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{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_json'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'py_obj'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'json_path'},{'id': '6', 'type': 'block', 'children': ['7']},{'id': '7', 'type': 'with_statement', 'children': ['8', '21']},{'id': '8', 'type': 'with_clause', 'children': ['9']},{'id': '9', 'type': 'with_item', 'children': ['10']},{'id': '10', 'type': 'as_pattern', 'children': ['11', '19']},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15', '16']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'json_path'},{'id': '15', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '18', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '19', 'type': 'as_pattern_target', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'serialize_to_normalized_pretty_json'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'py_obj'} | def save_json(py_obj, json_path):
with open(json_path, 'w', encoding='utf-8') as f:
f.write(serialize_to_normalized_pretty_json(py_obj)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'serialize_to_normalized_pretty_json'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'py_obj'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '11', 'type': 'argument_list', 'children': ['12', '13', '16', '19']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'py_obj'},{'id': '13', 'type': 'keyword_argument', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '15', 'type': 'True', 'children': []},{'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '18', 'type': 'integer', 'children': [], 'value': '2'},{'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'ToJsonCompatibleTypes'} | def serialize_to_normalized_pretty_json(py_obj):
return json.dumps(py_obj, sort_keys=True, indent=2, cls=ToJsonCompatibleTypes) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'serialize_to_normalized_compact_json'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'py_obj'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '11', 'type': 'argument_list', 'children': ['12', '13', '16', '21']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'py_obj'},{'id': '13', 'type': 'keyword_argument', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '15', 'type': 'True', 'children': []},{'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'separators'},{'id': '18', 'type': 'tuple', 'children': ['19', '20']},{'id': '19', 'type': 'string', 'children': [], 'value': "','"},{'id': '20', 'type': 'string', 'children': [], 'value': "':'"},{'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'ToJsonCompatibleTypes'} | def serialize_to_normalized_compact_json(py_obj):
return json.dumps(
py_obj, sort_keys=True, separators=(',', ':'), cls=ToJsonCompatibleTypes
) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'topological_sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'unsorted_dict'},{'id': '5', 'type': 'block', 'children': ['6', '10', '16', '20', '28', '79']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '9', 'type': 'list', 'children': [], 'value': '[]'},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted_set'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '19', 'type': 'True', 'children': []},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'unconnected_dict'},{'id': '23', 'type': 'call', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'unsorted_dict'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '27', 'type': 'argument_list', 'children': []},{'id': '28', 'type': 'while_statement', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '30', 'type': 'block', 'children': ['31', '35']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '34', 'type': 'False', 'children': []},{'id': '35', 'type': 'for_statement', 'children': ['36', '39', '47']},{'id': '36', 'type': 'pattern_list', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'obsoletes_pid'},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'unconnected_dict'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '46', 'type': 'argument_list', 'children': []},{'id': '47', 'type': 'block', 'children': ['48']},{'id': '48', 'type': 'if_statement', 'children': ['49', '56']},{'id': '49', 'type': 'boolean_operator', 'children': ['50', '53'], 'value': 'or'},{'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': 'is'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'obsoletes_pid'},{'id': '52', 'type': 'None', 'children': []},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': 'in'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'obsoletes_pid'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'sorted_set'},{'id': '56', 'type': 'block', 'children': ['57', '61', '68', '75']},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '60', 'type': 'True', 'children': []},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'sorted_set'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '75', 'type': 'delete_statement', 'children': ['76']},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'unconnected_dict'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'pid'},{'id': '79', 'type': 'return_statement', 'children': ['80']},{'id': '80', 'type': 'expression_list', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'unconnected_dict'} | def topological_sort(unsorted_dict):
sorted_list = []
sorted_set = set()
found = True
unconnected_dict = unsorted_dict.copy()
while found:
found = False
for pid, obsoletes_pid in list(unconnected_dict.items()):
if obsoletes_pid is None or obsoletes_pid in sorted_set:
found = True
sorted_list.append(pid)
sorted_set.add(pid)
del unconnected_dict[pid]
return sorted_list, unconnected_dict |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_elements_by_child_values'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'obj_pyxb'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'child_name_list'},{'id': '6', 'type': 'block', 'children': ['7']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'call', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'obj_pyxb'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'keyword_argument', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '15', 'type': 'lambda', 'children': ['16', '18']},{'id': '16', 'type': 'lambda_parameters', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '18', 'type': 'list_comprehension', 'children': ['19', '27']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'get_auto'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '24', 'type': 'argument_list', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '27', 'type': 'for_in_clause', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'child_name_list'} | def sort_elements_by_child_values(obj_pyxb, child_name_list):
obj_pyxb.sort(key=lambda x: [get_auto(getattr(x, n)) for n in child_name_list]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_field_values'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '10', '13']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'maxvalues'},{'id': '8', 'type': 'unary_operator', 'children': ['9'], 'value': '-'},{'id': '9', 'type': 'integer', 'children': [], 'value': '1'},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '12', 'type': 'True', 'children': []},{'id': '13', 'type': 'dictionary_splat_pattern', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'query_dict'},{'id': '15', 'type': 'block', 'children': ['16', '24', '59', '69', '77', '87']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'param_dict'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'query_dict'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'param_dict'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'dictionary', 'children': ['31', '34', '37', '40', '46', '49']},{'id': '31', 'type': 'pair', 'children': ['32', '33']},{'id': '32', 'type': 'string', 'children': [], 'value': "'rows'"},{'id': '33', 'type': 'string', 'children': [], 'value': "'0'"},{'id': '34', 'type': 'pair', 'children': ['35', '36']},{'id': '35', 'type': 'string', 'children': [], 'value': "'facet'"},{'id': '36', 'type': 'string', 'children': [], 'value': "'true'"},{'id': '37', 'type': 'pair', 'children': ['38', '39']},{'id': '38', 'type': 'string', 'children': [], 'value': "'facet.field'"},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '40', 'type': 'pair', 'children': ['41', '42']},{'id': '41', 'type': 'string', 'children': [], 'value': "'facet.limit'"},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'maxvalues'},{'id': '46', 'type': 'pair', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': "'facet.zeros'"},{'id': '48', 'type': 'string', 'children': [], 'value': "'false'"},{'id': '49', 'type': 'pair', 'children': ['50', '51']},{'id': '50', 'type': 'string', 'children': [], 'value': "'facet.sort'"},{'id': '51', 'type': 'call', 'children': ['52', '58']},{'id': '52', 'type': 'attribute', 'children': ['53', '57']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '58', 'type': 'argument_list', 'children': []},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'resp_dict'},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '65', 'type': 'identifier', 'children': [], 'value': '_post_query'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'dictionary_splat', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'param_dict'},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'result_dict'},{'id': '72', 'type': 'subscript', 'children': ['73', '76']},{'id': '73', 'type': 'subscript', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'resp_dict'},{'id': '75', 'type': 'string', 'children': [], 'value': "'facet_counts'"},{'id': '76', 'type': 'string', 'children': [], 'value': "'facet_fields'"},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '82']},{'id': '79', 'type': 'subscript', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'result_dict'},{'id': '81', 'type': 'string', 'children': [], 'value': "'numFound'"},{'id': '82', 'type': 'subscript', 'children': ['83', '86']},{'id': '83', 'type': 'subscript', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'resp_dict'},{'id': '85', 'type': 'string', 'children': [], 'value': "'response'"},{'id': '86', 'type': 'string', 'children': [], 'value': "'numFound'"},{'id': '87', 'type': 'return_statement', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'result_dict'} | def get_field_values(self, name, maxvalues=-1, sort=True, **query_dict):
param_dict = query_dict.copy()
param_dict.update(
{
'rows': '0',
'facet': 'true',
'facet.field': name,
'facet.limit': str(maxvalues),
'facet.zeros': 'false',
'facet.sort': str(sort).lower(),
}
)
resp_dict = self._post_query(**param_dict)
result_dict = resp_dict['facet_counts']['facet_fields']
result_dict['numFound'] = resp_dict['response']['numFound']
return result_dict |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'bin'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'bins'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'maxX'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'minX'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '15', '28', '41', '65']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'string', 'children': [], 'value': "'''\n bin signal x using 'binsN' bin. If minX, maxX are None, they default to the full\n range of the signal. If they are not None, everything above maxX gets assigned to\n binsN-1 and everything below minX gets assigned to 0, this is effectively the same\n as clipping x before passing it to 'bin'\n input:\n -----\n x: signal to be binned, some sort of iterable\n bins: int, number of bins\n iterable, bin edges\n maxX: clips data above maxX\n minX: clips data below maxX\n output:\n ------\n binnedX: x after being binned\n bins: bins used for binning.\n if input 'bins' is already an iterable it just returns the\n same iterable\n example:\n bin(x, 10)\n entropy)\n binsN = 10\n percentiles = list(np.arange(0, 100.1, 100/binsN))\n bins = np.percentile(x, percentiles)\n bin(x, bins)\n '''"},{'id': '15', 'type': 'if_statement', 'children': ['16', '19']},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'maxX'},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'block', 'children': 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'67', 'type': 'call', 'children': ['68', '81']},{'id': '68', 'type': 'attribute', 'children': ['69', '80']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'digitize'},{'id': '73', 'type': 'argument_list', 'children': ['74', '79']},{'id': '74', 'type': 'call', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'ravel'},{'id': '78', 'type': 'argument_list', 'children': []},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'bins'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'bins'} | def bin(x, bins, maxX=None, minX=None):
'''
bin signal x using 'binsN' bin. If minX, maxX are None, they default to the full
range of the signal. If they are not None, everything above maxX gets assigned to
binsN-1 and everything below minX gets assigned to 0, this is effectively the same
as clipping x before passing it to 'bin'
input:
-----
x: signal to be binned, some sort of iterable
bins: int, number of bins
iterable, bin edges
maxX: clips data above maxX
minX: clips data below maxX
output:
------
binnedX: x after being binned
bins: bins used for binning.
if input 'bins' is already an iterable it just returns the
same iterable
example:
bin(x, 10)
entropy)
binsN = 10
percentiles = list(np.arange(0, 100.1, 100/binsN))
bins = np.percentile(x, percentiles)
bin(x, bins)
'''
if maxX is None:
maxX = x.max()
if minX is None:
minX = x.min()
if not np.iterable(bins):
bins = np.linspace(minX, maxX+1e-5, bins+1)
return np.digitize(x.ravel(), bins).reshape(x.shape), bins |
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'130']},{'id': '129', 'type': 'string', 'children': [], 'value': "'UpdateItem'"},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'payload'} | def update_item(self, table_name, key_dict,
condition_expression=None,
update_expression=None,
expression_attribute_names=None,
expression_attribute_values=None,
return_consumed_capacity=None,
return_item_collection_metrics=None,
return_values=None):
payload = {'TableName': table_name,
'Key': utils.marshall(key_dict),
'UpdateExpression': update_expression}
if condition_expression:
payload['ConditionExpression'] = condition_expression
if expression_attribute_names:
payload['ExpressionAttributeNames'] = expression_attribute_names
if expression_attribute_values:
payload['ExpressionAttributeValues'] = \
utils.marshall(expression_attribute_values)
if return_consumed_capacity:
_validate_return_consumed_capacity(return_consumed_capacity)
payload['ReturnConsumedCapacity'] = return_consumed_capacity
if return_item_collection_metrics:
_validate_return_item_collection_metrics(
return_item_collection_metrics)
payload['ReturnItemCollectionMetrics'] = \
return_item_collection_metrics
if return_values:
_validate_return_values(return_values)
payload['ReturnValues'] = return_values
return self.execute('UpdateItem', payload) |
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'74', 'type': 'identifier', 'children': [], 'value': 'key_condition_expression'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '81']},{'id': '78', 'type': 'subscript', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '80', 'type': 'string', 'children': [], 'value': "'KeyConditionExpression'"},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'key_condition_expression'},{'id': '82', 'type': 'if_statement', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'filter_expression'},{'id': '84', 'type': 'block', 'children': ['85']},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '90']},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '89', 'type': 'string', 'children': [], 'value': "'FilterExpression'"},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'filter_expression'},{'id': '91', 'type': 'if_statement', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'expression_attribute_names'},{'id': '93', 'type': 'block', 'children': ['94']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '99']},{'id': '96', 'type': 'subscript', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '98', 'type': 'string', 'children': [], 'value': "'ExpressionAttributeNames'"},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'expression_attribute_names'},{'id': '100', 'type': 'if_statement', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'expression_attribute_values'},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '108', '109']},{'id': '105', 'type': 'subscript', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '107', 'type': 'string', 'children': [], 'value': "'ExpressionAttributeValues'"},{'id': '108', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'marshall'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'expression_attribute_values'},{'id': '115', 'type': 'if_statement', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'projection_expression'},{'id': '117', 'type': 'block', 'children': ['118']},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '123']},{'id': '120', 'type': 'subscript', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '122', 'type': 'string', 'children': [], 'value': "'ProjectionExpression'"},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'projection_expression'},{'id': '124', 'type': 'if_statement', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'select'},{'id': '126', 'type': 'block', 'children': ['127', '132']},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': '_validate_select'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'select'},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '137']},{'id': '134', 'type': 'subscript', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '136', 'type': 'string', 'children': [], 'value': "'Select'"},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'select'},{'id': '138', 'type': 'if_statement', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'exclusive_start_key'},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'expression_statement', 'children': ['142']},{'id': '142', 'type': 'assignment', 'children': ['143', '146']},{'id': '143', 'type': 'subscript', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '145', 'type': 'string', 'children': [], 'value': "'ExclusiveStartKey'"},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'utils'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'marshall'},{'id': '150', 'type': 'argument_list', 'children': ['151']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'exclusive_start_key'},{'id': '152', 'type': 'if_statement', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '154', 'type': 'block', 'children': ['155']},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'assignment', 'children': ['157', '160']},{'id': '157', 'type': 'subscript', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '159', 'type': 'string', 'children': [], 'value': "'Limit'"},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '161', 'type': 'if_statement', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'return_consumed_capacity'},{'id': '163', 'type': 'block', 'children': ['164', '169']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'call', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': '_validate_return_consumed_capacity'},{'id': '167', 'type': 'argument_list', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'return_consumed_capacity'},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '174']},{'id': '171', 'type': 'subscript', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '173', 'type': 'string', 'children': [], 'value': "'ReturnConsumedCapacity'"},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'return_consumed_capacity'},{'id': '175', 'type': 'return_statement', 'children': ['176']},{'id': '176', 'type': 'call', 'children': ['177', '180']},{'id': '177', 'type': 'attribute', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '180', 'type': 'argument_list', 'children': ['181', '182']},{'id': '181', 'type': 'string', 'children': [], 'value': "'Query'"},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'payload'} | def query(self, table_name,
index_name=None,
consistent_read=None,
key_condition_expression=None,
filter_expression=None,
expression_attribute_names=None,
expression_attribute_values=None,
projection_expression=None,
select=None,
exclusive_start_key=None,
limit=None,
scan_index_forward=True,
return_consumed_capacity=None):
payload = {'TableName': table_name,
'ScanIndexForward': scan_index_forward}
if index_name:
payload['IndexName'] = index_name
if consistent_read is not None:
payload['ConsistentRead'] = consistent_read
if key_condition_expression:
payload['KeyConditionExpression'] = key_condition_expression
if filter_expression:
payload['FilterExpression'] = filter_expression
if expression_attribute_names:
payload['ExpressionAttributeNames'] = expression_attribute_names
if expression_attribute_values:
payload['ExpressionAttributeValues'] = \
utils.marshall(expression_attribute_values)
if projection_expression:
payload['ProjectionExpression'] = projection_expression
if select:
_validate_select(select)
payload['Select'] = select
if exclusive_start_key:
payload['ExclusiveStartKey'] = utils.marshall(exclusive_start_key)
if limit:
payload['Limit'] = limit
if return_consumed_capacity:
_validate_return_consumed_capacity(return_consumed_capacity)
payload['ReturnConsumedCapacity'] = return_consumed_capacity
return self.execute('Query', payload) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_gae_versions'},{'id': '3', 'type': 'parameters', 'children': []},{'id': '4', 'type': 'block', 'children': ['5', '14', '20', '34', '38', '80']},{'id': '5', 'type': 'expression_statement', 'children': ['6']},{'id': '6', 'type': 'assignment', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '8', 'type': 'call', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'SDK_RELEASES_URL'},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'raise_for_status'},{'id': '19', 'type': 'argument_list', 'children': []},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'releases'},{'id': '23', 'type': 'call', 'children': ['24', '31']},{'id': '24', 'type': 'attribute', 'children': ['25', '30']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '29', 'type': 'argument_list', 'children': []},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33']},{'id': '32', 'type': 'string', 'children': [], 'value': "'items'"},{'id': '33', 'type': 'dictionary', 'children': []},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'versions_and_urls'},{'id': '37', 'type': 'list', 'children': [], 'value': '[]'},{'id': '38', 'type': 'for_statement', 'children': ['39', '40', '41']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'release'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'releases'},{'id': '41', 'type': 'block', 'children': ['42', '53', '58']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'PYTHON_RELEASE_RE'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'subscript', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'release'},{'id': '52', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '53', 'type': 'if_statement', 'children': ['54', '56']},{'id': '54', 'type': 'not_operator', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'continue_statement', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'versions_and_urls'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'tuple', 'children': ['65', '77']},{'id': '65', 'type': 'list_comprehension', 'children': ['66', '70']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '70', 'type': 'for_in_clause', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '76', 'type': 'argument_list', 'children': []},{'id': '77', 'type': 'subscript', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'release'},{'id': '79', 'type': 'string', 'children': [], 'value': "'mediaLink'"},{'id': '80', 'type': 'return_statement', 'children': ['81']},{'id': '81', 'type': 'call', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '83', 'type': 'argument_list', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'versions_and_urls'},{'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '87', 'type': 'lambda', 'children': ['88', '90']},{'id': '88', 'type': 'lambda_parameters', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '90', 'type': 'subscript', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '92', 'type': 'integer', 'children': [], 'value': '0'} | def get_gae_versions():
r = requests.get(SDK_RELEASES_URL)
r.raise_for_status()
releases = r.json().get('items', {})
versions_and_urls = []
for release in releases:
match = PYTHON_RELEASE_RE.match(release['name'])
if not match:
continue
versions_and_urls.append(
([int(x) for x in match.groups()], release['mediaLink']))
return sorted(versions_and_urls, key=lambda x: x[0]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12', '20']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_parse_options'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'generic_type', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '9', 'type': 'type_parameter', 'children': ['10']},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '12', 'type': 'type', 'children': ['13']},{'id': '13', 'type': 'generic_type', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'Dict'},{'id': '15', 'type': 'type_parameter', 'children': ['16', '18']},{'id': '16', 'type': 'type', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '18', 'type': 'type', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'try_statement', 'children': ['22', '39']},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'return_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '26', 'type': 'generator_expression', 'children': ['27', '36']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33']},{'id': '32', 'type': 'string', 'children': [], 'value': "'='"},{'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'maxsplit'},{'id': '35', 'type': 'integer', 'children': [], 'value': '1'},{'id': '36', 'type': 'for_in_clause', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'options'},{'id': '39', 'type': 'except_clause', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '41', 'type': 'block', 'children': ['42']},{'id': '42', 'type': 'raise_statement', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'ArgumentError'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'string', 'children': [], 'value': "f'Option must be in format <key>=<value>, got: {options}'"} | def _parse_options(options: List[str]) -> Dict[str, str]:
try:
return dict(i.split('=', maxsplit=1) for i in options)
except ValueError:
raise ArgumentError(
f'Option must be in format <key>=<value>, got: {options}') |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'collapse'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'raw'},{'id': '6', 'type': 'block', 'children': ['7', '14', '18', '22', '211', '218']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'call', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'logger_ts'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'string', 'children': [], 'value': '"enter collapse"'},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '17', 'type': 'dictionary', 'children': []},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': '_dsn'},{'id': '21', 'type': 'string', 'children': [], 'value': '""'},{'id': '22', 'type': 'try_statement', 'children': ['23', '183']},{'id': '23', 'type': 'block', 'children': ['24', '32', '149']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': '_pc'},{'id': '27', 'type': 'subscript', 'children': ['28', '31']},{'id': '28', 'type': 'subscript', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '30', 'type': 'integer', 'children': [], 'value': '0'},{'id': '31', 'type': 'string', 'children': [], 'value': '"mode"'},{'id': '32', 'type': 'for_statement', 'children': ['33', '34', '35']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '35', 'type': 'block', 'children': ['36', '42', '46', '50', '139']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '39', 'type': 'subscript', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '41', 'type': 'string', 'children': [], 'value': "'dataSetName'"},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': '_dsn'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': '_current'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '50', 'type': 'if_statement', 'children': ['51', '54']},{'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'not'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '53', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '54', 'type': 'block', 'children': ['55', '67', '77', '89']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'logger_ts'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'string', 'children': [], 'value': '"collapsing: {}"'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'string', 'children': [], 'value': '"collapsing: {}"'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '82']},{'id': '79', 'type': 'pattern_list', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '81', 'type': 'identifier', 'children': [], 'value': '_current'},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': '_collapse_root'},{'id': '84', 'type': 'argument_list', 'children': ['85', '86', '87', '88']},{'id': '85', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '86', 'type': 'identifier', 'children': [], 'value': '_current'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '88', 'type': 'identifier', 'children': [], 'value': '_pc'},{'id': '89', 'type': 'try_statement', 'children': ['90', '122']},{'id': '90', 'type': 'block', 'children': ['91', '103']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '98']},{'id': '93', 'type': 'subscript', 'children': ['94', '97']},{'id': '94', 'type': 'subscript', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '97', 'type': 'string', 'children': [], 'value': '"paleoData"'},{'id': '98', 'type': 'subscript', 'children': ['99', '102']},{'id': '99', 'type': 'subscript', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'raw'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '102', 'type': 'string', 'children': [], 'value': '"paleoData"'},{'id': '103', 'type': 'if_statement', 'children': ['104', '109']},{'id': '104', 'type': 'comparison_operator', 'children': ['105', '106'], 'value': 'in'},{'id': '105', 'type': 'string', 'children': [], 'value': '"chronData"'},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'raw'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '109', 'type': 'block', 'children': ['110']},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'assignment', 'children': ['112', '117']},{'id': '112', 'type': 'subscript', 'children': ['113', '116']},{'id': '113', 'type': 'subscript', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '116', 'type': 'string', 'children': [], 'value': '"chronData"'},{'id': '117', 'type': 'subscript', 'children': ['118', '121']},{'id': '118', 'type': 'subscript', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'raw'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '121', 'type': 'string', 'children': [], 'value': '"chronData"'},{'id': '122', 'type': 'except_clause', 'children': ['123', '127']},{'id': '123', 'type': 'as_pattern', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '125', 'type': 'as_pattern_target', 'children': ['126']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '131', 'type': 'argument_list', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'string', 'children': [], 'value': '"collapse: Could not collapse an object the dataset: {}, {}"'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '136', 'type': 'argument_list', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '139', 'type': 'expression_statement', 'children': ['140']},{'id': '140', 'type': 'assignment', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': '_collapse_pc'},{'id': '144', 'type': 'argument_list', 'children': ['145', '146', '147', '148']},{'id': '145', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '146', 'type': 'identifier', 'children': [], 'value': '_current'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'dsn'},{'id': '148', 'type': 'identifier', 'children': [], 'value': '_pc'},{'id': '149', 'type': 'if_statement', 'children': ['150', '156', '168']},{'id': '150', 'type': 'comparison_operator', 'children': ['151', '155'], 'value': '=='},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '155', 'type': 'integer', 'children': [], 'value': '1'},{'id': '156', 'type': 'block', 'children': ['157', '163']},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'assignment', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '160', 'type': 'subscript', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '162', 'type': 'identifier', 'children': [], 'value': '_dsn'},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'string', 'children': [], 'value': '"Created LiPD data: 1 dataset"'},{'id': '168', 'type': 'else_clause', 'children': ['169']},{'id': '169', 'type': 'block', 'children': ['170']},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'string', 'children': [], 'value': '"Created LiPD data: {} datasets"'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'call', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '181', 'type': 'argument_list', 'children': ['182']},{'id': '182', 'type': 'identifier', 'children': [], 'value': '_master'},{'id': '183', 'type': 'except_clause', 'children': ['184', '188']},{'id': '184', 'type': 'as_pattern', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '186', 'type': 'as_pattern_target', 'children': ['187']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '188', 'type': 'block', 'children': ['189', '199']},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'call', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '192', 'type': 'argument_list', 'children': ['193']},{'id': '193', 'type': 'call', 'children': ['194', '197']},{'id': '194', 'type': 'attribute', 'children': ['195', '196']},{'id': '195', 'type': 'string', 'children': [], 'value': '"Error: Unable to collapse time series, {}"'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '199', 'type': 'expression_statement', 'children': ['200']},{'id': '200', 'type': 'call', 'children': ['201', '204']},{'id': '201', 'type': 'attribute', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'logger_ts'},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '204', 'type': 'argument_list', 'children': ['205']},{'id': '205', 'type': 'call', 'children': ['206', '209']},{'id': '206', 'type': 'attribute', 'children': ['207', '208']},{'id': '207', 'type': 'string', 'children': [], 'value': '"collapse: Exception: {}"'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '209', 'type': 'argument_list', 'children': ['210']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'call', 'children': ['213', '216']},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'logger_ts'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '216', 'type': 'argument_list', 'children': ['217']},{'id': '217', 'type': 'string', 'children': [], 'value': '"exit collapse"'},{'id': '218', 'type': 'return_statement', 'children': ['219']},{'id': '219', 'type': 'identifier', 'children': [], 'value': '_master'} | def collapse(l, raw):
logger_ts.info("enter collapse")
_master = {}
_dsn = ""
try:
_pc = l[0]["mode"]
for entry in l:
dsn = entry['dataSetName']
_dsn = dsn
_current = entry
if dsn not in _master:
logger_ts.info("collapsing: {}".format(dsn))
print("collapsing: {}".format(dsn))
_master, _current = _collapse_root(_master, _current, dsn, _pc)
try:
_master[dsn]["paleoData"] = raw[dsn]["paleoData"]
if "chronData" in raw[dsn]:
_master[dsn]["chronData"] = raw[dsn]["chronData"]
except KeyError as e:
print("collapse: Could not collapse an object the dataset: {}, {}".format(dsn, e))
_master = _collapse_pc(_master, _current, dsn, _pc)
if len(_master) == 1:
_master = _master[_dsn]
print("Created LiPD data: 1 dataset")
else:
print("Created LiPD data: {} datasets".format(len(_master)))
except Exception as e:
print("Error: Unable to collapse time series, {}".format(e))
logger_ts.error("collapse: Exception: {}".format(e))
logger_ts.info("exit collapse")
return _master |
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Pass time series into the function."'},{'id': '23', 'type': 'else_clause', 'children': ['24']},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'try_statement', 'children': ['26', '66']},{'id': '26', 'type': 'block', 'children': ['27', '37', '51', '59']},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': '_raw'},{'id': '30', 'type': 'subscript', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': '_timeseries_data'},{'id': '32', 'type': 'subscript', 'children': ['33', '36']},{'id': '33', 'type': 'subscript', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'ts'},{'id': '35', 'type': 'integer', 'children': [], 'value': '0'},{'id': '36', 'type': 'string', 'children': [], 'value': '"time_id"'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'mode_ts'},{'id': '43', 'type': 'argument_list', 'children': ['44', '45', '48']},{'id': '44', 'type': 'string', 'children': [], 'value': '"collapse"'},{'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'mode'},{'id': '47', 'type': 'string', 'children': [], 'value': '""'},{'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'ts'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'ts'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': '_d'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'collapse'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'ts'},{'id': '58', 'type': 'identifier', 'children': [], 'value': '_raw'},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': '_d'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'rm_empty_fields'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': '_d'},{'id': '66', 'type': 'except_clause', 'children': ['67', '71']},{'id': '67', 'type': 'as_pattern', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '69', 'type': 'as_pattern_target', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '71', 'type': 'block', 'children': ['72', '82']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'string', 'children': [], 'value': '"Error: Unable to collapse the time series: {}"'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'logger_start'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'string', 'children': [], 'value': '"collapseTs: unable to collapse the time series: {}"'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '94', 'type': 'return_statement', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': '_d'} | def collapseTs(ts=None):
global _timeseries_data
_d = {}
if not ts:
print("Error: Time series data not provided. Pass time series into the function.")
