = language
if any([not is_nested_fun(item_id) for item_id in items]) and hasattr(model.objects, 'prepare_related'):
objs = model.objects.prepare_related()
elif hasattr(model.objects, 'prepare'):
objs = model.objects.prepare()
else:
objs = model.objects
for obj in objs.filter(**kwargs):
item_id = getattr(obj, item_type['foreign_key'])
result[item_id] = obj.to_json(nested=is_nested_fun(item_id))
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_leaves'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '29', '44', '55', '71', '216']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '18', 'type': 'conditional_expression', 'children': ['19', '22', '25'], 'value': 'if'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'comparison_operator', 'children': ['23', '24'], 'value': 'is'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '24', 'type': 'None', 'children': []}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'get_children_graph'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38', '41']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'language'}, {'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'counts'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'get_children_counts'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'active'}; {'id': '54', 'type': 'None', 'children': []}, {'id': '55', 'type': 'if_statement', 'children': ['56', '59']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': 'is'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '70', 'type': 'argument_list', 'children': []}, {'id': '71', 'type': 'function_definition', 'children': ['72', '73', '75']}; {'id': '72', 'type': 'function_name', 'children': [], 'value': '_get_leaves'}, {'id': '73', 'type': 'parameters', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '75', 'type': 'block', 'children': ['76', '82', '134', '174', '188', '198', '212']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'leaves'}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '81', 'type': 'argument_list', 'children': []}; {'id': '82', 'type': 'function_definition', 'children': ['83', '84', '86']}, {'id': '83', 'type': 'function_name', 'children': [], 'value': '__search'}; {'id': '84', 'type': 'parameters', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'item_ids'}; {'id': '86', 'type': 'block', 'children': ['87', '107', '123', '130']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'flatten'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'list_comprehension', 'children': ['97', '104']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'children'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '103', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '104', 'type': 'for_in_clause', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'item_ids'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'new_leaves'}; {'id': '110', 'type': 'set_comprehension', 'children': ['111', '112', '115']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '112', 'type': 'for_in_clause', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '115', 'type': 'if_clause', 'children': ['116']}; {'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': 'not'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '122', 'type': 'argument_list', 'children': []}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'leaves'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'new_leaves'}; {'id': '130', 'type': 'return_statement', 'children': ['131']}, {'id': '131', 'type': 'binary_operator', 'children': ['132', '133'], 'value': '-'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'new_leaves'}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'fixed_point'}, {'id': '137', 'type': 'argument_list', 'children': ['138', '149', '158', '167', '170']}; {'id': '138', 'type': 'keyword_argument', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'is_zero'}; {'id': '140', 'type': 'lambda', 'children': ['141', '143']}, {'id': '141', 'type': 'lambda_parameters', 'children': ['142']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'to_visit'}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '148'], 'value': '=='}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'to_visit'}; {'id': '148', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'minus'}, {'id': '151', 'type': 'lambda', 'children': ['152', '155']}; {'id': '152', 'type': 'lambda_parameters', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'to_visit'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'visited'}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '157'], 'value': '-'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'to_visit'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'visited'}; {'id': '158', 'type': 'keyword_argument', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'plus'}; {'id': '160', 'type': 'lambda', 'children': ['161', '164']}, {'id': '161', 'type': 'lambda_parameters', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'visited_x'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'visited_y'}; {'id': '164', 'type': 'binary_operator', 'children': ['165', '166'], 'value': '|'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'visited_x'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'visited_y'}, {'id': '167', 'type': 'keyword_argument', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': '__search'}; {'id': '170', 'type': 'keyword_argument', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '172', 'type': 'set', 'children': ['173']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'leaves'}, {'id': '177', 'type': 'set_comprehension', 'children': ['178', '179', '182']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'leaf'}, {'id': '179', 'type': 'for_in_clause', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'leaf'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'leaves'}; {'id': '182', 'type': 'if_clause', 'children': ['183']}, {'id': '183', 'type': 'comparison_operator', 'children': ['184', '187'], 'value': '=='}; {'id': '184', 'type': 'subscript', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'counts'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'leaf'}, {'id': '187', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '188', 'type': 'if_statement', 'children': ['189', '195']}, {'id': '189', 'type': 'comparison_operator', 'children': ['190', '194'], 'value': '>'}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'leaves'}; {'id': '194', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '195', 'type': 'block', 'children': ['196']}; {'id': '196', 'type': 'return_statement', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'leaves'}; {'id': '198', 'type': 'if_statement', 'children': ['199', '208']}, {'id': '199', 'type': 'boolean_operator', 'children': ['200', '205'], 'value': 'and'}; {'id': '200', 'type': 'comparison_operator', 'children': ['201', '204'], 'value': '=='}, {'id': '201', 'type': 'subscript', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'counts'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '204', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '205', 'type': 'comparison_operator', 'children': ['206', '207'], 'value': 'not'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'forbidden_item_ids'}; {'id': '208', 'type': 'block', 'children': ['209']}, {'id': '209', 'type': 'return_statement', 'children': ['210']}; {'id': '210', 'type': 'set', 'children': ['211']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '212', 'type': 'return_statement', 'children': ['213']}, {'id': '213', 'type': 'call', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '215', 'type': 'argument_list', 'children': []}; {'id': '216', 'type': 'return_statement', 'children': ['217']}, {'id': '217', 'type': 'dictionary_comprehension', 'children': ['218', '224']}; {'id': '218', 'type': 'pair', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '220', 'type': 'call', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': '_get_leaves'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '224', 'type': 'for_in_clause', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'item_id'} | def get_leaves(self, item_ids=None, language=None, forbidden_item_ids=None):
forbidden_item_ids = set() if forbidden_item_ids is None else set(forbidden_item_ids)
children = self.get_children_graph(item_ids, language=language, forbidden_item_ids=forbidden_item_ids)
counts = self.get_children_counts(active=None)
if item_ids is None:
item_ids = set(children.keys())
def _get_leaves(item_id):
leaves = set()
def __search(item_ids):
result = set(flatten([children.get(item_id, []) for item_id in item_ids]))
new_leaves = {item_id for item_id in result if item_id not in children.keys()}
leaves.update(new_leaves)
return result - new_leaves
fixed_point(
is_zero=lambda to_visit: len(to_visit) == 0,
minus=lambda to_visit, visited: to_visit - visited,
plus=lambda visited_x, visited_y: visited_x | visited_y,
f=__search,
x={item_id}
)
leaves = {leaf for leaf in leaves if counts[leaf] == 0}
if len(leaves) > 0:
return leaves
if counts[item_id] == 0 and item_id not in forbidden_item_ids:
return {item_id}
return set()
return {item_id: _get_leaves(item_id) for item_id in item_ids} |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_image'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'imgtype'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'tags'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'nsfw'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'hidden'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'filetype'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '33', '48', '63', '78', '104', '119', '153']}, {'id': '21', 'type': 'if_statement', 'children': ['22', '27']}; {'id': '22', 'type': 'boolean_operator', 'children': ['23', '25'], 'value': 'and'}, {'id': '23', 'type': 'not_operator', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'imgtype'}, {'id': '25', 'type': 'not_operator', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'tags'}, {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'raise_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'MissingTypeOrTags'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'string', 'children': [], 'value': '"\'get_image\' requires at least one of either type or tags."'}, {'id': '33', 'type': 'if_statement', 'children': ['34', '42']}; {'id': '34', 'type': 'boolean_operator', 'children': ['35', '36'], 'value': 'and'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'imgtype'}; {'id': '36', 'type': 'not_operator', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'imgtype'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'raise_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'string', 'children': [], 'value': '"type of \'imgtype\' must be str."'}; {'id': '48', 'type': 'if_statement', 'children': ['49', '57']}, {'id': '49', 'type': 'boolean_operator', 'children': ['50', '51'], 'value': 'and'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'tags'}, {'id': '51', 'type': 'not_operator', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'tags'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'raise_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'string', 'children': [], 'value': '"type of \'tags\' must be list or None."'}, {'id': '63', 'type': 'if_statement', 'children': ['64', '72']}; {'id': '64', 'type': 'boolean_operator', 'children': ['65', '66'], 'value': 'and'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'hidden'}; {'id': '66', 'type': 'not_operator', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'hidden'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'bool'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'raise_statement', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'string', 'children': [], 'value': '"type of \'hidden\' must be bool or None."'}; {'id': '78', 'type': 'if_statement', 'children': ['79', '98']}, {'id': '79', 'type': 'boolean_operator', 'children': ['80', '88'], 'value': 'and'}; {'id': '80', 'type': 'boolean_operator', 'children': ['81', '82'], 'value': 'and'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'nsfw'}; {'id': '82', 'type': 'not_operator', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '85', 'type': 'argument_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'nsfw'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'bool'}; {'id': '88', 'type': 'parenthesized_expression', 'children': ['89']}, {'id': '89', 'type': 'boolean_operator', 'children': ['90', '95'], 'value': 'and'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'nsfw'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': '=='}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'nsfw'}, {'id': '97', 'type': 'string', 'children': [], 'value': "'only'"}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'raise_statement', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'string', 'children': [], 'value': '"type of \'nsfw\' must be str, bool or None."'}; {'id': '104', 'type': 'if_statement', 'children': ['105', '113']}, {'id': '105', 'type': 'boolean_operator', 'children': ['106', '107'], 'value': 'and'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'filetype'}, {'id': '107', 'type': 'not_operator', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'filetype'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'raise_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'string', 'children': [], 'value': '"type of \'filetype\' must be str."'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '122', 'type': 'binary_operator', 'children': ['123', '148'], 'value': '+'}, {'id': '123', 'type': 'binary_operator', 'children': ['124', '143'], 'value': '+'}; {'id': '124', 'type': 'binary_operator', 'children': ['125', '138'], 'value': '+'}, {'id': '125', 'type': 'binary_operator', 'children': ['126', '133'], 'value': '+'}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '128'], 'value': '+'}, {'id': '127', 'type': 'string', 'children': [], 'value': "'https://api.weeb.sh/images/random'"}; {'id': '128', 'type': 'parenthesized_expression', 'children': ['129']}, {'id': '129', 'type': 'conditional_expression', 'children': ['130', '131', '132'], 'value': 'if'}; {'id': '130', 'type': 'string', 'children': [], 'value': "f'?type={imgtype}'"}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'imgtype'}; {'id': '132', 'type': 'string', 'children': [], 'value': "''"}, {'id': '133', 'type': 'parenthesized_expression', 'children': ['134']}; {'id': '134', 'type': 'conditional_expression', 'children': ['135', '136', '137'], 'value': 'if'}, {'id': '135', 'type': 'string', 'children': [], 'value': 'f\'{"?" if not imgtype else "&"}tags={",".join(tags)}\''}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'tags'}, {'id': '137', 'type': 'string', 'children': [], 'value': "''"}; {'id': '138', 'type': 'parenthesized_expression', 'children': ['139']}, {'id': '139', 'type': 'conditional_expression', 'children': ['140', '141', '142'], 'value': 'if'}; {'id': '140', 'type': 'string', 'children': [], 'value': "f'&nsfw={nsfw.lower()}'"}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'nsfw'}; {'id': '142', 'type': 'string', 'children': [], 'value': "''"}, {'id': '143', 'type': 'parenthesized_expression', 'children': ['144']}; {'id': '144', 'type': 'conditional_expression', 'children': ['145', '146', '147'], 'value': 'if'}, {'id': '145', 'type': 'string', 'children': [], 'value': "f'&hidden={hidden}'"}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'hidden'}, {'id': '147', 'type': 'string', 'children': [], 'value': "''"}; {'id': '148', 'type': 'parenthesized_expression', 'children': ['149']}, {'id': '149', 'type': 'conditional_expression', 'children': ['150', '151', '152'], 'value': 'if'}; {'id': '150', 'type': 'string', 'children': [], 'value': "f'&filetype={filetype}'"}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'filetype'}; {'id': '152', 'type': 'string', 'children': [], 'value': "''"}, {'id': '153', 'type': 'with_statement', 'children': ['154', '164']}; {'id': '154', 'type': 'with_clause', 'children': ['155']}, {'id': '155', 'type': 'with_item', 'children': ['156']}; {'id': '156', 'type': 'as_pattern', 'children': ['157', '162']}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'aiohttp'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'ClientSession'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'as_pattern_target', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '164', 'type': 'block', 'children': ['165']}, {'id': '165', 'type': 'with_statement', 'children': ['166', '182']}; {'id': '166', 'type': 'with_clause', 'children': ['167']}, {'id': '167', 'type': 'with_item', 'children': ['168']}; {'id': '168', 'type': 'as_pattern', 'children': ['169', '180']}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '175', 'type': 'keyword_argument', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'headers'}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': '__headers'}; {'id': '180', 'type': 'as_pattern_target', 'children': ['181']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '182', 'type': 'block', 'children': ['183']}, {'id': '183', 'type': 'if_statement', 'children': ['184', '189', '210']}; {'id': '184', 'type': 'comparison_operator', 'children': ['185', '188'], 'value': '=='}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'resp'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '188', 'type': 'integer', 'children': [], 'value': '200'}, {'id': '189', 'type': 'block', 'children': ['190', '199']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'js'}, {'id': '193', 'type': 'await', 'children': ['194']}; {'id': '194', 'type': 'call', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'resp'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '198', 'type': 'argument_list', 'children': []}, {'id': '199', 'type': 'return_statement', 'children': ['200']}; {'id': '200', 'type': 'list', 'children': ['201', '204', '207'], 'value': "[js['url'], js['id'], js['fileType']]"}, {'id': '201', 'type': 'subscript', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'js'}, {'id': '203', 'type': 'string', 'children': [], 'value': "'url'"}; {'id': '204', 'type': 'subscript', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'js'}; {'id': '206', 'type': 'string', 'children': [], 'value': "'id'"}, {'id': '207', 'type': 'subscript', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'js'}, {'id': '209', 'type': 'string', 'children': [], 'value': "'fileType'"}; {'id': '210', 'type': 'else_clause', 'children': ['211']}, {'id': '211', 'type': 'block', 'children': ['212']}; {'id': '212', 'type': 'raise_statement', 'children': ['213']}, {'id': '213', 'type': 'call', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '215', 'type': 'argument_list', 'children': ['216']}; {'id': '216', 'type': 'subscript', 'children': ['217', '224']}, {'id': '217', 'type': 'parenthesized_expression', 'children': ['218']}; {'id': '218', 'type': 'await', 'children': ['219']}, {'id': '219', 'type': 'call', 'children': ['220', '223']}; {'id': '220', 'type': 'attribute', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '223', 'type': 'argument_list', 'children': []} | async def get_image(self, imgtype=None, tags=None, nsfw=None, hidden=None, filetype=None):
if not imgtype and not tags:
raise MissingTypeOrTags("'get_image' requires at least one of either type or tags.")
if imgtype and not isinstance(imgtype, str):
raise TypeError("type of 'imgtype' must be str.")
if tags and not isinstance(tags, list):
raise TypeError("type of 'tags' must be list or None.")
if hidden and not isinstance(hidden, bool):
raise TypeError("type of 'hidden' must be bool or None.")
if nsfw and not isinstance(nsfw, bool) and (isinstance(nsfw, str) and nsfw == 'only'):
raise TypeError("type of 'nsfw' must be str, bool or None.")
if filetype and not isinstance(filetype, str):
raise TypeError("type of 'filetype' must be str.")
url = 'https://api.weeb.sh/images/random' + (f'?type={imgtype}' if imgtype else '') + (
f'{"?" if not imgtype else "&"}tags={",".join(tags)}' if tags else '') + (
f'&nsfw={nsfw.lower()}' if nsfw else '') + (f'&hidden={hidden}' if hidden else '') + (
f'&filetype={filetype}' if filetype else '')
async with aiohttp.ClientSession() as session:
async with session.get(url, headers=self.__headers) as resp:
if resp.status == 200:
js = await resp.json()
return [js['url'], js['id'], js['fileType']]
else:
raise Exception((await resp.json())['message']) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'query'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'logfile'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'jobID'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '17', '47', '70', '76', '82', '86', '114', '129', '142']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'joblist'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'logfile'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'readFromLogfile'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'if_statement', 'children': ['18', '29', '40']}; {'id': '18', 'type': 'boolean_operator', 'children': ['19', '20'], 'value': 'and'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'jobID'}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '25'], 'value': '=='}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'jobID'}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'command'}, {'id': '33', 'type': 'list', 'children': ['34', '35', '36'], 'value': "['qstat', '-j', str(jobID)]"}; {'id': '34', 'type': 'string', 'children': [], 'value': "'qstat'"}, {'id': '35', 'type': 'string', 'children': [], 'value': "'-j'"}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'jobID'}; {'id': '40', 'type': 'else_clause', 'children': ['41']}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'command'}, {'id': '45', 'type': 'list', 'children': ['46'], 'value': "['qstat']"}; {'id': '46', 'type': 'string', 'children': [], 'value': "'qstat'"}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'processoutput'}; {'id': '50', 'type': 'call', 'children': ['51', '69']}, {'id': '51', 'type': 'attribute', 'children': ['52', '68']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'Popen'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58', '63']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'command'}; {'id': '58', 'type': 'keyword_argument', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'PIPE'}, {'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'PIPE'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'communicate'}, {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'processoutput'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'serror'}, {'id': '79', 'type': 'subscript', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'processoutput'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'jobs'}, {'id': '85', 'type': 'dictionary', 'children': []}; {'id': '86', 'type': 'if_statement', 'children': ['87', '96']}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '92'], 'value': '=='}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'jobID'}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '96', 'type': 'block', 'children': ['97']}, {'id': '97', 'type': 'if_statement', 'children': ['98', '107', '110']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '105'], 'value': '!='}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'serror'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'string', 'children': [], 'value': '"Following jobs do not exist"'}, {'id': '105', 'type': 'unary_operator', 'children': ['106'], 'value': '-'}; {'id': '106', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'return_statement', 'children': ['109']}, {'id': '109', 'type': 'False', 'children': []}; {'id': '110', 'type': 'else_clause', 'children': ['111']}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'return_statement', 'children': ['113']}, {'id': '113', 'type': 'True', 'children': []}; {'id': '114', 'type': 'if_statement', 'children': ['115', '121']}, {'id': '115', 'type': 'not_operator', 'children': ['116']}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '120', 'type': 'argument_list', 'children': []}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'colorprinter'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'message'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'string', 'children': [], 'value': '"No jobs running at present."'}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '132', 'type': 'call', 'children': ['133', '140']}, {'id': '133', 'type': 'attribute', 'children': ['134', '139']}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '138', 'type': 'argument_list', 'children': []}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '149']}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '148'], 'value': '>'}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '146', 'type': 'argument_list', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '148', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '149', 'type': 'block', 'children': ['150', '374']}; {'id': '150', 'type': 'for_statement', 'children': ['151', '152', '157']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '154', 'type': 'slice', 'children': ['155', '156']}, {'id': '155', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '156', 'type': 'colon', 'children': []}, {'id': '157', 'type': 'block', 'children': ['158', '166', '175', '181', '217', '221', '275', '295', '308', '316']}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'assignment', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '165', 'type': 'argument_list', 'children': []}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'jid'}, {'id': '169', 'type': 'call', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'subscript', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '174', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'assignment', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'jobstate'}; {'id': '178', 'type': 'subscript', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '180', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'assignment', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '184', 'type': 'dictionary', 'children': ['185', '188', '193', '198', '203', '206']}, {'id': '185', 'type': 'pair', 'children': ['186', '187']}; {'id': '186', 'type': 'string', 'children': [], 'value': '"jobid"'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'jid'}; {'id': '188', 'type': 'pair', 'children': ['189', '190']}, {'id': '189', 'type': 'string', 'children': [], 'value': '"prior"'}; {'id': '190', 'type': 'subscript', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '193', 'type': 'pair', 'children': ['194', '195']}; {'id': '194', 'type': 'string', 'children': [], 'value': '"name"'}, {'id': '195', 'type': 'subscript', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '197', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '198', 'type': 'pair', 'children': ['199', '200']}, {'id': '199', 'type': 'string', 'children': [], 'value': '"user"'}; {'id': '200', 'type': 'subscript', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '202', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '203', 'type': 'pair', 'children': ['204', '205']}; {'id': '204', 'type': 'string', 'children': [], 'value': '"state"'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'jobstate'}; {'id': '206', 'type': 'pair', 'children': ['207', '208']}, {'id': '207', 'type': 'string', 'children': [], 'value': '"submit/start at"'}; {'id': '208', 'type': 'binary_operator', 'children': ['209', '210'], 'value': '%'}, {'id': '209', 'type': 'string', 'children': [], 'value': '"%s %s"'}; {'id': '210', 'type': 'tuple', 'children': ['211', '214']}, {'id': '211', 'type': 'subscript', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '213', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '214', 'type': 'subscript', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '216', 'type': 'integer', 'children': [], 'value': '6'}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'assignment', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'jataskID'}; {'id': '220', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '221', 'type': 'if_statement', 'children': ['222', '225', '242']}; {'id': '222', 'type': 'comparison_operator', 'children': ['223', '224'], 'value': '=='}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'jobstate'}; {'id': '224', 'type': 'string', 'children': [], 'value': '"r"'}, {'id': '225', 'type': 'block', 'children': ['226', '234']}; {'id': '226', 'type': 'expression_statement', 'children': ['227']}, {'id': '227', 'type': 'assignment', 'children': ['228', '231']}; {'id': '228', 'type': 'subscript', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '230', 'type': 'string', 'children': [], 'value': '"queue"'}, {'id': '231', 'type': 'subscript', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '233', 'type': 'integer', 'children': [], 'value': '7'}; {'id': '234', 'type': 'expression_statement', 'children': ['235']}, {'id': '235', 'type': 'assignment', 'children': ['236', '239']}; {'id': '236', 'type': 'subscript', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '238', 'type': 'string', 'children': [], 'value': '"slots"'}, {'id': '239', 'type': 'subscript', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '241', 'type': 'integer', 'children': [], 'value': '8'}; {'id': '242', 'type': 'elif_clause', 'children': ['243', '246']}, {'id': '243', 'type': 'comparison_operator', 'children': ['244', '245'], 'value': '=='}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'jobstate'}, {'id': '245', 'type': 'string', 'children': [], 'value': '"qw"'}; {'id': '246', 'type': 'block', 'children': ['247', '255']}, {'id': '247', 'type': 'expression_statement', 'children': ['248']}; {'id': '248', 'type': 'assignment', 'children': ['249', '252']}, {'id': '249', 'type': 'subscript', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '251', 'type': 'string', 'children': [], 'value': '"slots"'}; {'id': '252', 'type': 'subscript', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '254', 'type': 'integer', 'children': [], 'value': '7'}, {'id': '255', 'type': 'if_statement', 'children': ['256', '262']}; {'id': '256', 'type': 'comparison_operator', 'children': ['257', '261'], 'value': '>='}, {'id': '257', 'type': 'call', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '259', 'type': 'argument_list', 'children': ['260']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '261', 'type': 'integer', 'children': [], 'value': '9'}; {'id': '262', 'type': 'block', 'children': ['263', '269']}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'assignment', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'jataskID'}; {'id': '266', 'type': 'subscript', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '268', 'type': 'integer', 'children': [], 'value': '8'}, {'id': '269', 'type': 'expression_statement', 'children': ['270']}; {'id': '270', 'type': 'assignment', 'children': ['271', '274']}, {'id': '271', 'type': 'subscript', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '273', 'type': 'string', 'children': [], 'value': '"ja-task-ID"'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'jataskID'}, {'id': '275', 'type': 'if_statement', 'children': ['276', '282']}; {'id': '276', 'type': 'comparison_operator', 'children': ['277', '281'], 'value': '>'}, {'id': '277', 'type': 'call', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '279', 'type': 'argument_list', 'children': ['280']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '281', 'type': 'integer', 'children': [], 'value': '9'}; {'id': '282', 'type': 'block', 'children': ['283', '289']}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'jataskID'}; {'id': '286', 'type': 'subscript', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '288', 'type': 'integer', 'children': [], 'value': '9'}, {'id': '289', 'type': 'expression_statement', 'children': ['290']}; {'id': '290', 'type': 'assignment', 'children': ['291', '294']}, {'id': '291', 'type': 'subscript', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '293', 'type': 'string', 'children': [], 'value': '"ja-task-ID"'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'jataskID'}, {'id': '295', 'type': 'expression_statement', 'children': ['296']}; {'id': '296', 'type': 'assignment', 'children': ['297', '300']}, {'id': '297', 'type': 'subscript', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'jobs'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'jid'}; {'id': '300', 'type': 'boolean_operator', 'children': ['301', '307'], 'value': 'or'}, {'id': '301', 'type': 'call', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'jobs'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'jid'}, {'id': '307', 'type': 'dictionary', 'children': []}; {'id': '308', 'type': 'expression_statement', 'children': ['309']}, {'id': '309', 'type': 'assignment', 'children': ['310', '315']}; {'id': '310', 'type': 'subscript', 'children': ['311', '314']}, {'id': '311', 'type': 'subscript', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'jobs'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'jid'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'jataskID'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '316', 'type': 'if_statement', 'children': ['317', '323', '355']}, {'id': '317', 'type': 'call', 'children': ['318', '321']}; {'id': '318', 'type': 'attribute', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'joblist'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '321', 'type': 'argument_list', 'children': ['322']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'jid'}, {'id': '323', 'type': 'block', 'children': ['324', '332', '340']}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'assignment', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'jobdir'}, {'id': '327', 'type': 'subscript', 'children': ['328', '331']}; {'id': '328', 'type': 'subscript', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'joblist'}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'jid'}, {'id': '331', 'type': 'string', 'children': [], 'value': '"Directory"'}; {'id': '332', 'type': 'expression_statement', 'children': ['333']}, {'id': '333', 'type': 'assignment', 'children': ['334', '335']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'jobtime'}, {'id': '335', 'type': 'subscript', 'children': ['336', '339']}; {'id': '336', 'type': 'subscript', 'children': ['337', '338']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'joblist'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'jid'}, {'id': '339', 'type': 'string', 'children': [], 'value': '"TimeInSeconds"'}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'call', 'children': ['342', '345']}; {'id': '342', 'type': 'attribute', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'colorprinter'}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'message'}, {'id': '345', 'type': 'argument_list', 'children': ['346']}; {'id': '346', 'type': 'binary_operator', 'children': ['347', '348'], 'value': '%'}, {'id': '347', 'type': 'string', 'children': [], 'value': '"Job %d submitted %d minutes ago. Status: \'%s\'. Destination directory: %s."'}; {'id': '348', 'type': 'tuple', 'children': ['349', '350', '353', '354']}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'jid'}; {'id': '350', 'type': 'binary_operator', 'children': ['351', '352'], 'value': '/'}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'jobtime'}; {'id': '352', 'type': 'integer', 'children': [], 'value': '60'}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'jobstate'}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'jobdir'}, {'id': '355', 'type': 'else_clause', 'children': ['356']}; {'id': '356', 'type': 'block', 'children': ['357']}, {'id': '357', 'type': 'expression_statement', 'children': ['358']}; {'id': '358', 'type': 'call', 'children': ['359', '362']}, {'id': '359', 'type': 'attribute', 'children': ['360', '361']}; {'id': '360', 'type': 'identifier', 'children': [], 'value': 'colorprinter'}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '362', 'type': 'argument_list', 'children': ['363']}, {'id': '363', 'type': 'binary_operator', 'children': ['364', '365'], 'value': '%'}; {'id': '364', 'type': 'string', 'children': [], 'value': '"Job %d submitted at %s %s. Status: \'%s\'. Destination directory unknown."'}, {'id': '365', 'type': 'tuple', 'children': ['366', '367', '370', '373']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'jid'}, {'id': '367', 'type': 'subscript', 'children': ['368', '369']}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '369', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '370', 'type': 'subscript', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '372', 'type': 'integer', 'children': [], 'value': '6'}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'jobstate'}; {'id': '374', 'type': 'return_statement', 'children': ['375']}, {'id': '375', 'type': 'True', 'children': []} | def query(logfile, jobID = None):
joblist = logfile.readFromLogfile()
if jobID and type(jobID) == type(1):
command = ['qstat', '-j', str(jobID)]
else:
command = ['qstat']
processoutput = subprocess.Popen(command, stdout=subprocess.PIPE, stderr=subprocess.PIPE).communicate()
output = processoutput[0]
serror = processoutput[1]
jobs = {}
if type(jobID) == type(1):
if serror.find("Following jobs do not exist") != -1:
return False
else:
return True
if not output.strip():
colorprinter.message("No jobs running at present.")
output = output.strip().split("\n")
if len(output) > 2:
for line in output[2:]:
tokens = line.split()
jid = int(tokens[0])
jobstate = tokens[4]
details = { "jobid" : jid,
"prior" : tokens[1],
"name" : tokens[2],
"user" : tokens[3],
"state" : jobstate,
"submit/start at" : "%s %s" % (tokens[5], tokens[6])
}
jataskID = 0
if jobstate == "r":
details["queue"] = tokens[7]
details["slots"] = tokens[8]
elif jobstate == "qw":
details["slots"] = tokens[7]
if len(tokens) >= 9:
jataskID = tokens[8]
details["ja-task-ID"] = jataskID
if len(tokens) > 9:
jataskID = tokens[9]
details["ja-task-ID"] = jataskID
jobs[jid] = jobs.get(jid) or {}
jobs[jid][jataskID] = details
if joblist.get(jid):
jobdir = joblist[jid]["Directory"]
jobtime = joblist[jid]["TimeInSeconds"]
colorprinter.message("Job %d submitted %d minutes ago. Status: '%s'. Destination directory: %s." % (jid, jobtime / 60, jobstate, jobdir))
else:
colorprinter.message("Job %d submitted at %s %s. Status: '%s'. Destination directory unknown." % (jid, tokens[5], tokens[6], jobstate))
return True |
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{'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '18', 'type': 'argument_list', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'docker'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'Client'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'raise_statement', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': '"client needs to be of type docker.Client."'}, {'id': '29', 'type': 'if_statement', 'children': ['30', '48']}; {'id': '30', 'type': 'boolean_operator', 'children': ['31', '39'], 'value': 'or'}, {'id': '31', 'type': 'not_operator', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'docker_file'}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'string_types'}, {'id': '39', 'type': 'not_operator', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '46']}, {'id': '41', 'type': 'attribute', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'docker_file'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'raise_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': '"docker file path doesn\'t exist: {0}"'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'docker_file'}, {'id': '59', 'type': 'if_statement', 'children': ['60', '68']}; {'id': '60', 'type': 'not_operator', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'repository_tag'}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'raise_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'string', 'children': [], 'value': "'repository must be a string'"}; {'id': '74', 'type': 'if_statement', 'children': ['75', '77']}, {'id': '75', 'type': 'not_operator', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '81', 'type': 'string', 'children': [], 'value': "'latest'"}; {'id': '82', 'type': 'if_statement', 'children': ['83', '89']}, {'id': '83', 'type': 'not_operator', 'children': ['84']}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'use_cache'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'bool'}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'raise_statement', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'string', 'children': [], 'value': '"use_cache must be a bool. {0} was passed."'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'use_cache'}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'no_cache'}, {'id': '103', 'type': 'not_operator', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'use_cache'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '109']}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '108'], 'value': 'not'}, {'id': '107', 'type': 'string', 'children': [], 'value': "':'"}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'repository_tag'}, {'id': '109', 'type': 'block', 'children': ['110']}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'repository_tag'}, {'id': '113', 'type': 'call', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'string', 'children': [], 'value': '"{0}:{1}"'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '117', 'type': 'argument_list', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'repository_tag'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'assignment', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'file_obj'}, {'id': '123', 'type': 'None', 'children': []}; {'id': '124', 'type': 'try_statement', 'children': ['125', '211', '219']}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'if_statement', 'children': ['127', '135', '186']}, {'id': '127', 'type': 'call', 'children': ['128', '133']}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'isfile'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'docker_file'}, {'id': '135', 'type': 'block', 'children': ['136', '144', '160']}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'getcwd'}, {'id': '143', 'type': 'argument_list', 'children': []}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'docker_file'}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'string', 'children': [], 'value': '"./{0}"'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'call', 'children': ['153', '158']}, {'id': '153', 'type': 'attribute', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'relpath'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'docker_file'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '163', 'type': 'call', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'build'}, {'id': '167', 'type': 'argument_list', 'children': ['168', '171', '174', '177', '180', '183']}; {'id': '168', 'type': 'keyword_argument', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'nocache'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'no_cache'}; {'id': '174', 'type': 'keyword_argument', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'dockerfile'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'docker_file'}, {'id': '177', 'type': 'keyword_argument', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'repository_tag'}; {'id': '180', 'type': 'keyword_argument', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'rm'}; {'id': '182', 'type': 'True', 'children': []}, {'id': '183', 'type': 'keyword_argument', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'stream'}, {'id': '185', 'type': 'True', 'children': []}; {'id': '186', 'type': 'else_clause', 'children': ['187']}, {'id': '187', 'type': 'block', 'children': ['188']}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'assignment', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'build'}, {'id': '195', 'type': 'argument_list', 'children': ['196', '199', '202', '205', '208']}; {'id': '196', 'type': 'keyword_argument', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'docker_file'}, {'id': '199', 'type': 'keyword_argument', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'repository_tag'}; {'id': '202', 'type': 'keyword_argument', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'rm'}; {'id': '204', 'type': 'True', 'children': []}, {'id': '205', 'type': 'keyword_argument', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'nocache'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'no_cache'}; {'id': '208', 'type': 'keyword_argument', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'stream'}; {'id': '210', 'type': 'True', 'children': []}, {'id': '211', 'type': 'except_clause', 'children': ['212', '216']}; {'id': '212', 'type': 'as_pattern', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '214', 'type': 'as_pattern_target', 'children': ['215']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'raise_statement', 'children': ['218']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '219', 'type': 'finally_clause', 'children': ['220']}; {'id': '220', 'type': 'block', 'children': ['221']}, {'id': '221', 'type': 'if_statement', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'file_obj'}, {'id': '223', 'type': 'block', 'children': ['224']}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'file_obj'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'close'}, {'id': '229', 'type': 'argument_list', 'children': []}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'call', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'parse_stream'}, {'id': '233', 'type': 'argument_list', 'children': ['234']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'client'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '240', 'type': 'argument_list', 'children': []}, {'id': '241', 'type': 'return_statement', 'children': ['242']}; {'id': '242', 'type': 'call', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'Image'}; {'id': '244', 'type': 'argument_list', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'client'} | def build(client, repository_tag, docker_file, tag=None, use_cache=False):
if not isinstance(client, docker.Client):
raise TypeError("client needs to be of type docker.Client.")
if not isinstance(docker_file, six.string_types) or not os.path.exists(docker_file):
raise Exception("docker file path doesn't exist: {0}".format(docker_file))
if not isinstance(repository_tag, six.string_types):
raise TypeError('repository must be a string')
if not tag:
tag = 'latest'
if not isinstance(use_cache, bool):
raise TypeError("use_cache must be a bool. {0} was passed.".format(use_cache))
no_cache = not use_cache
if ':' not in repository_tag:
repository_tag = "{0}:{1}".format(repository_tag, tag)
file_obj = None
try:
if os.path.isfile(docker_file):
path = os.getcwd()
docker_file = "./{0}".format(os.path.relpath(docker_file))
response = client.build(
path=path,
nocache=no_cache,
dockerfile=docker_file,
tag=repository_tag,
rm=True,
stream=True
)
else:
response = client.build(path=docker_file, tag=repository_tag, rm=True, nocache=no_cache, stream=True)
except Exception as e:
raise e
finally:
if file_obj:
file_obj.close()
parse_stream(response)
client.close()
return Image(client, repository_tag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_class'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '5', 'type': 'block', 'children': ['6', '25']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '12']}, {'id': '7', 'type': 'comparison_operator', 'children': ['8', '11'], 'value': '=='}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '11', 'type': 'string', 'children': [], 'value': "'GET'"}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'return_statement', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'render'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18', '19', '20']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '18', 'type': 'string', 'children': [], 'value': "'classes_create.html'"}, {'id': '19', 'type': 'dictionary', 'children': []}; {'id': '20', 'type': 'keyword_argument', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'help_text'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'create_class'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '25', 'type': 'if_statement', 'children': ['26', '31', '213']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '30'], 'value': '=='}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '30', 'type': 'string', 'children': [], 'value': "'POST'"}, {'id': '31', 'type': 'block', 'children': ['32', '72', '86', '129', '160', '178', '191', '197']}; {'id': '32', 'type': 'if_statement', 'children': ['33', '50']}, {'id': '33', 'type': 'boolean_operator', 'children': ['34', '42'], 'value': 'or'}; {'id': '34', 'type': 'not_operator', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'not_operator', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '49', 'type': 'string', 'children': [], 'value': '"userprofile"'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'return_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56', '66', '69']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '56', 'type': 'dictionary', 'children': ['57', '63']}, {'id': '57', 'type': 'pair', 'children': ['58', '59']}; {'id': '58', 'type': 'string', 'children': [], 'value': "'error'"}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'User is not logged in.'"}, {'id': '63', 'type': 'pair', 'children': ['64', '65']}; {'id': '64', 'type': 'string', 'children': [], 'value': "'error_type'"}, {'id': '65', 'type': 'string', 'children': [], 'value': "'user_unauthorized'"}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '68', 'type': 'string', 'children': [], 'value': "'classes_create.html'"}, {'id': '69', 'type': 'keyword_argument', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '401'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'json_body'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '84']}, {'id': '79', 'type': 'attribute', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'decode'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'string', 'children': [], 'value': '"utf-8"'}; {'id': '86', 'type': 'if_statement', 'children': ['87', '107']}, {'id': '87', 'type': 'boolean_operator', 'children': ['88', '91'], 'value': 'and'}; {'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': 'in'}, {'id': '89', 'type': 'string', 'children': [], 'value': "'code'"}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '91', 'type': 'call', 'children': ['92', '106']}; {'id': '92', 'type': 'attribute', 'children': ['93', '105']}, {'id': '93', 'type': 'call', 'children': ['94', '99']}; {'id': '94', 'type': 'attribute', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'Class'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'keyword_argument', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '102', 'type': 'subscript', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '104', 'type': 'string', 'children': [], 'value': "'code'"}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '106', 'type': 'argument_list', 'children': []}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'return_statement', 'children': ['109']}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '111', 'type': 'argument_list', 'children': ['112', '113', '123', '126']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '113', 'type': 'dictionary', 'children': ['114', '120']}; {'id': '114', 'type': 'pair', 'children': ['115', '116']}, {'id': '115', 'type': 'string', 'children': [], 'value': "'error'"}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'string', 'children': [], 'value': "'A class with this code already exists.'"}; {'id': '120', 'type': 'pair', 'children': ['121', '122']}, {'id': '121', 'type': 'string', 'children': [], 'value': "'error_type'"}; {'id': '122', 'type': 'string', 'children': [], 'value': "'class_with_code_exists'"}, {'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '125', 'type': 'string', 'children': [], 'value': "'classes_create.html'"}; {'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '128', 'type': 'integer', 'children': [], 'value': '400'}, {'id': '129', 'type': 'if_statement', 'children': ['130', '138']}; {'id': '130', 'type': 'boolean_operator', 'children': ['131', '134'], 'value': 'or'}, {'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': 'not'}; {'id': '132', 'type': 'string', 'children': [], 'value': "'name'"}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '134', 'type': 'not_operator', 'children': ['135']}, {'id': '135', 'type': 'subscript', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '137', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '138', 'type': 'block', 'children': ['139']}, {'id': '139', 'type': 'return_statement', 'children': ['140']}; {'id': '140', 'type': 'call', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '142', 'type': 'argument_list', 'children': ['143', '144', '154', '157']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '144', 'type': 'dictionary', 'children': ['145', '151']}, {'id': '145', 'type': 'pair', 'children': ['146', '147']}; {'id': '146', 'type': 'string', 'children': [], 'value': "'error'"}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'string', 'children': [], 'value': "'Class name is missing.'"}, {'id': '151', 'type': 'pair', 'children': ['152', '153']}; {'id': '152', 'type': 'string', 'children': [], 'value': "'error_type'"}, {'id': '153', 'type': 'string', 'children': [], 'value': "'missing_class_name'"}; {'id': '154', 'type': 'keyword_argument', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '156', 'type': 'string', 'children': [], 'value': "'classes_create.html'"}, {'id': '157', 'type': 'keyword_argument', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '159', 'type': 'integer', 'children': [], 'value': '400'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '163', 'type': 'call', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'Class'}, {'id': '165', 'type': 'argument_list', 'children': ['166', '171']}; {'id': '166', 'type': 'keyword_argument', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '168', 'type': 'subscript', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '170', 'type': 'string', 'children': [], 'value': "'name'"}, {'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'owner'}, {'id': '173', 'type': 'attribute', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'userprofile'}; {'id': '178', 'type': 'if_statement', 'children': ['179', '182']}, {'id': '179', 'type': 'comparison_operator', 'children': ['180', '181'], 'value': 'in'}; {'id': '180', 'type': 'string', 'children': [], 'value': "'code'"}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '182', 'type': 'block', 'children': ['183']}, {'id': '183', 'type': 'expression_statement', 'children': ['184']}; {'id': '184', 'type': 'assignment', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'code'}; {'id': '188', 'type': 'subscript', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '190', 'type': 'string', 'children': [], 'value': "'code'"}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '196', 'type': 'argument_list', 'children': []}, {'id': '197', 'type': 'return_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '200', 'type': 'argument_list', 'children': ['201', '202', '207', '210']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '202', 'type': 'call', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'to_json'}; {'id': '206', 'type': 'argument_list', 'children': []}, {'id': '207', 'type': 'keyword_argument', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '209', 'type': 'string', 'children': [], 'value': "'classes_create.html'"}; {'id': '210', 'type': 'keyword_argument', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '212', 'type': 'integer', 'children': [], 'value': '201'}, {'id': '213', 'type': 'else_clause', 'children': ['214']}; {'id': '214', 'type': 'block', 'children': ['215']}, {'id': '215', 'type': 'return_statement', 'children': ['216']}; {'id': '216', 'type': 'call', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'call', 'children': ['220', '223']}; {'id': '220', 'type': 'attribute', 'children': ['221', '222']}, {'id': '221', 'type': 'string', 'children': [], 'value': '"method %s is not allowed"'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'request'} | def create_class(request):
if request.method == 'GET':
return render(request, 'classes_create.html', {}, help_text=create_class.__doc__)
if request.method == 'POST':
if not request.user.is_authenticated() or not hasattr(request.user, "userprofile"):
return render_json(request, {
'error': _('User is not logged in.'),
'error_type': 'user_unauthorized'
}, template='classes_create.html', status=401)
data = json_body(request.body.decode("utf-8"))
if 'code' in data and Class.objects.filter(code=data['code']).exists():
return render_json(request, {
'error': _('A class with this code already exists.'),
'error_type': 'class_with_code_exists'
}, template='classes_create.html', status=400)
if 'name' not in data or not data['name']:
return render_json(request, {'error': _('Class name is missing.'), 'error_type': 'missing_class_name'},
template='classes_create.html', status=400)
cls = Class(name=data['name'], owner=request.user.userprofile)
if 'code' in data:
cls.code = data['code']
cls.save()
return render_json(request, cls.to_json(), template='classes_create.html', status=201)
else:
return HttpResponseBadRequest("method %s is not allowed".format(request.method)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_student'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '5', 'type': 'block', 'children': ['6', '43', '62']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '16']}, {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'get_config'}; {'id': '10', 'type': 'argument_list', 'children': ['11', '12', '13']}, {'id': '11', 'type': 'string', 'children': [], 'value': "'proso_user'"}; {'id': '12', 'type': 'string', 'children': [], 'value': "'allow_create_students'"}, {'id': '13', 'type': 'keyword_argument', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '15', 'type': 'False', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '32', '35', '40']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '22', 'type': 'dictionary', 'children': ['23', '29']}, {'id': '23', 'type': 'pair', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'error'"}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'Creation of new users is not allowed.'"}, {'id': '29', 'type': 'pair', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'error_type'"}, {'id': '31', 'type': 'string', 'children': [], 'value': "'student_creation_not_allowed'"}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}, {'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'help_text'}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'create_student'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': '__doc__'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '42', 'type': 'integer', 'children': [], 'value': '403'}, {'id': '43', 'type': 'if_statement', 'children': ['44', '49']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '48'], 'value': '=='}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'GET'"}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'return_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'render'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55', '56', '57']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '55', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}; {'id': '56', 'type': 'dictionary', 'children': []}, {'id': '57', 'type': 'keyword_argument', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'help_text'}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'create_student'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': '__doc__'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '68', '409']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '67'], 'value': '=='}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '67', 'type': 'string', 'children': [], 'value': "'POST'"}; {'id': '68', 'type': 'block', 'children': ['69', '109', '123', '175', '206', '217', '233', '288', '354', '371', '377', '388']}, {'id': '69', 'type': 'if_statement', 'children': ['70', '87']}; {'id': '70', 'type': 'boolean_operator', 'children': ['71', '79'], 'value': 'or'}, {'id': '71', 'type': 'not_operator', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '78']}, {'id': '73', 'type': 'attribute', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'}; {'id': '78', 'type': 'argument_list', 'children': []}, {'id': '79', 'type': 'not_operator', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '86', 'type': 'string', 'children': [], 'value': '"userprofile"'}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'return_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93', '103', '106']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '93', 'type': 'dictionary', 'children': ['94', '100']}; {'id': '94', 'type': 'pair', 'children': ['95', '96']}, {'id': '95', 'type': 'string', 'children': [], 'value': "'error'"}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'User is not logged in.'"}; {'id': '100', 'type': 'pair', 'children': ['101', '102']}, {'id': '101', 'type': 'string', 'children': [], 'value': "'error_type'"}; {'id': '102', 'type': 'string', 'children': [], 'value': "'user_unauthorized'"}, {'id': '103', 'type': 'keyword_argument', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '105', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}; {'id': '106', 'type': 'keyword_argument', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '401'}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'json_body'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '121']}; {'id': '116', 'type': 'attribute', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'string', 'children': [], 'value': '"utf-8"'}, {'id': '123', 'type': 'try_statement', 'children': ['124', '147']}; {'id': '124', 'type': 'block', 'children': ['125']}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '128', 'type': 'call', 'children': ['129', '134']}, {'id': '129', 'type': 'attribute', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'Class'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '134', 'type': 'argument_list', 'children': ['135', '140']}, {'id': '135', 'type': 'keyword_argument', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'pk'}, {'id': '137', 'type': 'subscript', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '139', 'type': 'string', 'children': [], 'value': "'class'"}; {'id': '140', 'type': 'keyword_argument', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'owner'}; {'id': '142', 'type': 'attribute', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'userprofile'}, {'id': '147', 'type': 'except_clause', 'children': ['148', '153']}; {'id': '148', 'type': 'tuple', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'Class'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'DoesNotExist'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'KeyError'}, {'id': '153', 'type': 'block', 'children': ['154']}; {'id': '154', 'type': 'return_statement', 'children': ['155']}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159', '169', '172']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '159', 'type': 'dictionary', 'children': ['160', '166']}; {'id': '160', 'type': 'pair', 'children': ['161', '162']}, {'id': '161', 'type': 'string', 'children': [], 'value': "'error'"}; {'id': '162', 'type': 'call', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'string', 'children': [], 'value': "'Class with given id not found.'"}; {'id': '166', 'type': 'pair', 'children': ['167', '168']}, {'id': '167', 'type': 'string', 'children': [], 'value': "'error_type'"}; {'id': '168', 'type': 'string', 'children': [], 'value': "'class_not_found'"}, {'id': '169', 'type': 'keyword_argument', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '171', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}; {'id': '172', 'type': 'keyword_argument', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '174', 'type': 'integer', 'children': [], 'value': '404'}, {'id': '175', 'type': 'if_statement', 'children': ['176', '184']}; {'id': '176', 'type': 'boolean_operator', 'children': ['177', '180'], 'value': 'or'}, {'id': '177', 'type': 'comparison_operator', 'children': ['178', '179'], 'value': 'not'}; {'id': '178', 'type': 'string', 'children': [], 'value': "'first_name'"}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '180', 'type': 'not_operator', 'children': ['181']}, {'id': '181', 'type': 'subscript', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '183', 'type': 'string', 'children': [], 'value': "'first_name'"}; {'id': '184', 'type': 'block', 'children': ['185']}, {'id': '185', 'type': 'return_statement', 'children': ['186']}; {'id': '186', 'type': 'call', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '188', 'type': 'argument_list', 'children': ['189', '190', '200', '203']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '190', 'type': 'dictionary', 'children': ['191', '197']}, {'id': '191', 'type': 'pair', 'children': ['192', '193']}; {'id': '192', 'type': 'string', 'children': [], 'value': "'error'"}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'string', 'children': [], 'value': "'First name code is missing.'"}, {'id': '197', 'type': 'pair', 'children': ['198', '199']}; {'id': '198', 'type': 'string', 'children': [], 'value': "'error_type'"}, {'id': '199', 'type': 'string', 'children': [], 'value': "'missing_first_name'"}; {'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '202', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}, {'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '205', 'type': 'integer', 'children': [], 'value': '400'}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'assignment', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '209', 'type': 'call', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'User'}, {'id': '211', 'type': 'argument_list', 'children': ['212']}; {'id': '212', 'type': 'keyword_argument', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'first_name'}; {'id': '214', 'type': 'subscript', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '216', 'type': 'string', 'children': [], 'value': "'first_name'"}, {'id': '217', 'type': 'if_statement', 'children': ['218', '224']}; {'id': '218', 'type': 'call', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'string', 'children': [], 'value': "'last_name'"}; {'id': '224', 'type': 'block', 'children': ['225']}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'assignment', 'children': ['227', '230']}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'last_name'}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '232', 'type': 'string', 'children': [], 'value': "'last_name'"}, {'id': '233', 'type': 'if_statement', 'children': ['234', '240']}; {'id': '234', 'type': 'call', 'children': ['235', '238']}, {'id': '235', 'type': 'attribute', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '238', 'type': 'argument_list', 'children': ['239']}, {'id': '239', 'type': 'string', 'children': [], 'value': "'email'"}; {'id': '240', 'type': 'block', 'children': ['241', '280']}, {'id': '241', 'type': 'if_statement', 'children': ['242', '258']}; {'id': '242', 'type': 'call', 'children': ['243', '257']}, {'id': '243', 'type': 'attribute', 'children': ['244', '256']}; {'id': '244', 'type': 'call', 'children': ['245', '250']}, {'id': '245', 'type': 'attribute', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'User'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '250', 'type': 'argument_list', 'children': ['251']}, {'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'email'}, {'id': '253', 'type': 'subscript', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '255', 'type': 'string', 'children': [], 'value': "'email'"}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '257', 'type': 'argument_list', 'children': []}; {'id': '258', 'type': 'block', 'children': ['259']}, {'id': '259', 'type': 'return_statement', 'children': ['260']}; {'id': '260', 'type': 'call', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'render_json'}; {'id': '262', 'type': 'argument_list', 'children': ['263', '264', '274', '277']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '264', 'type': 'dictionary', 'children': ['265', '271']}, {'id': '265', 'type': 'pair', 'children': ['266', '267']}; {'id': '266', 'type': 'string', 'children': [], 'value': "'error'"}, {'id': '267', 'type': 'call', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '269', 'type': 'argument_list', 'children': ['270']}; {'id': '270', 'type': 'string', 'children': [], 'value': "'There is already a user with the given e-mail.'"}, {'id': '271', 'type': 'pair', 'children': ['272', '273']}; {'id': '272', 'type': 'string', 'children': [], 'value': "'error_type'"}, {'id': '273', 'type': 'string', 'children': [], 'value': "'email_exists'"}; {'id': '274', 'type': 'keyword_argument', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '276', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}, {'id': '277', 'type': 'keyword_argument', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '279', 'type': 'integer', 'children': [], 'value': '400'}; {'id': '280', 'type': 'expression_statement', 'children': ['281']}, {'id': '281', 'type': 'assignment', 'children': ['282', '285']}; {'id': '282', 'type': 'attribute', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'email'}, {'id': '285', 'type': 'subscript', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '287', 'type': 'string', 'children': [], 'value': "'email'"}; {'id': '288', 'type': 'if_statement', 'children': ['289', '295', '343']}, {'id': '289', 'type': 'call', 'children': ['290', '293']}; {'id': '290', 'type': 'attribute', 'children': ['291', '292']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '293', 'type': 'argument_list', 'children': ['294']}; {'id': '294', 'type': 'string', 'children': [], 'value': "'username'"}, {'id': '295', 'type': 'block', 'children': ['296', '335']}; {'id': '296', 'type': 'if_statement', 'children': ['297', '313']}, {'id': '297', 'type': 'call', 'children': ['298', '312']}; {'id': '298', 'type': 'attribute', 'children': ['299', '311']}, {'id': '299', 'type': 'call', 'children': ['300', '305']}; {'id': '300', 'type': 'attribute', 'children': ['301', '304']}, {'id': '301', 'type': 'attribute', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'User'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'keyword_argument', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '308', 'type': 'subscript', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '310', 'type': 'string', 'children': [], 'value': "'username'"}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '312', 'type': 'argument_list', 'children': []}, {'id': '313', 'type': 'block', 'children': ['314']}; {'id': '314', 'type': 'return_statement', 'children': ['315']}, {'id': '315', 'type': 'call', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '317', 'type': 'argument_list', 'children': ['318', '319', '329', '332']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '319', 'type': 'dictionary', 'children': ['320', '326']}; {'id': '320', 'type': 'pair', 'children': ['321', '322']}, {'id': '321', 'type': 'string', 'children': [], 'value': "'error'"}; {'id': '322', 'type': 'call', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '324', 'type': 'argument_list', 'children': ['325']}, {'id': '325', 'type': 'string', 'children': [], 'value': "'There is already a user with the given username.'"}; {'id': '326', 'type': 'pair', 'children': ['327', '328']}, {'id': '327', 'type': 'string', 'children': [], 'value': "'error_type'"}; {'id': '328', 'type': 'string', 'children': [], 'value': "'username_exists'"}, {'id': '329', 'type': 'keyword_argument', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '331', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}; {'id': '332', 'type': 'keyword_argument', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '334', 'type': 'integer', 'children': [], 'value': '400'}, {'id': '335', 'type': 'expression_statement', 'children': ['336']}; {'id': '336', 'type': 'assignment', 'children': ['337', '340']}, {'id': '337', 'type': 'attribute', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '340', 'type': 'subscript', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '342', 'type': 'string', 'children': [], 'value': "'username'"}, {'id': '343', 'type': 'else_clause', 'children': ['344']}; {'id': '344', 'type': 'block', 'children': ['345']}, {'id': '345', 'type': 'expression_statement', 'children': ['346']}; {'id': '346', 'type': 'assignment', 'children': ['347', '350']}, {'id': '347', 'type': 'attribute', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '350', 'type': 'call', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'get_unused_username'}; {'id': '352', 'type': 'argument_list', 'children': ['353']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '354', 'type': 'if_statement', 'children': ['355', '361']}, {'id': '355', 'type': 'call', 'children': ['356', '359']}; {'id': '356', 'type': 'attribute', 'children': ['357', '358']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '359', 'type': 'argument_list', 'children': ['360']}; {'id': '360', 'type': 'string', 'children': [], 'value': "'password'"}, {'id': '361', 'type': 'block', 'children': ['362']}; {'id': '362', 'type': 'expression_statement', 'children': ['363']}, {'id': '363', 'type': 'call', 'children': ['364', '367']}; {'id': '364', 'type': 'attribute', 'children': ['365', '366']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'set_password'}, {'id': '367', 'type': 'argument_list', 'children': ['368']}; {'id': '368', 'type': 'subscript', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '370', 'type': 'string', 'children': [], 'value': "'password'"}, {'id': '371', 'type': 'expression_statement', 'children': ['372']}; {'id': '372', 'type': 'call', 'children': ['373', '376']}, {'id': '373', 'type': 'attribute', 'children': ['374', '375']}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '376', 'type': 'argument_list', 'children': []}, {'id': '377', 'type': 'expression_statement', 'children': ['378']}; {'id': '378', 'type': 'call', 'children': ['379', '384']}, {'id': '379', 'type': 'attribute', 'children': ['380', '383']}; {'id': '380', 'type': 'attribute', 'children': ['381', '382']}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'members'}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '384', 'type': 'argument_list', 'children': ['385']}, {'id': '385', 'type': 'attribute', 'children': ['386', '387']}; {'id': '386', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'userprofile'}; {'id': '388', 'type': 'return_statement', 'children': ['389']}, {'id': '389', 'type': 'call', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '391', 'type': 'argument_list', 'children': ['392', '393', '403', '406']}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '393', 'type': 'call', 'children': ['394', '399']}; {'id': '394', 'type': 'attribute', 'children': ['395', '398']}, {'id': '395', 'type': 'attribute', 'children': ['396', '397']}; {'id': '396', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '397', 'type': 'identifier', 'children': [], 'value': 'userprofile'}; {'id': '398', 'type': 'identifier', 'children': [], 'value': 'to_json'}, {'id': '399', 'type': 'argument_list', 'children': ['400']}; {'id': '400', 'type': 'keyword_argument', 'children': ['401', '402']}, {'id': '401', 'type': 'identifier', 'children': [], 'value': 'nested'}; {'id': '402', 'type': 'True', 'children': []}, {'id': '403', 'type': 'keyword_argument', 'children': ['404', '405']}; {'id': '404', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '405', 'type': 'string', 'children': [], 'value': "'class_create_student.html'"}; {'id': '406', 'type': 'keyword_argument', 'children': ['407', '408']}, {'id': '407', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '408', 'type': 'integer', 'children': [], 'value': '201'}, {'id': '409', 'type': 'else_clause', 'children': ['410']}; {'id': '410', 'type': 'block', 'children': ['411']}, {'id': '411', 'type': 'return_statement', 'children': ['412']}; {'id': '412', 'type': 'call', 'children': ['413', '414']}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'HttpResponseBadRequest'}; {'id': '414', 'type': 'argument_list', 'children': ['415']}, {'id': '415', 'type': 'call', 'children': ['416', '419']}; {'id': '416', 'type': 'attribute', 'children': ['417', '418']}, {'id': '417', 'type': 'string', 'children': [], 'value': '"method %s is not allowed"'}; {'id': '418', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '419', 'type': 'argument_list', 'children': ['420']}; {'id': '420', 'type': 'attribute', 'children': ['421', '422']}, {'id': '421', 'type': 'identifier', 'children': [], 'value': 'request'} | def create_student(request):
if not get_config('proso_user', 'allow_create_students', default=False):
return render_json(request, {
'error': _('Creation of new users is not allowed.'),
'error_type': 'student_creation_not_allowed'
}, template='class_create_student.html', help_text=create_student.__doc__, status=403)
if request.method == 'GET':
return render(request, 'class_create_student.html', {}, help_text=create_student.__doc__)
if request.method == 'POST':
if not request.user.is_authenticated() or not hasattr(request.user, "userprofile"):
return render_json(request, {
'error': _('User is not logged in.'),
'error_type': 'user_unauthorized'
}, template='class_create_student.html', status=401)
data = json_body(request.body.decode("utf-8"))
try:
cls = Class.objects.get(pk=data['class'], owner=request.user.userprofile)
except (Class.DoesNotExist, KeyError):
return render_json(request, {
'error': _('Class with given id not found.'),
'error_type': 'class_not_found',
}, template='class_create_student.html', status=404)
if 'first_name' not in data or not data['first_name']:
return render_json(request, {
'error': _('First name code is missing.'),
'error_type': 'missing_first_name'
}, template='class_create_student.html', status=400)
user = User(first_name=data['first_name'])
if data.get('last_name'):
user.last_name = data['last_name']
if data.get('email'):
if User.objects.filter(email=data['email']).exists():
return render_json(request, {
'error': _('There is already a user with the given e-mail.'),
'error_type': 'email_exists'
}, template='class_create_student.html', status=400)
user.email = data['email']
if data.get('username'):
if User.objects.filter(username=data['username']).exists():
return render_json(request, {
'error': _('There is already a user with the given username.'),
'error_type': 'username_exists'
}, template='class_create_student.html', status=400)
user.username = data['username']
else:
user.username = get_unused_username(user)
if data.get('password'):
user.set_password(data['password'])
user.save()
cls.members.add(user.userprofile)
return render_json(request, user.userprofile.to_json(nested=True), template='class_create_student.html', status=201)
else:
return HttpResponseBadRequest("method %s is not allowed".format(request.method)) |
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{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'hosts'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'time_period'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'time_range'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'default_parameter', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'case'}, {'id': '31', 'type': 'False', 'children': []}; {'id': '32', 'type': 'default_parameter', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'invert'}; {'id': '34', 'type': 'False', 'children': []}, {'id': '35', 'type': 'default_parameter', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '37', 'type': 'False', 'children': []}; {'id': '38', 'type': 'default_parameter', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'files_with_match'}; {'id': '40', 'type': 'None', 'children': []}, {'id': '41', 'type': 'default_parameter', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '43', 'type': 'False', 'children': []}; {'id': '44', 'type': 'default_parameter', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'quiet'}; {'id': '46', 'type': 'False', 'children': []}, {'id': '47', 'type': 'default_parameter', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'max_count'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'default_parameter', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'only_matching'}; {'id': '52', 'type': 'False', 'children': []}, {'id': '53', 'type': 'default_parameter', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'line_number'}, {'id': '55', 'type': 'False', 'children': []}; {'id': '56', 'type': 'default_parameter', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'with_filename'}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'default_parameter', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'ip_lookup'}, {'id': '61', 'type': 'False', 'children': []}; 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{'id': '92', 'type': 'identifier', 'children': [], 'value': 'cli_parser'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '94', 'type': 'argument_list', 'children': []}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'matcher'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'matcher'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'cfgfiles'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'cfgfiles'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'time_period'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'time_period'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'time_range'}; 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{'id': '156', 'type': 'assignment', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'quiet'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'quiet'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'max_count'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'max_count'}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'only_matching'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'only_matching'}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'line_number'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'line_number'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'assignment', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'with_filename'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'with_filename'}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'assignment', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'anonymize'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'anonymize'}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'ip_lookup'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'ip_lookup'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'uid_lookup'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'uid_lookup'}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'assignment', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'thread'}, {'id': '209', 'type': 'expression_statement', 'children': ['210']}; {'id': '210', 'type': 'assignment', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'context'}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'assignment', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'after_context'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'after_context'}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'assignment', 'children': ['223', '226']}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'before_context'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'before_context'}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'assignment', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'patterns'}; {'id': '232', 'type': 'conditional_expression', 'children': ['233', '235', '238'], 'value': 'if'}, {'id': '233', 'type': 'list', 'children': ['234'], 'value': "['']"}; {'id': '234', 'type': 'string', 'children': [], 'value': "''"}, {'id': '235', 'type': 'comparison_operator', 'children': ['236', '237'], 'value': 'is'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '237', 'type': 'None', 'children': []}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '239', 'type': 'if_statement', 'children': ['240', '243']}; {'id': '240', 'type': 'comparison_operator', 'children': ['241', '242'], 'value': 'is'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '242', 'type': 'None', 'children': []}, {'id': '243', 'type': 'block', 'children': ['244']}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'assignment', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'apps'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '250', 'type': 'if_statement', 'children': ['251', '254']}, {'id': '251', 'type': 'comparison_operator', 'children': ['252', '253'], 'value': 'is'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'hosts'}, {'id': '253', 'type': 'None', 'children': []}; {'id': '254', 'type': 'block', 'children': ['255']}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'assignment', 'children': ['257', '260']}, {'id': '257', 'type': 'attribute', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'hosts'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'hosts'}, {'id': '261', 'type': 'if_statement', 'children': ['262', '265']}; {'id': '262', 'type': 'comparison_operator', 'children': ['263', '264'], 'value': 'is'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '264', 'type': 'None', 'children': []}, {'id': '265', 'type': 'block', 'children': ['266']}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'assignment', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'filters'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '272', 'type': 'expression_statement', 'children': ['273']}, {'id': '273', 'type': 'assignment', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': '_lograptor'}, {'id': '275', 'type': 'call', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'LogRaptor'}, {'id': '277', 'type': 'argument_list', 'children': ['278']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '279', 'type': 'return_statement', 'children': ['280']}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': '_lograptor'} | def lograptor(files, patterns=None, matcher='ruled', cfgfiles=None, apps=None, hosts=None,
filters=None, time_period=None, time_range=None, case=False, invert=False,
word=False, files_with_match=None, count=False, quiet=False, max_count=0,
only_matching=False, line_number=False, with_filename=None,
ip_lookup=False, uid_lookup=False, anonymize=False, thread=False,
before_context=0, after_context=0, context=0):
cli_parser = create_argument_parser()
args = cli_parser.parse_args()
args.files = files
args.matcher = matcher
args.cfgfiles = cfgfiles
args.time_period = time_period
args.time_range = time_range
args.case = case
args.invert = invert
args.word = word
args.files_with_match = files_with_match
args.count = count
args.quiet = quiet
args.max_count = max_count
args.only_matching = only_matching
args.line_number = line_number
args.with_filename = with_filename
args.anonymize = anonymize
args.ip_lookup = ip_lookup
args.uid_lookup = uid_lookup
args.thread = thread
args.context = context
args.after_context = after_context
args.before_context = before_context
args.patterns = [''] if patterns is None else patterns
if apps is not None:
args.apps = apps
if hosts is not None:
args.hosts = hosts
if filters is not None:
args.filters = filters
_lograptor = LogRaptor(args)