else:
try:
_raw = _timeseries_data[ts[0]["time_id"]]
print(mode_ts("collapse", mode="", ts=ts))
_d = collapse(ts, _raw)
_d = rm_empty_fields(_d)
except Exception as e:
print("Error: Unable to collapse the time series: {}".format(e))
logger_start.error("collapseTs: unable to collapse the time series: {}".format(e))
return _d |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'display_results'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'detailed'},{'id': '7', 'type': 'False', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '18', '92']},{'id': '9', 'type': 'if_statement', 'children': ['10', '12']},{'id': '10', 'type': 'not_operator', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'detailed'},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'string', 'children': [], 'value': "'FILENAME......................................... STATUS..........'"},{'id': '18', 'type': 'for_statement', 'children': ['19', '20', '21']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'try_statement', 'children': ['23', '64']},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'if_statement', 'children': ['25', '26', '47']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'detailed'},{'id': '26', 'type': 'block', 'children': ['27', '39']},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'string', 'children': [], 'value': '"\\n{}"'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'subscript', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '38', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'create_detailed_results'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '47', 'type': 'else_clause', 'children': ['48']},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'string', 'children': [], 'value': '"{:<50}{}"'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '57', 'type': 'argument_list', 'children': ['58', '61']},{'id': '58', 'type': 'subscript', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '60', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'entry'},{'id': '63', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '64', 'type': 'except_clause', 'children': ['65', '69']},{'id': '65', 'type': 'as_pattern', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '67', 'type': 'as_pattern_target', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '69', 'type': 'block', 'children': ['70', '82']},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'logger_validator_api'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'string', 'children': [], 'value': '"display_results: Exception: {}"'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'string', 'children': [], 'value': '"Error: display_results: {}"'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '92', 'type': 'return_statement', 'children': []} | def display_results(results, detailed=False):
if not detailed:
print('FILENAME......................................... STATUS..........')
for entry in results:
try:
if detailed:
print("\n{}".format(entry["filename"]))
print(create_detailed_results(entry))
else:
print("{:<50}{}".format(entry["filename"], entry["status"]))
except Exception as e:
logger_validator_api.debug("display_results: Exception: {}".format(e))
print("Error: display_results: {}".format(e))
return |
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'children': ['15', '24', '34', '46']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'api_data'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'api_data'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '27', 'type': 'dictionary', 'children': ['28', '31']},{'id': '28', 'type': 'pair', 'children': ['29', '30']},{'id': '29', 'type': 'string', 'children': [], 'value': "'json_payload'"},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'api_data'},{'id': '31', 'type': 'pair', 'children': ['32', '33']},{'id': '32', 'type': 'string', 'children': [], 'value': "'apikey'"},{'id': '33', 'type': 'string', 'children': [], 'value': "'lipd_linked'"},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '41', 'type': 'argument_list', 'children': ['42', '43']},{'id': '42', 'type': 'string', 'children': [], 'value': "'http://www.lipd.net/api/validator'"},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '46', 'type': 'if_statement', 'children': ['47', '52', '69', '92', '117']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '51'], 'value': '=='},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '51', 'type': 'integer', 'children': [], 'value': '413'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '56', 'type': 'dictionary', 'children': ['57', '60', '63', '66']},{'id': '57', 'type': 'pair', 'children': ['58', '59']},{'id': '58', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '59', 'type': 'dictionary', 'children': []},{'id': '60', 'type': 'pair', 'children': ['61', '62']},{'id': '61', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '62', 'type': 'dictionary', 'children': []},{'id': '63', 'type': 'pair', 'children': ['64', '65']},{'id': '64', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '65', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '66', 'type': 'pair', 'children': ['67', '68']},{'id': '67', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '68', 'type': 'string', 'children': [], 'value': '"HTTP 413: Request Entity Too Large"'},{'id': '69', 'type': 'elif_clause', 'children': ['70', '75']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '74'], 'value': '=='},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '74', 'type': 'integer', 'children': [], 'value': '404'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '79', 'type': 'dictionary', 'children': ['80', '83', '86', '89']},{'id': '80', 'type': 'pair', 'children': ['81', '82']},{'id': '81', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '82', 'type': 'dictionary', 'children': []},{'id': '83', 'type': 'pair', 'children': ['84', '85']},{'id': '84', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '85', 'type': 'dictionary', 'children': []},{'id': '86', 'type': 'pair', 'children': ['87', '88']},{'id': '87', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '88', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '89', 'type': 'pair', 'children': ['90', '91']},{'id': '90', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '91', 'type': 'string', 'children': [], 'value': '"HTTP 404: Not Found"'},{'id': '92', 'type': 'elif_clause', 'children': ['93', '98']},{'id': '93', 'type': 'comparison_operator', 'children': ['94', '97'], 'value': '=='},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'status_code'},{'id': '97', 'type': 'integer', 'children': [], 'value': '400'},{'id': '98', 'type': 'block', 'children': ['99']},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '102', 'type': 'dictionary', 'children': ['103', '106', '109', '112']},{'id': '103', 'type': 'pair', 'children': ['104', '105']},{'id': '104', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '105', 'type': 'dictionary', 'children': []},{'id': '106', 'type': 'pair', 'children': ['107', '108']},{'id': '107', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '108', 'type': 'dictionary', 'children': []},{'id': '109', 'type': 'pair', 'children': ['110', '111']},{'id': '110', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '111', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '112', 'type': 'pair', 'children': ['113', '114']},{'id': '113', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '117', 'type': 'else_clause', 'children': ['118']},{'id': '118', 'type': 'block', 'children': ['119']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'loads'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '130', 'type': 'except_clause', 'children': ['131', '135']},{'id': '131', 'type': 'as_pattern', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '133', 'type': 'as_pattern_target', 'children': ['134']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '135', 'type': 'block', 'children': ['136', '148']},{'id': '136', 'type': 'expression_statement', 'children': ['137']},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'logger_validator_api'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'string', 'children': [], 'value': '"get_validator_results: TypeError: {}"'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '151', 'type': 'dictionary', 'children': ['152', '155', '158', '161']},{'id': '152', 'type': 'pair', 'children': ['153', '154']},{'id': '153', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '154', 'type': 'dictionary', 'children': []},{'id': '155', 'type': 'pair', 'children': ['156', '157']},{'id': '156', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '157', 'type': 'dictionary', 'children': []},{'id': '158', 'type': 'pair', 'children': ['159', '160']},{'id': '159', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '160', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '161', 'type': 'pair', 'children': ['162', '163']},{'id': '162', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '163', 'type': 'string', 'children': [], 'value': '"JSON DECODE ERROR"'},{'id': '164', 'type': 'except_clause', 'children': ['165', '173']},{'id': '165', 'type': 'as_pattern', 'children': ['166', '171']},{'id': '166', 'type': 'attribute', 'children': ['167', '170']},{'id': '167', 'type': 'attribute', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'exceptions'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'ConnectionError'},{'id': '171', 'type': 'as_pattern_target', 'children': ['172']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '173', 'type': 'block', 'children': ['174', '186']},{'id': '174', 'type': 'expression_statement', 'children': ['175']},{'id': '175', 'type': 'call', 'children': ['176', '179']},{'id': '176', 'type': 'attribute', 'children': ['177', '178']},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'logger_validator_api'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'warning'},{'id': '179', 'type': 'argument_list', 'children': ['180']},{'id': '180', 'type': 'call', 'children': ['181', '184']},{'id': '181', 'type': 'attribute', 'children': ['182', '183']},{'id': '182', 'type': 'string', 'children': [], 'value': '"get_validator_results: ConnectionError: {}"'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'assignment', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '189', 'type': 'dictionary', 'children': ['190', '193', '196', '199']},{'id': '190', 'type': 'pair', 'children': ['191', '192']},{'id': '191', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '192', 'type': 'dictionary', 'children': []},{'id': '193', 'type': 'pair', 'children': ['194', '195']},{'id': '194', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '195', 'type': 'dictionary', 'children': []},{'id': '196', 'type': 'pair', 'children': ['197', '198']},{'id': '197', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '198', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '199', 'type': 'pair', 'children': ['200', '201']},{'id': '200', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '201', 'type': 'string', 'children': [], 'value': '"UNABLE TO REACH SERVER"'},{'id': '202', 'type': 'except_clause', 'children': ['203', '207']},{'id': '203', 'type': 'as_pattern', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '205', 'type': 'as_pattern_target', 'children': ['206']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '207', 'type': 'block', 'children': ['208', '220']},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'call', 'children': ['210', '213']},{'id': '210', 'type': 'attribute', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'logger_validator_api'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '213', 'type': 'argument_list', 'children': ['214']},{'id': '214', 'type': 'call', 'children': ['215', '218']},{'id': '215', 'type': 'attribute', 'children': ['216', '217']},{'id': '216', 'type': 'string', 'children': [], 'value': '"get_validator_results: Exception: {}"'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'assignment', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '223', 'type': 'dictionary', 'children': ['224', '227', '230', '233']},{'id': '224', 'type': 'pair', 'children': ['225', '226']},{'id': '225', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '226', 'type': 'dictionary', 'children': []},{'id': '227', 'type': 'pair', 'children': ['228', '229']},{'id': '228', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '229', 'type': 'dictionary', 'children': []},{'id': '230', 'type': 'pair', 'children': ['231', '232']},{'id': '231', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '232', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '233', 'type': 'pair', 'children': ['234', '235']},{'id': '234', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '235', 'type': 'call', 'children': ['236', '239']},{'id': '236', 'type': 'attribute', 'children': ['237', '238']},{'id': '237', 'type': 'string', 'children': [], 'value': '"ERROR BEFORE VALIDATION, {}"'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '241', 'type': 'if_statement', 'children': ['242', '244']},{'id': '242', 'type': 'not_operator', 'children': ['243']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '244', 'type': 'block', 'children': ['245']},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'assignment', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '248', 'type': 'dictionary', 'children': ['249', '252', '255', '258']},{'id': '249', 'type': 'pair', 'children': ['250', '251']},{'id': '250', 'type': 'string', 'children': [], 'value': '"dat"'},{'id': '251', 'type': 'dictionary', 'children': []},{'id': '252', 'type': 'pair', 'children': ['253', '254']},{'id': '253', 'type': 'string', 'children': [], 'value': '"feedback"'},{'id': '254', 'type': 'dictionary', 'children': []},{'id': '255', 'type': 'pair', 'children': ['256', '257']},{'id': '256', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '257', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '258', 'type': 'pair', 'children': ['259', '260']},{'id': '259', 'type': 'string', 'children': [], 'value': '"status"'},{'id': '260', 'type': 'string', 'children': [], 'value': '"EMPTY RESPONSE"'},{'id': '261', 'type': 'expression_statement', 'children': ['262']},{'id': '262', 'type': 'assignment', 'children': ['263', '266']},{'id': '263', 'type': 'subscript', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '265', 'type': 'string', 'children': [], 'value': '"filename"'},{'id': '266', 'type': 'identifier', 'children': [], 'value': '_filename'},{'id': '267', 'type': 'return_statement', 'children': ['268']},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'result'} | def call_validator_api(dsn, api_data):
_filename = dsn + ".lpd"
try:
api_data = json.dumps(api_data)
payload = {'json_payload': api_data, 'apikey': 'lipd_linked'}
response = requests.post('http://www.lipd.net/api/validator', data=payload)
if response.status_code == 413:
result = {"dat": {}, "feedback": {}, "filename": _filename,
"status": "HTTP 413: Request Entity Too Large"}
elif response.status_code == 404:
result = {"dat": {}, "feedback": {}, "filename": _filename,
"status": "HTTP 404: Not Found"}
elif response.status_code == 400:
result = {"dat": {}, "feedback": {}, "filename": _filename,
"status": response.text}
else:
result = json.loads(response.text)
except TypeError as e:
logger_validator_api.warning("get_validator_results: TypeError: {}".format(e))
result = {"dat": {}, "feedback": {}, "filename": _filename, "status": "JSON DECODE ERROR"}
except requests.exceptions.ConnectionError as e:
logger_validator_api.warning("get_validator_results: ConnectionError: {}".format(e))
result = {"dat": {}, "feedback": {}, "filename": _filename, "status": "UNABLE TO REACH SERVER"}
except Exception as e:
logger_validator_api.debug("get_validator_results: Exception: {}".format(e))
result = {"dat": {}, "feedback": {}, "filename": _filename, "status": "ERROR BEFORE VALIDATION, {}".format(e)}
if not result:
result = {"dat": {}, "feedback": {}, "filename": _filename, "status": "EMPTY RESPONSE"}
result["filename"] = _filename
return result |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_back_links'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'env'},{'id': '5', 'type': 'block', 'children': ['6', '14', '20', '148']},{'id': '6', 'type': 'if_statement', 'children': ['7', '12']},{'id': '7', 'type': 'subscript', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'env'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'needs_workflow'},{'id': '11', 'type': 'string', 'children': [], 'value': "'backlink_creation'"},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'return_statement', 'children': []},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'env'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'needs_all_needs'},{'id': '20', 'type': 'for_statement', 'children': ['21', '24', '29']},{'id': '21', 'type': 'pattern_list', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'need'},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '28', 'type': 'argument_list', 'children': []},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'for_statement', 'children': ['31', '32', '35']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'link'},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'need'},{'id': '34', 'type': 'string', 'children': [], 'value': '"links"'},{'id': '35', 'type': 'block', 'children': ['36', '47', '67']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '39', 'type': 'subscript', 'children': ['40', '46']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'link'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '46', 'type': 'integer', 'children': [], 'value': '0'},{'id': '47', 'type': 'try_statement', 'children': ['48', '60']},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '52', 'type': 'subscript', 'children': ['53', '59']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'link'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '59', 'type': 'integer', 'children': [], 'value': '1'},{'id': '60', 'type': 'except_clause', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '66', 'type': 'None', 'children': []},{'id': '67', 'type': 'if_statement', 'children': ['68', '71']},{'id': '68', 'type': 'comparison_operator', 'children': ['69', '70'], 'value': 'in'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '71', 'type': 'block', 'children': ['72', '92']},{'id': '72', 'type': 'if_statement', 'children': ['73', '80']},{'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': 'not'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '75', 'type': 'subscript', 'children': ['76', '79']},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '79', 'type': 'string', 'children': [], 'value': '"links_back"'},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '90']},{'id': '83', 'type': 'attribute', 'children': ['84', '89']},{'id': '84', 'type': 'subscript', 'children': ['85', '88']},{'id': '85', 'type': 'subscript', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '88', 'type': 'string', 'children': [], 'value': '"links_back"'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '92', 'type': 'if_statement', 'children': ['93', '96']},{'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': 'is'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '95', 'type': 'None', 'children': []},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'if_statement', 'children': ['98', '105']},{'id': '98', 'type': 'comparison_operator', 'children': ['99', '100'], 'value': 'in'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '100', 'type': 'subscript', 'children': ['101', '104']},{'id': '101', 'type': 'subscript', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '104', 'type': 'string', 'children': [], 'value': "'parts'"},{'id': '105', 'type': 'block', 'children': ['106', '133']},{'id': '106', 'type': 'if_statement', 'children': ['107', '120']},{'id': '107', 'type': 'comparison_operator', 'children': ['108', '109'], 'value': 'not'},{'id': '108', 'type': 'string', 'children': [], 'value': "'links_back'"},{'id': '109', 'type': 'call', 'children': ['110', '119']},{'id': '110', 'type': 'attribute', 'children': ['111', '118']},{'id': '111', 'type': 'subscript', 'children': ['112', '117']},{'id': '112', 'type': 'subscript', 'children': ['113', '116']},{'id': '113', 'type': 'subscript', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '116', 'type': 'string', 'children': [], 'value': "'parts'"},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '119', 'type': 'argument_list', 'children': []},{'id': '120', 'type': 'block', 'children': ['121']},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'assignment', 'children': ['123', '132']},{'id': '123', 'type': 'subscript', 'children': ['124', '131']},{'id': '124', 'type': 'subscript', 'children': ['125', '130']},{'id': '125', 'type': 'subscript', 'children': ['126', '129']},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '129', 'type': 'string', 'children': [], 'value': "'parts'"},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '131', 'type': 'string', 'children': [], 'value': "'links_back'"},{'id': '132', 'type': 'list', 'children': [], 'value': '[]'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'call', 'children': ['135', '146']},{'id': '135', 'type': 'attribute', 'children': ['136', '145']},{'id': '136', 'type': 'subscript', 'children': ['137', '144']},{'id': '137', 'type': 'subscript', 'children': ['138', '143']},{'id': '138', 'type': 'subscript', 'children': ['139', '142']},{'id': '139', 'type': 'subscript', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'needs'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'link_main'},{'id': '142', 'type': 'string', 'children': [], 'value': "'parts'"},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'link_part'},{'id': '144', 'type': 'string', 'children': [], 'value': "'links_back'"},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'assignment', 'children': ['150', '155']},{'id': '150', 'type': 'subscript', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'env'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'needs_workflow'},{'id': '154', 'type': 'string', 'children': [], 'value': "'backlink_creation'"},{'id': '155', 'type': 'True', 'children': []} | def create_back_links(env):
if env.needs_workflow['backlink_creation']:
return
needs = env.needs_all_needs
for key, need in needs.items():
for link in need["links"]:
link_main = link.split('.')[0]
try:
link_part = link.split('.')[1]
except IndexError:
link_part = None
if link_main in needs:
if key not in needs[link_main]["links_back"]:
needs[link_main]["links_back"].append(key)
if link_part is not None:
if link_part in needs[link_main]['parts']:
if 'links_back' not in needs[link_main]['parts'][link_part].keys():
needs[link_main]['parts'][link_part]['links_back'] = []
needs[link_main]['parts'][link_part]['links_back'].append(key)
env.needs_workflow['backlink_creation'] = True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'CaseGroups'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'unicode_dir'},{'id': '6', 'type': 'identifier', 'children': [], 'value': '_UNICODE_DIR'},{'id': '7', 'type': 'block', 'children': ['8', '12', '55', '64', '72', '82', '88']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'togroup'},{'id': '11', 'type': 'dictionary', 'children': []},{'id': '12', 'type': 'function_definition', 'children': ['13', '14', '17']},{'id': '13', 'type': 'function_name', 'children': [], 'value': 'DoLine'},{'id': '14', 'type': 'parameters', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '17', 'type': 'block', 'children': ['18', '26', '34', '41']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '25']},{'id': '20', 'type': 'tuple_pattern', 'children': ['21', '22', '23', '24']},{'id': '21', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'foldtype'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '24', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '26', 'type': 'if_statement', 'children': ['27', '32']},{'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': 'not'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'foldtype'},{'id': '29', 'type': 'tuple', 'children': ['30', '31']},{'id': '30', 'type': 'string', 'children': [], 'value': '"C"'},{'id': '31', 'type': 'string', 'children': [], 'value': '"S"'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'return_statement', 'children': []},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': '_UInt'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '53']},{'id': '43', 'type': 'attribute', 'children': ['44', '52']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'togroup'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'setdefault'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '50', 'type': 'list', 'children': ['51'], 'value': '[lower]'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'codes'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'ReadUnicodeTable'},{'id': '58', 'type': 'argument_list', 'children': ['59', '62', '63']},{'id': '59', 'type': 'binary_operator', 'children': ['60', '61'], 'value': '+'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'unicode_dir'},{'id': '61', 'type': 'string', 'children': [], 'value': '"/CaseFolding.txt"'},{'id': '62', 'type': 'integer', 'children': [], 'value': '4'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'DoLine'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'togroup'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '71', 'type': 'argument_list', 'children': []},{'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '81', 'type': 'argument_list', 'children': []},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '87', 'type': 'argument_list', 'children': []},{'id': '88', 'type': 'return_statement', 'children': ['89']},{'id': '89', 'type': 'expression_list', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'togroup'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'groups'} | def CaseGroups(unicode_dir=_UNICODE_DIR):
togroup = {}
def DoLine(codes, fields):
(_, foldtype, lower, _) = fields
if foldtype not in ("C", "S"):
return
lower = _UInt(lower)
togroup.setdefault(lower, [lower]).extend(codes)
ReadUnicodeTable(unicode_dir+"/CaseFolding.txt", 4, DoLine)
groups = togroup.values()
for g in groups:
g.sort()
groups.sort()
return togroup, groups |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'naturalsortkey'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'list_comprehension', 'children': ['8', '19']},{'id': '8', 'type': 'conditional_expression', 'children': ['9', '13', '18'], 'value': 'if'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'part'},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'part'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'isdigit'},{'id': '17', 'type': 'argument_list', 'children': []},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'part'},{'id': '19', 'type': 'for_in_clause', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'part'},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'string', 'children': [], 'value': "'([0-9]+)'"},{'id': '27', 'type': 'identifier', 'children': [], 'value': 's'} | def naturalsortkey(s):
return [int(part) if part.isdigit() else part
for part in re.split('([0-9]+)', s)] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'max_variance_genes'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'nbins'},{'id': '7', 'type': 'integer', 'children': [], 'value': '5'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '10', 'type': 'float', 'children': [], 'value': '0.2'},{'id': '11', 'type': 'block', 'children': ['12', '16', '53', '61', '74', '83', '177']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'indices'},{'id': '15', 'type': 'list', 'children': [], 'value': '[]'},{'id': '16', 'type': 'if_statement', 'children': ['17', '23', '33']},{'id': '17', 'type': 'call', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'sparse'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'issparse'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '29']},{'id': '26', 'type': 'pattern_list', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'means'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'sparse_mean_var'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '33', 'type': 'else_clause', 'children': ['34']},{'id': '34', 'type': 'block', 'children': ['35', '44']},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'means'},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'mean'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'integer', 'children': [], 'value': '1'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'integer', 'children': [], 'value': '1'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'mean_indices'},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'means'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '60', 'type': 'argument_list', 'children': []},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'n_elements'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'binary_operator', 'children': ['68', '73'], 'value': '/'},{'id': '68', 'type': 'subscript', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '72', 'type': 'integer', 'children': [], 'value': '0'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'nbins'},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'frac_elements'},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'binary_operator', 'children': ['81', '82'], 'value': '*'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'n_elements'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'frac'},{'id': '83', 'type': 'for_statement', 'children': ['84', '85', '89']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'nbins'},{'id': '89', 'type': 'block', 'children': ['90', '106', '123', '129', '137', '150', '156', '170']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'bin_i'},{'id': '93', 'type': 'subscript', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'mean_indices'},{'id': '95', 'type': 'slice', 'children': ['96', '99', '100']},{'id': '96', 'type': 'binary_operator', 'children': ['97', '98'], 'value': '*'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'n_elements'},{'id': '99', 'type': 'colon', 'children': []},{'id': '100', 'type': 'binary_operator', 'children': ['101', '105'], 'value': '*'},{'id': '101', 'type': '()', 'children': ['102']},{'id': '102', 'type': 'binary_operator', 'children': ['103', '104'], 'value': '+'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '104', 'type': 'integer', 'children': [], 'value': '1'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'n_elements'},{'id': '106', 'type': 'if_statement', 'children': ['107', '112']},{'id': '107', 'type': 'comparison_operator', 'children': ['108', '109'], 'value': '=='},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '109', 'type': 'binary_operator', 'children': ['110', '111'], 'value': '-'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'nbins'},{'id': '111', 'type': 'integer', 'children': [], 'value': '1'},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'bin_i'},{'id': '116', 'type': 'subscript', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'mean_indices'},{'id': '118', 'type': 'slice', 'children': ['119', '122']},{'id': '119', 'type': 'binary_operator', 'children': ['120', '121'], 'value': '*'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'n_elements'},{'id': '122', 'type': 'colon', 'children': []},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'assignment', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'var_i'},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'bin_i'},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'var_sorted'},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'var_i'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '136', 'type': 'argument_list', 'children': []},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'assignment', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'top_var_indices'},{'id': '140', 'type': 'subscript', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'var_sorted'},{'id': '142', 'type': 'slice', 'children': ['143', '149']},{'id': '143', 'type': 'binary_operator', 'children': ['144', '148'], 'value': '-'},{'id': '144', 'type': 'call', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'bin_i'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'frac_elements'},{'id': '149', 'type': 'colon', 'children': []},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'assignment', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '153', 'type': 'subscript', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'bin_i'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'top_var_indices'},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '159', 'type': 'list_comprehension', 'children': ['160', '161', '164']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '161', 'type': 'for_in_clause', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '164', 'type': 'if_clause', 'children': ['165']},{'id': '165', 'type': 'comparison_operator', 'children': ['166', '169'], 'value': '>'},{'id': '166', 'type': 'subscript', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '169', 'type': 'integer', 'children': [], 'value': '0'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'indices'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '175', 'type': 'argument_list', 'children': ['176']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '177', 'type': 'return_statement', 'children': ['178']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'indices'} | def max_variance_genes(data, nbins=5, frac=0.2):
indices = []
if sparse.issparse(data):
means, var = sparse_mean_var(data)
else:
means = data.mean(1)
var = data.var(1)
mean_indices = means.argsort()
n_elements = int(data.shape[0]/nbins)
frac_elements = int(n_elements*frac)
for i in range(nbins):
bin_i = mean_indices[i*n_elements : (i+1)*n_elements]
if i==nbins-1:
bin_i = mean_indices[i*n_elements :]
var_i = var[bin_i]
var_sorted = var_i.argsort()
top_var_indices = var_sorted[len(bin_i) - frac_elements:]
ind = bin_i[top_var_indices]
ind = [index for index in ind if var[index]>0]
indices.extend(ind)