return _lograptor() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sanitize_codon_list'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'codon_list'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'forbidden_seqs'}, {'id': '7', 'type': 'tuple', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '31', '37', '53', '68', '89', '102', '106', '122']}, {'id': '9', 'type': 'for_statement', 'children': ['10', '11', '12']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'codon'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'codon_list'}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '20']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '19'], 'value': '!='}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'codon'}, {'id': '19', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'raise_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': '"Codons must have exactly 3 bases: \'{}\'"'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'codon'}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '36', 'type': 'argument_list', 'children': []}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'union'}; {'id': '42', 'type': 'generator_expression', 'children': ['43', '50']}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'restriction_sites'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '50', 'type': 'for_in_clause', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'forbidden_seqs'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'union'}; {'id': '58', 'type': 'generator_expression', 'children': ['59', '65']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'reverse_complement'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '65', 'type': 'for_in_clause', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'union'}, {'id': '73', 'type': 'generator_expression', 'children': ['74', '84']}; {'id': '74', 'type': 'binary_operator', 'children': ['75', '76'], 'value': '*'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '76', 'type': 'parenthesized_expression', 'children': ['77']}, {'id': '77', 'type': 'binary_operator', 'children': ['78', '83'], 'value': '+'}; {'id': '78', 'type': 'subscript', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'gen9'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'homopolymer_max_lengths'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '83', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '84', 'type': 'for_in_clause', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'dna_bases'}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}; {'id': '92', 'type': 'list_comprehension', 'children': ['93', '99']}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'dna_to_re'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'bs'}, {'id': '99', 'type': 'for_in_clause', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'bs'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'num_corrections'}, {'id': '105', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '106', 'type': 'for_statement', 'children': ['107', '108', '109']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'bad_seq'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}, {'id': '109', 'type': 'block', 'children': ['110']}; {'id': '110', 'type': 'while_statement', 'children': ['111', '117']}, {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'remove_bad_sequence'}, {'id': '113', 'type': 'argument_list', 'children': ['114', '115', '116']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'codon_list'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'bad_seq'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'bad_seqs'}, {'id': '117', 'type': 'block', 'children': ['118']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'augmented_assignment', 'children': ['120', '121'], 'value': '+='}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'num_corrections'}, {'id': '121', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '122', 'type': 'return_statement', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'num_corrections'} | def sanitize_codon_list(codon_list, forbidden_seqs=()):
for codon in codon_list:
if len(codon) != 3:
raise ValueError("Codons must have exactly 3 bases: '{}'".format(codon))
bad_seqs = set()
bad_seqs.union(
restriction_sites.get(seq, seq)
for seq in forbidden_seqs)
bad_seqs.union(
dna.reverse_complement(seq)
for seq in bad_seqs)
bad_seqs.union(
base * (gen9.homopolymer_max_lengths[base] + 1)
for base in dna.dna_bases)
bad_seqs = [
dna.dna_to_re(bs)
for bs in bad_seqs]
num_corrections = 0
for bad_seq in bad_seqs:
while remove_bad_sequence(codon_list, bad_seq, bad_seqs):
num_corrections += 1
return num_corrections |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_node'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '6', 'type': 'block', 'children': ['7', '15']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '14', 'type': 'argument_list', 'children': []}, {'id': '15', 'type': 'if_statement', 'children': ['16', '24', '57']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '21'], 'value': '<='}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'm0'}; {'id': '24', 'type': 'block', 'children': ['25', '41']}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'other_nodes'}; {'id': '28', 'type': 'list_comprehension', 'children': ['29', '30', '33']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '30', 'type': 'for_in_clause', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '33', 'type': 'if_clause', 'children': ['34']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '38'], 'value': '!='}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '41', 'type': 'for_statement', 'children': ['42', '43', '44']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'other_nodes'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'connect'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '54']}, {'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '53', 'type': 'string', 'children': [], 'value': '"both"'}; {'id': '54', 'type': 'keyword_argument', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'whom'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '57', 'type': 'else_clause', 'children': ['58']}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'for_statement', 'children': ['60', '61', '67']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'idx_newvector'}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'xrange'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '67', 'type': 'block', 'children': ['68', '98', '116', '133', '146', '150', '174']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'these_nodes'}, {'id': '71', 'type': 'list_comprehension', 'children': ['72', '73', '76']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '73', 'type': 'for_in_clause', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '76', 'type': 'if_clause', 'children': ['77']}, {'id': '77', 'type': 'parenthesized_expression', 'children': ['78']}; {'id': '78', 'type': 'boolean_operator', 'children': ['79', '86'], 'value': 'and'}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '83'], 'value': '!='}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '86', 'type': 'not_operator', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'is_connected'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '95']}; {'id': '92', 'type': 'keyword_argument', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '94', 'type': 'string', 'children': [], 'value': '"either"'}, {'id': '95', 'type': 'keyword_argument', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'whom'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'outdegrees'}, {'id': '101', 'type': 'list_comprehension', 'children': ['102', '113']}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'vectors'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '112', 'type': 'string', 'children': [], 'value': '"outgoing"'}, {'id': '113', 'type': 'for_in_clause', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'these_nodes'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'ps'}, {'id': '119', 'type': 'list_comprehension', 'children': ['120', '130']}; {'id': '120', 'type': 'parenthesized_expression', 'children': ['121']}, {'id': '121', 'type': 'binary_operator', 'children': ['122', '123'], 'value': '/'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '123', 'type': 'parenthesized_expression', 'children': ['124']}; {'id': '124', 'type': 'binary_operator', 'children': ['125', '126'], 'value': '*'}, {'id': '125', 'type': 'float', 'children': [], 'value': '1.0'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'outdegrees'}; {'id': '130', 'type': 'for_in_clause', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'outdegrees'}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'rnd'}; {'id': '136', 'type': 'binary_operator', 'children': ['137', '142'], 'value': '*'}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'random'}, {'id': '141', 'type': 'argument_list', 'children': []}; {'id': '142', 'type': 'call', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'ps'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'cur'}, {'id': '149', 'type': 'float', 'children': [], 'value': '0.0'}; {'id': '150', 'type': 'for_statement', 'children': ['151', '154', '158']}, {'id': '151', 'type': 'pattern_list', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'ps'}; {'id': '158', 'type': 'block', 'children': ['159', '163']}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'augmented_assignment', 'children': ['161', '162'], 'value': '+='}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'cur'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '163', 'type': 'if_statement', 'children': ['164', '167']}; {'id': '164', 'type': 'comparison_operator', 'children': ['165', '166'], 'value': '<'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'rnd'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'cur'}, {'id': '167', 'type': 'block', 'children': ['168']}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'vector_to'}, {'id': '171', 'type': 'subscript', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'these_nodes'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'call', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'connect'}, {'id': '179', 'type': 'argument_list', 'children': ['180', '183']}; {'id': '180', 'type': 'keyword_argument', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '182', 'type': 'string', 'children': [], 'value': '"both"'}, {'id': '183', 'type': 'keyword_argument', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'whom'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'vector_to'} | def add_node(self, node):
nodes = self.nodes()
if len(nodes) <= self.m0:
other_nodes = [n for n in nodes if n.id != node.id]
for n in other_nodes:
node.connect(direction="both", whom=n)
else:
for idx_newvector in xrange(self.m):
these_nodes = [
n for n in nodes if (
n.id != node.id and
not n.is_connected(direction="either", whom=node))]
outdegrees = [
len(n.vectors(direction="outgoing")) for n in these_nodes]
ps = [(d / (1.0 * sum(outdegrees))) for d in outdegrees]
rnd = random.random() * sum(ps)
cur = 0.0
for i, p in enumerate(ps):
cur += p
if rnd < cur:
vector_to = these_nodes[i]
node.connect(direction="both", whom=vector_to) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_concepts_to_recalculate'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'lang'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '15', '32', '41', '49', '65', '81', '97', '107', '248', '257']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'only_one_user'}; {'id': '14', 'type': 'False', 'children': []}, {'id': '15', 'type': 'if_statement', 'children': ['16', '22']}; {'id': '16', 'type': 'not_operator', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'users'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '22', 'type': 'block', 'children': ['23', '27']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'only_one_user'}; {'id': '26', 'type': 'True', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '30', 'type': 'list', 'children': ['31'], 'value': '[users]'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'mapping'}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'get_item_concept_mapping'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'lang'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'current_user_stats'}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'lambda', 'children': ['48']}; {'id': '48', 'type': 'dictionary', 'children': []}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'user_stats_qs'}; {'id': '52', 'type': 'call', 'children': ['53', '58']}, {'id': '53', 'type': 'attribute', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'UserStat'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '62']}, {'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'user__in'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'stat'}; {'id': '64', 'type': 'string', 'children': [], 'value': '"answer_count"'}, {'id': '65', 'type': 'if_statement', 'children': ['66', '69']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': 'is'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'concepts'}; {'id': '68', 'type': 'None', 'children': []}, {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'user_stats_qs'}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'user_stats_qs'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'keyword_argument', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'concept__in'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '81', 'type': 'for_statement', 'children': ['82', '83', '84']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'user_stat'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'user_stats_qs'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '96']}, {'id': '87', 'type': 'subscript', 'children': ['88', '93']}; {'id': '88', 'type': 'subscript', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'current_user_stats'}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'user_stat'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'user_stat'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'concept_id'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'user_stat'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'concepts_to_recalculate'}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'lambda', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '106', 'type': 'argument_list', 'children': []}, {'id': '107', 'type': 'for_statement', 'children': ['108', '112', '137']}; {'id': '108', 'type': 'pattern_list', 'children': ['109', '110', '111']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '112', 'type': 'call', 'children': ['113', '132']}, {'id': '113', 'type': 'attribute', 'children': ['114', '131']}; {'id': '114', 'type': 'call', 'children': ['115', '128']}, {'id': '115', 'type': 'attribute', 'children': ['116', '126', '127']}; {'id': '116', 'type': 'call', 'children': ['117', '122']}, {'id': '117', 'type': 'attribute', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'Answer'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'user__in'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '126', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'values_list'}; {'id': '128', 'type': 'argument_list', 'children': ['129', '130']}, {'id': '129', 'type': 'string', 'children': [], 'value': '"user_id"'}; {'id': '130', 'type': 'string', 'children': [], 'value': '"item"'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'annotate'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'Max'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'string', 'children': [], 'value': '"time"'}, {'id': '137', 'type': 'block', 'children': ['138', '144', '155', '166']}; {'id': '138', 'type': 'if_statement', 'children': ['139', '142']}, {'id': '139', 'type': 'comparison_operator', 'children': ['140', '141'], 'value': 'not'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'mapping'}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'continue_statement', 'children': []}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'time_expiration_lower_bound'}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'get_config'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '151', '152']}; {'id': '150', 'type': 'string', 'children': [], 'value': "'proso_models'"}, {'id': '151', 'type': 'string', 'children': [], 'value': "'knowledge_overview.time_shift_hours'"}; {'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '154', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'time_expiration_factor'}; {'id': '158', 'type': 'call', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'get_config'}; {'id': '160', 'type': 'argument_list', 'children': ['161', '162', '163']}, {'id': '161', 'type': 'string', 'children': [], 'value': "'proso_models'"}; {'id': '162', 'type': 'string', 'children': [], 'value': "'knowledge_overview.time_expiration_factor'"}, {'id': '163', 'type': 'keyword_argument', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '166', 'type': 'for_statement', 'children': ['167', '168', '171']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '168', 'type': 'subscript', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'mapping'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '171', 'type': 'block', 'children': ['172', '213']}; {'id': '172', 'type': 'if_statement', 'children': ['173', '193']}, {'id': '173', 'type': 'boolean_operator', 'children': ['174', '183', '184'], 'value': 'and'}; {'id': '174', 'type': 'boolean_operator', 'children': ['175', '178'], 'value': 'and'}, {'id': '175', 'type': 'comparison_operator', 'children': ['176', '177'], 'value': 'in'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'current_user_stats'}; {'id': '178', 'type': 'comparison_operator', 'children': ['179', '180'], 'value': 'in'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '180', 'type': 'subscript', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'current_user_stats'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '183', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '184', 'type': 'comparison_operator', 'children': ['185', '192'], 'value': '>'}, {'id': '185', 'type': 'attribute', 'children': ['186', '191']}; {'id': '186', 'type': 'subscript', 'children': ['187', '190']}, {'id': '187', 'type': 'subscript', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'current_user_stats'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '193', 'type': 'block', 'children': ['194']}; {'id': '194', 'type': 'if_statement', 'children': ['195', '211']}, {'id': '195', 'type': 'not_operator', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'has_time_expired'}; {'id': '200', 'type': 'argument_list', 'children': ['201', '208', '209', '210']}, {'id': '201', 'type': 'attribute', 'children': ['202', '207']}; {'id': '202', 'type': 'subscript', 'children': ['203', '206']}, {'id': '203', 'type': 'subscript', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'current_user_stats'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'time_expiration_lower_bound'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'time_expiration_factor'}, {'id': '211', 'type': 'block', 'children': ['212']}; {'id': '212', 'type': 'continue_statement', 'children': []}, {'id': '213', 'type': 'if_statement', 'children': ['214', '238']}; {'id': '214', 'type': 'boolean_operator', 'children': ['215', '218'], 'value': 'or'}, {'id': '215', 'type': 'comparison_operator', 'children': ['216', '217'], 'value': 'is'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '217', 'type': 'None', 'children': []}; {'id': '218', 'type': 'comparison_operator', 'children': ['219', '220'], 'value': 'in'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '220', 'type': 'parenthesized_expression', 'children': ['221']}, {'id': '221', 'type': 'conditional_expression', 'children': ['222', '229', '237'], 'value': 'if'}; {'id': '222', 'type': 'list_comprehension', 'children': ['223', '226']}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '226', 'type': 'for_in_clause', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '229', 'type': 'comparison_operator', 'children': ['230', '236'], 'value': '=='}; {'id': '230', 'type': 'call', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '232', 'type': 'argument_list', 'children': ['233']}, {'id': '233', 'type': 'subscript', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '235', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'Concept'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'Concept'}; {'id': '238', 'type': 'block', 'children': ['239']}, {'id': '239', 'type': 'expression_statement', 'children': ['240']}; {'id': '240', 'type': 'call', 'children': ['241', '246']}, {'id': '241', 'type': 'attribute', 'children': ['242', '245']}; {'id': '242', 'type': 'subscript', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'concepts_to_recalculate'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '248', 'type': 'if_statement', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'only_one_user'}; {'id': '250', 'type': 'block', 'children': ['251']}, {'id': '251', 'type': 'return_statement', 'children': ['252']}; {'id': '252', 'type': 'subscript', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'concepts_to_recalculate'}; {'id': '254', 'type': 'subscript', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '256', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '257', 'type': 'return_statement', 'children': ['258']} | def get_concepts_to_recalculate(self, users, lang, concepts=None):
only_one_user = False
if not isinstance(users, list):
only_one_user = True
users = [users]
mapping = self.get_item_concept_mapping(lang)
current_user_stats = defaultdict(lambda: {})
user_stats_qs = UserStat.objects.filter(user__in=users, stat="answer_count")
if concepts is not None:
user_stats_qs = user_stats_qs.filter(concept__in=concepts)
for user_stat in user_stats_qs:
current_user_stats[user_stat.user_id][user_stat.concept_id] = user_stat
concepts_to_recalculate = defaultdict(lambda: set())
for user, item, time in Answer.objects.filter(user__in=users)\
.values_list("user_id", "item").annotate(Max("time")):
if item not in mapping:
continue
time_expiration_lower_bound = get_config('proso_models', 'knowledge_overview.time_shift_hours', default=4)
time_expiration_factor = get_config('proso_models', 'knowledge_overview.time_expiration_factor', default=2)
for concept in mapping[item]:
if user in current_user_stats and concept in current_user_stats[user] \
and current_user_stats[user][concept].time > time:
if not self.has_time_expired(current_user_stats[user][concept].time, time, time_expiration_lower_bound, time_expiration_factor):
continue
if concepts is None or concept in ([c.pk for c in concepts] if type(concepts[0]) == Concept else Concept):
concepts_to_recalculate[user].add(concept)
if only_one_user:
return concepts_to_recalculate[users[0]]
return concepts_to_recalculate |
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{'id': '32', 'type': 'identifier', 'children': [], 'value': 'get_concept_item_mapping'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'concepts'}; {'id': '36', 'type': 'call', 'children': ['37', '42']}, {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'Concept'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'pk__in'}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'concepts'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '55', 'type': 'argument_list', 'children': []}; {'id': '56', 'type': 'else_clause', 'children': ['57']}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '61', 'type': 'call', 'children': ['62', '67']}; {'id': '62', 'type': 'attribute', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Concept'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'get_concept_item_mapping'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'keyword_argument', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'lang'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'lang'}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'get_environment'}; {'id': '76', 'type': 'argument_list', 'children': []}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'mastery_threshold'}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'get_mastery_trashold'}; {'id': '82', 'type': 'argument_list', 'children': []}, {'id': '83', 'type': 'for_statement', 'children': ['84', '87', '92']}; {'id': '84', 'type': 'pattern_list', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'concepts'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '91', 'type': 'argument_list', 'children': []}; {'id': '92', 'type': 'block', 'children': ['93', '112', '122', '132', '160', '164', '170', '385', '396']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'all_items'}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'list_comprehension', 'children': ['106', '109']}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '109', 'type': 'for_in_clause', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'concepts'}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'answer_counts'}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'number_of_answers_more_items'}, {'id': '119', 'type': 'argument_list', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'all_items'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'correct_answer_counts'}, {'id': '125', 'type': 'call', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'number_of_correct_answers_more_items'}, {'id': '129', 'type': 'argument_list', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'all_items'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'predictions'}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'all_items'}, {'id': '145', 'type': 'call', 'children': ['146', '151']}; {'id': '146', 'type': 'attribute', 'children': ['147', '150']}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'get_predictive_model'}, {'id': '149', 'type': 'argument_list', 'children': []}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'predict_more_items'}, {'id': '151', 'type': 'argument_list', 'children': ['152', '153', '154', '155']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'environment'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'all_items'}, {'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'get_time_for_knowledge_overview'}, {'id': '159', 'type': 'argument_list', 'children': []}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'new_user_stats'}, {'id': '163', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'stats_to_delete_condition'}, {'id': '167', 'type': 'call', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'Q'}, {'id': '169', 'type': 'argument_list', 'children': []}; {'id': '170', 'type': 'for_statement', 'children': ['171', '172', '173']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'concepts'}, {'id': '173', 'type': 'block', 'children': ['174', '221', '342', '354']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'answer_aggregates'}, {'id': '177', 'type': 'call', 'children': ['178', '195']}; {'id': '178', 'type': 'attribute', 'children': ['179', '194']}, {'id': '179', 'type': 'call', 'children': ['180', '185']}; {'id': '180', 'type': 'attribute', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'Answer'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '185', 'type': 'argument_list', 'children': ['186', '189']}; {'id': '186', 'type': 'keyword_argument', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '189', 'type': 'keyword_argument', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'item__in'}, {'id': '191', 'type': 'subscript', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'aggregate'}, {'id': '195', 'type': 'argument_list', 'children': ['196', '202', '209', '215']}; {'id': '196', 'type': 'keyword_argument', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'time_spent'}; {'id': '198', 'type': 'call', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'Sum'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'string', 'children': [], 'value': '"response_time"'}; {'id': '202', 'type': 'keyword_argument', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'sessions'}; {'id': '204', 'type': 'call', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'Count'}; {'id': '206', 'type': 'argument_list', 'children': ['207', '208']}, {'id': '207', 'type': 'string', 'children': [], 'value': '"session"'}; {'id': '208', 'type': 'True', 'children': []}, {'id': '209', 'type': 'keyword_argument', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'time_first'}, {'id': '211', 'type': 'call', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'Min'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'string', 'children': [], 'value': '"time"'}, {'id': '215', 'type': 'keyword_argument', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'time_last'}, {'id': '217', 'type': 'call', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'Max'}, {'id': '219', 'type': 'argument_list', 'children': ['220']}; {'id': '220', 'type': 'string', 'children': [], 'value': '"time"'}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'assignment', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'stats'}; {'id': '224', 'type': 'dictionary', 'children': ['225', '238', '251', '259', '275', '291', '312', '319', '324', '333']}, {'id': '225', 'type': 'pair', 'children': ['226', '227']}; {'id': '226', 'type': 'string', 'children': [], 'value': '"answer_count"'}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '229', 'type': 'generator_expression', 'children': ['230', '233']}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'answer_counts'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '233', 'type': 'for_in_clause', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '235', 'type': 'subscript', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '238', 'type': 'pair', 'children': ['239', '240']}, {'id': '239', 'type': 'string', 'children': [], 'value': '"correct_answer_count"'}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '242', 'type': 'generator_expression', 'children': ['243', '246']}, {'id': '243', 'type': 'subscript', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'correct_answer_counts'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '246', 'type': 'for_in_clause', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '248', 'type': 'subscript', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '251', 'type': 'pair', 'children': ['252', '253']}; {'id': '252', 'type': 'string', 'children': [], 'value': '"item_count"'}, {'id': '253', 'type': 'call', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '255', 'type': 'argument_list', 'children': ['256']}; {'id': '256', 'type': 'subscript', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '259', 'type': 'pair', 'children': ['260', '261']}; {'id': '260', 'type': 'string', 'children': [], 'value': '"practiced_items_count"'}, {'id': '261', 'type': 'call', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '263', 'type': 'argument_list', 'children': ['264']}; {'id': '264', 'type': 'list_comprehension', 'children': ['265', '270']}, {'id': '265', 'type': 'comparison_operator', 'children': ['266', '269'], 'value': '>'}; {'id': '266', 'type': 'subscript', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'answer_counts'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '269', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '270', 'type': 'for_in_clause', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '272', 'type': 'subscript', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '275', 'type': 'pair', 'children': ['276', '277']}; {'id': '276', 'type': 'string', 'children': [], 'value': '"mastered_items_count"'}, {'id': '277', 'type': 'call', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '279', 'type': 'argument_list', 'children': ['280']}; {'id': '280', 'type': 'list_comprehension', 'children': ['281', '286']}, {'id': '281', 'type': 'comparison_operator', 'children': ['282', '285'], 'value': '>='}; {'id': '282', 'type': 'subscript', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'predictions'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'mastery_threshold'}; {'id': '286', 'type': 'for_in_clause', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '288', 'type': 'subscript', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '291', 'type': 'pair', 'children': ['292', '293']}; {'id': '292', 'type': 'string', 'children': [], 'value': '"prediction"'}, {'id': '293', 'type': 'binary_operator', 'children': ['294', '306'], 'value': '/'}; {'id': '294', 'type': 'call', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '296', 'type': 'argument_list', 'children': ['297']}, {'id': '297', 'type': 'list_comprehension', 'children': ['298', '301']}; {'id': '298', 'type': 'subscript', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'predictions'}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '301', 'type': 'for_in_clause', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '303', 'type': 'subscript', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '306', 'type': 'call', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '308', 'type': 'argument_list', 'children': ['309']}, {'id': '309', 'type': 'subscript', 'children': ['310', '311']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '312', 'type': 'pair', 'children': ['313', '314']}, {'id': '313', 'type': 'string', 'children': [], 'value': '"time_spent"'}; {'id': '314', 'type': 'binary_operator', 'children': ['315', '318'], 'value': '/'}, {'id': '315', 'type': 'subscript', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'answer_aggregates'}, {'id': '317', 'type': 'string', 'children': [], 'value': '"time_spent"'}; {'id': '318', 'type': 'integer', 'children': [], 'value': '1000'}, {'id': '319', 'type': 'pair', 'children': ['320', '321']}; {'id': '320', 'type': 'string', 'children': [], 'value': '"session_count"'}, {'id': '321', 'type': 'subscript', 'children': ['322', '323']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'answer_aggregates'}, {'id': '323', 'type': 'string', 'children': [], 'value': '"sessions"'}; {'id': '324', 'type': 'pair', 'children': ['325', '326']}, {'id': '325', 'type': 'string', 'children': [], 'value': '"time_first"'}; {'id': '326', 'type': 'call', 'children': ['327', '332']}, {'id': '327', 'type': 'attribute', 'children': ['328', '331']}; {'id': '328', 'type': 'subscript', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'answer_aggregates'}; {'id': '330', 'type': 'string', 'children': [], 'value': '"time_first"'}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'timestamp'}; {'id': '332', 'type': 'argument_list', 'children': []}, {'id': '333', 'type': 'pair', 'children': ['334', '335']}; {'id': '334', 'type': 'string', 'children': [], 'value': '"time_last"'}, {'id': '335', 'type': 'call', 'children': ['336', '341']}; {'id': '336', 'type': 'attribute', 'children': ['337', '340']}, {'id': '337', 'type': 'subscript', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'answer_aggregates'}, {'id': '339', 'type': 'string', 'children': [], 'value': '"time_last"'}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'timestamp'}, {'id': '341', 'type': 'argument_list', 'children': []}; {'id': '342', 'type': 'expression_statement', 'children': ['343']}, {'id': '343', 'type': 'augmented_assignment', 'children': ['344', '345'], 'value': '|='}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'stats_to_delete_condition'}, {'id': '345', 'type': 'call', 'children': ['346', '347']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'Q'}, {'id': '347', 'type': 'argument_list', 'children': ['348', '351']}; {'id': '348', 'type': 'keyword_argument', 'children': ['349', '350']}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '351', 'type': 'keyword_argument', 'children': ['352', '353']}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'concept'}; {'id': '354', 'type': 'for_statement', 'children': ['355', '358', '363']}, {'id': '355', 'type': 'pattern_list', 'children': ['356', '357']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'stat_name'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '358', 'type': 'call', 'children': ['359', '362']}, {'id': '359', 'type': 'attribute', 'children': ['360', '361']}; {'id': '360', 'type': 'identifier', 'children': [], 'value': 'stats'}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '362', 'type': 'argument_list', 'children': []}, {'id': '363', 'type': 'block', 'children': ['364']}; {'id': '364', 'type': 'expression_statement', 'children': ['365']}, {'id': '365', 'type': 'call', 'children': ['366', '369']}; {'id': '366', 'type': 'attribute', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'new_user_stats'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '369', 'type': 'argument_list', 'children': ['370']}; {'id': '370', 'type': 'call', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'UserStat'}; {'id': '372', 'type': 'argument_list', 'children': ['373', '376', '379', '382']}, {'id': '373', 'type': 'keyword_argument', 'children': ['374', '375']}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '376', 'type': 'keyword_argument', 'children': ['377', '378']}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'concept_id'}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '379', 'type': 'keyword_argument', 'children': ['380', '381']}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'stat'}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'stat_name'}; {'id': '382', 'type': 'keyword_argument', 'children': ['383', '384']}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '385', 'type': 'expression_statement', 'children': ['386']}; {'id': '386', 'type': 'call', 'children': ['387', '395']}, {'id': '387', 'type': 'attribute', 'children': ['388', '394']}; {'id': '388', 'type': 'call', 'children': ['389', '392']}, {'id': '389', 'type': 'attribute', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '392', 'type': 'argument_list', 'children': ['393']}, {'id': '393', 'type': 'identifier', 'children': [], 'value': 'stats_to_delete_condition'}; {'id': '394', 'type': 'identifier', 'children': [], 'value': 'delete'}, {'id': '395', 'type': 'argument_list', 'children': []}; {'id': '396', 'type': 'expression_statement', 'children': ['397']}, {'id': '397', 'type': 'call', 'children': ['398', '401']}; {'id': '398', 'type': 'attribute', 'children': ['399', '400']}, {'id': '399', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '400', 'type': 'identifier', 'children': [], 'value': 'bulk_create'}, {'id': '401', 'type': 'argument_list', 'children': ['402']} | def recalculate_concepts(self, concepts, lang=None):
if len(concepts) == 0:
return
if lang is None:
items = Concept.objects.get_concept_item_mapping(concepts=Concept.objects.filter(pk__in=set(flatten(concepts.values()))))
else:
items = Concept.objects.get_concept_item_mapping(lang=lang)
environment = get_environment()
mastery_threshold = get_mastery_trashold()
for user, concepts in concepts.items():
all_items = list(set(flatten([items[c] for c in concepts])))
answer_counts = environment.number_of_answers_more_items(all_items, user)
correct_answer_counts = environment.number_of_correct_answers_more_items(all_items, user)
predictions = dict(list(zip(all_items, get_predictive_model().
predict_more_items(environment, user, all_items, time=get_time_for_knowledge_overview()))))
new_user_stats = []
stats_to_delete_condition = Q()
for concept in concepts:
answer_aggregates = Answer.objects.filter(user=user, item__in=items[concept]).aggregate(
time_spent=Sum("response_time"),
sessions=Count("session", True),
time_first=Min("time"),
time_last=Max("time"),
)
stats = {
"answer_count": sum(answer_counts[i] for i in items[concept]),
"correct_answer_count": sum(correct_answer_counts[i] for i in items[concept]),
"item_count": len(items[concept]),
"practiced_items_count": sum([answer_counts[i] > 0 for i in items[concept]]),
"mastered_items_count": sum([predictions[i] >= mastery_threshold for i in items[concept]]),
"prediction": sum([predictions[i] for i in items[concept]]) / len(items[concept]),
"time_spent": answer_aggregates["time_spent"] / 1000,
"session_count": answer_aggregates["sessions"],
"time_first": answer_aggregates["time_first"].timestamp(),
"time_last": answer_aggregates["time_last"].timestamp(),
}
stats_to_delete_condition |= Q(user=user, concept=concept)
for stat_name, value in stats.items():
new_user_stats.append(UserStat(user_id=user, concept_id=concept, stat=stat_name, value=value))
self.filter(stats_to_delete_condition).delete()
self.bulk_create(new_user_stats) |
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{'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'Concept'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'get_concepts_to_recalculate'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '70', '71']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'lang'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'concepts'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79']}; {'id': '78', 'type': 'string', 'children': [], 'value': '"user_stats - getting identifying concepts to recalculate: %ss"'}, {'id': '79', 'type': 'parenthesized_expression', 'children': ['80']}; 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{'id': '206', 'type': 'identifier', 'children': [], 'value': 'concept'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'identifier'}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'user_stat'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'stat'}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'user_stat'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '214', 'type': 'if_statement', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'only_one_user'}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'return_statement', 'children': ['218']}; {'id': '218', 'type': 'subscript', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '220', 'type': 'conditional_expression', 'children': ['221', '226', '234'], 'value': 'if'}, {'id': '221', 'type': 'attribute', 'children': ['222', '225']}; {'id': '222', 'type': 'subscript', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '224', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '226', 'type': 'comparison_operator', 'children': ['227', '233'], 'value': '=='}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '229', 'type': 'argument_list', 'children': ['230']}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '232', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'User'}; {'id': '234', 'type': 'subscript', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '236', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '237', 'type': 'return_statement', 'children': ['238']} | def get_user_stats(self, users, lang=None, concepts=None, since=None, recalculate=True):
only_one_user = False
if not isinstance(users, list):
users = [users]
only_one_user = True
if recalculate:
if lang is None:
raise ValueError('Recalculation without lang is not supported.')
time_start = time_lib()
concepts_to_recalculate = Concept.objects.get_concepts_to_recalculate(users, lang, concepts)
LOGGER.debug("user_stats - getting identifying concepts to recalculate: %ss", (time_lib() - time_start))
time_start = time_lib()
self.recalculate_concepts(concepts_to_recalculate, lang)
LOGGER.debug("user_stats - recalculating concepts: %ss", (time_lib() - time_start))
qs = self.prepare_related().filter(user__in=users, concept__active=True)
if concepts is not None:
qs = qs.filter(concept__in=concepts)
if lang is not None:
qs = qs.filter(concept__lang=lang)
if since is not None:
qs = qs.filter(time__gte=since)
data = defaultdict(lambda: defaultdict(lambda: {}))
for user_stat in qs:
data[user_stat.user_id][user_stat.concept.identifier][user_stat.stat] = user_stat.value
if only_one_user:
return data[users[0].pk if type(users[0]) == User else users[0]]
return data |
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{'id': '112', 'type': 'identifier', 'children': [], 'value': 'locked'}, {'id': '113', 'type': 'block', 'children': ['114', '123']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'execute'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'lockstring'}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'assignment', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'locked'}; {'id': '128', 'type': 'True', 'children': []}, {'id': '129', 'type': 'if_statement', 'children': ['130', '131', '142']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'errcode'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'execute'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'sql'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '142', 'type': 'else_clause', 'children': ['143']}, {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'errcode'}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'execute'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'sql'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'lastrowid'}; {'id': '158', 'type': 'call', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '160', 'type': 'argument_list', 'children': ['161']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'lastrowid'}; {'id': '164', 'type': 'if_statement', 'children': ['165', '170']}, {'id': '165', 'type': 'boolean_operator', 'children': ['166', '167'], 'value': 'and'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'do_commit'}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'isInnoDB'}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '178']}, {'id': '173', 'type': 'attribute', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'connection'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'commit'}; {'id': '178', 'type': 'argument_list', 'children': []}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'assignment', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'fetchall'}; {'id': '186', 'type': 'argument_list', 'children': []}, {'id': '187', 'type': 'if_statement', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'locked'}, {'id': '189', 'type': 'block', 'children': ['190', '199']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'execute'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'unlockstring'}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'assignment', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'locked'}; {'id': '204', 'type': 'False', 'children': []}, {'id': '205', 'type': 'expression_statement', 'children': ['206']}; {'id': '206', 'type': 'call', 'children': ['207', '210']}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '210', 'type': 'argument_list', 'children': []}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'call', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': '_close_connection'}; {'id': '216', 'type': 'argument_list', 'children': []}, {'id': '217', 'type': 'return_statement', 'children': ['218']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '219', 'type': 'except_clause', 'children': ['220', '223', '224']}; {'id': '220', 'type': 'attribute', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'MySQLdb'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'OperationalError'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '224', 'type': 'block', 'children': ['225', '254', '260', '267', '273']}, {'id': '225', 'type': 'if_statement', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '227', 'type': 'block', 'children': ['228', '248']}; {'id': '228', 'type': 'if_statement', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'locked'}; {'id': '232', 'type': 'block', 'children': ['233', '242']}, {'id': '233', 'type': 'expression_statement', 'children': ['234']}; {'id': '234', 'type': 'call', 'children': ['235', '238']}, {'id': '235', 'type': 'attribute', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'execute'}; {'id': '238', 'type': 'argument_list', 'children': ['239']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'unlockstring'}; {'id': '242', 'type': 'expression_statement', 'children': ['243']}, {'id': '243', 'type': 'assignment', 'children': ['244', '247']}; {'id': '244', 'type': 'attribute', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'locked'}, {'id': '247', 'type': 'False', 'children': []}; {'id': '248', 'type': 'expression_statement', 'children': ['249']}, {'id': '249', 'type': 'call', 'children': ['250', '253']}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'close'}, {'id': '253', 'type': 'argument_list', 'children': []}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': '_close_connection'}, {'id': '259', 'type': 'argument_list', 'children': []}; {'id': '260', 'type': 'expression_statement', 'children': ['261']}, {'id': '261', 'type': 'assignment', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'caughte'}, {'id': '263', 'type': 'call', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '265', 'type': 'argument_list', 'children': ['266']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'assignment', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'errcode'}; {'id': '270', 'type': 'subscript', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '272', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '273', 'type': 'continue_statement', 'children': []}; {'id': '274', 'type': 'except_clause', 'children': ['275', '276', '277']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '277', 'type': 'block', 'children': ['278', '307', '313', '320', '326']}; {'id': '278', 'type': 'if_statement', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '280', 'type': 'block', 'children': ['281', '301']}, {'id': '281', 'type': 'if_statement', 'children': ['282', '285']}; {'id': '282', 'type': 'attribute', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'locked'}, {'id': '285', 'type': 'block', 'children': ['286', '295']}; {'id': '286', 'type': 'expression_statement', 'children': ['287']}, {'id': '287', 'type': 'call', 'children': ['288', '291']}; {'id': '288', 'type': 'attribute', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'execute'}, {'id': '291', 'type': 'argument_list', 'children': ['292']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'unlockstring'}, {'id': '295', 'type': 'expression_statement', 'children': ['296']}; {'id': '296', 'type': 'assignment', 'children': ['297', '300']}, {'id': '297', 'type': 'attribute', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'locked'}; {'id': '300', 'type': 'False', 'children': []}, {'id': '301', 'type': 'expression_statement', 'children': ['302']}; {'id': '302', 'type': 'call', 'children': ['303', '306']}, {'id': '303', 'type': 'attribute', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '306', 'type': 'argument_list', 'children': []}, {'id': '307', 'type': 'expression_statement', 'children': ['308']}; {'id': '308', 'type': 'call', 'children': ['309', '312']}, {'id': '309', 'type': 'attribute', 'children': ['310', '311']}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '311', 'type': 'identifier', 'children': [], 'value': '_close_connection'}; {'id': '312', 'type': 'argument_list', 'children': []}, {'id': '313', 'type': 'expression_statement', 'children': ['314']}; {'id': '314', 'type': 'assignment', 'children': ['315', '316']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'caughte'}; {'id': '316', 'type': 'call', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '318', 'type': 'argument_list', 'children': ['319']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '320', 'type': 'expression_statement', 'children': ['321']}, {'id': '321', 'type': 'call', 'children': ['322', '325']}; {'id': '322', 'type': 'attribute', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'traceback'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'print_exc'}, {'id': '325', 'type': 'argument_list', 'children': []}; {'id': '326', 'type': 'break_statement', 'children': []}, {'id': '327', 'type': 'expression_statement', 'children': ['328']}; {'id': '328', 'type': 'call', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'sleep'}; {'id': '330', 'type': 'argument_list', 'children': ['331']}, {'id': '331', 'type': 'float', 'children': [], 'value': '0.2'}; {'id': '332', 'type': 'if_statement', 'children': ['333', '335']}, {'id': '333', 'type': 'not_operator', 'children': ['334']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'quiet'}, {'id': '335', 'type': 'block', 'children': ['336', '358', '374']}; {'id': '336', 'type': 'expression_statement', 'children': ['337']}, {'id': '337', 'type': 'call', 'children': ['338', '343']}; {'id': '338', 'type': 'attribute', 'children': ['339', '342']}, {'id': '339', 'type': 'attribute', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '343', 'type': 'argument_list', 'children': ['344']}; {'id': '344', 'type': 'binary_operator', 'children': ['345', '346'], 'value': '%'}, {'id': '345', 'type': 'string', 'children': [], 'value': '"\\nSQL execution error in query %s at %s:"'}; {'id': '346', 'type': 'tuple', 'children': ['347', '348']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'sql'}; {'id': '348', 'type': 'call', 'children': ['349', '356']}, {'id': '349', 'type': 'attribute', 'children': ['350', '355']}; {'id': '350', 'type': 'call', 'children': ['351', '354']}, {'id': '351', 'type': 'attribute', 'children': ['352', '353']}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'now'}; {'id': '354', 'type': 'argument_list', 'children': []}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'strftime'}; {'id': '356', 'type': 'argument_list', 'children': ['357']}, {'id': '357', 'type': 'string', 'children': [], 'value': '"%Y-%m-%d %H:%M:%S"'}; {'id': '358', 'type': 'expression_statement', 'children': ['359']}, {'id': '359', 'type': 'call', 'children': ['360', '365']}; {'id': '360', 'type': 'attribute', 'children': ['361', '364']}, {'id': '361', 'type': 'attribute', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '364', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '365', 'type': 'argument_list', 'children': ['366']}; {'id': '366', 'type': 'binary_operator', 'children': ['367', '368'], 'value': '%'}, {'id': '367', 'type': 'string', 'children': [], 'value': '"\\nErrorcode/Error: %d - \'%s\'.\\n"'}; {'id': '368', 'type': 'tuple', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'errcode'}; {'id': '370', 'type': 'call', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '372', 'type': 'argument_list', 'children': ['373']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'caughte'}; {'id': '374', 'type': 'expression_statement', 'children': ['375']}, {'id': '375', 'type': 'call', 'children': ['376', '381']}; {'id': '376', 'type': 'attribute', 'children': ['377', '380']}, {'id': '377', 'type': 'attribute', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'flush'}, {'id': '381', 'type': 'argument_list', 'children': []}; {'id': '382', 'type': 'raise_statement', 'children': ['383']}, {'id': '383', 'type': 'call', 'children': ['384', '387']}; {'id': '384', 'type': 'attribute', 'children': ['385', '386']}, {'id': '385', 'type': 'identifier', 'children': [], 'value': 'MySQLdb'}; {'id': '386', 'type': 'identifier', 'children': [], 'value': 'OperationalError'}, {'id': '387', 'type': 'argument_list', 'children': ['388']} | def execute(self, sql, parameters = None, cursorClass = DictCursor, quiet = False, locked = False, do_commit = True):
i = 0
errcode = 0
caughte = None
cursor = None
if sql.find(";") != -1 or sql.find("\\G") != -1:
raise Exception("The SQL command '%s' contains a semi-colon or \\G. This is a potential SQL injection." % sql)
while i < self.numTries:
i += 1
try:
assert(not(self.connection) or not(self.connection.open))
self._get_connection(cursorClass)
cursor = self.connection.cursor()
if locked:
cursor.execute(self.lockstring)
self.locked = True
if parameters:
errcode = cursor.execute(sql, parameters)
else:
errcode = cursor.execute(sql)
self.lastrowid = int(cursor.lastrowid)
if do_commit and self.isInnoDB:
self.connection.commit()
results = cursor.fetchall()
if locked:
cursor.execute(self.unlockstring)
self.locked = False
cursor.close()
self._close_connection()
return results
except MySQLdb.OperationalError, e:
if cursor:
if self.locked:
cursor.execute(self.unlockstring)
self.locked = False
cursor.close()
self._close_connection()
caughte = str(e)
errcode = e[0]
continue
except Exception, e:
if cursor:
if self.locked:
cursor.execute(self.unlockstring)
self.locked = False
cursor.close()
self._close_connection()
caughte = str(e)
traceback.print_exc()
break
sleep(0.2)
if not quiet:
sys.stderr.write("\nSQL execution error in query %s at %s:" % (sql, datetime.now().strftime("%Y-%m-%d %H:%M:%S")))
sys.stderr.write("\nErrorcode/Error: %d - '%s'.\n" % (errcode, str(caughte)))
sys.stderr.flush()
raise MySQLdb.OperationalError(caughte) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_tasks'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'task_coro'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'addrs'}; {'id': '6', 'type': 'list_splat_pattern', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'dictionary_splat_pattern', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '13', 'type': 'block', 'children': ['14', '16', '20', '47']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'''Create and schedule a set of asynchronous tasks.\n The function creates the tasks using a given list of agent addresses and\n wraps each of them in :func:`asyncio.ensure_future`. The ``*args`` and\n ``**kwargs`` are passed down to :func:`task_coro` when creating tasks for\n each address in :attr:`addrs`.\n Usage example for a method in a class derived from\n :class:`~creamas.mp.MultiEnvironment`::\n async def my_method(self, *args, **kwargs):\n async def task(addr, *args, **kwargs):\n r_manager = await self.env.connect(addr)\n return await r_manager.my_method(*args, **kwargs)\n return await util.create_tasks(task, self.addrs, *args, **kwargs)\n :param task_coro:\n Coroutine which is used for each address in :attr:`addrs`. The\n coroutine should accept an agent address as the first parameter.\n :param list addrs:\n A list of agent addresses used as the first parameters of\n :func:`task_coro`.\n :param bool flatten:\n If ``True`` the returned results are flattened into one list if the\n tasks return iterable objects. The parameter does nothing if all the\n results are not iterable.\n :returns:\n An awaitable coroutine which returns the results of tasks as a list or\n as a flattened list\n '''"}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'tasks'}, {'id': '19', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '20', 'type': 'for_statement', 'children': ['21', '22', '23']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'agent_addr'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'addrs'}, {'id': '23', 'type': 'block', 'children': ['24', '40']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'task'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'asyncio'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ensure_future'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'task_coro'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36', '38']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'agent_addr'}; {'id': '36', 'type': 'list_splat', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '38', 'type': 'dictionary_splat', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'tasks'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'task'}, {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'wait_tasks'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'tasks'} | def create_tasks(task_coro, addrs, *args, flatten=True, **kwargs):
'''Create and schedule a set of asynchronous tasks.
The function creates the tasks using a given list of agent addresses and
wraps each of them in :func:`asyncio.ensure_future`. The ``*args`` and
``**kwargs`` are passed down to :func:`task_coro` when creating tasks for
each address in :attr:`addrs`.
Usage example for a method in a class derived from
:class:`~creamas.mp.MultiEnvironment`::
async def my_method(self, *args, **kwargs):
async def task(addr, *args, **kwargs):
r_manager = await self.env.connect(addr)
return await r_manager.my_method(*args, **kwargs)
return await util.create_tasks(task, self.addrs, *args, **kwargs)
:param task_coro:
Coroutine which is used for each address in :attr:`addrs`. The
coroutine should accept an agent address as the first parameter.
:param list addrs:
A list of agent addresses used as the first parameters of
:func:`task_coro`.
:param bool flatten:
If ``True`` the returned results are flattened into one list if the
tasks return iterable objects. The parameter does nothing if all the
results are not iterable.
:returns:
An awaitable coroutine which returns the results of tasks as a list or
as a flattened list
'''
tasks = []
for agent_addr in addrs:
task = asyncio.ensure_future(task_coro(agent_addr, *args, **kwargs))
tasks.append(task)
return wait_tasks(tasks, flatten) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'ERROR', 'children': ['2', '204']}; {'id': '2', 'type': 'function_definition', 'children': ['3', '4', '21']}, {'id': '3', 'type': 'function_name', 'children': [], 'value': 'write'}; {'id': '4', 'type': 'parameters', 'children': ['5', '6', '9', '12', '15', '18']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'propertybase'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'shorteners'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '21', 'type': 'block', 'children': ['22', '24', '28', '41', '47', '55', '62', '197']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'string', 'children': [], 'value': "'''\n models - input Versa models from which output is generated. Must be a sequence\n object, not an iterator\n '''"}; {'id': '24', 'type': 'assert_statement', 'children': ['25']}, {'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'is'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '27', 'type': 'None', 'children': []}; {'id': '28', 'type': 'if_statement', 'children': ['29', '35']}, {'id': '29', 'type': 'not_operator', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'models'}, {'id': '39', 'type': 'list', 'children': ['40'], 'value': '[models]'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'models'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'shorteners'}; {'id': '44', 'type': 'boolean_operator', 'children': ['45', '46'], 'value': 'or'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'shorteners'}; {'id': '46', 'type': 'dictionary', 'children': []}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'all_propertybase'}; {'id': '50', 'type': 'conditional_expression', 'children': ['51', '53', '54'], 'value': 'if'}, {'id': '51', 'type': 'list', 'children': ['52'], 'value': '[propertybase]'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'propertybase'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'propertybase'}; {'id': '54', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'all_propertybase'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'VERSA_BASEIRI'}; {'id': '62', 'type': 'if_statement', 'children': ['63', '70', '133']}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'tuple', 'children': ['67', '68', '69']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'propertybase'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'shorteners'}; {'id': '70', 'type': 'ERROR', 'children': ['71', '74', '94', '95', '117', '120', '122', '123', '124', '125']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '74', 'type': 'ERROR', 'children': ['75', '76', '77', '88']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'if'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'string', 'children': [], 'value': "' * @base: {0}'"}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'string', 'children': [], 'value': "'\\n\\n'"}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'origin_space'}, {'id': '95', 'type': 'ERROR', 'children': ['96', '104', '113', '114']}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '100', '103'], 'value': 'in'}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '99', 'type': 'argument_list', 'children': []}; {'id': '100', 'type': 'ERROR', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'for'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'origin_space'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'all_origins'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'for'}; {'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': 'in'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'origin_space'}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '120', 'type': 'ERROR', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'for'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'o_'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': 'in'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '133', 'type': 'block', 'children': ['134', '142', '147', '163']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'abbr_r'}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'abbreviate'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'all_propertybase'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'value_format'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'call', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '152', 'type': 'argument_list', 'children': ['153']}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'string', 'children': [], 'value': "'* {0}: {1}\\n'"}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'abbr_r'}, {'id': '159', 'type': 'call', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'value_format'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '163', 'type': 'for_statement', 'children': ['164', '167', '172']}; {'id': '164', 'type': 'pattern_list', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '171', 'type': 'argument_list', 'children': []}; {'id': '172', 'type': 'block', 'children': ['173', '181']}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'abbr_k'}; {'id': '176', 'type': 'call', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'abbreviate'}; {'id': '178', 'type': 'argument_list', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'all_propertybase'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '186', 'type': 'argument_list', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'string', 'children': [], 'value': "' * {0}: {1}\\n'"}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '191', 'type': 'argument_list', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'value_format'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'string', 'children': [], 'value': "'\\n'"} | def write(models, out=None, base=None, propertybase=None, shorteners=None, logger=logging):
'''
models - input Versa models from which output is generated. Must be a sequence
object, not an iterator
'''
assert out is not None
if not isinstance(models, list): models = [models]
shorteners = shorteners or {}
all_propertybase = [propertybase] if propertybase else []
all_propertybase.append(VERSA_BASEIRI)
if any((base, propertybase, shorteners)):
out.write('
if base:
out.write(' * @base: {0}'.format(base))
out.write('\n\n')
origin_space = set()
for m in models:
origin_space.update(all_origins(m))
for o in origin_space:
out.write('
for o_, r, t, a in m.match(o):
abbr_r = abbreviate(r, all_propertybase)
value_format(t)
out.write('* {0}: {1}\n'.format(abbr_r, value_format(t)))
for k, v in a.items():
abbr_k = abbreviate(k, all_propertybase)
out.write(' * {0}: {1}\n'.format(k, value_format(v)))
out.write('\n')
return |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'register_extensions'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'try_statement', 'children': ['7', '159']}, {'id': '7', 'type': 'block', 'children': ['8']}; {'id': '8', 'type': 'for_statement', 'children': ['9', '12', '21']}, {'id': '9', 'type': 'pattern_list', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'extension'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '12', 'type': 'call', 'children': ['13', '20']}, {'id': '13', 'type': 'attribute', 'children': ['14', '19']}; {'id': '14', 'type': 'subscript', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '18', 'type': 'string', 'children': [], 'value': "'extensions'"}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '26', '35', '62', '69']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'extension_bstr'}, {'id': '25', 'type': 'string', 'children': [], 'value': "''"}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'extension_pieces'}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'extension'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '35', 'type': 'if_statement', 'children': ['36', '42', '52']}; {'id': '36', 'type': 'comparison_operator', 'children': ['37', '41'], 'value': '>'}, {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'extension_pieces'}, {'id': '41', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'extension_bstr'}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'extension_pieces'}; {'id': '52', 'type': 'else_clause', 'children': ['53']}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'extension_bstr'}, {'id': '57', 'type': 'binary_operator', 'children': ['58', '59'], 'value': '%'}; {'id': '58', 'type': 'string', 'children': [], 'value': "'glim_extensions.%s'"}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'extension_pieces'}, {'id': '61', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'extension_module'}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'import_module'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'extension_bstr'}, {'id': '69', 'type': 'if_statement', 'children': ['70', '71', '148']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'extension_module'}, {'id': '71', 'type': 'block', 'children': ['72', '80', '90', '98', '108', '124']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'extension_startstr'}, {'id': '75', 'type': 'binary_operator', 'children': ['76', '77'], 'value': '%'}; {'id': '76', 'type': 'string', 'children': [], 'value': "'%s.%s'"}, {'id': '77', 'type': 'tuple', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'extension_bstr'}, {'id': '79', 'type': 'string', 'children': [], 'value': "'start'"}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'extension_start'}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'import_module'}, {'id': '85', 'type': 'argument_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'extension_startstr'}, {'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'pass_errors'}, {'id': '89', 'type': 'True', 'children': []}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'extension_cmdsstr'}, {'id': '93', 'type': 'binary_operator', 'children': ['94', '95'], 'value': '%'}; {'id': '94', 'type': 'string', 'children': [], 'value': "'%s.%s'"}, {'id': '95', 'type': 'tuple', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'extension_bstr'}, {'id': '97', 'type': 'string', 'children': [], 'value': "'commands'"}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'extension_cmds'}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'import_module'}, {'id': '103', 'type': 'argument_list', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'extension_cmdsstr'}, {'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'pass_errors'}, {'id': '107', 'type': 'True', 'children': []}; {'id': '108', 'type': 'if_statement', 'children': ['109', '112']}, {'id': '109', 'type': 'comparison_operator', 'children': ['110', '111'], 'value': 'is'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'extension_start'}, {'id': '111', 'type': 'None', 'children': []}; {'id': '112', 'type': 'block', 'children': ['113', '119']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'extension_start'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '124', 'type': 'if_statement', 'children': ['125', '128']}, {'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': 'is'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'extension_cmds'}, {'id': '127', 'type': 'None', 'children': []}; {'id': '128', 'type': 'block', 'children': ['129']}, {'id': '129', 'type': 'if_statement', 'children': ['130', '135']}; {'id': '130', 'type': 'comparison_operator', 'children': ['131', '134'], 'value': 'is'}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'commandadapter'}; {'id': '134', 'type': 'None', 'children': []}, {'id': '135', 'type': 'block', 'children': ['136']}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '143']}; {'id': '138', 'type': 'attribute', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'commandadapter'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'register_extension'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'extension_cmds'}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'extension_pieces'}, {'id': '147', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '148', 'type': 'else_clause', 'children': ['149']}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'GlimLog'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'binary_operator', 'children': ['157', '158'], 'value': '%'}, {'id': '157', 'type': 'string', 'children': [], 'value': "'Extension %s could not be loaded'"}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'extension'}, {'id': '159', 'type': 'except_clause', 'children': ['160', '164']}; {'id': '160', 'type': 'as_pattern', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '162', 'type': 'as_pattern_target', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '164', 'type': 'block', 'children': ['165']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'GlimLog'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'traceback'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'format_exc'}, {'id': '175', 'type': 'argument_list', 'children': []} | def register_extensions(self):
try:
for extension, config in self.config['extensions'].items():
extension_bstr = ''
extension_pieces = extension.split('.')
if len(extension_pieces) > 1:
extension_bstr = '.'.join(extension_pieces)
else:
extension_bstr = 'glim_extensions.%s' % extension_pieces[0]
extension_module = import_module(extension_bstr)
if extension_module:
extension_startstr = '%s.%s' % (extension_bstr, 'start')
extension_start = import_module(extension_startstr, pass_errors=True)
extension_cmdsstr = '%s.%s' % (extension_bstr, 'commands')
extension_cmds = import_module(extension_cmdsstr, pass_errors=True)
if extension_start is not None:
before = extension_start.before
before(config)
if extension_cmds is not None:
if self.commandadapter is not None:
self.commandadapter.register_extension(extension_cmds, extension_pieces[0])
else:
GlimLog.error('Extension %s could not be loaded' % extension)
except Exception as e:
GlimLog.error(traceback.format_exc()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'request'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '9', 'type': 'dictionary', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '12', 'type': 'dictionary', 'children': []}, {'id': '13', 'type': 'default_parameter', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '15', 'type': 'dictionary', 'children': []}; {'id': '16', 'type': 'default_parameter', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'base_url'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20', '22', '34', '45', '58', '86', '103', '125', '265']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'string', 'children': [], 'value': "'''\n Issues a request to Onshape\n Args:\n - method (str): HTTP method\n - path (str): Path e.g. /api/documents/:id\n - query (dict, default={}): Query params in key-value pairs\n - headers (dict, default={}): Key-value pairs of headers\n - body (dict, default={}): Body for POST request\n - base_url (str, default=None): Host, including scheme and port (if different from creds file)\n Returns:\n - requests.Response: Object containing the response from Onshape\n '''"}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'req_headers'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_make_headers'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31', '32', '33']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '34', 'type': 'if_statement', 'children': ['35', '38']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'is'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'base_url'}, {'id': '37', 'type': 'None', 'children': []}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'base_url'}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_url'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '48', 'type': 'binary_operator', 'children': ['49', '54'], 'value': '+'}, {'id': '49', 'type': 'binary_operator', 'children': ['50', '53'], 'value': '+'}; {'id': '50', 'type': 'binary_operator', 'children': ['51', '52'], 'value': '+'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'base_url'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'?'"}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'urlencode'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '58', 'type': 'if_statement', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': '_logging'}; {'id': '62', 'type': 'block', 'children': ['63', '70', '77']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'utils'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'req_headers'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'utils'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'binary_operator', 'children': ['84', '85'], 'value': '+'}; {'id': '84', 'type': 'string', 'children': [], 'value': "'request url: '"}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '89', 'type': 'conditional_expression', 'children': ['90', '96', '102'], 'value': 'if'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'dumps'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '101'], 'value': '=='}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'requests'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '112', '113', '116', '119', '122']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'headers'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'req_headers'}; {'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'body'}, {'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'allow_redirects'}, {'id': '121', 'type': 'False', 'children': []}; {'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'stream'}; {'id': '124', 'type': 'True', 'children': []}, {'id': '125', 'type': 'if_statement', 'children': ['126', '131', '219', '247']}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '130'], 'value': '=='}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'status_code'}; {'id': '130', 'type': 'integer', 'children': [], 'value': '307'}, {'id': '131', 'type': 'block', 'children': ['132', '143', '152', '170', '174', '186', '200']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'urlparse'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'subscript', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '142', 'type': 'string', 'children': [], 'value': '"Location"'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'querystring'}; {'id': '146', 'type': 'call', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'parse_qs'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '152', 'type': 'if_statement', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': '_logging'}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'utils'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'binary_operator', 'children': ['164', '165'], 'value': '+'}; {'id': '164', 'type': 'string', 'children': [], 'value': "'request redirected to: '"}, {'id': '165', 'type': 'call', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'geturl'}, {'id': '169', 'type': 'argument_list', 'children': []}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'assignment', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'new_query'}, {'id': '173', 'type': 'dictionary', 'children': []}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'new_base_url'}, {'id': '177', 'type': 'binary_operator', 'children': ['178', '183'], 'value': '+'}; {'id': '178', 'type': 'binary_operator', 'children': ['179', '182'], 'value': '+'}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '182', 'type': 'string', 'children': [], 'value': "'://'"}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'netloc'}; {'id': '186', 'type': 'for_statement', 'children': ['187', '188', '189']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'querystring'}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '195']}; {'id': '192', 'type': 'subscript', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'new_query'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '195', 'type': 'subscript', 'children': ['196', '199']}; {'id': '196', 'type': 'subscript', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'querystring'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '199', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '200', 'type': 'return_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '205']}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '205', 'type': 'argument_list', 'children': ['206', '207', '210', '213', '216']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '210', 'type': 'keyword_argument', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'new_query'}, {'id': '213', 'type': 'keyword_argument', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'headers'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '216', 'type': 'keyword_argument', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'base_url'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'new_base_url'}, {'id': '219', 'type': 'elif_clause', 'children': ['220', '227']}; {'id': '220', 'type': 'not_operator', 'children': ['221']}, {'id': '221', 'type': 'comparison_operator', 'children': ['222', '223', '226'], 'value': '<='}; {'id': '222', 'type': 'integer', 'children': [], 'value': '200'}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'status_code'}; {'id': '226', 'type': 'integer', 'children': [], 'value': '206'}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'if_statement', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': '_logging'}; {'id': '232', 'type': 'block', 'children': ['233']}, {'id': '233', 'type': 'expression_statement', 'children': ['234']}; {'id': '234', 'type': 'call', 'children': ['235', '238']}, {'id': '235', 'type': 'attribute', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'utils'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '238', 'type': 'argument_list', 'children': ['239', '244']}, {'id': '239', 'type': 'binary_operator', 'children': ['240', '241'], 'value': '+'}; {'id': '240', 'type': 'string', 'children': [], 'value': "'request failed, details: '"}, {'id': '241', 'type': 'attribute', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '244', 'type': 'keyword_argument', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'level'}; {'id': '246', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '247', 'type': 'else_clause', 'children': ['248']}; {'id': '248', 'type': 'block', 'children': ['249']}, {'id': '249', 'type': 'if_statement', 'children': ['250', '253']}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': '_logging'}, {'id': '253', 'type': 'block', 'children': ['254']}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'utils'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '259', 'type': 'argument_list', 'children': ['260']}; {'id': '260', 'type': 'binary_operator', 'children': ['261', '262'], 'value': '+'}, {'id': '261', 'type': 'string', 'children': [], 'value': "'request succeeded, details: '"}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '265', 'type': 'return_statement', 'children': ['266']} | def request(self, method, path, query={}, headers={}, body={}, base_url=None):
'''
Issues a request to Onshape
Args:
- method (str): HTTP method
- path (str): Path e.g. /api/documents/:id
- query (dict, default={}): Query params in key-value pairs
- headers (dict, default={}): Key-value pairs of headers
- body (dict, default={}): Body for POST request
- base_url (str, default=None): Host, including scheme and port (if different from creds file)
Returns:
- requests.Response: Object containing the response from Onshape
'''
req_headers = self._make_headers(method, path, query, headers)
if base_url is None:
base_url = self._url
url = base_url + path + '?' + urlencode(query)
if self._logging:
utils.log(body)
utils.log(req_headers)
utils.log('request url: ' + url)
body = json.dumps(body) if type(body) == dict else body
res = requests.request(method, url, headers=req_headers, data=body, allow_redirects=False, stream=True)
if res.status_code == 307:
location = urlparse(res.headers["Location"])
querystring = parse_qs(location.query)
if self._logging:
utils.log('request redirected to: ' + location.geturl())
new_query = {}
new_base_url = location.scheme + '://' + location.netloc
for key in querystring:
new_query[key] = querystring[key][0]
return self.request(method, location.path, query=new_query, headers=headers, base_url=new_base_url)
elif not 200 <= res.status_code <= 206:
if self._logging:
utils.log('request failed, details: ' + res.text, level=1)
else:
if self._logging:
utils.log('request succeeded, details: ' + res.text)
return res |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fix_pdb'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '14', '20', '50']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''A function to fix fatal errors in PDB files when they can be automatically fixed. At present, this only runs if\n self.strict is False. We may want a separate property for this since we may want to keep strict mode but still\n allow PDBs to be fixed.\n The only fixes at the moment are for missing chain IDs which get filled in with a valid PDB ID, if possible.'''"}; {'id': '8', 'type': 'if_statement', 'children': ['9', '12']}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'strict'}; {'id': '12', 'type': 'block', 'children': ['13']}, {'id': '13', 'type': 'return_statement', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'for_statement', 'children': ['21', '22', '25']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'if_statement', 'children': ['27', '40']}, {'id': '27', 'type': 'boolean_operator', 'children': ['28', '34'], 'value': 'or'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'string', 'children': [], 'value': "'ATOM '"}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'string', 'children': [], 'value': "'HETATM'"}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '21'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '54']}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'in'}; {'id': '52', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'chains'}; {'id': '54', 'type': 'block', 'children': ['55', '59', '84', '100', '109', '113']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'fresh_id'}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'allowed_chain_ids'}; {'id': '62', 'type': 'binary_operator', 'children': ['63', '76'], 'value': '+'}, {'id': '63', 'type': 'binary_operator', 'children': ['64', '70'], 'value': '+'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'string'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'uppercase'}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'string'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'lowercase'}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '78', 'type': 'argument_list', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '84', 'type': 'for_statement', 'children': ['85', '86', '87']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'try_statement', 'children': ['89', '97']}, {'id': '89', 'type': 'block', 'children': ['90']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'allowed_chain_ids'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'remove'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '97', 'type': 'except_clause', 'children': ['98']}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'pass_statement', 'children': []}; {'id': '100', 'type': 'if_statement', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'allowed_chain_ids'}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'fresh_id'}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'allowed_chain_ids'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'new_lines'}; {'id': '112', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '113', 'type': 'if_statement', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'fresh_id'}, {'id': '115', 'type': 'block', 'children': ['116', '173']}; {'id': '116', 'type': 'for_statement', 'children': ['117', '118', '121']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'if_statement', 'children': ['123', '143', '164']}, {'id': '123', 'type': 'boolean_operator', 'children': ['124', '138'], 'value': 'and'}; {'id': '124', 'type': 'parenthesized_expression', 'children': ['125']}, {'id': '125', 'type': 'boolean_operator', 'children': ['126', '132'], 'value': 'or'}; {'id': '126', 'type': 'call', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'string', 'children': [], 'value': "'ATOM '"}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'string', 'children': [], 'value': "'HETATM'"}; {'id': '138', 'type': 'comparison_operator', 'children': ['139', '142'], 'value': '=='}, {'id': '139', 'type': 'subscript', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '141', 'type': 'integer', 'children': [], 'value': '21'}; {'id': '142', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'new_lines'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'binary_operator', 'children': ['151', '152'], 'value': '%'}, {'id': '151', 'type': 'string', 'children': [], 'value': "'%s%s%s'"}; {'id': '152', 'type': 'tuple', 'children': ['153', '158', '159']}, {'id': '153', 'type': 'subscript', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '155', 'type': 'slice', 'children': ['156', '157']}; {'id': '156', 'type': 'colon', 'children': []}, {'id': '157', 'type': 'integer', 'children': [], 'value': '21'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'fresh_id'}, {'id': '159', 'type': 'subscript', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '161', 'type': 'slice', 'children': ['162', '163']}; {'id': '162', 'type': 'integer', 'children': [], 'value': '22'}, {'id': '163', 'type': 'colon', 'children': []}; {'id': '164', 'type': 'else_clause', 'children': ['165']}, {'id': '165', 'type': 'block', 'children': ['166']}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'new_lines'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'lines'} | def fix_pdb(self):
'''A function to fix fatal errors in PDB files when they can be automatically fixed. At present, this only runs if
self.strict is False. We may want a separate property for this since we may want to keep strict mode but still
allow PDBs to be fixed.