return indices |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'unique'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'ar'},{'id': '5', 'type': 'block', 'children': ['6', '8', '14', '32']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '8', 'type': 'import_statement', 'children': ['9']},{'id': '9', 'type': 'aliased_import', 'children': ['10', '13']},{'id': '10', 'type': 'dotted_name', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'dask'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'da'},{'id': '14', 'type': 'if_statement', 'children': ['15', '24']},{'id': '15', 'type': 'call', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '17', 'type': 'argument_list', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'ar'},{'id': '19', 'type': 'attribute', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'da'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'core'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'Array'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'return_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'da'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'unique'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'ar'},{'id': '32', 'type': 'return_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': '_unique'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ar'} | def unique(ar):
r
import dask.array as da
if isinstance(ar, da.core.Array):
return da.unique(ar)
return _unique(ar) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'polls_get'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '7', 'type': 'block', 'children': ['8', '14']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '13']},{'id': '10', 'type': 'subscript', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '12', 'type': 'string', 'children': [], 'value': "'_return_http_data_only'"},{'id': '13', 'type': 'True', 'children': []},{'id': '14', 'type': 'if_statement', 'children': ['15', '21', '30']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'string', 'children': [], 'value': "'callback'"},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'return_statement', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'polls_get_with_http_info'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'dictionary_splat', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '30', 'type': 'else_clause', 'children': ['31']},{'id': '31', 'type': 'block', 'children': ['32', '43']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '36']},{'id': '34', 'type': 'tuple_pattern', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'polls_get_with_http_info'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'dictionary_splat', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '43', 'type': 'return_statement', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'data'} | def polls_get(self, **kwargs):
kwargs['_return_http_data_only'] = True
if kwargs.get('callback'):
return self.polls_get_with_http_info(**kwargs)
else:
(data) = self.polls_get_with_http_info(**kwargs)
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_sorted_actions'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '35', '63']},{'id': '6', 'type': 'for_statement', 'children': ['7', '8', '31']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '8', 'type': 'call', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '10', 'type': 'argument_list', 'children': ['11', '28']},{'id': '11', 'type': 'lambda', 'children': ['12', '14']},{'id': '12', 'type': 'lambda_parameters', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '14', 'type': 'boolean_operator', 'children': ['15', '19', '20'], 'value': 'and'},{'id': '15', 'type': 'not_operator', 'children': ['16']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '19', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '20', 'type': 'not_operator', 'children': ['21']},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'is_action'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '27', 'type': 'string', 'children': [], 'value': "'parsers'"},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': '_actions'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'yield', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '35', 'type': 'for_statement', 'children': ['36', '37', '59']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '39', 'type': 'argument_list', 'children': ['40', '56']},{'id': '40', 'type': 'lambda', 'children': ['41', '43']},{'id': '41', 'type': 'lambda_parameters', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '43', 'type': 'boolean_operator', 'children': ['44', '47', '48'], 'value': 'and'},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'last'},{'id': '47', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '48', 'type': 'not_operator', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'is_action'},{'id': '53', 'type': 'argument_list', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '55', 'type': 'string', 'children': [], 'value': "'parsers'"},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '58', 'type': 'identifier', 'children': [], 'value': '_actions'},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'yield', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '63', 'type': 'for_statement', 'children': ['64', '65', '81']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '67', 'type': 'argument_list', 'children': ['68', '78']},{'id': '68', 'type': 'lambda', 'children': ['69', '71']},{'id': '69', 'type': 'lambda_parameters', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'is_action'},{'id': '75', 'type': 'argument_list', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '77', 'type': 'string', 'children': [], 'value': "'parsers'"},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': '_actions'},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'yield', 'children': ['84']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'a'} | def _sorted_actions(self):
for a in filter(lambda _: not _.last and \
not self.is_action(_, 'parsers'), self._actions):
yield a
for a in filter(lambda _: _.last and \
not self.is_action(_, 'parsers'), self._actions):
yield a
for a in filter(lambda _: self.is_action(_, 'parsers'),
self._actions):
yield a |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'eigendecomp'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'G'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '6', 'type': 'block', 'children': ['7', '15', '28', '37', '52', '58', '82', '90', '105', '124', '132']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'N'},{'id': '10', 'type': 'subscript', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'G'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '14', 'type': 'integer', 'children': [], 'value': '0'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '20']},{'id': '17', 'type': 'pattern_list', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'lamda'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '20', 'type': 'call', 'children': ['21', '26']},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'linalg'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'eig'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'G'},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'lamda'},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'real'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'lamda'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'indices'},{'id': '40', 'type': 'subscript', 'children': ['41', '47']},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'lamda'},{'id': '47', 'type': 'slice', 'children': ['48', '49', '50']},{'id': '48', 'type': 'colon', 'children': []},{'id': '49', 'type': 'colon', 'children': []},{'id': '50', 'type': 'unary_operator', 'children': ['51'], 'value': '-'},{'id': '51', 'type': 'integer', 'children': [], 'value': '1'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'lamda_sorted'},{'id': '55', 'type': 'subscript', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'lamda'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'indices'},{'id': '58', 'type': 'assert_statement', 'children': ['59', '72']},{'id': '59', 'type': 'call', 'children': ['60', '71']},{'id': '60', 'type': 'attribute', 'children': ['61', '70']},{'id': '61', 'type': '()', 'children': ['62']},{'id': '62', 'type': 'comparison_operator', 'children': ['63', '68'], 'value': '>'},{'id': '63', 'type': 'subscript', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'lamda_sorted'},{'id': '65', 'type': 'slice', 'children': ['66', '67']},{'id': '66', 'type': 'colon', 'children': []},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '68', 'type': 'unary_operator', 'children': ['69'], 'value': '-'},{'id': '69', 'type': 'float', 'children': [], 'value': '1e-10'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '71', 'type': 'argument_list', 'children': []},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'string', 'children': [], 'value': '"{} not all positive!"'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'subscript', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'lamda_sorted'},{'id': '79', 'type': 'slice', 'children': ['80', '81']},{'id': '80', 'type': 'colon', 'children': []},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'assignment', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '85', 'type': 'subscript', 'children': ['86', '87', '89']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'u'},{'id': '87', 'type': 'slice', 'children': ['88']},{'id': '88', 'type': 'colon', 'children': []},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'indices'},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'empty'},{'id': '97', 'type': 'argument_list', 'children': ['98', '100']},{'id': '98', 'type': 'tuple', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'N'},{'id': '100', 'type': 'keyword_argument', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'lamda'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'call', 'children': ['107', '110']},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'sqrt'},{'id': '110', 'type': 'argument_list', 'children': ['111', '116']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'lamda_sorted'},{'id': '113', 'type': 'slice', 'children': ['114', '115']},{'id': '114', 'type': 'colon', 'children': []},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '118', 'type': 'subscript', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '120', 'type': 'slice', 'children': ['121', '122', '123']},{'id': '121', 'type': 'integer', 'children': [], 'value': '0'},{'id': '122', 'type': 'colon', 'children': []},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '131']},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '128', 'type': 'slice', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '130', 'type': 'colon', 'children': []},{'id': '131', 'type': 'float', 'children': [], 'value': '0.0'},{'id': '132', 'type': 'return_statement', 'children': ['133']},{'id': '133', 'type': 'expression_list', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'factor'},{'id': '135', 'type': 'call', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'real'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'u'} | def eigendecomp(G, d):
N = G.shape[0]
lamda, u = np.linalg.eig(G)
lamda = np.real(lamda)
indices = np.argsort(lamda)[::-1]
lamda_sorted = lamda[indices]
assert (lamda_sorted[
:d] > -1e-10).all(), "{} not all positive!".format(lamda_sorted[:d])
u = u[:, indices]
factor = np.empty((N,), dtype=lamda.dtype)
np.sqrt(lamda_sorted[:d], out=factor[0:d])
factor[d:] = 0.0
return factor, np.real(u) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_astrom'},{'id': '3', 'type': 'parameters', 'children': ['4', '7']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'official'},{'id': '6', 'type': 'string', 'children': [], 'value': "'%'"},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'provisional'},{'id': '9', 'type': 'string', 'children': [], 'value': "'%'"},{'id': '10', 'type': 'block', 'children': ['11', '15', '19', '36', '43', '50']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '14', 'type': 'string', 'children': [], 'value': '"SELECT m.* FROM measure m "'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'augmented_assignment', 'children': ['17', '18'], 'value': '+='},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '18', 'type': 'string', 'children': [], 'value': '"LEFT JOIN object o ON m.provisional LIKE o.provisional "'},{'id': '19', 'type': 'if_statement', 'children': ['20', '22', '27']},{'id': '20', 'type': 'not_operator', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'official'},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'augmented_assignment', 'children': ['25', '26'], 'value': '+='},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '26', 'type': 'string', 'children': [], 'value': '"WHERE o.official IS NULL"'},{'id': '27', 'type': 'else_clause', 'children': ['28']},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'augmented_assignment', 'children': ['31', '32'], 'value': '+='},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '32', 'type': 'binary_operator', 'children': ['33', '34'], 'value': '%'},{'id': '33', 'type': 'string', 'children': [], 'value': '"WHERE o.official LIKE \'%s\' "'},{'id': '34', 'type': 'tuple', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'official'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'augmented_assignment', 'children': ['38', '39'], 'value': '+='},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '39', 'type': 'binary_operator', 'children': ['40', '41'], 'value': '%'},{'id': '40', 'type': 'string', 'children': [], 'value': '" AND m.provisional LIKE \'%s\' "'},{'id': '41', 'type': 'tuple', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'provisional'},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'cfeps'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '50', 'type': 'return_statement', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'mk_dict'},{'id': '53', 'type': 'argument_list', 'children': ['54', '59']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'cfeps'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'fetchall'},{'id': '58', 'type': 'argument_list', 'children': []},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'cfeps'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'description'} | def get_astrom(official='%',provisional='%'):
sql= "SELECT m.* FROM measure m "
sql+="LEFT JOIN object o ON m.provisional LIKE o.provisional "
if not official:
sql+="WHERE o.official IS NULL"
else:
sql+="WHERE o.official LIKE '%s' " % ( official, )
sql+=" AND m.provisional LIKE '%s' " % ( provisional, )
cfeps.execute(sql)
return mk_dict(cfeps.fetchall(), cfeps.description) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_by_field'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'issues'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '7', 'type': 'string', 'children': [], 'value': "'closed_at'"},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'return_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '15', 'type': 'argument_list', 'children': ['16', '17', '25']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'issues'},{'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '19', 'type': 'lambda', 'children': ['20', '22']},{'id': '20', 'type': 'lambda_parameters', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '22', 'type': 'subscript', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'reverse'} | def sorted_by_field(issues, field='closed_at', reverse=False):
return sorted(issues, key = lambda i:i[field], reverse=reverse) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'order_by'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'identity'},{'id': '8', 'type': 'block', 'children': ['9', '11', '25', '49']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'string', 'children': [], 'value': "'''Sorts by a key in ascending order.\n Introduces a primary sorting order to the sequence. Additional sort\n criteria should be specified by subsequent calls to then_by() and\n then_by_descending(). Calling order_by() or order_by_descending() on\n the results of a call to order_by() will introduce a new primary\n ordering which will override any already established ordering.\n This method performs a stable sort. The order of two elements with the\n same key will be preserved.\n Note: This method uses deferred execution.\n Args:\n key_selector: A unary function which extracts a key from each\n element using which the result will be ordered.\n Returns:\n An OrderedQueryable over the sorted elements.\n Raises:\n ValueError: If the Queryable is closed.\n TypeError: If the key_selector is not callable.\n '''"},{'id': '11', 'type': 'if_statement', 'children': ['12', '17']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'closed'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'raise_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'concatenated_string', 'children': ['23', '24']},{'id': '23', 'type': 'string', 'children': [], 'value': '"Attempt to call order_by() on a "'},{'id': '24', 'type': 'string', 'children': [], 'value': '"closed Queryable."'},{'id': '25', 'type': 'if_statement', 'children': ['26', '31']},{'id': '26', 'type': 'not_operator', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'is_callable'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'raise_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '42']},{'id': '37', 'type': 'attribute', 'children': ['38', '41']},{'id': '38', 'type': 'concatenated_string', 'children': ['39', '40']},{'id': '39', 'type': 'string', 'children': [], 'value': '"order_by() parameter key_selector={key_selector} "'},{'id': '40', 'type': 'string', 'children': [], 'value': '"is not callable"'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'repr'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '49', 'type': 'return_statement', 'children': ['50']},{'id': '50', 'type': 'call', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '53', 'type': 'identifier', 'children': [], 'value': '_create_ordered'},{'id': '54', 'type': 'argument_list', 'children': ['55', '59', '61']},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '59', 'type': 'unary_operator', 'children': ['60'], 'value': '-'},{'id': '60', 'type': 'integer', 'children': [], 'value': '1'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'key_selector'} | def order_by(self, key_selector=identity):
'''Sorts by a key in ascending order.
Introduces a primary sorting order to the sequence. Additional sort
criteria should be specified by subsequent calls to then_by() and
then_by_descending(). Calling order_by() or order_by_descending() on
the results of a call to order_by() will introduce a new primary
ordering which will override any already established ordering.
This method performs a stable sort. The order of two elements with the
same key will be preserved.
Note: This method uses deferred execution.
Args:
key_selector: A unary function which extracts a key from each
element using which the result will be ordered.
Returns:
An OrderedQueryable over the sorted elements.
Raises:
ValueError: If the Queryable is closed.
TypeError: If the key_selector is not callable.
'''
if self.closed():
raise ValueError("Attempt to call order_by() on a "
"closed Queryable.")
if not is_callable(key_selector):
raise TypeError("order_by() parameter key_selector={key_selector} "
"is not callable".format(key_selector=repr(key_selector)))
return self._create_ordered(iter(self), -1, key_selector) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'then_by'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'identity'},{'id': '8', 'type': 'block', 'children': ['9', '11', '25', '49', '61']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'string', 'children': [], 'value': "'''Introduce subsequent ordering to the sequence with an optional key.\n The returned sequence will be sorted in ascending order by the\n selected key.\n Note: This method uses deferred execution.\n Args:\n key_selector: A unary function the only positional argument to\n which is the element value from which the key will be\n selected. The return value should be the key from that\n element.\n Returns:\n An OrderedQueryable over the sorted items.\n Raises:\n ValueError: If the OrderedQueryable is closed().\n TypeError: If key_selector is not callable.\n '''"},{'id': '11', 'type': 'if_statement', 'children': ['12', '17']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'closed'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'raise_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'concatenated_string', 'children': ['23', '24']},{'id': '23', 'type': 'string', 'children': [], 'value': '"Attempt to call then_by() on a "'},{'id': '24', 'type': 'string', 'children': [], 'value': '"closed OrderedQueryable."'},{'id': '25', 'type': 'if_statement', 'children': ['26', '31']},{'id': '26', 'type': 'not_operator', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'is_callable'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'raise_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '42']},{'id': '37', 'type': 'attribute', 'children': ['38', '41']},{'id': '38', 'type': 'concatenated_string', 'children': ['39', '40']},{'id': '39', 'type': 'string', 'children': [], 'value': '"then_by() parameter key_selector={key_selector} "'},{'id': '40', 'type': 'string', 'children': [], 'value': '"is not callable"'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'repr'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'call', 'children': ['51', '56']},{'id': '51', 'type': 'attribute', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'identifier', 'children': [], 'value': '_funcs'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'tuple', 'children': ['58', '60']},{'id': '58', 'type': 'unary_operator', 'children': ['59'], 'value': '-'},{'id': '59', 'type': 'integer', 'children': [], 'value': '1'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'key_selector'},{'id': '61', 'type': 'return_statement', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'} | def then_by(self, key_selector=identity):
'''Introduce subsequent ordering to the sequence with an optional key.
The returned sequence will be sorted in ascending order by the
selected key.
Note: This method uses deferred execution.
Args:
key_selector: A unary function the only positional argument to
which is the element value from which the key will be
selected. The return value should be the key from that
element.
Returns:
An OrderedQueryable over the sorted items.
Raises:
ValueError: If the OrderedQueryable is closed().
TypeError: If key_selector is not callable.
'''
if self.closed():
raise ValueError("Attempt to call then_by() on a "
"closed OrderedQueryable.")
if not is_callable(key_selector):
raise TypeError("then_by() parameter key_selector={key_selector} "
"is not callable".format(key_selector=repr(key_selector)))
self._funcs.append((-1, key_selector))
return self |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '13']},{'id': '8', 'type': 'attribute', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': '_matches'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort_values'},{'id': '13', 'type': 'argument_list', 'children': ['14', '35', '44']},{'id': '14', 'type': 'keyword_argument', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '16', 'type': 'list', 'children': ['17', '20', '23', '26', '29', '32'], 'value': '[constants.SIZE_FIELDNAME, constants.NGRAM_FIELDNAME,\n constants.COUNT_FIELDNAME, constants.LABEL_FIELDNAME,\n constants.WORK_FIELDNAME, constants.SIGLUM_FIELDNAME]'},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'SIZE_FIELDNAME'},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'NGRAM_FIELDNAME'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'COUNT_FIELDNAME'},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'LABEL_FIELDNAME'},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'WORK_FIELDNAME'},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'SIGLUM_FIELDNAME'},{'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '37', 'type': 'list', 'children': ['38', '39', '40', '41', '42', '43'], 'value': '[False, True, False, True, True, True]'},{'id': '38', 'type': 'False', 'children': []},{'id': '39', 'type': 'True', 'children': []},{'id': '40', 'type': 'False', 'children': []},{'id': '41', 'type': 'True', 'children': []},{'id': '42', 'type': 'True', 'children': []},{'id': '43', 'type': 'True', 'children': []},{'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'inplace'},{'id': '46', 'type': 'True', 'children': []} | def sort(self):
self._matches.sort_values(
by=[constants.SIZE_FIELDNAME, constants.NGRAM_FIELDNAME,
constants.COUNT_FIELDNAME, constants.LABEL_FIELDNAME,
constants.WORK_FIELDNAME, constants.SIGLUM_FIELDNAME],
ascending=[False, True, False, True, True, True], inplace=True) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_set_labels'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'catalogue'},{'id': '6', 'type': 'block', 'children': ['7', '94']},{'id': '7', 'type': 'with_statement', 'children': ['8', '13']},{'id': '8', 'type': 'with_clause', 'children': ['9']},{'id': '9', 'type': 'with_item', 'children': ['10']},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '12', 'type': 'identifier', 'children': [], 'value': '_conn'},{'id': '13', 'type': 'block', 'children': ['14', '27', '31']},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '21']},{'id': '16', 'type': 'attribute', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_conn'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '21', 'type': 'argument_list', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'UPDATE_LABELS_SQL'},{'id': '25', 'type': 'list', 'children': ['26'], 'value': "['']"},{'id': '26', 'type': 'string', 'children': [], 'value': "''"},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'labels'},{'id': '30', 'type': 'dictionary', 'children': []},{'id': '31', 'type': 'for_statement', 'children': ['32', '35', '40']},{'id': '32', 'type': 'pattern_list', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'work'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'catalogue'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '39', 'type': 'argument_list', 'children': []},{'id': '40', 'type': 'block', 'children': ['41', '55', '70', '80']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '48']},{'id': '43', 'type': 'attribute', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '46', 'type': 'identifier', 'children': [], 'value': '_conn'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '48', 'type': 'argument_list', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'UPDATE_LABEL_SQL'},{'id': '52', 'type': 'list', 'children': ['53', '54'], 'value': '[label, work]'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'work'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '58', 'type': 'call', 'children': ['59', '64']},{'id': '59', 'type': 'attribute', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': '_conn'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '64', 'type': 'argument_list', 'children': ['65', '68']},{'id': '65', 'type': 'attribute', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'constants'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'SELECT_TEXT_TOKEN_COUNT_SQL'},{'id': '68', 'type': 'list', 'children': ['69'], 'value': '[work]'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'work'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'token_count'},{'id': '73', 'type': 'subscript', 'children': ['74', '79']},{'id': '74', 'type': 'call', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'fetchone'},{'id': '78', 'type': 'argument_list', 'children': []},{'id': '79', 'type': 'string', 'children': [], 'value': "'token_count'"},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '85']},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'labels'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '85', 'type': 'binary_operator', 'children': ['86', '93'], 'value': '+'},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'labels'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '90', 'type': 'argument_list', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '92', 'type': 'integer', 'children': [], 'value': '0'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'token_count'},{'id': '94', 'type': 'return_statement', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'labels'} | def _set_labels(self, catalogue):
with self._conn:
self._conn.execute(constants.UPDATE_LABELS_SQL, [''])
labels = {}
for work, label in catalogue.items():
self._conn.execute(constants.UPDATE_LABEL_SQL, [label, work])
cursor = self._conn.execute(
constants.SELECT_TEXT_TOKEN_COUNT_SQL, [work])
token_count = cursor.fetchone()['token_count']
labels[label] = labels.get(label, 0) + token_count
return labels |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_fn_args'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '5', 'type': 'typed_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '7', 'type': 'type', 'children': ['8']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '9', 'type': 'typed_default_parameter', 'children': ['10', '11', '13']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '11', 'type': 'type', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '22', '29', '38', '50', '68']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'all_args'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'get_all_args'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'required_args'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'get_required_args'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'fn_kwargs'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'pick_kwargs'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36', '37']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'all_args'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'missing_args'},{'id': '41', 'type': 'list_comprehension', 'children': ['42', '43', '46']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'required_args'},{'id': '46', 'type': 'if_clause', 'children': ['47']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': 'not'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'fn_kwargs'},{'id': '50', 'type': 'if_statement', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'missing_args'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'raise_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '63']},{'id': '58', 'type': 'attribute', 'children': ['59', '62']},{'id': '59', 'type': 'concatenated_string', 'children': ['60', '61']},{'id': '60', 'type': 'string', 'children': [], 'value': "'The following args are missing for the function '"},{'id': '61', 'type': 'string', 'children': [], 'value': "'{}: {}.'"},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '63', 'type': 'argument_list', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '66', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'missing_args'},{'id': '68', 'type': 'return_statement', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'fn_kwargs'} | def get_fn_args(fn, kwargs: dict, prefix: str = None):
all_args = get_all_args(fn)
required_args = get_required_args(fn)
fn_kwargs = pick_kwargs(kwargs, all_args, prefix)
missing_args = [arg for arg in required_args if arg not in fn_kwargs]
if missing_args:
raise ValueError(
'The following args are missing for the function '
'{}: {}.'.format(fn.__name__, missing_args)
)
return fn_kwargs |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'pick_kwargs'},{'id': '3', 'type': 'parameters', 'children': ['4', '8', '12']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '8', 'type': 'typed_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'required_args'},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '12', 'type': 'typed_default_parameter', 'children': ['13', '14', '16']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '14', 'type': 'type', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'block', 'children': ['18', '38', '42', '86', '98', '113']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'picked'},{'id': '21', 'type': 'dictionary_comprehension', 'children': ['22', '25', '34']},{'id': '22', 'type': 'pair', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '25', 'type': 'for_in_clause', 'children': ['26', '29']},{'id': '26', 'type': 'pattern_list', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '33', 'type': 'argument_list', 'children': []},{'id': '34', 'type': 'if_clause', 'children': ['35']},{'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'in'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'required_args'},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'prefixed'},{'id': '41', 'type': 'dictionary', 'children': []},{'id': '42', 'type': 'if_statement', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '44', 'type': 'block', 'children': ['45', '51']},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '48', 'type': 'binary_operator', 'children': ['49', '50'], 'value': '+'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '50', 'type': 'string', 'children': [], 'value': "'__'"},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'prefixed'},{'id': '54', 'type': 'dictionary_comprehension', 'children': ['55', '62', '71']},{'id': '55', 'type': 'pair', 'children': ['56', '61']},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': '_remove_prefix'},{'id': '58', 'type': 'argument_list', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '62', 'type': 'for_in_clause', 'children': ['63', '66']},{'id': '63', 'type': 'pattern_list', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '70', 'type': 'argument_list', 'children': []},{'id': '71', 'type': 'if_clause', 'children': ['72']},{'id': '72', 'type': 'boolean_operator', 'children': ['73', '79'], 'value': 'and'},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '85'], 'value': 'in'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': '_remove_prefix'},{'id': '82', 'type': 'argument_list', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'required_args'},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'conflicting_args'},{'id': '89', 'type': 'list_comprehension', 'children': ['90', '91', '94']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '91', 'type': 'for_in_clause', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'picked'},{'id': '94', 'type': 'if_clause', 'children': ['95']},{'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': 'in'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'prefixed'},{'id': '98', 'type': 'if_statement', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'conflicting_args'},{'id': '100', 'type': 'block', 'children': ['101']},{'id': '101', 'type': 'raise_statement', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'call', 'children': ['106', '111']},{'id': '106', 'type': 'attribute', 'children': ['107', '110']},{'id': '107', 'type': 'concatenated_string', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': "'Both prefixed and unprefixed args were specified '"},{'id': '109', 'type': 'string', 'children': [], 'value': "'for the following parameters: {}'"},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'conflicting_args'},{'id': '113', 'type': 'return_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'tz'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'merge'},{'id': '118', 'type': 'argument_list', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'picked'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'prefixed'} | def pick_kwargs(kwargs: dict, required_args: list, prefix: str = None):