The only fixes at the moment are for missing chain IDs which get filled in with a valid PDB ID, if possible.'''
if self.strict:
return
chains = set()
for l in self.lines:
if l.startswith('ATOM ') or l.startswith('HETATM'):
chains.add(l[21])
if ' ' in chains:
fresh_id = None
allowed_chain_ids = list(string.uppercase) + list(string.lowercase) + map(str, range(10))
for c in chains:
try: allowed_chain_ids.remove(c)
except: pass
if allowed_chain_ids:
fresh_id = allowed_chain_ids[0]
new_lines = []
if fresh_id:
for l in self.lines:
if (l.startswith('ATOM ') or l.startswith('HETATM')) and l[21] == ' ':
new_lines.append('%s%s%s' % (l[:21], fresh_id, l[22:]))
else:
new_lines.append(l)
self.lines = new_lines |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'stripForDDG'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'keepHETATM'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'numberOfModels'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'raise_exception'}; {'id': '16', 'type': 'True', 'children': []}, {'id': '17', 'type': 'block', 'children': ['18', '20', '28', '34', '38', '42', '46', '50', '54', '58', '263', '269', '275', '281', '285', '296', '304', '319', '325', '331', '341', '348', '352', '364', '369']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'string', 'children': [], 'value': "'''Strips a PDB to ATOM lines. If keepHETATM is True then also retain HETATM lines.\n By default all PDB chains are kept. The chains parameter should be True or a list.\n In the latter case, only those chains in the list are kept.\n Unoccupied ATOM lines are discarded.\n This function also builds maps from PDB numbering to Rosetta numbering and vice versa.\n '''"}; {'id': '20', 'type': 'if_statement', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'raise_exception'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'string', 'children': [], 'value': "'This code is deprecated.'"}; {'id': '28', 'type': 'import_from_statement', 'children': ['29', '32']}, {'id': '29', 'type': 'dotted_name', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'Bio'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'PDB'}; {'id': '32', 'type': 'dotted_name', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'PDBParser'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'resmap'}, {'id': '37', 'type': 'dictionary', 'children': []}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'iresmap'}, {'id': '41', 'type': 'dictionary', 'children': []}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'newlines'}, {'id': '45', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'residx'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'oldres'}, {'id': '53', 'type': 'None', 'children': []}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'model_number'}, {'id': '57', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '58', 'type': 'for_statement', 'children': ['59', '60', '63']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '63', 'type': 'block', 'children': ['64', '77', '104']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'fieldtype'}, {'id': '67', 'type': 'call', 'children': ['68', '76']}; {'id': '68', 'type': 'attribute', 'children': ['69', '75']}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '71', 'type': 'slice', 'children': ['72', '73', '74']}; {'id': '72', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '73', 'type': 'colon', 'children': []}; {'id': '74', 'type': 'integer', 'children': [], 'value': '6'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '76', 'type': 'argument_list', 'children': []}, {'id': '77', 'type': 'if_statement', 'children': ['78', '81']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': '=='}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'fieldtype'}; {'id': '80', 'type': 'string', 'children': [], 'value': '"ENDMDL"'}, {'id': '81', 'type': 'block', 'children': ['82', '86', '95']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'augmented_assignment', 'children': ['84', '85'], 'value': '+='}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'model_number'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '86', 'type': 'if_statement', 'children': ['87', '93']}, {'id': '87', 'type': 'boolean_operator', 'children': ['88', '89'], 'value': 'and'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'numberOfModels'}, {'id': '89', 'type': 'parenthesized_expression', 'children': ['90']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': '>'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'model_number'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'numberOfModels'}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'break_statement', 'children': []}, {'id': '95', 'type': 'if_statement', 'children': ['96', '98']}; {'id': '96', 'type': 'not_operator', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'numberOfModels'}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'raise_statement', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'string', 'children': [], 'value': '"The logic here does not handle multiple models yet."'}; {'id': '104', 'type': 'if_statement', 'children': ['105', '129']}, {'id': '105', 'type': 'boolean_operator', 'children': ['106', '117'], 'value': 'and'}; {'id': '106', 'type': 'parenthesized_expression', 'children': ['107']}, {'id': '107', 'type': 'boolean_operator', 'children': ['108', '111'], 'value': 'or'}; {'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': '=='}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'fieldtype'}; {'id': '110', 'type': 'string', 'children': [], 'value': '"ATOM"'}, {'id': '111', 'type': 'parenthesized_expression', 'children': ['112']}; {'id': '112', 'type': 'boolean_operator', 'children': ['113', '116'], 'value': 'and'}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '115'], 'value': '=='}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'fieldtype'}, {'id': '115', 'type': 'string', 'children': [], 'value': '"HETATM"'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'keepHETATM'}, {'id': '117', 'type': 'parenthesized_expression', 'children': ['118']}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '128'], 'value': '!='}, {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'subscript', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '124', 'type': 'slice', 'children': ['125', '126', '127']}, {'id': '125', 'type': 'integer', 'children': [], 'value': '54'}; {'id': '126', 'type': 'colon', 'children': []}, {'id': '127', 'type': 'integer', 'children': [], 'value': '60'}; {'id': '128', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '129', 'type': 'block', 'children': ['130', '139']}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '135', 'type': 'slice', 'children': ['136', '137', '138']}; {'id': '136', 'type': 'integer', 'children': [], 'value': '21'}, {'id': '137', 'type': 'colon', 'children': []}; {'id': '138', 'type': 'integer', 'children': [], 'value': '22'}, {'id': '139', 'type': 'if_statement', 'children': ['140', '149']}; {'id': '140', 'type': 'boolean_operator', 'children': ['141', '145'], 'value': 'or'}, {'id': '141', 'type': 'parenthesized_expression', 'children': ['142']}; {'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': '=='}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'chains'}; {'id': '144', 'type': 'True', 'children': []}, {'id': '145', 'type': 'parenthesized_expression', 'children': ['146']}; {'id': '146', 'type': 'comparison_operator', 'children': ['147', '148'], 'value': 'in'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '149', 'type': 'block', 'children': ['150', '159', '168', '217', '224', '248', '256']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '153', 'type': 'subscript', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '155', 'type': 'slice', 'children': ['156', '157', '158']}; {'id': '156', 'type': 'integer', 'children': [], 'value': '21'}, {'id': '157', 'type': 'colon', 'children': []}; {'id': '158', 'type': 'integer', 'children': [], 'value': '27'}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'assignment', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'iCode'}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '164', 'type': 'slice', 'children': ['165', '166', '167']}, {'id': '165', 'type': 'integer', 'children': [], 'value': '26'}; {'id': '166', 'type': 'colon', 'children': []}, {'id': '167', 'type': 'integer', 'children': [], 'value': '27'}; {'id': '168', 'type': 'if_statement', 'children': ['169', '172']}, {'id': '169', 'type': 'comparison_operator', 'children': ['170', '171'], 'value': '!='}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'oldres'}; {'id': '172', 'type': 'block', 'children': ['173', '177', '185', '193', '201', '207', '213']}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'augmented_assignment', 'children': ['175', '176'], 'value': '+='}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'residx'}; {'id': '176', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'newnumbering'}; {'id': '180', 'type': 'binary_operator', 'children': ['181', '182'], 'value': '%'}, {'id': '181', 'type': 'string', 'children': [], 'value': '"%s%4.i "'}; {'id': '182', 'type': 'tuple', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'residx'}, {'id': '185', 'type': 'assert_statement', 'children': ['186']}; {'id': '186', 'type': 'parenthesized_expression', 'children': ['187']}, {'id': '187', 'type': 'comparison_operator', 'children': ['188', '192'], 'value': '=='}; {'id': '188', 'type': 'call', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '190', 'type': 'argument_list', 'children': ['191']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'newnumbering'}; {'id': '192', 'type': 'integer', 'children': [], 'value': '6'}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '196', 'type': 'binary_operator', 'children': ['197', '200'], 'value': '+'}, {'id': '197', 'type': 'binary_operator', 'children': ['198', '199'], 'value': '+'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'fieldtype'}, {'id': '199', 'type': 'string', 'children': [], 'value': '"-"'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'assignment', 'children': ['203', '206']}, {'id': '203', 'type': 'subscript', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'resmap'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'residx'}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'iresmap'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'residx'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'oldres'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'assignment', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'oldlength'}; {'id': '220', 'type': 'call', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'assignment', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '227', 'type': 'binary_operator', 'children': ['228', '229'], 'value': '%'}; {'id': '228', 'type': 'string', 'children': [], 'value': '"%s%4.i %s"'}, {'id': '229', 'type': 'tuple', 'children': ['230', '236', '243']}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '232', 'type': 'slice', 'children': ['233', '234', '235']}, {'id': '233', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '234', 'type': 'colon', 'children': []}, {'id': '235', 'type': 'integer', 'children': [], 'value': '22'}; {'id': '236', 'type': 'subscript', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'resmap'}; {'id': '238', 'type': 'binary_operator', 'children': ['239', '242'], 'value': '+'}, {'id': '239', 'type': 'binary_operator', 'children': ['240', '241'], 'value': '+'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'fieldtype'}, {'id': '241', 'type': 'string', 'children': [], 'value': '"-"'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '243', 'type': 'subscript', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '245', 'type': 'slice', 'children': ['246', '247']}; {'id': '246', 'type': 'integer', 'children': [], 'value': '27'}, {'id': '247', 'type': 'colon', 'children': []}; {'id': '248', 'type': 'assert_statement', 'children': ['249']}, {'id': '249', 'type': 'parenthesized_expression', 'children': ['250']}; {'id': '250', 'type': 'comparison_operator', 'children': ['251', '255'], 'value': '=='}, {'id': '251', 'type': 'call', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'oldlength'}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'call', 'children': ['258', '261']}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'newlines'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '261', 'type': 'argument_list', 'children': ['262']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'assignment', 'children': ['265', '268']}, {'id': '265', 'type': 'attribute', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'newlines'}, {'id': '269', 'type': 'expression_statement', 'children': ['270']}; {'id': '270', 'type': 'assignment', 'children': ['271', '274']}, {'id': '271', 'type': 'attribute', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'ddGresmap'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'resmap'}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'assignment', 'children': ['277', '280']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'ddGiresmap'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'iresmap'}, {'id': '281', 'type': 'expression_statement', 'children': ['282']}; {'id': '282', 'type': 'assignment', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'tmpfile'}; {'id': '284', 'type': 'string', 'children': [], 'value': '"/tmp/ddgtemp.pdb"'}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'assignment', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '290', 'type': 'boolean_operator', 'children': ['291', '294'], 'value': 'or'}, {'id': '291', 'type': 'attribute', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '294', 'type': 'list', 'children': ['295'], 'value': '["\\n"]'}, {'id': '295', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '296', 'type': 'expression_statement', 'children': ['297']}, {'id': '297', 'type': 'assignment', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'F'}, {'id': '299', 'type': 'call', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '301', 'type': 'argument_list', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'tmpfile'}, {'id': '303', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '304', 'type': 'expression_statement', 'children': ['305']}, {'id': '305', 'type': 'call', 'children': ['306', '309']}; {'id': '306', 'type': 'attribute', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'F'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '309', 'type': 'argument_list', 'children': ['310']}; {'id': '310', 'type': 'call', 'children': ['311', '314']}, {'id': '311', 'type': 'attribute', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'string'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '314', 'type': 'argument_list', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '318', 'type': 'string', 'children': [], 'value': '"\\n"'}, {'id': '319', 'type': 'expression_statement', 'children': ['320']}; {'id': '320', 'type': 'call', 'children': ['321', '324']}, {'id': '321', 'type': 'attribute', 'children': ['322', '323']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'F'}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '324', 'type': 'argument_list', 'children': []}, {'id': '325', 'type': 'expression_statement', 'children': ['326']}; {'id': '326', 'type': 'assignment', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'parser'}; {'id': '328', 'type': 'call', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'PDBParser'}; {'id': '330', 'type': 'argument_list', 'children': []}, {'id': '331', 'type': 'expression_statement', 'children': ['332']}; {'id': '332', 'type': 'assignment', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'structure'}; {'id': '334', 'type': 'call', 'children': ['335', '338']}, {'id': '335', 'type': 'attribute', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'parser'}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'get_structure'}; {'id': '338', 'type': 'argument_list', 'children': ['339', '340']}, {'id': '339', 'type': 'string', 'children': [], 'value': "'tmp'"}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'tmpfile'}, {'id': '341', 'type': 'expression_statement', 'children': ['342']}; {'id': '342', 'type': 'call', 'children': ['343', '346']}, {'id': '343', 'type': 'attribute', 'children': ['344', '345']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '346', 'type': 'argument_list', 'children': ['347']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'tmpfile'}; {'id': '348', 'type': 'expression_statement', 'children': ['349']}, {'id': '349', 'type': 'assignment', 'children': ['350', '351']}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '351', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '352', 'type': 'for_statement', 'children': ['353', '354', '359']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'residue'}; {'id': '354', 'type': 'call', 'children': ['355', '358']}, {'id': '355', 'type': 'attribute', 'children': ['356', '357']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'structure'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'get_residues'}; {'id': '358', 'type': 'argument_list', 'children': []}, {'id': '359', 'type': 'block', 'children': ['360']}; {'id': '360', 'type': 'expression_statement', 'children': ['361']}, {'id': '361', 'type': 'augmented_assignment', 'children': ['362', '363'], 'value': '+='}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '363', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '364', 'type': 'assert_statement', 'children': ['365']}, {'id': '365', 'type': 'parenthesized_expression', 'children': ['366']}; {'id': '366', 'type': 'comparison_operator', 'children': ['367', '368'], 'value': '=='}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'residx'}, {'id': '369', 'type': 'assert_statement', 'children': ['370']}; {'id': '370', 'type': 'parenthesized_expression', 'children': ['371']}, {'id': '371', 'type': 'comparison_operator', 'children': ['372', '376'], 'value': '=='}; {'id': '372', 'type': 'call', 'children': ['373', '374']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '374', 'type': 'argument_list', 'children': ['375']}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'resmap'}; {'id': '376', 'type': 'call', 'children': ['377', '378']}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '378', 'type': 'argument_list', 'children': ['379']}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'iresmap'} | def stripForDDG(self, chains = True, keepHETATM = False, numberOfModels = None, raise_exception = True):
'''Strips a PDB to ATOM lines. If keepHETATM is True then also retain HETATM lines.
By default all PDB chains are kept. The chains parameter should be True or a list.
In the latter case, only those chains in the list are kept.
Unoccupied ATOM lines are discarded.
This function also builds maps from PDB numbering to Rosetta numbering and vice versa.
'''
if raise_exception:
raise Exception('This code is deprecated.')
from Bio.PDB import PDBParser
resmap = {}
iresmap = {}
newlines = []
residx = 0
oldres = None
model_number = 1
for line in self.lines:
fieldtype = line[0:6].strip()
if fieldtype == "ENDMDL":
model_number += 1
if numberOfModels and (model_number > numberOfModels):
break
if not numberOfModels:
raise Exception("The logic here does not handle multiple models yet.")
if (fieldtype == "ATOM" or (fieldtype == "HETATM" and keepHETATM)) and (float(line[54:60]) != 0):
chain = line[21:22]
if (chains == True) or (chain in chains):
resid = line[21:27]
iCode = line[26:27]
if resid != oldres:
residx += 1
newnumbering = "%s%4.i " % (chain, residx)
assert(len(newnumbering) == 6)
id = fieldtype + "-" + resid
resmap[id] = residx
iresmap[residx] = id
oldres = resid
oldlength = len(line)
line = "%s%4.i %s" % (line[0:22], resmap[fieldtype + "-" + resid], line[27:])
assert(len(line) == oldlength)
newlines.append(line)
self.lines = newlines
self.ddGresmap = resmap
self.ddGiresmap = iresmap
tmpfile = "/tmp/ddgtemp.pdb"
self.lines = self.lines or ["\n"]
F = open(tmpfile,'w')
F.write(string.join(self.lines, "\n"))
F.close()
parser=PDBParser()
structure=parser.get_structure('tmp', tmpfile)
os.remove(tmpfile)
count = 0
for residue in structure.get_residues():
count += 1
assert(count == residx)
assert(len(resmap) == len(iresmap)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'neighbors2'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'distance'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'chain_residue'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'atom'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'resid_list'}; {'id': '12', 'type': 'None', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14', '16', '76', '85', '133', '137', '218']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'''this one is more precise since it uses the chain identifier also'''"}; {'id': '16', 'type': 'if_statement', 'children': ['17', '20', '43']}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': '=='}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'atom'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '24', 'type': 'list_comprehension', 'children': ['25', '26', '34']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '26', 'type': 'for_in_clause', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'atomlines'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'resid_list'}; {'id': '34', 'type': 'if_clause', 'children': ['35']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '42'], 'value': 'in'}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '38', 'type': 'slice', 'children': ['39', '40', '41']}, {'id': '39', 'type': 'integer', 'children': [], 'value': '17'}; {'id': '40', 'type': 'colon', 'children': []}, {'id': '41', 'type': 'integer', 'children': [], 'value': '20'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'allowed_PDB_residues_types'}, {'id': '43', 'type': 'else_clause', 'children': ['44']}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '48', 'type': 'list_comprehension', 'children': ['49', '50', '58']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '50', 'type': 'for_in_clause', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'atomlines'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'resid_list'}; {'id': '58', 'type': 'if_clause', 'children': ['59']}, {'id': '59', 'type': 'boolean_operator', 'children': ['60', '68'], 'value': 'and'}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '67'], 'value': 'in'}, {'id': '61', 'type': 'subscript', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '63', 'type': 'slice', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'integer', 'children': [], 'value': '17'}, {'id': '65', 'type': 'colon', 'children': []}; {'id': '66', 'type': 'integer', 'children': [], 'value': '20'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'allowed_PDB_residues_types'}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '75'], 'value': '=='}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '71', 'type': 'slice', 'children': ['72', '73', '74']}; {'id': '72', 'type': 'integer', 'children': [], 'value': '12'}, {'id': '73', 'type': 'colon', 'children': []}; {'id': '74', 'type': 'integer', 'children': [], 'value': '16'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'atom'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'shash'}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'spatialhash'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'SpatialHash'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'distance'}, {'id': '85', 'type': 'for_statement', 'children': ['86', '87', '88']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '88', 'type': 'block', 'children': ['89', '120']}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '92', 'type': 'tuple', 'children': ['93', '102', '111']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'subscript', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '98', 'type': 'slice', 'children': ['99', '100', '101']}, {'id': '99', 'type': 'integer', 'children': [], 'value': '30'}; {'id': '100', 'type': 'colon', 'children': []}, {'id': '101', 'type': 'integer', 'children': [], 'value': '38'}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'subscript', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '107', 'type': 'slice', 'children': ['108', '109', '110']}; {'id': '108', 'type': 'integer', 'children': [], 'value': '38'}, {'id': '109', 'type': 'colon', 'children': []}; {'id': '110', 'type': 'integer', 'children': [], 'value': '46'}, {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '116', 'type': 'slice', 'children': ['117', '118', '119']}, {'id': '117', 'type': 'integer', 'children': [], 'value': '46'}; {'id': '118', 'type': 'colon', 'children': []}, {'id': '119', 'type': 'integer', 'children': [], 'value': '54'}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'shash'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'insert'}, {'id': '125', 'type': 'argument_list', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'pos'}, {'id': '127', 'type': 'subscript', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '129', 'type': 'slice', 'children': ['130', '131', '132']}; {'id': '130', 'type': 'integer', 'children': [], 'value': '21'}, {'id': '131', 'type': 'colon', 'children': []}; {'id': '132', 'type': 'integer', 'children': [], 'value': '26'}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'neighbor_list'}; {'id': '136', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '137', 'type': 'for_statement', 'children': ['138', '139', '140']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '140', 'type': 'block', 'children': ['141', '150']}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'resid'}; {'id': '144', 'type': 'subscript', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '146', 'type': 'slice', 'children': ['147', '148', '149']}, {'id': '147', 'type': 'integer', 'children': [], 'value': '21'}; {'id': '148', 'type': 'colon', 'children': []}, {'id': '149', 'type': 'integer', 'children': [], 'value': '26'}; {'id': '150', 'type': 'if_statement', 'children': ['151', '154']}, {'id': '151', 'type': 'comparison_operator', 'children': ['152', '153'], 'value': '=='}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'chain_residue'}; {'id': '154', 'type': 'block', 'children': ['155', '186', '212']}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '158', 'type': 'tuple', 'children': ['159', '168', '177']}, {'id': '159', 'type': 'call', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '164', 'type': 'slice', 'children': ['165', '166', '167']}, {'id': '165', 'type': 'integer', 'children': [], 'value': '30'}; {'id': '166', 'type': 'colon', 'children': []}, {'id': '167', 'type': 'integer', 'children': [], 'value': '38'}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'subscript', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '173', 'type': 'slice', 'children': ['174', '175', '176']}; {'id': '174', 'type': 'integer', 'children': [], 'value': '38'}, {'id': '175', 'type': 'colon', 'children': []}; {'id': '176', 'type': 'integer', 'children': [], 'value': '46'}, {'id': '177', 'type': 'call', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'subscript', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '182', 'type': 'slice', 'children': ['183', '184', '185']}, {'id': '183', 'type': 'integer', 'children': [], 'value': '46'}; {'id': '184', 'type': 'colon', 'children': []}, {'id': '185', 'type': 'integer', 'children': [], 'value': '54'}; {'id': '186', 'type': 'for_statement', 'children': ['187', '188', '195']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '188', 'type': 'call', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'shash'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'nearby'}; {'id': '192', 'type': 'argument_list', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'pos'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'distance'}, {'id': '195', 'type': 'block', 'children': ['196']}; {'id': '196', 'type': 'if_statement', 'children': ['197', '202']}, {'id': '197', 'type': 'comparison_operator', 'children': ['198', '201'], 'value': 'not'}; {'id': '198', 'type': 'subscript', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '200', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'neighbor_list'}; {'id': '202', 'type': 'block', 'children': ['203']}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'neighbor_list'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '208', 'type': 'argument_list', 'children': ['209']}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '211', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '212', 'type': 'expression_statement', 'children': ['213']}, {'id': '213', 'type': 'call', 'children': ['214', '217']}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'neighbor_list'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '217', 'type': 'argument_list', 'children': []}; {'id': '218', 'type': 'return_statement', 'children': ['219']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'neighbor_list'} | def neighbors2(self, distance, chain_residue, atom = None, resid_list = None):
'''this one is more precise since it uses the chain identifier also'''
if atom == None:
lines = [line for line in self.atomlines(resid_list) if line[17:20] in allowed_PDB_residues_types]
else:
lines = [line for line in self.atomlines(resid_list) if line[17:20] in allowed_PDB_residues_types and line[12:16] == atom]
shash = spatialhash.SpatialHash(distance)
for line in lines:
pos = (float(line[30:38]), float(line[38:46]), float(line[46:54]))
shash.insert(pos, line[21:26])
neighbor_list = []
for line in lines:
resid = line[21:26]
if resid == chain_residue:
pos = (float(line[30:38]), float(line[38:46]), float(line[46:54]))
for data in shash.nearby(pos, distance):
if data[1] not in neighbor_list:
neighbor_list.append(data[1])
neighbor_list.sort()
return neighbor_list |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '26']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_document'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11', '14', '17', '20', '23']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'item_uri'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'metadata'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'docurl'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'displaydoc'}, {'id': '19', 'type': 'False', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'preferName'}; {'id': '22', 'type': 'False', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'contrib_id'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'block', 'children': ['27', '52', '70', '79', '88', '133', '186', '193', '211', '219']}, {'id': '27', 'type': 'if_statement', 'children': ['28', '34', '46']}; {'id': '28', 'type': 'boolean_operator', 'children': ['29', '31'], 'value': 'and'}, {'id': '29', 'type': 'not_operator', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'preferName'}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'is'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '33', 'type': 'None', 'children': []}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'docid'}; {'id': '38', 'type': 'call', 'children': ['39', '44']}, {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '46', 'type': 'else_clause', 'children': ['47']}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'docid'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '55', 'type': 'dictionary', 'children': ['56']}; {'id': '56', 'type': 'pair', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': '"metadata"'}; {'id': '58', 'type': 'dictionary', 'children': ['59', '64', '67']}, {'id': '59', 'type': 'pair', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': '"@context"'}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '64', 'type': 'pair', 'children': ['65', '66']}, {'id': '65', 'type': 'string', 'children': [], 'value': '"@type"'}; {'id': '66', 'type': 'string', 'children': [], 'value': '"foaf:Document"'}, {'id': '67', 'type': 'pair', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': '"dcterms:identifier"'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'docid'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '77']}; {'id': '72', 'type': 'attribute', 'children': ['73', '76']}, {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '75', 'type': 'string', 'children': [], 'value': '"metadata"'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'metadata'}, {'id': '79', 'type': 'if_statement', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'contrib_id'}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '87']}; {'id': '84', 'type': 'subscript', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'docmeta'}; {'id': '86', 'type': 'string', 'children': [], 'value': "'contribution_id'"}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'contrib_id'}; {'id': '88', 'type': 'if_statement', 'children': ['89', '92', '99', '115', '126']}, {'id': '89', 'type': 'comparison_operator', 'children': ['90', '91'], 'value': 'is'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '91', 'type': 'None', 'children': []}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '98']}, {'id': '95', 'type': 'subscript', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '97', 'type': 'string', 'children': [], 'value': "'document_content'"}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '99', 'type': 'elif_clause', 'children': ['100', '103']}; {'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': 'is'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'docurl'}; {'id': '102', 'type': 'None', 'children': []}, {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '111']}; {'id': '106', 'type': 'subscript', 'children': ['107', '110']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '109', 'type': 'string', 'children': [], 'value': '"metadata"'}; {'id': '110', 'type': 'string', 'children': [], 'value': '"dcterms:source"'}, {'id': '111', 'type': 'dictionary', 'children': ['112']}; {'id': '112', 'type': 'pair', 'children': ['113', '114']}, {'id': '113', 'type': 'string', 'children': [], 'value': '"@id"'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'docurl'}, {'id': '115', 'type': 'elif_clause', 'children': ['116', '119']}; {'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': 'is'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '118', 'type': 'None', 'children': []}, {'id': '119', 'type': 'block', 'children': ['120']}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'assignment', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '123', 'type': 'subscript', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '125', 'type': 'string', 'children': [], 'value': "'metadata'"}; {'id': '126', 'type': 'else_clause', 'children': ['127']}, {'id': '127', 'type': 'block', 'children': ['128']}; {'id': '128', 'type': 'raise_statement', 'children': ['129']}, {'id': '129', 'type': 'call', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'string', 'children': [], 'value': '"One of content, docurl or file must be specified in add_document"'}, {'id': '133', 'type': 'if_statement', 'children': ['134', '137', '164']}; {'id': '134', 'type': 'comparison_operator', 'children': ['135', '136'], 'value': 'is'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '136', 'type': 'None', 'children': []}, {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'assignment', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '141', 'type': 'call', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'api_request'}, {'id': '145', 'type': 'argument_list', 'children': ['146', '147', '150', '161']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'item_uri'}, {'id': '147', 'type': 'keyword_argument', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '149', 'type': 'string', 'children': [], 'value': "'POST'"}; {'id': '150', 'type': 'keyword_argument', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '152', 'type': 'dictionary', 'children': ['153']}, {'id': '153', 'type': 'pair', 'children': ['154', '155']}; {'id': '154', 'type': 'string', 'children': [], 'value': "'metadata'"}, {'id': '155', 'type': 'call', 'children': ['156', '159']}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'dumps'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'docmeta'}, {'id': '161', 'type': 'keyword_argument', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '164', 'type': 'else_clause', 'children': ['165']}, {'id': '165', 'type': 'block', 'children': ['166']}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'api_request'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175', '178']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'item_uri'}, {'id': '175', 'type': 'keyword_argument', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '177', 'type': 'string', 'children': [], 'value': "'POST'"}; {'id': '178', 'type': 'keyword_argument', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'dumps'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'docmeta'}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': '__check_success'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '193', 'type': 'if_statement', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'displaydoc'}, {'id': '195', 'type': 'block', 'children': ['196', '203']}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'assignment', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'itemmeta'}, {'id': '199', 'type': 'dictionary', 'children': ['200']}; {'id': '200', 'type': 'pair', 'children': ['201', '202']}, {'id': '201', 'type': 'string', 'children': [], 'value': '"http://alveo.edu.org/vocabulary/display_document"'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'docid'}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'modify_item'}; {'id': '208', 'type': 'argument_list', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'item_uri'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'itemmeta'}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'assignment', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'doc_uri'}; {'id': '214', 'type': 'binary_operator', 'children': ['215', '218'], 'value': '+'}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '217'], 'value': '+'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'item_uri'}, {'id': '217', 'type': 'string', 'children': [], 'value': '"/document/"'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '219', 'type': 'return_statement', 'children': ['220']} | def add_document(self, item_uri, name, metadata,
content=None, docurl=None, file=None,
displaydoc=False, preferName=False,
contrib_id=None):
if not preferName and file is not None:
docid = os.path.basename(file)
else:
docid = name
docmeta = {"metadata": {"@context": self.context,
"@type": "foaf:Document",
"dcterms:identifier": docid,
}
}
docmeta["metadata"].update(metadata)
if contrib_id:
docmeta['contribution_id'] = contrib_id
if content is not None:
docmeta['document_content'] = content
elif docurl is not None:
docmeta["metadata"]["dcterms:source"] = { "@id": docurl }
elif file is not None:
docmeta = docmeta['metadata']
else:
raise Exception("One of content, docurl or file must be specified in add_document")
if file is not None:
result = self.api_request(item_uri, method='POST', data={'metadata': json.dumps(docmeta)}, file=file)
else:
result = self.api_request(item_uri, method='POST', data=json.dumps(docmeta))
self.__check_success(result)
if displaydoc:
itemmeta = {"http://alveo.edu.org/vocabulary/display_document": docid}
self.modify_item(item_uri, itemmeta)
doc_uri = item_uri + "/document/" + name
return doc_uri |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_agents'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'addr'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'include_manager'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '17', '32', '71', '91', '104']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'''Get agents in the environment.\n :param bool addr: If ``True``, returns only addresses of the agents.\n :param agent_cls:\n Optional, if specified returns only agents belonging to that\n particular class.\n :param bool include_manager:\n If `True``` includes the environment's manager, i.e. the agent in\n the address ``tcp://environment-host:port/0``, to the returned\n list if the environment has attribute :attr:`manager`. If\n environment does not have :attr:`manager`, then the parameter does\n nothing.\n :returns: A list of agents in the environment.\n :rtype: list\n .. note::\n By design, manager agents are excluded from the returned lists of\n agents by default.\n '''"}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'agents'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '31']}; {'id': '24', 'type': 'attribute', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'agents'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'if_statement', 'children': ['33', '44']}, {'id': '33', 'type': 'boolean_operator', 'children': ['34', '39'], 'value': 'and'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'manager'"}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '43'], 'value': 'is'}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'manager'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'if_statement', 'children': ['46', '48']}; {'id': '46', 'type': 'not_operator', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'include_manager'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'agents'}; {'id': '52', 'type': 'list_comprehension', 'children': ['53', '54', '57']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'agents'}, {'id': '57', 'type': 'if_clause', 'children': ['58']}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '70'], 'value': '!='}, {'id': '59', 'type': 'subscript', 'children': ['60', '69']}; {'id': '60', 'type': 'call', 'children': ['61', '66']}, {'id': '61', 'type': 'attribute', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'addr'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'rsplit'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '68']}, {'id': '67', 'type': 'string', 'children': [], 'value': "'/'"}; {'id': '68', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '70', 'type': 'string', 'children': [], 'value': "'0'"}, {'id': '71', 'type': 'if_statement', 'children': ['72', '75']}; {'id': '72', 'type': 'comparison_operator', 'children': ['73', '74'], 'value': 'is'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}; {'id': '74', 'type': 'None', 'children': []}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'agents'}, {'id': '79', 'type': 'list_comprehension', 'children': ['80', '81', '84']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '81', 'type': 'for_in_clause', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'agents'}; {'id': '84', 'type': 'if_clause', 'children': ['85']}, {'id': '85', 'type': 'comparison_operator', 'children': ['86', '90'], 'value': 'is'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'agent_cls'}, {'id': '91', 'type': 'if_statement', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'addr'}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'agents'}, {'id': '97', 'type': 'list_comprehension', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'agent'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'addr'}, {'id': '101', 'type': 'for_in_clause', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'agent'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'agents'}; {'id': '104', 'type': 'return_statement', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'agents'} | def get_agents(self, addr=True, agent_cls=None, include_manager=False):
'''Get agents in the environment.
:param bool addr: If ``True``, returns only addresses of the agents.
:param agent_cls:
Optional, if specified returns only agents belonging to that
particular class.
:param bool include_manager:
If `True``` includes the environment's manager, i.e. the agent in
the address ``tcp://environment-host:port/0``, to the returned
list if the environment has attribute :attr:`manager`. If
environment does not have :attr:`manager`, then the parameter does
nothing.
:returns: A list of agents in the environment.
:rtype: list
.. note::
By design, manager agents are excluded from the returned lists of
agents by default.
'''
agents = list(self.agents.dict.values())
if hasattr(self, 'manager') and self.manager is not None:
if not include_manager:
agents = [a for a in agents if a.addr.rsplit('/', 1)[1] != '0']
if agent_cls is not None:
agents = [a for a in agents if type(a) is agent_cls]
if addr:
agents = [agent.addr for agent in agents]
return agents |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'tee'}, {'id': '3', 'type': 'parameters', 'children': ['4', '6']}; {'id': '4', 'type': 'list_splat_pattern', 'children': ['5']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'popenargs'}; {'id': '6', 'type': 'dictionary_splat_pattern', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '8', 'type': 'block', 'children': ['9', '16', '38', '46', '73', '167', '181', '195']}, {'id': '9', 'type': 'import_statement', 'children': ['10', '12', '14']}; {'id': '10', 'type': 'dotted_name', 'children': ['11']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '12', 'type': 'dotted_name', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'select'}; {'id': '14', 'type': 'dotted_name', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'process'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'Popen'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '29', '34', '36']}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'PIPE'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'PIPE'}; {'id': '34', 'type': 'list_splat', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'popenargs'}; {'id': '36', 'type': 'dictionary_splat', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '43']}; {'id': '40', 'type': 'pattern_list', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '43', 'type': 'expression_list', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': "''"}, {'id': '45', 'type': 'string', 'children': [], 'value': "''"}; {'id': '46', 'type': 'function_definition', 'children': ['47', '48', '51']}, {'id': '47', 'type': 'function_name', 'children': [], 'value': 'read_stream'}; {'id': '48', 'type': 'parameters', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'input_callback'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'output_stream'}, {'id': '51', 'type': 'block', 'children': ['52', '58', '65', '71']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'input_callback'}, {'id': '57', 'type': 'argument_list', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'output_stream'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'output_stream'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'flush'}; {'id': '70', 'type': 'argument_list', 'children': []}, {'id': '71', 'type': 'return_statement', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'read'}, {'id': '73', 'type': 'while_statement', 'children': ['74', '81']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '80'], 'value': 'is'}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'poll'}, {'id': '79', 'type': 'argument_list', 'children': []}; {'id': '80', 'type': 'None', 'children': []}, {'id': '81', 'type': 'block', 'children': ['82', '100', '113']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'watch'}, {'id': '85', 'type': 'expression_list', 'children': ['86', '93']}; {'id': '86', 'type': 'call', 'children': ['87', '92']}, {'id': '87', 'type': 'attribute', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'fileno'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'call', 'children': ['94', '99']}; {'id': '94', 'type': 'attribute', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'process'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'fileno'}, {'id': '99', 'type': 'argument_list', 'children': []}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'ready'}, {'id': '103', 'type': 'subscript', 'children': ['104', '112']}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'select'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'select'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110', '111']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'watch'}; {'id': '110', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '111', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '112', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '113', 'type': 'for_statement', 'children': ['114', '115', '116']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'fd'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'ready'}; {'id': '116', 'type': 'block', 'children': ['117', '142']}, {'id': '117', 'type': 'if_statement', 'children': ['118', '127']}; {'id': '118', 'type': 'comparison_operator', 'children': ['119', '120'], 'value': '=='}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'fd'}; {'id': '120', 'type': 'call', 'children': ['121', '126']}, {'id': '121', 'type': 'attribute', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'fileno'}; {'id': '126', 'type': 'argument_list', 'children': []}, {'id': '127', 'type': 'block', 'children': ['128']}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}, {'id': '129', 'type': 'augmented_assignment', 'children': ['130', '131'], 'value': '+='}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '131', 'type': 'call', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'read_stream'}, {'id': '133', 'type': 'argument_list', 'children': ['134', '139']}; {'id': '134', 'type': 'attribute', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'process'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'readline'}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '152']}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '145'], 'value': '=='}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'fd'}, {'id': '145', 'type': 'call', 'children': ['146', '151']}; {'id': '146', 'type': 'attribute', 'children': ['147', '150']}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'process'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'fileno'}, {'id': '151', 'type': 'argument_list', 'children': []}; {'id': '152', 'type': 'block', 'children': ['153']}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'augmented_assignment', 'children': ['155', '156'], 'value': '+='}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'read_stream'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '164']}, {'id': '159', 'type': 'attribute', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'augmented_assignment', 'children': ['169', '170'], 'value': '+='}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '170', 'type': 'call', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'read_stream'}; {'id': '172', 'type': 'argument_list', 'children': ['173', '178']}, {'id': '173', 'type': 'attribute', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'augmented_assignment', 'children': ['183', '184'], 'value': '+='}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '184', 'type': 'call', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'read_stream'}; {'id': '186', 'type': 'argument_list', 'children': ['187', '192']}, {'id': '187', 'type': 'attribute', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'process'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '195', 'type': 'return_statement', 'children': ['196']}; {'id': '196', 'type': 'expression_list', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'stdout'} | def tee(*popenargs, **kwargs):
import subprocess, select, sys
process = subprocess.Popen(
stdout=subprocess.PIPE, stderr=subprocess.PIPE,
*popenargs, **kwargs)
stdout, stderr = '', ''
def read_stream(input_callback, output_stream):
read = input_callback()
output_stream.write(read)
output_stream.flush()
return read
while process.poll() is None:
watch = process.stdout.fileno(), process.stderr.fileno()
ready = select.select(watch, [], [])[0]
for fd in ready:
if fd == process.stdout.fileno():
stdout += read_stream(process.stdout.readline, sys.stdout)
if fd == process.stderr.fileno():
stderr += read_stream(process.stderr.readline, sys.stderr)
stdout += read_stream(process.stdout.read, sys.stdout)
stderr += read_stream(process.stderr.read, sys.stderr)
return stdout, stderr |
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if isinstance(obj, uuid.UUID):
return str(obj)
if hasattr(obj, 'isoformat'):
return obj.isoformat()
if isinstance(obj, (bytes, bytearray, memoryview)):
return base64.b64encode(obj).decode('ASCII')
raise TypeError('{!r} is not JSON serializable'.format(obj)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'normalize_datum'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '6', 'type': 'block', 'children': ['7', '14', '25', '41', '55', '70', '85', '96', '120', '156']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'is'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '14', 'type': 'if_statement', 'children': ['15', '22']}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'PACKABLE_TYPES'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'return_statement', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '25', 'type': 'if_statement', 'children': ['26', '33']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'UUID'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '41', 'type': 'if_statement', 'children': ['42', '47']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'bytearray'}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'bytes'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '55', 'type': 'if_statement', 'children': ['56', '61']}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'memoryview'}, {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'tobytes'}, {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'if_statement', 'children': ['71', '76']}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '73', 'type': 'argument_list', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '75', 'type': 'string', 'children': [], 'value': "'isoformat'"}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'isoformat'}; {'id': '84', 'type': 'argument_list', 'children': []}, {'id': '85', 'type': 'if_statement', 'children': ['86', '93']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '88', 'type': 'argument_list', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '90', 'type': 'tuple', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'bytes'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'return_statement', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '108']}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '99', 'type': 'argument_list', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '101', 'type': 'tuple', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'Sequence'}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'collections'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'Set'}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'return_statement', 'children': ['110']}; {'id': '110', 'type': 'list_comprehension', 'children': ['111', '117']}, {'id': '111', 'type': 'call', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'normalize_datum'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '117', 'type': 'for_in_clause', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '120', 'type': 'if_statement', 'children': ['121', '128']}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '123', 'type': 'argument_list', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'datum'}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'collections'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'Mapping'}; {'id': '128', 'type': 'block', 'children': ['129', '133', '154']}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '132', 'type': 'dictionary', 'children': []}, {'id': '133', 'type': 'for_statement', 'children': ['134', '137', '142']}; {'id': '134', 'type': 'pattern_list', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '141', 'type': 'argument_list', 'children': []}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '148']}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '148', 'type': 'call', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'normalize_datum'}; {'id': '152', 'type': 'argument_list', 'children': ['153']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '154', 'type': 'return_statement', 'children': ['155']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '156', 'type': 'raise_statement', 'children': ['157']}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'string', 'children': [], 'value': "'{} is not msgpackable'"}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'attribute', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'datum'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': '__name__'} | def normalize_datum(self, datum):
if datum is None:
return datum
if isinstance(datum, self.PACKABLE_TYPES):
return datum
if isinstance(datum, uuid.UUID):
datum = str(datum)
if isinstance(datum, bytearray):
datum = bytes(datum)
if isinstance(datum, memoryview):
datum = datum.tobytes()
if hasattr(datum, 'isoformat'):
datum = datum.isoformat()
if isinstance(datum, (bytes, str)):
return datum
if isinstance(datum, (collections.Sequence, collections.Set)):
return [self.normalize_datum(item) for item in datum]
if isinstance(datum, collections.Mapping):
out = {}
for k, v in datum.items():
out[k] = self.normalize_datum(v)
return out
raise TypeError(
'{} is not msgpackable'.format(datum.__class__.__name__)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'redirect'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '7', 'type': 'block', 'children': ['8', '12', '128']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '_endpoint'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'if_statement', 'children': ['13', '20', '73']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '20', 'type': 'block', 'children': ['21', '25']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': '_endpoint'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '25', 'type': 'if_statement', 'children': ['26', '29', '35']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'in'}, {'id': '27', 'type': 'string', 'children': [], 'value': '"/"'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'return_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'f_redirect'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '35', 'type': 'else_clause', 'children': ['36']}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'for_statement', 'children': ['38', '39', '48']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '39', 'type': 'call', 'children': ['40', '47']}; {'id': '40', 'type': 'attribute', 'children': ['41', '46']}, {'id': '41', 'type': 'attribute', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'Mocha'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_app'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'url_map'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'iter_rules'}, {'id': '47', 'type': 'argument_list', 'children': []}; {'id': '48', 'type': 'block', 'children': ['49', '53']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': '_endpoint'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '53', 'type': 'if_statement', 'children': ['54', '65']}; {'id': '54', 'type': 'boolean_operator', 'children': ['55', '60'], 'value': 'and'}, {'id': '55', 'type': 'comparison_operator', 'children': ['56', '57'], 'value': 'in'}; {'id': '56', 'type': 'string', 'children': [], 'value': "'GET'"}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'methods'}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': 'in'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'endpoint'}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '65', 'type': 'block', 'children': ['66', '72']}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': '_endpoint'}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'endpoint'}; {'id': '72', 'type': 'break_statement', 'children': []}, {'id': '73', 'type': 'else_clause', 'children': ['74']}; {'id': '74', 'type': 'block', 'children': ['75', '104']}, {'id': '75', 'type': 'if_statement', 'children': ['76', '81']}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '78', 'type': 'argument_list', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'endpoint'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'Mocha'}, {'id': '81', 'type': 'block', 'children': ['82', '96']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'fn'}, {'id': '85', 'type': 'attribute', 'children': ['86', '95']}; {'id': '86', 'type': 'attribute', 'children': ['87', '94']}, {'id': '87', 'type': 'attribute', 'children': ['88', '93']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': '_getframe'}; {'id': '92', 'type': 'argument_list', 'children': []}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'f_back'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'f_code'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'co_name'}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'assignment', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '104', 'type': 'if_statement', 'children': ['105', '109']}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'is_method'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '109', 'type': 'block', 'children': ['110', '117']}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': '_endpoint'}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': '_get_action_endpoint'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'endpoint'}, {'id': '117', 'type': 'if_statement', 'children': ['118', '120']}; {'id': '118', 'type': 'not_operator', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': '_endpoint'}; {'id': '120', 'type': 'block', 'children': ['121']}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': '_endpoint'}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': '_build_endpoint_route_name'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'endpoint'}; {'id': '128', 'type': 'if_statement', 'children': ['129', '130', '141']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': '_endpoint'}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'return_statement', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'f_redirect'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'url_for'}, {'id': '137', 'type': 'argument_list', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': '_endpoint'}, {'id': '139', 'type': 'dictionary_splat', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '141', 'type': 'else_clause', 'children': ['142']}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'raise_statement', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'exceptions'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'MochaError'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': '"Invalid endpoint"'} | def redirect(endpoint, **kw):
_endpoint = None
if isinstance(endpoint, six.string_types):
_endpoint = endpoint
if "/" in endpoint:
return f_redirect(endpoint)
else:
for r in Mocha._app.url_map.iter_rules():
_endpoint = endpoint
if 'GET' in r.methods and endpoint in r.endpoint:
_endpoint = r.endpoint
break
else:
if isinstance(endpoint, Mocha):
fn = sys._getframe().f_back.f_code.co_name
endpoint = getattr(endpoint, fn)
if is_method(endpoint):
_endpoint = _get_action_endpoint(endpoint)
if not _endpoint:
_endpoint = _build_endpoint_route_name(endpoint)
if _endpoint:
return f_redirect(url_for(_endpoint, **kw))
else:
raise exceptions.MochaError("Invalid endpoint") |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_search'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'search_term'}, {'id': '7', 'type': 'block', 'children': ['8', '16', '24', '33', '80', '329']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'criterias'}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'Q'}, {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'rel_criterias'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'Q'}, {'id': '23', 'type': 'argument_list', 'children': []}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'terms'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'shlex'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'search_term'}, {'id': '33', 'type': 'if_statement', 'children': ['34', '50']}; {'id': '34', 'type': 'boolean_operator', 'children': ['35', '41'], 'value': 'and'}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '40'], 'value': '=='}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'terms'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'RE_OBJECTID'}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'terms'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'block', 'children': ['51', '69']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'bson'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ObjectId'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'terms'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '69', 'type': 'if_statement', 'children': ['70', '77']}; {'id': '70', 'type': 'comparison_operator', 'children': ['71', '76'], 'value': '=='}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '75', 'type': 'argument_list', 'children': []}; {'id': '76', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'return_statement', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '80', 'type': 'for_statement', 'children': ['81', '82', '83']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'terms'}, {'id': '83', 'type': 'block', 'children': ['84', '93', '102', '110', '325']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '89']}; {'id': '86', 'type': 'pattern_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'parse_like_term'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '93', 'type': 'if_statement', 'children': ['94', '97']}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': '=='}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '96', 'type': 'string', 'children': [], 'value': "'contains'"}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '101', 'type': 'string', 'children': [], 'value': "'icontains'"}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'criteria'}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'Q'}, {'id': '109', 'type': 'argument_list', 'children': []}; {'id': '110', 'type': 'for_statement', 'children': ['111', '112', '115']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': '_search_fields'}, {'id': '115', 'type': 'block', 'children': ['116']}; {'id': '116', 'type': 'if_statement', 'children': ['117', '126', '206', '296']}, {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '119', 'type': 'argument_list', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '121', 'type': 'attribute', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'ReferenceField'}; {'id': '126', 'type': 'block', 'children': ['127', '133', '158', '174', '189']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'rel_model'}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'document_type'}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'rel_fields'}; {'id': '136', 'type': 'parenthesized_expression', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '154']}; {'id': '138', 'type': 'attribute', 'children': ['139', '153']}, {'id': '139', 'type': 'call', 'children': ['140', '148']}; {'id': '140', 'type': 'attribute', 'children': ['141', '147']}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145', '146']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '145', 'type': 'string', 'children': [], 'value': "'column_searchable_refs'"}; {'id': '146', 'type': 'dictionary', 'children': []}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '148', 'type': 'argument_list', 'children': ['149', '152']}, {'id': '149', 'type': 'attribute', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '152', 'type': 'dictionary', 'children': []}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '154', 'type': 'argument_list', 'children': ['155', '156']}, {'id': '155', 'type': 'string', 'children': [], 'value': "'fields'"}; {'id': '156', 'type': 'list', 'children': ['157'], 'value': "['id']"}, {'id': '157', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '158', 'type': 'if_statement', 'children': ['159', '172']}, {'id': '159', 'type': 'boolean_operator', 'children': ['160', '164'], 'value': 'and'}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': '=='}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'rel_fields'}; {'id': '162', 'type': 'list', 'children': ['163'], 'value': "['id']"}, {'id': '163', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '164', 'type': 'not_operator', 'children': ['165']}, {'id': '165', 'type': 'call', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '169', 'type': 'argument_list', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'RE_OBJECTID'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '172', 'type': 'block', 'children': ['173']}, {'id': '173', 'type': 'continue_statement', 'children': []}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'ids'}, {'id': '177', 'type': 'list_comprehension', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '181', 'type': 'for_in_clause', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'search_relative_field'}, {'id': '185', 'type': 'argument_list', 'children': ['186', '187', '188']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'rel_model'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'rel_fields'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'augmented_assignment', 'children': ['191', '192'], 'value': '|='}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'rel_criterias'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'Q'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'dictionary_splat', 'children': ['198']}; {'id': '198', 'type': 'dictionary', 'children': ['199']}, {'id': '199', 'type': 'pair', 'children': ['200', '205']}; {'id': '200', 'type': 'binary_operator', 'children': ['201', '202'], 'value': '%'}, {'id': '201', 'type': 'string', 'children': [], 'value': "'%s__in'"}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '206', 'type': 'elif_clause', 'children': ['207', '216']}, {'id': '207', 'type': 'call', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '209', 'type': 'argument_list', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '211', 'type': 'attribute', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'ListField'}; {'id': '216', 'type': 'block', 'children': ['217', '232', '240', '264', '279']}, {'id': '217', 'type': 'if_statement', 'children': ['218', '230']}; {'id': '218', 'type': 'not_operator', 'children': ['219']}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '221', 'type': 'argument_list', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '225', 'type': 'attribute', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'ReferenceField'}; {'id': '230', 'type': 'block', 'children': ['231']}, {'id': '231', 'type': 'continue_statement', 'children': []}; {'id': '232', 'type': 'expression_statement', 'children': ['233']}, {'id': '233', 'type': 'assignment', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'rel_model'}, {'id': '235', 'type': 'attribute', 'children': ['236', '239']}; {'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'field'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'document_type_obj'}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'rel_fields'}, {'id': '243', 'type': 'parenthesized_expression', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '261']}, {'id': '245', 'type': 'attribute', 'children': ['246', '260']}; {'id': '246', 'type': 'call', 'children': ['247', '255']}, {'id': '247', 'type': 'attribute', 'children': ['248', '254']}; {'id': '248', 'type': 'call', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '250', 'type': 'argument_list', 'children': ['251', '252', '253']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '252', 'type': 'string', 'children': [], 'value': "'column_searchable_refs'"}, {'id': '253', 'type': 'dictionary', 'children': []}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '255', 'type': 'argument_list', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '259', 'type': 'dictionary', 'children': []}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '261', 'type': 'argument_list', 'children': ['262', '263']}; {'id': '262', 'type': 'string', 'children': [], 'value': "'fields'"}, {'id': '263', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'assignment', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'ids'}, {'id': '267', 'type': 'list_comprehension', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'o'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '271', 'type': 'for_in_clause', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'o'}, {'id': '273', 'type': 'call', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'search_relative_field'}, {'id': '275', 'type': 'argument_list', 'children': ['276', '277', '278']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'rel_model'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'rel_fields'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '279', 'type': 'expression_statement', 'children': ['280']}; {'id': '280', 'type': 'augmented_assignment', 'children': ['281', '282'], 'value': '|='}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'rel_criterias'}; {'id': '282', 'type': 'call', 'children': ['283', '286']}, {'id': '283', 'type': 'attribute', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'Q'}; {'id': '286', 'type': 'argument_list', 'children': ['287']}, {'id': '287', 'type': 'dictionary_splat', 'children': ['288']}; {'id': '288', 'type': 'dictionary', 'children': ['289']}, {'id': '289', 'type': 'pair', 'children': ['290', '295']}; {'id': '290', 'type': 'binary_operator', 'children': ['291', '292'], 'value': '%'}, {'id': '291', 'type': 'string', 'children': [], 'value': "'%s__in'"}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '296', 'type': 'else_clause', 'children': ['297']}, {'id': '297', 'type': 'block', 'children': ['298', '311', '321']}; {'id': '298', 'type': 'expression_statement', 'children': ['299']}, {'id': '299', 'type': 'assignment', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'flt'}, {'id': '301', 'type': 'dictionary', 'children': ['302']}; {'id': '302', 'type': 'pair', 'children': ['303', '310']}, {'id': '303', 'type': 'binary_operator', 'children': ['304', '305'], 'value': '%'}; {'id': '304', 'type': 'string', 'children': [], 'value': "'%s__%s'"}, {'id': '305', 'type': 'tuple', 'children': ['306', '309']}; {'id': '306', 'type': 'attribute', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'field'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '311', 'type': 'expression_statement', 'children': ['312']}; {'id': '312', 'type': 'assignment', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '314', 'type': 'call', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'mongoengine'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'Q'}; {'id': '318', 'type': 'argument_list', 'children': ['319']}, {'id': '319', 'type': 'dictionary_splat', 'children': ['320']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'flt'}, {'id': '321', 'type': 'expression_statement', 'children': ['322']}; {'id': '322', 'type': 'augmented_assignment', 'children': ['323', '324'], 'value': '|='}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'criteria'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '325', 'type': 'expression_statement', 'children': ['326']}; {'id': '326', 'type': 'augmented_assignment', 'children': ['327', '328'], 'value': '&='}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'criterias'}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'criteria'}, {'id': '329', 'type': 'return_statement', 'children': ['330']}; {'id': '330', 'type': 'call', 'children': ['331', '334']}, {'id': '331', 'type': 'attribute', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '334', 'type': 'argument_list', 'children': ['335']}, {'id': '335', 'type': 'binary_operator', 'children': ['336', '337'], 'value': '|'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'criterias'}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'rel_criterias'} | def _search(self, query, search_term):
criterias = mongoengine.Q()
rel_criterias = mongoengine.Q()
terms = shlex.split(search_term)
if len(terms) == 1 and re.match(RE_OBJECTID, terms[0]):
q = query.filter(id=bson.ObjectId(terms[0]))
if q.count() == 1:
return q
for term in terms:
op, term = parse_like_term(term)
if op == 'contains':
op = 'icontains'
criteria = mongoengine.Q()
for field in self._search_fields:
if isinstance(field, mongoengine.fields.ReferenceField):
rel_model = field.document_type
rel_fields = (
getattr(self, 'column_searchable_refs', {})
.get(field.name, {})
.get('fields', ['id'])
)
if rel_fields == ['id'] and not re.match(RE_OBJECTID, term):
continue
ids = [
o.id for o in search_relative_field(rel_model, rel_fields, term)
]
rel_criterias |= mongoengine.Q(**{'%s__in' % field.name: ids})
elif isinstance(field, mongoengine.fields.ListField):
if not isinstance(field.field, mongoengine.fields.ReferenceField):
continue
rel_model = field.field.document_type_obj
rel_fields = (
getattr(self, 'column_searchable_refs', {})
.get(field.name, {})
.get('fields', 'id')
)
ids = [
o.id for o in search_relative_field(rel_model, rel_fields, term)
]
rel_criterias |= mongoengine.Q(**{'%s__in' % field.name: ids})
else:
flt = {'%s__%s' % (field.name, op): term}
q = mongoengine.Q(**flt)
criteria |= q
criterias &= criteria
return query.filter(criterias | rel_criterias) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'replace_seqres'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'pdb'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'update_atoms'}; {'id': '8', 'type': 'True', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '16', '20', '42', '46', '143', '261', '275']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'newpdb'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'PDB'}, {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'inserted_seqres'}, {'id': '19', 'type': 'False', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'entries_before_seqres'}, {'id': '23', 'type': 'call', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'list', 'children': ['27', '28', '29', '30', '31', '32', '33', '34', '35', '36', '37', '38', '39', '40', '41'], 'value': '["HEADER", "OBSLTE", "TITLE", "CAVEAT", "COMPND", "SOURCE", \n "KEYWDS", "EXPDTA", "AUTHOR", "REVDAT", "SPRSDE", "JRNL", \n "REMARK", "DBREF", "SEQADV"]'}, {'id': '27', 'type': 'string', 'children': [], 'value': '"HEADER"'}; {'id': '28', 'type': 'string', 'children': [], 'value': '"OBSLTE"'}, {'id': '29', 'type': 'string', 'children': [], 'value': '"TITLE"'}; {'id': '30', 'type': 'string', 'children': [], 'value': '"CAVEAT"'}, {'id': '31', 'type': 'string', 'children': [], 'value': '"COMPND"'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"SOURCE"'}, {'id': '33', 'type': 'string', 'children': [], 'value': '"KEYWDS"'}; {'id': '34', 'type': 'string', 'children': [], 'value': '"EXPDTA"'}, {'id': '35', 'type': 'string', 'children': [], 'value': '"AUTHOR"'}; {'id': '36', 'type': 'string', 'children': [], 'value': '"REVDAT"'}, {'id': '37', 'type': 'string', 'children': [], 'value': '"SPRSDE"'}; {'id': '38', 'type': 'string', 'children': [], 'value': '"JRNL"'}, {'id': '39', 'type': 'string', 'children': [], 'value': '"REMARK"'}; {'id': '40', 'type': 'string', 'children': [], 'value': '"DBREF"'}, {'id': '41', 'type': 'string', 'children': [], 'value': '"SEQADV"'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'mutated_resids'}, {'id': '45', 'type': 'dictionary', 'children': []}; {'id': '46', 'type': 'if_statement', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'update_atoms'}; {'id': '48', 'type': 'block', 'children': ['49', '55', '64', '76']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'old_seqs'}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'ChainSequences'}; {'id': '54', 'type': 'argument_list', 'children': []}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'chainresnums'}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'old_seqs'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'parse_atoms'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'pdb'}; {'id': '64', 'type': 'assert_statement', 'children': ['65']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '71'], 'value': '=='}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '70', 'type': 'argument_list', 'children': []}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'old_seqs'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '75', 'type': 'argument_list', 'children': []}; {'id': '76', 'type': 'for_statement', 'children': ['77', '78', '83']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '82', 'type': 'argument_list', 'children': []}, {'id': '83', 'type': 'block', 'children': ['84', '98']}; {'id': '84', 'type': 'assert_statement', 'children': ['85']}, {'id': '85', 'type': 'comparison_operator', 'children': ['86', '92'], 'value': '=='}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'subscript', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'old_seqs'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '98', 'type': 'for_statement', 'children': ['99', '100', '109']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'xrange'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '109', 'type': 'block', 'children': ['110']}; {'id': '110', 'type': 'if_statement', 'children': ['111', '122']}, {'id': '111', 'type': 'comparison_operator', 'children': ['112', '117'], 'value': '!='}; {'id': '112', 'type': 'subscript', 'children': ['113', '116']}, {'id': '113', 'type': 'subscript', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '117', 'type': 'subscript', 'children': ['118', '121']}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'old_seqs'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '122', 'type': 'block', 'children': ['123', '133']}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'assignment', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'resid'}; {'id': '126', 'type': 'binary_operator', 'children': ['127', '128'], 'value': '+'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '128', 'type': 'subscript', 'children': ['129', '132']}, {'id': '129', 'type': 'subscript', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'chainresnums'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '138']}, {'id': '135', 'type': 'subscript', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'mutated_resids'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'resid'}; {'id': '138', 'type': 'subscript', 'children': ['139', '142']}, {'id': '139', 'type': 'subscript', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '143', 'type': 'for_statement', 'children': ['144', '145', '148']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'pdb'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '148', 'type': 'block', 'children': ['149', '158', '181']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '154', 'type': 'slice', 'children': ['155', '156', '157']}, {'id': '155', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '156', 'type': 'colon', 'children': []}, {'id': '157', 'type': 'integer', 'children': [], 'value': '6'}; {'id': '158', 'type': 'if_statement', 'children': ['159', '166']}, {'id': '159', 'type': 'boolean_operator', 'children': ['160', '163'], 'value': 'and'}; {'id': '160', 'type': 'parenthesized_expression', 'children': ['161']}, {'id': '161', 'type': 'not_operator', 'children': ['162']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'inserted_seqres'}, {'id': '163', 'type': 'comparison_operator', 'children': ['164', '165'], 'value': 'not'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'entries_before_seqres'}; {'id': '166', 'type': 'block', 'children': ['167', '171']}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'assignment', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'inserted_seqres'}; {'id': '170', 'type': 'True', 'children': []}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'augmented_assignment', 'children': ['173', '176'], 'value': '+='}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'newpdb'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '176', 'type': 'call', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'seqres_lines'}; {'id': '180', 'type': 'argument_list', 'children': []}, {'id': '181', 'type': 'if_statement', 'children': ['182', '187', '249']}; {'id': '182', 'type': 'boolean_operator', 'children': ['183', '184'], 'value': 'and'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'update_atoms'}; {'id': '184', 'type': 'comparison_operator', 'children': ['185', '186'], 'value': '=='}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '186', 'type': 'string', 'children': [], 'value': '"ATOM "'}, {'id': '187', 'type': 'block', 'children': ['188', '197', '210']}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'assignment', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'resid'}, {'id': '191', 'type': 'subscript', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '193', 'type': 'slice', 'children': ['194', '195', '196']}; {'id': '194', 'type': 'integer', 'children': [], 'value': '21'}, {'id': '195', 'type': 'colon', 'children': []}; {'id': '196', 'type': 'integer', 'children': [], 'value': '27'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'atom'}; {'id': '200', 'type': 'call', 'children': ['201', '209']}, {'id': '201', 'type': 'attribute', 'children': ['202', '208']}; {'id': '202', 'type': 'subscript', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '204', 'type': 'slice', 'children': ['205', '206', '207']}, {'id': '205', 'type': 'integer', 'children': [], 'value': '12'}; {'id': '206', 'type': 'colon', 'children': []}, {'id': '207', 'type': 'integer', 'children': [], 'value': '16'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '209', 'type': 'argument_list', 'children': []}; {'id': '210', 'type': 'if_statement', 'children': ['211', '218', '226']}, {'id': '211', 'type': 'not_operator', 'children': ['212']}; {'id': '212', 'type': 'call', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'mutated_resids'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'has_key'}; {'id': '216', 'type': 'argument_list', 'children': ['217']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'resid'}; {'id': '218', 'type': 'block', 'children': ['219']}, {'id': '219', 'type': 'expression_statement', 'children': ['220']}; {'id': '220', 'type': 'augmented_assignment', 'children': ['221', '224'], 'value': '+='}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'newpdb'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '224', 'type': 'list', 'children': ['225'], 'value': '[line]'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '226', 'type': 'else_clause', 'children': ['227']}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'augmented_assignment', 'children': ['230', '233'], 'value': '+='}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'newpdb'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '233', 'type': 'list', 'children': ['234'], 'value': '[line[:17] + mutated_resids[resid] + line[20:]]'}; {'id': '234', 'type': 'binary_operator', 'children': ['235', '244'], 'value': '+'}, {'id': '235', 'type': 'binary_operator', 'children': ['236', '241'], 'value': '+'}; {'id': '236', 'type': 'subscript', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '238', 'type': 'slice', 'children': ['239', '240']}, {'id': '239', 'type': 'colon', 'children': []}; {'id': '240', 'type': 'integer', 'children': [], 'value': '17'}, {'id': '241', 'type': 'subscript', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'mutated_resids'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'resid'}; {'id': '244', 'type': 'subscript', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '246', 'type': 'slice', 'children': ['247', '248']}, {'id': '247', 'type': 'integer', 'children': [], 'value': '20'}; {'id': '248', 'type': 'colon', 'children': []}, {'id': '249', 'type': 'elif_clause', 'children': ['250', '253']}; {'id': '250', 'type': 'comparison_operator', 'children': ['251', '252'], 'value': '!='}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '252', 'type': 'string', 'children': [], 'value': '"SEQRES"'}, {'id': '253', 'type': 'block', 'children': ['254']}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'augmented_assignment', 'children': ['256', '259'], 'value': '+='}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'newpdb'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '259', 'type': 'list', 'children': ['260'], 'value': '[line]'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '261', 'type': 'if_statement', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'update_atoms'}, {'id': '263', 'type': 'block', 'children': ['264']}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'call', 'children': ['266', '269']}; {'id': '266', 'type': 'attribute', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'newpdb'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'remove_nonbackbone_atoms'}, {'id': '269', 'type': 'argument_list', 'children': ['270']}; {'id': '270', 'type': 'call', 'children': ['271', '274']}, {'id': '271', 'type': 'attribute', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'mutated_resids'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '274', 'type': 'argument_list', 'children': []}, {'id': '275', 'type': 'return_statement', 'children': ['276']} | def replace_seqres(self, pdb, update_atoms = True):
newpdb = PDB()
inserted_seqres = False
entries_before_seqres = set(["HEADER", "OBSLTE", "TITLE", "CAVEAT", "COMPND", "SOURCE",
"KEYWDS", "EXPDTA", "AUTHOR", "REVDAT", "SPRSDE", "JRNL",
"REMARK", "DBREF", "SEQADV"])
mutated_resids = {}
if update_atoms:
old_seqs = ChainSequences()
chainresnums = old_seqs.parse_atoms(pdb)
assert self.keys() == old_seqs.keys()
for chain in self.keys():
assert len(self[chain]) == len(old_seqs[chain])
for i in xrange(len(self[chain])):
if self[chain][i] != old_seqs[chain][i]:
resid = chain + chainresnums[chain][i]
mutated_resids[resid] = self[chain][i]
for line in pdb.lines:
entry = line[0:6]
if (not inserted_seqres) and entry not in entries_before_seqres:
inserted_seqres = True
newpdb.lines += self.seqres_lines()
if update_atoms and entry == "ATOM ":
resid = line[21:27]
atom = line[12:16].strip()
if not mutated_resids.has_key(resid):
newpdb.lines += [line]
else:
newpdb.lines += [line[:17] + mutated_resids[resid] + line[20:]]
elif entry != "SEQRES":
newpdb.lines += [line]
if update_atoms:
newpdb.remove_nonbackbone_atoms(mutated_resids.keys())
return newpdb |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'enrich_json_objects_by_object_type'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '6', 'type': 'block', 'children': ['7', '13', '62', '74', '212', '228']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'time_start_globally'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '12', 'type': 'argument_list', 'children': []}, {'id': '13', 'type': 'if_statement', 'children': ['14', '19', '39']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '23', 'type': 'list_comprehension', 'children': ['24', '36']}; {'id': '24', 'type': 'conditional_expression', 'children': ['25', '30', '35'], 'value': 'if'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'to_json'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; 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{'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'binary_operator', 'children': ['224', '227'], 'value': '-'}; {'id': '224', 'type': 'call', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '226', 'type': 'argument_list', 'children': []}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'time_start_globally'}; {'id': '228', 'type': 'return_statement', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'json'} | def enrich_json_objects_by_object_type(request, value):
time_start_globally = time()
if isinstance(value, list):
json = [x.to_json() if hasattr(x, "to_json") else x for x in value]
else:
if isinstance(value, dict):
json = value
else:
json = value.to_json()
objects, nested = _collect_json_objects(json, by='object_type')
for enricher_info in _get_OBJECT_TYPE_ENRICHER_ORDER():
if len(enricher_info['object_types']) > 0:
enricher_objects = flatten([objects.get(object_type, []) for object_type in enricher_info['object_types']])
enricher_nested = any([nested.get(object_type, False) for object_type in enricher_info['object_types']])
else:
enricher_objects = flatten(objects.values())
enricher_nested = any(nested.values())
if len(enricher_objects) > 0:
time_start = time()
enricher_info['enricher'](request, enricher_objects, enricher_nested)
LOGGER.debug('enrichment "{}" took {} seconds'.format(enricher_info['enricher_name'], time() - time_start))
if not enricher_info['pure']:
objects, nested = _collect_json_objects(json, by='object_type')
LOGGER.debug('The whole enrichment of json objects by their object_type took {} seconds.'.format(time() - time_start_globally))
return json |
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{'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'is'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '66', 'type': 'None', 'children': []}, {'id': '67', 'type': 'block', 'children': ['68', '92']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '71', 'type': 'conditional_expression', 'children': ['72', '75', '80'], 'value': 'if'}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'Term'}; {'id': '80', 'type': 'attribute', 'children': ['81', '91']}, {'id': '81', 'type': 'call', 'children': ['82', '87']}; {'id': '82', 'type': 'attribute', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'Term'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '109']}; {'id': '94', 'type': 'attribute', 'children': ['95', '108']}, {'id': '95', 'type': 'call', 'children': ['96', '101']}; {'id': '96', 'type': 'attribute', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'ItemRelation'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '105']}; {'id': '102', 'type': 'keyword_argument', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'parent_id'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'child_id'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'delete'}, {'id': '109', 'type': 'argument_list', 'children': []}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'call', 'children': ['112', '117']}; {'id': '112', 'type': 'attribute', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'ItemRelation'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'get_or_create'}, {'id': '117', 'type': 'argument_list', 'children': ['118', '125', '128']}; {'id': '118', 'type': 'keyword_argument', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'parent_id'}; {'id': '120', 'type': 'attribute', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'child_id'}; {'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'visible'}; {'id': '130', 'type': 'True', 'children': []}, {'id': '131', 'type': 'if_statement', 'children': ['132', '147']}; {'id': '132', 'type': 'comparison_operator', 'children': ['133', '146'], 'value': '!='}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'binary_operator', 'children': ['137', '140'], 'value': '&'}, {'id': '137', 'type': 'set', 'children': ['138', '139']}; {'id': '138', 'type': 'string', 'children': [], 'value': "'term_secondary'"}, {'id': '139', 'type': 'string', 'children': [], 'value': "'term_secondary_id'"}; {'id': '140', 'type': 'call', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '142', 'type': 'argument_list', 'children': ['143']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'changed_fields'}; {'id': '146', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '147', 'type': 'block', 'children': ['148', '154', '160', '177', '224']}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'diff'}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'diff'}; {'id': '154', 'type': 'expression_statement', 'children': ['155']}, {'id': '155', 'type': 'assignment', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'assignment', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '163', 'type': 'conditional_expression', 'children': ['164', '169', '172'], 'value': 'if'}; {'id': '164', 'type': 'subscript', 'children': ['165', '168']}, {'id': '165', 'type': 'subscript', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'diff'}, {'id': '167', 'type': 'string', 'children': [], 'value': "'term_secondary'"}; {'id': '168', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '169', 'type': 'comparison_operator', 'children': ['170', '171'], 'value': 'in'}; {'id': '170', 'type': 'string', 'children': [], 'value': "'term_secondary'"}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'diff'}; {'id': '172', 'type': 'subscript', 'children': ['173', '176']}, {'id': '173', 'type': 'subscript', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'diff'}, {'id': '175', 'type': 'string', 'children': [], 'value': "'term_secondary_id'"}; {'id': '176', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '177', 'type': 'if_statement', 'children': ['178', '181']}; {'id': '178', 'type': 'comparison_operator', 'children': ['179', '180'], 'value': 'is'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '180', 'type': 'None', 'children': []}, {'id': '181', 'type': 'block', 'children': ['182', '206']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '185', 'type': 'conditional_expression', 'children': ['186', '189', '194'], 'value': 'if'}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '189', 'type': 'call', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '191', 'type': 'argument_list', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'Term'}; {'id': '194', 'type': 'attribute', 'children': ['195', '205']}, {'id': '195', 'type': 'call', 'children': ['196', '201']}; {'id': '196', 'type': 'attribute', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'Term'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'keyword_argument', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'pk'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'call', 'children': ['208', '223']}; {'id': '208', 'type': 'attribute', 'children': ['209', '222']}, {'id': '209', 'type': 'call', 'children': ['210', '215']}; {'id': '210', 'type': 'attribute', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'ItemRelation'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '215', 'type': 'argument_list', 'children': ['216', '219']}; {'id': '216', 'type': 'keyword_argument', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'parent_id'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '219', 'type': 'keyword_argument', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'child_id'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'delete'}, {'id': '223', 'type': 'argument_list', 'children': []}; {'id': '224', 'type': 'if_statement', 'children': ['225', '236']}, {'id': '225', 'type': 'boolean_operator', 'children': ['226', '231'], 'value': 'or'}; {'id': '226', 'type': 'comparison_operator', 'children': ['227', '230'], 'value': 'is'}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'term_secondary'}; {'id': '230', 'type': 'None', 'children': []}, {'id': '231', 'type': 'comparison_operator', 'children': ['232', '235'], 'value': 'is'}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'term_secondary_id'}, {'id': '235', 'type': 'None', 'children': []}; {'id': '236', 'type': 'block', 'children': ['237']}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '244']}, {'id': '239', 'type': 'attribute', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'ItemRelation'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'get_or_create'}; {'id': '244', 'type': 'argument_list', 'children': ['245', '252', '255']}, {'id': '245', 'type': 'keyword_argument', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '247', 'type': 'attribute', 'children': ['248', '251']}; {'id': '248', 'type': 'attribute', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'term_secondary'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '252', 'type': 'keyword_argument', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'child_id'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '255', 'type': 'keyword_argument', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'visible'}, {'id': '257', 'type': 'True', 'children': []}; {'id': '258', 'type': 'if_statement', 'children': ['259', '274']}, {'id': '259', 'type': 'comparison_operator', 'children': ['260', '273'], 'value': '!='}; {'id': '260', 'type': 'call', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '262', 'type': 'argument_list', 'children': ['263']}, {'id': '263', 'type': 'binary_operator', 'children': ['264', '267'], 'value': '&'}; {'id': '264', 'type': 'set', 'children': ['265', '266']}, {'id': '265', 'type': 'string', 'children': [], 'value': "'context'"}; {'id': '266', 'type': 'string', 'children': [], 'value': "'context_id'"}, {'id': '267', 'type': 'call', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '269', 'type': 'argument_list', 'children': ['270']}; {'id': '270', 'type': 'attribute', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'changed_fields'}, {'id': '273', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '274', 'type': 'block', 'children': ['275', '281', '298', '304', '351']}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'assignment', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'diff'}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'diff'}, {'id': '281', 'type': 'expression_statement', 'children': ['282']}; {'id': '282', 'type': 'assignment', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '284', 'type': 'conditional_expression', 'children': ['285', '290', '293'], 'value': 'if'}, {'id': '285', 'type': 'subscript', 'children': ['286', '289']}; {'id': '286', 'type': 'subscript', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'diff'}; {'id': '288', 'type': 'string', 'children': [], 'value': "'context'"}, {'id': '289', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '290', 'type': 'comparison_operator', 'children': ['291', '292'], 'value': 'in'}, {'id': '291', 'type': 'string', 'children': [], 'value': "'context'"}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'diff'}, {'id': '293', 'type': 'subscript', 'children': ['294', '297']}; {'id': '294', 'type': 'subscript', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'diff'}; {'id': '296', 'type': 'string', 'children': [], 'value': "'context_id'"}, {'id': '297', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '298', 'type': 'expression_statement', 'children': ['299']}, {'id': '299', 'type': 'assignment', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '301', 'type': 'attribute', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '304', 'type': 'if_statement', 'children': ['305', '308']}, {'id': '305', 'type': 'comparison_operator', 'children': ['306', '307'], 'value': 'is'}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '307', 'type': 'None', 'children': []}; {'id': '308', 'type': 'block', 'children': ['309', '333']}, {'id': '309', 'type': 'expression_statement', 'children': ['310']}; {'id': '310', 'type': 'assignment', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'parent_id'}; {'id': '312', 'type': 'conditional_expression', 'children': ['313', '316', '321'], 'value': 'if'}, {'id': '313', 'type': 'attribute', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '316', 'type': 'call', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '318', 'type': 'argument_list', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'Context'}, {'id': '321', 'type': 'attribute', 'children': ['322', '332']}; {'id': '322', 'type': 'call', 'children': ['323', '328']}, {'id': '323', 'type': 'attribute', 'children': ['324', '327']}; {'id': '324', 'type': 'attribute', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'Context'}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '328', 'type': 'argument_list', 'children': ['329']}, {'id': '329', 'type': 'keyword_argument', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'pk'}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'item_id'}, {'id': '333', 'type': 'expression_statement', 'children': ['334']}; {'id': '334', 'type': 'call', 'children': ['335', '350']}, {'id': '335', 'type': 'attribute', 'children': ['336', '349']}; {'id': '336', 'type': 'call', 'children': ['337', '342']}, {'id': '337', 'type': 'attribute', 'children': ['338', '341']}; {'id': '338', 'type': 'attribute', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'ItemRelation'}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '342', 'type': 'argument_list', 'children': ['343', '346']}, {'id': '343', 'type': 'keyword_argument', 'children': ['344', '345']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'parent_id'}; {'id': '346', 'type': 'keyword_argument', 'children': ['347', '348']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'child_id'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'delete'}; {'id': '350', 'type': 'argument_list', 'children': []}, {'id': '351', 'type': 'expression_statement', 'children': ['352']}; {'id': '352', 'type': 'call', 'children': ['353', '358']}, {'id': '353', 'type': 'attribute', 'children': ['354', '357']}; {'id': '354', 'type': 'attribute', 'children': ['355', '356']}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'ItemRelation'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'get_or_create'}; {'id': '358', 'type': 'argument_list', 'children': ['359', '366', '369']}, {'id': '359', 'type': 'keyword_argument', 'children': ['360', '361']}; {'id': '360', 'type': 'identifier', 'children': [], 'value': 'parent_id'}, {'id': '361', 'type': 'attribute', 'children': ['362', '365']}; {'id': '362', 'type': 'attribute', 'children': ['363', '364']}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '364', 'type': 'identifier', 'children': [], 'value': 'context'}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'item_id'}; {'id': '366', 'type': 'keyword_argument', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'child_id'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'child_id'}, {'id': '369', 'type': 'keyword_argument', 'children': ['370', '371']}; {'id': '370', 'type': 'identifier', 'children': [], 'value': 'visible'}, {'id': '371', 'type': 'True', 'children': []} | def change_parent(sender, instance, **kwargs):
if instance.id is None:
return
if len({'term', 'term_id'} & set(instance.changed_fields)) != 0:
diff = instance.diff
parent = diff['term'][0] if 'term' in diff else diff['term_id'][0]
child_id = instance.item_id
if parent is not None:
parent_id = parent.item_id if isinstance(parent, Term) else Term.objects.get(pk=parent).item_id
ItemRelation.objects.filter(parent_id=parent_id, child_id=child_id).delete()
ItemRelation.objects.get_or_create(parent_id=instance.term.item_id, child_id=child_id, visible=True)
if len({'term_secondary', 'term_secondary_id'} & set(instance.changed_fields)) != 0:
diff = instance.diff
child_id = instance.item_id
parent = diff['term_secondary'][0] if 'term_secondary' in diff else diff['term_secondary_id'][0]
if parent is not None:
parent_id = parent.item_id if isinstance(parent, Term) else Term.objects.get(pk=parent).item_id
ItemRelation.objects.filter(parent_id=parent_id, child_id=child_id).delete()
if instance.term_secondary is not None or instance.term_secondary_id is not None:
ItemRelation.objects.get_or_create(parent_id=instance.term_secondary.item_id, child_id=child_id, visible=True)
if len({'context', 'context_id'} & set(instance.changed_fields)) != 0:
diff = instance.diff
parent = diff['context'][0] if 'context' in diff else diff['context_id'][0]
child_id = instance.item_id
if parent is not None:
parent_id = parent.item_id if isinstance(parent, Context) else Context.objects.get(pk=parent).item_id
ItemRelation.objects.filter(parent_id=parent_id, child_id=child_id).delete()
ItemRelation.objects.get_or_create(parent_id=instance.context.item_id, child_id=child_id, visible=True) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'bin_atoms'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '26', '44', '60', '90', '94', '162', '231', '299', '303', '359']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''This function bins the Atoms into fixed-size sections of the protein space in 3D.'''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'low_point'}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'array'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'list', 'children': ['17', '20', '23'], 'value': '[self.min_x, self.min_y, self.min_z]'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'min_x'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'min_y'}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'min_z'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'high_point'}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'array'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'list', 'children': ['35', '38', '41'], 'value': '[self.max_x, self.max_y, self.max_z]'}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'max_x'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'max_y'}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'max_z'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'ceil'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '57'], 'value': '/'}, {'id': '53', 'type': 'parenthesized_expression', 'children': ['54']}; {'id': '54', 'type': 'binary_operator', 'children': ['55', '56'], 'value': '-'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'high_point'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'low_point'}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'bin_size'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}, {'id': '65', 'type': 'tuple', 'children': ['66', '74', '82']}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '73'], 'value': '-'}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '73', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '74', 'type': 'binary_operator', 'children': ['75', '81'], 'value': '-'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'subscript', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '82', 'type': 'binary_operator', 'children': ['83', '89'], 'value': '-'}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'subscript', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '89', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}, {'id': '93', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '94', 'type': 'for_statement', 'children': ['95', '96', '105']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'subscript', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '105', 'type': 'block', 'children': ['106', '113']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '113', 'type': 'for_statement', 'children': ['114', '115', '124']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'call', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'subscript', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}, {'id': '123', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '124', 'type': 'block', 'children': ['125', '134']}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'call', 'children': ['127', '132']}, {'id': '127', 'type': 'attribute', 'children': ['128', '131']}; {'id': '128', 'type': 'subscript', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '134', 'type': 'for_statement', 'children': ['135', '136', '145']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'subscript', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '144', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'call', 'children': ['148', '155']}; {'id': '148', 'type': 'attribute', 'children': ['149', '154']}, {'id': '149', 'type': 'subscript', 'children': ['150', '153']}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'Bin'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '160', '161']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '162', 'type': 'for_statement', 'children': ['163', '166', '173']}, {'id': '163', 'type': 'pattern_list', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'serial_number'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'atom'}; {'id': '166', 'type': 'call', 'children': ['167', '172']}, {'id': '167', 'type': 'attribute', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '172', 'type': 'argument_list', 'children': []}, {'id': '173', 'type': 'block', 'children': ['174', '192', '217', '224']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'bin_location'}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'trunc'}, {'id': '181', 'type': 'argument_list', 'children': ['182']}; {'id': '182', 'type': 'binary_operator', 'children': ['183', '189'], 'value': '/'}, {'id': '183', 'type': 'parenthesized_expression', 'children': ['184']}; {'id': '184', 'type': 'binary_operator', 'children': ['185', '188'], 'value': '-'}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'atom'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'point'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'low_point'}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'bin_size'}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'assignment', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'bin'}, {'id': '195', 'type': 'subscript', 'children': ['196', '211']}; {'id': '196', 'type': 'subscript', 'children': ['197', '205']}, {'id': '197', 'type': 'subscript', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}, {'id': '199', 'type': 'call', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'subscript', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'bin_location'}; {'id': '204', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '205', 'type': 'call', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'subscript', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'bin_location'}; {'id': '210', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '211', 'type': 'call', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'subscript', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'bin_location'}; {'id': '216', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'call', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'bin'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'atom'}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'atom'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'set_bin'}, {'id': '229', 'type': 'argument_list', 'children': ['230']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'bin'}, {'id': '231', 'type': 'if_statement', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'safe_mode'}, {'id': '235', 'type': 'block', 'children': ['236', '240', '289']}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'assignment', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'num_atoms'}, {'id': '239', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '240', 'type': 'for_statement', 'children': ['241', '242', '251']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '242', 'type': 'call', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '244', 'type': 'argument_list', 'children': ['245']}, {'id': '245', 'type': 'call', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '247', 'type': 'argument_list', 'children': ['248']}; {'id': '248', 'type': 'subscript', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '250', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '251', 'type': 'block', 'children': ['252']}; {'id': '252', 'type': 'for_statement', 'children': ['253', '254', '263']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '254', 'type': 'call', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '256', 'type': 'argument_list', 'children': ['257']}, {'id': '257', 'type': 'call', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '259', 'type': 'argument_list', 'children': ['260']}; {'id': '260', 'type': 'subscript', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '262', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '263', 'type': 'block', 'children': ['264']}; {'id': '264', 'type': 'for_statement', 'children': ['265', '266', '275']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '266', 'type': 'call', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '268', 'type': 'argument_list', 'children': ['269']}, {'id': '269', 'type': 'call', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'subscript', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}; {'id': '274', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '275', 'type': 'block', 'children': ['276']}; {'id': '276', 'type': 'expression_statement', 'children': ['277']}, {'id': '277', 'type': 'augmented_assignment', 'children': ['278', '279'], 'value': '+='}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'num_atoms'}, {'id': '279', 'type': 'call', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '281', 'type': 'argument_list', 'children': ['282']}; {'id': '282', 'type': 'subscript', 'children': ['283', '288']}, {'id': '283', 'type': 'subscript', 'children': ['284', '287']}; {'id': '284', 'type': 'subscript', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'z'}, {'id': '289', 'type': 'assert_statement', 'children': ['290']}; {'id': '290', 'type': 'parenthesized_expression', 'children': ['291']}, {'id': '291', 'type': 'comparison_operator', 'children': ['292', '293'], 'value': '=='}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'num_atoms'}, {'id': '293', 'type': 'call', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '295', 'type': 'argument_list', 'children': ['296']}; {'id': '296', 'type': 'attribute', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '299', 'type': 'expression_statement', 'children': ['300']}; {'id': '300', 'type': 'assignment', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'blank_section'}; {'id': '302', 'type': 'tuple', 'children': []}, {'id': '303', 'type': 'for_statement', 'children': ['304', '305', '314']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '305', 'type': 'call', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '307', 'type': 'argument_list', 'children': ['308']}; {'id': '308', 'type': 'call', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '310', 'type': 'argument_list', 'children': ['311']}, {'id': '311', 'type': 'subscript', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}, {'id': '313', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '314', 'type': 'block', 'children': ['315']}, {'id': '315', 'type': 'for_statement', 'children': ['316', '317', '326']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '317', 'type': 'call', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '319', 'type': 'argument_list', 'children': ['320']}; {'id': '320', 'type': 'call', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '322', 'type': 'argument_list', 'children': ['323']}, {'id': '323', 'type': 'subscript', 'children': ['324', '325']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}, {'id': '325', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '326', 'type': 'block', 'children': ['327']}, {'id': '327', 'type': 'for_statement', 'children': ['328', '329', '338']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'z'}, {'id': '329', 'type': 'call', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '331', 'type': 'argument_list', 'children': ['332']}; {'id': '332', 'type': 'call', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '334', 'type': 'argument_list', 'children': ['335']}, {'id': '335', 'type': 'subscript', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'atom_bin_dimensions'}, {'id': '337', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '338', 'type': 'block', 'children': ['339']}, {'id': '339', 'type': 'if_statement', 'children': ['340', '348']}; {'id': '340', 'type': 'not_operator', 'children': ['341']}, {'id': '341', 'type': 'subscript', 'children': ['342', '347']}; {'id': '342', 'type': 'subscript', 'children': ['343', '346']}, {'id': '343', 'type': 'subscript', 'children': ['344', '345']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '348', 'type': 'block', 'children': ['349']}, {'id': '349', 'type': 'expression_statement', 'children': ['350']}; {'id': '350', 'type': 'assignment', 'children': ['351', '358']}, {'id': '351', 'type': 'subscript', 'children': ['352', '357']}; {'id': '352', 'type': 'subscript', 'children': ['353', '356']}, {'id': '353', 'type': 'subscript', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'atom_bins'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'z'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'blank_section'}, {'id': '359', 'type': 'expression_statement', 'children': ['360']}; {'id': '360', 'type': 'assignment', 'children': ['361', '364']}, {'id': '361', 'type': 'attribute', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'atom_bins'} | def bin_atoms(self):
'''This function bins the Atoms into fixed-size sections of the protein space in 3D.'''