picked = {k: v for k, v in kwargs.items() if k in required_args}
prefixed = {}
if prefix:
prefix = prefix + '__'
prefixed = {
_remove_prefix(k, prefix): v
for k, v in kwargs.items()
if k.startswith(prefix)
and _remove_prefix(k, prefix) in required_args
}
conflicting_args = [k for k in picked if k in prefixed]
if conflicting_args:
raise ValueError(
'Both prefixed and unprefixed args were specified '
'for the following parameters: {}'.format(conflicting_args)
)
return tz.merge(picked, prefixed) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'search'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'query_type'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_QUERY_TYPE'},{'id': '8', 'type': 'block', 'children': ['9', '18', '34', '72']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '14']},{'id': '11', 'type': 'pattern_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'statement'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'arguments'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': '_build_search'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '18', 'type': 'if_statement', 'children': ['19', '26']},{'id': '19', 'type': 'boolean_operator', 'children': ['20', '23'], 'value': 'and'},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'is'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'statement'},{'id': '22', 'type': 'None', 'children': []},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'is'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'arguments'},{'id': '25', 'type': 'None', 'children': []},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'QueryResults'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33']},{'id': '31', 'type': 'list', 'children': [], 'value': '[]'},{'id': '32', 'type': 'list', 'children': [], 'value': '[]'},{'id': '33', 'type': 'string', 'children': [], 'value': "'AND'"},{'id': '34', 'type': 'with_statement', 'children': ['35', '43']},{'id': '35', 'type': 'with_clause', 'children': ['36']},{'id': '36', 'type': 'with_item', 'children': ['37']},{'id': '37', 'type': 'as_pattern', 'children': ['38', '41']},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'db_connect'},{'id': '40', 'type': 'argument_list', 'children': []},{'id': '41', 'type': 'as_pattern_target', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'db_connection'},{'id': '43', 'type': 'block', 'children': ['44']},{'id': '44', 'type': 'with_statement', 'children': ['45', '55']},{'id': '45', 'type': 'with_clause', 'children': ['46']},{'id': '46', 'type': 'with_item', 'children': ['47']},{'id': '47', 'type': 'as_pattern', 'children': ['48', '53']},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'db_connection'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '52', 'type': 'argument_list', 'children': []},{'id': '53', 'type': 'as_pattern_target', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '55', 'type': 'block', 'children': ['56', '64']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '61', 'type': 'argument_list', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'statement'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'arguments'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'search_results'},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'fetchall'},{'id': '71', 'type': 'argument_list', 'children': []},{'id': '72', 'type': 'return_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'QueryResults'},{'id': '75', 'type': 'argument_list', 'children': ['76', '77', '78']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'search_results'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'query_type'} | def search(query, query_type=DEFAULT_QUERY_TYPE):
statement, arguments = _build_search(query)
if statement is None and arguments is None:
return QueryResults([], [], 'AND')
with db_connect() as db_connection:
with db_connection.cursor() as cursor:
cursor.execute(statement, arguments)
search_results = cursor.fetchall()
return QueryResults(search_results, query, query_type) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_tdms_files'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '5', 'type': 'block', 'children': ['6', '19', '38', '56']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '9', 'type': 'call', 'children': ['10', '18']},{'id': '10', 'type': 'attribute', 'children': ['11', '17']},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'pathlib'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'Path'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'directory'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'resolve'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'tdmslist'},{'id': '22', 'type': 'list_comprehension', 'children': ['23', '24', '32']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '24', 'type': 'for_in_clause', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'rglob'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'string', 'children': [], 'value': '"*.tdms"'},{'id': '32', 'type': 'if_clause', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'is_file'},{'id': '37', 'type': 'argument_list', 'children': []},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'tdmslist'},{'id': '41', 'type': 'list_comprehension', 'children': ['42', '43', '46']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'tdmslist'},{'id': '46', 'type': 'if_clause', 'children': ['47']},{'id': '47', 'type': 'not_operator', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '54']},{'id': '49', 'type': 'attribute', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'endswith'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'string', 'children': [], 'value': '"_traces.tdms"'},{'id': '56', 'type': 'return_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'tdmslist'} | def get_tdms_files(directory):
path = pathlib.Path(directory).resolve()
tdmslist = [r for r in path.rglob("*.tdms") if r.is_file()]
tdmslist = [r for r in tdmslist if not r.name.endswith("_traces.tdms")]
return sorted(tdmslist) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'footrule_dist'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '11', '25', '35', '70']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '11', 'type': 'assert_statement', 'children': ['12']},{'id': '12', 'type': 'boolean_operator', 'children': ['13', '16'], 'value': 'or'},{'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'is'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '15', 'type': 'None', 'children': []},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '21'], 'value': '=='},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'ranks1'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'rankdata'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'method'},{'id': '34', 'type': 'string', 'children': [], 'value': '"average"'},{'id': '35', 'type': 'if_statement', 'children': ['36', '39', '58']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'is'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ranks2'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'arange'},{'id': '47', 'type': 'argument_list', 'children': ['48', '49', '55']},{'id': '48', 'type': 'integer', 'children': [], 'value': '1'},{'id': '49', 'type': 'binary_operator', 'children': ['50', '54'], 'value': '+'},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '54', 'type': 'integer', 'children': [], 'value': '1'},{'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '58', 'type': 'else_clause', 'children': ['59']},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'ranks2'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'rankdata'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'method'},{'id': '69', 'type': 'string', 'children': [], 'value': '"average"'},{'id': '70', 'type': 'return_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'binary_operator', 'children': ['82', '83'], 'value': '-'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'ranks1'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'ranks2'} | def footrule_dist(params1, params2=None):
r
assert params2 is None or len(params1) == len(params2)
ranks1 = rankdata(params1, method="average")
if params2 is None:
ranks2 = np.arange(1, len(params1) + 1, dtype=float)
else:
ranks2 = rankdata(params2, method="average")
return np.sum(np.abs(ranks1 - ranks2)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'kendalltau_dist'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '11', '25', '35', '70', '80', '87', '98']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '11', 'type': 'assert_statement', 'children': ['12']},{'id': '12', 'type': 'boolean_operator', 'children': ['13', '16'], 'value': 'or'},{'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'is'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '15', 'type': 'None', 'children': []},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '21'], 'value': '=='},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'ranks1'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'rankdata'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'method'},{'id': '34', 'type': 'string', 'children': [], 'value': '"ordinal"'},{'id': '35', 'type': 'if_statement', 'children': ['36', '39', '58']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'is'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ranks2'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'arange'},{'id': '47', 'type': 'argument_list', 'children': ['48', '49', '55']},{'id': '48', 'type': 'integer', 'children': [], 'value': '1'},{'id': '49', 'type': 'binary_operator', 'children': ['50', '54'], 'value': '+'},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '54', 'type': 'integer', 'children': [], 'value': '1'},{'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '58', 'type': 'else_clause', 'children': ['59']},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'ranks2'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'rankdata'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'params2'},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'method'},{'id': '69', 'type': 'string', 'children': [], 'value': '"ordinal"'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '75']},{'id': '72', 'type': 'pattern_list', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'tau'},{'id': '74', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'kendalltau'},{'id': '77', 'type': 'argument_list', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'ranks1'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'ranks2'},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'n_items'},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'params1'},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'n_pairs'},{'id': '90', 'type': 'binary_operator', 'children': ['91', '97'], 'value': '/'},{'id': '91', 'type': 'binary_operator', 'children': ['92', '93'], 'value': '*'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'n_items'},{'id': '93', 'type': '()', 'children': ['94']},{'id': '94', 'type': 'binary_operator', 'children': ['95', '96'], 'value': '-'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'n_items'},{'id': '96', 'type': 'integer', 'children': [], 'value': '1'},{'id': '97', 'type': 'integer', 'children': [], 'value': '2'},{'id': '98', 'type': 'return_statement', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'round'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'binary_operator', 'children': ['103', '109'], 'value': '/'},{'id': '103', 'type': '()', 'children': ['104']},{'id': '104', 'type': 'binary_operator', 'children': ['105', '106'], 'value': '-'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'n_pairs'},{'id': '106', 'type': 'binary_operator', 'children': ['107', '108'], 'value': '*'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'n_pairs'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'tau'},{'id': '109', 'type': 'integer', 'children': [], 'value': '2'} | def kendalltau_dist(params1, params2=None):
r
assert params2 is None or len(params1) == len(params2)
ranks1 = rankdata(params1, method="ordinal")
if params2 is None:
ranks2 = np.arange(1, len(params1) + 1, dtype=float)
else:
ranks2 = rankdata(params2, method="ordinal")
tau, _ = kendalltau(ranks1, ranks2)
n_items = len(params1)
n_pairs = n_items * (n_items - 1) / 2
return round((n_pairs - n_pairs * tau) / 2) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parse_sort_string'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '5', 'type': 'block', 'children': ['6', '14', '23', '27', '100', '107']},{'id': '6', 'type': 'if_statement', 'children': ['7', '10']},{'id': '7', 'type': 'comparison_operator', 'children': ['8', '9'], 'value': 'is'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11']},{'id': '11', 'type': 'return_statement', 'children': ['12']},{'id': '12', 'type': 'list', 'children': ['13'], 'value': "['_score']"},{'id': '13', 'type': 'string', 'children': [], 'value': "'_score'"},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '17', 'type': 'call', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'rsplit'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'string', 'children': [], 'value': "','"},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'sortlist'},{'id': '26', 'type': 'list', 'children': [], 'value': '[]'},{'id': '27', 'type': 'for_statement', 'children': ['28', '29', '30']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '30', 'type': 'block', 'children': ['31', '39', '53', '73', '81']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '38', 'type': 'argument_list', 'children': []},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '42', 'type': 'conditional_expression', 'children': ['43', '44', '52'], 'value': 'if'},{'id': '43', 'type': 'string', 'children': [], 'value': "'desc'"},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '51'], 'value': '=='},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '47', 'type': 'slice', 'children': ['48', '49', '50']},{'id': '48', 'type': 'integer', 'children': [], 'value': '0'},{'id': '49', 'type': 'colon', 'children': []},{'id': '50', 'type': 'integer', 'children': [], 'value': '1'},{'id': '51', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '52', 'type': 'string', 'children': [], 'value': "'asc'"},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '56', 'type': 'conditional_expression', 'children': ['57', '62', '72'], 'value': 'if'},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '59', 'type': 'slice', 'children': ['60', '61']},{'id': '60', 'type': 'integer', 'children': [], 'value': '1'},{'id': '61', 'type': 'colon', 'children': []},{'id': '62', 'type': 'comparison_operator', 'children': ['63', '69'], 'value': 'in'},{'id': '63', 'type': 'subscript', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '65', 'type': 'slice', 'children': ['66', '67', '68']},{'id': '66', 'type': 'integer', 'children': [], 'value': '0'},{'id': '67', 'type': 'colon', 'children': []},{'id': '68', 'type': 'integer', 'children': [], 'value': '1'},{'id': '69', 'type': 'list', 'children': ['70', '71'], 'value': "['-', '+']"},{'id': '70', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '71', 'type': 'string', 'children': [], 'value': "'+'"},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'se'},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '80', 'type': 'argument_list', 'children': []},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'sortlist'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'dictionary', 'children': ['88']},{'id': '88', 'type': 'pair', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '90', 'type': 'dictionary', 'children': ['91', '94', '97']},{'id': '91', 'type': 'pair', 'children': ['92', '93']},{'id': '92', 'type': 'string', 'children': [], 'value': '"order"'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '94', 'type': 'pair', 'children': ['95', '96']},{'id': '95', 'type': 'string', 'children': [], 'value': '"unmapped_type"'},{'id': '96', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '97', 'type': 'pair', 'children': ['98', '99']},{'id': '98', 'type': 'string', 'children': [], 'value': '"missing"'},{'id': '99', 'type': 'string', 'children': [], 'value': '"_last"'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'sortlist'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'string', 'children': [], 'value': "'_score'"},{'id': '107', 'type': 'return_statement', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'sortlist'} | def parse_sort_string(sort):
if sort is None:
return ['_score']
l = sort.rsplit(',')
sortlist = []
for se in l:
se = se.strip()
order = 'desc' if se[0:1] == '-' else 'asc'
field = se[1:] if se[0:1] in ['-', '+'] else se
field = field.strip()
sortlist.append({field: {"order": order, "unmapped_type": "string", "missing": "_last"}})
sortlist.append('_score')
return sortlist |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_config_dir'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '7', 'type': 'string', 'children': [], 'value': '"*.config"'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'configspec'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'allow_errors'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '24', '37', '55', '62', '68', '136']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'getLogger'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'string', 'children': [], 'value': '"Loading all files matching {0} in {1}"'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '40', 'type': 'call', 'children': ['41', '54']},{'id': '41', 'type': 'attribute', 'children': ['42', '53']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'Globber'},{'id': '44', 'type': 'argument_list', 'children': ['45', '46', '50']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'include'},{'id': '48', 'type': 'list', 'children': ['49'], 'value': '[pattern]'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'pattern'},{'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '52', 'type': 'False', 'children': []},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'glob'},{'id': '54', 'type': 'argument_list', 'children': []},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'ConfigObj'},{'id': '67', 'type': 'argument_list', 'children': []},{'id': '68', 'type': 'for_statement', 'children': ['69', '70', '71']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '71', 'type': 'block', 'children': ['72', '84', '117', '129']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'string', 'children': [], 'value': '"- Loading config for {0}"'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '84', 'type': 'try_statement', 'children': ['85', '96']},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'conf'},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'ConfigObj'},{'id': '91', 'type': 'argument_list', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'configspec'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'configspec'},{'id': '96', 'type': 'except_clause', 'children': ['97', '98', '99']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'ConfigObjError'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'coe'},{'id': '99', 'type': 'block', 'children': ['100', '116']},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'call', 'children': ['107', '110']},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': '"An error occurred while parsing {0}: {1}"'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '110', 'type': 'argument_list', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '112', 'type': 'call', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'coe'},{'id': '116', 'type': 'continue_statement', 'children': []},{'id': '117', 'type': 'if_statement', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'configspec'},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '125']},{'id': '122', 'type': 'attribute', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'conf'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'validate'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'Validator'},{'id': '128', 'type': 'argument_list', 'children': []},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'call', 'children': ['131', '134']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'merge'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'conf'},{'id': '136', 'type': 'return_statement', 'children': ['137']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'config'} | def get_config_dir(path, pattern="*.config", configspec=None, allow_errors=False):
logger = logging.getLogger(__name__)
logger.debug("Loading all files matching {0} in {1}".format(pattern, path))
files = Globber(path, include=[pattern], recursive=False).glob()
files = sorted(files)
config = ConfigObj()
for filename in files:
logger.debug("- Loading config for {0}".format(filename))
try:
conf = ConfigObj(filename, configspec=configspec)
except ConfigObjError, coe:
logger.error("An error occurred while parsing {0}: {1}".format(filename, str(coe)))
continue
if configspec:
conf.validate(Validator())
config.merge(conf)
return config |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'is_first_instance_aws'},{'id': '3', 'type': 'parameters', 'children': []},{'id': '4', 'type': 'block', 'children': ['5', '51', '114', '174']},{'id': '5', 'type': 'try_statement', 'children': ['6', '35']},{'id': '6', 'type': 'block', 'children': ['7', '23', '29']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'instance_details'},{'id': '10', 'type': 'call', 'children': ['11', '22']},{'id': '11', 'type': 'attribute', 'children': ['12', '21']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '16', 'type': 'argument_list', 'children': ['17', '18']},{'id': '17', 'type': 'string', 'children': [], 'value': "'http://169.254.169.254/latest/dynamic/instance-identity/document'"},{'id': '18', 'type': 'keyword_argument', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'timeout'},{'id': '20', 'type': 'integer', 'children': [], 'value': '5'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'instance_id'},{'id': '26', 'type': 'subscript', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'instance_details'},{'id': '28', 'type': 'string', 'children': [], 'value': "'instanceId'"},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'instance_region'},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'instance_details'},{'id': '34', 'type': 'string', 'children': [], 'value': "'region'"},{'id': '35', 'type': 'except_clause', 'children': ['36', '45']},{'id': '36', 'type': 'as_pattern', 'children': ['37', '43']},{'id': '37', 'type': 'tuple', 'children': ['38', '41', '42']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'requests'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'RequestException'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '43', 'type': 'as_pattern_target', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'raise_statement', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'StackInterrogationException'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '51', 'type': 'try_statement', 'children': ['52', '96', '107']},{'id': '52', 'type': 'block', 'children': ['53', '65', '77', '86']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'autoscaling_client'},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'boto3'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'client'},{'id': '60', 'type': 'argument_list', 'children': ['61', '62']},{'id': '61', 'type': 'string', 'children': [], 'value': "'autoscaling'"},{'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'region_name'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'instance_region'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'autoscaling_client'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'describe_auto_scaling_instances'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'keyword_argument', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'InstanceIds'},{'id': '75', 'type': 'list', 'children': ['76'], 'value': '[instance_id]'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'instance_id'},{'id': '77', 'type': 'assert_statement', 'children': ['78']},{'id': '78', 'type': 'comparison_operator', 'children': ['79', '85'], 'value': '=='},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '84', 'type': 'string', 'children': [], 'value': "'AutoScalingInstances'"},{'id': '85', 'type': 'integer', 'children': [], 'value': '1'},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'autoscaling_group'},{'id': '89', 'type': 'subscript', 'children': ['90', '95']},{'id': '90', 'type': 'subscript', 'children': ['91', '94']},{'id': '91', 'type': 'subscript', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '93', 'type': 'string', 'children': [], 'value': "'AutoScalingInstances'"},{'id': '94', 'type': 'integer', 'children': [], 'value': '0'},{'id': '95', 'type': 'string', 'children': [], 'value': "'AutoScalingGroupName'"},{'id': '96', 'type': 'except_clause', 'children': ['97', '101']},{'id': '97', 'type': 'as_pattern', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'ClientError'},{'id': '99', 'type': 'as_pattern_target', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'raise_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'StackInterrogationException'},{'id': '105', 'type': 'argument_list', 'children': ['106']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '107', 'type': 'except_clause', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'AssertionError'},{'id': '109', 'type': 'block', 'children': ['110']},{'id': '110', 'type': 'raise_statement', 'children': ['111']},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'InstanceNotInAsgException'},{'id': '113', 'type': 'argument_list', 'children': []},{'id': '114', 'type': 'try_statement', 'children': ['115', '161']},{'id': '115', 'type': 'block', 'children': ['116', '128', '137']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '119', 'type': 'call', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'autoscaling_client'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'describe_auto_scaling_groups'},{'id': '123', 'type': 'argument_list', 'children': ['124']},{'id': '124', 'type': 'keyword_argument', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'AutoScalingGroupNames'},{'id': '126', 'type': 'list', 'children': ['127'], 'value': '[autoscaling_group]'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'autoscaling_group'},{'id': '128', 'type': 'assert_statement', 'children': ['129']},{'id': '129', 'type': 'comparison_operator', 'children': ['130', '136'], 'value': '=='},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '132', 'type': 'argument_list', 'children': ['133']},{'id': '133', 'type': 'subscript', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '135', 'type': 'string', 'children': [], 'value': "'AutoScalingGroups'"},{'id': '136', 'type': 'integer', 'children': [], 'value': '1'},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'assignment', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'autoscaling_group_instance_ids'},{'id': '140', 'type': 'call', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '142', 'type': 'generator_expression', 'children': ['143', '146', '155']},{'id': '143', 'type': 'subscript', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '145', 'type': 'string', 'children': [], 'value': "'InstanceId'"},{'id': '146', 'type': 'for_in_clause', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '148', 'type': 'subscript', 'children': ['149', '154']},{'id': '149', 'type': 'subscript', 'children': ['150', '153']},{'id': '150', 'type': 'subscript', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '152', 'type': 'string', 'children': [], 'value': "'AutoScalingGroups'"},{'id': '153', 'type': 'integer', 'children': [], 'value': '0'},{'id': '154', 'type': 'string', 'children': [], 'value': "'Instances'"},{'id': '155', 'type': 'if_clause', 'children': ['156']},{'id': '156', 'type': 'comparison_operator', 'children': ['157', '160'], 'value': '=='},{'id': '157', 'type': 'subscript', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'instance'},{'id': '159', 'type': 'string', 'children': [], 'value': "'LifecycleState'"},{'id': '160', 'type': 'string', 'children': [], 'value': "'InService'"},{'id': '161', 'type': 'except_clause', 'children': ['162', '168']},{'id': '162', 'type': 'as_pattern', 'children': ['163', '166']},{'id': '163', 'type': 'tuple', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'ClientError'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'AssertionError'},{'id': '166', 'type': 'as_pattern_target', 'children': ['167']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'raise_statement', 'children': ['170']},{'id': '170', 'type': 'call', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'StackInterrogationException'},{'id': '172', 'type': 'argument_list', 'children': ['173']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '174', 'type': 'return_statement', 'children': ['175']},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'boolean_operator', 'children': ['179', '180'], 'value': 'and'},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'autoscaling_group_instance_ids'},{'id': '180', 'type': 'comparison_operator', 'children': ['181', '184'], 'value': '=='},{'id': '181', 'type': 'subscript', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'autoscaling_group_instance_ids'},{'id': '183', 'type': 'integer', 'children': [], 'value': '0'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'instance_id'} | def is_first_instance_aws():
try:
instance_details = requests.get('http://169.254.169.254/latest/dynamic/instance-identity/document',
timeout=5).json()
instance_id = instance_details['instanceId']
instance_region = instance_details['region']
except (requests.RequestException, ValueError, KeyError) as e:
raise StackInterrogationException(e)
try:
autoscaling_client = boto3.client('autoscaling', region_name=instance_region)
response = autoscaling_client.describe_auto_scaling_instances(InstanceIds=[instance_id])
assert len(response['AutoScalingInstances']) == 1
autoscaling_group = response['AutoScalingInstances'][0]['AutoScalingGroupName']
except ClientError as e:
raise StackInterrogationException(e)
except AssertionError:
raise InstanceNotInAsgException()
try:
response = autoscaling_client.describe_auto_scaling_groups(AutoScalingGroupNames=[autoscaling_group])
assert len(response['AutoScalingGroups']) == 1
autoscaling_group_instance_ids = sorted(
instance['InstanceId']
for instance in response['AutoScalingGroups'][0]['Instances']
if instance['LifecycleState'] == 'InService'
)
except (ClientError, AssertionError) as e:
raise StackInterrogationException(e)
return bool(autoscaling_group_instance_ids and autoscaling_group_instance_ids[0] == instance_id) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'creation_ordered'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'},{'id': '5', 'type': 'block', 'children': ['6', '20', '26', '67', '74', '88', '95', '104']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'next_index'},{'id': '9', 'type': 'call', 'children': ['10', '13']},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'functools'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'partial'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '19', 'type': 'argument_list', 'children': []},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': '__init__orig'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'},{'id': '25', 'type': 'identifier', 'children': [], 'value': '__init__'},{'id': '26', 'type': 'decorated_definition', 'children': ['27', '38']},{'id': '27', 'type': 'decorator', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'functools'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'wraps'},{'id': '32', 'type': 'argument_list', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': '__init__orig'},{'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'assigned'},{'id': '36', 'type': 'list', 'children': ['37'], 'value': "['__doc__']"},{'id': '37', 'type': 'string', 'children': [], 'value': "'__doc__'"},{'id': '38', 'type': 'function_definition', 'children': ['39', '40', '46']},{'id': '39', 'type': 'function_name', 'children': [], 'value': '__init__'},{'id': '40', 'type': 'parameters', 'children': ['41', '42', '44']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'list_splat_pattern', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '44', 'type': 'dictionary_splat_pattern', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '46', 'type': 'block', 'children': ['47', '58']},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'object'},{'id': '51', 'type': 'identifier', 'children': [], 'value': '__setattr__'},{'id': '52', 'type': 'argument_list', 'children': ['53', '54', '55']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '54', 'type': 'string', 'children': [], 'value': "'_index'"},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'next_index'},{'id': '57', 'type': 'argument_list', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': '__init__orig'},{'id': '61', 'type': 'argument_list', 'children': ['62', '63', '65']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'list_splat', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '65', 'type': 'dictionary_splat', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'setattr'},{'id': '70', 'type': 'argument_list', 'children': ['71', '72', '73']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'},{'id': '72', 'type': 'string', 'children': [], 'value': "'__init__'"},{'id': '73', 'type': 'identifier', 'children': [], 'value': '__init__'},{'id': '74', 'type': 'function_definition', 'children': ['75', '76', '79']},{'id': '75', 'type': 'function_name', 'children': [], 'value': '__lt__'},{'id': '76', 'type': 'parameters', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'other'},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'return_statement', 'children': ['81']},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '85'], 'value': '<'},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '84', 'type': 'identifier', 'children': [], 'value': '_index'},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'other'},{'id': '87', 'type': 'identifier', 'children': [], 'value': '_index'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'setattr'},{'id': '91', 'type': 'argument_list', 'children': ['92', '93', '94']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'},{'id': '93', 'type': 'string', 'children': [], 'value': "'__lt__'"},{'id': '94', 'type': 'identifier', 'children': [], 'value': '__lt__'},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'functools'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'total_ordering'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'},{'id': '104', 'type': 'return_statement', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'class_to_decorate'} | def creation_ordered(class_to_decorate):
next_index = functools.partial(next, itertools.count())
__init__orig = class_to_decorate.__init__
@functools.wraps(__init__orig, assigned=['__doc__'])
def __init__(self, *args, **kwargs):
object.__setattr__(self, '_index', next_index())
__init__orig(self, *args, **kwargs)
setattr(class_to_decorate, '__init__', __init__)
def __lt__(self, other):
return self._index < other._index
setattr(class_to_decorate, '__lt__', __lt__)
class_to_decorate = functools.total_ordering(class_to_decorate)
return class_to_decorate |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_members'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'is_member'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': '_parameter'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'block', 'children': ['18', '32', '38', '82', '170', '176', '233']},{'id': '18', 'type': 'if_statement', 'children': ['19', '26']},{'id': '19', 'type': 'boolean_operator', 'children': ['20', '23'], 'value': 'and'},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'is'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '22', 'type': 'None', 'children': []},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'is'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'is_member'},{'id': '25', 'type': 'None', 'children': []},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'raise_statement', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'string', 'children': [], 'value': '"get_members either needs a member_class parameter or an is_member check function (or both)"'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'members'},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '37', 'type': 'argument_list', 'children': []},{'id': '38', 'type': 'for_statement', 'children': ['39', '40', '43']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '42', 'type': 'identifier', 'children': [], 'value': '__bases__'},{'id': '43', 'type': 'block', 'children': ['44', '75']},{'id': '44', 'type': 'if_statement', 'children': ['45', '48', '65']},{'id': '45', 'type': 'comparison_operator', 'children': ['46', '47'], 'value': 'is'},{'id': '46', 'type': 'identifier', 'children': [], 'value': '_parameter'},{'id': '47', 'type': 'None', 'children': []},{'id': '48', 'type': 'block', 'children': ['49']},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'inherited_members'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'get_members'},{'id': '54', 'type': 'argument_list', 'children': ['55', '56', '59', '62']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'is_member'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'is_member'},{'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '65', 'type': 'else_clause', 'children': ['66']},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'inherited_members'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'get_declared'},{'id': '72', 'type': 'argument_list', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '74', 'type': 'identifier', 'children': [], 'value': '_parameter'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'members'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '80', 'type': 'argument_list', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'inherited_members'},{'id': '82', 'type': 'function_definition', 'children': ['83', '84', '85']},{'id': '83', 'type': 'function_name', 'children': [], 'value': 'generate_member_bindings'},{'id': '84', 'type': 'parameters', 'children': []},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'for_statement', 'children': ['87', '88', '91']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '90', 'type': 'identifier', 'children': [], 'value': '__dict__'},{'id': '91', 'type': 'block', 'children': ['92', '101', '109']},{'id': '92', 'type': 'if_statement', 'children': ['93', '99']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'string', 'children': [], 'value': "'__'"},{'id': '99', 'type': 'block', 'children': ['100']},{'id': '100', 'type': 'continue_statement', 'children': []},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '106', 'type': 'argument_list', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '109', 'type': 'if_statement', 'children': ['110', '119', '125', '140']},{'id': '110', 'type': 'boolean_operator', 'children': ['111', '114'], 'value': 'and'},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '113'], 'value': 'is'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '113', 'type': 'None', 'children': []},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '116', 'type': 'argument_list', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'yield', 'children': ['122']},{'id': '122', 'type': 'expression_list', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '125', 'type': 'elif_clause', 'children': ['126', '134']},{'id': '126', 'type': 'boolean_operator', 'children': ['127', '130'], 'value': 'and'},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '129'], 'value': 'is'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'is_member'},{'id': '129', 'type': 'None', 'children': []},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'is_member'},{'id': '132', 'type': 'argument_list', 'children': ['133']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'yield', 'children': ['137']},{'id': '137', 'type': 'expression_list', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '140', 'type': 'elif_clause', 'children': ['141', '162']},{'id': '141', 'type': 'boolean_operator', 'children': ['142', '155'], 'value': 'and'},{'id': '142', 'type': 'boolean_operator', 'children': ['143', '149'], 'value': 'and'},{'id': '143', 'type': 'comparison_operator', 'children': ['144', '148'], 'value': 'is'},{'id': '144', 'type': 'call', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '146', 'type': 'argument_list', 'children': ['147']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '149', 'type': 'comparison_operator', 'children': ['150', '154'], 'value': '=='},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '154', 'type': 'integer', 'children': [], 'value': '1'},{'id': '155', 'type': 'call', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '157', 'type': 'argument_list', 'children': ['158', '161']},{'id': '158', 'type': 'subscript', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '160', 'type': 'integer', 'children': [], 'value': '0'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'member_class'},{'id': '162', 'type': 'block', 'children': ['163']},{'id': '163', 'type': 'raise_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '166', 'type': 'argument_list', 'children': ['167']},{'id': '167', 'type': 'binary_operator', 'children': ['168', '169'], 'value': '%'},{'id': '168', 'type': 'string', 'children': [], 'value': '"\'%s\' is a one-tuple containing what we are looking for. Trailing comma much? Don\'t... just don\'t."'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'bindings'},{'id': '173', 'type': 'call', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'generate_member_bindings'},{'id': '175', 'type': 'argument_list', 'children': []},{'id': '176', 'type': 'if_statement', 'children': ['177', '180', '224']},{'id': '177', 'type': 'comparison_operator', 'children': ['178', '179'], 'value': 'is'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '179', 'type': 'None', 'children': []},{'id': '180', 'type': 'block', 'children': ['181', '217']},{'id': '181', 'type': 'try_statement', 'children': ['182', '201']},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'sorted_bindings'},{'id': '186', 'type': 'call', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '188', 'type': 'argument_list', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'bindings'},{'id': '190', 'type': 'keyword_argument', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '192', 'type': 'lambda', 'children': ['193', '195']},{'id': '193', 'type': 'lambda_parameters', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '195', 'type': 'call', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'subscript', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '200', 'type': 'integer', 'children': [], 'value': '1'},{'id': '201', 'type': 'except_clause', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '203', 'type': 'block', 'children': ['204']},{'id': '204', 'type': 'if_statement', 'children': ['205', '208', '214']},{'id': '205', 'type': 'comparison_operator', 'children': ['206', '207'], 'value': 'is'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'default_sort_key'},{'id': '208', 'type': 'block', 'children': ['209']},{'id': '209', 'type': 'raise_statement', 'children': ['210']},{'id': '210', 'type': 'call', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '212', 'type': 'argument_list', 'children': ['213']},{'id': '213', 'type': 'string', 'children': [], 'value': "'Missing member ordering definition. Use @creation_ordered or specify sort_key'"},{'id': '214', 'type': 'else_clause', 'children': ['215']},{'id': '215', 'type': 'block', 'children': ['216']},{'id': '216', 'type': 'raise_statement', 'children': []},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'call', 'children': ['219', '222']},{'id': '219', 'type': 'attribute', 'children': ['220', '221']},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'members'},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '222', 'type': 'argument_list', 'children': ['223']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'sorted_bindings'},{'id': '224', 'type': 'else_clause', 'children': ['225']},{'id': '225', 'type': 'block', 'children': ['226']},{'id': '226', 'type': 'expression_statement', 'children': ['227']},{'id': '227', 'type': 'call', 'children': ['228', '231']},{'id': '228', 'type': 'attribute', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'members'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '231', 'type': 'argument_list', 'children': ['232']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'bindings'},{'id': '233', 'type': 'return_statement', 'children': ['234']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'members'} | def get_members(cls, member_class=None, is_member=None, sort_key=None, _parameter=None):
if member_class is None and is_member is None:
raise TypeError("get_members either needs a member_class parameter or an is_member check function (or both)")
members = OrderedDict()
for base in cls.__bases__:
if _parameter is None:
inherited_members = get_members(base, member_class=member_class, is_member=is_member, sort_key=sort_key)
else:
inherited_members = get_declared(base, _parameter)
members.update(inherited_members)
def generate_member_bindings():
for name in cls.__dict__:
if name.startswith('__'):
continue
obj = getattr(cls, name)
if member_class is not None and isinstance(obj, member_class):
yield name, obj
elif is_member is not None and is_member(obj):
yield name, obj
elif type(obj) is tuple and len(obj) == 1 and isinstance(obj[0], member_class):
raise TypeError("'%s' is a one-tuple containing what we are looking for. Trailing comma much? Don't... just don't." % name)
bindings = generate_member_bindings()
if sort_key is not None:
try:
sorted_bindings = sorted(bindings, key=lambda x: sort_key(x[1]))
except AttributeError:
if sort_key is default_sort_key:
raise TypeError('Missing member ordering definition. Use @creation_ordered or specify sort_key')
else:
raise
members.update(sorted_bindings)
else:
members.update(bindings)
return members |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_field'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '20', '51', '70']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': '_normalize_field_name'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '20', 'type': 'if_statement', 'children': ['21', '24', '29', '39']},{'id': '21', 'type': 'comparison_operator', 'children': ['22', '23'], 'value': '>'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '23', 'type': 'integer', 'children': [], 'value': '0'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '28', 'type': 'integer', 'children': [], 'value': '1'},{'id': '29', 'type': 'elif_clause', 'children': ['30', '33']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': '<'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '32', 'type': 'integer', 'children': [], 'value': '0'},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '37', 'type': 'unary_operator', 'children': ['38'], 'value': '-'},{'id': '38', 'type': 'integer', 'children': [], 'value': '1'},{'id': '39', 'type': 'else_clause', 'children': ['40']},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'raise_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'string', 'children': [], 'value': '"direction {} is undefined"'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '58']},{'id': '53', 'type': 'attribute', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'fields_sort'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '58', 'type': 'argument_list', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '60', 'type': 'list', 'children': ['61', '62', '63'], 'value': '[direction, field_name, list(field_vals) if field_vals else field_vals]'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '63', 'type': 'conditional_expression', 'children': ['64', '68', '69'], 'value': 'if'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '70', 'type': 'return_statement', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'} | def sort_field(self, field_name, direction, field_vals=None):
field_name = self._normalize_field_name(field_name)
if direction > 0:
direction = 1
elif direction < 0:
direction = -1
else:
raise ValueError("direction {} is undefined".format(direction))
self.fields_sort.append(field_name, [direction, field_name, list(field_vals) if field_vals else field_vals])
return self |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_photometry_categorize'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '13', '22', '31', '39', '45', '62', '66', '70', '87', '91', '115', '189']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'string', 'children': [], 'value': "'''Put every point in its category.\n levels must be sorted.'''"},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'asarray'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'asarray'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'ys'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '38', 'type': 'argument_list', 'children': []},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ys'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '48', 'type': 'call', 'children': ['49', '61']},{'id': '49', 'type': 'attribute', 'children': ['50', '60']},{'id': '50', 'type': 'subscript', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'ys'},{'id': '52', 'type': 'slice', 'children': ['53', '59']},{'id': '53', 'type': 'binary_operator', 'children': ['54', '58'], 'value': '//'},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'ys'},{'id': '58', 'type': 'integer', 'children': [], 'value': '2'},{'id': '59', 'type': 'colon', 'children': []},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'mean'},{'id': '61', 'type': 'argument_list', 'children': []},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'augmented_assignment', 'children': ['64', '65'], 'value': '/='},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '69', 'type': 'float', 'children': [], 'value': '1.0'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '73', 'type': 'call', 'children': ['74', '86']},{'id': '74', 'type': 'attribute', 'children': ['75', '85']},{'id': '75', 'type': 'subscript', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'ys'},{'id': '77', 'type': 'slice', 'children': ['78', '84']},{'id': '78', 'type': 'binary_operator', 'children': ['79', '83'], 'value': '//'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'ys'},{'id': '83', 'type': 'integer', 'children': [], 'value': '2'},{'id': '84', 'type': 'colon', 'children': []},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'std'},{'id': '86', 'type': 'argument_list', 'children': []},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'assignment', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '90', 'type': 'list', 'children': [], 'value': '[]'},{'id': '91', 'type': 'if_statement', 'children': ['92', '95']},{'id': '92', 'type': 'comparison_operator', 'children': ['93', '94'], 'value': 'is'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '94', 'type': 'None', 'children': []},{'id': '95', 'type': 'block', 'children': ['96']},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '108']},{'id': '103', 'type': 'attribute', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'moves'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'binary_operator', 'children': ['110', '114'], 'value': '+'},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '114', 'type': 'integer', 'children': [], 'value': '1'},{'id': '115', 'type': 'for_statement', 'children': ['116', '119', '124', '174']},{'id': '116', 'type': 'pattern_list', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '121', 'type': 'argument_list', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '124', 'type': 'block', 'children': ['125', '131']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'indc'},{'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': '<'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '131', 'type': 'if_statement', 'children': ['132', '137']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'indc'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '136', 'type': 'argument_list', 'children': []},{'id': '137', 'type': 'block', 'children': ['138', '144', '150', '160', '167']},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'x1'},{'id': '141', 'type': 'subscript', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'indc'},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'y1'},{'id': '147', 'type': 'subscript', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'indc'},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'call', 'children': ['152', '155']},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'tuple', 'children': ['157', '158', '159']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'x1'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'y1'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '163', 'type': 'subscript', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '165', 'type': 'unary_operator', 'children': ['166'], 'value': '~'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'indc'},{'id': '167', 'type': 'expression_statement', 'children': ['168']},{'id': '168', 'type': 'assignment', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '170', 'type': 'subscript', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '172', 'type': 'unary_operator', 'children': ['173'], 'value': '~'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'indc'},{'id': '174', 'type': 'else_clause', 'children': ['175']},{'id': '175', 'type': 'block', 'children': ['176']},{'id': '176', 'type': 'expression_statement', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '181']},{'id': '178', 'type': 'attribute', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '181', 'type': 'argument_list', 'children': ['182']},{'id': '182', 'type': 'tuple', 'children': ['183', '184', '185']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '185', 'type': 'subscript', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '187', 'type': 'unary_operator', 'children': ['188'], 'value': '-'},{'id': '188', 'type': 'integer', 'children': [], 'value': '1'},{'id': '189', 'type': 'return_statement', 'children': ['190']},{'id': '190', 'type': 'expression_list', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '192', 'type': 'tuple', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 's'} | def check_photometry_categorize(x, y, levels, tags=None):
'''Put every point in its category.
levels must be sorted.'''
x = numpy.asarray(x)
y = numpy.asarray(y)
ys = y.copy()
ys.sort()
m = ys[len(ys) // 2:].mean()
y /= m
m = 1.0
s = ys[len(ys) // 2:].std()
result = []
if tags is None:
tags = list(six.moves.range(len(levels) + 1))
for l, t in zip(levels, tags):
indc = y < l
if indc.any():
x1 = x[indc]
y1 = y[indc]
result.append((x1, y1, t))
x = x[~indc]
y = y[~indc]
else:
result.append((x, y, tags[-1]))
return result, (m, s) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_normalize_sort_SQL'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'sort_dir_str'},{'id': '8', 'type': 'block', 'children': ['9', '13', '45', '60', '64', '92', '99', '108']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'fvi'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'if_statement', 'children': ['14', '17', '29']},{'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': '=='},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort_dir_str'},{'id': '16', 'type': 'string', 'children': [], 'value': "'ASC'"},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'fvi'},{'id': '21', 'type': 'generator_expression', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '23', 'type': 'for_in_clause', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '29', 'type': 'else_clause', 'children': ['30']},{'id': '30', 'type': 'block', 'children': ['31']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'fvi'},{'id': '34', 'type': 'generator_expression', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '36', 'type': 'for_in_clause', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'field_vals'},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'query_sort_str'},{'id': '48', 'type': 'list', 'children': ['49'], 'value': "[' CASE {}'.format(self._normalize_name(field_name))]"},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'string', 'children': [], 'value': "' CASE {}'"},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '57', 'type': 'identifier', 'children': [], 'value': '_normalize_name'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'query_args'},{'id': '63', 'type': 'list', 'children': [], 'value': '[]'},{'id': '64', 'type': 'for_statement', 'children': ['65', '68', '69']},{'id': '65', 'type': 'pattern_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'fvi'},{'id': '69', 'type': 'block', 'children': ['70', '85']},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'query_sort_str'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'string', 'children': [], 'value': "' WHEN {} THEN {}'"},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '80', 'type': 'argument_list', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'val_placeholder'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'query_args'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'query_sort_str'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'string', 'children': [], 'value': "' END'"},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'query_sort_str'},{'id': '102', 'type': 'call', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'query_sort_str'},{'id': '108', 'type': 'return_statement', 'children': ['109']},{'id': '109', 'type': 'expression_list', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'query_sort_str'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'query_args'} | def _normalize_sort_SQL(self, field_name, field_vals, sort_dir_str):
fvi = None
if sort_dir_str == 'ASC':
fvi = (t for t in enumerate(field_vals))
else:
fvi = (t for t in enumerate(reversed(field_vals)))
query_sort_str = [' CASE {}'.format(self._normalize_name(field_name))]
query_args = []
for i, v in fvi:
query_sort_str.append(' WHEN {} THEN {}'.format(self.val_placeholder, i))
query_args.append(v)
query_sort_str.append(' END')
query_sort_str = "\n".join(query_sort_str)
return query_sort_str, query_args |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_process'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '6', 'type': 'block', 'children': ['7', '19', '30', '49', '58']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '12']},{'id': '9', 'type': 'pattern_list', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'mlh'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'mlw'},{'id': '12', 'type': 'expression_list', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'max_line_height'},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'max_line_width'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '22', 'type': 'call', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'astype'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'uint32'},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '33', 'type': 'binary_operator', 'children': ['34', '44'], 'value': '+'},{'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '*'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'mlw'},{'id': '36', 'type': '()', 'children': ['37']},{'id': '37', 'type': 'binary_operator', 'children': ['38', '43'], 'value': '//'},{'id': '38', 'type': 'subscript', 'children': ['39', '40', '42']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '40', 'type': 'slice', 'children': ['41']},{'id': '41', 'type': 'colon', 'children': []},{'id': '42', 'type': 'integer', 'children': [], 'value': '1'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'mlh'},{'id': '44', 'type': 'subscript', 'children': ['45', '46', '48']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '46', 'type': 'slice', 'children': ['47']},{'id': '47', 'type': 'colon', 'children': []},{'id': '48', 'type': 'integer', 'children': [], 'value': '0'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'sort_order'},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '56', 'type': 'argument_list', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '58', 'type': 'return_statement', 'children': ['59']},{'id': '59', 'type': 'subscript', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'segments'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'sort_order'} | def _process(self, segments):
mlh, mlw = self.max_line_height, self.max_line_width
s = segments.astype(numpy.uint32)
order = mlw * (s[:, 1] // mlh) + s[:, 0]
sort_order = numpy.argsort(order)
return segments[sort_order] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'flatten'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'rho'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'pval'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'sortby'},{'id': '8', 'type': 'string', 'children': [], 'value': '"cor"'},{'id': '9', 'type': 'block', 'children': ['10', '18', '30', '63', '80', '133']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '13', 'type': 'subscript', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'rho'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '17', 'type': 'integer', 'children': [], 'value': '0'},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'triu_indices'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '29', 'type': 'integer', 'children': [], 'value': '1'},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'pd'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'DataFrame'},{'id': '37', 'type': 'argument_list', 'children': ['38', '45']},{'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '40', 'type': 'list', 'children': ['41', '42', '43', '44'], 'value': "['i', 'j', 'cor', 'pval']"},{'id': '41', 'type': 'string', 'children': [], 'value': "'i'"},{'id': '42', 'type': 'string', 'children': [], 'value': "'j'"},{'id': '43', 'type': 'string', 'children': [], 'value': "'cor'"},{'id': '44', 'type': 'string', 'children': [], 'value': "'pval'"},{'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '47', 'type': 'subscript', 'children': ['48', '51', '54', '57', '60']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'c_'},{'id': '51', 'type': 'subscript', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '53', 'type': 'integer', 'children': [], 'value': '0'},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '56', 'type': 'integer', 'children': [], 'value': '1'},{'id': '57', 'type': 'subscript', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'rho'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'pval'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'idx'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '70']},{'id': '65', 'type': 'subscript', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '67', 'type': 'list', 'children': ['68', '69'], 'value': '[\'i\', "j"]'},{'id': '68', 'type': 'string', 'children': [], 'value': "'i'"},{'id': '69', 'type': 'string', 'children': [], 'value': '"j"'},{'id': '70', 'type': 'call', 'children': ['71', '78']},{'id': '71', 'type': 'attribute', 'children': ['72', '77']},{'id': '72', 'type': 'subscript', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '74', 'type': 'list', 'children': ['75', '76'], 'value': '[\'i\', "j"]'},{'id': '75', 'type': 'string', 'children': [], 'value': "'i'"},{'id': '76', 'type': 'string', 'children': [], 'value': '"j"'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'astype'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '80', 'type': 'if_statement', 'children': ['81', '84', '113']},{'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': '=='},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'sortby'},{'id': '83', 'type': 'string', 'children': [], 'value': '"cor"'},{'id': '84', 'type': 'block', 'children': ['85', '98']},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '90']},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '89', 'type': 'string', 'children': [], 'value': "'abscor'"},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'subscript', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '97', 'type': 'string', 'children': [], 'value': "'cor'"},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'sort_values'},{'id': '103', 'type': 'argument_list', 'children': ['104', '107', '110']},{'id': '104', 'type': 'keyword_argument', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '106', 'type': 'string', 'children': [], 'value': "'abscor'"},{'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'inplace'},{'id': '109', 'type': 'True', 'children': []},{'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '112', 'type': 'False', 'children': []},{'id': '113', 'type': 'elif_clause', 'children': ['114', '117']},{'id': '114', 'type': 'comparison_operator', 'children': ['115', '116'], 'value': '=='},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'sortby'},{'id': '116', 'type': 'string', 'children': [], 'value': '"pval"'},{'id': '117', 'type': 'block', 'children': ['118']},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'call', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'sort_values'},{'id': '123', 'type': 'argument_list', 'children': ['124', '127', '130']},{'id': '124', 'type': 'keyword_argument', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '126', 'type': 'string', 'children': [], 'value': "'pval'"},{'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'inplace'},{'id': '129', 'type': 'True', 'children': []},{'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '132', 'type': 'True', 'children': []},{'id': '133', 'type': 'return_statement', 'children': ['134']},{'id': '134', 'type': 'subscript', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'tab'},{'id': '136', 'type': 'list', 'children': ['137', '138', '139', '140'], 'value': '["i", "j", "cor", "pval"]'},{'id': '137', 'type': 'string', 'children': [], 'value': '"i"'},{'id': '138', 'type': 'string', 'children': [], 'value': '"j"'},{'id': '139', 'type': 'string', 'children': [], 'value': '"cor"'},{'id': '140', 'type': 'string', 'children': [], 'value': '"pval"'} | def flatten(rho, pval, sortby="cor"):
n = rho.shape[0]
idx = np.triu_indices(n, k=1)
tab = pd.DataFrame(
columns=['i', 'j', 'cor', 'pval'],
data=np.c_[idx[0], idx[1], rho[idx], pval[idx]])
tab[['i', "j"]] = tab[['i', "j"]].astype(int)
if sortby == "cor":
tab['abscor'] = np.abs(tab['cor'])
tab.sort_values(by='abscor', inplace=True, ascending=False)
elif sortby == "pval":
tab.sort_values(by='pval', inplace=True, ascending=True)