low_point = numpy.array([self.min_x, self.min_y, self.min_z])
high_point = numpy.array([self.max_x, self.max_y, self.max_z])
atom_bin_dimensions = numpy.ceil((high_point - low_point) / self.bin_size)
self.atom_bin_dimensions = (int(atom_bin_dimensions[0]) - 1, int(atom_bin_dimensions[1]) - 1, int(atom_bin_dimensions[2]) - 1)
atom_bins = []
for x in range(int(atom_bin_dimensions[0])):
atom_bins.append([])
for y in range(int(atom_bin_dimensions[1])):
atom_bins[x].append([])
for z in range(int(atom_bin_dimensions[2])):
atom_bins[x][y].append(Bin(x, y, z))
for serial_number, atom in self.atoms.iteritems():
bin_location = numpy.trunc((atom.point - low_point) / self.bin_size)
bin = atom_bins[int(bin_location[0])][int(bin_location[1])][int(bin_location[2])]
bin.append(atom)
atom.set_bin(bin)
if self.safe_mode:
num_atoms = 0
for x in range(int(atom_bin_dimensions[0])):
for y in range(int(atom_bin_dimensions[1])):
for z in range(int(atom_bin_dimensions[2])):
num_atoms += len(atom_bins[x][y][z])
assert(num_atoms == len(self.atoms))
blank_section = ()
for x in range(int(atom_bin_dimensions[0])):
for y in range(int(atom_bin_dimensions[1])):
for z in range(int(atom_bin_dimensions[2])):
if not atom_bins[x][y][z]:
atom_bins[x][y][z] = blank_section
self.atom_bins = atom_bins |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '6', 'type': 'list_splat_pattern', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '8', 'type': 'block', 'children': ['9', '24', '39', '43', '52', '109']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '18']}; {'id': '10', 'type': 'not_operator', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'attr_name'}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'raise_statement', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'string', 'children': [], 'value': "'attr_name must be a str.'"}; {'id': '24', 'type': 'if_statement', 'children': ['25', '28']}, {'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'in'}; {'id': '26', 'type': 'string', 'children': [], 'value': "'-'"}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'attr_name'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}, {'id': '37', 'type': 'string', 'children': [], 'value': "'-'"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'_'"}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'attr_name'}, {'id': '51', 'type': 'None', 'children': []}; {'id': '52', 'type': 'for_statement', 'children': ['53', '54', '55', '106']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '55', 'type': 'block', 'children': ['56', '76']}; {'id': '56', 'type': 'if_statement', 'children': ['57', '65']}, {'id': '57', 'type': 'not_operator', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'string_types'}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'raise_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': "'each additional argument must be a string. {0} was not a string'"}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '76', 'type': 'if_statement', 'children': ['77', '82']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '79', 'type': 'argument_list', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'arg'}; {'id': '82', 'type': 'block', 'children': ['83', '91']}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '88', 'type': 'argument_list', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'arg'}, {'id': '91', 'type': 'if_statement', 'children': ['92', '97']}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'attr_name'}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'attr'}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '103', 'type': 'argument_list', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'parent_attr'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '106', 'type': 'else_clause', 'children': ['107']}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'pass_statement', 'children': []}, {'id': '109', 'type': 'return_statement', 'children': ['110']} | def get(self, attr_name, *args):
if not isinstance(attr_name, six.string_types):
raise TypeError('attr_name must be a str.')
if '-' in attr_name:
attr_name = attr_name.replace('-', '_')
parent_attr = self
attr = getattr(parent_attr, attr_name, None)
for arg in args:
if not isinstance(arg, six.string_types):
raise TypeError(
'each additional argument must be a string. {0} was not a string'.format(arg)
)
if hasattr(parent_attr, arg):
parent_attr = getattr(parent_attr, arg)
if hasattr(parent_attr, attr_name):
attr = getattr(parent_attr, attr_name)
else:
pass
return attr |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_load_yml_config'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'config_file'}; {'id': '6', 'type': 'block', 'children': ['7', '22']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '16']}; {'id': '8', 'type': 'not_operator', 'children': ['9']}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '11', 'type': 'argument_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'raise_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'string', 'children': [], 'value': "'config_file must be a str.'"}; {'id': '22', 'type': 'try_statement', 'children': ['23', '263']}, {'id': '23', 'type': 'block', 'children': ['24', '55', '87', '126', '158', '190', '198', '206', '214', '222', '230', '241', '251']}; {'id': '24', 'type': 'function_definition', 'children': ['25', '26', '29']}, {'id': '25', 'type': 'function_name', 'children': [], 'value': 'construct_yaml_int'}; {'id': '26', 'type': 'parameters', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '29', 'type': 'block', 'children': ['30', '40', '53']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_int'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'ConfigInt'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47', '50']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'start_mark'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'end_mark'}, {'id': '53', 'type': 'return_statement', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '55', 'type': 'function_definition', 'children': ['56', '57', '60']}; {'id': '56', 'type': 'function_name', 'children': [], 'value': 'construct_yaml_float'}, {'id': '57', 'type': 'parameters', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '60', 'type': 'block', 'children': ['61', '72', '85']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '65']}, {'id': '63', 'type': 'pattern_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_float'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'ConfigFloat'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79', '82']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'start_mark'}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'end_mark'}, {'id': '85', 'type': 'return_statement', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '87', 'type': 'function_definition', 'children': ['88', '89', '92']}; {'id': '88', 'type': 'function_name', 'children': [], 'value': 'construct_yaml_str'}, {'id': '89', 'type': 'parameters', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '92', 'type': 'block', 'children': ['93', '103', '111', '124']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'construct_scalar'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '103', 'type': 'assert_statement', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'string_types'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '114', 'type': 'call', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'ConfigUnicode'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '118', '121']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'start_mark'}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'end_mark'}; {'id': '124', 'type': 'return_statement', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '126', 'type': 'function_definition', 'children': ['127', '128', '131']}, {'id': '127', 'type': 'function_name', 'children': [], 'value': 'construct_yaml_mapping'}; {'id': '128', 'type': 'parameters', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '131', 'type': 'block', 'children': ['132', '143', '156']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '136']}; {'id': '134', 'type': 'pattern_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_map'}; {'id': '140', 'type': 'argument_list', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '146', 'type': 'call', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'ConfigDict'}; {'id': '148', 'type': 'argument_list', 'children': ['149', '150', '153']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'start_mark'}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'end_mark'}; {'id': '156', 'type': 'return_statement', 'children': ['157']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '158', 'type': 'function_definition', 'children': ['159', '160', '163']}, {'id': '159', 'type': 'function_name', 'children': [], 'value': 'construct_yaml_seq'}; {'id': '160', 'type': 'parameters', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '163', 'type': 'block', 'children': ['164', '175', '188']}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '168']}; {'id': '166', 'type': 'pattern_list', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_seq'}; {'id': '172', 'type': 'argument_list', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'assignment', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '178', 'type': 'call', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'ConfigSeq'}; {'id': '180', 'type': 'argument_list', 'children': ['181', '182', '185']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'start_mark'}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'end_mark'}; {'id': '188', 'type': 'return_statement', 'children': ['189']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'add_constructor'}, {'id': '195', 'type': 'argument_list', 'children': ['196', '197']}; {'id': '196', 'type': 'string', 'children': [], 'value': "u'tag:yaml.org,2002:float'"}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_float'}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'add_constructor'}, {'id': '203', 'type': 'argument_list', 'children': ['204', '205']}; {'id': '204', 'type': 'string', 'children': [], 'value': "u'tag:yaml.org,2002:int'"}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_int'}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'call', 'children': ['208', '211']}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'add_constructor'}, {'id': '211', 'type': 'argument_list', 'children': ['212', '213']}; {'id': '212', 'type': 'string', 'children': [], 'value': "u'tag:yaml.org,2002:map'"}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_mapping'}; {'id': '214', 'type': 'expression_statement', 'children': ['215']}, {'id': '215', 'type': 'call', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'add_constructor'}, {'id': '219', 'type': 'argument_list', 'children': ['220', '221']}; {'id': '220', 'type': 'string', 'children': [], 'value': "u'tag:yaml.org,2002:seq'"}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_seq'}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'call', 'children': ['224', '227']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'SafeConstructor'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'add_constructor'}, {'id': '227', 'type': 'argument_list', 'children': ['228', '229']}; {'id': '228', 'type': 'string', 'children': [], 'value': "u'tag:yaml.org,2002:str'"}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'construct_yaml_str'}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'assignment', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '233', 'type': 'call', 'children': ['234', '240']}; {'id': '234', 'type': 'attribute', 'children': ['235', '239']}, {'id': '235', 'type': 'call', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'SafeLoader'}, {'id': '237', 'type': 'argument_list', 'children': ['238']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'config_file'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'get_data'}; {'id': '240', 'type': 'argument_list', 'children': []}, {'id': '241', 'type': 'if_statement', 'children': ['242', '245']}; {'id': '242', 'type': 'comparison_operator', 'children': ['243', '244'], 'value': 'is'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '244', 'type': 'None', 'children': []}, {'id': '245', 'type': 'block', 'children': ['246']}; {'id': '246', 'type': 'raise_statement', 'children': ['247']}, {'id': '247', 'type': 'call', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'AttributeError'}, {'id': '249', 'type': 'argument_list', 'children': ['250']}; {'id': '250', 'type': 'string', 'children': [], 'value': "'The configuration file needs to have data in it.'"}, {'id': '251', 'type': 'expression_statement', 'children': ['252']}; {'id': '252', 'type': 'assignment', 'children': ['253', '256']}, {'id': '253', 'type': 'attribute', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': '_data'}; {'id': '256', 'type': 'call', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'normalize_keys'}; {'id': '258', 'type': 'argument_list', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '260', 'type': 'keyword_argument', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'snake_case'}; {'id': '262', 'type': 'False', 'children': []}, {'id': '263', 'type': 'except_clause', 'children': ['264', '268']}; {'id': '264', 'type': 'as_pattern', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'YAMLError'}; {'id': '266', 'type': 'as_pattern_target', 'children': ['267']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '268', 'type': 'block', 'children': ['269']}, {'id': '269', 'type': 'if_statement', 'children': ['270', '275', '301']}; {'id': '270', 'type': 'call', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '272', 'type': 'argument_list', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '274', 'type': 'string', 'children': [], 'value': "'problem_mark'"}, {'id': '275', 'type': 'block', 'children': ['276', '282']}; {'id': '276', 'type': 'expression_statement', 'children': ['277']}, {'id': '277', 'type': 'assignment', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'mark'}, {'id': '279', 'type': 'attribute', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'problem_mark'}; {'id': '282', 'type': 'raise_statement', 'children': ['283']}, {'id': '283', 'type': 'call', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'}, {'id': '285', 'type': 'argument_list', 'children': ['286']}; {'id': '286', 'type': 'call', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'string', 'children': [], 'value': '"There is a syntax error in your freight-forwarder config file line: {0} column: {1}"'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '290', 'type': 'argument_list', 'children': ['291', '296']}, {'id': '291', 'type': 'binary_operator', 'children': ['292', '295'], 'value': '+'}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'mark'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '295', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '296', 'type': 'binary_operator', 'children': ['297', '300'], 'value': '+'}, {'id': '297', 'type': 'attribute', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'mark'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '300', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '301', 'type': 'else_clause', 'children': ['302']}; {'id': '302', 'type': 'block', 'children': ['303']}, {'id': '303', 'type': 'raise_statement', 'children': ['304']}; {'id': '304', 'type': 'call', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'}; {'id': '306', 'type': 'argument_list', 'children': ['307']}, {'id': '307', 'type': 'string', 'children': [], 'value': '"There is a syntax error in your freight-forwarder config."'} | def _load_yml_config(self, config_file):
if not isinstance(config_file, six.string_types):
raise TypeError('config_file must be a str.')
try:
def construct_yaml_int(self, node):
obj = SafeConstructor.construct_yaml_int(self, node)
data = ConfigInt(
obj,
node.start_mark,
node.end_mark
)
return data
def construct_yaml_float(self, node):
obj, = SafeConstructor.construct_yaml_float(self, node)
data = ConfigFloat(
obj,
node.start_mark,
node.end_mark
)
return data
def construct_yaml_str(self, node):
obj = SafeConstructor.construct_scalar(self, node)
assert isinstance(obj, six.string_types)
data = ConfigUnicode(
obj,
node.start_mark,
node.end_mark
)
return data
def construct_yaml_mapping(self, node):
obj, = SafeConstructor.construct_yaml_map(self, node)
data = ConfigDict(
obj,
node.start_mark,
node.end_mark
)
return data
def construct_yaml_seq(self, node):
obj, = SafeConstructor.construct_yaml_seq(self, node)
data = ConfigSeq(
obj,
node.start_mark,
node.end_mark
)
return data
SafeConstructor.add_constructor(u'tag:yaml.org,2002:float', construct_yaml_float)
SafeConstructor.add_constructor(u'tag:yaml.org,2002:int', construct_yaml_int)
SafeConstructor.add_constructor(u'tag:yaml.org,2002:map', construct_yaml_mapping)
SafeConstructor.add_constructor(u'tag:yaml.org,2002:seq', construct_yaml_seq)
SafeConstructor.add_constructor(u'tag:yaml.org,2002:str', construct_yaml_str)
data = SafeLoader(config_file).get_data()
if data is None:
raise AttributeError('The configuration file needs to have data in it.')
self._data = normalize_keys(data, snake_case=False)
except YAMLError as e:
if hasattr(e, 'problem_mark'):
mark = e.problem_mark
raise SyntaxError(
"There is a syntax error in your freight-forwarder config file line: {0} column: {1}".format(
mark.line + 1,
mark.column + 1
)
)
else:
raise SyntaxError("There is a syntax error in your freight-forwarder config.") |
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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'raise_statement', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'string', 'children': [], 'value': '"property_key must be a string. type: {0} was passed."'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'property_key'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '39']}, {'id': '33', 'type': 'not_operator', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'raise_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'string', 'children': [], 'value': '"ancestors must be an OrderedDict. type: {0} was passed."'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'previous_element'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'normalized_key'}; {'id': '60', 'type': 'call', 'children': ['61', '67']}, {'id': '61', 'type': 'attribute', 'children': ['62', '66']}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'normalize_value'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'property_key'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': "'-'"}, {'id': '69', 'type': 'string', 'children': [], 'value': "'_'"}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}, {'id': '73', 'type': 'None', 'children': []}; {'id': '74', 'type': 'if_statement', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'for_statement', 'children': ['78', '81', '87']}; {'id': '78', 'type': 'pattern_list', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'ancestor_key'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'ancestors_value'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '87', 'type': 'block', 'children': ['88', '101', '111', '151']}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}, {'id': '91', 'type': 'call', 'children': ['92', '98']}; {'id': '92', 'type': 'attribute', 'children': ['93', '97']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'normalize_value'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'ancestor_key'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'-'"}; {'id': '100', 'type': 'string', 'children': [], 'value': "'_'"}, {'id': '101', 'type': 'if_statement', 'children': ['102', '109']}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '108'], 'value': '=='}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '107', 'type': 'argument_list', 'children': []}; {'id': '108', 'type': 'string', 'children': [], 'value': "'root'"}, {'id': '109', 'type': 'block', 'children': ['110']}; {'id': '110', 'type': 'continue_statement', 'children': []}, {'id': '111', 'type': 'if_statement', 'children': ['112', '118']}; {'id': '112', 'type': 'not_operator', 'children': ['113']}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '115', 'type': 'argument_list', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'previous_element'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}; {'id': '118', 'type': 'block', 'children': ['119', '132', '138', '144']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'config_attr'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'ConfigDict'}; {'id': '124', 'type': 'argument_list', 'children': ['125', '126', '129']}, {'id': '125', 'type': 'dictionary', 'children': []}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'ancestors_value'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'start_mark'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'ancestors_value'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'end_mark'}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'config_attr'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'assignment', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'config_attr'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'alias'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'ancestor_key'}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'setattr'}, {'id': '147', 'type': 'argument_list', 'children': ['148', '149', '150']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'previous_element'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'config_attr'}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'assignment', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'previous_element'}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '156', 'type': 'argument_list', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'previous_element'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}, {'id': '159', 'type': 'if_statement', 'children': ['160', '163', '165']}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': '=='}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'normalized_key'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'normalized_ancestor_key'}, {'id': '163', 'type': 'block', 'children': ['164']}; {'id': '164', 'type': 'pass_statement', 'children': []}, {'id': '165', 'type': 'else_clause', 'children': ['166']}; {'id': '166', 'type': 'block', 'children': ['167', '186']}, {'id': '167', 'type': 'if_statement', 'children': ['168', '173']}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '170', 'type': 'argument_list', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'ConfigNode'}, {'id': '173', 'type': 'block', 'children': ['174', '180']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'normalized_key'}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'alias'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'property_key'}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'setattr'}, {'id': '189', 'type': 'argument_list', 'children': ['190', '191', '192']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'previous_element'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'normalized_key'} | def _create_attr(self, property_key, data, ancestors):
if not isinstance(property_key, six.string_types):
raise TypeError("property_key must be a string. type: {0} was passed.".format(type(property_key)))
if not isinstance(ancestors, OrderedDict):
raise TypeError("ancestors must be an OrderedDict. type: {0} was passed.".format(type(ancestors)))
previous_element = self
normalized_key = normalize_value(property_key).replace('-', '_')
normalized_ancestor_key = None
if ancestors:
for ancestor_key, ancestors_value in six.iteritems(ancestors):
normalized_ancestor_key = normalize_value(ancestor_key).replace('-', '_')
if normalized_ancestor_key.lower() == 'root':
continue
if not hasattr(previous_element, normalized_ancestor_key):
config_attr = ConfigDict({}, ancestors_value.start_mark, ancestors_value.end_mark)
config_attr.name = normalized_ancestor_key
config_attr.alias = ancestor_key
setattr(
previous_element,
normalized_ancestor_key,
config_attr
)
previous_element = getattr(previous_element, normalized_ancestor_key)
if normalized_key == normalized_ancestor_key:
pass
else:
if isinstance(data, ConfigNode):
data.name = normalized_key
data.alias = property_key
setattr(previous_element, normalized_key, data) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_collect_unrecognized_values'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '8', 'type': 'block', 'children': ['9', '30', '51', '55', '184']}, {'id': '9', 'type': 'if_statement', 'children': ['10', '16']}; {'id': '10', 'type': 'not_operator', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'raise_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'string', 'children': [], 'value': '"ancestors must be an OrderedDict. type: {0} was passed."'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '30', 'type': 'if_statement', 'children': ['31', '37']}, {'id': '31', 'type': 'not_operator', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'raise_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': "'scheme must be a dict. type: {0} was passed'"}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'unrecognized_values'}; {'id': '54', 'type': 'dictionary', 'children': []}, {'id': '55', 'type': 'if_statement', 'children': ['56', '61', '181']}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '61', 'type': 'block', 'children': ['62', '84', '107', '116']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'pruned_scheme'}, {'id': '65', 'type': 'list_comprehension', 'children': ['66', '67', '74']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '67', 'type': 'for_in_clause', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '73', 'type': 'argument_list', 'children': []}; {'id': '74', 'type': 'if_clause', 'children': ['75']}, {'id': '75', 'type': 'boolean_operator', 'children': ['76', '79'], 'value': 'and'}; {'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': 'not'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'RESERVED_SCHEME_KEYS'}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '83'], 'value': 'not'}; {'id': '80', 'type': 'subscript', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '82', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'RESERVED_SCHEME_KEYS'}; {'id': '84', 'type': 'for_statement', 'children': ['85', '88', '94']}, {'id': '85', 'type': 'pattern_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '94', 'type': 'block', 'children': ['95', '101']}, {'id': '95', 'type': 'if_statement', 'children': ['96', '99']}; {'id': '96', 'type': 'comparison_operator', 'children': ['97', '98'], 'value': 'in'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'pruned_scheme'}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'continue_statement', 'children': []}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '106']}, {'id': '103', 'type': 'subscript', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'unrecognized_values'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'validations'}; {'id': '110', 'type': 'call', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'string', 'children': [], 'value': "'is'"}; {'id': '116', 'type': 'if_statement', 'children': ['117', '122']}, {'id': '117', 'type': 'boolean_operator', 'children': ['118', '119'], 'value': 'and'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'validations'}, {'id': '119', 'type': 'comparison_operator', 'children': ['120', '121'], 'value': 'in'}; {'id': '120', 'type': 'string', 'children': [], 'value': "'one_of'"}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'validations'}; {'id': '122', 'type': 'block', 'children': ['123']}, {'id': '123', 'type': 'for_statement', 'children': ['124', '125', '128']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'nested_scheme'}, {'id': '125', 'type': 'subscript', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'validations'}, {'id': '127', 'type': 'string', 'children': [], 'value': "'one_of'"}; {'id': '128', 'type': 'block', 'children': ['129']}, {'id': '129', 'type': 'if_statement', 'children': ['130', '135']}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '132', 'type': 'argument_list', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'nested_scheme'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '135', 'type': 'block', 'children': ['136', '146', '168']}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'updated_scheme'}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': '_update_scheme'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'nested_scheme'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'pruned_scheme'}, {'id': '149', 'type': 'list_comprehension', 'children': ['150', '151', '158']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '151', 'type': 'for_in_clause', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'updated_scheme'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '157', 'type': 'argument_list', 'children': []}; {'id': '158', 'type': 'if_clause', 'children': ['159']}, {'id': '159', 'type': 'boolean_operator', 'children': ['160', '163'], 'value': 'and'}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': 'not'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'RESERVED_SCHEME_KEYS'}, {'id': '163', 'type': 'comparison_operator', 'children': ['164', '167'], 'value': 'not'}; {'id': '164', 'type': 'subscript', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '166', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'RESERVED_SCHEME_KEYS'}; {'id': '168', 'type': 'for_statement', 'children': ['169', '170', '171']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'pruned_scheme'}, {'id': '171', 'type': 'block', 'children': ['172']}; {'id': '172', 'type': 'if_statement', 'children': ['173', '176']}, {'id': '173', 'type': 'comparison_operator', 'children': ['174', '175'], 'value': 'in'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'unrecognized_values'}; {'id': '176', 'type': 'block', 'children': ['177']}, {'id': '177', 'type': 'delete_statement', 'children': ['178']}; {'id': '178', 'type': 'subscript', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'unrecognized_values'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '181', 'type': 'else_clause', 'children': ['182']}; {'id': '182', 'type': 'block', 'children': ['183']}, {'id': '183', 'type': 'pass_statement', 'children': []}; {'id': '184', 'type': 'return_statement', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'unrecognized_values'} | def _collect_unrecognized_values(self, scheme, data, ancestors):
if not isinstance(ancestors, OrderedDict):
raise TypeError("ancestors must be an OrderedDict. type: {0} was passed.".format(type(ancestors)))
if not isinstance(scheme, dict):
raise TypeError('scheme must be a dict. type: {0} was passed'.format(type(scheme)))
unrecognized_values = {}
if isinstance(data, dict):
pruned_scheme = [key for key in scheme.keys() if key not in RESERVED_SCHEME_KEYS and key[0] not in RESERVED_SCHEME_KEYS]
for key, value in six.iteritems(data):
if key in pruned_scheme:
continue
unrecognized_values[key] = value
validations = scheme.get('is')
if validations and 'one_of' in validations:
for nested_scheme in validations['one_of']:
if isinstance(nested_scheme, dict):
updated_scheme = self._update_scheme(nested_scheme, ancestors)
pruned_scheme = [key for key in updated_scheme.keys() if key not in RESERVED_SCHEME_KEYS and key[0] not in RESERVED_SCHEME_KEYS]
for key in pruned_scheme:
if key in unrecognized_values:
del unrecognized_values[key]
else:
pass
return unrecognized_values |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_update_scheme'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '7', 'type': 'block', 'children': ['8', '29', '50', '59', '74', '78', '221', '228']}; {'id': '8', 'type': 'if_statement', 'children': ['9', '15']}, {'id': '9', 'type': 'not_operator', 'children': ['10']}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'raise_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': '"ancestors must be an OrderedDict. type: {0} was passed."'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '29', 'type': 'if_statement', 'children': ['30', '36']}; {'id': '30', 'type': 'not_operator', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'raise_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'string', 'children': [], 'value': "'scheme must be a dict. type: {0} was passed'"}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'definitions'}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'ROOT_SCHEME'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'string', 'children': [], 'value': "'_'"}, {'id': '59', 'type': 'if_statement', 'children': ['60', '63']}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': 'in'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'inherit'"}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': '_scheme_propagation'}, {'id': '71', 'type': 'argument_list', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'definitions'}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'updated_scheme'}, {'id': '77', 'type': 'dictionary', 'children': []}; {'id': '78', 'type': 'for_statement', 'children': ['79', '80', '86']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'iterkeys'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '86', 'type': 'block', 'children': ['87', '107']}, {'id': '87', 'type': 'if_statement', 'children': ['88', '96']}; {'id': '88', 'type': 'not_operator', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '96', 'type': 'block', 'children': ['97']}, {'id': '97', 'type': 'raise_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'string', 'children': [], 'value': "'scheme keys are required to be strings. type: {0} was passed.'"}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '105', 'type': 'argument_list', 'children': ['106']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '107', 'type': 'if_statement', 'children': ['108', '111', '169']}; {'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': 'in'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'@'"}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '111', 'type': 'block', 'children': ['112', '120', '131', '144']}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '115', 'type': 'subscript', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '117', 'type': 'slice', 'children': ['118', '119']}; {'id': '118', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '119', 'type': 'colon', 'children': []}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'assignment', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}, {'id': '123', 'type': 'call', 'children': ['124', '129']}; {'id': '124', 'type': 'attribute', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': '_scheme_references'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '131', 'type': 'if_statement', 'children': ['132', '134']}; {'id': '132', 'type': 'not_operator', 'children': ['133']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'raise_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'ConfigValidationException'}; {'id': '138', 'type': 'argument_list', 'children': ['139', '140', '141', '142', '143']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}; {'id': '142', 'type': 'string', 'children': [], 'value': "'required'"}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '144', 'type': 'for_statement', 'children': ['145', '146', '149']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'reference_key'}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}; {'id': '148', 'type': 'string', 'children': [], 'value': "'keys'"}, {'id': '149', 'type': 'block', 'children': ['150', '161']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '157']}; {'id': '152', 'type': 'attribute', 'children': ['153', '156']}, {'id': '153', 'type': 'subscript', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}, {'id': '155', 'type': 'string', 'children': [], 'value': "'scheme'"}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'subscript', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '166']}, {'id': '163', 'type': 'subscript', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'updated_scheme'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'reference_key'}; {'id': '166', 'type': 'subscript', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}; {'id': '168', 'type': 'string', 'children': [], 'value': "'scheme'"}, {'id': '169', 'type': 'elif_clause', 'children': ['170', '173']}; {'id': '170', 'type': 'comparison_operator', 'children': ['171', '172'], 'value': 'in'}, {'id': '171', 'type': 'string', 'children': [], 'value': "'~'"}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '173', 'type': 'block', 'children': ['174', '182', '193', '207']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '177', 'type': 'subscript', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '179', 'type': 'slice', 'children': ['180', '181']}; {'id': '180', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '181', 'type': 'colon', 'children': []}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}, {'id': '185', 'type': 'call', 'children': ['186', '191']}; {'id': '186', 'type': 'attribute', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': '_scheme_references'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '193', 'type': 'if_statement', 'children': ['194', '196']}; {'id': '194', 'type': 'not_operator', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}; {'id': '196', 'type': 'block', 'children': ['197']}, {'id': '197', 'type': 'raise_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'LookupError'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '205']}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'string', 'children': [], 'value': '"was unable to find {0} in scheme reference."'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '205', 'type': 'argument_list', 'children': ['206']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '207', 'type': 'for_statement', 'children': ['208', '209', '212']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'reference_key'}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'scheme_reference'}, {'id': '211', 'type': 'string', 'children': [], 'value': "'keys'"}; {'id': '212', 'type': 'block', 'children': ['213']}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '218']}, {'id': '215', 'type': 'subscript', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'updated_scheme'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'reference_key'}; {'id': '218', 'type': 'subscript', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'scheme_key'}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'call', 'children': ['223', '226']}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '226', 'type': 'argument_list', 'children': ['227']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'updated_scheme'}; {'id': '228', 'type': 'return_statement', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'scheme'} | def _update_scheme(self, scheme, ancestors):
if not isinstance(ancestors, OrderedDict):
raise TypeError("ancestors must be an OrderedDict. type: {0} was passed.".format(type(ancestors)))
if not isinstance(scheme, dict):
raise TypeError('scheme must be a dict. type: {0} was passed'.format(type(scheme)))
definitions = ROOT_SCHEME.get('_')
if 'inherit' in scheme:
scheme = self._scheme_propagation(scheme, definitions)
updated_scheme = {}
for scheme_key in six.iterkeys(scheme):
if not isinstance(scheme_key, six.string_types):
raise TypeError('scheme keys are required to be strings. type: {0} was passed.'.format(scheme_key))
if '@' in scheme_key:
ref = scheme_key[1:]
scheme_reference = self._scheme_references.get(ref)
if not scheme_reference:
raise ConfigValidationException(ancestors, ref, scheme_reference, 'required', scheme)
for reference_key in scheme_reference['keys']:
scheme_reference['scheme'].update(scheme[scheme_key])
updated_scheme[reference_key] = scheme_reference['scheme']
elif '~' in scheme_key:
ref = scheme_key[1:]
scheme_reference = self._scheme_references.get(ref)
if not scheme_reference:
raise LookupError("was unable to find {0} in scheme reference.".format(ref))
for reference_key in scheme_reference['keys']:
updated_scheme[reference_key] = scheme[scheme_key]
scheme.update(updated_scheme)
return scheme |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_walk_tree'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '12', 'type': 'None', 'children': []}, {'id': '13', 'type': 'default_parameter', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '15', 'type': 'None', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17', '73', '94', '105', '142', '163', '173', '207', '244', '254', '262']}, {'id': '17', 'type': 'if_statement', 'children': ['18', '21']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'is'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '26', '46']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'property_name'}, {'id': '25', 'type': 'string', 'children': [], 'value': "'root'"}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '29', 'type': 'binary_operator', 'children': ['30', '32'], 'value': '+'}; {'id': '30', 'type': 'list', 'children': ['31'], 'value': "['registries']"}, {'id': '31', 'type': 'string', 'children': [], 'value': "'registries'"}; {'id': '32', 'type': 'list_comprehension', 'children': ['33', '34', '41']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '34', 'type': 'for_in_clause', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '40', 'type': 'argument_list', 'children': []}, {'id': '41', 'type': 'if_clause', 'children': ['42']}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': 'not'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '44', 'type': 'tuple', 'children': ['45']}, {'id': '45', 'type': 'string', 'children': [], 'value': "'registries'"}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '60']}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '59', 'type': 'argument_list', 'children': []}; {'id': '60', 'type': 'keyword_argument', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '62', 'type': 'lambda', 'children': ['63', '65']}, {'id': '63', 'type': 'lambda_parameters', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'subscript', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '72', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '73', 'type': 'if_statement', 'children': ['74', '77', '79']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': 'is'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '76', 'type': 'None', 'children': []}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'return_statement', 'children': []}, {'id': '79', 'type': 'elif_clause', 'children': ['80', '88']}; {'id': '80', 'type': 'not_operator', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'property_name'}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'raise_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'string', 'children': [], 'value': "'property_name must be a string.'"}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': '_update_ancestors'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '103', '104']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '111', '127']}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '111', 'type': 'block', 'children': ['112']}; {'id': '112', 'type': 'if_statement', 'children': ['113', '121']}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '120'], 'value': '!='}; {'id': '114', 'type': 'subscript', 'children': ['115', '119']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '119', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '120', 'type': 'string', 'children': [], 'value': "'root'"}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'raise_statement', 'children': ['123']}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'LookupError'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'string', 'children': [], 'value': "'root must be the first item in ancestors.'"}, {'id': '127', 'type': 'else_clause', 'children': ['128']}; {'id': '128', 'type': 'block', 'children': ['129']}, {'id': '129', 'type': 'raise_statement', 'children': ['130']}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'TypeError'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'string', 'children': [], 'value': "'ancestors must be an OrderedDict. {0} was passed'"}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '149']}, {'id': '143', 'type': 'not_operator', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '146', 'type': 'argument_list', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'raise_statement', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'string', 'children': [], 'value': "'scheme must be a dict. {0} was passed.'"}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'call', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': '_update_scheme'}; {'id': '170', 'type': 'argument_list', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '173', 'type': 'if_statement', 'children': ['174', '179']}; {'id': '174', 'type': 'boolean_operator', 'children': ['175', '178'], 'value': 'and'}, {'id': '175', 'type': 'comparison_operator', 'children': ['176', '177'], 'value': 'is'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'property_name'}, {'id': '177', 'type': 'None', 'children': []}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '179', 'type': 'block', 'children': ['180']}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '183', 'type': 'conditional_expression', 'children': ['184', '199', '206'], 'value': 'if'}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': '_get_cascading_attr'}; {'id': '188', 'type': 'argument_list', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '190', 'type': 'list_splat', 'children': ['191']}, {'id': '191', 'type': 'subscript', 'children': ['192', '196']}; {'id': '192', 'type': 'call', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '196', 'type': 'slice', 'children': ['197', '198']}, {'id': '197', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '198', 'type': 'colon', 'children': []}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'scheme'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '203', 'type': 'argument_list', 'children': ['204', '205']}; {'id': '204', 'type': 'string', 'children': [], 'value': "'cascading'"}, {'id': '205', 'type': 'False', 'children': []}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '207', 'type': 'for_statement', 'children': ['208', '209', '227']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '209', 'type': 'call', 'children': ['210', '213']}; {'id': '210', 'type': 'attribute', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': '__execute_validations'}, {'id': '213', 'type': 'argument_list', 'children': ['214', '221', '222', '223', '224']}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '218', 'type': 'argument_list', 'children': ['219', '220']}, {'id': '219', 'type': 'string', 'children': [], 'value': "'is'"}; {'id': '220', 'type': 'dictionary', 'children': []}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'property_name'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '224', 'type': 'keyword_argument', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'if_statement', 'children': ['229', '230', '233']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '230', 'type': 'block', 'children': ['231']}, {'id': '231', 'type': 'raise_statement', 'children': ['232']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '233', 'type': 'else_clause', 'children': ['234']}; {'id': '234', 'type': 'block', 'children': ['235']}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': '_create_attr'}; {'id': '240', 'type': 'argument_list', 'children': ['241', '242', '243']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'call', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': '__validate_unrecognized_values'}, {'id': '249', 'type': 'argument_list', 'children': ['250', '251', '252', '253']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': '__populate_scheme_references'}, {'id': '259', 'type': 'argument_list', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '262', 'type': 'expression_statement', 'children': ['263']}, {'id': '263', 'type': 'call', 'children': ['264', '267']}; {'id': '264', 'type': 'attribute', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': '__validate_config_properties'}, {'id': '267', 'type': 'argument_list', 'children': ['268', '269', '270', '271']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'scheme'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'prefix'} | def _walk_tree(self, data, scheme, ancestors=None, property_name=None, prefix=None):
if property_name is None:
property_name = 'root'
order = ['registries'] + [key for key in scheme.keys() if key not in ('registries',)]
scheme = OrderedDict(sorted(scheme.items(), key=lambda x: order.index(x[0])))
if data is None:
return
elif not isinstance(property_name, six.string_types):
raise TypeError('property_name must be a string.')
ancestors = self._update_ancestors(data, property_name, ancestors)
if isinstance(ancestors, OrderedDict):
if list(ancestors)[0] != 'root':
raise LookupError('root must be the first item in ancestors.')
else:
raise TypeError('ancestors must be an OrderedDict. {0} was passed'.format(type(ancestors)))
if not isinstance(scheme, dict):
raise TypeError('scheme must be a dict. {0} was passed.'.format(type(scheme)))
scheme = self._update_scheme(scheme, ancestors)
if property_name is not None and data:
data = self._get_cascading_attr(
property_name, *list(ancestors)[1:]
) if scheme.get('cascading', False) else data
for err in self.__execute_validations(scheme.get('is', {}), data, property_name, ancestors, prefix=prefix):
if err:
raise err
else:
self._create_attr(property_name, data, ancestors)
self.__validate_unrecognized_values(scheme, data, ancestors, prefix)
self.__populate_scheme_references(scheme, property_name)
self.__validate_config_properties(scheme, data, ancestors, prefix) |
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{'id': '16', 'type': 'if_statement', 'children': ['17', '23']}, {'id': '17', 'type': 'not_operator', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'raise_statement', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': '"ancestors must be an OrderedDict. type: {0} was passed."'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'format'}; 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{'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'string', 'children': [], 'value': "'validations is required to be a dict. type: {1} was passed.'"}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'validations'}; {'id': '58', 'type': 'if_statement', 'children': ['59', '67']}, {'id': '59', 'type': 'not_operator', 'children': ['60']}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'string_types'}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'raise_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'string', 'children': [], 'value': '"property_key must be a string. type: {0} was passed."'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'property_name'}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'assignment', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '84', 'type': 'binary_operator', 'children': ['85', '88'], 'value': '+'}, {'id': '85', 'type': 'list', 'children': ['86', '87'], 'value': "['type', 'required']"}; {'id': '86', 'type': 'string', 'children': [], 'value': "'type'"}, {'id': '87', 'type': 'string', 'children': [], 'value': "'required'"}; {'id': '88', 'type': 'list_comprehension', 'children': ['89', '90', '97']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '90', 'type': 'for_in_clause', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'validations'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '96', 'type': 'argument_list', 'children': []}, {'id': '97', 'type': 'if_clause', 'children': ['98']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'not'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '100', 'type': 'tuple', 'children': ['101', '102']}, {'id': '101', 'type': 'string', 'children': [], 'value': "'required'"}; {'id': '102', 'type': 'string', 'children': [], 'value': "'type'"}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'ordered_validations'}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '111', 'type': 'argument_list', 'children': ['112', '117']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'validations'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '116', 'type': 'argument_list', 'children': []}, {'id': '117', 'type': 'keyword_argument', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '119', 'type': 'lambda', 'children': ['120', '122']}; {'id': '120', 'type': 'lambda_parameters', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'subscript', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '129', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '130', 'type': 'for_statement', 'children': ['131', '134', '140']}, {'id': '131', 'type': 'pattern_list', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'validation'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '134', 'type': 'call', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'ordered_validations'}; {'id': '140', 'type': 'block', 'children': ['141']}, {'id': '141', 'type': 'if_statement', 'children': ['142', '145', '193']}; {'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': 'in'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'validation'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'VALIDATORS'}, {'id': '145', 'type': 'block', 'children': ['146', '169']}; {'id': '146', 'type': 'if_statement', 'children': ['147', '150']}, {'id': '147', 'type': 'comparison_operator', 'children': ['148', '149'], 'value': '=='}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'validation'}, {'id': '149', 'type': 'string', 'children': [], 'value': "'not'"}; {'id': '150', 'type': 'block', 'children': ['151', '168']}, {'id': '151', 'type': 'for_statement', 'children': ['152', '153', '164']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': '__execute_validations'}, {'id': '157', 'type': 'argument_list', 'children': ['158', '159', '160', '161', '162', '163']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'property_name'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'ancestors'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'negation'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '164', 'type': 'block', 'children': ['165']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'yield', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '168', 'type': 'continue_statement', 'children': []}, {'id': '169', 'type': 'for_statement', 'children': ['170', '171', '189']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '171', 'type': 'call', 'children': ['172', '182']}; {'id': '172', 'type': 'call', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '176', 'type': 'call', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'string', 'children': [], 'value': "'_{0}'"}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'validation'}; {'id': '182', 'type': 'argument_list', 'children': ['183', '184', '185', '186', '187', '188']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'property_name'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'ancestors'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'negation'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'yield', 'children': ['192']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '193', 'type': 'else_clause', 'children': ['194']}; {'id': '194', 'type': 'block', 'children': ['195']}, {'id': '195', 'type': 'raise_statement', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'LookupError'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'string', 'children': [], 'value': '"{0} isn\'t a validator or reserved scheme key."'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '203', 'type': 'argument_list', 'children': ['204']} | def __execute_validations(self, validations, data, property_name, ancestors, negation=False, prefix=None):
if not isinstance(ancestors, OrderedDict):
raise TypeError("ancestors must be an OrderedDict. type: {0} was passed.".format(type(ancestors)))
if not isinstance(validations, dict):
raise TypeError('validations is required to be a dict. type: {1} was passed.'.format(type(validations)))
if not isinstance(property_name, six.string_types):
raise TypeError("property_key must be a string. type: {0} was passed.".format(type(property_name)))
order = ['type', 'required'] + [key for key in validations.keys() if key not in ('required', 'type')]
ordered_validations = OrderedDict(sorted(validations.items(), key=lambda x: order.index(x[0])))
for validation, value in six.iteritems(ordered_validations):
if validation in VALIDATORS:
if validation == 'not':
for err in self.__execute_validations(value, data, property_name, ancestors, negation, prefix):
yield err
continue
for err in getattr(self, '_{0}'.format(validation))(value, data, property_name, ancestors, negation, prefix):
yield err
else:
raise LookupError("{0} isn't a validator or reserved scheme key.".format(validation)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'users_feature'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '5', 'type': 'block', 'children': ['6', '25', '33', '40', '47', '53', '59', '76', '83', '90', '98', '136', '143', '184']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '17']}, {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '14']}, {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'string', 'children': [], 'value': "'USER_JWT_SECRET'"}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'raise_statement', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'JwtSecretMissing'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'Please set USER_JWT_SECRET in config'"}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'session_interface'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'BoilerSessionInterface'}; {'id': '32', 'type': 'argument_list', 'children': []}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'user_service'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'init'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'login_manager'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'init_app'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'login_manager'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'login_view'}; {'id': '52', 'type': 'string', 'children': [], 'value': "'user.login'"}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'login_manager'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'login_message'}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'decorated_definition', 'children': ['60', '64']}; {'id': '60', 'type': 'decorator', 'children': ['61']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'login_manager'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'user_loader'}; {'id': '64', 'type': 'function_definition', 'children': ['65', '66', '68']}, {'id': '65', 'type': 'function_name', 'children': [], 'value': 'load_user'}; {'id': '66', 'type': 'parameters', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'return_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'user_service'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'oauth'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'init_app'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'registry'}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'OauthProviders'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'providers'}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'registry'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'get_providers'}, {'id': '97', 'type': 'argument_list', 'children': []}; {'id': '98', 'type': 'with_statement', 'children': ['99', '106']}, {'id': '99', 'type': 'with_clause', 'children': ['100']}; {'id': '100', 'type': 'with_item', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'app_context'}, {'id': '105', 'type': 'argument_list', 'children': []}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'for_statement', 'children': ['108', '109', '110']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'providers'}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'if_statement', 'children': ['112', '117']}; {'id': '112', 'type': 'comparison_operator', 'children': ['113', '114'], 'value': 'not'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'oauth'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'remote_apps'}, {'id': '117', 'type': 'block', 'children': ['118', '129']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'oauth'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'remote_app'}, {'id': '123', 'type': 'argument_list', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '125', 'type': 'dictionary_splat', 'children': ['126']}; {'id': '126', 'type': 'subscript', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'providers'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'registry'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'register_token_getter'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'principal'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'init_app'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '143', 'type': 'decorated_definition', 'children': ['144', '148']}; {'id': '144', 'type': 'decorator', 'children': ['145']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'principal'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'identity_loader'}; {'id': '148', 'type': 'function_definition', 'children': ['149', '150', '151']}, {'id': '149', 'type': 'function_name', 'children': [], 'value': 'load_identity'}; {'id': '150', 'type': 'parameters', 'children': []}, {'id': '151', 'type': 'block', 'children': ['152', '164', '172', '180']}; {'id': '152', 'type': 'if_statement', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'current_user'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'return_statement', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'Identity'}; {'id': '160', 'type': 'argument_list', 'children': ['161']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'current_user'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'call', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '169', 'type': 'argument_list', 'children': ['170', '171']}; {'id': '170', 'type': 'string', 'children': [], 'value': "'identity.name'"}, {'id': '171', 'type': 'None', 'children': []}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'session'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '177', 'type': 'argument_list', 'children': ['178', '179']}; {'id': '178', 'type': 'string', 'children': [], 'value': "'identity.auth_type'"}, {'id': '179', 'type': 'None', 'children': []}; {'id': '180', 'type': 'return_statement', 'children': ['181']}, {'id': '181', 'type': 'call', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'AnonymousIdentity'}, {'id': '183', 'type': 'argument_list', 'children': []}; {'id': '184', 'type': 'decorated_definition', 'children': ['185', '192']}, {'id': '185', 'type': 'decorator', 'children': ['186']}; {'id': '186', 'type': 'call', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'identity_loaded'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'connect_via'}; {'id': '190', 'type': 'argument_list', 'children': ['191']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '192', 'type': 'function_definition', 'children': ['193', '194', '197']}, {'id': '193', 'type': 'function_name', 'children': [], 'value': 'on_identity_loaded'}; {'id': '194', 'type': 'parameters', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'sender'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'identity'}, {'id': '197', 'type': 'block', 'children': ['198', '204', '211', '225']}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'assignment', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'identity'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'current_user'}; {'id': '204', 'type': 'if_statement', 'children': ['205', '209']}, {'id': '205', 'type': 'not_operator', 'children': ['206']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'current_user'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'}, {'id': '209', 'type': 'block', 'children': ['210']}; {'id': '210', 'type': 'return_statement', 'children': []}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'call', 'children': ['213', '218']}, {'id': '213', 'type': 'attribute', 'children': ['214', '217']}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'identity'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'provides'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '218', 'type': 'argument_list', 'children': ['219']}, {'id': '219', 'type': 'call', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'UserNeed'}, {'id': '221', 'type': 'argument_list', 'children': ['222']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'current_user'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '225', 'type': 'for_statement', 'children': ['226', '227', '230']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'role'}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'current_user'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'roles'}; {'id': '230', 'type': 'block', 'children': ['231']}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'call', 'children': ['233', '238']}, {'id': '233', 'type': 'attribute', 'children': ['234', '237']}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'identity'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'provides'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '238', 'type': 'argument_list', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'RoleNeed'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'role'} | def users_feature(app):
if not app.config.get('USER_JWT_SECRET', None):
raise x.JwtSecretMissing('Please set USER_JWT_SECRET in config')
app.session_interface = BoilerSessionInterface()
user_service.init(app)
login_manager.init_app(app)
login_manager.login_view = 'user.login'
login_manager.login_message = None
@login_manager.user_loader
def load_user(id):
return user_service.get(id)
oauth.init_app(app)
registry = OauthProviders(app)
providers = registry.get_providers()
with app.app_context():
for provider in providers:
if provider not in oauth.remote_apps:
oauth.remote_app(provider, **providers[provider])
registry.register_token_getter(provider)
principal.init_app(app)
@principal.identity_loader
def load_identity():
if current_user.is_authenticated:
return Identity(current_user.id)
session.pop('identity.name', None)
session.pop('identity.auth_type', None)
return AnonymousIdentity()
@identity_loaded.connect_via(app)
def on_identity_loaded(sender, identity):
identity.user = current_user
if not current_user.is_authenticated:
return
identity.provides.add(UserNeed(current_user.id))
for role in current_user.roles:
identity.provides.add(RoleNeed(role.handle)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'match'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '6', 'type': 'block', 'children': ['7', '9', '16']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'string', 'children': [], 'value': "''' This is a noisy terminal-printing function at present since there is no need to make it a proper API function.'''"}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'colortext'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'string', 'children': [], 'value': '"FASTA Match"'}; {'id': '16', 'type': 'for_statement', 'children': ['17', '20', '28']}, {'id': '17', 'type': 'pattern_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'frompdbID'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'fromchains'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'block', 'children': ['29', '33', '37', '118', '122', '134', '177']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'matched_pdbs'}; {'id': '32', 'type': 'dictionary', 'children': []}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'matched_chains'}; {'id': '36', 'type': 'dictionary', 'children': []}, {'id': '37', 'type': 'for_statement', 'children': ['38', '41', '46']}; {'id': '38', 'type': 'pattern_list', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'fromchain'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'fromsequence'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'fromchains'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '45', 'type': 'argument_list', 'children': []}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'for_statement', 'children': ['48', '51', '56']}; {'id': '48', 'type': 'pattern_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'topdbID'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'tochains'}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '55', 'type': 'argument_list', 'children': []}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'for_statement', 'children': ['58', '61', '66']}; {'id': '58', 'type': 'pattern_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'tochain'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'tosequence'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'tochains'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '65', 'type': 'argument_list', 'children': []}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'if_statement', 'children': ['68', '71']}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': '=='}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'fromsequence'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'tosequence'}, {'id': '71', 'type': 'block', 'children': ['72', '86', '95', '107']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '77']}; {'id': '74', 'type': 'subscript', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'matched_pdbs'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'topdbID'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'matched_pdbs'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'topdbID'}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '85', 'type': 'argument_list', 'children': []}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '93']}; {'id': '88', 'type': 'attribute', 'children': ['89', '92']}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'matched_pdbs'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'topdbID'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'fromchain'}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '100']}, {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'matched_chains'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'fromchain'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'matched_chains'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'fromchain'}; {'id': '106', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'call', 'children': ['109', '114']}, {'id': '109', 'type': 'attribute', 'children': ['110', '113']}; {'id': '110', 'type': 'subscript', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'matched_chains'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'fromchain'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'tuple', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'topdbID'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'tochain'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'foundmatches'}, {'id': '121', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'colortext'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'printf'}, {'id': '127', 'type': 'argument_list', 'children': ['128', '131']}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '130'], 'value': '%'}, {'id': '129', 'type': 'string', 'children': [], 'value': '" %s"'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'frompdbID'}, {'id': '131', 'type': 'keyword_argument', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'color'}, {'id': '133', 'type': 'string', 'children': [], 'value': '"silver"'}; {'id': '134', 'type': 'for_statement', 'children': ['135', '138', '143']}, {'id': '135', 'type': 'pattern_list', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'mpdbID'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'mchains'}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'matched_pdbs'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '142', 'type': 'argument_list', 'children': []}, {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'if_statement', 'children': ['145', '155']}, {'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': '=='}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'mchains'}, {'id': '147', 'type': 'call', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'fromchains'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '154', 'type': 'argument_list', 'children': []}, {'id': '155', 'type': 'block', 'children': ['156', '163']}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'foundmatches'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '161', 'type': 'argument_list', 'children': ['162']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'mpdbID'}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'colortext'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'printf'}; {'id': '168', 'type': 'argument_list', 'children': ['169', '174']}, {'id': '169', 'type': 'binary_operator', 'children': ['170', '171'], 'value': '%'}; {'id': '170', 'type': 'string', 'children': [], 'value': '" PDB %s matched PDB %s on all chains"'}, {'id': '171', 'type': 'tuple', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'mpdbID'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'frompdbID'}; {'id': '174', 'type': 'keyword_argument', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '176', 'type': 'string', 'children': [], 'value': '"white"'}, {'id': '177', 'type': 'if_statement', 'children': ['178', '179', '266']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'foundmatches'}, {'id': '179', 'type': 'block', 'children': ['180']}; {'id': '180', 'type': 'for_statement', 'children': ['181', '184', '189']}, {'id': '181', 'type': 'pattern_list', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'fromchain'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'fromsequence'}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'fromchains'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '188', 'type': 'argument_list', 'children': []}, {'id': '189', 'type': 'block', 'children': ['190', '203', '220', '224', '252']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'colortext'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'printf'}, {'id': '195', 'type': 'argument_list', 'children': ['196', '200']}; {'id': '196', 'type': 'binary_operator', 'children': ['197', '198'], 'value': '%'}, {'id': '197', 'type': 'string', 'children': [], 'value': '" %s"'}; {'id': '198', 'type': 'parenthesized_expression', 'children': ['199']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'fromchain'}; {'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '202', 'type': 'string', 'children': [], 'value': '"silver"'}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'colortext'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'printf'}; {'id': '208', 'type': 'argument_list', 'children': ['209', '213']}, {'id': '209', 'type': 'binary_operator', 'children': ['210', '211'], 'value': '%'}; {'id': '210', 'type': 'string', 'children': [], 'value': '" %s"'}, {'id': '211', 'type': 'parenthesized_expression', 'children': ['212']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'fromsequence'}, {'id': '213', 'type': 'keyword_argument', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'color'}, {'id': '215', 'type': 'subscript', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'unique_sequences'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'fromsequence'}; {'id': '220', 'type': 'expression_statement', 'children': ['221']}, {'id': '221', 'type': 'assignment', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'mstr'}, {'id': '223', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '224', 'type': 'for_statement', 'children': ['225', '226', '229']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'mchain'}; {'id': '226', 'type': 'subscript', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'matched_chains'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'fromchain'}, {'id': '229', 'type': 'block', 'children': ['230']}; {'id': '230', 'type': 'if_statement', 'children': ['231', '236']}, {'id': '231', 'type': 'comparison_operator', 'children': ['232', '235'], 'value': 'in'}; {'id': '232', 'type': 'subscript', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'mchain'}; {'id': '234', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'foundmatches'}; {'id': '236', 'type': 'block', 'children': ['237']}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '242']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'mstr'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '242', 'type': 'argument_list', 'children': ['243']}, {'id': '243', 'type': 'binary_operator', 'children': ['244', '245'], 'value': '%'}; {'id': '244', 'type': 'string', 'children': [], 'value': '"%s chain %s"'}, {'id': '245', 'type': 'tuple', 'children': ['246', '249']}; {'id': '246', 'type': 'subscript', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'mchain'}; {'id': '248', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '249', 'type': 'subscript', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'mchain'}, {'id': '251', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '252', 'type': 'expression_statement', 'children': ['253']}, {'id': '253', 'type': 'call', 'children': ['254', '257']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'colortext'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'printf'}, {'id': '257', 'type': 'argument_list', 'children': ['258']}; {'id': '258', 'type': 'binary_operator', 'children': ['259', '260'], 'value': '%'}, {'id': '259', 'type': 'string', 'children': [], 'value': '"\t Matches: %s"'}; {'id': '260', 'type': 'call', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'string', 'children': [], 'value': '", "'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'mstr'}; {'id': '266', 'type': 'else_clause', 'children': ['267']}, {'id': '267', 'type': 'block', 'children': ['268']}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'call', 'children': ['270', '273']}; {'id': '270', 'type': 'attribute', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'colortext'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '273', 'type': 'argument_list', 'children': ['274']} | def match(self, other):
''' This is a noisy terminal-printing function at present since there is no need to make it a proper API function.'''