return tab[["i", "j", "cor", "pval"]] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'has_code'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'state'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'incorrect_msg'},{'id': '8', 'type': 'string', 'children': [], 'value': '"The checker expected to find `{{text}}` in your command."'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'fixed'},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '19', '34', '60']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'stu_code'},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'state'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'student_code'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '22', 'type': 'conditional_expression', 'children': ['23', '26', '27'], 'value': 'if'},{'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'in'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'stu_code'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'fixed'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'stu_code'},{'id': '34', 'type': 'if_statement', 'children': ['35', '37']},{'id': '35', 'type': 'not_operator', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '37', 'type': 'block', 'children': ['38', '53']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': '_msg'},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'state'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'build_message'},{'id': '45', 'type': 'argument_list', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'incorrect_msg'},{'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'fmt_kwargs'},{'id': '49', 'type': 'dictionary', 'children': ['50']},{'id': '50', 'type': 'pair', 'children': ['51', '52']},{'id': '51', 'type': 'string', 'children': [], 'value': "'text'"},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'state'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'do_test'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': '_msg'},{'id': '60', 'type': 'return_statement', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'state'} | def has_code(state, text, incorrect_msg="The checker expected to find `{{text}}` in your command.", fixed=False):
stu_code = state.student_code
res = text in stu_code if fixed else re.search(text, stu_code)
if not res:
_msg = state.build_message(incorrect_msg, fmt_kwargs={ 'text': text })
state.do_test(_msg)
return state |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'topports'},{'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'sort_by'},{'id': '6', 'type': 'string', 'children': [], 'value': "'records'"},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '9', 'type': 'integer', 'children': [], 'value': '10'},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'return_format'},{'id': '15', 'type': 'None', 'children': []},{'id': '16', 'type': 'block', 'children': ['17', '32', '67']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'list', 'children': ['26', '27', '28'], 'value': "['topports', sort_by, str(limit)]"},{'id': '26', 'type': 'string', 'children': [], 'value': "'topports'"},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'sort_by'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '32', 'type': 'if_statement', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '34', 'type': 'block', 'children': ['35']},{'id': '35', 'type': 'try_statement', 'children': ['36', '53']},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'list', 'children': ['46', '47'], 'value': '[uri, date.strftime("%Y-%m-%d")]'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'strftime'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'string', 'children': [], 'value': '"%Y-%m-%d"'},{'id': '53', 'type': 'except_clause', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'AttributeError'},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'list', 'children': ['65', '66'], 'value': '[uri, date]'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '67', 'type': 'return_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': '_get'},{'id': '70', 'type': 'argument_list', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'uri'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'return_format'} | def topports(sort_by='records', limit=10, date=None, return_format=None):
uri = '/'.join(['topports', sort_by, str(limit)])
if date:
try:
uri = '/'.join([uri, date.strftime("%Y-%m-%d")])
except AttributeError:
uri = '/'.join([uri, date])
return _get(uri, return_format) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'all_nodes_that_receive'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'service_configuration'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'run_only'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'deploy_to_only'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '21', '32', '40', '51', '60', '88']},{'id': '15', 'type': 'assert_statement', 'children': ['16']},{'id': '16', 'type': 'not_operator', 'children': ['17']},{'id': '17', 'type': '()', 'children': ['18']},{'id': '18', 'type': 'boolean_operator', 'children': ['19', '20'], 'value': 'and'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'run_only'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'deploy_to_only'},{'id': '21', 'type': 'if_statement', 'children': ['22', '25']},{'id': '22', 'type': 'comparison_operator', 'children': ['23', '24'], 'value': 'is'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'service_configuration'},{'id': '24', 'type': 'None', 'children': []},{'id': '25', 'type': 'block', 'children': ['26']},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'service_configuration'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'read_services_configuration'},{'id': '31', 'type': 'argument_list', 'children': []},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'runs_on'},{'id': '35', 'type': 'subscript', 'children': ['36', '39']},{'id': '36', 'type': 'subscript', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'service_configuration'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '39', 'type': 'string', 'children': [], 'value': "'runs_on'"},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'deployed_to'},{'id': '43', 'type': 'call', 'children': ['44', '49']},{'id': '44', 'type': 'attribute', 'children': ['45', '48']},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'service_configuration'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'service'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'string', 'children': [], 'value': "'deployed_to'"},{'id': '51', 'type': 'if_statement', 'children': ['52', '55']},{'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': 'is'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'deployed_to'},{'id': '54', 'type': 'None', 'children': []},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'deployed_to'},{'id': '59', 'type': 'list', 'children': [], 'value': '[]'},{'id': '60', 'type': 'if_statement', 'children': ['61', '62', '67', '74']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'run_only'},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'runs_on'},{'id': '67', 'type': 'elif_clause', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'deploy_to_only'},{'id': '69', 'type': 'block', 'children': ['70']},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'deployed_to'},{'id': '74', 'type': 'else_clause', 'children': ['75']},{'id': '75', 'type': 'block', 'children': ['76']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '79', 'type': 'binary_operator', 'children': ['80', '84'], 'value': '|'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'runs_on'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'deployed_to'},{'id': '88', 'type': 'return_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'result'} | def all_nodes_that_receive(service, service_configuration=None, run_only=False, deploy_to_only=False):
assert not (run_only and deploy_to_only)
if service_configuration is None:
service_configuration = read_services_configuration()
runs_on = service_configuration[service]['runs_on']
deployed_to = service_configuration[service].get('deployed_to')
if deployed_to is None:
deployed_to = []
if run_only:
result = runs_on
elif deploy_to_only:
result = deployed_to
else:
result = set(runs_on) | set(deployed_to)
return list(sorted(result)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_cuthill_mckee'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'vertices'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'vertices_neighbours'},{'id': '6', 'type': 'block', 'children': ['7', '25', '41', '49', '54', '62', '129']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'vertices_degrees'},{'id': '10', 'type': 'dictionary_comprehension', 'children': ['11', '22']},{'id': '11', 'type': 'pair', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'itervalues'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'subscript', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'vertices_neighbours'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '22', 'type': 'for_in_clause', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'vertices'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'peripheral_vertex'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'vertices'},{'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '34', 'type': '()', 'children': ['35']},{'id': '35', 'type': 'lambda', 'children': ['36', '38']},{'id': '36', 'type': 'lambda_parameters', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'vertices_degrees'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'visited'},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'list', 'children': ['48'], 'value': '[peripheral_vertex]'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'peripheral_vertex'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'cm_order'},{'id': '52', 'type': 'list', 'children': ['53'], 'value': '[peripheral_vertex]'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'peripheral_vertex'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'previous_layer'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'list', 'children': ['61'], 'value': '[peripheral_vertex]'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'peripheral_vertex'},{'id': '62', 'type': 'while_statement', 'children': ['63', '72']},{'id': '63', 'type': 'comparison_operator', 'children': ['64', '68'], 'value': '<'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'cm_order'},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'vertices'},{'id': '72', 'type': 'block', 'children': ['73', '79', '92', '99', '106', '125']},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'adjacent'},{'id': '76', 'type': 'call', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '78', 'type': 'argument_list', 'children': []},{'id': '79', 'type': 'for_statement', 'children': ['80', '81', '82']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'vertex'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'previous_layer'},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'adjacent'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'subscript', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'vertices_neighbours'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'vertex'},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'adjacent'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'difference_update'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'visited'},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'call', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'visited'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'adjacent'},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'call', 'children': ['108', '111']},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'cm_order'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'call', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '114', 'type': 'argument_list', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'adjacent'},{'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '118', 'type': '()', 'children': ['119']},{'id': '119', 'type': 'lambda', 'children': ['120', '122']},{'id': '120', 'type': 'lambda_parameters', 'children': ['121']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '122', 'type': 'subscript', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'vertices_degrees'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'previous_layer'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'adjacent'},{'id': '129', 'type': 'return_statement', 'children': ['130']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'cm_order'} | def _cuthill_mckee(vertices, vertices_neighbours):
vertices_degrees = {v: sum(itervalues(vertices_neighbours[v]))
for v in vertices}
peripheral_vertex = min(vertices, key=(lambda v: vertices_degrees[v]))
visited = set([peripheral_vertex])
cm_order = [peripheral_vertex]
previous_layer = set([peripheral_vertex])
while len(cm_order) < len(vertices):
adjacent = set()
for vertex in previous_layer:
adjacent.update(vertices_neighbours[vertex])
adjacent.difference_update(visited)
visited.update(adjacent)
cm_order.extend(sorted(adjacent, key=(lambda v: vertices_degrees[v])))
previous_layer = adjacent
return cm_order |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'write_csv'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '23', '36', '49', '60', '68', '74']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sort_sections'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'list', 'children': ['16', '17', '18', '19', '20', '21', '22'], 'value': "['Root', 'Contacts', 'Documentation', 'References', 'Resources', 'Citations', 'Schema']"},{'id': '16', 'type': 'string', 'children': [], 'value': "'Root'"},{'id': '17', 'type': 'string', 'children': [], 'value': "'Contacts'"},{'id': '18', 'type': 'string', 'children': [], 'value': "'Documentation'"},{'id': '19', 'type': 'string', 'children': [], 'value': "'References'"},{'id': '20', 'type': 'string', 'children': [], 'value': "'Resources'"},{'id': '21', 'type': 'string', 'children': [], 'value': "'Citations'"},{'id': '22', 'type': 'string', 'children': [], 'value': "'Schema'"},{'id': '23', 'type': 'if_statement', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '36', 'type': 'if_statement', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'abstract'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'abstract'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '52', 'type': 'call', 'children': ['53', '58']},{'id': '53', 'type': 'attribute', 'children': ['54', '57']},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '56', 'type': 'string', 'children': [], 'value': "'Root'"},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'get_or_new_term'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'string', 'children': [], 'value': "'Root.Modified'"},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'datetime_now'},{'id': '67', 'type': 'argument_list', 'children': []},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'sort_by_term'},{'id': '73', 'type': 'argument_list', 'children': []},{'id': '74', 'type': 'return_statement', 'children': ['75']},{'id': '75', 'type': 'call', 'children': ['76', '81']},{'id': '76', 'type': 'attribute', 'children': ['77', '80']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'super'},{'id': '79', 'type': 'argument_list', 'children': []},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'write_csv'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'path'} | def write_csv(self, path=None):
self.sort_sections(['Root', 'Contacts', 'Documentation', 'References', 'Resources', 'Citations', 'Schema'])
if self.description:
self.description = self.description
if self.abstract:
self.description = self.abstract
t = self['Root'].get_or_new_term('Root.Modified')
t.value = datetime_now()
self.sort_by_term()
return super().write_csv(str(path)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'validate_functions'},{'id': '3', 'type': 'parameters', 'children': ['4', '8']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'BELAst'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'bo'},{'id': '9', 'type': 'block', 'children': ['10', '99', '118']},{'id': '10', 'type': 'if_statement', 'children': ['11', '16']},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'Function'},{'id': '16', 'type': 'block', 'children': ['17', '24', '40', '46', '59']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'string', 'children': [], 'value': 'f"Validating: {ast.name}, {ast.function_type}, {ast.args}"'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'function_signatures'},{'id': '27', 'type': 'subscript', 'children': ['28', '39']},{'id': '28', 'type': 'subscript', 'children': ['29', '36']},{'id': '29', 'type': 'subscript', 'children': ['30', '35']},{'id': '30', 'type': 'subscript', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'bo'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'spec'},{'id': '34', 'type': 'string', 'children': [], 'value': '"functions"'},{'id': '35', 'type': 'string', 'children': [], 'value': '"signatures"'},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '39', 'type': 'string', 'children': [], 'value': '"signatures"'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'function_name'},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '51']},{'id': '48', 'type': 'tuple_pattern', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'valid_function'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'messages'},{'id': '51', 'type': 'call', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'check_function_args'},{'id': '53', 'type': 'argument_list', 'children': ['54', '57', '58']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'function_signatures'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'function_name'},{'id': '59', 'type': 'if_statement', 'children': ['60', '62']},{'id': '60', 'type': 'not_operator', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'valid_function'},{'id': '62', 'type': 'block', 'children': ['63', '72', '93']},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'string', 'children': [], 'value': '", "'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'messages'},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '79']},{'id': '74', 'type': 'attribute', 'children': ['75', '78']},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'bo'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'validation_messages'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'tuple', 'children': ['81', '82']},{'id': '81', 'type': 'string', 'children': [], 'value': '"ERROR"'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'string', 'children': [], 'value': '"Invalid BEL Statement function {} - problem with function signatures: {}"'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '86', 'type': 'argument_list', 'children': ['87', '92']},{'id': '87', 'type': 'call', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'to_string'},{'id': '91', 'type': 'argument_list', 'children': []},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '93', 'type': 'expression_statement', 'children': ['94']},{'id': '94', 'type': 'assignment', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'bo'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'parse_valid'},{'id': '98', 'type': 'False', 'children': []},{'id': '99', 'type': 'if_statement', 'children': ['100', '105']},{'id': '100', 'type': 'call', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '102', 'type': 'argument_list', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '104', 'type': 'string', 'children': [], 'value': '"args"'},{'id': '105', 'type': 'block', 'children': ['106']},{'id': '106', 'type': 'for_statement', 'children': ['107', '108', '111']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'ast'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '111', 'type': 'block', 'children': ['112']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'call', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'validate_functions'},{'id': '115', 'type': 'argument_list', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'arg'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'bo'},{'id': '118', 'type': 'return_statement', 'children': ['119']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'bo'} | def validate_functions(ast: BELAst, bo):
if isinstance(ast, Function):
log.debug(f"Validating: {ast.name}, {ast.function_type}, {ast.args}")
function_signatures = bo.spec["functions"]["signatures"][ast.name]["signatures"]
function_name = ast.name
(valid_function, messages) = check_function_args(
ast.args, function_signatures, function_name
)
if not valid_function:
message = ", ".join(messages)
bo.validation_messages.append(
(
"ERROR",
"Invalid BEL Statement function {} - problem with function signatures: {}".format(
ast.to_string(), message
),
)
)
bo.parse_valid = False
if hasattr(ast, "args"):
for arg in ast.args:
validate_functions(arg, bo)
return bo |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'hash_nanopub'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'generic_type', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'Mapping'},{'id': '9', 'type': 'type_parameter', 'children': ['10', '12']},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '12', 'type': 'type', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '14', 'type': 'type', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '16', 'type': 'block', 'children': ['17', '21', '42', '63', '190', '194', '279', '286', '293', '297', '343', '350', '357', '374']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '20', 'type': 'list', 'children': [], 'value': '[]'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'call', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '41']},{'id': '28', 'type': 'attribute', 'children': ['29', '40']},{'id': '29', 'type': 'call', 'children': ['30', '37']},{'id': '30', 'type': 'attribute', 'children': ['31', '36']},{'id': '31', 'type': 'subscript', 'children': ['32', '35']},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '34', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '35', 'type': 'string', 'children': [], 'value': '"type"'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '37', 'type': 'argument_list', 'children': ['38', '39']},{'id': '38', 'type': 'string', 'children': [], 'value': '"name"'},{'id': '39', 'type': 'string', 'children': [], 'value': '""'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '41', 'type': 'argument_list', 'children': []},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '62']},{'id': '49', 'type': 'attribute', 'children': ['50', '61']},{'id': '50', 'type': 'call', 'children': ['51', '58']},{'id': '51', 'type': 'attribute', 'children': ['52', '57']},{'id': '52', 'type': 'subscript', 'children': ['53', '56']},{'id': '53', 'type': 'subscript', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '55', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '56', 'type': 'string', 'children': [], 'value': '"type"'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '58', 'type': 'argument_list', 'children': ['59', '60']},{'id': '59', 'type': 'string', 'children': [], 'value': '"version"'},{'id': '60', 'type': 'string', 'children': [], 'value': '""'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'if_statement', 'children': ['64', '75', '122', '156']},{'id': '64', 'type': 'call', 'children': ['65', '72']},{'id': '65', 'type': 'attribute', 'children': ['66', '71']},{'id': '66', 'type': 'subscript', 'children': ['67', '70']},{'id': '67', 'type': 'subscript', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '69', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '70', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '72', 'type': 'argument_list', 'children': ['73', '74']},{'id': '73', 'type': 'string', 'children': [], 'value': '"database"'},{'id': '74', 'type': 'False', 'children': []},{'id': '75', 'type': 'block', 'children': ['76', '99']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '98']},{'id': '83', 'type': 'attribute', 'children': ['84', '97']},{'id': '84', 'type': 'call', 'children': ['85', '94']},{'id': '85', 'type': 'attribute', 'children': ['86', '93']},{'id': '86', 'type': 'subscript', 'children': ['87', '92']},{'id': '87', 'type': 'subscript', 'children': ['88', '91']},{'id': '88', 'type': 'subscript', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '90', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '91', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '92', 'type': 'string', 'children': [], 'value': '"database"'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '94', 'type': 'argument_list', 'children': ['95', '96']},{'id': '95', 'type': 'string', 'children': [], 'value': '"name"'},{'id': '96', 'type': 'string', 'children': [], 'value': '""'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '98', 'type': 'argument_list', 'children': []},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'call', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'call', 'children': ['106', '121']},{'id': '106', 'type': 'attribute', 'children': ['107', '120']},{'id': '107', 'type': 'call', 'children': ['108', '117']},{'id': '108', 'type': 'attribute', 'children': ['109', '116']},{'id': '109', 'type': 'subscript', 'children': ['110', '115']},{'id': '110', 'type': 'subscript', 'children': ['111', '114']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '113', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '114', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '115', 'type': 'string', 'children': [], 'value': '"database"'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '117', 'type': 'argument_list', 'children': ['118', '119']},{'id': '118', 'type': 'string', 'children': [], 'value': '"id"'},{'id': '119', 'type': 'string', 'children': [], 'value': '""'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '121', 'type': 'argument_list', 'children': []},{'id': '122', 'type': 'elif_clause', 'children': ['123', '134']},{'id': '123', 'type': 'call', 'children': ['124', '131']},{'id': '124', 'type': 'attribute', 'children': ['125', '130']},{'id': '125', 'type': 'subscript', 'children': ['126', '129']},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '128', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '129', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '131', 'type': 'argument_list', 'children': ['132', '133']},{'id': '132', 'type': 'string', 'children': [], 'value': '"uri"'},{'id': '133', 'type': 'False', 'children': []},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '155']},{'id': '142', 'type': 'attribute', 'children': ['143', '154']},{'id': '143', 'type': 'call', 'children': ['144', '151']},{'id': '144', 'type': 'attribute', 'children': ['145', '150']},{'id': '145', 'type': 'subscript', 'children': ['146', '149']},{'id': '146', 'type': 'subscript', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '148', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '149', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '151', 'type': 'argument_list', 'children': ['152', '153']},{'id': '152', 'type': 'string', 'children': [], 'value': '"uri"'},{'id': '153', 'type': 'string', 'children': [], 'value': '""'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '155', 'type': 'argument_list', 'children': []},{'id': '156', 'type': 'elif_clause', 'children': ['157', '168']},{'id': '157', 'type': 'call', 'children': ['158', '165']},{'id': '158', 'type': 'attribute', 'children': ['159', '164']},{'id': '159', 'type': 'subscript', 'children': ['160', '163']},{'id': '160', 'type': 'subscript', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '162', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '163', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '165', 'type': 'argument_list', 'children': ['166', '167']},{'id': '166', 'type': 'string', 'children': [], 'value': '"reference"'},{'id': '167', 'type': 'False', 'children': []},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'call', 'children': ['171', '174']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '174', 'type': 'argument_list', 'children': ['175']},{'id': '175', 'type': 'call', 'children': ['176', '189']},{'id': '176', 'type': 'attribute', 'children': ['177', '188']},{'id': '177', 'type': 'call', 'children': ['178', '185']},{'id': '178', 'type': 'attribute', 'children': ['179', '184']},{'id': '179', 'type': 'subscript', 'children': ['180', '183']},{'id': '180', 'type': 'subscript', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '182', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '183', 'type': 'string', 'children': [], 'value': '"citation"'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '185', 'type': 'argument_list', 'children': ['186', '187']},{'id': '186', 'type': 'string', 'children': [], 'value': '"reference"'},{'id': '187', 'type': 'string', 'children': [], 'value': '""'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '189', 'type': 'argument_list', 'children': []},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'assignment', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'assertions'},{'id': '193', 'type': 'list', 'children': [], 'value': '[]'},{'id': '194', 'type': 'for_statement', 'children': ['195', '196', '201']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '196', 'type': 'subscript', 'children': ['197', '200']},{'id': '197', 'type': 'subscript', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '199', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '200', 'type': 'string', 'children': [], 'value': '"assertions"'},{'id': '201', 'type': 'block', 'children': ['202', '218', '234']},{'id': '202', 'type': 'if_statement', 'children': ['203', '211']},{'id': '203', 'type': 'comparison_operator', 'children': ['204', '210'], 'value': 'is'},{'id': '204', 'type': 'call', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '208', 'type': 'argument_list', 'children': ['209']},{'id': '209', 'type': 'string', 'children': [], 'value': '"relation"'},{'id': '210', 'type': 'None', 'children': []},{'id': '211', 'type': 'block', 'children': ['212']},{'id': '212', 'type': 'expression_statement', 'children': ['213']},{'id': '213', 'type': 'assignment', 'children': ['214', '217']},{'id': '214', 'type': 'subscript', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '216', 'type': 'string', 'children': [], 'value': '"relation"'},{'id': '217', 'type': 'string', 'children': [], 'value': '""'},{'id': '218', 'type': 'if_statement', 'children': ['219', '227']},{'id': '219', 'type': 'comparison_operator', 'children': ['220', '226'], 'value': 'is'},{'id': '220', 'type': 'call', 'children': ['221', '224']},{'id': '221', 'type': 'attribute', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '224', 'type': 'argument_list', 'children': ['225']},{'id': '225', 'type': 'string', 'children': [], 'value': '"object"'},{'id': '226', 'type': 'None', 'children': []},{'id': '227', 'type': 'block', 'children': ['228']},{'id': '228', 'type': 'expression_statement', 'children': ['229']},{'id': '229', 'type': 'assignment', 'children': ['230', '233']},{'id': '230', 'type': 'subscript', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '232', 'type': 'string', 'children': [], 'value': '"object"'},{'id': '233', 'type': 'string', 'children': [], 'value': '""'},{'id': '234', 'type': 'expression_statement', 'children': ['235']},{'id': '235', 'type': 'call', 'children': ['236', '239']},{'id': '236', 'type': 'attribute', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'assertions'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '239', 'type': 'argument_list', 'children': ['240']},{'id': '240', 'type': 'call', 'children': ['241', '278']},{'id': '241', 'type': 'attribute', 'children': ['242', '277']},{'id': '242', 'type': 'call', 'children': ['243', '246']},{'id': '243', 'type': 'attribute', 'children': ['244', '245']},{'id': '244', 'type': 'string', 'children': [], 'value': '" "'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '246', 'type': 'argument_list', 'children': ['247']},{'id': '247', 'type': 'tuple', 'children': ['248', '255', '266']},{'id': '248', 'type': 'call', 'children': ['249', '254']},{'id': '249', 'type': 'attribute', 'children': ['250', '253']},{'id': '250', 'type': 'subscript', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '252', 'type': 'string', 'children': [], 'value': '"subject"'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '254', 'type': 'argument_list', 'children': []},{'id': '255', 'type': 'call', 'children': ['256', '265']},{'id': '256', 'type': 'attribute', 'children': ['257', '264']},{'id': '257', 'type': 'call', 'children': ['258', '261']},{'id': '258', 'type': 'attribute', 'children': ['259', '260']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '261', 'type': 'argument_list', 'children': ['262', '263']},{'id': '262', 'type': 'string', 'children': [], 'value': '"relation"'},{'id': '263', 'type': 'string', 'children': [], 'value': '""'},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '265', 'type': 'argument_list', 'children': []},{'id': '266', 'type': 'call', 'children': ['267', '276']},{'id': '267', 'type': 'attribute', 'children': ['268', '275']},{'id': '268', 'type': 'call', 'children': ['269', '272']},{'id': '269', 'type': 'attribute', 'children': ['270', '271']},{'id': '270', 'type': 'identifier', 'children': [], 'value': 'assertion'},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '272', 'type': 'argument_list', 'children': ['273', '274']},{'id': '273', 'type': 'string', 'children': [], 'value': '"object"'},{'id': '274', 'type': 'string', 'children': [], 'value': '""'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '276', 'type': 'argument_list', 'children': []},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '278', 'type': 'argument_list', 'children': []},{'id': '279', 'type': 'expression_statement', 'children': ['280']},{'id': '280', 'type': 'assignment', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'assertions'},{'id': '282', 'type': 'call', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '284', 'type': 'argument_list', 'children': ['285']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'assertions'},{'id': '286', 'type': 'expression_statement', 'children': ['287']},{'id': '287', 'type': 'call', 'children': ['288', '291']},{'id': '288', 'type': 'attribute', 'children': ['289', '290']},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '291', 'type': 'argument_list', 