colortext.message("FASTA Match")
for frompdbID, fromchains in sorted(self.iteritems()):
matched_pdbs = {}
matched_chains = {}
for fromchain, fromsequence in fromchains.iteritems():
for topdbID, tochains in other.iteritems():
for tochain, tosequence in tochains.iteritems():
if fromsequence == tosequence:
matched_pdbs[topdbID] = matched_pdbs.get(topdbID, set())
matched_pdbs[topdbID].add(fromchain)
matched_chains[fromchain] = matched_chains.get(fromchain, [])
matched_chains[fromchain].append((topdbID, tochain))
foundmatches = []
colortext.printf(" %s" % frompdbID, color="silver")
for mpdbID, mchains in matched_pdbs.iteritems():
if mchains == set(fromchains.keys()):
foundmatches.append(mpdbID)
colortext.printf(" PDB %s matched PDB %s on all chains" % (mpdbID, frompdbID), color="white")
if foundmatches:
for fromchain, fromsequence in fromchains.iteritems():
colortext.printf(" %s" % (fromchain), color = "silver")
colortext.printf(" %s" % (fromsequence), color = self.unique_sequences[fromsequence])
mstr = []
for mchain in matched_chains[fromchain]:
if mchain[0] in foundmatches:
mstr.append("%s chain %s" % (mchain[0], mchain[1]))
colortext.printf(" Matches: %s" % ", ".join(mstr))
else:
colortext.error(" No matches found.") |
{'id': '0', 'type': 'ERROR', 'children': ['1', '2', '7', '9', '15', '19', '26', '33', '36', '37', '40', '46', '48', '49', '50', '51', '54', '55', '56', '57', '60', '61', '62', '63', '69', '72', '82', '86', '91', '101', '116', '126', '131', '171', '179', '211', '214', '215', '219', '222', '223', '226', '227', '230', '233', '252', '256', '259', '276', '280', '283']}, {'id': '1', 'type': 'identifier', 'children': [], 'value': 'generateSummaryHTMLTable'}; {'id': '2', 'type': 'parameters', 'children': ['3', '4']}, {'id': '3', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'extraLapse'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'TYPICAL_LAPSE'}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'string', 'children': [], 'value': "'''Generates a summary in HTML of the status of the expected scripts broken based on the log.\n\t\t\tThis summary is returned as a list of strings. \n\t\t'''"}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'scriptsRun'}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'scriptsRun'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '18', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'html'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'string', 'children': [], 'value': '"<table style=\'text-align:center;border:1px solid black;margin-left: auto;margin-right: auto;\'>\\n"'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'string', 'children': [], 'value': '\'\t<tr><td colspan="4" style="text-align:center"></td></tr>\\n\''}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'html'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'"}, {'id': '37', 'type': 'ERROR', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'tr'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'style'}; {'id': '40', 'type': 'binary_operator', 'children': ['41', '42', '45'], 'value': '-'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'font'}; {'id': '42', 'type': 'ERROR', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'weight'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'bold'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'background'}; {'id': '46', 'type': 'ERROR', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'tablestyle'}, {'id': '49', 'type': 'ERROR', 'children': []}; {'id': '50', 'type': 'ERROR', 'children': []}, {'id': '51', 'type': 'binary_operator', 'children': ['52', '53'], 'value': '-'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'background'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'warningstyle'}, {'id': '55', 'type': 'ERROR', 'children': []}; {'id': '56', 'type': 'ERROR', 'children': []}, {'id': '57', 'type': 'binary_operator', 'children': ['58', '59'], 'value': '-'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'background'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'color'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'failstyle'}, {'id': '61', 'type': 'ERROR', 'children': []}; {'id': '62', 'type': 'ERROR', 'children': []}, {'id': '63', 'type': 'slice', 'children': ['64', '67', '68']}; {'id': '64', 'type': 'binary_operator', 'children': ['65', '66'], 'value': '-'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'background'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'color'}, {'id': '67', 'type': 'colon', 'children': []}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '69', 'type': 'ERROR', 'children': ['70', '71']}; {'id': '70', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '72', 'type': 'comparison_operator', 'children': ['73', '74'], 'value': 'in'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'scriptsRun'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '81', 'type': 'argument_list', 'children': []}; {'id': '82', 'type': 'ERROR', 'children': ['83', '84', '85']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '84', 'type': 'None', 'children': []}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'rowstyle'}; {'id': '86', 'type': 'subscript', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'tablestyle'}; {'id': '88', 'type': 'binary_operator', 'children': ['89', '90'], 'value': '%'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '91', 'type': 'boolean_operator', 'children': ['92', '95'], 'value': 'and'}; {'id': '92', 'type': 'subscript', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '94', 'type': 'string', 'children': [], 'value': '"lastSuccess"'}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'expectedScripts'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '101', 'type': 'ERROR', 'children': ['102', '115']}; {'id': '102', 'type': 'ERROR', 'children': ['103', '114']}, {'id': '103', 'type': 'not_operator', 'children': ['104']}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'expectedScripts'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'check'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110', '113']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '110', 'type': 'subscript', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '112', 'type': 'string', 'children': [], 'value': '"lastSuccess"'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'extraLapse'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '115', 'type': 'string', 'children': [], 'value': '"STOPPED"'}; {'id': '116', 'type': 'ERROR', 'children': ['117', '118', '123', '124', '125']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'rowstyle'}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'failstyle'}; {'id': '120', 'type': 'binary_operator', 'children': ['121', '122'], 'value': '%'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '122', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '124', 'type': 'string', 'children': [], 'value': '"FAIL"'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'laststatusstyle'}; {'id': '126', 'type': 'subscript', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'tablestyle'}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '130'], 'value': '%'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '130', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '131', 'type': 'ERROR', 'children': ['132', '137', '138', '143', '144', '145', '154', '155', '160', '161', '162', '169', '170']}; {'id': '132', 'type': 'binary_operator', 'children': ['133', '136'], 'value': '&'}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '135', 'type': 'string', 'children': [], 'value': '"status"'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'RETROSPECT_FAIL'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'laststatusstyle'}; {'id': '138', 'type': 'subscript', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'failstyle'}; {'id': '140', 'type': 'binary_operator', 'children': ['141', '142'], 'value': '%'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '142', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '144', 'type': 'string', 'children': [], 'value': '"FAIL"'}, {'id': '145', 'type': 'boolean_operator', 'children': ['146', '149'], 'value': 'and'}; {'id': '146', 'type': 'comparison_operator', 'children': ['147', '148'], 'value': '!='}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '148', 'type': 'string', 'children': [], 'value': '"STOPPED"'}, {'id': '149', 'type': 'binary_operator', 'children': ['150', '153'], 'value': '&'}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'details'}; {'id': '152', 'type': 'string', 'children': [], 'value': '"status"'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'RETROSPECT_WARNING'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'laststatusstyle'}, {'id': '155', 'type': 'subscript', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'warningstyle'}, {'id': '157', 'type': 'binary_operator', 'children': ['158', '159'], 'value': '%'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '159', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '161', 'type': 'string', 'children': [], 'value': '"WARNINGS"'}; {'id': '162', 'type': 'boolean_operator', 'children': ['163', '166'], 'value': 'and'}, {'id': '163', 'type': 'comparison_operator', 'children': ['164', '165'], 'value': '!='}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '165', 'type': 'string', 'children': [], 'value': '"FAIL"'}; {'id': '166', 'type': 'comparison_operator', 'children': ['167', '168'], 'value': '!='}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '168', 'type': 'string', 'children': [], 'value': '"STOPPED"'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '170', 'type': 'string', 'children': [], 'value': '"OK"'}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'binary_operator', 'children': ['177', '178'], 'value': '%'}, {'id': '177', 'type': 'string', 'children': [], 'value': '\'<tr style="text-align:left;%s">\\n\''}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'rowstyle'}, {'id': '179', 'type': 'ERROR', 'children': ['180', '183', '197']}; {'id': '180', 'type': 'comparison_operator', 'children': ['181', '182'], 'value': '=='}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '182', 'type': 'string', 'children': [], 'value': '"STOPPED"'}, {'id': '183', 'type': 'call', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'binary_operator', 'children': ['189', '190'], 'value': '%'}, {'id': '189', 'type': 'string', 'children': [], 'value': '\'\\t<td style="%s">%s</td>\\n\''}; {'id': '190', 'type': 'tuple', 'children': ['191', '196']}, {'id': '191', 'type': 'subscript', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'failstyle'}, {'id': '193', 'type': 'binary_operator', 'children': ['194', '195'], 'value': '%'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '195', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '197', 'type': 'call', 'children': ['198', '201']}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '201', 'type': 'argument_list', 'children': ['202']}; {'id': '202', 'type': 'binary_operator', 'children': ['203', '204'], 'value': '%'}, {'id': '203', 'type': 'string', 'children': [], 'value': '\'\\t<td style="%s">%s</td>\''}; {'id': '204', 'type': 'tuple', 'children': ['205', '210']}, {'id': '205', 'type': 'subscript', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'tablestyle'}, {'id': '207', 'type': 'binary_operator', 'children': ['208', '209'], 'value': '%'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '209', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '211', 'type': 'subscript', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '213', 'type': 'string', 'children': [], 'value': '"lastRun"'}; {'id': '214', 'type': 'ERROR', 'children': []}, {'id': '215', 'type': 'ERROR', 'children': ['216']}; {'id': '216', 'type': 'comparison_operator', 'children': ['217', '218'], 'value': '=='}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '218', 'type': 'string', 'children': [], 'value': '"STOPPED"'}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'html'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '222', 'type': 'string', 'children': [], 'value': "'\\t"}, {'id': '223', 'type': 'ERROR', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'td'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'style'}; {'id': '226', 'type': 'string', 'children': [], 'value': '"%s"'}, {'id': '227', 'type': 'ERROR', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'href'}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '233', 'type': 'comparison_operator', 'children': ['234', '235', '238', '239', '242'], 'value': '<'}; {'id': '234', 'type': 'string', 'children': [], 'value': "'\\t"}, {'id': '235', 'type': 'ERROR', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'td'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'style'}; {'id': '238', 'type': 'string', 'children': [], 'value': '"%s"'}, {'id': '239', 'type': 'ERROR', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'href'}; {'id': '242', 'type': 'call', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'html'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'binary_operator', 'children': ['248', '249'], 'value': '%'}; {'id': '248', 'type': 'string', 'children': [], 'value': '\'\\t<td style="%s">%s</td>\\n\''}, {'id': '249', 'type': 'tuple', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'laststatusstyle'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '252', 'type': 'ERROR', 'children': ['253']}, {'id': '253', 'type': 'subscript', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '255', 'type': 'string', 'children': [], 'value': '"lastRun"'}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '259', 'type': 'comparison_operator', 'children': ['260', '261', '264', '265', '268'], 'value': '<'}; {'id': '260', 'type': 'string', 'children': [], 'value': "'\\t"}, {'id': '261', 'type': 'ERROR', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'td'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'style'}; {'id': '264', 'type': 'string', 'children': [], 'value': '"%s"'}, {'id': '265', 'type': 'ERROR', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'href'}; {'id': '268', 'type': 'call', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'html'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '272', 'type': 'argument_list', 'children': ['273']}, {'id': '273', 'type': 'binary_operator', 'children': ['274', '275'], 'value': '%'}; {'id': '274', 'type': 'string', 'children': [], 'value': '\'\\t<td style="%s">none found</td>\\n\''}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'laststatusstyle'}; {'id': '276', 'type': 'ERROR', 'children': ['277']}, {'id': '277', 'type': 'subscript', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'details'}, {'id': '279', 'type': 'string', 'children': [], 'value': '"lastSuccess"'}; {'id': '280', 'type': 'attribute', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '283', 'type': 'comparison_operator', 'children': ['284', '285', '286', '312'], 'value': '<'}; {'id': '284', 'type': 'string', 'children': [], 'value': "'\\t"}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'td'}; {'id': '286', 'type': 'ERROR', 'children': ['287', '288', '289', '302', '303', '311']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'href'}, {'id': '289', 'type': 'call', 'children': ['290', '300']}; {'id': '290', 'type': 'attribute', 'children': ['291', '297', '299']}, {'id': '291', 'type': 'call', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '295', 'type': 'argument_list', 'children': ['296']}; {'id': '296', 'type': 'string', 'children': [], 'value': "'\\t<td>none found</td>\\n'"}, {'id': '297', 'type': 'ERROR', 'children': ['298']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'html'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '300', 'type': 'argument_list', 'children': ['301']}, {'id': '301', 'type': 'string', 'children': [], 'value': "'</tr>\\n'"}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '303', 'type': 'call', 'children': ['304', '309']}; {'id': '304', 'type': 'attribute', 'children': ['305', '306', '308']}, {'id': '305', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '306', 'type': 'ERROR', 'children': ['307']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'html'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '309', 'type': 'argument_list', 'children': ['310']}; {'id': '310', 'type': 'string', 'children': [], 'value': '"</table>"'}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'return'} | def generateSummaryHTMLTable(self, extraLapse = TYPICAL_LAPSE):
'''Generates a summary in HTML of the status of the expected scripts broken based on the log.
This summary is returned as a list of strings.
'''
scriptsRun = self.scriptsRun
html = []
html.append("<table style='text-align:center;border:1px solid black;margin-left: auto;margin-right: auto;'>\n")
html.append(' <tr><td colspan="4" style="text-align:center"></td></tr>\n')
html.append(' <tr style="font-weight:bold;background-color:
tablestyle = ['background-color:
warningstyle = ['background-color:
failstyle = ['background-color:
count = 0
for name, details in sorted(scriptsRun.iteritems()):
status = None
rowstyle = tablestyle[count % 2]
if details["lastSuccess"] and expectedScripts.get(name):
if not expectedScripts.check(name, details["lastSuccess"], extraLapse):
status = "STOPPED"
else:
rowstyle = failstyle[count % 2]
status = "FAIL"
laststatusstyle = tablestyle[count % 2]
if details["status"] & RETROSPECT_FAIL:
laststatusstyle = failstyle[count % 2]
status = "FAIL"
elif status != "STOPPED" and details["status"] & RETROSPECT_WARNING:
laststatusstyle = warningstyle[count % 2]
status = "WARNINGS"
elif status != "FAIL" and status != "STOPPED":
status = "OK"
html.append('<tr style="text-align:left;%s">\n' % rowstyle)
if status == "STOPPED":
html.append('\t<td style="%s">%s</td>\n' % (failstyle[count % 2], name))
else:
html.append('\t<td style="%s">%s</td>' % (tablestyle[count % 2], name))
if details["lastRun"]:
if status == "STOPPED":
html.append('\t<td style="%s"><a href="
else:
html.append('\t<td style="%s"><a href="
else:
html.append('\t<td style="%s">%s</td>\n' % (laststatusstyle, status))
if details["lastRun"]:
html.append('\t<td style="%s"><a href="
else:
html.append('\t<td style="%s">none found</td>\n' % laststatusstyle)
if details["lastSuccess"]:
html.append('\t<td><a href="
else:
html.append('\t<td>none found</td>\n')
html.append('</tr>\n')
count += 1
html.append("</table>")
return html |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'apply_quality_control_checks'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'check_gen9_seqs'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'check_short_length'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'check_local_gc_content'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'check_global_gc_content'}; {'id': '16', 'type': 'True', 'children': []}, {'id': '17', 'type': 'block', 'children': ['18', '26', '30', '55', '77', '147', '191', '264', '304']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'upper'}, {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '29', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '30', 'type': 'if_statement', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'check_short_length'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'if_statement', 'children': ['34', '40']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '39'], 'value': '<'}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'min_gene_length'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '%'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'minimum_length: Sequence is %d bp long and needs to be at least %d bp'"}, {'id': '49', 'type': 'tuple', 'children': ['50', '54']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'min_gene_length'}, {'id': '55', 'type': 'if_statement', 'children': ['56', '62']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '61'], 'value': '>'}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'max_gene_length'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'binary_operator', 'children': ['70', '71'], 'value': '%'}; {'id': '70', 'type': 'string', 'children': [], 'value': "'maximum_length: Sequence is %d bp long and needs to be shorter than %d bp'"}, {'id': '71', 'type': 'tuple', 'children': ['72', '76']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'max_gene_length'}, {'id': '77', 'type': 'if_statement', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'check_gen9_seqs'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'for_statement', 'children': ['81', '82', '83']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'site'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'reserved_restriction_sites'}, {'id': '83', 'type': 'block', 'children': ['84', '93', '102', '111', '129']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'dna_to_re'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'site'}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'reverse_site'}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'dna'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'reverse_complement'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'site'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'reverse_pattern'}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'dna_to_re'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'reverse_site'}, {'id': '111', 'type': 'if_statement', 'children': ['112', '118']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'pattern'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'binary_operator', 'children': ['126', '127'], 'value': '%'}; {'id': '126', 'type': 'string', 'children': [], 'value': "'gen9_restricted_sequences: Reserved sequence %s is present'"}, {'id': '127', 'type': 'parenthesized_expression', 'children': ['128']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'site'}, {'id': '129', 'type': 'if_statement', 'children': ['130', '136']}; {'id': '130', 'type': 'call', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'reverse_pattern'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '136', 'type': 'block', 'children': ['137']}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '142', 'type': 'argument_list', 'children': ['143']}, {'id': '143', 'type': 'binary_operator', 'children': ['144', '145'], 'value': '%'}; {'id': '144', 'type': 'string', 'children': [], 'value': "'gen9_restricted_sequences: Reverse-complement of reserved sequence %s is present'"}, {'id': '145', 'type': 'parenthesized_expression', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'site'}, {'id': '147', 'type': 'if_statement', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'check_global_gc_content'}, {'id': '149', 'type': 'block', 'children': ['150', '159', '175']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'gc_content'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'gc_content'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '159', 'type': 'if_statement', 'children': ['160', '163']}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '162'], 'value': '<'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'gc_content'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'global_gc_content_min'}, {'id': '163', 'type': 'block', 'children': ['164']}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'call', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '169', 'type': 'argument_list', 'children': ['170']}; {'id': '170', 'type': 'binary_operator', 'children': ['171', '172'], 'value': '%'}, {'id': '171', 'type': 'string', 'children': [], 'value': "'global_gc_content_min: Global GC content is %.3f%% and must be at least %.3f%%'"}; {'id': '172', 'type': 'tuple', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'gc_content'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'global_gc_content_min'}, {'id': '175', 'type': 'if_statement', 'children': ['176', '179']}; {'id': '176', 'type': 'comparison_operator', 'children': ['177', '178'], 'value': '>'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'gc_content'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'global_gc_content_max'}, {'id': '179', 'type': 'block', 'children': ['180']}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'call', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'binary_operator', 'children': ['187', '188'], 'value': '%'}, {'id': '187', 'type': 'string', 'children': [], 'value': "'global_gc_content_max: Global GC content is %.3f%% and must be less than %.3f%%'"}; {'id': '188', 'type': 'tuple', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'gc_content'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'global_gc_content_max'}, {'id': '191', 'type': 'if_statement', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'check_local_gc_content'}, {'id': '193', 'type': 'block', 'children': ['194', '199', '217']}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'assignment', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'windows'}, {'id': '197', 'type': 'list', 'children': ['198'], 'value': '[seq]'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '199', 'type': 'if_statement', 'children': ['200', '206']}; {'id': '200', 'type': 'comparison_operator', 'children': ['201', '202'], 'value': '<'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'local_gc_window_size'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '206', 'type': 'block', 'children': ['207']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'windows'}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'dna'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'sliding_window'}; {'id': '214', 'type': 'argument_list', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'local_gc_window_size'}, {'id': '217', 'type': 'for_statement', 'children': ['218', '219', '220']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'seq_window'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'windows'}; {'id': '220', 'type': 'block', 'children': ['221', '230', '247']}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'assignment', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'lgc_content'}; {'id': '224', 'type': 'call', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'dna'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'gc_content'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'seq_window'}; {'id': '230', 'type': 'if_statement', 'children': ['231', '234']}, {'id': '231', 'type': 'comparison_operator', 'children': ['232', '233'], 'value': '<'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'lgc_content'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'local_gc_content_min'}; {'id': '234', 'type': 'block', 'children': ['235', '246']}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '240', 'type': 'argument_list', 'children': ['241']}, {'id': '241', 'type': 'binary_operator', 'children': ['242', '243'], 'value': '%'}; {'id': '242', 'type': 'string', 'children': [], 'value': "'local_gc_content_min: Local GC content is %.3f%% and must be at least %.3f%%'"}, {'id': '243', 'type': 'tuple', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'lgc_content'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'local_gc_content_min'}; {'id': '246', 'type': 'break_statement', 'children': []}, {'id': '247', 'type': 'if_statement', 'children': ['248', '251']}; {'id': '248', 'type': 'comparison_operator', 'children': ['249', '250'], 'value': '>'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'lgc_content'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'local_gc_content_max'}, {'id': '251', 'type': 'block', 'children': ['252', '263']}; {'id': '252', 'type': 'expression_statement', 'children': ['253']}, {'id': '253', 'type': 'call', 'children': ['254', '257']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '257', 'type': 'argument_list', 'children': ['258']}; {'id': '258', 'type': 'binary_operator', 'children': ['259', '260'], 'value': '%'}, {'id': '259', 'type': 'string', 'children': [], 'value': "'local_gc_content_max: Local GC content is %.3f%% and must be less than %.3f%%'"}; {'id': '260', 'type': 'tuple', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'lgc_content'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'local_gc_content_max'}, {'id': '263', 'type': 'break_statement', 'children': []}; {'id': '264', 'type': 'for_statement', 'children': ['265', '266', '269']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '266', 'type': 'attribute', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'dna_bases'}, {'id': '269', 'type': 'block', 'children': ['270', '278']}; {'id': '270', 'type': 'expression_statement', 'children': ['271']}, {'id': '271', 'type': 'assignment', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'homopolymer'}, {'id': '273', 'type': 'binary_operator', 'children': ['274', '275'], 'value': '*'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '275', 'type': 'subscript', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'homopolymer_max_lengths'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '278', 'type': 'if_statement', 'children': ['279', '282']}, {'id': '279', 'type': 'comparison_operator', 'children': ['280', '281'], 'value': 'in'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'homopolymer'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '282', 'type': 'block', 'children': ['283']}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'call', 'children': ['285', '288']}, {'id': '285', 'type': 'attribute', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '288', 'type': 'argument_list', 'children': ['289']}, {'id': '289', 'type': 'binary_operator', 'children': ['290', '291'], 'value': '%'}; {'id': '290', 'type': 'string', 'children': [], 'value': "'max_%s_homopolymer: %s'"}, {'id': '291', 'type': 'tuple', 'children': ['292', '297']}; {'id': '292', 'type': 'call', 'children': ['293', '296']}, {'id': '293', 'type': 'attribute', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '296', 'type': 'argument_list', 'children': []}, {'id': '297', 'type': 'call', 'children': ['298', '301']}; {'id': '298', 'type': 'attribute', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'dna'}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'case_highlight'}, {'id': '301', 'type': 'argument_list', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'a_homopolymer'}; {'id': '304', 'type': 'if_statement', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'}; {'id': '306', 'type': 'block', 'children': ['307', '311']}, {'id': '307', 'type': 'expression_statement', 'children': ['308']}; {'id': '308', 'type': 'assignment', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'intro'}; {'id': '310', 'type': 'string', 'children': [], 'value': '"The given sequence fails following Gen9 design guidelines:"'}, {'id': '311', 'type': 'raise_statement', 'children': ['312']}; {'id': '312', 'type': 'call', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '314', 'type': 'argument_list', 'children': ['315']}, {'id': '315', 'type': 'call', 'children': ['316', '319']}; {'id': '316', 'type': 'attribute', 'children': ['317', '318']}, {'id': '317', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '319', 'type': 'argument_list', 'children': ['320']}; {'id': '320', 'type': 'binary_operator', 'children': ['321', '323'], 'value': '+'}, {'id': '321', 'type': 'list', 'children': ['322'], 'value': '[intro]'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'intro'}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'failure_reasons'} | def apply_quality_control_checks(
seq,
check_gen9_seqs=True,
check_short_length=True,
check_local_gc_content=True,
check_global_gc_content=True):
seq = seq.upper()
failure_reasons = []
if check_short_length:
if len(seq) < min_gene_length:
failure_reasons.append('minimum_length: Sequence is %d bp long and needs to be at least %d bp'%(len(seq),min_gene_length))
if len(seq) > max_gene_length:
failure_reasons.append('maximum_length: Sequence is %d bp long and needs to be shorter than %d bp'%(len(seq),max_gene_length))
if check_gen9_seqs:
for site in reserved_restriction_sites:
pattern = dna.dna_to_re(site)
reverse_site = dna.reverse_complement(site)
reverse_pattern = dna.dna_to_re(reverse_site)
if pattern.match(seq):
failure_reasons.append('gen9_restricted_sequences: Reserved sequence %s is present'%(site))
if reverse_pattern.match(seq):
failure_reasons.append('gen9_restricted_sequences: Reverse-complement of reserved sequence %s is present'%(site))
if check_global_gc_content:
gc_content = dna.gc_content(seq)
if gc_content < global_gc_content_min:
failure_reasons.append('global_gc_content_min: Global GC content is %.3f%% and must be at least %.3f%%'%(gc_content,global_gc_content_min))
if gc_content > global_gc_content_max:
failure_reasons.append('global_gc_content_max: Global GC content is %.3f%% and must be less than %.3f%%'%(gc_content,global_gc_content_max))
if check_local_gc_content:
windows = [seq]
if local_gc_window_size < len(seq):
windows = dna.sliding_window(seq, local_gc_window_size)
for seq_window in windows:
lgc_content = dna.gc_content(seq_window)
if lgc_content < local_gc_content_min:
failure_reasons.append('local_gc_content_min: Local GC content is %.3f%% and must be at least %.3f%%'%(lgc_content,local_gc_content_min))
break
if lgc_content > local_gc_content_max:
failure_reasons.append('local_gc_content_max: Local GC content is %.3f%% and must be less than %.3f%%'%(lgc_content,local_gc_content_max))
break
for base in dna.dna_bases:
homopolymer = base * homopolymer_max_lengths[base]
if homopolymer in seq:
failure_reasons.append('max_%s_homopolymer: %s'%(
base.lower(), dna.case_highlight(seq,a_homopolymer)))
if failure_reasons:
intro = "The given sequence fails following Gen9 design guidelines:"
raise ValueError('\n'.join([intro] + failure_reasons)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'oauth_connect'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '7', 'type': 'block', 'children': ['8', '15', '32', '69', '77', '83', '92', '101', '105', '109', '113', '152', '259', '387', '398']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'valid_actions'}, {'id': '11', 'type': 'list', 'children': ['12', '13', '14'], 'value': '["connect", "authorized", "test"]'}; {'id': '12', 'type': 'string', 'children': [], 'value': '"connect"'}, {'id': '13', 'type': 'string', 'children': [], 'value': '"authorized"'}; {'id': '14', 'type': 'string', 'children': [], 'value': '"test"'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '_redirect'}; {'id': '18', 'type': 'conditional_expression', 'children': ['19', '26', '29'], 'value': 'if'}, {'id': '19', 'type': 'attribute', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'views'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'Account'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'account_settings'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'}; {'id': '28', 'type': 'argument_list', 'children': []}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'login'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '63']}, {'id': '33', 'type': 'boolean_operator', 'children': ['34', '56', '57'], 'value': 'or'}; {'id': '34', 'type': 'boolean_operator', 'children': ['35', '48', '49'], 'value': 'or'}, {'id': '35', 'type': 'boolean_operator', 'children': ['36', '39', '40'], 'value': 'or'}; {'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'not'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'valid_actions'}, {'id': '39', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '42'], 'value': 'not'}, {'id': '41', 'type': 'string', 'children': [], 'value': '"oauth"'}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '__options__'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'string', 'children': [], 'value': '"registration_methods"'}; {'id': '48', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '49', 'type': 'not_operator', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '__options__'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'string', 'children': [], 'value': '"allow_registration"'}; {'id': '56', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '57', 'type': 'not_operator', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'oauth'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'return_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'redirect'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': '_redirect'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '74', 'type': 'argument_list', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'oauth'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': '__params__'}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'me_args'}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'string', 'children': [], 'value': '"me"'}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'string', 'children': [], 'value': '"user_id"'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'oauth_user_id'}; {'id': '104', 'type': 'None', 'children': []}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'oauth_name'}; {'id': '108', 'type': 'None', 'children': []}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'oauth_email'}; {'id': '112', 'type': 'None', 'children': []}, {'id': '113', 'type': 'if_statement', 'children': ['114', '117']}; {'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': '=='}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '116', 'type': 'string', 'children': [], 'value': '"test"'}, {'id': '117', 'type': 'block', 'children': ['118', '134', '139']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'session_data'}, {'id': '121', 'type': 'dictionary', 'children': ['122', '125', '128', '131']}; {'id': '122', 'type': 'pair', 'children': ['123', '124']}, {'id': '123', 'type': 'string', 'children': [], 'value': '"provider"'}; {'id': '124', 'type': 'string', 'children': [], 'value': '"ensure"'}, {'id': '125', 'type': 'pair', 'children': ['126', '127']}; {'id': '126', 'type': 'string', 'children': [], 'value': '"user_id"'}, {'id': '127', 'type': 'string', 'children': [], 'value': '"1234"'}; {'id': '128', 'type': 'pair', 'children': ['129', '130']}, {'id': '129', 'type': 'string', 'children': [], 'value': '"name"'}; {'id': '130', 'type': 'string', 'children': [], 'value': '"Mardix"'}, {'id': '131', 'type': 'pair', 'children': ['132', '133']}; {'id': '132', 'type': 'string', 'children': [], 'value': '"email"'}, {'id': '133', 'type': 'string', 'children': [], 'value': '"[email protected]"'}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'set_oauth_session'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'session_data'}, {'id': '139', 'type': 'return_statement', 'children': ['140']}; {'id': '140', 'type': 'call', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'redirect'}; {'id': '142', 'type': 'argument_list', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'url_for'}, {'id': '145', 'type': 'argument_list', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'register'}, {'id': '149', 'type': 'keyword_argument', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'oauth'}, {'id': '151', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '152', 'type': 'if_statement', 'children': ['153', '156', '202']}, {'id': '153', 'type': 'comparison_operator', 'children': ['154', '155'], 'value': '=='}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '155', 'type': 'string', 'children': [], 'value': '"connect"'}; {'id': '156', 'type': 'block', 'children': ['157', '168', '193']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': '_next'}; {'id': '160', 'type': 'call', 'children': ['161', '166']}, {'id': '161', 'type': 'attribute', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'string', 'children': [], 'value': "'next'"}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'authorized_url'}, {'id': '171', 'type': 'call', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'url_for'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175', '178', '181', '190']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '175', 'type': 'keyword_argument', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '178', 'type': 'keyword_argument', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '180', 'type': 'string', 'children': [], 'value': '"authorized"'}, {'id': '181', 'type': 'keyword_argument', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'next'}, {'id': '183', 'type': 'boolean_operator', 'children': ['184', '189'], 'value': 'or'}; {'id': '184', 'type': 'boolean_operator', 'children': ['185', '186'], 'value': 'or'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': '_next'}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'referrer'}, {'id': '189', 'type': 'None', 'children': []}; {'id': '190', 'type': 'keyword_argument', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': '_external'}; {'id': '192', 'type': 'True', 'children': []}, {'id': '193', 'type': 'return_statement', 'children': ['194']}; {'id': '194', 'type': 'call', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'client'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'authorize'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'keyword_argument', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'callback'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'authorized_url'}; {'id': '202', 'type': 'elif_clause', 'children': ['203', '206']}, {'id': '203', 'type': 'comparison_operator', 'children': ['204', '205'], 'value': '=='}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '205', 'type': 'string', 'children': [], 'value': '"authorized"'}; {'id': '206', 'type': 'block', 'children': ['207', '215']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'client'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'authorized_response'}; {'id': '214', 'type': 'argument_list', 'children': []}, {'id': '215', 'type': 'if_statement', 'children': ['216', '219', '221', '233']}; {'id': '216', 'type': 'comparison_operator', 'children': ['217', '218'], 'value': 'is'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '218', 'type': 'None', 'children': []}, {'id': '219', 'type': 'block', 'children': ['220']}; {'id': '220', 'type': 'pass_statement', 'children': []}, {'id': '221', 'type': 'elif_clause', 'children': ['222', '227']}; {'id': '222', 'type': 'call', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '224', 'type': 'argument_list', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'resp'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'OAuthException'}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'call', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'flash_error'}, {'id': '231', 'type': 'argument_list', 'children': ['232']}; {'id': '232', 'type': 'string', 'children': [], 'value': '"Access Denied"'}, {'id': '233', 'type': 'else_clause', 'children': ['234']}; {'id': '234', 'type': 'block', 'children': ['235']}, {'id': '235', 'type': 'if_statement', 'children': ['236', '238', '248']}; {'id': '236', 'type': 'not_operator', 'children': ['237']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'me_args'}; {'id': '238', 'type': 'block', 'children': ['239']}, {'id': '239', 'type': 'expression_statement', 'children': ['240']}; {'id': '240', 'type': 'assignment', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'oauth_user_id'}; {'id': '242', 'type': 'call', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'resp'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '248', 'type': 'else_clause', 'children': ['249']}, {'id': '249', 'type': 'block', 'children': ['250']}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'assignment', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'me'}, {'id': '253', 'type': 'call', 'children': ['254', '257']}; {'id': '254', 'type': 'attribute', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '257', 'type': 'argument_list', 'children': ['258']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'me_args'}, {'id': '259', 'type': 'if_statement', 'children': ['260', '265', '380']}; {'id': '260', 'type': 'boolean_operator', 'children': ['261', '264'], 'value': 'and'}, {'id': '261', 'type': 'comparison_operator', 'children': ['262', '263'], 'value': '=='}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '263', 'type': 'string', 'children': [], 'value': '"authorized"'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'oauth_user_id'}, {'id': '265', 'type': 'block', 'children': ['266']}; {'id': '266', 'type': 'if_statement', 'children': ['267', '270', '320']}, {'id': '267', 'type': 'call', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'is_authenticated'}, {'id': '269', 'type': 'argument_list', 'children': []}; {'id': '270', 'type': 'block', 'children': ['271', '309']}, {'id': '271', 'type': 'try_statement', 'children': ['272', '296']}; {'id': '272', 'type': 'block', 'children': ['273', '285']}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'call', 'children': ['275', '278']}, {'id': '275', 'type': 'attribute', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'current_user'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'add_federated_login'}; {'id': '278', 'type': 'argument_list', 'children': ['279', '282']}, {'id': '279', 'type': 'keyword_argument', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '282', 'type': 'keyword_argument', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'federated_id'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'oauth_user_id'}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'call', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'flash_success'}; {'id': '288', 'type': 'argument_list', 'children': ['289']}, {'id': '289', 'type': 'binary_operator', 'children': ['290', '291'], 'value': '%'}; {'id': '290', 'type': 'string', 'children': [], 'value': '"You can now login with your %s account"'}, {'id': '291', 'type': 'call', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'upper'}, {'id': '295', 'type': 'argument_list', 'children': []}; {'id': '296', 'type': 'except_clause', 'children': ['297', '301']}, {'id': '297', 'type': 'as_pattern', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '299', 'type': 'as_pattern_target', 'children': ['300']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '301', 'type': 'block', 'children': ['302']}; {'id': '302', 'type': 'expression_statement', 'children': ['303']}, {'id': '303', 'type': 'call', 'children': ['304', '307']}; {'id': '304', 'type': 'attribute', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'exception'}, {'id': '307', 'type': 'argument_list', 'children': ['308']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '309', 'type': 'return_statement', 'children': ['310']}; {'id': '310', 'type': 'call', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'redirect'}; {'id': '312', 'type': 'argument_list', 'children': ['313']}, {'id': '313', 'type': 'attribute', 'children': ['314', '319']}; {'id': '314', 'type': 'attribute', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'views'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'Account'}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'account_settings'}; {'id': '320', 'type': 'else_clause', 'children': ['321']}, {'id': '321', 'type': 'block', 'children': ['322', '330']}; {'id': '322', 'type': 'expression_statement', 'children': ['323']}, {'id': '323', 'type': 'assignment', 'children': ['324', '325']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '325', 'type': 'call', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'with_federation'}, {'id': '327', 'type': 'argument_list', 'children': ['328', '329']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'oauth_user_id'}; {'id': '330', 'type': 'if_statement', 'children': ['331', '332', '357']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '332', 'type': 'block', 'children': ['333', '338']}, {'id': '333', 'type': 'expression_statement', 'children': ['334']}; {'id': '334', 'type': 'call', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'create_session'}; {'id': '336', 'type': 'argument_list', 'children': ['337']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '338', 'type': 'return_statement', 'children': ['339']}, {'id': '339', 'type': 'call', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'redirect'}, {'id': '341', 'type': 'argument_list', 'children': ['342']}; {'id': '342', 'type': 'boolean_operator', 'children': ['343', '351'], 'value': 'or'}, {'id': '343', 'type': 'call', 'children': ['344', '349']}; {'id': '344', 'type': 'attribute', 'children': ['345', '348']}, {'id': '345', 'type': 'attribute', 'children': ['346', '347']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '349', 'type': 'argument_list', 'children': ['350']}; {'id': '350', 'type': 'string', 'children': [], 'value': '"next"'}, {'id': '351', 'type': 'call', 'children': ['352', '355']}; {'id': '352', 'type': 'attribute', 'children': ['353', '354']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': '__options__'}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '355', 'type': 'argument_list', 'children': ['356']}; {'id': '356', 'type': 'string', 'children': [], 'value': '"login_view"'}, {'id': '357', 'type': 'else_clause', 'children': ['358']}; {'id': '358', 'type': 'block', 'children': ['359', '375']}, {'id': '359', 'type': 'expression_statement', 'children': ['360']}; {'id': '360', 'type': 'assignment', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'session_data'}; {'id': '362', 'type': 'dictionary', 'children': ['363', '366', '369', '372']}, {'id': '363', 'type': 'pair', 'children': ['364', '365']}; {'id': '364', 'type': 'string', 'children': [], 'value': '"provider"'}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'provider'}; {'id': '366', 'type': 'pair', 'children': ['367', '368']}, {'id': '367', 'type': 'string', 'children': [], 'value': '"user_id"'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'oauth_user_id'}, {'id': '369', 'type': 'pair', 'children': ['370', '371']}; {'id': '370', 'type': 'string', 'children': [], 'value': '"name"'}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'oauth_name'}; {'id': '372', 'type': 'pair', 'children': ['373', '374']}, {'id': '373', 'type': 'string', 'children': [], 'value': '"email"'}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'oauth_email'}, {'id': '375', 'type': 'expression_statement', 'children': ['376']}; {'id': '376', 'type': 'call', 'children': ['377', '378']}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'set_oauth_session'}; {'id': '378', 'type': 'argument_list', 'children': ['379']}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'session_data'}; {'id': '380', 'type': 'else_clause', 'children': ['381']}, {'id': '381', 'type': 'block', 'children': ['382']}; {'id': '382', 'type': 'return_statement', 'children': ['383']}, {'id': '383', 'type': 'call', 'children': ['384', '385']}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'redirect'}, {'id': '385', 'type': 'argument_list', 'children': ['386']}; {'id': '386', 'type': 'identifier', 'children': [], 'value': '_redirect'}, {'id': '387', 'type': 'return_statement', 'children': ['388']}; {'id': '388', 'type': 'dictionary', 'children': ['389', '392', '395']}, {'id': '389', 'type': 'pair', 'children': ['390', '391']}; {'id': '390', 'type': 'string', 'children': [], 'value': '"action"'}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '392', 'type': 'pair', 'children': ['393', '394']}, {'id': '393', 'type': 'string', 'children': [], 'value': '"provider"'}; {'id': '394', 'type': 'identifier', 'children': [], 'value': 'provider'}, {'id': '395', 'type': 'pair', 'children': ['396', '397']}; {'id': '396', 'type': 'string', 'children': [], 'value': '"authorized_url"'}, {'id': '397', 'type': 'string', 'children': [], 'value': '""'}; {'id': '398', 'type': 'return_statement', 'children': ['399']}, {'id': '399', 'type': 'call', 'children': ['400', '401']}; {'id': '400', 'type': 'identifier', 'children': [], 'value': 'redirect'}, {'id': '401', 'type': 'argument_list', 'children': ['402']} | def oauth_connect(self, provider, action):
valid_actions = ["connect", "authorized", "test"]
_redirect = views.auth.Account.account_settings if is_authenticated() else self.login
if action not in valid_actions \
or "oauth" not in __options__.get("registration_methods") \
or not __options__.get("allow_registration") \
or not hasattr(oauth, provider):
return redirect(_redirect)
client = getattr(oauth, provider)
params = client.__params__
me_args = params.get("me")
user_id = params.get("user_id")
oauth_user_id = None
oauth_name = None
oauth_email = None
if action == "test":
session_data = {
"provider": "ensure",
"user_id": "1234",
"name": "Mardix",
"email": "[email protected]",
}
set_oauth_session(session_data)
return redirect(url_for(self.register, oauth=1))
if action == "connect":
_next = request.args.get('next')
authorized_url = url_for(self,
provider=provider,
action="authorized",
next=_next or request.referrer or None,
_external=True)
return client.authorize(callback=authorized_url)
elif action == "authorized":
resp = client.authorized_response()
if resp is None:
pass
elif isinstance(resp, OAuthException):
flash_error("Access Denied")
else:
if not me_args:
oauth_user_id = resp.get(user_id)
else:
me = client.get(me_args)
if action == "authorized" and oauth_user_id:
if is_authenticated():
try:
current_user.add_federated_login(provider=provider,
federated_id=oauth_user_id)
flash_success(
"You can now login with your %s account" % provider.upper())
except Exception as e:
logging.exception(e)
return redirect(views.auth.Account.account_settings)
else:
user = with_federation(provider, oauth_user_id)
if user:
create_session(user)
return redirect(request.args.get("next") or __options__.get(
"login_view"))
else:
session_data = {
"provider": provider,
"user_id": oauth_user_id,
"name": oauth_name,
"email": oauth_email,
}
set_oauth_session(session_data)
else:
return redirect(_redirect)
return {
"action": action,
"provider": provider,
"authorized_url": ""
}
return redirect(_redirect) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'set_neighbors'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '16', '25', '29', '186', '195', '206', '210', '237', '246', '266', '284', '298']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''Set neighbors for multi-environments, their slave environments,\n and agents.\n '''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '23']}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"Settings grid neighbors for the multi-environments."'}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'tasks'}; {'id': '28', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '29', 'type': 'for_statement', 'children': ['30', '31', '40']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'grid'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'for_statement', 'children': ['42', '43', '54']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'subscript', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'grid'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '54', 'type': 'block', 'children': ['55', '65', '77', '94', '118', '135', '161', '179']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'addr'}; {'id': '58', 'type': 'subscript', 'children': ['59', '64']}, {'id': '59', 'type': 'subscript', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'grid'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '72']}, {'id': '67', 'type': 'pattern_list', 'children': ['68', '69', '70', '71']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'E'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'S'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'W'}; {'id': '72', 'type': 'expression_list', 'children': ['73', '74', '75', '76']}, {'id': '73', 'type': 'None', 'children': []}; {'id': '74', 'type': 'None', 'children': []}, {'id': '75', 'type': 'None', 'children': []}; {'id': '76', 'type': 'None', 'children': []}, {'id': '77', 'type': 'if_statement', 'children': ['78', '81']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': '!='}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '80', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'W'}, {'id': '85', 'type': 'subscript', 'children': ['86', '93']}; {'id': '86', 'type': 'subscript', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'grid'}; {'id': '90', 'type': 'binary_operator', 'children': ['91', '92'], 'value': '-'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '94', 'type': 'if_statement', 'children': ['95', '105']}, {'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': '!='}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '97', 'type': 'binary_operator', 'children': ['98', '104'], 'value': '-'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'grid'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'E'}, {'id': '109', 'type': 'subscript', 'children': ['110', '117']}; {'id': '110', 'type': 'subscript', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'grid'}; {'id': '114', 'type': 'binary_operator', 'children': ['115', '116'], 'value': '+'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '116', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '118', 'type': 'if_statement', 'children': ['119', '122']}, {'id': '119', 'type': 'comparison_operator', 'children': ['120', '121'], 'value': '!='}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '121', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '122', 'type': 'block', 'children': ['123']}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'assignment', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '126', 'type': 'subscript', 'children': ['127', '132']}, {'id': '127', 'type': 'subscript', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'grid'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '132', 'type': 'binary_operator', 'children': ['133', '134'], 'value': '-'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '134', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '135', 'type': 'if_statement', 'children': ['136', '148']}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': '!='}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '138', 'type': 'binary_operator', 'children': ['139', '147'], 'value': '-'}, {'id': '139', 'type': 'call', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'subscript', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'grid'}; {'id': '146', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '147', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'S'}; {'id': '152', 'type': 'subscript', 'children': ['153', '158']}, {'id': '153', 'type': 'subscript', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'grid'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '158', 'type': 'binary_operator', 'children': ['159', '160'], 'value': '+'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '160', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'task'}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'asyncio'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'ensure_future'}; {'id': '168', 'type': 'argument_list', 'children': ['169']}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': '_set_node_neighbors'}, {'id': '173', 'type': 'argument_list', 'children': ['174', '175', '176', '177', '178']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'addr'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'E'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'S'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'W'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'tasks'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'task'}; {'id': '186', 'type': 'expression_statement', 'children': ['187']}, {'id': '187', 'type': 'await', 'children': ['188']}; {'id': '188', 'type': 'call', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'asyncio'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'gather'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'list_splat', 'children': ['194']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'tasks'}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '202']}, {'id': '197', 'type': 'attribute', 'children': ['198', '201']}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'concatenated_string', 'children': ['204', '205']}; {'id': '204', 'type': 'string', 'children': [], 'value': '"Setting grid neighbors for the slave environments "'}, {'id': '205', 'type': 'string', 'children': [], 'value': '"and their agents."'}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'assignment', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'tasks'}, {'id': '209', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '210', 'type': 'for_statement', 'children': ['211', '212', '215']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'addr'}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'addrs'}, {'id': '215', 'type': 'block', 'children': ['216', '230']}; {'id': '216', 'type': 'expression_statement', 'children': ['217']}, {'id': '217', 'type': 'assignment', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'task'}, {'id': '219', 'type': 'call', 'children': ['220', '223']}; {'id': '220', 'type': 'attribute', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'asyncio'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'ensure_future'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'call', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': '_set_neighbors'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'addr'}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'call', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'tasks'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'task'}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'await', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'asyncio'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'gather'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'list_splat', 'children': ['245']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'tasks'}; {'id': '246', 'type': 'expression_statement', 'children': ['247']}, {'id': '247', 'type': 'call', 'children': ['248', '253']}; {'id': '248', 'type': 'attribute', 'children': ['249', '252']}, {'id': '249', 'type': 'attribute', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'call', 'children': ['255', '258']}, {'id': '255', 'type': 'attribute', 'children': ['256', '257']}; {'id': '256', 'type': 'string', 'children': [], 'value': '"All grid neighbors set in {} seconds."'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '258', 'type': 'argument_list', 'children': ['259']}, {'id': '259', 'type': 'binary_operator', 'children': ['260', '265'], 'value': '-'}; {'id': '260', 'type': 'call', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '264', 'type': 'argument_list', 'children': []}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'assignment', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '269', 'type': 'binary_operator', 'children': ['270', '281'], 'value': '*'}; {'id': '270', 'type': 'binary_operator', 'children': ['271', '276'], 'value': '*'}, {'id': '271', 'type': 'subscript', 'children': ['272', '275']}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': '_ngs'}, {'id': '275', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '276', 'type': 'subscript', 'children': ['277', '280']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': '_gs'}; {'id': '280', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '281', 'type': 'attribute', 'children': ['282', '283']}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '283', 'type': 'identifier', 'children': [], 'value': '_n_slaves'}; {'id': '284', 'type': 'expression_statement', 'children': ['285']}, {'id': '285', 'type': 'assignment', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '287', 'type': 'binary_operator', 'children': ['288', '293'], 'value': '*'}; {'id': '288', 'type': 'subscript', 'children': ['289', '292']}, {'id': '289', 'type': 'attribute', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '291', 'type': 'identifier', 'children': [], 'value': '_ngs'}; {'id': '292', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '293', 'type': 'subscript', 'children': ['294', '297']}; {'id': '294', 'type': 'attribute', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': '_gs'}, {'id': '297', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '298', 'type': 'expression_statement', 'children': ['299']}, {'id': '299', 'type': 'call', 'children': ['300', '305']}; {'id': '300', 'type': 'attribute', 'children': ['301', '304']}, {'id': '301', 'type': 'attribute', 'children': ['302', '303']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'call', 'children': ['307', '312']}, {'id': '307', 'type': 'attribute', 'children': ['308', '311']}; {'id': '308', 'type': 'concatenated_string', 'children': ['309', '310']}, {'id': '309', 'type': 'string', 'children': [], 'value': '"Initialized a distributed grid with overall size "'}; {'id': '310', 'type': 'string', 'children': [], 'value': '"({}, {}). Total of {} agents."'}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '312', 'type': 'argument_list', 'children': ['313', '314', '315']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '315', 'type': 'binary_operator', 'children': ['316', '317'], 'value': '*'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'y'} | async def set_neighbors(self):
'''Set neighbors for multi-environments, their slave environments,
and agents.
'''
t = time.time()
self.logger.debug("Settings grid neighbors for the multi-environments.")
tasks = []
for i in range(len(self.grid)):
for j in range(len(self.grid[0])):
addr = self.grid[i][j]
N, E, S, W = None, None, None, None
if i != 0:
W = self.grid[i-1][j]
if i != len(self.grid) - 1:
E = self.grid[i+1][j]
if j != 0:
N = self.grid[i][j-1]
if j != len(self.grid[0]) - 1:
S = self.grid[i][j+1]
task = asyncio.ensure_future(self._set_node_neighbors(addr, N, E, S, W))
tasks.append(task)
await asyncio.gather(*tasks)
self.logger.debug("Setting grid neighbors for the slave environments "
"and their agents.")
tasks = []
for addr in self.addrs:
task = asyncio.ensure_future(self._set_neighbors(addr))
tasks.append(task)
await asyncio.gather(*tasks)
self.logger.debug("All grid neighbors set in {} seconds."
.format(time.time() - t))
x = self._ngs[0] * self._gs[0] * self._n_slaves
y = self._ngs[1] * self._gs[1]
self.logger.info("Initialized a distributed grid with overall size "
"({}, {}). Total of {} agents.".format(x, y, x*y)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'vectors'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '7', 'type': 'string', 'children': [], 'value': '"all"'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '32', '50']}; {'id': '12', 'type': 'if_statement', 'children': ['13', '19']}, {'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'not'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '15', 'type': 'list', 'children': ['16', '17', '18'], 'value': '["all", "incoming", "outgoing"]'}; {'id': '16', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '17', 'type': 'string', 'children': [], 'value': '"incoming"'}; {'id': '18', 'type': 'string', 'children': [], 'value': '"outgoing"'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'raise_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'concatenated_string', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': '"{} is not a valid vector direction. "'}; {'id': '28', 'type': 'string', 'children': [], 'value': '"Must be all, incoming or outgoing."'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '39']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'not'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '35', 'type': 'list', 'children': ['36', '37', '38'], 'value': '["all", False, True]'}; {'id': '36', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '37', 'type': 'False', 'children': []}; {'id': '38', 'type': 'True', 'children': []}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'raise_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'string', 'children': [], 'value': '"{} is not a valid vector failed"'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '54', '139']}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': '=='}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '53', 'type': 'string', 'children': [], 'value': '"all"'}; {'id': '54', 'type': 'block', 'children': ['55', '91', '115']}, {'id': '55', 'type': 'if_statement', 'children': ['56', '59']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': '=='}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '58', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'return_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '90']}; {'id': '62', 'type': 'attribute', 'children': ['63', '88', '89']}, {'id': '63', 'type': 'call', 'children': ['64', '70']}; {'id': '64', 'type': 'attribute', 'children': ['65', '68', '69']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '68', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'or_'}, {'id': '73', 'type': 'argument_list', 'children': ['74', '81']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '78'], 'value': '=='}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'destination_id'}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '85'], 'value': '=='}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'Vector'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'origin_id'}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '88', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '90', 'type': 'argument_list', 'children': []}, {'id': '91', 'type': 'if_statement', 'children': ['92', '95']}; {'id': '92', 'type': 'comparison_operator', 'children': ['93', '94'], 'value': '=='}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '94', 'type': 'string', 'children': [], 'value': '"incoming"'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'return_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '114']}; {'id': '98', 'type': 'attribute', 'children': ['99', '112', '113']}, {'id': '99', 'type': 'call', 'children': ['100', '106']}; {'id': '100', 'type': 'attribute', 'children': ['101', '104', '105']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '104', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'filter_by'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'destination_id'}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '112', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '114', 'type': 'argument_list', 'children': []}, {'id': '115', 'type': 'if_statement', 'children': ['116', '119']}; {'id': '116', 'type': 'comparison_operator', 'children': ['117', '118'], 'value': '=='}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '118', 'type': 'string', 'children': [], 'value': '"outgoing"'}, {'id': '119', 'type': 'block', 'children': ['120']}; {'id': '120', 'type': 'return_statement', 'children': ['121']}, {'id': '121', 'type': 'call', 'children': ['122', '138']}; {'id': '122', 'type': 'attribute', 'children': ['123', '136', '137']}, {'id': '123', 'type': 'call', 'children': ['124', '130']}; {'id': '124', 'type': 'attribute', 'children': ['125', '128', '129']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '128', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'filter_by'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'keyword_argument', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'origin_id'}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '136', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '138', 'type': 'argument_list', 'children': []}, {'id': '139', 'type': 'else_clause', 'children': ['140']}; {'id': '140', 'type': 'block', 'children': ['141', '185', '212']}, {'id': '141', 'type': 'if_statement', 'children': ['142', '145']}; {'id': '142', 'type': 'comparison_operator', 'children': ['143', '144'], 'value': '=='}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '144', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'return_statement', 'children': ['147']}, {'id': '147', 'type': 'call', 'children': ['148', '184']}; {'id': '148', 'type': 'attribute', 'children': ['149', '182', '183']}, {'id': '149', 'type': 'call', 'children': ['150', '156']}; {'id': '150', 'type': 'attribute', 'children': ['151', '154', '155']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '154', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'and_'}, {'id': '159', 'type': 'argument_list', 'children': ['160', '165']}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '164'], 'value': '=='}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '165', 'type': 'call', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'or_'}, {'id': '167', 'type': 'argument_list', 'children': ['168', '175']}; {'id': '168', 'type': 'comparison_operator', 'children': ['169', '172'], 'value': '=='}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'destination_id'}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '175', 'type': 'comparison_operator', 'children': ['176', '179'], 'value': '=='}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'Vector'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'origin_id'}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '182', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'all'}; {'id': '184', 'type': 'argument_list', 'children': []}, {'id': '185', 'type': 'if_statement', 'children': ['186', '189']}; {'id': '186', 'type': 'comparison_operator', 'children': ['187', '188'], 'value': '=='}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '188', 'type': 'string', 'children': [], 'value': '"incoming"'}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'return_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '211']}; {'id': '192', 'type': 'attribute', 'children': ['193', '209', '210']}, {'id': '193', 'type': 'call', 'children': ['194', '200']}; {'id': '194', 'type': 'attribute', 'children': ['195', '198', '199']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'Vector'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '198', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'filter_by'}; {'id': '200', 'type': 'argument_list', 'children': ['201', '206']}, {'id': '201', 'type': 'keyword_argument', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'destination_id'}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '209', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '211', 'type': 'argument_list', 'children': []}; {'id': '212', 'type': 'if_statement', 'children': ['213', '216']}, {'id': '213', 'type': 'comparison_operator', 'children': ['214', '215'], 'value': '=='}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '215', 'type': 'string', 'children': [], 'value': '"outgoing"'}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'return_statement', 'children': ['218']}; {'id': '218', 'type': 'call', 'children': ['219', '238']}, {'id': '219', 'type': 'attribute', 'children': ['220', '236', '237']}; {'id': '220', 'type': 'call', 'children': ['221', '227']}, {'id': '221', 'type': 'attribute', 'children': ['222', '225', '226']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'Vector'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '225', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'filter_by'}, {'id': '227', 'type': 'argument_list', 'children': ['228', '233']}; {'id': '228', 'type': 'keyword_argument', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'origin_id'}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '236', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'all'} | def vectors(self, direction="all", failed=False):
if direction not in ["all", "incoming", "outgoing"]:
raise ValueError(
"{} is not a valid vector direction. "
"Must be all, incoming or outgoing.".format(direction))
if failed not in ["all", False, True]:
raise ValueError("{} is not a valid vector failed".format(failed))
if failed == "all":
if direction == "all":
return Vector.query\
.filter(or_(Vector.destination_id == self.id,
Vector.origin_id == self.id))\
.all()
if direction == "incoming":
return Vector.query\
.filter_by(destination_id=self.id)\
.all()
if direction == "outgoing":
return Vector.query\
.filter_by(origin_id=self.id)\
.all()
else:
if direction == "all":
return Vector.query\
.filter(and_(Vector.failed == failed,
or_(Vector.destination_id == self.id,
Vector.origin_id == self.id)))\
.all()
if direction == "incoming":
return Vector.query\
.filter_by(destination_id=self.id, failed=failed)\
.all()
if direction == "outgoing":
return Vector.query\
.filter_by(origin_id=self.id, failed=failed)\
.all() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'transmissions'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '7', 'type': 'string', 'children': [], 'value': '"outgoing"'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '10', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '36', '57', '75', '170', '238']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '22']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'not'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '18', 'type': 'list', 'children': ['19', '20', '21'], 'value': '["incoming", "outgoing", "all"]'}, {'id': '19', 'type': 'string', 'children': [], 'value': '"incoming"'}; {'id': '20', 'type': 'string', 'children': [], 'value': '"outgoing"'}, {'id': '21', 'type': 'string', 'children': [], 'value': '"all"'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'parenthesized_expression', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '35'], 'value': '+'}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': '"You cannot get transmissions of direction {}."'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '35', 'type': 'string', 'children': [], 'value': '"Type can only be incoming, outgoing or all."'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '43']}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'not'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '39', 'type': 'list', 'children': ['40', '41', '42'], 'value': '["all", "pending", "received"]'}; {'id': '40', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '41', 'type': 'string', 'children': [], 'value': '"pending"'}; {'id': '42', 'type': 'string', 'children': [], 'value': '"received"'}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'raise_statement', 'children': ['45']}, {'id': '45', 'type': 'parenthesized_expression', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'binary_operator', 'children': ['50', '56'], 'value': '+'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'string', 'children': [], 'value': '"You cannot get transmission of status {}."'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '56', 'type': 'string', 'children': [], 'value': '"Status can only be pending, received or all"'}, {'id': '57', 'type': 'if_statement', 'children': ['58', '64']}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': 'not'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '60', 'type': 'list', 'children': ['61', '62', '63'], 'value': '["all", False, True]'}, {'id': '61', 'type': 'string', 'children': [], 'value': '"all"'}; {'id': '62', 'type': 'False', 'children': []}, {'id': '63', 'type': 'True', 'children': []}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'raise_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'string', 'children': [], 'value': '"{} is not a valid transmission failed"'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '75', 'type': 'if_statement', 'children': ['76', '79']}; {'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': '=='}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '78', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'if_statement', 'children': ['81', '84', '124']}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': '=='}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '83', 'type': 'string', 'children': [], 'value': '"all"'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'return_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '123']}, {'id': '87', 'type': 'attribute', 'children': ['88', '121', '122']}; {'id': '88', 'type': 'call', 'children': ['89', '95']}, {'id': '89', 'type': 'attribute', 'children': ['90', '93', '94']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '93', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'and_'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '104']}, {'id': '99', 'type': 'comparison_operator', 'children': ['100', '103'], 'value': '=='}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '103', 'type': 'False', 'children': []}; {'id': '104', 'type': 'call', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'or_'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '114']}, {'id': '107', 'type': 'comparison_operator', 'children': ['108', '111'], 'value': '=='}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'destination_id'}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '114', 'type': 'comparison_operator', 'children': ['115', '118'], 'value': '=='}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'origin_id'}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '121', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '123', 'type': 'argument_list', 'children': []}; {'id': '124', 'type': 'else_clause', 'children': ['125']}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'return_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '169']}; {'id': '128', 'type': 'attribute', 'children': ['129', '167', '168']}, {'id': '129', 'type': 'call', 'children': ['130', '136']}; {'id': '130', 'type': 'attribute', 'children': ['131', '134', '135']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '134', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'and_'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '145', '150']}; {'id': '140', 'type': 'comparison_operator', 'children': ['141', '144'], 'value': '=='}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '144', 'type': 'False', 'children': []}, {'id': '145', 'type': 'comparison_operator', 'children': ['146', '149'], 'value': '=='}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '150', 'type': 'call', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'or_'}; {'id': '152', 'type': 'argument_list', 'children': ['153', '160']}, {'id': '153', 'type': 'comparison_operator', 'children': ['154', '157'], 'value': '=='}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'destination_id'}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '160', 'type': 'comparison_operator', 'children': ['161', '164'], 'value': '=='}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'origin_id'}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '167', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '169', 'type': 'argument_list', 'children': []}; {'id': '170', 'type': 'if_statement', 'children': ['171', '174']}, {'id': '171', 'type': 'comparison_operator', 'children': ['172', '173'], 'value': '=='}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '173', 'type': 'string', 'children': [], 'value': '"incoming"'}; {'id': '174', 'type': 'block', 'children': ['175']}, {'id': '175', 'type': 'if_statement', 'children': ['176', '179', '202']}; {'id': '176', 'type': 'comparison_operator', 'children': ['177', '178'], 'value': '=='}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '178', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '179', 'type': 'block', 'children': ['180']}; {'id': '180', 'type': 'return_statement', 'children': ['181']}, {'id': '181', 'type': 'call', 'children': ['182', '201']}; {'id': '182', 'type': 'attribute', 'children': ['183', '199', '200']}, {'id': '183', 'type': 'call', 'children': ['184', '190']}; {'id': '184', 'type': 'attribute', 'children': ['185', '188', '189']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '188', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'filter_by'}; {'id': '190', 'type': 'argument_list', 'children': ['191', '194']}, {'id': '191', 'type': 'keyword_argument', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '193', 'type': 'False', 'children': []}; {'id': '194', 'type': 'keyword_argument', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'destination_id'}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '199', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '201', 'type': 'argument_list', 'children': []}; {'id': '202', 'type': 'else_clause', 'children': ['203']}, {'id': '203', 'type': 'block', 'children': ['204']}; {'id': '204', 'type': 'return_statement', 'children': ['205']}, {'id': '205', 'type': 'call', 'children': ['206', '237']}; {'id': '206', 'type': 'attribute', 'children': ['207', '235', '236']}, {'id': '207', 'type': 'call', 'children': ['208', '214']}; {'id': '208', 'type': 'attribute', 'children': ['209', '212', '213']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '212', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'call', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'and_'}, {'id': '217', 'type': 'argument_list', 'children': ['218', '223', '230']}; {'id': '218', 'type': 'comparison_operator', 'children': ['219', '222'], 'value': '=='}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '222', 'type': 'False', 'children': []}, {'id': '223', 'type': 'comparison_operator', 'children': ['224', '227'], 'value': '=='}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'destination_id'}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '230', 'type': 'comparison_operator', 'children': ['231', '234'], 'value': '=='}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '235', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '237', 'type': 'argument_list', 'children': []}; {'id': '238', 'type': 'if_statement', 'children': ['239', '242']}, {'id': '239', 'type': 'comparison_operator', 'children': ['240', '241'], 'value': '=='}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '241', 'type': 'string', 'children': [], 'value': '"outgoing"'}; {'id': '242', 'type': 'block', 'children': ['243']}, {'id': '243', 'type': 'if_statement', 'children': ['244', '247', '270']}; {'id': '244', 'type': 'comparison_operator', 'children': ['245', '246'], 'value': '=='}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '246', 'type': 'string', 'children': [], 'value': '"all"'}, {'id': '247', 'type': 'block', 'children': ['248']}; {'id': '248', 'type': 'return_statement', 'children': ['249']}, {'id': '249', 'type': 'call', 'children': ['250', '269']}; {'id': '250', 'type': 'attribute', 'children': ['251', '267', '268']}, {'id': '251', 'type': 'call', 'children': ['252', '258']}; {'id': '252', 'type': 'attribute', 'children': ['253', '256', '257']}, {'id': '253', 'type': 'attribute', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '256', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'filter_by'}; {'id': '258', 'type': 'argument_list', 'children': ['259', '262']}, {'id': '259', 'type': 'keyword_argument', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'failed'}, {'id': '261', 'type': 'False', 'children': []}; {'id': '262', 'type': 'keyword_argument', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'origin_id'}; {'id': '264', 'type': 'attribute', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '267', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '269', 'type': 'argument_list', 'children': []}; {'id': '270', 'type': 'else_clause', 'children': ['271']}, {'id': '271', 'type': 'block', 'children': ['272']}; {'id': '272', 'type': 'return_statement', 'children': ['273']}, {'id': '273', 'type': 'call', 'children': ['274', '305']}; {'id': '274', 'type': 'attribute', 'children': ['275', '303', '304']}, {'id': '275', 'type': 'call', 'children': ['276', '282']}; {'id': '276', 'type': 'attribute', 'children': ['277', '280', '281']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '280', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '282', 'type': 'argument_list', 'children': ['283']}, {'id': '283', 'type': 'call', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'and_'}, {'id': '285', 'type': 'argument_list', 'children': ['286', '291', '298']}; {'id': '286', 'type': 'comparison_operator', 'children': ['287', '290'], 'value': '=='}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'failed'}; {'id': '290', 'type': 'False', 'children': []}, {'id': '291', 'type': 'comparison_operator', 'children': ['292', '295'], 'value': '=='}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'Transmission'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'origin_id'}, {'id': '295', 'type': 'attribute', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '298', 'type': 'comparison_operator', 'children': ['299', '302'], 'value': '=='}, {'id': '299', 'type': 'attribute', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'Transmission'}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'status'}, {'id': '303', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '305', 'type': 'argument_list', 'children': []} | def transmissions(self, direction="outgoing", status="all", failed=False):
if direction not in ["incoming", "outgoing", "all"]:
raise(ValueError("You cannot get transmissions of direction {}."