'children': ['292']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'assertions'},{'id': '293', 'type': 'expression_statement', 'children': ['294']},{'id': '294', 'type': 'assignment', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '296', 'type': 'list', 'children': [], 'value': '[]'},{'id': '297', 'type': 'for_statement', 'children': ['298', '299', '304']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'anno'},{'id': '299', 'type': 'subscript', 'children': ['300', '303']},{'id': '300', 'type': 'subscript', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'nanopub'},{'id': '302', 'type': 'string', 'children': [], 'value': '"nanopub"'},{'id': '303', 'type': 'string', 'children': [], 'value': '"annotations"'},{'id': '304', 'type': 'block', 'children': ['305']},{'id': '305', 'type': 'expression_statement', 'children': ['306']},{'id': '306', 'type': 'call', 'children': ['307', '310']},{'id': '307', 'type': 'attribute', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '310', 'type': 'argument_list', 'children': ['311']},{'id': '311', 'type': 'call', 'children': ['312', '342']},{'id': '312', 'type': 'attribute', 'children': ['313', '341']},{'id': '313', 'type': 'call', 'children': ['314', '317']},{'id': '314', 'type': 'attribute', 'children': ['315', '316']},{'id': '315', 'type': 'string', 'children': [], 'value': '" "'},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '317', 'type': 'argument_list', 'children': ['318']},{'id': '318', 'type': 'tuple', 'children': ['319', '330']},{'id': '319', 'type': 'call', 'children': ['320', '329']},{'id': '320', 'type': 'attribute', 'children': ['321', '328']},{'id': '321', 'type': 'call', 'children': ['322', '325']},{'id': '322', 'type': 'attribute', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'anno'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '325', 'type': 'argument_list', 'children': ['326', '327']},{'id': '326', 'type': 'string', 'children': [], 'value': '"type"'},{'id': '327', 'type': 'string', 'children': [], 'value': '""'},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '329', 'type': 'argument_list', 'children': []},{'id': '330', 'type': 'call', 'children': ['331', '340']},{'id': '331', 'type': 'attribute', 'children': ['332', '339']},{'id': '332', 'type': 'call', 'children': ['333', '336']},{'id': '333', 'type': 'attribute', 'children': ['334', '335']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'anno'},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '336', 'type': 'argument_list', 'children': ['337', '338']},{'id': '337', 'type': 'string', 'children': [], 'value': '"id"'},{'id': '338', 'type': 'string', 'children': [], 'value': '""'},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '340', 'type': 'argument_list', 'children': []},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '342', 'type': 'argument_list', 'children': []},{'id': '343', 'type': 'expression_statement', 'children': ['344']},{'id': '344', 'type': 'assignment', 'children': ['345', '346']},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '346', 'type': 'call', 'children': ['347', '348']},{'id': '347', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '348', 'type': 'argument_list', 'children': ['349']},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '350', 'type': 'expression_statement', 'children': ['351']},{'id': '351', 'type': 'call', 'children': ['352', '355']},{'id': '352', 'type': 'attribute', 'children': ['353', '354']},{'id': '353', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '354', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '355', 'type': 'argument_list', 'children': ['356']},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '357', 'type': 'expression_statement', 'children': ['358']},{'id': '358', 'type': 'assignment', 'children': ['359', '360']},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'np_string'},{'id': '360', 'type': 'call', 'children': ['361', '364']},{'id': '361', 'type': 'attribute', 'children': ['362', '363']},{'id': '362', 'type': 'string', 'children': [], 'value': '" "'},{'id': '363', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '364', 'type': 'argument_list', 'children': ['365']},{'id': '365', 'type': 'list_comprehension', 'children': ['366', '371']},{'id': '366', 'type': 'call', 'children': ['367', '370']},{'id': '367', 'type': 'attribute', 'children': ['368', '369']},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '370', 'type': 'argument_list', 'children': []},{'id': '371', 'type': 'for_in_clause', 'children': ['372', '373']},{'id': '372', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'hash_list'},{'id': '374', 'type': 'return_statement', 'children': ['375']},{'id': '375', 'type': 'call', 'children': ['376', '379']},{'id': '376', 'type': 'attribute', 'children': ['377', '378']},{'id': '377', 'type': 'string', 'children': [], 'value': '"{:x}"'},{'id': '378', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '379', 'type': 'argument_list', 'children': ['380']},{'id': '380', 'type': 'call', 'children': ['381', '382']},{'id': '381', 'type': 'identifier', 'children': [], 'value': 'CityHash64'},{'id': '382', 'type': 'argument_list', 'children': ['383']},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'np_string'} | def hash_nanopub(nanopub: Mapping[str, Any]) -> str:
hash_list = []
hash_list.append(nanopub["nanopub"]["type"].get("name", "").strip())
hash_list.append(nanopub["nanopub"]["type"].get("version", "").strip())
if nanopub["nanopub"]["citation"].get("database", False):
hash_list.append(
nanopub["nanopub"]["citation"]["database"].get("name", "").strip()
)
hash_list.append(
nanopub["nanopub"]["citation"]["database"].get("id", "").strip()
)
elif nanopub["nanopub"]["citation"].get("uri", False):
hash_list.append(nanopub["nanopub"]["citation"].get("uri", "").strip())
elif nanopub["nanopub"]["citation"].get("reference", False):
hash_list.append(nanopub["nanopub"]["citation"].get("reference", "").strip())
assertions = []
for assertion in nanopub["nanopub"]["assertions"]:
if assertion.get("relation") is None:
assertion["relation"] = ""
if assertion.get("object") is None:
assertion["object"] = ""
assertions.append(
" ".join(
(
assertion["subject"].strip(),
assertion.get("relation", "").strip(),
assertion.get("object", "").strip(),
)
).strip()
)
assertions = sorted(assertions)
hash_list.extend(assertions)
annotations = []
for anno in nanopub["nanopub"]["annotations"]:
annotations.append(
" ".join((anno.get("type", "").strip(), anno.get("id", "").strip())).strip()
)
annotations = sorted(annotations)
hash_list.extend(annotations)
np_string = " ".join([l.lower() for l in hash_list])
return "{:x}".format(CityHash64(np_string)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'build_listing'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '97', '117']},{'id': '6', 'type': 'function_definition', 'children': ['7', '8', '11']},{'id': '7', 'type': 'function_name', 'children': [], 'value': 'func_entry'},{'id': '8', 'type': 'parameters', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '11', 'type': 'block', 'children': ['12', '24', '50', '70']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '18']},{'id': '14', 'type': 'pattern_list', 'children': ['15', '16', '17']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'varargs'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'defaults'},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': '_get_arg_spec'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '27', 'type': 'list_comprehension', 'children': ['28', '43', '46']},{'id': '28', 'type': 'dictionary', 'children': ['29', '35', '40']},{'id': '29', 'type': 'pair', 'children': ['30', '31']},{'id': '30', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '35', 'type': 'pair', 'children': ['36', '37']},{'id': '36', 'type': 'string', 'children': [], 'value': "'optional'"},{'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'in'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'defaults'},{'id': '40', 'type': 'pair', 'children': ['41', '42']},{'id': '41', 'type': 'string', 'children': [], 'value': "'vararg'"},{'id': '42', 'type': 'False', 'children': []},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '46', 'type': 'if_clause', 'children': ['47']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': '!='},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '49', 'type': 'string', 'children': [], 'value': "'ctx'"},{'id': '50', 'type': 'if_statement', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'varargs'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'augmented_assignment', 'children': ['55', '56'], 'value': '+='},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '56', 'type': 'list', 'children': ['57'], 'value': "[{'name': str(varargs), 'optional': False, 'vararg': True}]"},{'id': '57', 'type': 'dictionary', 'children': ['58', '64', '67']},{'id': '58', 'type': 'pair', 'children': ['59', '60']},{'id': '59', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'varargs'},{'id': '64', 'type': 'pair', 'children': ['65', '66']},{'id': '65', 'type': 'string', 'children': [], 'value': "'optional'"},{'id': '66', 'type': 'False', 'children': []},{'id': '67', 'type': 'pair', 'children': ['68', '69']},{'id': '68', 'type': 'string', 'children': [], 'value': "'vararg'"},{'id': '69', 'type': 'True', 'children': []},{'id': '70', 'type': 'return_statement', 'children': ['71']},{'id': '71', 'type': 'dictionary', 'children': ['72', '82', '94']},{'id': '72', 'type': 'pair', 'children': ['73', '74']},{'id': '73', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'upper'},{'id': '81', 'type': 'argument_list', 'children': []},{'id': '82', 'type': 'pair', 'children': ['83', '84']},{'id': '83', 'type': 'string', 'children': [], 'value': "'description'"},{'id': '84', 'type': 'call', 'children': ['85', '93']},{'id': '85', 'type': 'attribute', 'children': ['86', '92']},{'id': '86', 'type': 'call', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '91', 'type': 'identifier', 'children': [], 'value': '__doc__'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '93', 'type': 'argument_list', 'children': []},{'id': '94', 'type': 'pair', 'children': ['95', '96']},{'id': '95', 'type': 'string', 'children': [], 'value': "'params'"},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'listing'},{'id': '100', 'type': 'list_comprehension', 'children': ['101', '106']},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'func_entry'},{'id': '103', 'type': 'argument_list', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'f_name'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '106', 'type': 'for_in_clause', 'children': ['107', '110']},{'id': '107', 'type': 'pattern_list', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'f_name'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '110', 'type': 'call', 'children': ['111', '116']},{'id': '111', 'type': 'attribute', 'children': ['112', '115']},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '114', 'type': 'identifier', 'children': [], 'value': '_functions'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '116', 'type': 'argument_list', 'children': []},{'id': '117', 'type': 'return_statement', 'children': ['118']},{'id': '118', 'type': 'call', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '120', 'type': 'argument_list', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'listing'},{'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '124', 'type': 'lambda', 'children': ['125', '127']},{'id': '125', 'type': 'lambda_parameters', 'children': ['126']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '127', 'type': 'subscript', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '129', 'type': 'string', 'children': [], 'value': "'name'"} | def build_listing(self):
def func_entry(name, func):
args, varargs, defaults = self._get_arg_spec(func)
params = [{'name': str(a), 'optional': a in defaults, 'vararg': False} for a in args if a != 'ctx']
if varargs:
params += [{'name': str(varargs), 'optional': False, 'vararg': True}]
return {'name': str(name.upper()),
'description': str(func.__doc__).strip(),
'params': params}
listing = [func_entry(f_name, f) for f_name, f in self._functions.items()]
return sorted(listing, key=lambda l: l['name']) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_url_qsl'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'raw_url'},{'id': '6', 'type': 'dictionary_splat_pattern', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '8', 'type': 'block', 'children': ['9', '16', '25']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'parsed_url'},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'urlparse'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'raw_url'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'qsl'},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'parse_qsl'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'parsed_url'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '25', 'type': 'return_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'cls'},{'id': '29', 'type': 'identifier', 'children': [], 'value': '_join_url'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'parsed_url'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'qsl'},{'id': '36', 'type': 'dictionary_splat', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'kwargs'} | def sort_url_qsl(cls, raw_url, **kwargs):
parsed_url = urlparse(raw_url)
qsl = parse_qsl(parsed_url.query)
return cls._join_url(parsed_url, sorted(qsl, **kwargs)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '23']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_sorted_series_files'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'startpath'},{'id': '7', 'type': 'string', 'children': [], 'value': '""'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'series_number'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'return_files_with_info'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '16', 'type': 'string', 'children': [], 'value': '"SliceLocation"'},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'return_files'},{'id': '19', 'type': 'True', 'children': []},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'remove_doubled_slice_locations'},{'id': '22', 'type': 'True', 'children': []},{'id': '23', 'type': 'block', 'children': ['24', '33', '52', '62', '74', '86', '90', '114', '118', '128', '138', '173']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '27', 'type': 'subscript', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'files_with_info'},{'id': '31', 'type': 'slice', 'children': ['32']},{'id': '32', 'type': 'colon', 'children': []},{'id': '33', 'type': 'if_statement', 'children': ['34', '37']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': 'is'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'series_number'},{'id': '36', 'type': 'None', 'children': []},{'id': '37', 'type': 'block', 'children': ['38']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '41', 'type': 'list_comprehension', 'children': ['42', '43', '46']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '46', 'type': 'if_clause', 'children': ['47']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '51'], 'value': '=='},{'id': '48', 'type': 'subscript', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '50', 'type': 'string', 'children': [], 'value': "'SeriesNumber'"},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'series_number'},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'sort_list_of_dicts'},{'id': '57', 'type': 'argument_list', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'binary_operator', 'children': ['69', '70'], 'value': '+'},{'id': '69', 'type': 'string', 'children': [], 'value': "'SeriesNumber: '"},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'series_number'},{'id': '74', 'type': 'if_statement', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'remove_doubled_slice_locations'},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '83', 'type': 'identifier', 'children': [], 'value': '_remove_doubled_slice_locations'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'filelist'},{'id': '89', 'type': 'list', 'children': [], 'value': '[]'},{'id': '90', 'type': 'for_statement', 'children': ['91', '92', '93']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'onefile'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '93', 'type': 'block', 'children': ['94']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'filelist'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'call', 'children': ['101', '106']},{'id': '101', 'type': 'attribute', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '106', 'type': 'argument_list', 'children': ['107', '108', '111']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'startpath'},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'dirpath'},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'onefile'},{'id': '113', 'type': 'string', 'children': [], 'value': "'filename'"},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'assignment', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '117', 'type': 'list', 'children': [], 'value': '[]'},{'id': '118', 'type': 'if_statement', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'return_files'},{'id': '120', 'type': 'block', 'children': ['121']},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'filelist'},{'id': '128', 'type': 'if_statement', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'return_files_with_info'},{'id': '130', 'type': 'block', 'children': ['131']},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'dcmdir'},{'id': '138', 'type': 'if_statement', 'children': ['139', '145', '150', '164']},{'id': '139', 'type': 'comparison_operator', 'children': ['140', '144'], 'value': '=='},{'id': '140', 'type': 'call', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '144', 'type': 'integer', 'children': [], 'value': '0'},{'id': '145', 'type': 'block', 'children': ['146']},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '149', 'type': 'None', 'children': []},{'id': '150', 'type': 'elif_clause', 'children': ['151', '157']},{'id': '151', 'type': 'comparison_operator', 'children': ['152', '156'], 'value': '=='},{'id': '152', 'type': 'call', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '156', 'type': 'integer', 'children': [], 'value': '1'},{'id': '157', 'type': 'block', 'children': ['158']},{'id': '158', 'type': 'expression_statement', 'children': ['159']},{'id': '159', 'type': 'assignment', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '161', 'type': 'subscript', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '163', 'type': 'integer', 'children': [], 'value': '0'},{'id': '164', 'type': 'else_clause', 'children': ['165']},{'id': '165', 'type': 'block', 'children': ['166']},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '173', 'type': 'return_statement', 'children': ['174']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'retval'} | def get_sorted_series_files(self, startpath="", series_number=None, return_files_with_info=False,
sort_keys="SliceLocation", return_files=True, remove_doubled_slice_locations=True):
dcmdir = self.files_with_info[:]
if series_number is not None:
dcmdir = [
line for line in dcmdir if line['SeriesNumber'] == series_number
]
dcmdir = sort_list_of_dicts(dcmdir, keys=sort_keys)
logger.debug('SeriesNumber: ' + str(series_number))
if remove_doubled_slice_locations:
dcmdir = self._remove_doubled_slice_locations(dcmdir)
filelist = []
for onefile in dcmdir:
filelist.append(os.path.join(startpath,
self.dirpath, onefile['filename']))
retval = []
if return_files:
retval.append(filelist)
if return_files_with_info:
retval.append(dcmdir)
if len(retval) == 0:
retval = None
elif len(retval) == 1:
retval = retval[0]
else:
retval = tuple(retval)
return retval |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'guess_interval'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'accuracy'},{'id': '7', 'type': 'integer', 'children': [], 'value': '0'},{'id': '8', 'type': 'block', 'children': ['9', '15', '29', '41', '65', '77', '84', '95']},{'id': '9', 'type': 'if_statement', 'children': ['10', '12']},{'id': '10', 'type': 'not_operator', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'return_statement', 'children': ['14']},{'id': '14', 'type': 'integer', 'children': [], 'value': '0'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'list_comprehension', 'children': ['22', '26']},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '26', 'type': 'for_in_clause', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '29', 'type': 'if_statement', 'children': ['30', '36']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '35'], 'value': '=='},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '35', 'type': 'integer', 'children': [], 'value': '1'},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'return_statement', 'children': ['38']},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '40', 'type': 'integer', 'children': [], 'value': '0'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'diffs'},{'id': '44', 'type': 'list_comprehension', 'children': ['45', '54']},{'id': '45', 'type': 'binary_operator', 'children': ['46', '51'], 'value': '-'},{'id': '46', 'type': 'subscript', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '48', 'type': 'binary_operator', 'children': ['49', '50'], 'value': '+'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '50', 'type': 'integer', 'children': [], 'value': '1'},{'id': '51', 'type': 'subscript', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'binary_operator', 'children': ['60', '64'], 'value': '-'},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'nums'},{'id': '64', 'type': 'integer', 'children': [], 'value': '1'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'diffs'},{'id': '68', 'type': 'list_comprehension', 'children': ['69', '70', '73']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '70', 'type': 'for_in_clause', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'diffs'},{'id': '73', 'type': 'if_clause', 'children': ['74']},{'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': '>='},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'accuracy'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'sorted_diff'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'diffs'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'sorted_diff'},{'id': '89', 'type': 'binary_operator', 'children': ['90', '94'], 'value': '//'},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'diffs'},{'id': '94', 'type': 'integer', 'children': [], 'value': '2'},{'id': '95', 'type': 'return_statement', 'children': ['96']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'result'} | def guess_interval(nums, accuracy=0):
if not nums:
return 0
nums = sorted([int(i) for i in nums])
if len(nums) == 1:
return nums[0]
diffs = [nums[i + 1] - nums[i] for i in range(len(nums) - 1)]
diffs = [item for item in diffs if item >= accuracy]
sorted_diff = sorted(diffs)
result = sorted_diff[len(diffs) // 2]
return result |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_list_of_dicts'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'lst_of_dct'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '8', 'type': 'False', 'children': []},{'id': '9', 'type': 'dictionary_splat_pattern', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort_args'},{'id': '11', 'type': 'block', 'children': ['12', '25', '58']},{'id': '12', 'type': 'if_statement', 'children': ['13', '19']},{'id': '13', 'type': 'comparison_operator', 'children': ['14', '18'], 'value': '!='},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '23', 'type': 'list', 'children': ['24'], 'value': '[keys]'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'lst_of_dct'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '30', 'type': 'argument_list', 'children': ['31', '53', '56']},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '33', 'type': 'lambda', 'children': ['34', '36']},{'id': '34', 'type': 'lambda_parameters', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '36', 'type': 'list_comprehension', 'children': ['37', '50']},{'id': '37', 'type': '()', 'children': ['38']},{'id': '38', 'type': 'conditional_expression', 'children': ['39', '44', '47'], 'value': 'if'},{'id': '39', 'type': 'tuple', 'children': ['40', '41']},{'id': '40', 'type': 'False', 'children': []},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': 'in'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '47', 'type': 'tuple', 'children': ['48', '49']},{'id': '48', 'type': 'True', 'children': []},{'id': '49', 'type': 'integer', 'children': [], 'value': '0'},{'id': '50', 'type': 'for_in_clause', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '56', 'type': 'dictionary_splat', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'sort_args'},{'id': '58', 'type': 'return_statement', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'lst_of_dct'} | def sort_list_of_dicts(lst_of_dct, keys, reverse=False, **sort_args):
if type(keys) != list:
keys = [keys]
lst_of_dct.sort(key=lambda x: [((False, x[key]) if key in x else (True, 0)) for key in keys], reverse=reverse, **sort_args)
return lst_of_dct |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'parallel_deblur'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'inputs'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'pos_ref_db_fp'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'neg_ref_dp_fp'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'jobs_to_start'},{'id': '10', 'type': 'integer', 'children': [], 'value': '1'},{'id': '11', 'type': 'block', 'children': ['12', '21', '33', '42', '46', '50', '83', '109', '135', '144', '153', '162', '173', '180']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'getLogger'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'call', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'binary_operator', 'children': ['28', '29'], 'value': '%'},{'id': '28', 'type': 'string', 'children': [], 'value': "'parallel deblur started for %d inputs'"},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'inputs'},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'remove_param_list'},{'id': '36', 'type': 'list', 'children': ['37', '38', '39', '40', '41'], 'value': "['-O', '--jobs-to-start', '--seqs-fp',\n '--pos-ref-db-fp', '--neg-ref-db-fp']"},{'id': '37', 'type': 'string', 'children': [], 'value': "'-O'"},{'id': '38', 'type': 'string', 'children': [], 'value': "'--jobs-to-start'"},{'id': '39', 'type': 'string', 'children': [], 'value': "'--seqs-fp'"},{'id': '40', 'type': 'string', 'children': [], 'value': "'--pos-ref-db-fp'"},{'id': '41', 'type': 'string', 'children': [], 'value': "'--neg-ref-db-fp'"},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'skipnext'},{'id': '45', 'type': 'False', 'children': []},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '49', 'type': 'list', 'children': [], 'value': '[]'},{'id': '50', 'type': 'for_statement', 'children': ['51', '52', '57']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'carg'},{'id': '52', 'type': 'subscript', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '54', 'type': 'slice', 'children': ['55', '56']},{'id': '55', 'type': 'integer', 'children': [], 'value': '2'},{'id': '56', 'type': 'colon', 'children': []},{'id': '57', 'type': 'block', 'children': ['58', '66', '76']},{'id': '58', 'type': 'if_statement', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'skipnext'},{'id': '60', 'type': 'block', 'children': ['61', '65']},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'skipnext'},{'id': '64', 'type': 'False', 'children': []},{'id': '65', 'type': 'continue_statement', 'children': []},{'id': '66', 'type': 'if_statement', 'children': ['67', '70']},{'id': '67', 'type': 'comparison_operator', 'children': ['68', '69'], 'value': 'in'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'carg'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'remove_param_list'},{'id': '70', 'type': 'block', 'children': ['71', '75']},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'skipnext'},{'id': '74', 'type': 'True', 'children': []},{'id': '75', 'type': 'continue_statement', 'children': []},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'carg'},{'id': '83', 'type': 'if_statement', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'pos_ref_db_fp'},{'id': '85', 'type': 'block', 'children': ['86', '95', '102']},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'new_pos_ref_db_fp'},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'string', 'children': [], 'value': "','"},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'pos_ref_db_fp'},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '100']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'string', 'children': [], 'value': "'--pos-ref-db-fp'"},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'new_pos_ref_db_fp'},{'id': '109', 'type': 'if_statement', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'neg_ref_dp_fp'},{'id': '111', 'type': 'block', 'children': ['112', '121', '128']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'new_neg_ref_db_fp'},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'string', 'children': [], 'value': "','"},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'neg_ref_dp_fp'},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'string', 'children': [], 'value': "'--neg-ref-db-fp'"},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'call', 'children': ['130', '133']},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '133', 'type': 'argument_list', 'children': ['134']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'new_neg_ref_db_fp'},{'id': '135', 'type': 'expression_statement', 'children': ['136']},{'id': '136', 'type': 'call', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '140', 'type': 'argument_list', 'children': ['141']},{'id': '141', 'type': 'binary_operator', 'children': ['142', '143'], 'value': '%'},{'id': '142', 'type': 'string', 'children': [], 'value': "'ready for functor %s'"},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '144', 'type': 'expression_statement', 'children': ['145']},{'id': '145', 'type': 'assignment', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'functor'},{'id': '147', 'type': 'call', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'partial'},{'id': '149', 'type': 'argument_list', 'children': ['150', '151', '152']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'run_functor'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'deblur_system_call'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'newparams'},{'id': '153', 'type': 'expression_statement', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '158', 'type': 'argument_list', 'children': ['159']},{'id': '159', 'type': 'binary_operator', 'children': ['160', '161'], 'value': '%'},{'id': '160', 'type': 'string', 'children': [], 'value': "'ready for pool %d jobs'"},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'jobs_to_start'},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'assignment', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'pool'},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'mp'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'Pool'},{'id': '169', 'type': 'argument_list', 'children': ['170']},{'id': '170', 'type': 'keyword_argument', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'processes'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'jobs_to_start'},{'id': '173', 'type': 'expression_statement', 'children': ['174']},{'id': '174', 'type': 'call', 'children': ['175', '178']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '178', 'type': 'argument_list', 'children': ['179']},{'id': '179', 'type': 'string', 'children': [], 'value': "'almost running...'"},{'id': '180', 'type': 'for_statement', 'children': ['181', '185', '192']},{'id': '181', 'type': 'pattern_list', 'children': ['182', '183', '184']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'es'},{'id': '185', 'type': 'call', 'children': ['186', '189']},{'id': '186', 'type': 'attribute', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'pool'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '189', 'type': 'argument_list', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'functor'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'inputs'},{'id': '192', 'type': 'block', 'children': ['193']},{'id': '193', 'type': 'if_statement', 'children': ['194', '197']},{'id': '194', 'type': 'comparison_operator', 'children': ['195', '196'], 'value': '!='},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'es'},{'id': '196', 'type': 'integer', 'children': [], 'value': '0'},{'id': '197', 'type': 'block', 'children': ['198']},{'id': '198', 'type': 'raise_statement', 'children': ['199']},{'id': '199', 'type': 'call', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'},{'id': '201', 'type': 'argument_list', 'children': ['202']},{'id': '202', 'type': 'binary_operator', 'children': ['203', '204'], 'value': '%'},{'id': '203', 'type': 'string', 'children': [], 'value': '"stdout: %s\\nstderr: %s\\nexit: %d"'},{'id': '204', 'type': 'tuple', 'children': ['205', '206', '207']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'stderr'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'es'} | def parallel_deblur(inputs, params,
pos_ref_db_fp, neg_ref_dp_fp, jobs_to_start=1):
logger = logging.getLogger(__name__)
logger.info('parallel deblur started for %d inputs' % len(inputs))
remove_param_list = ['-O', '--jobs-to-start', '--seqs-fp',
'--pos-ref-db-fp', '--neg-ref-db-fp']
skipnext = False
newparams = []
for carg in params[2:]:
if skipnext:
skipnext = False
continue
if carg in remove_param_list:
skipnext = True
continue
newparams.append(carg)
if pos_ref_db_fp:
new_pos_ref_db_fp = ','.join(pos_ref_db_fp)
newparams.append('--pos-ref-db-fp')
newparams.append(new_pos_ref_db_fp)
if neg_ref_dp_fp:
new_neg_ref_db_fp = ','.join(neg_ref_dp_fp)
newparams.append('--neg-ref-db-fp')
newparams.append(new_neg_ref_db_fp)
logger.debug('ready for functor %s' % newparams)
functor = partial(run_functor, deblur_system_call, newparams)
logger.debug('ready for pool %d jobs' % jobs_to_start)
pool = mp.Pool(processes=jobs_to_start)
logger.debug('almost running...')