.format(direction) +
"Type can only be incoming, outgoing or all."))
if status not in ["all", "pending", "received"]:
raise(ValueError("You cannot get transmission of status {}."
.format(status) +
"Status can only be pending, received or all"))
if failed not in ["all", False, True]:
raise ValueError("{} is not a valid transmission failed"
.format(failed))
if direction == "all":
if status == "all":
return Transmission.query\
.filter(and_(Transmission.failed == False,
or_(Transmission.destination_id == self.id,
Transmission.origin_id == self.id)))\
.all()
else:
return Transmission.query\
.filter(and_(Transmission.failed == False,
Transmission.status == status,
or_(Transmission.destination_id == self.id,
Transmission.origin_id == self.id)))\
.all()
if direction == "incoming":
if status == "all":
return Transmission.query\
.filter_by(failed=False, destination_id=self.id)\
.all()
else:
return Transmission.query\
.filter(and_(Transmission.failed == False,
Transmission.destination_id == self.id,
Transmission.status == status))\
.all()
if direction == "outgoing":
if status == "all":
return Transmission.query\
.filter_by(failed=False, origin_id=self.id)\
.all()
else:
return Transmission.query\
.filter(and_(Transmission.failed == False,
Transmission.origin_id == self.id,
Transmission.status == status))\
.all() |
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{'id': '14', 'type': 'dictionary', 'children': []}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'if_statement', 'children': ['20', '25']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '24'], 'value': '=='}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '24', 'type': 'string', 'children': [], 'value': '"POST"'}, {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '29', 'type': 'subscript', 'children': ['30', '43']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'json'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'loads'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'body'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'string', 'children': [], 'value': '"utf-8"'}, {'id': '43', 'type': 'string', 'children': [], 'value': '"filters"'}; {'id': '44', 'type': 'if_statement', 'children': ['45', '50']}, {'id': '45', 'type': 'comparison_operator', 'children': ['46', '47'], 'value': 'in'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"filters"'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'GET'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'load_query_json'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'GET'}; {'id': '60', 'type': 'string', 'children': [], 'value': '"filters"'}, {'id': '61', 'type': 'if_statement', 'children': ['62', '65']}; {'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': 'is'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '64', 'type': 'None', 'children': []}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71', '72', '75']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '71', 'type': 'dictionary', 'children': []}; {'id': '72', 'type': 'keyword_argument', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '74', 'type': 'string', 'children': [], 'value': "'models_user_stats.html'"}, {'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'help_text'}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'user_stats'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': '__doc__'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'environment'}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'get_environment'}, {'id': '85', 'type': 'argument_list', 'children': []}; {'id': '86', 'type': 'if_statement', 'children': ['87', '91']}, {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'is_time_overridden'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '91', 'type': 'block', 'children': ['92']}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'shift_time'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'get_time'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'get_user_id'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'get_language'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '121']}; {'id': '118', 'type': 'pattern_list', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'filter_names'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'filter_filters'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'list_splat', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '130', 'type': 'argument_list', 'children': ['131']}, {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '135', 'type': 'argument_list', 'children': []}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'assignment', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'reachable_leaves'}, {'id': '139', 'type': 'call', 'children': ['140', '145']}; {'id': '140', 'type': 'attribute', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'Item'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'filter_all_reachable_leaves_many'}, {'id': '145', 'type': 'argument_list', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'filter_filters'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'language'}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'all_leaves'}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'reachable_leaves'}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'answers'}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'number_of_answers_more_items'}, {'id': '171', 'type': 'argument_list', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'all_leaves'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'correct_answers'}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'number_of_correct_answers_more_items'}, {'id': '181', 'type': 'argument_list', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'all_leaves'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '184', 'type': 'if_statement', 'children': ['185', '193']}, {'id': '185', 'type': 'call', 'children': ['186', '191']}; {'id': '186', 'type': 'attribute', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'GET'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'string', 'children': [], 'value': '"mastered"'}, {'id': '193', 'type': 'block', 'children': ['194', '199', '205', '218', '238']}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'call', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'timer'}, {'id': '197', 'type': 'argument_list', 'children': ['198']}; {'id': '198', 'type': 'string', 'children': [], 'value': "'user_stats_mastered'"}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'assignment', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'mastery_threshold'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'get_mastery_trashold'}; {'id': '204', 'type': 'argument_list', 'children': []}, {'id': '205', 'type': 'expression_statement', 'children': ['206']}; {'id': '206', 'type': 'assignment', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'predictions'}; {'id': '208', 'type': 'call', 'children': ['209', '214']}, {'id': '209', 'type': 'attribute', 'children': ['210', '213']}; {'id': '210', 'type': 'attribute', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'Item'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'predict_for_overview'}; {'id': '214', 'type': 'argument_list', 'children': ['215', '216', '217']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'environment'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'user_id'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'all_leaves'}; {'id': '218', 'type': 'expression_statement', 'children': ['219']}, {'id': '219', 'type': 'assignment', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'mastered'}, {'id': '221', 'type': 'call', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'dict'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'call', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '226', 'type': 'argument_list', 'children': ['227']}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'all_leaves'}, {'id': '231', 'type': 'list_comprehension', 'children': ['232', '235']}; {'id': '232', 'type': 'comparison_operator', 'children': ['233', '234'], 'value': '>='}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'mastery_threshold'}, {'id': '235', 'type': 'for_in_clause', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'predictions'}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '243', 'type': 'argument_list', 'children': ['244', '245']}; {'id': '244', 'type': 'string', 'children': [], 'value': '"user_stats - getting predictions for items took %s seconds"'}, {'id': '245', 'type': 'parenthesized_expression', 'children': ['246']}; {'id': '246', 'type': 'call', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'timer'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'string', 'children': [], 'value': "'user_stats_mastered'"}; {'id': '250', 'type': 'for_statement', 'children': ['251', '254', '259']}, {'id': '251', 'type': 'pattern_list', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'identifier'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '254', 'type': 'call', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '256', 'type': 'argument_list', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'filter_names'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'reachable_leaves'}, {'id': '259', 'type': 'block', 'children': ['260']}; {'id': '260', 'type': 'if_statement', 'children': ['261', '267', '282']}, {'id': '261', 'type': 'comparison_operator', 'children': ['262', '266'], 'value': '=='}; {'id': '262', 'type': 'call', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '266', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '267', 'type': 'block', 'children': ['268']}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'assignment', 'children': ['270', '273']}; {'id': '270', 'type': 'subscript', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'identifier'}, {'id': '273', 'type': 'dictionary', 'children': ['274', '279']}; {'id': '274', 'type': 'pair', 'children': ['275', '276']}, {'id': '275', 'type': 'string', 'children': [], 'value': '"filter"'}; {'id': '276', 'type': 'subscript', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'identifier'}, {'id': '279', 'type': 'pair', 'children': ['280', '281']}; {'id': '280', 'type': 'string', 'children': [], 'value': '"number_of_items"'}, {'id': '281', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '282', 'type': 'else_clause', 'children': ['283']}, {'id': '283', 'type': 'block', 'children': ['284', '336']}; {'id': '284', 'type': 'expression_statement', 'children': ['285']}, {'id': '285', 'type': 'assignment', 'children': ['286', '289']}; {'id': '286', 'type': 'subscript', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'identifier'}, {'id': '289', 'type': 'dictionary', 'children': ['290', '295', '301', '314', '325']}; {'id': '290', 'type': 'pair', 'children': ['291', '292']}, {'id': '291', 'type': 'string', 'children': [], 'value': '"filter"'}; {'id': '292', 'type': 'subscript', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'identifier'}, {'id': '295', 'type': 'pair', 'children': ['296', '297']}; {'id': '296', 'type': 'string', 'children': [], 'value': '"number_of_items"'}, {'id': '297', 'type': 'call', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '299', 'type': 'argument_list', 'children': ['300']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '301', 'type': 'pair', 'children': ['302', '303']}; {'id': '302', 'type': 'string', 'children': [], 'value': '"number_of_practiced_items"'}, {'id': '303', 'type': 'call', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '305', 'type': 'generator_expression', 'children': ['306', '311']}; {'id': '306', 'type': 'comparison_operator', 'children': ['307', '310'], 'value': '>'}, {'id': '307', 'type': 'subscript', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'answers'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '310', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '311', 'type': 'for_in_clause', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '314', 'type': 'pair', 'children': ['315', '316']}, {'id': '315', 'type': 'string', 'children': [], 'value': '"number_of_answers"'}; {'id': '316', 'type': 'call', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '318', 'type': 'generator_expression', 'children': ['319', '322']}, {'id': '319', 'type': 'subscript', 'children': ['320', '321']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'answers'}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '322', 'type': 'for_in_clause', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '325', 'type': 'pair', 'children': ['326', '327']}; {'id': '326', 'type': 'string', 'children': [], 'value': '"number_of_correct_answers"'}, {'id': '327', 'type': 'call', 'children': ['328', '329']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '329', 'type': 'generator_expression', 'children': ['330', '333']}; {'id': '330', 'type': 'subscript', 'children': ['331', '332']}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'correct_answers'}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '333', 'type': 'for_in_clause', 'children': ['334', '335']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '336', 'type': 'if_statement', 'children': ['337', '345']}, {'id': '337', 'type': 'call', 'children': ['338', '343']}; {'id': '338', 'type': 'attribute', 'children': ['339', '342']}, {'id': '339', 'type': 'attribute', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'GET'}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '343', 'type': 'argument_list', 'children': ['344']}; {'id': '344', 'type': 'string', 'children': [], 'value': '"mastered"'}, {'id': '345', 'type': 'block', 'children': ['346']}; {'id': '346', 'type': 'expression_statement', 'children': ['347']}, {'id': '347', 'type': 'assignment', 'children': ['348', '353']}; {'id': '348', 'type': 'subscript', 'children': ['349', '352']}, {'id': '349', 'type': 'subscript', 'children': ['350', '351']}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'identifier'}; {'id': '352', 'type': 'string', 'children': [], 'value': '"number_of_mastered_items"'}, {'id': '353', 'type': 'call', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '355', 'type': 'generator_expression', 'children': ['356', '359']}; {'id': '356', 'type': 'subscript', 'children': ['357', '358']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'mastered'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '359', 'type': 'for_in_clause', 'children': ['360', '361']}; {'id': '360', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '362', 'type': 'return_statement', 'children': ['363']}, {'id': '363', 'type': 'call', 'children': ['364', '365']}; {'id': '364', 'type': 'identifier', 'children': [], 'value': 'render_json'}, {'id': '365', 'type': 'argument_list', 'children': ['366', '367', '368', '371']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '368', 'type': 'keyword_argument', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '370', 'type': 'string', 'children': [], 'value': "'models_user_stats.html'"}, {'id': '371', 'type': 'keyword_argument', 'children': ['372', '373']}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'help_text'}, {'id': '373', 'type': 'attribute', 'children': ['374', '375']}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'user_stats'}, {'id': '375', 'type': 'identifier', 'children': [], 'value': '__doc__'} | def user_stats(request):
timer('user_stats')
response = {}
data = None
if request.method == "POST":
data = json.loads(request.body.decode("utf-8"))["filters"]
if "filters" in request.GET:
data = load_query_json(request.GET, "filters")
if data is None:
return render_json(request, {}, template='models_user_stats.html', help_text=user_stats.__doc__)
environment = get_environment()
if is_time_overridden(request):
environment.shift_time(get_time(request))
user_id = get_user_id(request)
language = get_language(request)
filter_names, filter_filters = list(zip(*sorted(data.items())))
reachable_leaves = Item.objects.filter_all_reachable_leaves_many(filter_filters, language)
all_leaves = sorted(list(set(flatten(reachable_leaves))))
answers = environment.number_of_answers_more_items(all_leaves, user_id)
correct_answers = environment.number_of_correct_answers_more_items(all_leaves, user_id)
if request.GET.get("mastered"):
timer('user_stats_mastered')
mastery_threshold = get_mastery_trashold()
predictions = Item.objects.predict_for_overview(environment, user_id, all_leaves)
mastered = dict(list(zip(all_leaves, [p >= mastery_threshold for p in predictions])))
LOGGER.debug("user_stats - getting predictions for items took %s seconds", (timer('user_stats_mastered')))
for identifier, items in zip(filter_names, reachable_leaves):
if len(items) == 0:
response[identifier] = {
"filter": data[identifier],
"number_of_items": 0,
}
else:
response[identifier] = {
"filter": data[identifier],
"number_of_items": len(items),
"number_of_practiced_items": sum(answers[i] > 0 for i in items),
"number_of_answers": sum(answers[i] for i in items),
"number_of_correct_answers": sum(correct_answers[i] for i in items),
}
if request.GET.get("mastered"):
response[identifier]["number_of_mastered_items"]= sum(mastered[i] for i in items)
return render_json(request, response, template='models_user_stats.html', help_text=user_stats.__doc__) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_resource'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'output_model'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rtype'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'links'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'existing_ids'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'id_helper'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '17', '61', '82', '96', '117', '126', '141']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'''\n General-purpose routine to create a new resource in the output model, based on data provided\n output_model - Versa connection to model to be updated\n rtype - Type IRI for the new resource, set with Versa type\n unique - list of key/value pairs for determining a unique hash for the new resource\n links - list of key/value pairs for setting properties on the new resource\n id_helper - If a string, a base URL for the generatd ID. If callable, a function used to return the entity. If None, set a default good enough for testing.\n existing_ids - set of existing IDs to not recreate, or None, in which case a new resource will always be created\n '''"}, {'id': '17', 'type': 'if_statement', 'children': ['18', '23', '31', '42', '54']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'id_helper'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'idg'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'idgen'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'id_helper'}, {'id': '31', 'type': 'elif_clause', 'children': ['32', '37']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'id_helper'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'GeneratorType'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'idg'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'id_helper'}; {'id': '42', 'type': 'elif_clause', 'children': ['43', '46']}, {'id': '43', 'type': 'comparison_operator', 'children': ['44', '45'], 'value': 'is'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'id_helper'}, {'id': '45', 'type': 'None', 'children': []}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'idg'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'default_idgen'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'None', 'children': []}; {'id': '54', 'type': 'else_clause', 'children': ['55']}, {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'raise_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'string', 'children': [], 'value': "'id_helper must be string (URL), callable or None'"}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '68', '69', '70', '73', '76', '79']}, {'id': '67', 'type': 'None', 'children': []}; {'id': '68', 'type': 'None', 'children': []}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'output_model'}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '72', 'type': 'None', 'children': []}, {'id': '73', 'type': 'keyword_argument', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'idgen'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'idg'}; {'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'existing_ids'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'existing_ids'}, {'id': '79', 'type': 'keyword_argument', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'extras'}, {'id': '81', 'type': 'None', 'children': []}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'rid'}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'I'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'materialize_entity'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92', '93']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'rtype'}, {'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '100']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '99'], 'value': 'is'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'existing_ids'}, {'id': '99', 'type': 'None', 'children': []}; {'id': '100', 'type': 'block', 'children': ['101', '110']}, {'id': '101', 'type': 'if_statement', 'children': ['102', '105']}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': 'in'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'rid'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'existing_ids'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'return_statement', 'children': ['107']}, {'id': '107', 'type': 'tuple', 'children': ['108', '109']}; {'id': '108', 'type': 'False', 'children': []}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'rid'}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'call', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'existing_ids'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'rid'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'output_model'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124', '125']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'rid'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'VTYPE_REL'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'rtype'}; {'id': '126', 'type': 'for_statement', 'children': ['127', '130', '131']}, {'id': '127', 'type': 'pattern_list', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'links'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'output_model'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '137', 'type': 'argument_list', 'children': ['138', '139', '140']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'rid'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '141', 'type': 'return_statement', 'children': ['142']}; {'id': '142', 'type': 'tuple', 'children': ['143', '144']}, {'id': '143', 'type': 'True', 'children': []} | def create_resource(output_model, rtype, unique, links, existing_ids=None, id_helper=None):
'''
General-purpose routine to create a new resource in the output model, based on data provided
output_model - Versa connection to model to be updated
rtype - Type IRI for the new resource, set with Versa type
unique - list of key/value pairs for determining a unique hash for the new resource
links - list of key/value pairs for setting properties on the new resource
id_helper - If a string, a base URL for the generatd ID. If callable, a function used to return the entity. If None, set a default good enough for testing.
existing_ids - set of existing IDs to not recreate, or None, in which case a new resource will always be created
'''
if isinstance(id_helper, str):
idg = idgen(id_helper)
elif isinstance(id_helper, GeneratorType):
idg = id_helper
elif id_helper is None:
idg = default_idgen(None)
else:
raise ValueError('id_helper must be string (URL), callable or None')
ctx = context(None, None, output_model, base=None, idgen=idg, existing_ids=existing_ids, extras=None)
rid = I(materialize_entity(ctx, rtype, unique=unique))
if existing_ids is not None:
if rid in existing_ids:
return (False, rid)
existing_ids.add(rid)
output_model.add(rid, VTYPE_REL, rtype)
for r, t in links:
output_model.add(rid, r, t)
return (True, rid) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'patterns'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '52', '58', '90', '101', '109', '125']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '20']}, {'id': '7', 'type': 'boolean_operator', 'children': ['8', '14'], 'value': 'and'}; {'id': '8', 'type': 'not_operator', 'children': ['9']}, {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'patterns'}; {'id': '14', 'type': 'not_operator', 'children': ['15']}, {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'pattern_files'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'try_statement', 'children': ['22', '43']}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '32']}, {'id': '25', 'type': 'attribute', 'children': ['26', '31']}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '41']}; {'id': '34', 'type': 'attribute', 'children': ['35', '40']}, {'id': '35', 'type': 'attribute', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '43', 'type': 'except_clause', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'IndexError'}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'raise_statement', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'LogRaptorArgumentError'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': "'PATTERN'"}, {'id': '51', 'type': 'string', 'children': [], 'value': "'no search pattern'"}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '57', 'type': 'argument_list', 'children': []}; {'id': '58', 'type': 'if_statement', 'children': ['59', '64']}, {'id': '59', 'type': 'attribute', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'pattern_files'}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'list_comprehension', 'children': ['72', '78']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'rstrip'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '78', 'type': 'for_in_clause', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'fileinput'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'input'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'attribute', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'pattern_files'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'patterns'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'attribute', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '106', 'type': 'argument_list', 'children': ['107', '108']}, {'id': '107', 'type': 'string', 'children': [], 'value': '"search patterns to be processed: %r"'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '109', 'type': 'if_statement', 'children': ['110', '113']}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': 'in'}, {'id': '111', 'type': 'string', 'children': [], 'value': "''"}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'patterns'}, {'id': '113', 'type': 'block', 'children': ['114', '121']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'string', 'children': [], 'value': '"an empty pattern provided: match all strings!"'}, {'id': '121', 'type': 'return_statement', 'children': ['122']}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '124', 'type': 'argument_list', 'children': []}, {'id': '125', 'type': 'try_statement', 'children': ['126', '174']}; {'id': '126', 'type': 'block', 'children': ['127', '144']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'flags'}; {'id': '130', 'type': 'conditional_expression', 'children': ['131', '134', '139'], 'value': 'if'}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'IGNORECASE'}; {'id': '134', 'type': 'attribute', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'case'}, {'id': '139', 'type': 'binary_operator', 'children': ['140', '141'], 'value': '|'}; {'id': '140', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'UNICODE'}; {'id': '144', 'type': 'return_statement', 'children': ['145']}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'list_comprehension', 'children': ['149', '169', '172']}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'compile'}, {'id': '153', 'type': 'argument_list', 'children': ['154', '166']}; {'id': '154', 'type': 'conditional_expression', 'children': ['155', '158', '163'], 'value': 'if'}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '157'], 'value': '%'}; {'id': '156', 'type': 'string', 'children': [], 'value': "r'(\\b%s\\b)'"}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'pat'}; {'id': '158', 'type': 'attribute', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'word'}, {'id': '163', 'type': 'binary_operator', 'children': ['164', '165'], 'value': '%'}; {'id': '164', 'type': 'string', 'children': [], 'value': "'(%s)'"}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'pat'}; {'id': '166', 'type': 'keyword_argument', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'flags'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'flags'}, {'id': '169', 'type': 'for_in_clause', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'pat'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'patterns'}; {'id': '172', 'type': 'if_clause', 'children': ['173']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'pat'}; {'id': '174', 'type': 'except_clause', 'children': ['175', '181']}, {'id': '175', 'type': 'as_pattern', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '179', 'type': 'as_pattern_target', 'children': ['180']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '181', 'type': 'block', 'children': ['182']}; {'id': '182', 'type': 'raise_statement', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'LogRaptorArgumentError'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'binary_operator', 'children': ['187', '188'], 'value': '%'}, {'id': '187', 'type': 'string', 'children': [], 'value': "'wrong regex syntax for pattern: %r'"} | def patterns(self):
if not self.args.patterns and not self.args.pattern_files:
try:
self.args.patterns.append(self.args.files.pop(0))
except IndexError:
raise LogRaptorArgumentError('PATTERN', 'no search pattern')
patterns = set()
if self.args.pattern_files:
patterns.update([p.rstrip('\n') for p in fileinput.input(self.args.pattern_files)])
patterns.update(self.args.patterns)
logger.debug("search patterns to be processed: %r", patterns)
if '' in patterns:
logger.info("an empty pattern provided: match all strings!")
return tuple()
try:
flags = re.IGNORECASE if self.args.case else 0 | re.UNICODE
return tuple([
re.compile(r'(\b%s\b)' % pat if self.args.word else '(%s)' % pat, flags=flags)
for pat in patterns if pat
])
except re.error as err:
raise LogRaptorArgumentError('wrong regex syntax for pattern: %r' % err) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'qualify'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'qualification'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'worker'}, {'id': '7', 'type': 'block', 'children': ['8', '15', '21', '27', '37', '47', '55', '121', '128', '138', '152', '181', '191', '198', '214', '224', '240']}; {'id': '8', 'type': 'import_from_statement', 'children': ['9', '13']}, {'id': '9', 'type': 'dotted_name', 'children': ['10', '11', '12']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'boto'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'mturk'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'connection'}, {'id': '13', 'type': 'dotted_name', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'MTurkConnection'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'PsiturkConfig'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'load_config'}; {'id': '26', 'type': 'argument_list', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'aws_access_key_id'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'AWS Access'"}; {'id': '36', 'type': 'string', 'children': [], 'value': "'aws_access_key_id'"}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'aws_secret_access_key'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'string', 'children': [], 'value': "'AWS Access'"}; {'id': '46', 'type': 'string', 'children': [], 'value': "'aws_secret_access_key'"}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'MTurkConnection'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'aws_access_key_id'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'aws_secret_access_key'}, {'id': '55', 'type': 'function_definition', 'children': ['56', '57', '59']}; {'id': '56', 'type': 'function_name', 'children': [], 'value': 'get_workers_with_qualification'}, {'id': '57', 'type': 'parameters', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'qualification'}, {'id': '59', 'type': 'block', 'children': ['60', '64', '68', '72', '119']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '63', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'continue_flag'}, {'id': '67', 'type': 'True', 'children': []}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '72', 'type': 'while_statement', 'children': ['73', '75']}, {'id': '73', 'type': 'parenthesized_expression', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'continue_flag'}, {'id': '75', 'type': 'block', 'children': ['76', '91']}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'assignment', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'new_results'}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'get_qualifications_for_qualification_type'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '85', '88']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'qualification'}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'page_size'}, {'id': '87', 'type': 'integer', 'children': [], 'value': '100'}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'page_number'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '91', 'type': 'if_statement', 'children': ['92', '99', '104']}; {'id': '92', 'type': 'parenthesized_expression', 'children': ['93']}, {'id': '93', 'type': 'comparison_operator', 'children': ['94', '98'], 'value': '=='}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'new_results'}; {'id': '98', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'continue_flag'}, {'id': '103', 'type': 'False', 'children': []}; {'id': '104', 'type': 'else_clause', 'children': ['105']}, {'id': '105', 'type': 'block', 'children': ['106', '113']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'extend'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'new_results'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'page'}; {'id': '116', 'type': 'binary_operator', 'children': ['117', '118'], 'value': '+'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'page'}; {'id': '118', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '119', 'type': 'return_statement', 'children': ['120']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '124', 'type': 'call', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'get_workers_with_qualification'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'qualification'}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}, {'id': '129', 'type': 'assignment', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'workers'}, {'id': '131', 'type': 'list_comprehension', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'SubjectId'}, {'id': '135', 'type': 'for_in_clause', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'string', 'children': [], 'value': '"Assigning qualification {} with value {} to worker {}"'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '148', 'type': 'argument_list', 'children': ['149', '150', '151']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'qualification'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'worker'}; {'id': '152', 'type': 'if_statement', 'children': ['153', '156', '168']}, {'id': '153', 'type': 'comparison_operator', 'children': ['154', '155'], 'value': 'in'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'worker'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'workers'}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'conn'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'update_qualification_score'}; {'id': '164', 'type': 'argument_list', 'children': ['165', '166', '167']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'qualification'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'worker'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '168', 'type': 'else_clause', 'children': ['169']}, {'id': '169', 'type': 'block', 'children': ['170']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'assignment', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '173', 'type': 'call', 'children': ['174', '177']}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'assign_qualification'}, {'id': '177', 'type': 'argument_list', 'children': ['178', '179', '180']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'qualification'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'worker'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '181', 'type': 'if_statement', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '183', 'type': 'block', 'children': ['184']}; {'id': '184', 'type': 'expression_statement', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '194', 'type': 'call', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'get_workers_with_qualification'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'qualification'}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'string', 'children': [], 'value': '"{} workers with qualification {}:"'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '208', 'type': 'argument_list', 'children': ['209', '213']}, {'id': '209', 'type': 'call', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '211', 'type': 'argument_list', 'children': ['212']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'qualification'}; {'id': '214', 'type': 'expression_statement', 'children': ['215']}, {'id': '215', 'type': 'assignment', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '217', 'type': 'list_comprehension', 'children': ['218', '221']}; {'id': '218', 'type': 'attribute', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'IntegerValue'}, {'id': '221', 'type': 'for_in_clause', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'assignment', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'unique_values'}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '229', 'type': 'argument_list', 'children': ['230']}; {'id': '230', 'type': 'call', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '232', 'type': 'argument_list', 'children': ['233']}, {'id': '233', 'type': 'list_comprehension', 'children': ['234', '237']}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'r'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'IntegerValue'}, {'id': '237', 'type': 'for_in_clause', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '240', 'type': 'for_statement', 'children': ['241', '242', '243']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'unique_values'}, {'id': '243', 'type': 'block', 'children': ['244']}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'call', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '249', 'type': 'argument_list', 'children': ['250']}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'string', 'children': [], 'value': '"{} with value {}"'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '254', 'type': 'argument_list', 'children': ['255', '267']}, {'id': '255', 'type': 'call', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '257', 'type': 'argument_list', 'children': ['258']}; {'id': '258', 'type': 'list_comprehension', 'children': ['259', '260', '263']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '260', 'type': 'for_in_clause', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '263', 'type': 'if_clause', 'children': ['264']}; {'id': '264', 'type': 'comparison_operator', 'children': ['265', '266'], 'value': '=='}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'val'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'v'} | def qualify(qualification, value, worker):
from boto.mturk.connection import MTurkConnection
config = PsiturkConfig()
config.load_config()
aws_access_key_id = config.get('AWS Access', 'aws_access_key_id')
aws_secret_access_key = config.get('AWS Access', 'aws_secret_access_key')
conn = MTurkConnection(aws_access_key_id, aws_secret_access_key)
def get_workers_with_qualification(qualification):
results = []
continue_flag = True
page = 1
while(continue_flag):
new_results = conn.get_qualifications_for_qualification_type(
qualification,
page_size=100,
page_number=page)
if(len(new_results) == 0):
continue_flag = False
else:
results.extend(new_results)
page = page + 1
return results
results = get_workers_with_qualification(qualification)
workers = [x.SubjectId for x in results]
click.echo(
"Assigning qualification {} with value {} to worker {}".format(
qualification,
value,
worker))
if worker in workers:
result = conn.update_qualification_score(qualification, worker, value)
else:
result = conn.assign_qualification(qualification, worker, value)
if result:
click.echo(result)
results = get_workers_with_qualification(qualification)
click.echo("{} workers with qualification {}:".format(
len(results),
qualification))
values = [r.IntegerValue for r in results]
unique_values = list(set([r.IntegerValue for r in results]))
for v in unique_values:
click.echo("{} with value {}".format(
len([val for val in values if val == v]),
v)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'setup_jobs'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'outpath'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'options'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '7', 'type': 'block', 'children': ['8', '10', '14', '18', '22', '142', '153', '161', '169', '173', '209', '220', '255', '286', '301', '338']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'string', 'children': [], 'value': "''' This function sets up the jobs by creating the necessary input files as expected.\n - outpath is where the output is to be stored.\n - options is the optparse options object.\n - input_files is a list of paths to input files.\n '''"}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'job_inputs'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'reverse_mapping'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fasta_file_contents'}, {'id': '21', 'type': 'dictionary', 'children': []}; {'id': '22', 'type': 'for_statement', 'children': ['23', '24', '25']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'input_files'}, {'id': '25', 'type': 'block', 'children': ['26', '36']}; {'id': '26', 'type': 'assert_statement', 'children': ['27']}, {'id': '27', 'type': 'parenthesized_expression', 'children': ['28']}; {'id': '28', 'type': 'not_operator', 'children': ['29']}, {'id': '29', 'type': 'parenthesized_expression', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'fasta_file_contents'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '48', '129']}, {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '39', 'type': 'generator_expression', 'children': ['40', '45']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'fnmatch'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '45', 'type': 'for_in_clause', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'pdb_file_wildcards'}; {'id': '48', 'type': 'block', 'children': ['49', '61', '81', '114']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'pdb'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'PDB'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'from_filepath'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '58', 'type': 'keyword_argument', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'strict'}; {'id': '60', 'type': 'True', 'children': []}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'pdb'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}; {'id': '66', 'type': 'subscript', 'children': ['67', '80']}, {'id': '67', 'type': 'call', 'children': ['68', '78']}; {'id': '68', 'type': 'attribute', 'children': ['69', '77']}, {'id': '69', 'type': 'call', 'children': ['70', '75']}; {'id': '70', 'type': 'attribute', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'input_file'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '80', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '81', 'type': 'if_statement', 'children': ['82', '99']}; {'id': '82', 'type': 'boolean_operator', 'children': ['83', '91'], 'value': 'and'}, {'id': '83', 'type': 'call', 'children': ['84', '89']}; {'id': '84', 'type': 'attribute', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'pdb'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'string', 'children': [], 'value': "'pdb'"}, {'id': '91', 'type': 'comparison_operator', 'children': ['92', '98'], 'value': '>='}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'pdb'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}; {'id': '98', 'type': 'integer', 'children': [], 'value': '7'}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'pdb'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}, {'id': '105', 'type': 'call', 'children': ['106', '111']}; {'id': '106', 'type': 'attribute', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'pdb'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '111', 'type': 'argument_list', 'children': ['112', '113']}; {'id': '112', 'type': 'string', 'children': [], 'value': "'pdb'"}, {'id': '113', 'type': 'string', 'children': [], 'value': "''"}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '119']}; {'id': '116', 'type': 'subscript', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'fasta_file_contents'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'input_file'}, {'id': '119', 'type': 'tuple', 'children': ['120', '128']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'pdb'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'create_fasta'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'prefer_seqres_order'}, {'id': '127', 'type': 'False', 'children': []}; {'id': '128', 'type': 'string', 'children': [], 'value': "'PDB'"}, {'id': '129', 'type': 'else_clause', 'children': ['130']}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '136']}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'fasta_file_contents'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'input_file'}; {'id': '136', 'type': 'tuple', 'children': ['137', '141']}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'read_file'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'input_file'}, {'id': '141', 'type': 'string', 'children': [], 'value': "'FASTA'"}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '148']}; {'id': '144', 'type': 'pattern_list', 'children': ['145', '146', '147']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'found_sequences'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'reverse_mapping'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'get_sequences'}; {'id': '150', 'type': 'argument_list', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'options'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'fasta_file_contents'}, {'id': '153', 'type': 'if_statement', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'found_sequences'}, {'id': '155', 'type': 'block', 'children': ['156']}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'call', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'reformat'}, {'id': '159', 'type': 'argument_list', 'children': ['160']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'found_sequences'}, {'id': '161', 'type': 'if_statement', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'errors'}, {'id': '163', 'type': 'block', 'children': ['164']}; {'id': '164', 'type': 'return_statement', 'children': ['165']}, {'id': '165', 'type': 'expression_list', 'children': ['166', '167', '168']}; {'id': '166', 'type': 'None', 'children': []}, {'id': '167', 'type': 'False', 'children': []}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'errors'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'desired_sequences'}; {'id': '172', 'type': 'dictionary', 'children': []}, {'id': '173', 'type': 'for_statement', 'children': ['174', '177', '182']}; {'id': '174', 'type': 'pattern_list', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'sequence'}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'found_sequences'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '181', 'type': 'argument_list', 'children': []}; {'id': '182', 'type': 'block', 'children': ['183', '190']}, {'id': '183', 'type': 'expression_statement', 'children': ['184']}; {'id': '184', 'type': 'assignment', 'children': ['185', '189']}, {'id': '185', 'type': 'pattern_list', 'children': ['186', '187', '188']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'pdb_id'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'file_name'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '190', 'type': 'if_statement', 'children': ['191', '202']}, {'id': '191', 'type': 'boolean_operator', 'children': ['192', '197'], 'value': 'or'}; {'id': '192', 'type': 'comparison_operator', 'children': ['193', '196'], 'value': 'is'}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'options'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '196', 'type': 'None', 'children': []}, {'id': '197', 'type': 'comparison_operator', 'children': ['198', '199'], 'value': '=='}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'chain'}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'options'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'chain'}; {'id': '202', 'type': 'block', 'children': ['203']}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'assignment', 'children': ['205', '208']}, {'id': '205', 'type': 'subscript', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'desired_sequences'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'sequence'}, {'id': '209', 'type': 'expression_statement', 'children': ['210']}; {'id': '210', 'type': 'assignment', 'children': ['211', '214']}, {'id': '211', 'type': 'pattern_list', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'job_inputs'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '214', 'type': 'call', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'create_inputs'}; {'id': '216', 'type': 'argument_list', 'children': ['217', '218', '219']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'options'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'outpath'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'desired_sequences'}; {'id': '220', 'type': 'if_statement', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'reverse_mapping'}; {'id': '222', 'type': 'block', 'children': ['223', '235', '244']}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'assignment', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'segment_mapping_file'}; {'id': '226', 'type': 'call', 'children': ['227', '232']}, {'id': '227', 'type': 'attribute', 'children': ['228', '231']}; {'id': '228', 'type': 'attribute', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '232', 'type': 'argument_list', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'outpath'}; {'id': '234', 'type': 'string', 'children': [], 'value': '"segment_map.json"'}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'colorprinter'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'message'}; {'id': '240', 'type': 'argument_list', 'children': ['241']}, {'id': '241', 'type': 'binary_operator', 'children': ['242', '243'], 'value': '%'}; {'id': '242', 'type': 'string', 'children': [], 'value': '"Creating a reverse mapping file %s."'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'segment_mapping_file'}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'call', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'write_file'}, {'id': '247', 'type': 'argument_list', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'segment_mapping_file'}, {'id': '249', 'type': 'call', 'children': ['250', '253']}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'dumps'}, {'id': '253', 'type': 'argument_list', 'children': ['254']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'reverse_mapping'}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'assignment', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'post_processing_script'}; {'id': '258', 'type': 'call', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'read_file'}; {'id': '260', 'type': 'argument_list', 'children': ['261']}, {'id': '261', 'type': 'call', 'children': ['262', '267']}; {'id': '262', 'type': 'attribute', 'children': ['263', '266']}, {'id': '263', 'type': 'attribute', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '267', 'type': 'argument_list', 'children': ['268', '285']}; {'id': '268', 'type': 'subscript', 'children': ['269', '284']}, {'id': '269', 'type': 'call', 'children': ['270', '275']}; {'id': '270', 'type': 'attribute', 'children': ['271', '274']}, {'id': '271', 'type': 'attribute', 'children': ['272', '273']}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '275', 'type': 'argument_list', 'children': ['276']}; {'id': '276', 'type': 'call', 'children': ['277', '282']}, {'id': '277', 'type': 'attribute', 'children': ['278', '281']}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'realpath'}; {'id': '282', 'type': 'argument_list', 'children': ['283']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': '__file__'}; {'id': '284', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '285', 'type': 'string', 'children': [], 'value': "'post_processing.py'"}; {'id': '286', 'type': 'expression_statement', 'children': ['287']}, {'id': '287', 'type': 'call', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'write_file'}, {'id': '289', 'type': 'argument_list', 'children': ['290', '299', '300']}; {'id': '290', 'type': 'call', 'children': ['291', '296']}, {'id': '291', 'type': 'attribute', 'children': ['292', '295']}; {'id': '292', 'type': 'attribute', 'children': ['293', '294']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '296', 'type': 'argument_list', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'outpath'}; {'id': '298', 'type': 'string', 'children': [], 'value': "'post_processing.py'"}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'post_processing_script'}; {'id': '300', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '301', 'type': 'if_statement', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'options'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'secondary_structure_file'}, {'id': '305', 'type': 'block', 'children': ['306']}; {'id': '306', 'type': 'expression_statement', 'children': ['307']}, {'id': '307', 'type': 'call', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'write_file'}, {'id': '309', 'type': 'argument_list', 'children': ['310', '319', '337']}; {'id': '310', 'type': 'call', 'children': ['311', '316']}, {'id': '311', 'type': 'attribute', 'children': ['312', '315']}; {'id': '312', 'type': 'attribute', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '316', 'type': 'argument_list', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'outpath'}; {'id': '318', 'type': 'string', 'children': [], 'value': "'ss_filter.json'"}, {'id': '319', 'type': 'call', 'children': ['320', '323']}; {'id': '320', 'type': 'attribute', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'dumps'}, {'id': '323', 'type': 'argument_list', 'children': ['324']}; {'id': '324', 'type': 'dictionary', 'children': ['325']}, {'id': '325', 'type': 'pair', 'children': ['326', '327']}; {'id': '326', 'type': 'string', 'children': [], 'value': "'secondary_structure_filter'"}, {'id': '327', 'type': 'attribute', 'children': ['328', '336']}; {'id': '328', 'type': 'call', 'children': ['329', '332']}, {'id': '329', 'type': 'attribute', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'SecondaryStructureDefinition'}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'from_filepath'}; {'id': '332', 'type': 'argument_list', 'children': ['333']}, {'id': '333', 'type': 'attribute', 'children': ['334', '335']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'options'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'secondary_structure_file'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '337', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '338', 'type': 'return_statement', 'children': ['339']}, {'id': '339', 'type': 'expression_list', 'children': ['340', '341', '344']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'job_inputs'}, {'id': '341', 'type': 'comparison_operator', 'children': ['342', '343'], 'value': '!='}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'reverse_mapping'}, {'id': '343', 'type': 'None', 'children': []} | def setup_jobs(outpath, options, input_files):
''' This function sets up the jobs by creating the necessary input files as expected.
- outpath is where the output is to be stored.
- options is the optparse options object.
- input_files is a list of paths to input files.
'''
job_inputs = None
reverse_mapping = None
fasta_file_contents = {}
for input_file in input_files:
assert(not(fasta_file_contents.get(input_file)))
if any(fnmatch(input_file, x) for x in pdb_file_wildcards):
pdb = PDB.from_filepath(input_file, strict=True)
pdb.pdb_id = os.path.basename(input_file).split('.')[0]
if pdb.pdb_id.startswith('pdb') and len(pdb.pdb_id) >= 7:
pdb.pdb_id = pdb.pdb_id.replace('pdb', '')
fasta_file_contents[input_file] = (pdb.create_fasta(prefer_seqres_order = False), 'PDB')
else:
fasta_file_contents[input_file] = (read_file(input_file), 'FASTA')
found_sequences, reverse_mapping, errors = get_sequences(options, fasta_file_contents)
if found_sequences:
reformat(found_sequences)
if errors:
return None, False, errors
desired_sequences = {}
for key, sequence in found_sequences.iteritems():
pdb_id, chain, file_name = key
if options.chain is None or chain == options.chain:
desired_sequences[key] = sequence
job_inputs, errors = create_inputs(options, outpath, desired_sequences)
if reverse_mapping:
segment_mapping_file = os.path.join(outpath, "segment_map.json")
colorprinter.message("Creating a reverse mapping file %s." % segment_mapping_file)
write_file(segment_mapping_file, json.dumps(reverse_mapping))
post_processing_script = read_file(os.path.join(os.path.split(os.path.realpath(__file__))[0], 'post_processing.py'))
write_file(os.path.join(outpath, 'post_processing.py'), post_processing_script, 'w')
if options.secondary_structure_file:
write_file(os.path.join(outpath, 'ss_filter.json'), json.dumps({'secondary_structure_filter' : SecondaryStructureDefinition.from_filepath(options.secondary_structure_file).data}), 'w')
return job_inputs, reverse_mapping != None, errors |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_stdlib'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '7', '12', '49', '74', '96', '105', '192']}, {'id': '5', 'type': 'expression_statement', 'children': ['6']}; {'id': '6', 'type': 'string', 'children': [], 'value': "'''Scans sys.path for standard library modules.\n '''"}, {'id': '7', 'type': 'if_statement', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': '_stdlib'}, {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'return_statement', 'children': ['11']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': '_stdlib'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'prefixes'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'set_comprehension', 'children': ['19', '27']}, {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'abspath'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '27', 'type': 'for_in_clause', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '29', 'type': 'tuple', 'children': ['30', '33', '41']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37', '38']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '37', 'type': 'string', 'children': [], 'value': "'real_prefix'"}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45', '46']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '45', 'type': 'string', 'children': [], 'value': "'base_prefix'"}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '49', 'type': 'for_statement', 'children': ['50', '51', '54']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'sp'}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '54', 'type': 'block', 'children': ['55', '60']}, {'id': '55', 'type': 'if_statement', 'children': ['56', '58']}; {'id': '56', 'type': 'not_operator', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'sp'}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'continue_statement', 'children': []}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': '_import_paths'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '72']}, {'id': '67', 'type': 'attribute', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'abspath'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sp'}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'stdpaths'}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'set_comprehension', 'children': ['81', '82', '85']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '82', 'type': 'for_in_clause', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': '_import_paths'}, {'id': '85', 'type': 'if_clause', 'children': ['86']}; {'id': '86', 'type': 'boolean_operator', 'children': ['87', '93'], 'value': 'and'}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'prefixes'}, {'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': 'not'}; {'id': '94', 'type': 'string', 'children': [], 'value': "'site-packages'"}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': '_stdlib'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'builtin_module_names'}, {'id': '105', 'type': 'for_statement', 'children': ['106', '107', '108']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'stdpath'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'stdpaths'}; {'id': '108', 'type': 'block', 'children': ['109', '121']}, {'id': '109', 'type': 'if_statement', 'children': ['110', '119']}; {'id': '110', 'type': 'not_operator', 'children': ['111']}, {'id': '111', 'type': 'call', 'children': ['112', '117']}; {'id': '112', 'type': 'attribute', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'stdpath'}, {'id': '119', 'type': 'block', 'children': ['120']}; {'id': '120', 'type': 'continue_statement', 'children': []}, {'id': '121', 'type': 'for_statement', 'children': ['122', '123', '129']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'listdir'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'stdpath'}, {'id': '129', 'type': 'block', 'children': ['130', '143', '155', '177']}; {'id': '130', 'type': 'if_statement', 'children': ['131', '141']}, {'id': '131', 'type': 'boolean_operator', 'children': ['132', '138'], 'value': 'or'}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '138', 'type': 'comparison_operator', 'children': ['139', '140'], 'value': '=='}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '140', 'type': 'string', 'children': [], 'value': "'site-packages'"}, {'id': '141', 'type': 'block', 'children': ['142']}; {'id': '142', 'type': 'continue_statement', 'children': []}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '146', 'type': 'call', 'children': ['147', '152']}, {'id': '147', 'type': 'attribute', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '152', 'type': 'argument_list', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'stdpath'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '155', 'type': 'if_statement', 'children': ['156', '175']}; {'id': '156', 'type': 'boolean_operator', 'children': ['157', '166'], 'value': 'and'}, {'id': '157', 'type': 'not_operator', 'children': ['158']}; {'id': '158', 'type': 'call', 'children': ['159', '164']}, {'id': '159', 'type': 'attribute', 'children': ['160', '163']}; {'id': '160', 'type': 'attribute', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'isdir'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '166', 'type': 'not_operator', 'children': ['167']}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'endswith'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'tuple', 'children': ['173', '174']}, {'id': '173', 'type': 'string', 'children': [], 'value': "'.py'"}; {'id': '174', 'type': 'string', 'children': [], 'value': "'.so'"}, {'id': '175', 'type': 'block', 'children': ['176']}; {'id': '176', 'type': 'continue_statement', 'children': []}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': '_stdlib'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '182', 'type': 'argument_list', 'children': ['183']}, {'id': '183', 'type': 'subscript', 'children': ['184', '191']}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '188', 'type': 'argument_list', 'children': ['189', '190']}, {'id': '189', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '190', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '191', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '192', 'type': 'return_statement', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': '_stdlib'} | def load_stdlib():
'''Scans sys.path for standard library modules.
'''
if _stdlib:
return _stdlib
prefixes = tuple({os.path.abspath(p) for p in (
sys.prefix,
getattr(sys, 'real_prefix', sys.prefix),
getattr(sys, 'base_prefix', sys.prefix),
)})
for sp in sys.path:
if not sp:
continue
_import_paths.append(os.path.abspath(sp))
stdpaths = tuple({p for p in _import_paths
if p.startswith(prefixes) and 'site-packages' not in p})
_stdlib.update(sys.builtin_module_names)
for stdpath in stdpaths:
if not os.path.isdir(stdpath):
continue
for item in os.listdir(stdpath):
if item.startswith('.') or item == 'site-packages':
continue
p = os.path.join(stdpath, item)
if not os.path.isdir(p) and not item.endswith(('.py', '.so')):
continue
_stdlib.add(item.split('.', 1)[0])
return _stdlib |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'is_python_script'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '22', '35', '78']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''Checks a file to see if it's a python script of some sort.\n '''"}; {'id': '8', 'type': 'if_statement', 'children': ['9', '19']}, {'id': '9', 'type': 'call', 'children': ['10', '17']}; {'id': '10', 'type': 'attribute', 'children': ['11', '16']}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '15', 'type': 'argument_list', 'children': []}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'endswith'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'.py'"}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'return_statement', 'children': ['21']}, {'id': '21', 'type': 'True', 'children': []}; {'id': '22', 'type': 'if_statement', 'children': ['23', '32']}, {'id': '23', 'type': 'not_operator', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'isfile'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'False', 'children': []}, {'id': '35', 'type': 'try_statement', 'children': ['36', '74']}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'with_statement', 'children': ['38', '48', '73']}; {'id': '38', 'type': 'with_clause', 'children': ['39']}, {'id': '39', 'type': 'with_item', 'children': ['40']}; {'id': '40', 'type': 'as_pattern', 'children': ['41', '46']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '45', 'type': 'string', 'children': [], 'value': "'rb'"}; {'id': '46', 'type': 'as_pattern_target', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'fp'}; {'id': '48', 'type': 'ERROR', 'children': ['49']}, {'id': '49', 'type': 'comparison_operator', 'children': ['50', '56', '59'], 'value': '!='}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'fp'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '56', 'type': 'ERROR', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'return'}; {'id': '58', 'type': 'False', 'children': []}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'string', 'children': [], 'value': "r'.*python'"}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'str_'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'fp'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'readline'}; {'id': '72', 'type': 'argument_list', 'children': []}, {'id': '73', 'type': 'block', 'children': [], 'value': ''}; {'id': '74', 'type': 'except_clause', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'IOError'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'pass_statement', 'children': []}; {'id': '78', 'type': 'return_statement', 'children': ['79']}, {'id': '79', 'type': 'False', 'children': []} | def is_python_script(filename):
'''Checks a file to see if it's a python script of some sort.
'''
if filename.lower().endswith('.py'):
return True
if not os.path.isfile(filename):
return False
try:
with open(filename, 'rb') as fp:
if fp.read(2) != b'
return False
return re.match(r'.*python', str_(fp.readline()))
except IOError:
pass
return False |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fit'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '7', 'type': 'float', 'children': [], 'value': '1e-8'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'max_iterations'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'save_results'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'show'}; {'id': '16', 'type': 'False', 'children': []}, {'id': '17', 'type': 'block', 'children': ['18', '28', '36', '41', '55', '89', '107', '112', '280']}; {'id': '18', 'type': 'import_from_statement', 'children': ['19', '24', '26']}, {'id': '19', 'type': 'dotted_name', 'children': ['20', '21', '22', '23']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'disco'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'worker'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'pipeline'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'worker'}; {'id': '24', 'type': 'dotted_name', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'Worker'}; {'id': '26', 'type': 'dotted_name', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'Stage'}; {'id': '28', 'type': 'import_from_statement', 'children': ['29', '32', '34']}, {'id': '29', 'type': 'dotted_name', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'disco'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'core'}; {'id': '32', 'type': 'dotted_name', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'Job'}; {'id': '34', 'type': 'dotted_name', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'result_iterator'}; {'id': '36', 'type': 'import_statement', 'children': ['37']}, {'id': '37', 'type': 'aliased_import', 'children': ['38', '40']}; {'id': '38', 'type': 'dotted_name', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '41', 'type': 'if_statement', 'children': ['42', '49']}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '48'], 'value': '=='}, {'id': '43', 'type': 'subscript', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '47', 'type': 'string', 'children': [], 'value': '"y_map"'}; {'id': '48', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'raise_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'string', 'children': [], 'value': '"Logistic regression requires a target label mapping parameter."'}, {'id': '55', 'type': 'try_statement', 'children': ['56', '81']}; {'id': '56', 'type': 'block', 'children': ['57', '64', '71']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'alpha'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'alpha'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'max_iterations'}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'max_iterations'}, {'id': '71', 'type': 'if_statement', 'children': ['72', '75']}; {'id': '72', 'type': 'comparison_operator', 'children': ['73', '74'], 'value': '<'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'max_iterations'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'raise_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'string', 'children': [], 'value': '"Parameter max_iterations should be greater than 0."'}, {'id': '81', 'type': 'except_clause', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'raise_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'string', 'children': [], 'value': '"Parameters should be numerical."'}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'thetas'}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'binary_operator', 'children': ['98', '106'], 'value': '+'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'subscript', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '105', 'type': 'string', 'children': [], 'value': '"X_indices"'}; {'id': '106', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '107', 'type': 'expression_statement', 'children': ['108']}; {'id': '108', 'type': 'assignment', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'J'}; {'id': '110', 'type': 'list', 'children': ['111'], 'value': '[0]'}, {'id': '111', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '112', 'type': 'for_statement', 'children': ['113', '114', '118']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '114', 'type': 'call', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'max_iterations'}; {'id': '118', 'type': 'block', 'children': ['119', '133', '173', '181', '189', '210', '221', '248']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'Job'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'worker'}, {'id': '127', 'type': 'call', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'Worker'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'save_results'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'save_results'}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '138']}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'pipeline'}; {'id': '138', 'type': 'list', 'children': ['139', '158'], 'value': '[\n ("split", Stage("map", input_chain=dataset.params["input_chain"], init=simple_init, process=map_fit)),\n (\'group_all\', Stage("reduce", init=simple_init, process=reduce_fit, combine=True))]'}, {'id': '139', 'type': 'tuple', 'children': ['140', '141']}; {'id': '140', 'type': 'string', 'children': [], 'value': '"split"'}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'Stage'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145', '152', '155']}; {'id': '144', 'type': 'string', 'children': [], 'value': '"map"'}, {'id': '145', 'type': 'keyword_argument', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'input_chain'}, {'id': '147', 'type': 'subscript', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '151', 'type': 'string', 'children': [], 'value': '"input_chain"'}; {'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'init'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'simple_init'}, {'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'process'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'map_fit'}; {'id': '158', 'type': 'tuple', 'children': ['159', '160']}, {'id': '159', 'type': 'string', 'children': [], 'value': "'group_all'"}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'Stage'}; {'id': '162', 'type': 'argument_list', 'children': ['163', '164', '167', '170']}, {'id': '163', 'type': 'string', 'children': [], 'value': '"reduce"'}; {'id': '164', 'type': 'keyword_argument', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'init'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'simple_init'}, {'id': '167', 'type': 'keyword_argument', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'process'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'reduce_fit'}; {'id': '170', 'type': 'keyword_argument', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'combine'}; {'id': '172', 'type': 'True', 'children': []}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'assignment', 'children': ['183', '188']}, {'id': '183', 'type': 'subscript', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '187', 'type': 'string', 'children': [], 'value': '"thetas"'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'thetas'}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'run'}; {'id': '194', 'type': 'argument_list', 'children': ['195', '203']}, {'id': '195', 'type': 'keyword_argument', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '197', 'type': 'binary_operator', 'children': ['198', '199'], 'value': '%'}; {'id': '198', 'type': 'string', 'children': [], 'value': '"logreg_fit_iter_%d"'}, {'id': '199', 'type': 'parenthesized_expression', 'children': ['200']}; {'id': '200', 'type': 'binary_operator', 'children': ['201', '202'], 'value': '+'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '202', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'input'}, {'id': '205', 'type': 'subscript', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '209', 'type': 'string', 'children': [], 'value': '"data_tag"'}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'fitmodel_url'}, {'id': '213', 'type': 'call', 'children': ['214', '217']}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'wait'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'keyword_argument', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'show'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'show'}, {'id': '221', 'type': 'for_statement', 'children': ['222', '225', '229']}; {'id': '222', 'type': 'pattern_list', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '225', 'type': 'call', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'result_iterator'}, {'id': '227', 'type': 'argument_list', 'children': ['228']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'fitmodel_url'}, {'id': '229', 'type': 'block', 'children': ['230']}; {'id': '230', 'type': 'if_statement', 'children': ['231', '234', '242']}, {'id': '231', 'type': 'comparison_operator', 'children': ['232', '233'], 'value': '=='}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '233', 'type': 'string', 'children': [], 'value': '"J"'}; {'id': '234', 'type': 'block', 'children': ['235']}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'call', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'J'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '240', 'type': 'argument_list', 'children': ['241']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '242', 'type': 'else_clause', 'children': ['243']}, {'id': '243', 'type': 'block', 'children': ['244']}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'assignment', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'thetas'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '248', 'type': 'if_statement', 'children': ['249', '265']}, {'id': '249', 'type': 'comparison_operator', 'children': ['250', '264'], 'value': '<'}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'abs'}; {'id': '254', 'type': 'argument_list', 'children': ['255']}, {'id': '255', 'type': 'binary_operator', 'children': ['256', '260'], 'value': '-'}; {'id': '256', 'type': 'subscript', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'J'}; {'id': '258', 'type': 'unary_operator', 'children': ['259'], 'value': '-'}, {'id': '259', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '260', 'type': 'subscript', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'J'}; {'id': '262', 'type': 'unary_operator', 'children': ['263'], 'value': '-'}, {'id': '263', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'alpha'}, {'id': '265', 'type': 'block', 'children': ['266', '279']}; {'id': '266', 'type': 'if_statement', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'show'}; {'id': '268', 'type': 'block', 'children': ['269']}, {'id': '269', 'type': 'expression_statement', 'children': ['270']}; {'id': '270', 'type': 'call', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '272', 'type': 'argument_list', 'children': ['273']}, {'id': '273', 'type': 'binary_operator', 'children': ['274', '275'], 'value': '%'}; {'id': '274', 'type': 'string', 'children': [], 'value': '"Converged at iteration %d"'}, {'id': '275', 'type': 'parenthesized_expression', 'children': ['276']}; {'id': '276', 'type': 'binary_operator', 'children': ['277', '278'], 'value': '+'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '278', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '279', 'type': 'break_statement', 'children': []}; {'id': '280', 'type': 'return_statement', 'children': ['281']}, {'id': '281', 'type': 'dictionary', 'children': ['282']}; {'id': '282', 'type': 'pair', 'children': ['283', '284']}, {'id': '283', 'type': 'string', 'children': [], 'value': '"logreg_fitmodel"'} | def fit(dataset, alpha=1e-8, max_iterations=10, save_results=True, show=False):
from disco.worker.pipeline.worker import Worker, Stage
from disco.core import Job, result_iterator
import numpy as np
if dataset.params["y_map"] == []:
raise Exception("Logistic regression requires a target label mapping parameter.")
try:
alpha = float(alpha)
max_iterations = int(max_iterations)
if max_iterations < 1:
raise Exception("Parameter max_iterations should be greater than 0.")
except ValueError:
raise Exception("Parameters should be numerical.")
thetas = np.zeros(len(dataset.params["X_indices"]) + 1)
J = [0]
for i in range(max_iterations):
job = Job(worker=Worker(save_results=save_results))
job.pipeline = [
("split", Stage("map", input_chain=dataset.params["input_chain"], init=simple_init, process=map_fit)),
('group_all', Stage("reduce", init=simple_init, process=reduce_fit, combine=True))]
job.params = dataset.params
job.params["thetas"] = thetas
job.run(name="logreg_fit_iter_%d" % (i + 1), input=dataset.params["data_tag"])
fitmodel_url = job.wait(show=show)
for k, v in result_iterator(fitmodel_url):
if k == "J":
J.append(v)
else:
thetas = v
if np.abs(J[-2] - J[-1]) < alpha:
if show:
print("Converged at iteration %d" % (i + 1))
break
return {"logreg_fitmodel": fitmodel_url} |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'draw_image'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'ymin'}, {'id': '11', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'ymax'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '34', '49', '73', '93', '113', '133', '153', '161']}, {'id': '19', 'type': 'if_statement', 'children': ['20', '23']}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'is'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'xmax'}, {'id': '27', 'type': 'binary_operator', 'children': ['28', '29'], 'value': '+'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'xmin'}, {'id': '29', 'type': 'subscript', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'image'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'size'}, {'id': '33', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '34', 'type': 'if_statement', 'children': ['35', '38']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'is'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'ymax'}, {'id': '37', 'type': 'None', 'children': []}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ymax'}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '44'], 'value': '+'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ymin'}; {'id': '44', 'type': 'subscript', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'image'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '56']}, {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'bitmap_list'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'dictionary', 'children': ['58', '61', '64', '67', '70']}; {'id': '58', 'type': 'pair', 'children': ['59', '60']}, {'id': '59', 'type': 'string', 'children': [], 'value': "'image'"}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'image'}, {'id': '61', 'type': 'pair', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'xmin'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '64', 'type': 'pair', 'children': ['65', '66']}, {'id': '65', 'type': 'string', 'children': [], 'value': "'xmax'"}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'xmax'}, {'id': '67', 'type': 'pair', 'children': ['68', '69']}; {'id': '68', 'type': 'string', 'children': [], 'value': "'ymin'"}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'ymin'}; {'id': '70', 'type': 'pair', 'children': ['71', '72']}, {'id': '71', 'type': 'string', 'children': [], 'value': "'ymax'"}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'ymax'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '78', 'type': 'generator_expression', 'children': ['79', '80', '89']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '80', 'type': 'for_in_clause', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '82', 'type': 'tuple', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '84', 'type': 'subscript', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'limits'}; {'id': '88', 'type': 'string', 'children': [], 'value': "'xmin'"}, {'id': '89', 'type': 'if_clause', 'children': ['90']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': 'is'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '92', 'type': 'None', 'children': []}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'ymin'}; {'id': '96', 'type': 'call', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '98', 'type': 'generator_expression', 'children': ['99', '100', '109']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '100', 'type': 'for_in_clause', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '102', 'type': 'tuple', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'ymin'}; {'id': '104', 'type': 'subscript', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'limits'}; {'id': '108', 'type': 'string', 'children': [], 'value': "'ymin'"}, {'id': '109', 'type': 'if_clause', 'children': ['110']}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': 'is'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '112', 'type': 'None', 'children': []}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '118', 'type': 'generator_expression', 'children': ['119', '120', '129']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '120', 'type': 'for_in_clause', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '122', 'type': 'tuple', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '124', 'type': 'subscript', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'limits'}; {'id': '128', 'type': 'string', 'children': [], 'value': "'xmax'"}, {'id': '129', 'type': 'if_clause', 'children': ['130']}; {'id': '130', 'type': 'comparison_operator', 'children': ['131', '132'], 'value': 'is'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '132', 'type': 'None', 'children': []}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'ymax'}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '138', 'type': 'generator_expression', 'children': ['139', '140', '149']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '140', 'type': 'for_in_clause', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '142', 'type': 'tuple', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'ymax'}; {'id': '144', 'type': 'subscript', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'limits'}; {'id': '148', 'type': 'string', 'children': [], 'value': "'ymax'"}, {'id': '149', 'type': 'if_clause', 'children': ['150']}; {'id': '150', 'type': 'comparison_operator', 'children': ['151', '152'], 'value': 'is'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '152', 'type': 'None', 'children': []}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'set_xlimits'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'xmax'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'set_ylimits'}; {'id': '166', 'type': 'argument_list', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'ymin'} | def draw_image(self, image, xmin=0, ymin=0, xmax=None, ymax=None):
if xmax is None:
xmax = xmin + image.size[0]
if ymax is None:
ymax = ymin + image.size[1]
self.bitmap_list.append({'image': image,
'xmin': xmin,
'xmax': xmax,
'ymin': ymin,
'ymax': ymax})
xmin = min(x for x in (xmin, self.limits['xmin'])
if x is not None)
ymin = min(y for y in (ymin, self.limits['ymin'])
if y is not None)
xmax = max(x for x in (xmax, self.limits['xmax'])
if x is not None)
ymax = max(y for y in (ymax, self.limits['ymax'])
if y is not None)
self.set_xlimits(xmin, xmax)
self.set_ylimits(ymin, ymax) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_prepare_data'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '22', '28', '151', '157']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'pattern_list', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'xmax'}, {'id': '11', 'type': 'expression_list', 'children': ['12', '17']}; {'id': '12', 'type': 'subscript', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'limits'}; {'id': '16', 'type': 'string', 'children': [], 'value': "'xmin'"}, {'id': '17', 'type': 'subscript', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'limits'}, {'id': '21', 'type': 'string', 'children': [], 'value': "'xmax'"}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'prepared_plot_series_list'}, {'id': '27', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '28', 'type': 'for_statement', 'children': ['29', '30', '33']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'series'}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'plot_series_list'}, {'id': '33', 'type': 'block', 'children': ['34', '42', '48', '60', '142']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'series'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'copy'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}, {'id': '47', 'type': 'string', 'children': [], 'value': "'data'"}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '55']}; {'id': '50', 'type': 'pattern_list', 'children': ['51', '52', '53', '54']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'list_splat', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '60', 'type': 'if_statement', 'children': ['61', '70']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '66'], 'value': '=='}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '70', 'type': 'block', 'children': ['71', '80', '109', '131']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '80', 'type': 'if_statement', 'children': ['81', '84', '103']}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': 'is'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'xmin'}, {'id': '83', 'type': 'None', 'children': []}; {'id': '84', 'type': 'block', 'children': ['85', '94']}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'searchsorted'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '94', 'type': 'if_statement', 'children': ['95', '98']}, {'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': '>'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'min_idx'}, {'id': '97', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'expression_statement', 'children': ['100']}; {'id': '100', 'type': 'augmented_assignment', 'children': ['101', '102'], 'value': '-='}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '103', 'type': 'else_clause', 'children': ['104']}; {'id': '104', 'type': 'block', 'children': ['105']}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '108', 'type': 'None', 'children': []}, {'id': '109', 'type': 'if_statement', 'children': ['110', '113', '125']}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': 'is'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '112', 'type': 'None', 'children': []}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'max_idx'}, {'id': '117', 'type': 'binary_operator', 'children': ['118', '124'], 'value': '+'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'searchsorted'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '124', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '125', 'type': 'else_clause', 'children': ['126']}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'max_idx'}; {'id': '130', 'type': 'None', 'children': []}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '136']}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}, {'id': '135', 'type': 'string', 'children': [], 'value': "'data'"}; {'id': '136', 'type': 'subscript', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '138', 'type': 'slice', 'children': ['139', '140', '141']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '140', 'type': 'colon', 'children': []}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'max_idx'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '149']}; {'id': '144', 'type': 'attribute', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'prepared_plot_series_list'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'assignment', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'prepared_shaded_regions_list'}; {'id': '156', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '157', 'type': 'for_statement', 'children': ['158', '159', '162']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'series'}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'shaded_regions_list'}; {'id': '162', 'type': 'block', 'children': ['163', '171', '177', '188', '270']}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'series'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '170', 'type': 'argument_list', 'children': []}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '174', 'type': 'subscript', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}; {'id': '176', 'type': 'string', 'children': [], 'value': "'data'"}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '183']}, {'id': '179', 'type': 'pattern_list', 'children': ['180', '181', '182']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'list_splat', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '188', 'type': 'if_statement', 'children': ['189', '198']}, {'id': '189', 'type': 'comparison_operator', 'children': ['190', '194'], 'value': '=='}; {'id': '190', 'type': 'call', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '194', 'type': 'call', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '198', 'type': 'block', 'children': ['199', '208', '237', '259']}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'assignment', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '202', 'type': 'call', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '206', 'type': 'argument_list', 'children': ['207']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '208', 'type': 'if_statement', 'children': ['209', '212', '231']}, {'id': '209', 'type': 'comparison_operator', 'children': ['210', '211'], 'value': 'is'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'xmin'}, {'id': '211', 'type': 'None', 'children': []}; {'id': '212', 'type': 'block', 'children': ['213', '222']}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'assignment', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'searchsorted'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'xmin'}; {'id': '222', 'type': 'if_statement', 'children': ['223', '226']}, {'id': '223', 'type': 'comparison_operator', 'children': ['224', '225'], 'value': '>'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'min_idx'}, {'id': '225', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '226', 'type': 'block', 'children': ['227']}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'augmented_assignment', 'children': ['229', '230'], 'value': '-='}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '230', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '231', 'type': 'else_clause', 'children': ['232']}; {'id': '232', 'type': 'block', 'children': ['233']}, {'id': '233', 'type': 'expression_statement', 'children': ['234']}; {'id': '234', 'type': 'assignment', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '236', 'type': 'None', 'children': []}, {'id': '237', 'type': 'if_statement', 'children': ['238', '241', '253']}; {'id': '238', 'type': 'comparison_operator', 'children': ['239', '240'], 'value': 'is'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '240', 'type': 'None', 'children': []}, {'id': '241', 'type': 'block', 'children': ['242']}; {'id': '242', 'type': 'expression_statement', 'children': ['243']}, {'id': '243', 'type': 'assignment', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'max_idx'}, {'id': '245', 'type': 'binary_operator', 'children': ['246', '252'], 'value': '+'}; {'id': '246', 'type': 'call', 'children': ['247', '250']}, {'id': '247', 'type': 'attribute', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'searchsorted'}; {'id': '250', 'type': 'argument_list', 'children': ['251']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'xmax'}; {'id': '252', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '253', 'type': 'else_clause', 'children': ['254']}; {'id': '254', 'type': 'block', 'children': ['255']}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'assignment', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'max_idx'}; {'id': '258', 'type': 'None', 'children': []}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'assignment', 'children': ['261', '264']}, {'id': '261', 'type': 'subscript', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'prepared_series'}, {'id': '263', 'type': 'string', 'children': [], 'value': "'data'"}; {'id': '264', 'type': 'subscript', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '266', 'type': 'slice', 'children': ['267', '268', '269']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'min_idx'}; {'id': '268', 'type': 'colon', 'children': []}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'max_idx'}; {'id': '270', 'type': 'expression_statement', 'children': ['271']}, {'id': '271', 'type': 'call', 'children': ['272', '277']}; {'id': '272', 'type': 'attribute', 'children': ['273', '276']}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'prepared_shaded_regions_list'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '277', 'type': 'argument_list', 'children': ['278']} | def _prepare_data(self):
xmin, xmax = self.limits['xmin'], self.limits['xmax']
self.prepared_plot_series_list = []
for series in self.plot_series_list:
prepared_series = series.copy()
data = prepared_series['data']
x, _, _, _ = zip(*data)
if sorted(x) == list(x):
x = np.array(x)
if xmin is not None:
min_idx = x.searchsorted(xmin)
if min_idx > 0:
min_idx -= 1
else:
min_idx = None
if xmax is not None:
max_idx = x.searchsorted(xmax) + 1
else:
max_idx = None
prepared_series['data'] = data[min_idx:max_idx]
self.prepared_plot_series_list.append(prepared_series)
self.prepared_shaded_regions_list = []
for series in self.shaded_regions_list:
prepared_series = series.copy()
data = prepared_series['data']
x, _, _ = zip(*data)
if sorted(x) == list(x):
x = np.array(x)
if xmin is not None:
min_idx = x.searchsorted(xmin)
if min_idx > 0:
min_idx -= 1
else:
min_idx = None
if xmax is not None:
max_idx = x.searchsorted(xmax) + 1
else:
max_idx = None
prepared_series['data'] = data[min_idx:max_idx]
self.prepared_shaded_regions_list.append(prepared_series) |
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{'id': '14', 'type': 'identifier', 'children': [], 'value': 'stop_id'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'stop_id'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'route'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'destination'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'destination'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'api_key'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'api_key'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '37', 'type': 'binary_operator', 'children': ['38', '47', '48'], 'value': '+'}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '43', '44'], 'value': '+'}, {'id': '39', 'type': 'concatenated_string', 'children': ['40', '41', '42']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'https://api.transport.nsw.gov.au/v1/tp/departure_mon?'"}, {'id': '41', 'type': 'string', 'children': [], 'value': "'outputFormat=rapidJSON&coordOutputFormat=EPSG%3A4326&'"}; {'id': '42', 'type': 'string', 'children': [], 'value': "'mode=direct&type_dm=stop&name_dm='"}, {'id': '43', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'stop_id'}, {'id': '47', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'&departureMonitorMacro=true&TfNSWDM=true&version=10.2.1.42'"}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'auth'}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '54'], 'value': '+'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'apikey '"}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'api_key'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '60', 'type': 'dictionary', 'children': ['61', '64']}, {'id': '61', 'type': 'pair', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'Accept'"}, {'id': '63', 'type': 'string', 'children': [], 'value': "'application/json'"}; {'id': '64', 'type': 'pair', 'children': ['65', '66']}, {'id': '65', 'type': 'string', 'children': [], 'value': "'Authorization'"}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'auth'}, {'id': '67', 'type': 'try_statement', 'children': ['68', '84']}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'requests'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '78', '81']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '78', 'type': 'keyword_argument', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '83', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '84', 'type': 'except_clause', 'children': ['85']}, {'id': '85', 'type': 'block', 'children': ['86', '93']}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'string', 'children': [], 'value': '"Network or Timeout error"'}, {'id': '93', 'type': 'return_statement', 'children': ['94']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '97', 'type': 'if_statement', 'children': ['98', '103']}; {'id': '98', 'type': 'comparison_operator', 'children': ['99', '102'], 'value': '!='}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'status_code'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '200'}, {'id': '103', 'type': 'block', 'children': ['104', '111']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'string', 'children': [], 'value': '"Error with the request sent; check api key"'}, {'id': '111', 'type': 'return_statement', 'children': ['112']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '118', 'type': 'call', 'children': ['119', '122']}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '122', 'type': 'argument_list', 'children': []}, {'id': '123', 'type': 'try_statement', 'children': ['124', '129']}; {'id': '124', 'type': 'block', 'children': ['125']}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'subscript', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '128', 'type': 'string', 'children': [], 'value': "'stopEvents'"}, {'id': '129', 'type': 'except_clause', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'KeyError'}, {'id': '131', 'type': 'block', 'children': ['132', '139']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'string', 'children': [], 'value': '"No stop events for this query"'}, {'id': '139', 'type': 'return_statement', 'children': ['140']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'maxresults'}; {'id': '146', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '150', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '151', 'type': 'if_statement', 'children': ['152', '157', '222', '291']}; {'id': '152', 'type': 'comparison_operator', 'children': ['153', '156'], 'value': '!='}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'destination'}; {'id': '156', 'type': 'string', 'children': [], 'value': "''"}, {'id': '157', 'type': 'block', 'children': ['158']}; {'id': '158', 'type': 'for_statement', 'children': ['159', '160', '169']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'call', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'subscript', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '168', 'type': 'string', 'children': [], 'value': "'stopEvents'"}, {'id': '169', 'type': 'block', 'children': ['170', '184']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'assignment', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'destination'}, {'id': '173', 'type': 'subscript', 'children': ['174', '183']}; {'id': '174', 'type': 'subscript', 'children': ['175', '182']}, {'id': '175', 'type': 'subscript', 'children': ['176', '181']}; {'id': '176', 'type': 'subscript', 'children': ['177', '180']}, {'id': '177', 'type': 'subscript', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '179', 'type': 'string', 'children': [], 'value': "'stopEvents'"}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '181', 'type': 'string', 'children': [], 'value': "'transportation'"}; {'id': '182', 'type': 'string', 'children': [], 'value': "'destination'"}, {'id': '183', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '184', 'type': 'if_statement', 'children': ['185', '190']}, {'id': '185', 'type': 'comparison_operator', 'children': ['186', '187'], 'value': '=='}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'destination'}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'destination'}; {'id': '190', 'type': 'block', 'children': ['191', '201', '213']}, {'id': '191', 'type': 'expression_statement', 'children': ['192']}; {'id': '192', 'type': 'assignment', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '194', 'type': 'call', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'parseEvent'}; {'id': '198', 'type': 'argument_list', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '201', 'type': 'if_statement', 'children': ['202', '205']}; {'id': '202', 'type': 'comparison_operator', 'children': ['203', '204'], 'value': '!='}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '204', 'type': 'None', 'children': []}, {'id': '205', 'type': 'block', 'children': ['206']}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'call', 'children': ['208', '211']}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '211', 'type': 'argument_list', 'children': ['212']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '213', 'type': 'if_statement', 'children': ['214', '220']}; {'id': '214', 'type': 'comparison_operator', 'children': ['215', '219'], 'value': '>='}, {'id': '215', 'type': 'call', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'monitor'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'maxresults'}; {'id': '220', 'type': 'block', 'children': ['221']}, {'id': '221', 'type': 'break_statement', 'children': []}; {'id': '222', 'type': 'elif_clause', 'children': ['223', '228']}, {'id': '223', 'type': 'comparison_operator', 'children': ['224', '227'], 'value': '!='}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '227', 'type': 'string', 'children': [], 'value': "''"}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'for_statement', 'children': ['230', '231', '240']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '231', 'type': 'call', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '233', 'type': 'argument_list', 'children': ['234']}; {'id': '234', 'type': 'call', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '236', 'type': 'argument_list', 'children': ['237']}, {'id': '237', 'type': 'subscript', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '239', 'type': 'string', 'children': [], 'value': "'stopEvents'"}; {'id': '240', 'type': 'block', 'children': ['241', '253']}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'assignment', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '244', 'type': 'subscript', 'children': ['245', '252']}, {'id': '245', 'type': 'subscript', 'children': ['246', '251']}; {'id': '246', 'type': 'subscript', 'children': ['247', '250']}, {'id': '247', 'type': 'subscript', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '249', 'type': 'string', 'children': [], 'value': "'stopEvents'"}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '251', 'type': 'string', 'children': [], 'value': "'transportation'"}; {'id': '252', 'type': 'string', 'children': [], 'value': "'number'"}, {'id': '253', 'type': 'if_statement', 'children': ['254', '259']}; {'id': '254', 'type': 'comparison_operator', 'children': ['255', '256'], 'value': '=='}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'route'}, {'id': '259', 'type': 'block', 'children': ['260', '270', '282']}; {'id': '260', 'type': 'expression_statement', 'children': ['261']}, {'id': '261', 'type': 'assignment', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '263', 'type': 'call', 'children': ['264', '267']}; {'id': '264', 'type': 'attribute', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'parseEvent'}, {'id': '267', 'type': 'argument_list', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '270', 'type': 'if_statement', 'children': ['271', '274']}, {'id': '271', 'type': 'comparison_operator', 'children': ['272', '273'], 'value': '!='}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '273', 'type': 'None', 'children': []}; {'id': '274', 'type': 'block', 'children': ['275']}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'call', 'children': ['277', '280']}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'monitor'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '280', 'type': 'argument_list', 'children': ['281']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '282', 'type': 'if_statement', 'children': ['283', '289']}, {'id': '283', 'type': 'comparison_operator', 'children': ['284', '288'], 'value': '>='}; {'id': '284', 'type': 'call', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '286', 'type': 'argument_list', 'children': ['287']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'maxresults'}, {'id': '289', 'type': 'block', 'children': ['290']}; {'id': '290', 'type': 'break_statement', 'children': []}, {'id': '291', 'type': 'else_clause', 'children': ['292']}; {'id': '292', 'type': 'block', 'children': ['293']}, {'id': '293', 'type': 'for_statement', 'children': ['294', '295', '300']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '295', 'type': 'call', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '297', 'type': 'argument_list', 'children': ['298', '299']}; {'id': '298', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'maxresults'}; {'id': '300', 'type': 'block', 'children': ['301', '311']}, {'id': '301', 'type': 'expression_statement', 'children': ['302']}; {'id': '302', 'type': 'assignment', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '304', 'type': 'call', 'children': ['305', '308']}, {'id': '305', 'type': 'attribute', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'parseEvent'}; {'id': '308', 'type': 'argument_list', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '311', 'type': 'if_statement', 'children': ['312', '315']}; {'id': '312', 'type': 'comparison_operator', 'children': ['313', '314'], 'value': '!='}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '314', 'type': 'None', 'children': []}, {'id': '315', 'type': 'block', 'children': ['316']}; {'id': '316', 'type': 'expression_statement', 'children': ['317']}, {'id': '317', 'type': 'call', 'children': ['318', '321']}; {'id': '318', 'type': 'attribute', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '321', 'type': 'argument_list', 'children': ['322']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '323', 'type': 'if_statement', 'children': ['324', '325']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'monitor'}, {'id': '325', 'type': 'block', 'children': ['326']}; {'id': '326', 'type': 'expression_statement', 'children': ['327']}, {'id': '327', 'type': 'assignment', 'children': ['328', '331']}; {'id': '328', 'type': 'attribute', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '331', 'type': 'dictionary', 'children': ['332', '337', '344', '351', '358', '365', '372']}; {'id': '332', 'type': 'pair', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'ATTR_STOP_ID'}; {'id': '334', 'type': 'attribute', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'stop_id'}, {'id': '337', 'type': 'pair', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'ATTR_ROUTE'}, {'id': '339', 'type': 'subscript', 'children': ['340', '343']}; {'id': '340', 'type': 'subscript', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '342', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '343', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '344', 'type': 'pair', 'children': ['345', '346']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'ATTR_DUE_IN'}; {'id': '346', 'type': 'subscript', 'children': ['347', '350']}, {'id': '347', 'type': 'subscript', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'monitor'}, {'id': '349', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '350', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '351', 'type': 'pair', 'children': ['352', '353']}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'ATTR_DELAY'}, {'id': '353', 'type': 'subscript', 'children': ['354', '357']}; {'id': '354', 'type': 'subscript', 'children': ['355', '356']}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '356', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '357', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '358', 'type': 'pair', 'children': ['359', '360']}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'ATTR_REALTIME'}; {'id': '360', 'type': 'subscript', 'children': ['361', '364']}, {'id': '361', 'type': 'subscript', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'monitor'}, {'id': '363', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '364', 'type': 'integer', 'children': [], 'value': '5'}, {'id': '365', 'type': 'pair', 'children': ['366', '367']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'ATTR_DESTINATION'}, {'id': '367', 'type': 'subscript', 'children': ['368', '371']}; {'id': '368', 'type': 'subscript', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'monitor'}; {'id': '370', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '371', 'type': 'integer', 'children': [], 'value': '6'}; {'id': '372', 'type': 'pair', 'children': ['373', '374']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'ATTR_MODE'}; {'id': '374', 'type': 'subscript', 'children': ['375', '378']}, {'id': '375', 'type': 'subscript', 'children': ['376', '377']}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'monitor'}, {'id': '377', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '378', 'type': 'integer', 'children': [], 'value': '7'}, {'id': '379', 'type': 'return_statement', 'children': ['380']}; {'id': '380', 'type': 'attribute', 'children': ['381', '382']}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'self'} | def get_departures(self, stop_id, route, destination, api_key):
self.stop_id = stop_id
self.route = route
self.destination = destination
self.api_key = api_key
url = \
'https://api.transport.nsw.gov.au/v1/tp/departure_mon?' \
'outputFormat=rapidJSON&coordOutputFormat=EPSG%3A4326&' \
'mode=direct&type_dm=stop&name_dm=' \
+ self.stop_id \
+ '&departureMonitorMacro=true&TfNSWDM=true&version=10.2.1.42'
auth = 'apikey ' + self.api_key
header = {'Accept': 'application/json', 'Authorization': auth}
try:
response = requests.get(url, headers=header, timeout=10)
except:
logger.warning("Network or Timeout error")
return self.info
if response.status_code != 200:
logger.warning("Error with the request sent; check api key")
return self.info
result = response.json()
try:
result['stopEvents']
except KeyError:
logger.warning("No stop events for this query")
return self.info
maxresults = 1
monitor = []
if self.destination != '':
for i in range(len(result['stopEvents'])):
destination = result['stopEvents'][i]['transportation']['destination']['name']
if destination == self.destination:
event = self.parseEvent(result, i)
if event != None:
monitor.append(event)
if len(monitor) >= maxresults:
break
elif self.route != '':
for i in range(len(result['stopEvents'])):
number = result['stopEvents'][i]['transportation']['number']
if number == self.route:
event = self.parseEvent(result, i)
if event != None:
monitor.append(event)
if len(monitor) >= maxresults:
break
else:
for i in range(0, maxresults):
event = self.parseEvent(result, i)
if event != None:
monitor.append(event)
if monitor:
self.info = {
ATTR_STOP_ID: self.stop_id,
ATTR_ROUTE: monitor[0][0],
ATTR_DUE_IN: monitor[0][1],
ATTR_DELAY: monitor[0][2],
ATTR_REALTIME: monitor[0][5],
ATTR_DESTINATION: monitor[0][6],
ATTR_MODE: monitor[0][7]
}
return self.info |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pw'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'user_pattern'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'strict_flag'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'user_flag'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'edit_subcommand'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'gen_subcommand'}, {'id': '13', 'type': 'block', 'children': ['14', '33', '43', '73', '103', '112', '128', '138', '145', '172', '198']}; {'id': '14', 'type': 'function_definition', 'children': ['15', '16', '19']}, {'id': '15', 'type': 'function_name', 'children': [], 'value': 'handle_sigint'}; {'id': '16', 'type': 'parameters', 'children': ['17']}, {'id': '17', 'type': 'list_splat_pattern', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '19', 'type': 'block', 'children': ['20', '26']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'signal'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'signal'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'signal'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'SIGINT'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'handle_sigint'}, {'id': '43', 'type': 'if_statement', 'children': ['44', '45', '63']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'gen_subcommand'}, {'id': '45', 'type': 'block', 'children': ['46', '56', '62']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '49', 'type': 'conditional_expression', 'children': ['50', '54', '55'], 'value': 'if'}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}, {'id': '55', 'type': 'None', 'children': []}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'generate_password'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'mode'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '62', 'type': 'return_statement', 'children': []}, {'id': '63', 'type': 'elif_clause', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'edit_subcommand'}, {'id': '65', 'type': 'block', 'children': ['66', '72']}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'launch_editor'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '72', 'type': 'return_statement', 'children': []}, {'id': '73', 'type': 'if_statement', 'children': ['74', '83']}; {'id': '74', 'type': 'not_operator', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '81']}; {'id': '76', 'type': 'attribute', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '83', 'type': 'block', 'children': ['84', '96']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '89', 'type': 'argument_list', 'children': ['90', '93']}; {'id': '90', 'type': 'binary_operator', 'children': ['91', '92'], 'value': '%'}, {'id': '91', 'type': 'string', 'children': [], 'value': '"error: password store not found at \'%s\'"'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '95', 'type': 'True', 'children': []}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'store'}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'Store'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'load'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '112', 'type': 'if_statement', 'children': ['113', '115']}, {'id': '113', 'type': 'not_operator', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'user_pattern'}, {'id': '115', 'type': 'block', 'children': ['116']}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '122']}; {'id': '118', 'type': 'pattern_list', 'children': ['119', '120', '121']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'user_pattern'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}; {'id': '122', 'type': 'call', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'rpartition'}; {'id': '126', 'type': 'argument_list', 'children': ['127']}, {'id': '127', 'type': 'string', 'children': [], 'value': '"@"'}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}, {'id': '129', 'type': 'assignment', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'store'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '135', 'type': 'argument_list', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'user_pattern'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'assignment', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '145', 'type': 'if_statement', 'children': ['146', '154']}; {'id': '146', 'type': 'boolean_operator', 'children': ['147', '148'], 'value': 'and'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'strict_flag'}; {'id': '148', 'type': 'comparison_operator', 'children': ['149', '153'], 'value': '!='}, {'id': '149', 'type': 'call', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '154', 'type': 'block', 'children': ['155', '165']}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '160', 'type': 'argument_list', 'children': ['161', '162']}, {'id': '161', 'type': 'string', 'children': [], 'value': '"error: multiple or no records found (but using --strict flag)"'}; {'id': '162', 'type': 'keyword_argument', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '164', 'type': 'True', 'children': []}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '172', 'type': 'if_statement', 'children': ['173', '178']}, {'id': '173', 'type': 'comparison_operator', 'children': ['174', '175'], 'value': '=='}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'mode'}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'Mode'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'RAW'}; {'id': '178', 'type': 'block', 'children': ['179', '197']}, {'id': '179', 'type': 'for_statement', 'children': ['180', '181', '182']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '182', 'type': 'block', 'children': ['183']}, {'id': '183', 'type': 'expression_statement', 'children': ['184']}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'conditional_expression', 'children': ['190', '193', '194'], 'value': 'if'}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'user_flag'}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'password'}, {'id': '197', 'type': 'return_statement', 'children': []}; {'id': '198', 'type': 'for_statement', 'children': ['199', '202', '206']}, {'id': '199', 'type': 'pattern_list', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '206', 'type': 'block', 'children': ['207', '217', '234', '314', '380']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '210', 'type': 'call', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'highlight_match'}; {'id': '212', 'type': 'argument_list', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'key_pattern'}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '217', 'type': 'if_statement', 'children': ['218', '221']}; {'id': '218', 'type': 'attribute', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'augmented_assignment', 'children': ['224', '225'], 'value': '+='}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '+'}; {'id': '226', 'type': 'string', 'children': [], 'value': '": "'}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'highlight_match'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'user_pattern'}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '234', 'type': 'if_statement', 'children': ['235', '243', '255']}, {'id': '235', 'type': 'boolean_operator', 'children': ['236', '241'], 'value': 'and'}; {'id': '236', 'type': 'comparison_operator', 'children': ['237', '238'], 'value': '=='}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'mode'}; {'id': '238', 'type': 'attribute', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'Mode'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'ECHO'}, {'id': '241', 'type': 'not_operator', 'children': ['242']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'user_flag'}, {'id': '243', 'type': 'block', 'children': ['244']}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'augmented_assignment', 'children': ['246', '247'], 'value': '+='}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '247', 'type': 'binary_operator', 'children': ['248', '249'], 'value': '+'}; {'id': '248', 'type': 'string', 'children': [], 'value': '" | "'}, {'id': '249', 'type': 'call', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'style_password'}, {'id': '251', 'type': 'argument_list', 'children': ['252']}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'password'}, {'id': '255', 'type': 'elif_clause', 'children': ['256', '265']}; {'id': '256', 'type': 'boolean_operator', 'children': ['257', '262'], 'value': 'and'}, {'id': '257', 'type': 'comparison_operator', 'children': ['258', '259'], 'value': '=='}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'mode'}, {'id': '259', 'type': 'attribute', 'children': ['260', '261']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'Mode'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'COPY'}; {'id': '262', 'type': 'comparison_operator', 'children': ['263', '264'], 'value': '=='}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '264', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '265', 'type': 'block', 'children': ['266', '308']}; {'id': '266', 'type': 'try_statement', 'children': ['267', '298']}, {'id': '267', 'type': 'block', 'children': ['268', '271', '285']}; {'id': '268', 'type': 'import_statement', 'children': ['269']}, {'id': '269', 'type': 'dotted_name', 'children': ['270']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'pyperclip'}, {'id': '271', 'type': 'expression_statement', 'children': ['272']}; {'id': '272', 'type': 'call', 'children': ['273', '276']}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'pyperclip'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '276', 'type': 'argument_list', 'children': ['277']}, {'id': '277', 'type': 'conditional_expression', 'children': ['278', '281', '282'], 'value': 'if'}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'user_flag'}; {'id': '282', 'type': 'attribute', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'password'}, {'id': '285', 'type': 'expression_statement', 'children': ['286']}; {'id': '286', 'type': 'assignment', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'style_success'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'binary_operator', 'children': ['292', '293'], 'value': '%'}; {'id': '292', 'type': 'string', 'children': [], 'value': '"*** %s COPIED TO CLIPBOARD ***"'}, {'id': '293', 'type': 'parenthesized_expression', 'children': ['294']}; {'id': '294', 'type': 'conditional_expression', 'children': ['295', '296', '297'], 'value': 'if'}, {'id': '295', 'type': 'string', 'children': [], 'value': '"USERNAME"'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'user_flag'}, {'id': '297', 'type': 'string', 'children': [], 'value': '"PASSWORD"'}; {'id': '298', 'type': 'except_clause', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'ImportError'}; {'id': '300', 'type': 'block', 'children': ['301']}, {'id': '301', 'type': 'expression_statement', 'children': ['302']}; {'id': '302', 'type': 'assignment', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '304', 'type': 'call', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'style_error'}; {'id': '306', 'type': 'argument_list', 'children': ['307']}, {'id': '307', 'type': 'string', 'children': [], 'value': '\'*** PYTHON PACKAGE "PYPERCLIP" NOT FOUND ***\''}; {'id': '308', 'type': 'expression_statement', 'children': ['309']}, {'id': '309', 'type': 'augmented_assignment', 'children': ['310', '311'], 'value': '+='}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '311', 'type': 'binary_operator', 'children': ['312', '313'], 'value': '+'}; {'id': '312', 'type': 'string', 'children': [], 'value': '" | "'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '314', 'type': 'if_statement', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'notes'}; {'id': '318', 'type': 'block', 'children': ['319']}, {'id': '319', 'type': 'if_statement', 'children': ['320', '323', '348']}; {'id': '320', 'type': 'comparison_operator', 'children': ['321', '322'], 'value': '=='}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '322', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '323', 'type': 'block', 'children': ['324', '328']}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'augmented_assignment', 'children': ['326', '327'], 'value': '+='}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '327', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '328', 'type': 'expression_statement', 'children': ['329']}, {'id': '329', 'type': 'augmented_assignment', 'children': ['330', '331'], 'value': '+='}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '331', 'type': 'call', 'children': ['332', '335']}; {'id': '332', 'type': 'attribute', 'children': ['333', '334']}, {'id': '333', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '335', 'type': 'generator_expression', 'children': ['336', '339']}; {'id': '336', 'type': 'binary_operator', 'children': ['337', '338'], 'value': '+'}, {'id': '337', 'type': 'string', 'children': [], 'value': '" "'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '339', 'type': 'for_in_clause', 'children': ['340', '341']}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '341', 'type': 'call', 'children': ['342', '347']}; {'id': '342', 'type': 'attribute', 'children': ['343', '346']}, {'id': '343', 'type': 'attribute', 'children': ['344', '345']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'notes'}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'splitlines'}, {'id': '347', 'type': 'argument_list', 'children': []}; {'id': '348', 'type': 'else_clause', 'children': ['349']}, {'id': '349', 'type': 'block', 'children': ['350', '360', '368']}; {'id': '350', 'type': 'expression_statement', 'children': ['351']}, {'id': '351', 'type': 'assignment', 'children': ['352', '353']}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '353', 'type': 'call', 'children': ['354', '359']}; {'id': '354', 'type': 'attribute', 'children': ['355', '358']}, {'id': '355', 'type': 'attribute', 'children': ['356', '357']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'notes'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'splitlines'}, {'id': '359', 'type': 'argument_list', 'children': []}; {'id': '360', 'type': 'expression_statement', 'children': ['361']}, {'id': '361', 'type': 'augmented_assignment', 'children': ['362', '363'], 'value': '+='}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '363', 'type': 'binary_operator', 'children': ['364', '365'], 'value': '+'}; {'id': '364', 'type': 'string', 'children': [], 'value': '" | "'}, {'id': '365', 'type': 'subscript', 'children': ['366', '367']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'lines'}, {'id': '367', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '368', 'type': 'if_statement', 'children': ['369', '375']}, {'id': '369', 'type': 'comparison_operator', 'children': ['370', '374'], 'value': '>'}; {'id': '370', 'type': 'call', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '372', 'type': 'argument_list', 'children': ['373']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'lines'}; {'id': '374', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '375', 'type': 'block', 'children': ['376']}; {'id': '376', 'type': 'expression_statement', 'children': ['377']}, {'id': '377', 'type': 'augmented_assignment', 'children': ['378', '379'], 'value': '+='}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '379', 'type': 'string', 'children': [], 'value': '" (...)"'}; {'id': '380', 'type': 'expression_statement', 'children': ['381']}, {'id': '381', 'type': 'call', 'children': ['382', '385']}; {'id': '382', 'type': 'attribute', 'children': ['383', '384']}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '385', 'type': 'argument_list', 'children': ['386']} | def pw(
ctx,
key_pattern,
user_pattern,
mode,
strict_flag,
user_flag,
file,
edit_subcommand,
gen_subcommand,
):
def handle_sigint(*_):
click.echo()
ctx.exit(1)
signal.signal(signal.SIGINT, handle_sigint)
if gen_subcommand:
length = int(key_pattern) if key_pattern else None
generate_password(mode, length)
return
elif edit_subcommand:
launch_editor(ctx, file)
return
if not os.path.exists(file):
click.echo("error: password store not found at '%s'" % file, err=True)
ctx.exit(1)
store = Store.load(file)
if not user_pattern:
user_pattern, _, key_pattern = key_pattern.rpartition("@")
results = store.search(key_pattern, user_pattern)
results = list(results)
if strict_flag and len(results) != 1:
click.echo(
"error: multiple or no records found (but using --strict flag)", err=True
)
ctx.exit(2)
if mode == Mode.RAW:
for entry in results:
click.echo(entry.user if user_flag else entry.password)
return
for idx, entry in enumerate(results):
line = highlight_match(key_pattern, entry.key)
if entry.user:
line += ": " + highlight_match(user_pattern, entry.user)
if mode == Mode.ECHO and not user_flag:
line += " | " + style_password(entry.password)
elif mode == Mode.COPY and idx == 0:
try:
import pyperclip
pyperclip.copy(entry.user if user_flag else entry.password)
result = style_success(
"*** %s COPIED TO CLIPBOARD ***"
% ("USERNAME" if user_flag else "PASSWORD")
)
except ImportError:
result = style_error('*** PYTHON PACKAGE "PYPERCLIP" NOT FOUND ***')
line += " | " + result
if entry.notes:
if idx == 0:
line += "\n"
line += "\n".join(" " + line for line in entry.notes.splitlines())
else:
lines = entry.notes.splitlines()
line += " | " + lines[0]
if len(lines) > 1:
line += " (...)"
click.echo(line) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'launch_editor'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '36', '66', '75', '101', '133', '142', '165', '178', '187', '211']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'editor'}; {'id': '10', 'type': 'call', 'children': ['11', '16']}, {'id': '11', 'type': 'attribute', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'environ'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'string', 'children': [], 'value': '"PW_EDITOR"'}; {'id': '18', 'type': 'if_statement', 'children': ['19', '21']}, {'id': '19', 'type': 'not_operator', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'editor'}, {'id': '21', 'type': 'block', 'children': ['22', '29']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': '"error: no editor set in PW_EDITOR environment variables"'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '46']}, {'id': '37', 'type': 'not_operator', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '44']}, {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '46', 'type': 'block', 'children': ['47', '59']}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '56']}, {'id': '53', 'type': 'binary_operator', 'children': ['54', '55'], 'value': '%'}; {'id': '54', 'type': 'string', 'children': [], 'value': '"error: password store not found at \'%s\'"'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '58', 'type': 'True', 'children': []}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'ctx'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'is_encrypted'}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': '_gpg'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'is_encrypted'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '75', 'type': 'if_statement', 'children': ['76', '77', '87']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'is_encrypted'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'original'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': '_gpg'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'decrypt'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '87', 'type': 'else_clause', 'children': ['88']}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'original'}; {'id': '92', 'type': 'call', 'children': ['93', '100']}, {'id': '93', 'type': 'attribute', 'children': ['94', '99']}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '96', 'type': 'argument_list', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '98', 'type': 'string', 'children': [], 'value': '"rb"'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '100', 'type': 'argument_list', 'children': []}, {'id': '101', 'type': 'if_statement', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'is_encrypted'}, {'id': '103', 'type': 'block', 'children': ['104', '115']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'recipient'}, {'id': '107', 'type': 'call', 'children': ['108', '113']}; {'id': '108', 'type': 'attribute', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'environ'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'string', 'children': [], 'value': '"PW_GPG_RECIPIENT"'}, {'id': '115', 'type': 'if_statement', 'children': ['116', '118']}; {'id': '116', 'type': 'not_operator', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'recipient'}; {'id': '118', 'type': 'block', 'children': ['119', '126']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'string', 'children': [], 'value': '"error: no recipient set in PW_GPG_RECIPIENT environment variables"'}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'ctx'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'ext'}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': '_gpg'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'unencrypted_ext'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'modified'}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'edit'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '156', '159', '162']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'original'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'decode'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'string', 'children': [], 'value': '"utf-8"'}; {'id': '156', 'type': 'keyword_argument', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'editor'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'editor'}, {'id': '159', 'type': 'keyword_argument', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'require_save'}, {'id': '161', 'type': 'True', 'children': []}; {'id': '162', 'type': 'keyword_argument', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'extension'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'ext'}, {'id': '165', 'type': 'if_statement', 'children': ['166', '169']}; {'id': '166', 'type': 'comparison_operator', 'children': ['167', '168'], 'value': 'is'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'modified'}; {'id': '168', 'type': 'None', 'children': []}, {'id': '169', 'type': 'block', 'children': ['170', '177']}; {'id': '170', 'type': 'expression_statement', 'children': ['171']}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'string', 'children': [], 'value': '"not modified"'}, {'id': '177', 'type': 'return_statement', 'children': []}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'modified'}, {'id': '181', 'type': 'call', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'modified'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'encode'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'string', 'children': [], 'value': '"utf-8"'}, {'id': '187', 'type': 'if_statement', 'children': ['188', '190']}; {'id': '188', 'type': 'not_operator', 'children': ['189']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'is_encrypted'}; {'id': '190', 'type': 'block', 'children': ['191', '210']}, {'id': '191', 'type': 'with_statement', 'children': ['192', '202']}; {'id': '192', 'type': 'with_clause', 'children': ['193']}, {'id': '193', 'type': 'with_item', 'children': ['194']}; {'id': '194', 'type': 'as_pattern', 'children': ['195', '200']}, {'id': '195', 'type': 'call', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '197', 'type': 'argument_list', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '199', 'type': 'string', 'children': [], 'value': '"wb"'}; {'id': '200', 'type': 'as_pattern_target', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'fp'}; {'id': '202', 'type': 'block', 'children': ['203']}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'fp'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '208', 'type': 'argument_list', 'children': ['209']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'modified'}; {'id': '210', 'type': 'return_statement', 'children': []}, {'id': '211', 'type': 'expression_statement', 'children': ['212']}; {'id': '212', 'type': 'call', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': '_gpg'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'encrypt'}; {'id': '216', 'type': 'argument_list', 'children': ['217', '220', '223']}, {'id': '217', 'type': 'keyword_argument', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'recipient'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'recipient'}; {'id': '220', 'type': 'keyword_argument', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'dest_path'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '223', 'type': 'keyword_argument', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'modified'} | def launch_editor(ctx, file):
editor = os.environ.get("PW_EDITOR")
if not editor:
click.echo("error: no editor set in PW_EDITOR environment variables")
ctx.exit(1)
if not os.path.exists(file):
click.echo("error: password store not found at '%s'" % file, err=True)
ctx.exit(1)
is_encrypted = _gpg.is_encrypted(file)
if is_encrypted:
original = _gpg.decrypt(file)
else:
original = open(file, "rb").read()
if is_encrypted:
recipient = os.environ.get("PW_GPG_RECIPIENT")
if not recipient:
click.echo(
"error: no recipient set in PW_GPG_RECIPIENT environment variables"
)
ctx.exit(1)
ext = _gpg.unencrypted_ext(file)
modified = click.edit(
original.decode("utf-8"), editor=editor, require_save=True, extension=ext
)
if modified is None:
click.echo("not modified")
return
modified = modified.encode("utf-8")
if not is_encrypted:
with open(file, "wb") as fp:
fp.write(modified)
return
_gpg.encrypt(recipient=recipient, dest_path=file, content=modified) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fit'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sim_mat'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'D_len'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'cidx'}, {'id': '7', 'type': 'block', 'children': ['8', '14', '166']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'min_energy'}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'inf'}; {'id': '14', 'type': 'for_statement', 'children': ['15', '16', '20']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '20', 'type': 'block', 'children': ['21', '53', '57', '61', '151']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'inds'}; {'id': '24', 'type': 'list_comprehension', 'children': ['25', '43', '49']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'argmin'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'list_comprehension', 'children': ['31', '40']}, {'id': '31', 'type': 'call', 'children': ['32', '37']}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'subscript', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sim_mat'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'idy'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'for_in_clause', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'cidx'}, {'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'idy'}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'D_len'}, {'id': '49', 'type': 'if_clause', 'children': ['50']}; {'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': 'in'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'idy'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sim_mat'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'cidx'}; {'id': '56', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'energy'}; {'id': '60', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '61', 'type': 'for_statement', 'children': ['62', '63', '69']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'inds'}, {'id': '69', 'type': 'block', 'children': ['70', '83', '91', '138', '142']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'indsi'}, {'id': '73', 'type': 'subscript', 'children': ['74', '82']}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '81'], 'value': '=='}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'inds'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '82', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '88']}, {'id': '85', 'type': 'pattern_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'minind'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'min_value'}; {'id': '88', 'type': 'expression_list', 'children': ['89', '90']}, {'id': '89', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'for_statement', 'children': ['92', '95', '99']}; {'id': '92', 'type': 'pattern_list', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'idy'}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'indsi'}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'if_statement', 'children': ['101', '104']}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '103'], 'value': 'in'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'idy'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'sim_mat'}; {'id': '104', 'type': 'block', 'children': ['105', '109', '125']}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '109', 'type': 'for_statement', 'children': ['110', '111', '112']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'indsi'}; {'id': '112', 'type': 'block', 'children': ['113']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'augmented_assignment', 'children': ['115', '116'], 'value': '+='}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '116', 'type': 'call', 'children': ['117', '122']}, {'id': '117', 'type': 'attribute', 'children': ['118', '121']}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'sim_mat'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'idy'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '122', 'type': 'argument_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '124', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '125', 'type': 'if_statement', 'children': ['126', '129']}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '128'], 'value': '<'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'min_value'}, {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'expression_statement', 'children': ['131']}, {'id': '131', 'type': 'assignment', 'children': ['132', '135']}; {'id': '132', 'type': 'pattern_list', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'minind'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'min_value'}, {'id': '135', 'type': 'expression_list', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'augmented_assignment', 'children': ['140', '141'], 'value': '+='}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'energy'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'min_value'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'cidx'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'subscript', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'indsi'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'minind'}, {'id': '151', 'type': 'if_statement', 'children': ['152', '155']}; {'id': '152', 'type': 'comparison_operator', 'children': ['153', '154'], 'value': '<'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'energy'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'min_energy'}, {'id': '155', 'type': 'block', 'children': ['156']}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '162']}; {'id': '158', 'type': 'pattern_list', 'children': ['159', '160', '161']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'min_energy'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'inds_min'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'cidx_min'}; {'id': '162', 'type': 'expression_list', 'children': ['163', '164', '165']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'energy'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'inds'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'cidx'}; {'id': '166', 'type': 'return_statement', 'children': ['167']}, {'id': '167', 'type': 'expression_list', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'inds_min'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'cidx_min'} | def fit(sim_mat, D_len, cidx):
min_energy = np.inf
for j in range(3):
inds = [np.argmin([sim_mat[idy].get(idx, 0) for idx in cidx]) for idy in range(D_len) if idy in sim_mat]
cidx = []
energy = 0
for i in np.unique(inds):
indsi = np.where(inds == i)[0]
minind, min_value = 0, 0
for index, idy in enumerate(indsi):
if idy in sim_mat:
value = 0
for idx in indsi:
value += sim_mat[idy].get(idx, 0)
if value < min_value:
minind, min_value = index, value
energy += min_value
cidx.append(indsi[minind])
if energy < min_energy:
min_energy, inds_min, cidx_min = energy, inds, cidx
return inds_min, cidx_min |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'authenticate'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'remote_user'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '18', '24', '28', '37', '283']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '13']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'remote_user'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'remote_user'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '18', 'type': 'if_statement', 'children': ['19', '21']}, {'id': '19', 'type': 'not_operator', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'remote_user'}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'return_statement', 'children': ['23']}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '27', 'type': 'None', 'children': []}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'clean_username'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'remote_user'}, {'id': '37', 'type': 'try_statement', 'children': ['38', '176']}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'if_statement', 'children': ['40', '43', '155']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'create_unknown_user'}, {'id': '43', 'type': 'block', 'children': ['44', '48', '113', '135']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'defaults'}, {'id': '47', 'type': 'dictionary', 'children': []}; {'id': '48', 'type': 'if_statement', 'children': ['49', '54']}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '51', 'type': 'argument_list', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '54', 'type': 'block', 'children': ['55', '59', '89']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'session_data'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '59', 'type': 'if_statement', 'children': ['60', '63']}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '62'], 'value': 'in'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'full_name'"}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'session_data'}, {'id': '63', 'type': 'block', 'children': ['64', '76']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '70']}; {'id': '66', 'type': 'pattern_list', 'children': ['67', '68', '69']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'first_name'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'last_name'}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'full_name_natural_split'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'session_data'}, {'id': '75', 'type': 'string', 'children': [], 'value': "'full_name'"}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'defaults'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'dictionary', 'children': ['83', '86']}, {'id': '83', 'type': 'pair', 'children': ['84', '85']}; {'id': '84', 'type': 'string', 'children': [], 'value': "'first_name'"}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'first_name'}; {'id': '86', 'type': 'pair', 'children': ['87', '88']}, {'id': '87', 'type': 'string', 'children': [], 'value': "'last_name'"}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'last_name'}, {'id': '89', 'type': 'for_statement', 'children': ['90', '91', '95']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '91', 'type': 'tuple', 'children': ['92', '93', '94']}; {'id': '92', 'type': 'string', 'children': [], 'value': "'email'"}, {'id': '93', 'type': 'string', 'children': [], 'value': "'first_name'"}; {'id': '94', 'type': 'string', 'children': [], 'value': "'last_name'"}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'if_statement', 'children': ['97', '100']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '99'], 'value': 'in'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'session_data'}; {'id': '100', 'type': 'block', 'children': ['101']}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'defaults'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'dictionary', 'children': ['108']}; {'id': '108', 'type': 'pair', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '110', 'type': 'subscript', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'session_data'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '118']}, {'id': '115', 'type': 'pattern_list', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'created'}; {'id': '118', 'type': 'call', 'children': ['119', '124']}, {'id': '119', 'type': 'attribute', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'UserModel'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': '_default_manager'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'get_or_create'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'dictionary_splat', 'children': ['126']}; {'id': '126', 'type': 'dictionary', 'children': ['127', '132']}, {'id': '127', 'type': 'pair', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'UserModel'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'USERNAME_FIELD'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '132', 'type': 'pair', 'children': ['133', '134']}, {'id': '133', 'type': 'string', 'children': [], 'value': "'defaults'"}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'defaults'}, {'id': '135', 'type': 'if_statement', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'created'}, {'id': '137', 'type': 'block', 'children': ['138', '146']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'string', 'children': [], 'value': '"created user \'%s\' in database."'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'configure_user'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '155', 'type': 'else_clause', 'children': ['156']}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'try_statement', 'children': ['158', '170']}; {'id': '158', 'type': 'block', 'children': ['159']}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'assignment', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '162', 'type': 'call', 'children': ['163', '168']}, {'id': '163', 'type': 'attribute', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'UserModel'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': '_default_manager'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'get_by_natural_key'}; {'id': '168', 'type': 'argument_list', 'children': ['169']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '170', 'type': 'except_clause', 'children': ['171', '174']}, {'id': '171', 'type': 'attribute', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'UserModel'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'DoesNotExist'}; {'id': '174', 'type': 'block', 'children': ['175']}, {'id': '175', 'type': 'pass_statement', 'children': []}; {'id': '176', 'type': 'except_clause', 'children': ['177', '181']}, {'id': '177', 'type': 'as_pattern', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'DatabaseError'}, {'id': '179', 'type': 'as_pattern_target', 'children': ['180']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'err'}, {'id': '181', 'type': 'block', 'children': ['182', '190', '237', '260', '273']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'call', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '187', 'type': 'argument_list', 'children': ['188', '189']}; {'id': '188', 'type': 'string', 'children': [], 'value': '"User table missing from database? (err:%s)"'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'err'}; {'id': '190', 'type': 'for_statement', 'children': ['191', '192', '200']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'itervalues'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'users'}; {'id': '200', 'type': 'block', 'children': ['201', '215']}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'call', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '206', 'type': 'argument_list', 'children': ['207', '208', '209', '212']}, {'id': '207', 'type': 'string', 'children': [], 'value': '"match %s with User(id=%d, username=%s)"'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '215', 'type': 'if_statement', 'children': ['216', '221']}; {'id': '216', 'type': 'comparison_operator', 'children': ['217', '220'], 'value': '=='}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '221', 'type': 'block', 'children': ['222', '235']}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'call', 'children': ['224', '227']}; {'id': '224', 'type': 'attribute', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '227', 'type': 'argument_list', 'children': ['228', '229', '232']}; {'id': '228', 'type': 'string', 'children': [], 'value': '"found %d %s"'}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '235', 'type': 'return_statement', 'children': ['236']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'assignment', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'UserModel'}; {'id': '242', 'type': 'argument_list', 'children': ['243', '257']}, {'id': '243', 'type': 'keyword_argument', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '245', 'type': 'call', 'children': ['246', '249']}; {'id': '246', 'type': 'attribute', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'randint'}, {'id': '249', 'type': 'argument_list', 'children': ['250', '251']}; {'id': '250', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '251', 'type': 'binary_operator', 'children': ['252', '256'], 'value': '-'}; {'id': '252', 'type': 'parenthesized_expression', 'children': ['253']}, {'id': '253', 'type': 'binary_operator', 'children': ['254', '255'], 'value': '<<'}; {'id': '254', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '255', 'type': 'integer', 'children': [], 'value': '32'}; {'id': '256', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '257', 'type': 'keyword_argument', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'username'}; {'id': '260', 'type': 'expression_statement', 'children': ['261']}, {'id': '261', 'type': 'call', 'children': ['262', '265']}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '265', 'type': 'argument_list', 'children': ['266', '267', '270']}; {'id': '266', 'type': 'string', 'children': [], 'value': '"add User(id=%d, username=%s) to cache."'}, {'id': '267', 'type': 'attribute', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '270', 'type': 'attribute', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'username'}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'assignment', 'children': ['275', '282']}, {'id': '275', 'type': 'subscript', 'children': ['276', '279']}; {'id': '276', 'type': 'attribute', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'users'}, {'id': '279', 'type': 'attribute', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '283', 'type': 'return_statement', 'children': ['284']}; {'id': '284', 'type': 'conditional_expression', 'children': ['285', '286', '292'], 'value': 'if'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '286', 'type': 'call', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'user_can_authenticate'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'user'} | def authenticate(self, request, remote_user=None):
if not remote_user:
remote_user = request
if not remote_user:
return None
user = None
username = self.clean_username(remote_user)
try:
if self.create_unknown_user:
defaults = {}
if isinstance(request, dict):
session_data = request
if 'full_name' in session_data:
first_name, _, last_name = full_name_natural_split(
session_data['full_name'])
defaults.update({
'first_name': first_name,
'last_name': last_name
})
for key in ('email', 'first_name', 'last_name'):
if key in session_data:
defaults.update({key: session_data[key]})
user, created = UserModel._default_manager.get_or_create(**{
UserModel.USERNAME_FIELD: username,
'defaults': defaults,
})
if created:
LOGGER.debug("created user '%s' in database.", username)
user = self.configure_user(user)
else:
try:
user = UserModel._default_manager.get_by_natural_key(
username)
except UserModel.DoesNotExist:
pass
except DatabaseError as err:
LOGGER.debug("User table missing from database? (err:%s)", err)
for user in six.itervalues(self.users):
LOGGER.debug("match %s with User(id=%d, username=%s)",
username, user.id, user.username)
if user.username == username:
LOGGER.debug("found %d %s", user.id, user.username)
return user
user = UserModel(
id=random.randint(1, (1 << 32) - 1), username=username)
LOGGER.debug("add User(id=%d, username=%s) to cache.",
user.id, user.username)
self.users[user.id] = user
return user if self.user_can_authenticate(user) else None |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'bc2pg'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'db_url'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'pagesize'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'sortby'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'max_workers'}, {'id': '13', 'type': 'block', 'children': ['14', '23', '42', '50', '58', '67', '93', '111']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'src'}, {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'bcdata'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'validate_name'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '28']}, {'id': '25', 'type': 'pattern_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'src_schema'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'src_table'}; {'id': '28', 'type': 'list_comprehension', 'children': ['29', '34']}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '33', 'type': 'argument_list', 'children': []}; {'id': '34', 'type': 'for_in_clause', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'src'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'string', 'children': [], 'value': '"."'}; {'id': '42', 'type': 'if_statement', 'children': ['43', '45']}, {'id': '43', 'type': 'not_operator', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'src_schema'}; {'id': '50', 'type': 'if_statement', 'children': ['51', '53']}, {'id': '51', 'type': 'not_operator', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'src_table'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'conn'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'pgdata'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'connect'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'db_url'}, {'id': '67', 'type': 'if_statement', 'children': ['68', '73']}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': 'not'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'schemas'}, {'id': '73', 'type': 'block', 'children': ['74', '86']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'string', 'children': [], 'value': '"Schema {} does not exist, creating it"'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'create_schema'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'param_dicts'}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'bcdata'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'define_request'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102', '105', '108']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '102', 'type': 'keyword_argument', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'sortby'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'sortby'}; {'id': '108', 'type': 'keyword_argument', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'pagesize'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'pagesize'}, {'id': '111', 'type': 'try_statement', 'children': ['112', '377']}; {'id': '112', 'type': 'block', 'children': ['113', '125', '135', '142', '170', '217', '359']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'payload'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'urlencode'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '122']}, {'id': '119', 'type': 'subscript', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'param_dicts'}, {'id': '121', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'doseq'}; {'id': '124', 'type': 'True', 'children': []}, {'id': '125', 'type': 'expression_statement', 'children': ['126']}; {'id': '126', 'type': 'assignment', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '134'], 'value': '+'}, {'id': '129', 'type': 'binary_operator', 'children': ['130', '133'], 'value': '+'}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'bcdata'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'WFS_URL'}, {'id': '133', 'type': 'string', 'children': [], 'value': '"?"'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'payload'}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'assignment', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'db'}; {'id': '138', 'type': 'call', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'parse_db_url'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'db_url'}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'db_string'}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'string', 'children': [], 'value': '"PG:host={h} user={u} dbname={db} password={pwd}"'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '155', '160', '165']}; {'id': '150', 'type': 'keyword_argument', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'h'}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'db'}; {'id': '154', 'type': 'string', 'children': [], 'value': '"host"'}, {'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'u'}, {'id': '157', 'type': 'subscript', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'db'}, {'id': '159', 'type': 'string', 'children': [], 'value': '"user"'}; {'id': '160', 'type': 'keyword_argument', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'db'}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'db'}; {'id': '164', 'type': 'string', 'children': [], 'value': '"database"'}, {'id': '165', 'type': 'keyword_argument', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'pwd'}, {'id': '167', 'type': 'subscript', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'db'}, {'id': '169', 'type': 'string', 'children': [], 'value': '"password"'}; {'id': '170', 'type': 'if_statement', 'children': ['171', '173']}, {'id': '171', 'type': 'not_operator', 'children': ['172']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '173', 'type': 'block', 'children': ['174', '198', '210']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'command'}, {'id': '177', 'type': 'list', 'children': ['178', '179', '180', '181', '182', '188', '189', '190', '191', '192', '193', '194', '195', '196', '197'], 'value': '[\n "ogr2ogr",\n "-lco",\n "OVERWRITE=YES",\n "-lco",\n "SCHEMA={}".format(schema),\n "-lco",\n "GEOMETRY_NAME=geom",\n "-f",\n "PostgreSQL",\n db_string,\n "-t_srs",\n "EPSG:3005",\n "-nln",\n table,\n url,\n ]'}; {'id': '178', 'type': 'string', 'children': [], 'value': '"ogr2ogr"'}, {'id': '179', 'type': 'string', 'children': [], 'value': '"-lco"'}; {'id': '180', 'type': 'string', 'children': [], 'value': '"OVERWRITE=YES"'}, {'id': '181', 'type': 'string', 'children': [], 'value': '"-lco"'}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'string', 'children': [], 'value': '"SCHEMA={}"'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '186', 'type': 'argument_list', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '188', 'type': 'string', 'children': [], 'value': '"-lco"'}, {'id': '189', 'type': 'string', 'children': [], 'value': '"GEOMETRY_NAME=geom"'}; {'id': '190', 'type': 'string', 'children': [], 'value': '"-f"'}, {'id': '191', 'type': 'string', 'children': [], 'value': '"PostgreSQL"'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'db_string'}, {'id': '193', 'type': 'string', 'children': [], 'value': '"-t_srs"'}; {'id': '194', 'type': 'string', 'children': [], 'value': '"EPSG:3005"'}, {'id': '195', 'type': 'string', 'children': [], 'value': '"-nln"'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '203', 'type': 'argument_list', 'children': ['204']}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'string', 'children': [], 'value': '" "'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '208', 'type': 'argument_list', 'children': ['209']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'command'}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'call', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'run'}, {'id': '215', 'type': 'argument_list', 'children': ['216']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'command'}, {'id': '217', 'type': 'if_statement', 'children': ['218', '226']}; {'id': '218', 'type': 'boolean_operator', 'children': ['219', '225'], 'value': 'or'}, {'id': '219', 'type': 'comparison_operator', 'children': ['220', '224'], 'value': '>'}; {'id': '220', 'type': 'call', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '222', 'type': 'argument_list', 'children': ['223']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'param_dicts'}; {'id': '224', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '226', 'type': 'block', 'children': ['227', '240', '244', '303', '310']}, {'id': '227', 'type': 'if_statement', 'children': ['228', '229', '234']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '229', 'type': 'block', 'children': ['230']}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'assignment', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '233', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '234', 'type': 'else_clause', 'children': ['235']}, {'id': '235', 'type': 'block', 'children': ['236']}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'assignment', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '239', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'commands'}, {'id': '243', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '244', 'type': 'for_statement', 'children': ['245', '248', '256']}, {'id': '245', 'type': 'pattern_list', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'chunk'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'paramdict'}; {'id': '248', 'type': 'call', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '250', 'type': 'argument_list', 'children': ['251']}, {'id': '251', 'type': 'subscript', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'param_dicts'}, {'id': '253', 'type': 'slice', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '255', 'type': 'colon', 'children': []}; {'id': '256', 'type': 'block', 'children': ['257', '267', '277', '296']}, {'id': '257', 'type': 'expression_statement', 'children': ['258']}; {'id': '258', 'type': 'assignment', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'payload'}; {'id': '260', 'type': 'call', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'urlencode'}; {'id': '262', 'type': 'argument_list', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'paramdict'}; {'id': '264', 'type': 'keyword_argument', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'doseq'}; {'id': '266', 'type': 'True', 'children': []}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'assignment', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '270', 'type': 'binary_operator', 'children': ['271', '276'], 'value': '+'}, {'id': '271', 'type': 'binary_operator', 'children': ['272', '275'], 'value': '+'}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'bcdata'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'WFS_URL'}, {'id': '275', 'type': 'string', 'children': [], 'value': '"?"'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'payload'}, {'id': '277', 'type': 'expression_statement', 'children': ['278']}; {'id': '278', 'type': 'assignment', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'command'}; {'id': '280', 'type': 'list', 'children': ['281', '282', '283', '284', '285', '286', '291', '292', '293', '294', '295'], 'value': '[\n "ogr2ogr",\n "-update",\n "-append",\n "-f",\n "PostgreSQL",\n db_string + " active_schema=" + schema,\n "-t_srs",\n "EPSG:3005",\n "-nln",\n table,\n url,\n ]'}, {'id': '281', 'type': 'string', 'children': [], 'value': '"ogr2ogr"'}; {'id': '282', 'type': 'string', 'children': [], 'value': '"-update"'}, {'id': '283', 'type': 'string', 'children': [], 'value': '"-append"'}; {'id': '284', 'type': 'string', 'children': [], 'value': '"-f"'}, {'id': '285', 'type': 'string', 'children': [], 'value': '"PostgreSQL"'}; {'id': '286', 'type': 'binary_operator', 'children': ['287', '290'], 'value': '+'}, {'id': '287', 'type': 'binary_operator', 'children': ['288', '289'], 'value': '+'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'db_string'}, {'id': '289', 'type': 'string', 'children': [], 'value': '" active_schema="'}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'schema'}, {'id': '291', 'type': 'string', 'children': [], 'value': '"-t_srs"'}; {'id': '292', 'type': 'string', 'children': [], 'value': '"EPSG:3005"'}, {'id': '293', 'type': 'string', 'children': [], 'value': '"-nln"'}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'table'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '296', 'type': 'expression_statement', 'children': ['297']}, {'id': '297', 'type': 'call', 'children': ['298', '301']}; {'id': '298', 'type': 'attribute', 'children': ['299', '300']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'commands'}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '301', 'type': 'argument_list', 'children': ['302']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'command'}, {'id': '303', 'type': 'expression_statement', 'children': ['304']}; {'id': '304', 'type': 'assignment', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'pool'}; {'id': '306', 'type': 'call', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'Pool'}; {'id': '308', 'type': 'argument_list', 'children': ['309']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'max_workers'}; {'id': '310', 'type': 'with_statement', 'children': ['311', '337']}, {'id': '311', 'type': 'with_clause', 'children': ['312']}; {'id': '312', 'type': 'with_item', 'children': ['313']}, {'id': '313', 'type': 'as_pattern', 'children': ['314', '335']}; {'id': '314', 'type': 'call', 'children': ['315', '318']}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'progressbar'}; {'id': '318', 'type': 'argument_list', 'children': ['319', '329']}, {'id': '319', 'type': 'call', 'children': ['320', '323']}; {'id': '320', 'type': 'attribute', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'pool'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'imap'}, {'id': '323', 'type': 'argument_list', 'children': ['324', '328']}; {'id': '324', 'type': 'call', 'children': ['325', '326']}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'partial'}; {'id': '326', 'type': 'argument_list', 'children': ['327']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'call'}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'commands'}, {'id': '329', 'type': 'keyword_argument', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '331', 'type': 'call', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '333', 'type': 'argument_list', 'children': ['334']}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'param_dicts'}, {'id': '335', 'type': 'as_pattern_target', 'children': ['336']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'bar'}, {'id': '337', 'type': 'block', 'children': ['338']}; {'id': '338', 'type': 'for_statement', 'children': ['339', '340', '341']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'returncode'}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'bar'}, {'id': '341', 'type': 'block', 'children': ['342']}; {'id': '342', 'type': 'if_statement', 'children': ['343', '346']}, {'id': '343', 'type': 'comparison_operator', 'children': ['344', '345'], 'value': '!='}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'returncode'}, {'id': '345', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '346', 'type': 'block', 'children': ['347']}, {'id': '347', 'type': 'expression_statement', 'children': ['348']}; {'id': '348', 'type': 'call', 'children': ['349', '352']}, {'id': '349', 'type': 'attribute', 'children': ['350', '351']}; {'id': '350', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '352', 'type': 'argument_list', 'children': ['353']}, {'id': '353', 'type': 'call', 'children': ['354', '357']}; {'id': '354', 'type': 'attribute', 'children': ['355', '356']}, {'id': '355', 'type': 'string', 'children': [], 'value': '"Command failed: {}"'}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '357', 'type': 'argument_list', 'children': ['358']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'returncode'}, {'id': '359', 'type': 'expression_statement', 'children': ['360']}; {'id': '360', 'type': 'call', 'children': ['361', '364']}, {'id': '361', 'type': 'attribute', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'echo'}; {'id': '364', 'type': 'argument_list', 'children': ['365']}, {'id': '365', 'type': 'call', 'children': ['366', '369']}; {'id': '366', 'type': 'attribute', 'children': ['367', '368']}, {'id': '367', 'type': 'string', 'children': [], 'value': '"Load of {} to {} in {} complete"'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '369', 'type': 'argument_list', 'children': ['370', '371', '376']}; {'id': '370', 'type': 'identifier', 'children': [], 'value': 'src'}, {'id': '371', 'type': 'binary_operator', 'children': ['372', '375'], 'value': '+'}; {'id': '372', 'type': 'binary_operator', 'children': ['373', '374'], 'value': '+'}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '374', 'type': 'string', 'children': [], 'value': '"."'}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'table'}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'db_url'}, {'id': '377', 'type': 'except_clause', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '379', 'type': 'block', 'children': ['380', '387']}; {'id': '380', 'type': 'expression_statement', 'children': ['381']}, {'id': '381', 'type': 'call', 'children': ['382', '385']}; {'id': '382', 'type': 'attribute', 'children': ['383', '384']}, {'id': '383', 'type': 'identifier', 'children': [], 'value': 'click'}; {'id': '384', 'type': 'identifier', 'children': [], 'value': 'echo'}, {'id': '385', 'type': 'argument_list', 'children': ['386']}; {'id': '386', 'type': 'string', 'children': [], 'value': '"Data load failed"'}, {'id': '387', 'type': 'raise_statement', 'children': ['388']}; {'id': '388', 'type': 'call', 'children': ['389', '392']}, {'id': '389', 'type': 'attribute', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'click'}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'Abort'} | def bc2pg(dataset, db_url, table, schema, query, append, pagesize, sortby, max_workers):
src = bcdata.validate_name(dataset)
src_schema, src_table = [i.lower() for i in src.split(".")]
if not schema:
schema = src_schema
if not table:
table = src_table
conn = pgdata.connect(db_url)
if schema not in conn.schemas:
click.echo("Schema {} does not exist, creating it".format(schema))
conn.create_schema(schema)
param_dicts = bcdata.define_request(
dataset, query=query, sortby=sortby, pagesize=pagesize
)
try:
payload = urlencode(param_dicts[0], doseq=True)
url = bcdata.WFS_URL + "?" + payload
db = parse_db_url(db_url)
db_string = "PG:host={h} user={u} dbname={db} password={pwd}".format(
h=db["host"], u=db["user"], db=db["database"], pwd=db["password"]
)
if not append:
command = [
"ogr2ogr",
"-lco",
"OVERWRITE=YES",
"-lco",
"SCHEMA={}".format(schema),
"-lco",
"GEOMETRY_NAME=geom",
"-f",
"PostgreSQL",
db_string,
"-t_srs",
"EPSG:3005",
"-nln",
table,
url,
]
click.echo(" ".join(command))
subprocess.run(command)
if len(param_dicts) > 1 or append:
if append:
idx = 0
else:
idx = 1
commands = []
for chunk, paramdict in enumerate(param_dicts[idx:]):
payload = urlencode(paramdict, doseq=True)
url = bcdata.WFS_URL + "?" + payload
command = [
"ogr2ogr",
"-update",
"-append",
"-f",
"PostgreSQL",
db_string + " active_schema=" + schema,
"-t_srs",
"EPSG:3005",
"-nln",
table,
url,
]
commands.append(command)
pool = Pool(max_workers)
with click.progressbar(
pool.imap(partial(call), commands), length=len(param_dicts)
) as bar:
for returncode in bar:
if returncode != 0:
click.echo("Command failed: {}".format(returncode))
click.echo(
"Load of {} to {} in {} complete".format(src, schema + "." + table, db_url)
)
except Exception:
click.echo("Data load failed")
raise click.Abort() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '__parseFormat'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'fps'}, {'id': '9', 'type': 'integer', 'children': [], 'value': '25'}; {'id': '10', 'type': 'block', 'children': ['11', '13', '17', '21']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'''Actual parser. Please note that time_to is not required to process as not all subtitles\n provide it.'''"}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'headerFound'}; {'id': '16', 'type': 'False', 'children': []}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'subSection'}; {'id': '20', 'type': 'string', 'children': [], 'value': "''"}, {'id': '21', 'type': 'for_statement', 'children': ['22', '25', '29']}; {'id': '22', 'type': 'pattern_list', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lineNo'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '29', 'type': 'block', 'children': ['30', '40', '58', '69']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '_initialLinePrepare'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'lineNo'}; {'id': '40', 'type': 'if_statement', 'children': ['41', '56']}, {'id': '41', 'type': 'boolean_operator', 'children': ['42', '51'], 'value': 'and'}; {'id': '42', 'type': 'boolean_operator', 'children': ['43', '47'], 'value': 'and'}, {'id': '43', 'type': 'not_operator', 'children': ['44']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'WITH_HEADER'}, {'id': '47', 'type': 'not_operator', 'children': ['48']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': '_formatFound'}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': '>'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'lineNo'}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': '_maxFmtSearch'}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'return_statement', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'subSection'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'string', 'children': [], 'value': "''"}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'list', 'children': ['67', '68'], 'value': '[subSection, line]'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'subSection'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '69', 'type': 'if_statement', 'children': ['70', '76', '114']}; {'id': '70', 'type': 'boolean_operator', 'children': ['71', '74'], 'value': 'and'}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'WITH_HEADER'}; {'id': '74', 'type': 'not_operator', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'headerFound'}; {'id': '76', 'type': 'block', 'children': ['77', '85', '101']}, {'id': '77', 'type': 'if_statement', 'children': ['78', '83']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': '>'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'lineNo'}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': '_maxHeaderLen'}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'return_statement', 'children': []}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'headerFound'}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'addHeaderInfo'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'subSection'}; {'id': '94', 'type': 'call', 'children': ['95', '100']}, {'id': '95', 'type': 'attribute', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': '_subtitles'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '100', 'type': 'argument_list', 'children': []}, {'id': '101', 'type': 'if_statement', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'headerFound'}, {'id': '103', 'type': 'block', 'children': ['104', '110']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': '_formatFound'}, {'id': '109', 'type': 'True', 'children': []}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'subSection'}, {'id': '113', 'type': 'string', 'children': [], 'value': "''"}; {'id': '114', 'type': 'elif_clause', 'children': ['115', '131']}, {'id': '115', 'type': 'boolean_operator', 'children': ['116', '122'], 'value': 'or'}; {'id': '116', 'type': 'call', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'fmt'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'subtitleEnds'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '122', 'type': 'comparison_operator', 'children': ['123', '127'], 'value': '=='}, {'id': '123', 'type': 'parenthesized_expression', 'children': ['124']}; {'id': '124', 'type': 'binary_operator', 'children': ['125', '126'], 'value': '+'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'lineNo'}; {'id': '126', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '127', 'type': 'call', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '131', 'type': 'block', 'children': ['132', '142', '183', '235']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'subtitle'}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'fmt'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'createSubtitle'}, {'id': '139', 'type': 'argument_list', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'fps'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'subSection'}; {'id': '142', 'type': 'if_statement', 'children': ['143', '146']}, {'id': '143', 'type': 'comparison_operator', 'children': ['144', '145'], 'value': 'is'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'subtitle'}, {'id': '145', 'type': 'None', 'children': []}; {'id': '146', 'type': 'block', 'children': ['147']}, {'id': '147', 'type': 'if_statement', 'children': ['148', '154', '160', '180']}; {'id': '148', 'type': 'comparison_operator', 'children': ['149', '150'], 'value': 'in'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'subSection'}; {'id': '150', 'type': 'tuple', 'children': ['151', '152', '153']}, {'id': '151', 'type': 'string', 'children': [], 'value': "'\\n'"}; {'id': '152', 'type': 'string', 'children': [], 'value': "'\\r\\n'"}, {'id': '153', 'type': 'string', 'children': [], 'value': "'\\r'"}; {'id': '154', 'type': 'block', 'children': ['155', '159']}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'subSection'}; {'id': '158', 'type': 'string', 'children': [], 'value': "''"}, {'id': '159', 'type': 'continue_statement', 'children': []}; {'id': '160', 'type': 'elif_clause', 'children': ['161', '170']}, {'id': '161', 'type': 'comparison_operator', 'children': ['162', '169'], 'value': '>'}; {'id': '162', 'type': 'call', 'children': ['163', '168']}, {'id': '163', 'type': 'attribute', 'children': ['164', '167']}; {'id': '164', 'type': 'attribute', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': '_subtitles'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '168', 'type': 'argument_list', 'children': []}, {'id': '169', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'raise_statement', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'SubParsingError'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '179']}, {'id': '175', 'type': 'call', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'string', 'children': [], 'value': '"Parsing error"'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'lineNo'}; {'id': '180', 'type': 'else_clause', 'children': ['181']}, {'id': '181', 'type': 'block', 'children': ['182']}; {'id': '182', 'type': 'return_statement', 'children': []}, {'id': '183', 'type': 'if_statement', 'children': ['184', '191', '221', '232']}; {'id': '184', 'type': 'boolean_operator', 'children': ['185', '188'], 'value': 'and'}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'subtitle'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'subtitle'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'text'}, {'id': '191', 'type': 'block', 'children': ['192', '198']}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'assignment', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': '_formatFound'}, {'id': '197', 'type': 'True', 'children': []}; {'id': '198', 'type': 'try_statement', 'children': ['199', '209']}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'call', 'children': ['202', '207']}; {'id': '202', 'type': 'attribute', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': '_subtitles'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'subtitle'}, {'id': '209', 'type': 'except_clause', 'children': ['210', '214']}; {'id': '210', 'type': 'as_pattern', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'SubException'}; {'id': '212', 'type': 'as_pattern_target', 'children': ['213']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '214', 'type': 'block', 'children': ['215']}, {'id': '215', 'type': 'raise_statement', 'children': ['216']}; {'id': '216', 'type': 'call', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'SubParsingError'}; {'id': '218', 'type': 'argument_list', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'lineNo'}, {'id': '221', 'type': 'elif_clause', 'children': ['222', '230']}; {'id': '222', 'type': 'boolean_operator', 'children': ['223', '226'], 'value': 'and'}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'subtitle'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '226', 'type': 'not_operator', 'children': ['227']}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'subtitle'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'text'}; {'id': '230', 'type': 'block', 'children': ['231']}, {'id': '231', 'type': 'pass_statement', 'children': []}; {'id': '232', 'type': 'else_clause', 'children': ['233']}, {'id': '233', 'type': 'block', 'children': ['234']}; {'id': '234', 'type': 'return_statement', 'children': []}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'assignment', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'subSection'} | def __parseFormat(self, fmt, content, fps = 25):
'''Actual parser. Please note that time_to is not required to process as not all subtitles
provide it.'''
headerFound = False
subSection = ''
for lineNo, line in enumerate(content):
line = self._initialLinePrepare(line, lineNo)
if not fmt.WITH_HEADER and not self._formatFound and lineNo > self._maxFmtSearch:
return
subSection = ''.join([subSection, line])
if fmt.WITH_HEADER and not headerFound:
if lineNo > self._maxHeaderLen:
return
headerFound = fmt.addHeaderInfo(subSection, self._subtitles.header())
if headerFound:
self._formatFound = True
subSection = ''
elif fmt.subtitleEnds(line) or (lineNo + 1) == len(content):
subtitle = fmt.createSubtitle(fps, subSection)
if subtitle is None:
if subSection in ('\n', '\r\n', '\r'):
subSection = ''
continue
elif self._subtitles.size() > 0:
raise SubParsingError(_("Parsing error"), lineNo)
else:
return
if subtitle.start and subtitle.text:
self._formatFound = True
try:
self._subtitles.append(subtitle)
except SubException as msg:
raise SubParsingError(msg, lineNo)
elif subtitle.start and not subtitle.text:
pass
else:
return
subSection = '' |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_json'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'space'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'rel_path'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'get_all'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '37', '45', '57', '82', '146']}, {'id': '19', 'type': 'if_statement', 'children': ['20', '29']}; {'id': '20', 'type': 'boolean_operator', 'children': ['21', '24'], 'value': 'and'}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '23'], 'value': 'is'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'space'}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'comparison_operator', 'children': ['25', '26'], 'value': 'not'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '26', 'type': 'tuple', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'Space'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'Event'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'raise_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'concatenated_string', 'children': ['35', '36']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'In general, `API._get_json` should always '"}; {'id': '36', 'type': 'string', 'children': [], 'value': "'be called with a `space` argument.'"}, {'id': '37', 'type': 'if_statement', 'children': ['38', '40']}; {'id': '38', 'type': 'not_operator', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '44', 'type': 'dictionary', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '50']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'extra_params'}, {'id': '49', 'type': 'string', 'children': [], 'value': "'page'"}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'extra_params'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': "'page'"}; {'id': '56', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'{0}/{1}/{2}.json?{3}'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '64', 'type': 'argument_list', 'children': ['65', '68', '71', '76']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'settings'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'API_ROOT_PATH'}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'settings'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'API_VERSION'}, {'id': '71', 'type': 'boolean_operator', 'children': ['72', '73'], 'value': 'or'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'rel_path'}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'rel_path'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'urllib'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'urlencode'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '82', 'type': 'if_statement', 'children': ['83', '92', '101']}, {'id': '83', 'type': 'boolean_operator', 'children': ['84', '87'], 'value': 'and'}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'cache_responses'}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': 'in'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'cache'}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '96', 'type': 'subscript', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'cache'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '101', 'type': 'else_clause', 'children': ['102']}; {'id': '102', 'type': 'block', 'children': ['103', '117', '133']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '106', 'type': 'dictionary', 'children': ['107', '112']}, {'id': '107', 'type': 'pair', 'children': ['108', '109']}; {'id': '108', 'type': 'string', 'children': [], 'value': "'X-Api-Key'"}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '112', 'type': 'pair', 'children': ['113', '114']}, {'id': '113', 'type': 'string', 'children': [], 'value': "'X-Api-Secret'"}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'secret'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '120', 'type': 'call', 'children': ['121', '126']}, {'id': '121', 'type': 'attribute', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'session'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '126', 'type': 'argument_list', 'children': ['127', '130']}, {'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'headers'}, {'id': '133', 'type': 'if_statement', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'cache_responses'}, {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'assignment', 'children': ['140', '145']}; {'id': '140', 'type': 'subscript', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'cache'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '146', 'type': 'if_statement', 'children': ['147', '152', '253', '262']}, {'id': '147', 'type': 'comparison_operator', 'children': ['148', '151'], 'value': '=='}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'status_code'}, {'id': '151', 'type': 'integer', 'children': [], 'value': '200'}; {'id': '152', 'type': 'block', 'children': ['153', '157', '165', '200', '210', '251']}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'results'}; {'id': '156', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'json_response'}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'json'}; {'id': '164', 'type': 'argument_list', 'children': []}, {'id': '165', 'type': 'for_statement', 'children': ['166', '167', '168']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'obj'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'json_response'}; {'id': '168', 'type': 'block', 'children': ['169', '178', '184', '193']}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '172', 'type': 'call', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '174', 'type': 'argument_list', 'children': ['175']}, {'id': '175', 'type': 'keyword_argument', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'obj'}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '183']}; {'id': '180', 'type': 'attribute', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'api'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '184', 'type': 'if_statement', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'space'}; {'id': '186', 'type': 'block', 'children': ['187']}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'instance'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'space'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'space'}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'call', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '198', 'type': 'argument_list', 'children': ['199']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'instance'}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'assignment', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'per_page'}, {'id': '203', 'type': 'call', 'children': ['204', '207']}; {'id': '204', 'type': 'attribute', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '207', 'type': 'argument_list', 'children': ['208', '209']}; {'id': '208', 'type': 'string', 'children': [], 'value': "'per_page'"}, {'id': '209', 'type': 'None', 'children': []}; {'id': '210', 'type': 'if_statement', 'children': ['211', '227']}, {'id': '211', 'type': 'parenthesized_expression', 'children': ['212']}; {'id': '212', 'type': 'boolean_operator', 'children': ['213', '221'], 'value': 'and'}, {'id': '213', 'type': 'boolean_operator', 'children': ['214', '217'], 'value': 'and'}; {'id': '214', 'type': 'boolean_operator', 'children': ['215', '216'], 'value': 'and'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'get_all'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'per_page'}, {'id': '217', 'type': 'call', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '219', 'type': 'argument_list', 'children': ['220']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'json_response'}, {'id': '221', 'type': 'comparison_operator', 'children': ['222', '223'], 'value': '=='}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'per_page'}, {'id': '223', 'type': 'call', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '225', 'type': 'argument_list', 'children': ['226']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'json_response'}, {'id': '227', 'type': 'block', 'children': ['228', '234']}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'augmented_assignment', 'children': ['230', '233'], 'value': '+='}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '232', 'type': 'string', 'children': [], 'value': "'page'"}, {'id': '233', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '234', 'type': 'expression_statement', 'children': ['235']}, {'id': '235', 'type': 'assignment', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '237', 'type': 'binary_operator', 'children': ['238', '239'], 'value': '+'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': '_get_json'}, {'id': '243', 'type': 'argument_list', 'children': ['244', '245', '246', '247', '248']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'space'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'rel_path'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'extra_params'}; {'id': '248', 'type': 'keyword_argument', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'get_all'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'get_all'}, {'id': '251', 'type': 'return_statement', 'children': ['252']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '253', 'type': 'elif_clause', 'children': ['254', '259']}; {'id': '254', 'type': 'comparison_operator', 'children': ['255', '258'], 'value': '=='}, {'id': '255', 'type': 'attribute', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'status_code'}; {'id': '258', 'type': 'integer', 'children': [], 'value': '204'}, {'id': '259', 'type': 'block', 'children': ['260']}; {'id': '260', 'type': 'return_statement', 'children': ['261']}, {'id': '261', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '262', 'type': 'else_clause', 'children': ['263']}, {'id': '263', 'type': 'block', 'children': ['264']}; {'id': '264', 'type': 'raise_statement', 'children': ['265']}, {'id': '265', 'type': 'call', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '267', 'type': 'argument_list', 'children': ['268']}; {'id': '268', 'type': 'call', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'string', 'children': [], 'value': '\'Code {0} returned from `{1}`. Response text: "{2}".\''}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '272', 'type': 'argument_list', 'children': ['273', '276', '277']}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'status_code'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '277', 'type': 'attribute', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'text'} | def _get_json(self, model, space=None, rel_path=None, extra_params=None, get_all=None):
if space is None and model not in (Space, Event):
raise Exception(
'In general, `API._get_json` should always '
'be called with a `space` argument.'
)
if not extra_params:
extra_params = {}
extra_params['page'] = extra_params.get('page', 1)
url = '{0}/{1}/{2}.json?{3}'.format(
settings.API_ROOT_PATH,
settings.API_VERSION,
rel_path or model.rel_path,
urllib.urlencode(extra_params),
)
if self.cache_responses and url in self.cache:
response = self.cache[url]
else:
headers = {
'X-Api-Key': self.key,
'X-Api-Secret': self.secret,
}
response = self.session.get(url=url, headers=headers)
if self.cache_responses:
self.cache[url] = response
if response.status_code == 200:
results = []
json_response = response.json()
for obj in json_response:
instance = model(data=obj)
instance.api = self
if space:
instance.space = space
results.append(instance)
per_page = extra_params.get('per_page', None)
if (
get_all
and per_page
and len(json_response)
and per_page == len(json_response)
):
extra_params['page'] += 1
results = results + self._get_json(model, space, rel_path, extra_params, get_all=get_all)
return results
elif response.status_code == 204:
return []
else:
raise Exception(
'Code {0} returned from `{1}`. Response text: "{2}".'.format(
response.status_code,
url,
response.text
)
) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_config'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'app_name'}, {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '9', 'type': 'block', 'children': ['10', '14', '24', '34', '44', '72', '76', '96', '121', '125', '383']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'configure_logging'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '21', 'type': 'argument_list', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'prefix'"}, {'id': '23', 'type': 'string', 'children': [], 'value': "'etc'"}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'verbose'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "'verbose'"}, {'id': '33', 'type': 'False', 'children': []}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': "'location'"}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'passphrase'}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '51', 'type': 'argument_list', 'children': ['52', '53']}; {'id': '52', 'type': 'string', 'children': [], 'value': "'passphrase'"}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'getenv'}, {'id': '57', 'type': 'argument_list', 'children': ['58', '65']}; {'id': '58', 'type': 'binary_operator', 'children': ['59', '60'], 'value': '%'}, {'id': '59', 'type': 'string', 'children': [], 'value': '"%s_SETTINGS_CRYPT_KEY"'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'app_name'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'upper'}; {'id': '64', 'type': 'argument_list', 'children': []}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'getenv'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'string', 'children': [], 'value': '"SETTINGS_CRYPT_KEY"'}, {'id': '71', 'type': 'None', 'children': []}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'confnames'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '76', 'type': 'if_statement', 'children': ['77', '79']}, {'id': '77', 'type': 'not_operator', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'getenv'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '95']}; {'id': '88', 'type': 'binary_operator', 'children': ['89', '90'], 'value': '%'}, {'id': '89', 'type': 'string', 'children': [], 'value': '"%s_SETTINGS_LOCATION"'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'app_name'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'upper'}; {'id': '94', 'type': 'argument_list', 'children': []}, {'id': '95', 'type': 'None', 'children': []}; {'id': '96', 'type': 'if_statement', 'children': ['97', '99']}, {'id': '97', 'type': 'not_operator', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '99', 'type': 'block', 'children': ['100', '110']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'getenv'}, {'id': '107', 'type': 'argument_list', 'children': ['108', '109']}; {'id': '108', 'type': 'string', 'children': [], 'value': '"SETTINGS_LOCATION"'}, {'id': '109', 'type': 'None', 'children': []}; {'id': '110', 'type': 'if_statement', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '112', 'type': 'block', 'children': ['113']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '116', 'type': 'binary_operator', 'children': ['117', '118'], 'value': '%'}, {'id': '117', 'type': 'string', 'children': [], 'value': '"%s/%s"'}; {'id': '118', 'type': 'tuple', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'app_name'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '124', 'type': 'dictionary', 'children': []}, {'id': '125', 'type': 'for_statement', 'children': ['126', '127', '128']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'confname'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'confnames'}; {'id': '128', 'type': 'block', 'children': ['129', '133', '239', '283']}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '132', 'type': 'None', 'children': []}, {'id': '133', 'type': 'if_statement', 'children': ['134', '142']}; {'id': '134', 'type': 'boolean_operator', 'children': ['135', '136'], 'value': 'and'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'string', 'children': [], 'value': "'s3://'"}; {'id': '142', 'type': 'block', 'children': ['143']}, {'id': '143', 'type': 'try_statement', 'children': ['144', '235']}; {'id': '144', 'type': 'block', 'children': ['145', '148', '162']}, {'id': '145', 'type': 'import_statement', 'children': ['146']}; {'id': '146', 'type': 'dotted_name', 'children': ['147']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'boto'}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '154']}; {'id': '150', 'type': 'pattern_list', 'children': ['151', '152', '153']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'bucket_name'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '154', 'type': 'subscript', 'children': ['155', '159']}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'urlparse'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '159', 'type': 'slice', 'children': ['160', '161']}; {'id': '160', 'type': 'colon', 'children': []}, {'id': '161', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '162', 'type': 'try_statement', 'children': ['163', '218']}, {'id': '163', 'type': 'block', 'children': ['164', '172', '181', '189', '198', '206']}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'conn'}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'boto'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'connect_s3'}, {'id': '171', 'type': 'argument_list', 'children': []}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'assignment', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'bucket'}, {'id': '175', 'type': 'call', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'conn'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'get_bucket'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'bucket_name'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'assignment', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'key_name'}; {'id': '184', 'type': 'binary_operator', 'children': ['185', '186'], 'value': '%'}, {'id': '185', 'type': 'string', 'children': [], 'value': "'%s/%s'"}; {'id': '186', 'type': 'tuple', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'confname'}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'assignment', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'bucket'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'get_key'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'key_name'}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'assignment', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '201', 'type': 'call', 'children': ['202', '205']}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'get_contents_as_string'}, {'id': '205', 'type': 'argument_list', 'children': []}; {'id': '206', 'type': 'if_statement', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'verbose'}; {'id': '208', 'type': 'block', 'children': ['209']}, {'id': '209', 'type': 'expression_statement', 'children': ['210']}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'LOGGER'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '214', 'type': 'argument_list', 'children': ['215', '216', '217']}, {'id': '215', 'type': 'string', 'children': [], 'value': '"config loaded from \'s3://%s/%s\'"'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'bucket_name'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'key_name'}; {'id': '218', 'type': 'except_clause', 'children': ['219', '233']}, {'id': '219', 'type': 'as_pattern', 'children': ['220', '231']}; {'id': '220', 'type': 'tuple', 'children': ['221', '226']}, {'id': '221', 'type': 'attribute', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'boto'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'exception'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'NoAuthHandlerFound'}; {'id': '226', 'type': 'attribute', 'children': ['227', '230']}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'boto'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'exception'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'S3ResponseError'}, {'id': '231', 'type': 'as_pattern_target', 'children': ['232']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '233', 'type': 'block', 'children': ['234']}; {'id': '234', 'type': 'pass_statement', 'children': []}, {'id': '235', 'type': 'except_clause', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'ImportError'}, {'id': '237', 'type': 'block', 'children': ['238']}; {'id': '238', 'type': 'pass_statement', 'children': []}, {'id': '239', 'type': 'if_statement', 'children': ['240', '242']}; {'id': '240', 'type': 'not_operator', 'children': ['241']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '242', 'type': 'block', 'children': ['243', '260']}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'assignment', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'confpath'}; {'id': '246', 'type': 'call', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'locate_config'}; {'id': '248', 'type': 'argument_list', 'children': ['249', '250', '251', '254', '257']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'confname'}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'app_name'}, {'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '254', 'type': 'keyword_argument', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '257', 'type': 'keyword_argument', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'verbose'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'verbose'}; {'id': '260', 'type': 'if_statement', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'confpath'}; {'id': '262', 'type': 'block', 'children': ['263']}, {'id': '263', 'type': 'with_statement', 'children': ['264', '274']}; {'id': '264', 'type': 'with_clause', 'children': ['265']}, {'id': '265', 'type': 'with_item', 'children': ['266']}; {'id': '266', 'type': 'as_pattern', 'children': ['267', '272']}, {'id': '267', 'type': 'call', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '269', 'type': 'argument_list', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'confpath'}, {'id': '271', 'type': 'string', 'children': [], 'value': "'rb'"}; {'id': '272', 'type': 'as_pattern_target', 'children': ['273']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'conffile'}; {'id': '274', 'type': 'block', 'children': ['275']}, {'id': '275', 'type': 'expression_statement', 'children': ['276']}; {'id': '276', 'type': 'assignment', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '278', 'type': 'call', 'children': ['279', '282']}, {'id': '279', 'type': 'attribute', 'children': ['280', '281']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'conffile'}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '282', 'type': 'argument_list', 'children': []}, {'id': '283', 'type': 'if_statement', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '285', 'type': 'block', 'children': ['286', '299', '315']}; {'id': '286', 'type': 'if_statement', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'passphrase'}; {'id': '288', 'type': 'block', 'children': ['289']}, {'id': '289', 'type': 'expression_statement', 'children': ['290']}; {'id': '290', 'type': 'assignment', 'children': ['291', '292']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '292', 'type': 'call', 'children': ['293', '296']}, {'id': '293', 'type': 'attribute', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'crypt'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'decrypt'}; {'id': '296', 'type': 'argument_list', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'passphrase'}, {'id': '299', 'type': 'if_statement', 'children': ['300', '305']}; {'id': '300', 'type': 'call', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '302', 'type': 'argument_list', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '304', 'type': 'string', 'children': [], 'value': "'decode'"}, {'id': '305', 'type': 'block', 'children': ['306']}; {'id': '306', 'type': 'expression_statement', 'children': ['307']}, {'id': '307', 'type': 'assignment', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'content'}, {'id': '309', 'type': 'call', 'children': ['310', '313']}; {'id': '310', 'type': 'attribute', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'decode'}, {'id': '313', 'type': 'argument_list', 'children': ['314']}; {'id': '314', 'type': 'string', 'children': [], 'value': "'utf-8'"}, {'id': '315', 'type': 'for_statement', 'children': ['316', '317', '323']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '317', 'type': 'call', 'children': ['318', '321']}; {'id': '318', 'type': 'attribute', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '321', 'type': 'argument_list', 'children': ['322']}; {'id': '322', 'type': 'string', 'children': [], 'value': "'\\n'"}, {'id': '323', 'type': 'block', 'children': ['324']}; {'id': '324', 'type': 'if_statement', 'children': ['325', '329', '347']}, {'id': '325', 'type': 'not_operator', 'children': ['326']}; {'id': '326', 'type': 'attribute', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '329', 'type': 'ERROR', 'children': ['330', '346']}; {'id': '330', 'type': 'call', 'children': ['331', '332']}, {'id': '331', 'type': 'string', 'children': [], 'value': "'\n look = re.match(r'"}; {'id': '332', 'type': 'argument_list', 'children': ['333', '334']}, {'id': '333', 'type': 'ERROR', 'children': [], 'value': '\\'}; {'id': '334', 'type': 'binary_operator', 'children': ['335', '336', '337'], 'value': '+'}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'w'}; {'id': '336', 'type': 'ERROR', 'children': []}, {'id': '337', 'type': 'binary_operator', 'children': ['338', '342', '345'], 'value': '*'}; {'id': '338', 'type': 'binary_operator', 'children': ['339', '340', '341'], 'value': '*'}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '340', 'type': 'ERROR', 'children': []}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '342', 'type': 'ERROR', 'children': ['343']}, {'id': '343', 'type': 'tuple', 'children': ['344']}; {'id': '344', 'type': 'ERROR', 'children': []}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'look'}, {'id': '347', 'type': 'block', 'children': ['348']}; {'id': '348', 'type': 'try_statement', 'children': ['349', '379']}, {'id': '349', 'type': 'block', 'children': ['350']}; {'id': '350', 'type': 'expression_statement', 'children': ['351']}, {'id': '351', 'type': 'call', 'children': ['352', '355']}; {'id': '352', 'type': 'attribute', 'children': ['353', '354']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '355', 'type': 'argument_list', 'children': ['356']}; {'id': '356', 'type': 'dictionary', 'children': ['357']}, {'id': '357', 'type': 'pair', 'children': ['358', '368']}; {'id': '358', 'type': 'call', 'children': ['359', '367']}, {'id': '359', 'type': 'attribute', 'children': ['360', '366']}; {'id': '360', 'type': 'call', 'children': ['361', '364']}, {'id': '361', 'type': 'attribute', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'look'}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '364', 'type': 'argument_list', 'children': ['365']}, {'id': '365', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'upper'}, {'id': '367', 'type': 'argument_list', 'children': []}; {'id': '368', 'type': 'call', 'children': ['369', '370']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'eval'}; {'id': '370', 'type': 'argument_list', 'children': ['371', '377', '378']}, {'id': '371', 'type': 'call', 'children': ['372', '375']}; {'id': '372', 'type': 'attribute', 'children': ['373', '374']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'look'}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '375', 'type': 'argument_list', 'children': ['376']}; {'id': '376', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '377', 'type': 'dictionary', 'children': []}; {'id': '378', 'type': 'dictionary', 'children': []}, {'id': '379', 'type': 'except_clause', 'children': ['380', '381']}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '381', 'type': 'block', 'children': ['382']}; {'id': '382', 'type': 'raise_statement', 'children': []}, {'id': '383', 'type': 'return_statement', 'children': ['384']} | def load_config(app_name, *args, **kwargs):
configure_logging()
prefix = kwargs.get('prefix', 'etc')
verbose = kwargs.get('verbose', False)
location = kwargs.get('location', None)
passphrase = kwargs.get('passphrase',
os.getenv("%s_SETTINGS_CRYPT_KEY" % app_name.upper(),
os.getenv("SETTINGS_CRYPT_KEY", None)))
confnames = args
if not location:
location = os.getenv("%s_SETTINGS_LOCATION" % app_name.upper(), None)
if not location:
location = os.getenv("SETTINGS_LOCATION", None)
if location:
location = "%s/%s" % (location, app_name)
config = {}
for confname in confnames:
content = None
if location and location.startswith('s3://'):
try:
import boto
_, bucket_name, prefix = urlparse(location)[:3]
try:
conn = boto.connect_s3()
bucket = conn.get_bucket(bucket_name)
key_name = '%s/%s' % (prefix, confname)
key = bucket.get_key(key_name)
content = key.get_contents_as_string()
if verbose:
LOGGER.info("config loaded from 's3://%s/%s'",
bucket_name, key_name)
except (boto.exception.NoAuthHandlerFound,
boto.exception.S3ResponseError) as _:
pass
except ImportError:
pass
if not content:
confpath = locate_config(
confname, app_name, location=location,
prefix=prefix, verbose=verbose)
if confpath:
with open(confpath, 'rb') as conffile:
content = conffile.read()
if content:
if passphrase:
content = crypt.decrypt(content, passphrase)
if hasattr(content, 'decode'):
content = content.decode('utf-8')
for line in content.split('\n'):
if not line.startswith('
look = re.match(r'(\w+)\s*=\s*(.*)', line)
if look:
try:
config.update({look.group(1).upper():
eval(look.group(2), {}, {})})
except Exception:
raise
return config |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'predict'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'tree'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '8', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'dist'}, {'id': '11', 'type': 'False', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '17']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '17', 'type': 'while_statement', 'children': ['18', '19']}; {'id': '18', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '19', 'type': 'block', 'children': ['20', '26', '213', '223', '267', '287', '294', '349', '397']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'tree'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '34', '76']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '33'], 'value': '=='}; {'id': '28', 'type': 'subscript', 'children': ['29', '32']}, {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '31', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '5'}, {'id': '33', 'type': 'string', 'children': [], 'value': '"c"'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'if_statement', 'children': ['36', '49', '62']}; {'id': '36', 'type': 'comparison_operator', 'children': ['37', '44'], 'value': '<='}, {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '39', 'type': 'subscript', 'children': ['40', '43']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '42', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '43', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '44', 'type': 'subscript', 'children': ['45', '48']}, {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '47', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '55']}; {'id': '52', 'type': 'pattern_list', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '55', 'type': 'expression_list', 'children': ['56', '57']}; {'id': '56', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '57', 'type': 'subscript', 'children': ['58', '61']}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '60', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '61', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '62', 'type': 'else_clause', 'children': ['63']}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '69']}; {'id': '66', 'type': 'pattern_list', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '69', 'type': 'expression_list', 'children': ['70', '71']}; {'id': '70', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '71', 'type': 'subscript', 'children': ['72', '75']}; {'id': '72', 'type': 'subscript', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '76', 'type': 'else_clause', 'children': ['77']}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'if_statement', 'children': ['79', '92', '105', '132']}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '87'], 'value': 'in'}; {'id': '80', 'type': 'subscript', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '82', 'type': 'subscript', 'children': ['83', '86']}, {'id': '83', 'type': 'subscript', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '87', 'type': 'subscript', 'children': ['88', '91']}; {'id': '88', 'type': 'subscript', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '98']}, {'id': '95', 'type': 'pattern_list', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '98', 'type': 'expression_list', 'children': ['99', '100']}, {'id': '99', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '100', 'type': 'subscript', 'children': ['101', '104']}, {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '103', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '104', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '105', 'type': 'elif_clause', 'children': ['106', '119']}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '114'], 'value': 'in'}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '109', 'type': 'subscript', 'children': ['110', '113']}; {'id': '110', 'type': 'subscript', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '112', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '113', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '114', 'type': 'subscript', 'children': ['115', '118']}, {'id': '115', 'type': 'subscript', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '117', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '118', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '119', 'type': 'block', 'children': ['120']}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'assignment', 'children': ['122', '125']}; {'id': '122', 'type': 'pattern_list', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '125', 'type': 'expression_list', 'children': ['126', '127']}; {'id': '126', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '127', 'type': 'subscript', 'children': ['128', '131']}; {'id': '128', 'type': 'subscript', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '130', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '131', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '132', 'type': 'else_clause', 'children': ['133']}, {'id': '133', 'type': 'block', 'children': ['134', '156']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'node_id'}, {'id': '137', 'type': 'binary_operator', 'children': ['138', '148'], 'value': '+'}; {'id': '138', 'type': 'binary_operator', 'children': ['139', '147'], 'value': '+'}, {'id': '139', 'type': 'call', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'subscript', 'children': ['143', '146']}, {'id': '143', 'type': 'subscript', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '145', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '146', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '147', 'type': 'string', 'children': [], 'value': '","'}; {'id': '148', 'type': 'call', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '150', 'type': 'argument_list', 'children': ['151']}, {'id': '151', 'type': 'subscript', 'children': ['152', '155']}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '154', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '155', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '161']}; {'id': '158', 'type': 'pattern_list', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '161', 'type': 'expression_list', 'children': ['162', '163']}; {'id': '162', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '163', 'type': 'list', 'children': ['164'], 'value': '[[0, 0, 0, {k: nodes[0][3].get(k, 0) + nodes[1][3].get(k, 0) for k in\n set(nodes[0][3]) | set(nodes[1][3])}]]'}; {'id': '164', 'type': 'list', 'children': ['165', '166', '167', '168'], 'value': '[0, 0, 0, {k: nodes[0][3].get(k, 0) + nodes[1][3].get(k, 0) for k in\n set(nodes[0][3]) | set(nodes[1][3])}]'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '166', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '167', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '168', 'type': 'dictionary_comprehension', 'children': ['169', '194']}, {'id': '169', 'type': 'pair', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '183'], 'value': '+'}; {'id': '172', 'type': 'call', 'children': ['173', '180']}, {'id': '173', 'type': 'attribute', 'children': ['174', '179']}; {'id': '174', 'type': 'subscript', 'children': ['175', '178']}, {'id': '175', 'type': 'subscript', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '177', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '178', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '180', 'type': 'argument_list', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '182', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '183', 'type': 'call', 'children': ['184', '191']}; {'id': '184', 'type': 'attribute', 'children': ['185', '190']}, {'id': '185', 'type': 'subscript', 'children': ['186', '189']}; {'id': '186', 'type': 'subscript', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '188', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '189', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '191', 'type': 'argument_list', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '193', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '194', 'type': 'for_in_clause', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '196', 'type': 'binary_operator', 'children': ['197', '205'], 'value': '|'}, {'id': '197', 'type': 'call', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '199', 'type': 'argument_list', 'children': ['200']}; {'id': '200', 'type': 'subscript', 'children': ['201', '204']}, {'id': '201', 'type': 'subscript', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '203', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '204', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '205', 'type': 'call', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'subscript', 'children': ['209', '212']}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '211', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '212', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '213', 'type': 'if_statement', 'children': ['214', '221']}; {'id': '214', 'type': 'comparison_operator', 'children': ['215', '216'], 'value': 'in'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'node_id'}; {'id': '216', 'type': 'call', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'tree'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '220', 'type': 'argument_list', 'children': []}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'continue_statement', 'children': []}, {'id': '223', 'type': 'if_statement', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'dist'}, {'id': '225', 'type': 'block', 'children': ['226', '241']}; {'id': '226', 'type': 'expression_statement', 'children': ['227']}, {'id': '227', 'type': 'assignment', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'suma'}, {'id': '229', 'type': 'call', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '231', 'type': 'argument_list', 'children': ['232']}; {'id': '232', 'type': 'call', 'children': ['233', '240']}, {'id': '233', 'type': 'attribute', 'children': ['234', '239']}; {'id': '234', 'type': 'subscript', 'children': ['235', '238']}, {'id': '235', 'type': 'subscript', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '238', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '240', 'type': 'argument_list', 'children': []}, {'id': '241', 'type': 'return_statement', 'children': ['242']}; {'id': '242', 'type': 'call', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'Counter'}; {'id': '244', 'type': 'argument_list', 'children': ['245']}, {'id': '245', 'type': 'dictionary_comprehension', 'children': ['246', '254']}; {'id': '246', 'type': 'pair', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '248', 'type': 'binary_operator', 'children': ['249', '250'], 'value': '/'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '250', 'type': 'call', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '252', 'type': 'argument_list', 'children': ['253']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'suma'}; {'id': '254', 'type': 'for_in_clause', 'children': ['255', '258']}, {'id': '255', 'type': 'pattern_list', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '258', 'type': 'call', 'children': ['259', '266']}, {'id': '259', 'type': 'attribute', 'children': ['260', '265']}; {'id': '260', 'type': 'subscript', 'children': ['261', '264']}, {'id': '261', 'type': 'subscript', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '264', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'iteritems'}; {'id': '266', 'type': 'argument_list', 'children': []}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'assignment', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'prediction'}; {'id': '270', 'type': 'call', 'children': ['271', '272']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '272', 'type': 'argument_list', 'children': ['273', '278']}, {'id': '273', 'type': 'subscript', 'children': ['274', '277']}; {'id': '274', 'type': 'subscript', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '277', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '278', 'type': 'keyword_argument', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '280', 'type': 'attribute', 'children': ['281', '286']}, {'id': '281', 'type': 'subscript', 'children': ['282', '285']}; {'id': '282', 'type': 'subscript', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '285', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '287', 'type': 'if_statement', 'children': ['288', '291']}; {'id': '288', 'type': 'comparison_operator', 'children': ['289', '290'], 'value': '=='}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '290', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '291', 'type': 'block', 'children': ['292']}; {'id': '292', 'type': 'return_statement', 'children': ['293']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'prediction'}; {'id': '294', 'type': 'expression_statement', 'children': ['295']}, {'id': '295', 'type': 'assignment', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'probs'}, {'id': '297', 'type': 'call', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '299', 'type': 'argument_list', 'children': ['300', '340', '346']}; {'id': '300', 'type': 'call', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '302', 'type': 'argument_list', 'children': ['303', '312']}, {'id': '303', 'type': 'call', 'children': ['304', '311']}; {'id': '304', 'type': 'attribute', 'children': ['305', '310']}, {'id': '305', 'type': 'subscript', 'children': ['306', '309']}; {'id': '306', 'type': 'subscript', 'children': ['307', '308']}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '309', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '311', 'type': 'argument_list', 'children': []}; {'id': '312', 'type': 'call', 'children': ['313', '316']}, {'id': '313', 'type': 'attribute', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'true_divide'}; {'id': '316', 'type': 'argument_list', 'children': ['317', '326']}, {'id': '317', 'type': 'call', 'children': ['318', '325']}; {'id': '318', 'type': 'attribute', 'children': ['319', '324']}, {'id': '319', 'type': 'subscript', 'children': ['320', '323']}; {'id': '320', 'type': 'subscript', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '323', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '325', 'type': 'argument_list', 'children': []}; {'id': '326', 'type': 'call', 'children': ['327', '330']}, {'id': '327', 'type': 'attribute', 'children': ['328', '329']}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '330', 'type': 'argument_list', 'children': ['331']}, {'id': '331', 'type': 'call', 'children': ['332', '339']}; {'id': '332', 'type': 'attribute', 'children': ['333', '338']}, {'id': '333', 'type': 'subscript', 'children': ['334', '337']}; {'id': '334', 'type': 'subscript', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '337', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '339', 'type': 'argument_list', 'children': []}; {'id': '340', 'type': 'keyword_argument', 'children': ['341', '342']}, {'id': '341', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '342', 'type': 'call', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'itemgetter'}; {'id': '344', 'type': 'argument_list', 'children': ['345']}, {'id': '345', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '346', 'type': 'keyword_argument', 'children': ['347', '348']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '348', 'type': 'True', 'children': []}, {'id': '349', 'type': 'if_statement', 'children': ['350', '353', '376']}; {'id': '350', 'type': 'comparison_operator', 'children': ['351', '352'], 'value': '=='}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'prediction'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '353', 'type': 'block', 'children': ['354']}; {'id': '354', 'type': 'expression_statement', 'children': ['355']}, {'id': '355', 'type': 'assignment', 'children': ['356', '357']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'margin'}, {'id': '357', 'type': 'conditional_expression', 'children': ['358', '369', '375'], 'value': 'if'}; {'id': '358', 'type': 'binary_operator', 'children': ['359', '364'], 'value': '-'}, {'id': '359', 'type': 'subscript', 'children': ['360', '363']}; {'id': '360', 'type': 'subscript', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'probs'}; {'id': '362', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '363', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '364', 'type': 'subscript', 'children': ['365', '368']}, {'id': '365', 'type': 'subscript', 'children': ['366', '367']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'probs'}, {'id': '367', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '368', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '369', 'type': 'comparison_operator', 'children': ['370', '374'], 'value': '>'}; {'id': '370', 'type': 'call', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '372', 'type': 'argument_list', 'children': ['373']}, {'id': '373', 'type': 'identifier', 'children': [], 'value': 'probs'}; {'id': '374', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '375', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '376', 'type': 'else_clause', 'children': ['377']}, {'id': '377', 'type': 'block', 'children': ['378']}; {'id': '378', 'type': 'expression_statement', 'children': ['379']}, {'id': '379', 'type': 'assignment', 'children': ['380', '381']}; {'id': '380', 'type': 'identifier', 'children': [], 'value': 'margin'}, {'id': '381', 'type': 'binary_operator', 'children': ['382', '392'], 'value': '-'}; {'id': '382', 'type': 'call', 'children': ['383', '389']}, {'id': '383', 'type': 'attribute', 'children': ['384', '388']}; {'id': '384', 'type': 'call', 'children': ['385', '386']}, {'id': '385', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '386', 'type': 'argument_list', 'children': ['387']}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'probs'}; {'id': '388', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '389', 'type': 'argument_list', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '391', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '392', 'type': 'subscript', 'children': ['393', '396']}, {'id': '393', 'type': 'subscript', 'children': ['394', '395']}; {'id': '394', 'type': 'identifier', 'children': [], 'value': 'probs'}, {'id': '395', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '396', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '397', 'type': 'return_statement', 'children': ['398']}; {'id': '398', 'type': 'expression_list', 'children': ['399', '400']}, {'id': '399', 'type': 'identifier', 'children': [], 'value': 'node_id'} | def predict(tree, x, y=[], dist=False):
node_id = 1
while 1:
nodes = tree[node_id]
if nodes[0][5] == "c":
if x[nodes[0][1]] <= nodes[0][2]:
index, node_id = 0, nodes[0][0]
else:
index, node_id = 1, nodes[1][0]
else:
if x[nodes[0][1]] in nodes[0][2]:
index, node_id = 0, nodes[0][0]
elif x[nodes[1][1]] in nodes[1][2]:
index, node_id = 1, nodes[1][0]
else:
node_id = str(nodes[0][0]) + "," + str(nodes[1][0])
index, nodes = 0, [[0, 0, 0, {k: nodes[0][3].get(k, 0) + nodes[1][3].get(k, 0) for k in
set(nodes[0][3]) | set(nodes[1][3])}]]
if node_id in tree.keys():
continue
if dist:
suma = sum(nodes[index][3].values())
return Counter({k: v / float(suma) for k, v in nodes[index][3].iteritems()})
prediction = max(nodes[index][3], key=nodes[index][3].get)
if y == []:
return prediction
probs = sorted(
zip(nodes[index][3].keys(), np.true_divide(nodes[index][3].values(), np.sum(nodes[index][3].values()))),
key=itemgetter(1), reverse=True)
if prediction == y:
margin = probs[0][1] - probs[1][1] if len(probs) > 1 else 1
else:
margin = dict(probs).get(y, 0) - probs[0][1]
return node_id, margin |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pay_with_account_credit_cards'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Optional'}; {'id': '8', 'type': 'type_parameter', 'children': ['9']}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'Transaction'}, {'id': '11', 'type': 'block', 'children': ['12', '22']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'invoice-payment-started'"}, {'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}; {'id': '22', 'type': 'with_statement', 'children': ['23', '30']}, {'id': '23', 'type': 'with_clause', 'children': ['24']}; {'id': '24', 'type': 'with_item', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'transaction'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'atomic'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31', '48', '66', '78', '91', '104', '110', '122', '146', '155', '289']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'invoice'}; {'id': '34', 'type': 'call', 'children': ['35', '44']}, {'id': '35', 'type': 'attribute', 'children': ['36', '43']}; {'id': '36', 'type': 'call', 'children': ['37', '42']}, {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'Invoice'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'select_for_update'}; {'id': '42', 'type': 'argument_list', 'children': []}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'pk'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}; {'id': '48', 'type': 'if_statement', 'children': ['49', '53']}, {'id': '49', 'type': 'not_operator', 'children': ['50']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'invoice'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'in_payable_state'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'raise_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'PreconditionError'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': "'Cannot pay invoice with status {}.'"}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'invoice'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'status'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'due'}, {'id': '69', 'type': 'call', 'children': ['70', '77']}; {'id': '70', 'type': 'attribute', 'children': ['71', '76']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'invoice'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'due'}, {'id': '75', 'type': 'argument_list', 'children': []}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'monies'}, {'id': '77', 'type': 'argument_list', 'children': []}; {'id': '78', 'type': 'if_statement', 'children': ['79', '85']}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '84'], 'value': '=='}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'due'}; {'id': '84', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '85', 'type': 'block', 'children': ['86']}; {'id': '86', 'type': 'raise_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'PreconditionError'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'string', 'children': [], 'value': "'Cannot pay empty invoice.'"}, {'id': '91', 'type': 'if_statement', 'children': ['92', '98']}; {'id': '92', 'type': 'comparison_operator', 'children': ['93', '97'], 'value': '>'}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'due'}, {'id': '97', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '98', 'type': 'block', 'children': ['99']}, {'id': '99', 'type': 'raise_statement', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'PreconditionError'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'string', 'children': [], 'value': "'Cannot pay invoice with more than one currency.'"}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'amount'}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'due'}, {'id': '109', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '110', 'type': 'if_statement', 'children': ['111', '116']}, {'id': '111', 'type': 'comparison_operator', 'children': ['112', '115'], 'value': '<='}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'amount'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'amount'}, {'id': '115', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '116', 'type': 'block', 'children': ['117']}, {'id': '117', 'type': 'raise_statement', 'children': ['118']}; {'id': '118', 'type': 'call', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'PreconditionError'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'string', 'children': [], 'value': "'Cannot pay invoice with non-positive amount.'"}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'valid_credit_cards'}, {'id': '125', 'type': 'call', 'children': ['126', '144']}; {'id': '126', 'type': 'attribute', 'children': ['127', '143']}, {'id': '127', 'type': 'call', 'children': ['128', '137']}; {'id': '128', 'type': 'attribute', 'children': ['129', '136']}, {'id': '129', 'type': 'call', 'children': ['130', '135']}; {'id': '130', 'type': 'attribute', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'CreditCard'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'valid'}, {'id': '135', 'type': 'argument_list', 'children': []}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'keyword_argument', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'invoice'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'account'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'order_by'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'string', 'children': [], 'value': "'status'"}; {'id': '146', 'type': 'if_statement', 'children': ['147', '149']}, {'id': '147', 'type': 'not_operator', 'children': ['148']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'valid_credit_cards'}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'raise_statement', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'PreconditionError'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'string', 'children': [], 'value': "'No valid credit card on account.'"}, {'id': '155', 'type': 'for_statement', 'children': ['156', '157', '158']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'credit_card'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'valid_credit_cards'}; {'id': '158', 'type': 'block', 'children': ['159']}, {'id': '159', 'type': 'try_statement', 'children': ['160', '267']}; {'id': '160', 'type': 'block', 'children': ['161', '185', '222']}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '166']}, {'id': '163', 'type': 'pattern_list', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'success'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'payment_psp_object'}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'psp'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'charge_credit_card'}; {'id': '170', 'type': 'argument_list', 'children': ['171', '176', '179']}, {'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'credit_card_psp_object'}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'credit_card'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'psp_object'}; {'id': '176', 'type': 'keyword_argument', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'amount'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'amount'}, {'id': '179', 'type': 'keyword_argument', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'client_ref'}, {'id': '181', 'type': 'call', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'assignment', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'payment'}; {'id': '188', 'type': 'call', 'children': ['189', '194']}, {'id': '189', 'type': 'attribute', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'Transaction'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'objects'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'create'}; {'id': '194', 'type': 'argument_list', 'children': ['195', '200', '203', '206', '209', '214', '219']}, {'id': '195', 'type': 'keyword_argument', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'account'}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'invoice'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'account'}; {'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'invoice'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'invoice'}, {'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'amount'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'amount'}; {'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'success'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'success'}, {'id': '209', 'type': 'keyword_argument', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'payment_method'}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'credit_card'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '214', 'type': 'keyword_argument', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'credit_card_number'}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'credit_card'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '219', 'type': 'keyword_argument', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'psp_object'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'payment_psp_object'}; {'id': '222', 'type': 'if_statement', 'children': ['223', '224', '252']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'success'}; {'id': '224', 'type': 'block', 'children': ['225', '231', '237', '250']}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'call', 'children': ['227', '230']}, {'id': '227', 'type': 'attribute', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'invoice'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'pay'}; {'id': '230', 'type': 'argument_list', 'children': []}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'call', 'children': ['233', '236']}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'invoice'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'save'}; {'id': '236', 'type': 'argument_list', 'children': []}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '242']}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '242', 'type': 'argument_list', 'children': ['243', '244', '247']}, {'id': '243', 'type': 'string', 'children': [], 'value': "'invoice-payment-success'"}; {'id': '244', 'type': 'keyword_argument', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'invoice'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}, {'id': '247', 'type': 'keyword_argument', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'payment'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'payment'}; {'id': '250', 'type': 'return_statement', 'children': ['251']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'payment'}; {'id': '252', 'type': 'else_clause', 'children': ['253']}, {'id': '253', 'type': 'block', 'children': ['254']}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'call', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '259', 'type': 'argument_list', 'children': ['260', '261', '264']}; {'id': '260', 'type': 'string', 'children': [], 'value': "'invoice-payment-failure'"}, {'id': '261', 'type': 'keyword_argument', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'invoice'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}; {'id': '264', 'type': 'keyword_argument', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'payment'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'payment'}, {'id': '267', 'type': 'except_clause', 'children': ['268', '272']}; {'id': '268', 'type': 'as_pattern', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'Exception'}; {'id': '270', 'type': 'as_pattern_target', 'children': ['271']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '272', 'type': 'block', 'children': ['273']}, {'id': '273', 'type': 'expression_statement', 'children': ['274']}; {'id': '274', 'type': 'call', 'children': ['275', '278']}, {'id': '275', 'type': 'attribute', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '278', 'type': 'argument_list', 'children': ['279', '280', '283', '286']}, {'id': '279', 'type': 'string', 'children': [], 'value': "'invoice-payment-error'"}; {'id': '280', 'type': 'keyword_argument', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'invoice_id'}, {'id': '283', 'type': 'keyword_argument', 'children': ['284', '285']}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'credit_card'}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'credit_card'}; {'id': '286', 'type': 'keyword_argument', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'exc_info'}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '289', 'type': 'return_statement', 'children': ['290']} | def pay_with_account_credit_cards(invoice_id) -> Optional[Transaction]:
logger.debug('invoice-payment-started', invoice_id=invoice_id)
with transaction.atomic():
invoice = Invoice.objects.select_for_update().get(pk=invoice_id)
if not invoice.in_payable_state:
raise PreconditionError('Cannot pay invoice with status {}.'.format(invoice.status))
due = invoice.due().monies()
if len(due) == 0:
raise PreconditionError('Cannot pay empty invoice.')
if len(due) > 1:
raise PreconditionError('Cannot pay invoice with more than one currency.')
amount = due[0]
if amount.amount <= 0:
raise PreconditionError('Cannot pay invoice with non-positive amount.')
valid_credit_cards = CreditCard.objects.valid().filter(account=invoice.account).order_by('status')
if not valid_credit_cards:
raise PreconditionError('No valid credit card on account.')
for credit_card in valid_credit_cards:
try:
success, payment_psp_object = psp.charge_credit_card(
credit_card_psp_object=credit_card.psp_object,
amount=amount,
client_ref=str(invoice_id))
payment = Transaction.objects.create(
account=invoice.account,
invoice=invoice,
amount=amount,
success=success,
payment_method=credit_card.type,
credit_card_number=credit_card.number,
psp_object=payment_psp_object)
if success:
invoice.pay()
invoice.save()
logger.info('invoice-payment-success', invoice=invoice_id, payment=payment)
return payment
else:
logger.info('invoice-payment-failure', invoice=invoice_id, payment=payment)
except Exception as e:
logger.error('invoice-payment-error', invoice_id=invoice_id, credit_card=credit_card, exc_info=e)
return None |
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Not sure if some nuances are missed in\n the other versions.\n '''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'old_sys_path'}, {'id': '11', 'type': 'subscript', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '15', 'type': 'slice', 'children': ['16']}; {'id': '16', 'type': 'colon', 'children': []}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'dirpath'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'os'}; 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{'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '203', 'type': 'argument_list', 'children': ['204', '205']}; {'id': '204', 'type': 'string', 'children': [], 'value': "r'^[A-Z_]+$'"}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '206', 'type': 'block', 'children': ['207']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'call', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'scan_django_settings'}; {'id': '210', 'type': 'argument_list', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'settings_imports'}, {'id': '213', 'type': 'for_statement', 'children': ['214', '215', '221']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '215', 'type': 'call', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '217', 'type': 'argument_list', 'children': ['218', '219', '220']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'settings'}, {'id': '219', 'type': 'string', 'children': [], 'value': "'INSTALLED_APPS'"}; {'id': '220', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '221', 'type': 'block', 'children': ['222']}; {'id': '222', 'type': 'if_statement', 'children': ['223', '234', '257']}, {'id': '223', 'type': 'boolean_operator', 'children': ['224', '229'], 'value': 'and'}; {'id': '224', 'type': 'call', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '226', 'type': 'argument_list', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '228', 'type': 'string', 'children': [], 'value': "'__file__'"}, {'id': '229', 'type': 'call', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '231', 'type': 'argument_list', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '233', 'type': 'string', 'children': [], 'value': "'__file__'"}; {'id': '234', 'type': 'block', 'children': ['235', '250']}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'assignment', 'children': ['237', '240']}, {'id': '237', 'type': 'pattern_list', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'imp'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '240', 'type': 'call', 'children': ['241', '244']}, {'id': '241', 'type': 'attribute', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'utils'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'import_path_from_file'}; {'id': '244', 'type': 'argument_list', 'children': ['245']}, {'id': '245', 'type': 'call', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '247', 'type': 'argument_list', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '249', 'type': 'string', 'children': [], 'value': "'__file__'"}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'call', 'children': ['252', '255']}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '255', 'type': 'argument_list', 'children': ['256']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'imp'}, {'id': '257', 'type': 'else_clause', 'children': ['258']}; {'id': '258', 'type': 'block', 'children': ['259']}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'call', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '266', 'type': 'except_clause', 'children': ['267', '271']}, {'id': '267', 'type': 'as_pattern', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '269', 'type': 'as_pattern_target', 'children': ['270']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '271', 'type': 'block', 'children': ['272', '280', '290']}; {'id': '272', 'type': 'expression_statement', 'children': ['273']}, {'id': '273', 'type': 'call', 'children': ['274', '277']}; {'id': '274', 'type': 'attribute', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '277', 'type': 'argument_list', 'children': ['278', '279']}; {'id': '278', 'type': 'string', 'children': [], 'value': "'Could not load Django settings: %s'"}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '280', 'type': 'expression_statement', 'children': ['281']}, {'id': '281', 'type': 'call', 'children': ['282', '285']}; {'id': '282', 'type': 'attribute', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '284', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '285', 'type': 'argument_list', 'children': ['286', '287']}; {'id': '286', 'type': 'string', 'children': [], 'value': "''"}, {'id': '287', 'type': 'keyword_argument', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'exc_info'}, {'id': '289', 'type': 'True', 'children': []}; {'id': '290', 'type': 'return_statement', 'children': []}, {'id': '291', 'type': 'if_statement', 'children': ['292', '297']}; {'id': '292', 'type': 'boolean_operator', 'children': ['293', '295'], 'value': 'or'}, {'id': '293', 'type': 'not_operator', 'children': ['294']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}, {'id': '295', 'type': 'not_operator', 'children': ['296']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'settings_imports'}, {'id': '297', 'type': 'block', 'children': ['298']}; {'id': '298', 'type': 'expression_statement', 'children': ['299']}, {'id': '299', 'type': 'call', 'children': ['300', '303']}; {'id': '300', 'type': 'attribute', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '303', 'type': 'argument_list', 'children': ['304']}; {'id': '304', 'type': 'string', 'children': [], 'value': "'Got empty settings values from Django settings.'"}, {'id': '305', 'type': 'try_statement', 'children': ['306', '398']}; {'id': '306', 'type': 'block', 'children': ['307', '318', '340', '348']}, {'id': '307', 'type': 'import_from_statement', 'children': ['308', '312', '314', '316']}; {'id': '308', 'type': 'dotted_name', 'children': ['309', '310', '311']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'django'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'apps'}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'registry'}; {'id': '312', 'type': 'dotted_name', 'children': ['313']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '314', 'type': 'dotted_name', 'children': ['315']}, {'id': '315', 'type': 'identifier', 'children': [], 'value': 'Apps'}; {'id': '316', 'type': 'dotted_name', 'children': ['317']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'AppRegistryNotReady'}; {'id': '318', 'type': 'if_statement', 'children': ['319', '323', '331']}, {'id': '319', 'type': 'not_operator', 'children': ['320']}; {'id': '320', 'type': 'attribute', 'children': ['321', '322']}, {'id': '321', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'apps_ready'}, {'id': '323', 'type': 'block', 'children': ['324']}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'call', 'children': ['326', '329']}; {'id': '326', 'type': 'attribute', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '328', 'type': 'identifier', 'children': [], 'value': 'populate'}, {'id': '329', 'type': 'argument_list', 'children': ['330']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}, {'id': '331', 'type': 'else_clause', 'children': ['332']}; {'id': '332', 'type': 'block', 'children': ['333']}, {'id': '333', 'type': 'expression_statement', 'children': ['334']}; {'id': '334', 'type': 'assignment', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '336', 'type': 'call', 'children': ['337', '338']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'Apps'}; {'id': '338', 'type': 'argument_list', 'children': ['339']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'assignment', 'children': ['342', '343']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '343', 'type': 'call', 'children': ['344', '347']}; {'id': '344', 'type': 'attribute', 'children': ['345', '346']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '347', 'type': 'argument_list', 'children': []}; {'id': '348', 'type': 'while_statement', 'children': ['349', '350']}, {'id': '349', 'type': 'True', 'children': []}; {'id': '350', 'type': 'block', 'children': ['351', '397']}, {'id': '351', 'type': 'try_statement', 'children': ['352', '370']}; {'id': '352', 'type': 'block', 'children': ['353']}, {'id': '353', 'type': 'for_statement', 'children': ['354', '355', '360']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '355', 'type': 'call', 'children': ['356', '359']}; {'id': '356', 'type': 'attribute', 'children': ['357', '358']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'get_app_configs'}, {'id': '359', 'type': 'argument_list', 'children': []}; {'id': '360', 'type': 'block', 'children': ['361']}, {'id': '361', 'type': 'expression_statement', 'children': ['362']}; {'id': '362', 'type': 'call', 'children': ['363', '366']}, {'id': '363', 'type': 'attribute', 'children': ['364', '365']}; {'id': '364', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '366', 'type': 'argument_list', 'children': ['367']}, {'id': '367', 'type': 'attribute', 'children': ['368', '369']}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'app'}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '370', 'type': 'except_clause', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'AppRegistryNotReady'}; {'id': '372', 'type': 'block', 'children': ['373', '389', '396']}, {'id': '373', 'type': 'if_statement', 'children': ['374', '383']}; {'id': '374', 'type': 'comparison_operator', 'children': ['375', '382'], 'value': '>'}, {'id': '375', 'type': 'binary_operator', 'children': ['376', '381'], 'value': '-'}; {'id': '376', 'type': 'call', 'children': ['377', '380']}, {'id': '377', 'type': 'attribute', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '380', 'type': 'argument_list', 'children': []}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '382', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '383', 'type': 'block', 'children': ['384']}; {'id': '384', 'type': 'raise_statement', 'children': ['385']}, {'id': '385', 'type': 'call', 'children': ['386', '387']}; {'id': '386', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '387', 'type': 'argument_list', 'children': ['388']}; {'id': '388', 'type': 'string', 'children': [], 'value': "'Bail out of waiting for Django'"}, {'id': '389', 'type': 'expression_statement', 'children': ['390']}; {'id': '390', 'type': 'call', 'children': ['391', '394']}, {'id': '391', 'type': 'attribute', 'children': ['392', '393']}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '393', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '394', 'type': 'argument_list', 'children': ['395']}, {'id': '395', 'type': 'string', 'children': [], 'value': "'Waiting for apps to load...'"}; {'id': '396', 'type': 'continue_statement', 'children': []}, {'id': '397', 'type': 'break_statement', 'children': []}; {'id': '398', 'type': 'except_clause', 'children': ['399', '403']}, {'id': '399', 'type': 'as_pattern', 'children': ['400', '401']}; {'id': '400', 'type': 'identifier', 'children': [], 'value': 'Exception'}, {'id': '401', 'type': 'as_pattern_target', 'children': ['402']}; {'id': '402', 'type': 'identifier', 'children': [], 'value': 'e'}, {'id': '403', 'type': 'block', 'children': ['404']}; {'id': '404', 'type': 'expression_statement', 'children': ['405']}, {'id': '405', 'type': 'call', 'children': ['406', '409']}; {'id': '406', 'type': 'attribute', 'children': ['407', '408']}, {'id': '407', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '409', 'type': 'argument_list', 'children': ['410']}; {'id': '410', 'type': 'call', 'children': ['411', '414']}, {'id': '411', 'type': 'attribute', 'children': ['412', '413']}; {'id': '412', 'type': 'string', 'children': [], 'value': "'Could not use AppConfig: {}'"}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '414', 'type': 'argument_list', 'children': ['415']}, {'id': '415', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '416', 'type': 'expression_statement', 'children': ['417']}, {'id': '417', 'type': 'assignment', 'children': ['418', '424']}; {'id': '418', 'type': 'subscript', 'children': ['419', '422']}, {'id': '419', 'type': 'attribute', 'children': ['420', '421']}; {'id': '420', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '421', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '422', 'type': 'slice', 'children': ['423']}, {'id': '423', 'type': 'colon', 'children': []}; {'id': '424', 'type': 'identifier', 'children': [], 'value': 'old_sys_path'}, {'id': '425', 'type': 'expression_statement', 'children': ['426']}; {'id': '426', 'type': 'call', 'children': ['427', '430']}, {'id': '427', 'type': 'attribute', 'children': ['428', '429']}; {'id': '428', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '429', 'type': 'identifier', 'children': [], 'value': 'chdir'}; {'id': '430', 'type': 'argument_list', 'children': ['431']}, {'id': '431', 'type': 'identifier', 'children': [], 'value': 'cwd'}; {'id': '432', 'type': 'for_statement', 'children': ['433', '434', '435']}, {'id': '433', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '434', 'type': 'identifier', 'children': [], 'value': 'settings_imports'}, {'id': '435', 'type': 'block', 'children': ['436', '445']}; {'id': '436', 'type': 'expression_statement', 'children': ['437']}, {'id': '437', 'type': 'assignment', 'children': ['438', '439']}; {'id': '438', 'type': 'identifier', 'children': [], 'value': 'need_scan'}, {'id': '439', 'type': 'call', 'children': ['440', '443']}; {'id': '440', 'type': 'attribute', 'children': ['441', '442']}, {'id': '441', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '442', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '443', 'type': 'argument_list', 'children': ['444']}; {'id': '444', 'type': 'identifier', 'children': [], 'value': '_filescan_modules'}, {'id': '445', 'type': 'expression_statement', 'children': ['446']}; {'id': '446', 'type': 'yield', 'children': ['447']}, {'id': '447', 'type': 'tuple', 'children': ['448', '449', '450']}; {'id': '448', 'type': 'string', 'children': [], 'value': "'django'"}, {'id': '449', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '450', 'type': 'conditional_expression', 'children': ['451', '452', '453'], 'value': 'if'}, {'id': '451', 'type': 'identifier', 'children': [], 'value': 'project_path'}; {'id': '452', 'type': 'identifier', 'children': [], 'value': 'need_scan'}, {'id': '453', 'type': 'None', 'children': []}; {'id': '454', 'type': 'for_statement', 'children': ['455', '456', '457']}, {'id': '455', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '456', 'type': 'identifier', 'children': [], 'value': 'installed_apps'}, {'id': '457', 'type': 'block', 'children': ['458', '467']}; {'id': '458', 'type': 'expression_statement', 'children': ['459']}, {'id': '459', 'type': 'assignment', 'children': ['460', '461']}; {'id': '460', 'type': 'identifier', 'children': [], 'value': 'need_scan'}, {'id': '461', 'type': 'call', 'children': ['462', '465']}; {'id': '462', 'type': 'attribute', 'children': ['463', '464']}, {'id': '463', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '464', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '465', 'type': 'argument_list', 'children': ['466']}; {'id': '466', 'type': 'identifier', 'children': [], 'value': 'project'}, {'id': '467', 'type': 'expression_statement', 'children': ['468']}; {'id': '468', 'type': 'yield', 'children': ['469']}, {'id': '469', 'type': 'tuple', 'children': ['470', '471', '472']}; {'id': '470', 'type': 'string', 'children': [], 'value': "'django'"}, {'id': '471', 'type': 'identifier', 'children': [], 'value': 'app'}; {'id': '472', 'type': 'conditional_expression', 'children': ['473', '474', '475'], 'value': 'if'}, {'id': '473', 'type': 'identifier', 'children': [], 'value': 'project_path'}; {'id': '474', 'type': 'identifier', 'children': [], 'value': 'need_scan'}, {'id': '475', 'type': 'None', 'children': []} | def handle_django_settings(filename):
'''Attempts to load a Django project and get package dependencies from
settings.
Tested using Django 1.4 and 1.8. Not sure if some nuances are missed in
the other versions.
'''
old_sys_path = sys.path[:]
dirpath = os.path.dirname(filename)
project = os.path.basename(dirpath)
cwd = os.getcwd()
project_path = os.path.normpath(os.path.join(dirpath, '..'))
if project_path not in sys.path:
sys.path.insert(0, project_path)
os.chdir(project_path)
project_settings = '{}.settings'.format(project)
os.environ['DJANGO_SETTINGS_MODULE'] = project_settings
try:
import django
django.setup = lambda: False
except ImportError:
log.error('Found Django settings, but Django is not installed.')
return
log.warn('Loading Django Settings (Using {}): {}'
.format(django.get_version(), filename))
from django.conf import LazySettings
installed_apps = set()
settings_imports = set()
try:
settings = LazySettings()
settings._setup()
for k, v in vars(settings._wrapped).items():
if k not in _excluded_settings and re.match(r'^[A-Z_]+$', k):
scan_django_settings(v, settings_imports)
for app in getattr(settings, 'INSTALLED_APPS', []):
if hasattr(app, '__file__') and getattr(app, '__file__'):
imp, _ = utils.import_path_from_file(getattr(app, '__file__'))
installed_apps.add(imp)
else:
installed_apps.add(app)
except Exception as e:
log.error('Could not load Django settings: %s', e)
log.debug('', exc_info=True)
return
if not installed_apps or not settings_imports:
log.error('Got empty settings values from Django settings.')
try:
from django.apps.registry import apps, Apps, AppRegistryNotReady
if not apps.apps_ready:
apps.populate(installed_apps)
else:
apps = Apps(installed_apps)
start = time.time()
while True:
try:
for app in apps.get_app_configs():
installed_apps.add(app.name)
except AppRegistryNotReady:
if time.time() - start > 10:
raise Exception('Bail out of waiting for Django')
log.debug('Waiting for apps to load...')
continue
break
except Exception as e:
log.debug('Could not use AppConfig: {}'.format(e))
sys.path[:] = old_sys_path
os.chdir(cwd)
for item in settings_imports:
need_scan = item.startswith(_filescan_modules)
yield ('django', item, project_path if need_scan else None)
for app in installed_apps:
need_scan = app.startswith(project)
yield ('django', app, project_path if need_scan else None) |
Subsets and Splits