for stdout, stderr, es in pool.map(functor, inputs):
if es != 0:
raise RuntimeError("stdout: %s\nstderr: %s\nexit: %d" % (stdout,
stderr,
es)) |
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logger = logging.getLogger(__name__)
logger.info('build_index_sortmerna files %s to'
' dir %s' % (ref_fp, working_dir))
all_db = []
for db in ref_fp:
fasta_dir, fasta_filename = split(db)
index_basename = splitext(fasta_filename)[0]
db_output = join(working_dir, index_basename)
logger.debug('processing file %s into location %s' % (db, db_output))
params = ['indexdb_rna', '--ref', '%s,%s' %
(db, db_output), '--tmpdir', working_dir]
sout, serr, res = _system_call(params)
if not res == 0:
logger.error('Problem running indexdb_rna on file %s to dir %s. '
'database not indexed' % (db, db_output))
logger.debug('stdout: %s' % sout)
logger.debug('stderr: %s' % serr)
logger.critical('execution halted')
raise RuntimeError('Cannot index database file %s' % db)
logger.debug('file %s indexed' % db)
all_db.append(db_output)
return all_db |
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remove_artifacts_from_biom_table(table_filename,
fasta_filename,
ref_fp,
biom_table_dir,
ref_db_fp,
threads=1,
verbose=False,
sim_thresh=None,
coverage_thresh=None):
logger = logging.getLogger(__name__)
logger.info('getting 16s sequences from the biom table')
clean_fp, num_seqs_left, tmp_files = remove_artifacts_seqs(fasta_filename, ref_fp,
working_dir=biom_table_dir,
ref_db_fp=ref_db_fp,
negate=False, threads=threads,
verbose=verbose,
sim_thresh=sim_thresh,
coverage_thresh=coverage_thresh)
if clean_fp is None:
logger.warn("No clean sequences in %s" % fasta_filename)
return tmp_files
logger.debug('removed artifacts from sequences input %s'
' to output %s' % (fasta_filename, clean_fp))
good_seqs = {s for _, s in sequence_generator(clean_fp)}
logger.debug('loaded %d sequences from cleaned biom table'
' fasta file' % len(good_seqs))
logger.debug('loading biom table %s' % table_filename)
table = load_table(table_filename)
artifact_table = table.filter(list(good_seqs),
axis='observation', inplace=False,
invert=True)
filter_minreads_samples_from_table(artifact_table)
output_nomatch_fp = join(biom_table_dir, 'reference-non-hit.biom')
write_biom_table(artifact_table, output_nomatch_fp)
logger.info('wrote artifact only filtered biom table to %s'
% output_nomatch_fp)
output_nomatch_fasta_fp = join(biom_table_dir, 'reference-non-hit.seqs.fa')
fasta_from_biom(artifact_table, output_nomatch_fasta_fp)
table.filter(list(good_seqs), axis='observation')
filter_minreads_samples_from_table(table)
output_fp = join(biom_table_dir, 'reference-hit.biom')
write_biom_table(table, output_fp)
logger.info('wrote 16s filtered biom table to %s' % output_fp)
output_match_fasta_fp = join(biom_table_dir, 'reference-hit.seqs.fa')
fasta_from_biom(table, output_match_fasta_fp)
tmp_files.append(clean_fp)
return tmp_files |
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'children': [], 'value': "'running on ref_fp %s working dir %s refdb_fp %s seqs %s'"},{'id': '163', 'type': 'tuple', 'children': ['164', '165', '166', '169']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'db'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'working_dir'},{'id': '166', 'type': 'subscript', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'ref_db_fp'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'seqs_fp'},{'id': '170', 'type': 'expression_statement', 'children': ['171']},{'id': '171', 'type': 'assignment', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '173', 'type': 'list', 'children': ['174', '175', '176', '177', '178', '185', '186', '187', '188', '189', '190', '191', '192', '193', '194'], 'value': "['sortmerna', '--reads', seqs_fp, '--ref', '%s,%s' %\n (db, ref_db_fp[i]),\n '--aligned', blast_output, '--blast', '3', '--best', '1',\n '--print_all_reads', '-v', '-e', '100']"},{'id': '174', 'type': 'string', 'children': [], 'value': "'sortmerna'"},{'id': '175', 'type': 'string', 'children': [], 'value': "'--reads'"},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'seqs_fp'},{'id': '177', 'type': 'string', 'children': [], 'value': "'--ref'"},{'id': '178', 'type': 'binary_operator', 'children': ['179', '180'], 'value': '%'},{'id': '179', 'type': 'string', 'children': [], 'value': "'%s,%s'"},{'id': '180', 'type': 'tuple', 'children': ['181', '182']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'db'},{'id': '182', 'type': 'subscript', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'ref_db_fp'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '185', 'type': 'string', 'children': [], 'value': "'--aligned'"},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'blast_output'},{'id': '187', 'type': 'string', 'children': [], 'value': "'--blast'"},{'id': '188', 'type': 'string', 'children': [], 'value': "'3'"},{'id': '189', 'type': 'string', 'children': [], 'value': "'--best'"},{'id': '190', 'type': 'string', 'children': [], 'value': "'1'"},{'id': '191', 'type': 'string', 'children': [], 'value': "'--print_all_reads'"},{'id': '192', 'type': 'string', 'children': [], 'value': "'-v'"},{'id': '193', 'type': 'string', 'children': [], 'value': "'-e'"},{'id': '194', 'type': 'string', 'children': [], 'value': "'100'"},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'assignment', 'children': ['197', '201']},{'id': '197', 'type': 'pattern_list', 'children': ['198', '199', '200']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'sout'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'serr'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '201', 'type': 'call', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': '_system_call'},{'id': '203', 'type': 'argument_list', 'children': ['204']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '205', 'type': 'if_statement', 'children': ['206', '210']},{'id': '206', 'type': 'not_operator', 'children': ['207']},{'id': '207', 'type': 'comparison_operator', 'children': ['208', '209'], 'value': '=='},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '209', 'type': 'integer', 'children': [], 'value': '0'},{'id': '210', 'type': 'block', 'children': ['211', '220', '229', '238']},{'id': '211', 'type': 'expression_statement', 'children': ['212']},{'id': '212', 'type': 'call', 'children': ['213', '216']},{'id': '213', 'type': 'attribute', 'children': ['214', '215']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '216', 'type': 'argument_list', 'children': ['217']},{'id': '217', 'type': 'binary_operator', 'children': ['218', '219'], 'value': '%'},{'id': '218', 'type': 'string', 'children': [], 'value': "'sortmerna error on file %s'"},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'seqs_fp'},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'call', 'children': ['222', '225']},{'id': '222', 'type': 'attribute', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '224', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '225', 'type': 'argument_list', 'children': ['226']},{'id': '226', 'type': 'binary_operator', 'children': ['227', '228'], 'value': '%'},{'id': '227', 'type': 'string', 'children': [], 'value': "'stdout : %s'"},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'sout'},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '234']},{'id': '231', 'type': 'attribute', 'children': ['232', '233']},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '234', 'type': 'argument_list', 'children': ['235']},{'id': '235', 'type': 'binary_operator', 'children': ['236', '237'], 'value': '%'},{'id': '236', 'type': 'string', 'children': [], 'value': "'stderr : %s'"},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'serr'},{'id': '238', 'type': 'return_statement', 'children': ['239']},{'id': '239', 'type': 'expression_list', 'children': ['240', '241', '242']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'output_fp'},{'id': '241', 'type': 'integer', 'children': [], 'value': '0'},{'id': '242', 'type': 'list', 'children': [], 'value': '[]'},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'assignment', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'blast_output_filename'},{'id': '246', 'type': 'binary_operator', 'children': ['247', '248'], 'value': '%'},{'id': '247', 'type': 'string', 'children': [], 'value': "'%s.blast'"},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'blast_output'},{'id': '249', 'type': 'with_statement', 'children': ['250', '260']},{'id': '250', 'type': 'with_clause', 'children': ['251']},{'id': '251', 'type': 'with_item', 'children': ['252']},{'id': '252', 'type': 'as_pattern', 'children': ['253', '258']},{'id': '253', 'type': 'call', 'children': ['254', '255']},{'id': '254', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '255', 'type': 'argument_list', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'blast_output_filename'},{'id': '257', 'type': 'string', 'children': [], 'value': "'r'"},{'id': '258', 'type': 'as_pattern_target', 'children': ['259']},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'bfl'},{'id': '260', 'type': 'block', 'children': ['261']},{'id': '261', 'type': 'for_statement', 'children': ['262', '263', '264']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '263', 'type': 'identifier', 'children': [], 'value': 'bfl'},{'id': '264', 'type': 'block', 'children': ['265', '278', '286']},{'id': '265', 'type': 'expression_statement', 'children': ['266']},{'id': '266', 'type': 'assignment', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '268', 'type': 'call', 'children': ['269', '276']},{'id': '269', 'type': 'attribute', 'children': ['270', '275']},{'id': '270', 'type': 'call', 'children': ['271', '274']},{'id': '271', 'type': 'attribute', 'children': ['272', '273']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '273', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '274', 'type': 'argument_list', 'children': []},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '276', 'type': 'argument_list', 'children': ['277']},{'id': '277', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '278', 'type': 'if_statement', 'children': ['279', '284']},{'id': '279', 'type': 'comparison_operator', 'children': ['280', '283'], 'value': '=='},{'id': '280', 'type': 'subscript', 'children': ['281', '282']},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '282', 'type': 'integer', 'children': [], 'value': '1'},{'id': '283', 'type': 'string', 'children': [], 'value': "'*'"},{'id': '284', 'type': 'block', 'children': ['285']},{'id': '285', 'type': 'continue_statement', 'children': []},{'id': '286', 'type': 'if_statement', 'children': ['287', '325']},{'id': '287', 'type': 'boolean_operator', 'children': ['288', '308', '309'], 'value': 'and'},{'id': '288', 'type': 'boolean_operator', 'children': ['289', '298', '299'], 'value': 'and'},{'id': '289', 'type': '()', 'children': ['290']},{'id': '290', 'type': 'comparison_operator', 'children': ['291', '297'], 'value': '>='},{'id': '291', 'type': 'call', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '293', 'type': 'argument_list', 'children': ['294']},{'id': '294', 'type': 'subscript', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '296', 'type': 'integer', 'children': [], 'value': '2'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'sim_thresh'},{'id': '298', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '299', 'type': '()', 'children': ['300']},{'id': '300', 'type': 'comparison_operator', 'children': ['301', '307'], 'value': '>='},{'id': '301', 'type': 'call', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '303', 'type': 'argument_list', 'children': ['304']},{'id': '304', 'type': 'subscript', 'children': ['305', '306']},{'id': '305', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '306', 'type': 'integer', 'children': [], 'value': '13'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'coverage_thresh'},{'id': '308', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '309', 'type': '()', 'children': ['310']},{'id': '310', 'type': 'comparison_operator', 'children': ['311', '317'], 'value': '>='},{'id': '311', 'type': 'call', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '313', 'type': 'argument_list', 'children': ['314']},{'id': '314', 'type': 'subscript', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '316', 'type': 'integer', 'children': [], 'value': '11'},{'id': '317', 'type': 'binary_operator', 'children': ['318', '319'], 'value': '*'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'bitscore_thresh'},{'id': '319', 'type': 'call', 'children': ['320', '321']},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '321', 'type': 'argument_list', 'children': ['322']},{'id': '322', 'type': 'subscript', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '324', 'type': 'integer', 'children': [], 'value': '0'},{'id': '325', 'type': 'block', 'children': ['326']},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'call', 'children': ['328', '331']},{'id': '328', 'type': 'attribute', 'children': ['329', '330']},{'id': '329', 'type': 'identifier', 'children': [], 'value': 'aligned_seq_ids'},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'subscript', 'children': ['333', '334']},{'id': '333', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '334', 'type': 'integer', 'children': [], 'value': '0'},{'id': '335', 'type': 'if_statement', 'children': ['336', '337', '347']},{'id': '336', 'type': 'identifier', 'children': [], 'value': 'negate'},{'id': '337', 'type': 'block', 'children': ['338']},{'id': '338', 'type': 'function_definition', 'children': ['339', '340', '342']},{'id': '339', 'type': 'function_name', 'children': [], 'value': 'op'},{'id': '340', 'type': 'parameters', 'children': ['341']},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '342', 'type': 'block', 'children': ['343']},{'id': '343', 'type': 'return_statement', 'children': ['344']},{'id': '344', 'type': 'comparison_operator', 'children': ['345', '346'], 'value': 'not'},{'id': '345', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'aligned_seq_ids'},{'id': '347', 'type': 'else_clause', 'children': ['348']},{'id': '348', 'type': 'block', 'children': ['349']},{'id': '349', 'type': 'function_definition', 'children': ['350', '351', '353']},{'id': '350', 'type': 'function_name', 'children': [], 'value': 'op'},{'id': '351', 'type': 'parameters', 'children': ['352']},{'id': '352', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '353', 'type': 'block', 'children': ['354']},{'id': '354', 'type': 'return_statement', 'children': ['355']},{'id': '355', 'type': 'comparison_operator', 'children': ['356', '357'], 'value': 'in'},{'id': '356', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '357', 'type': 'identifier', 'children': [], 'value': 'aligned_seq_ids'},{'id': '358', 'type': 'expression_statement', 'children': ['359']},{'id': '359', 'type': 'assignment', 'children': ['360', '361']},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'totalseqs'},{'id': '361', 'type': 'integer', 'children': [], 'value': '0'},{'id': '362', 'type': 'expression_statement', 'children': ['363']},{'id': '363', 'type': 'assignment', 'children': ['364', '365']},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'okseqs'},{'id': '365', 'type': 'integer', 'children': [], 'value': '0'},{'id': '366', 'type': 'expression_statement', 'children': ['367']},{'id': '367', 'type': 'assignment', 'children': ['368', '369']},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'badseqs'},{'id': '369', 'type': 'integer', 'children': [], 'value': '0'},{'id': '370', 'type': 'with_statement', 'children': ['371', '381']},{'id': '371', 'type': 'with_clause', 'children': ['372']},{'id': '372', 'type': 'with_item', 'children': ['373']},{'id': '373', 'type': 'as_pattern', 'children': ['374', '379']},{'id': '374', 'type': 'call', 'children': ['375', '376']},{'id': '375', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '376', 'type': 'argument_list', 'children': ['377', '378']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'output_fp'},{'id': '378', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '379', 'type': 'as_pattern_target', 'children': ['380']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'out_f'},{'id': '381', 'type': 'block', 'children': ['382']},{'id': '382', 'type': 'for_statement', 'children': ['383', '386', '390']},{'id': '383', 'type': 'pattern_list', 'children': ['384', '385']},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '386', 'type': 'call', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'sequence_generator'},{'id': '388', 'type': 'argument_list', 'children': ['389']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'seqs_fp'},{'id': '390', 'type': 'block', 'children': ['391', '395', '405']},{'id': '391', 'type': 'expression_statement', 'children': ['392']},{'id': '392', 'type': 'augmented_assignment', 'children': ['393', '394'], 'value': '+='},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'totalseqs'},{'id': '394', 'type': 'integer', 'children': [], 'value': '1'},{'id': '395', 'type': 'expression_statement', 'children': ['396']},{'id': '396', 'type': 'assignment', 'children': ['397', '398']},{'id': '397', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '398', 'type': 'subscript', 'children': ['399', '404']},{'id': '399', 'type': 'call', 'children': ['400', '403']},{'id': '400', 'type': 'attribute', 'children': ['401', '402']},{'id': '401', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '402', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '403', 'type': 'argument_list', 'children': []},{'id': '404', 'type': 'integer', 'children': [], 'value': '0'},{'id': '405', 'type': 'if_statement', 'children': ['406', '410', '426']},{'id': '406', 'type': 'call', 'children': ['407', '408']},{'id': '407', 'type': 'identifier', 'children': [], 'value': 'op'},{'id': '408', 'type': 'argument_list', 'children': ['409']},{'id': '409', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '410', 'type': 'block', 'children': ['411', '422']},{'id': '411', 'type': 'expression_statement', 'children': ['412']},{'id': '412', 'type': 'call', 'children': ['413', '416']},{'id': '413', 'type': 'attribute', 'children': ['414', '415']},{'id': '414', 'type': 'identifier', 'children': [], 'value': 'out_f'},{'id': '415', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '416', 'type': 'argument_list', 'children': ['417']},{'id': '417', 'type': 'binary_operator', 'children': ['418', '419'], 'value': '%'},{'id': '418', 'type': 'string', 'children': [], 'value': '">%s\\n%s\\n"'},{'id': '419', 'type': 'tuple', 'children': ['420', '421']},{'id': '420', 'type': 'identifier', 'children': [], 'value': 'label'},{'id': '421', 'type': 'identifier', 'children': [], 'value': 'seq'},{'id': '422', 'type': 'expression_statement', 'children': ['423']},{'id': '423', 'type': 'augmented_assignment', 'children': ['424', '425'], 'value': '+='},{'id': '424', 'type': 'identifier', 'children': [], 'value': 'okseqs'},{'id': '425', 'type': 'integer', 'children': [], 'value': '1'},{'id': '426', 'type': 'else_clause', 'children': ['427']},{'id': '427', 'type': 'block', 'children': ['428']},{'id': '428', 'type': 'expression_statement', 'children': ['429']},{'id': '429', 'type': 'augmented_assignment', 'children': ['430', '431'], 'value': '+='},{'id': '430', 'type': 'identifier', 'children': [], 'value': 'badseqs'},{'id': '431', 'type': 'integer', 'children': [], 'value': '1'},{'id': '432', 'type': 'expression_statement', 'children': ['433']},{'id': '433', 'type': 'call', 'children': ['434', '437']},{'id': '434', 'type': 'attribute', 'children': ['435', '436']},{'id': '435', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '436', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '437', 'type': 'argument_list', 'children': ['438']},{'id': '438', 'type': 'binary_operator', 'children': ['439', '442'], 'value': '%'},{'id': '439', 'type': 'concatenated_string', 'children': ['440', '441']},{'id': '440', 'type': 'string', 'children': [], 'value': "'total sequences %d, passing sequences %d, '"},{'id': '441', 'type': 'string', 'children': [], 'value': "'failing sequences %d'"},{'id': '442', 'type': 'tuple', 'children': ['443', '444', '445']},{'id': '443', 'type': 'identifier', 'children': [], 'value': 'totalseqs'},{'id': '444', 'type': 'identifier', 'children': [], 'value': 'okseqs'},{'id': '445', 'type': 'identifier', 'children': [], 'value': 'badseqs'},{'id': '446', 'type': 'return_statement', 'children': ['447']},{'id': '447', 'type': 'expression_list', 'children': ['448', '449', '450']},{'id': '448', 'type': 'identifier', 'children': [], 'value': 'output_fp'},{'id': '449', 'type': 'identifier', 'children': [], 'value': 'okseqs'},{'id': '450', 'type': 'list', 'children': ['451'], 'value': '[blast_output_filename]'},{'id': '451', 'type': 'identifier', 'children': [], 'value': 'blast_output_filename'} | def remove_artifacts_seqs(seqs_fp,
ref_fp,
working_dir,
ref_db_fp,
negate=False,
threads=1,
verbose=False,
sim_thresh=None,
coverage_thresh=None):
logger = logging.getLogger(__name__)
logger.info('remove_artifacts_seqs file %s' % seqs_fp)
if stat(seqs_fp).st_size == 0:
logger.warn('file %s has size 0, continuing' % seqs_fp)
return None, 0, []
if coverage_thresh is None:
if negate:
coverage_thresh = 0.95 * 100
else:
coverage_thresh = 0.5 * 100
if sim_thresh is None:
if negate:
sim_thresh = 0.95 * 100
else:
sim_thresh = 0.65 * 100
bitscore_thresh = 0.65
output_fp = join(working_dir,
"%s.no_artifacts" % basename(seqs_fp))
blast_output = join(working_dir,
'%s.sortmerna' % basename(seqs_fp))
aligned_seq_ids = set()
for i, db in enumerate(ref_fp):
logger.debug('running on ref_fp %s working dir %s refdb_fp %s seqs %s'
% (db, working_dir, ref_db_fp[i], seqs_fp))
params = ['sortmerna', '--reads', seqs_fp, '--ref', '%s,%s' %
(db, ref_db_fp[i]),
'--aligned', blast_output, '--blast', '3', '--best', '1',
'--print_all_reads', '-v', '-e', '100']
sout, serr, res = _system_call(params)
if not res == 0:
logger.error('sortmerna error on file %s' % seqs_fp)
logger.error('stdout : %s' % sout)
logger.error('stderr : %s' % serr)
return output_fp, 0, []
blast_output_filename = '%s.blast' % blast_output
with open(blast_output_filename, 'r') as bfl:
for line in bfl:
line = line.strip().split('\t')
if line[1] == '*':
continue
if (float(line[2]) >= sim_thresh) and \
(float(line[13]) >= coverage_thresh) and \
(float(line[11]) >= bitscore_thresh * len(line[0])):
aligned_seq_ids.add(line[0])
if negate:
def op(x): return x not in aligned_seq_ids
else:
def op(x): return x in aligned_seq_ids
totalseqs = 0
okseqs = 0
badseqs = 0
with open(output_fp, 'w') as out_f:
for label, seq in sequence_generator(seqs_fp):
totalseqs += 1
label = label.split()[0]
if op(label):
out_f.write(">%s\n%s\n" % (label, seq))
okseqs += 1
else:
badseqs += 1
logger.info('total sequences %d, passing sequences %d, '
'failing sequences %d' % (totalseqs, okseqs, badseqs))
return output_fp, okseqs, [blast_output_filename] |
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'type': 'identifier', 'children': [], 'value': 'output_deblur_fp'},{'id': '301', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '302', 'type': 'as_pattern_target', 'children': ['303']},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '304', 'type': 'block', 'children': ['305', '319', '347']},{'id': '305', 'type': 'expression_statement', 'children': ['306']},{'id': '306', 'type': 'assignment', 'children': ['307', '308']},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'seqs'},{'id': '308', 'type': 'call', 'children': ['309', '310']},{'id': '309', 'type': 'identifier', 'children': [], 'value': 'deblur'},{'id': '310', 'type': 'argument_list', 'children': ['311', '315', '316', '317', '318']},{'id': '311', 'type': 'call', 'children': ['312', '313']},{'id': '312', 'type': 'identifier', 'children': [], 'value': 'sequence_generator'},{'id': '313', 'type': 'argument_list', 'children': ['314']},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'output_msa_fp'},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'mean_error'},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'error_dist'},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'indel_prob'},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'indel_max'},{'id': '319', 'type': 'if_statement', 'children': ['320', '323']},{'id': '320', 'type': 'comparison_operator', 'children': ['321', '322'], 'value': 'is'},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'seqs'},{'id': '322', 'type': 'None', 'children': []},{'id': '323', 'type': 'block', 'children': ['324', '336', '345']},{'id': '324', 'type': 'expression_statement', 'children': ['325']},{'id': '325', 'type': 'call', 'children': ['326', '329']},{'id': '326', 'type': 'attribute', 'children': ['327', '328']},{'id': '327', 'type': 'identifier', 'children': [], 'value': 'warnings'},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '329', 'type': 'argument_list', 'children': ['330', '335']},{'id': '330', 'type': 'binary_operator', 'children': ['331', '334'], 'value': '%'},{'id': '331', 'type': 'concatenated_string', 'children': ['332', '333']},{'id': '332', 'type': 'string', 'children': [], 'value': "'multiple sequence alignment file %s contains '"},{'id': '333', 'type': 'string', 'children': [], 'value': "'no sequences'"},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'output_msa_fp'},{'id': '335', 'type': 'identifier', 'children': [], 'value': 'UserWarning'},{'id': '336', 'type': 'expression_statement', 'children': ['337']},{'id': '337', 'type': 'call', 'children': ['338', '341']},{'id': '338', 'type': 'attribute', 'children': ['339', '340']},{'id': '339', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '340', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '341', 'type': 'argument_list', 'children': ['342']},{'id': '342', 'type': 'binary_operator', 'children': ['343', '344'], 'value': '%'},{'id': '343', 'type': 'string', 'children': [], 'value': "'no sequences returned from deblur for file %s'"},{'id': '344', 'type': 'identifier', 'children': [], 'value': 'output_msa_fp'},{'id': '345', 'type': 'return_statement', 'children': ['346']},{'id': '346', 'type': 'None', 'children': []},{'id': '347', 'type': 'for_statement', 'children': ['348', '349', '350']},{'id': '348', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '349', 'type': 'identifier', 'children': [], 'value': 'seqs'},{'id': '350', 'type': 'block', 'children': ['351', '365']},{'id': '351', 'type': 'expression_statement', 'children': ['352']},{'id': '352', 'type': 'assignment', 'children': ['353', '356']},{'id': '353', 'type': 'attribute', 'children': ['354', '355']},{'id': '354', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '355', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '356', 'type': 'call', 'children': ['357', '362']},{'id': '357', 'type': 'attribute', 'children': ['358', '361']},{'id': '358', 'type': 'attribute', 'children': ['359', '360']},{'id': '359', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '360', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '361', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '362', 'type': 'argument_list', 'children': ['363', '364']},{'id': '363', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '364', 'type': 'string', 'children': [], 'value': "''"},{'id': '365', 'type': 'expression_statement', 'children': ['366']},{'id': '366', 'type': 'call', 'children': ['367', '370']},{'id': '367', 'type': 'attribute', 'children': ['368', '369']},{'id': '368', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '370', 'type': 'argument_list', 'children': ['371']},{'id': '371', 'type': 'call', 'children': ['372', '375']},{'id': '372', 'type': 'attribute', 'children': ['373', '374']},{'id': '373', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'to_fasta'},{'id': '375', 'type': 'argument_list', 'children': []},{'id': '376', 'type': 'expression_statement', 'children': ['377']},{'id': '377', 'type': 'assignment', 'children': ['378', '379']},{'id': '378', 'type': 'identifier', 'children': [], 'value': 'output_no_chimeras_fp'},{'id': '379', 'type': 'call', 'children': ['380', '381']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'remove_chimeras_denovo_from_seqs'},{'id': '381', 'type': 'argument_list', 'children': ['382', '383', '384']},{'id': '382', 'type': 'identifier', 'children': [], 'value': 'output_deblur_fp'},{'id': '383', 'type': 'identifier', 'children': [], 'value': 'working_dir'},{'id': '384', 'type': 'keyword_argument', 'children': ['385', '386']},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'threads'},{'id': '386', 'type': 'identifier', 'children': [], 'value': 'threads_per_sample'},{'id': '387', 'type': 'expression_statement', 'children': ['388']},{'id': '388', 'type': 'call', 'children': ['389', '392']},{'id': '389', 'type': 'attribute', 'children': ['390', '391']},{'id': '390', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '391', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '392', 'type': 'argument_list', 'children': ['393']},{'id': '393', 'type': 'string', 'children': [], 'value': "'finished processing file'"},{'id': '394', 'type': 'return_statement', 'children': ['395']},{'id': '395', 'type': 'identifier', 'children': [], 'value': 'output_no_chimeras_fp'} | def launch_workflow(seqs_fp, working_dir, mean_error, error_dist,
indel_prob, indel_max, trim_length, left_trim_length,
min_size, ref_fp, ref_db_fp, threads_per_sample=1,
sim_thresh=None, coverage_thresh=None):
logger = logging.getLogger(__name__)
logger.info('--------------------------------------------------------')
logger.info('launch_workflow for file %s' % seqs_fp)
output_trim_fp = join(working_dir, "%s.trim" % basename(seqs_fp))
with open(output_trim_fp, 'w') as out_f:
for label, seq in trim_seqs(
input_seqs=sequence_generator(seqs_fp),
trim_len=trim_length,
left_trim_len=left_trim_length):
out_f.write(">%s\n%s\n" % (label, seq))
output_derep_fp = join(working_dir,
"%s.derep" % basename(output_trim_fp))
dereplicate_seqs(seqs_fp=output_trim_fp,
output_fp=output_derep_fp,
min_size=min_size, threads=threads_per_sample)
output_artif_fp, num_seqs_left, _ = remove_artifacts_seqs(seqs_fp=output_derep_fp,
ref_fp=ref_fp,
working_dir=working_dir,
ref_db_fp=ref_db_fp,
negate=True,
threads=threads_per_sample,
sim_thresh=sim_thresh)
if not output_artif_fp:
warnings.warn('Problem removing artifacts from file %s' %
seqs_fp, UserWarning)
logger.warning('remove artifacts failed, aborting')
return None
if num_seqs_left > 1:
output_msa_fp = join(working_dir,
"%s.msa" % basename(output_artif_fp))
alignment = multiple_sequence_alignment(seqs_fp=output_artif_fp,
threads=threads_per_sample)
if not alignment:
warnings.warn('Problem performing multiple sequence alignment '
'on file %s' % seqs_fp, UserWarning)
logger.warning('msa failed. aborting')
return None
elif num_seqs_left == 1:
output_msa_fp = output_artif_fp
else:
err_msg = ('No sequences left after artifact removal in '
'file %s' % seqs_fp)
warnings.warn(err_msg, UserWarning)
logger.warning(err_msg)
return None
output_deblur_fp = join(working_dir,
"%s.deblur" % basename(output_msa_fp))
with open(output_deblur_fp, 'w') as f:
seqs = deblur(sequence_generator(output_msa_fp), mean_error,
error_dist, indel_prob, indel_max)
if seqs is None:
warnings.warn('multiple sequence alignment file %s contains '
'no sequences' % output_msa_fp, UserWarning)
logger.warn('no sequences returned from deblur for file %s' %
output_msa_fp)
return None
for s in seqs:
s.sequence = s.sequence.replace('-', '')
f.write(s.to_fasta())
output_no_chimeras_fp = remove_chimeras_denovo_from_seqs(
output_deblur_fp, working_dir, threads=threads_per_sample)
logger.info('finished processing file')
return output_no_chimeras_fp |
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if not self.parent.loaded: self.parent.load()
logs = self.parent.p.logs_dir.flat_directories
logs.sort(key=lambda x: x.mod_time)
return logs |
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'0'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '18', 'type': 'list', 'children': [], 'value': '[]'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'strings'},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'strings'},{'id': '26', 'type': 'while_statement', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'strings'},{'id': '28', 'type': 'block', 'children': ['29', '37']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'template'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'strings'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '36', 'type': 'argument_list', 'children': []},{'id': '37', 'type': 'for_statement', 'children': ['38', '41', '45']},{'id': '38', 'type': 'pattern_list', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'candidate'},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'strings'},{'id': '45', 'type': 'block', 'children': ['46']},{'id': '46', 'type': 'if_statement', 'children': ['47', '54']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '53'], 'value': '=='},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'count_string_diff'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'template'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'candidate'},{'id': '53', 'type': 'integer', 'children': [], 'value': '1'},{'id': '54', 'type': 'block', 'children': ['55', '66', '72', '79']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '58', 'type': 'list', 'children': ['59', '60'], 'value': '[template, strings.pop(i)]'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'template'},{'id': '60', 'type': 'call', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'strings'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '71', 'type': 'argument_list', 'children': []},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '77']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'pairs'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'pair'},{'id': '79', 'type': 'break_statement', 'children': []},{'id': '80', 'type': 'return_statement', 'children': ['81']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'pairs'} | def sort_string_by_pairs(strings):
assert len(strings) % 2 == 0
pairs = []
strings = list(strings)
while strings:
template = strings.pop()
for i, candidate in enumerate(strings):
if count_string_diff(template, candidate) == 1:
pair = [template, strings.pop(i)]
pair.sort()
pairs.append(pair)
break
return pairs |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'natural_sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '5', 'type': 'block', 'children': ['6', '15']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'dre'},{'id': '9', 'type': 'call', 'children': ['10', '13']},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'compile'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'string', 'children': [], 'value': "r'(\\d+)'"},{'id': '15', 'type': 'return_statement', 'children': ['16']},{'id': '16', 'type': 'list_comprehension', 'children': ['17', '32']},{'id': '17', 'type': 'conditional_expression', 'children': ['18', '22', '27'], 'value': 'if'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '22', 'type': 'call', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'isdigit'},{'id': '26', 'type': 'argument_list', 'children': []},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '31', 'type': 'argument_list', 'children': []},{'id': '32', 'type': 'for_in_clause', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '38', 'type': 'argument_list', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'dre'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'item'} | def natural_sort(item):
dre = re.compile(r'(\d+)')
return [int(s) if s.isdigit() else s.lower() for s in re.split(dre, item)] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_elementary_intervals'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '6', 'type': 'block', 'children': ['7', '11', '61', '71', '77']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '10', 'type': 'list', 'children': [], 'value': '[]'},{'id': '11', 'type': 'try_statement', 'children': ['12', '48']},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'for_statement', 'children': ['14', '15', '16']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'interval'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '16', 'type': 'block', 'children': ['17', '35']},{'id': '17', 'type': 'if_statement', 'children': ['18', '24']},{'id': '18', 'type': 'comparison_operator', 'children': ['19', '23'], 'value': '!='},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'interval'},{'id': '23', 'type': 'integer', 'children': [], 'value': '3'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'raise_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'binary_operator', 'children': ['30', '31'], 'value': '%'},{'id': '30', 'type': 'string', 'children': [], 'value': "'Interval malformed %s. Allways specify start and end position for interval.'"},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'interval'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'list', 'children': ['42', '45'], 'value': '[interval[0],interval[1]]'},{'id': '42', 'type': 'subscript', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'interval'},{'id': '44', 'type': 'integer', 'children': [], 'value': '0'},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'interval'},{'id': '47', 'type': 'integer', 'children': [], 'value': '1'},{'id': '48', 'type': 'except_clause', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'raise_statement', 'children': ['52']},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'SyntaxError'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'binary_operator', 'children': ['56', '57'], 'value': '%'},{'id': '56', 'type': 'string', 'children': [], 'value': "'Interval malformed %s. Allways specify start and end position for interval.'"},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'interval'},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'assignment', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'coords'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '76', 'type': 'argument_list', 'children': []},{'id': '77', 'type': 'return_statement', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'coords'} | def get_elementary_intervals(self, features):
coords = []
try:
for interval in features:
if len(interval) != 3:
raise SyntaxError('Interval malformed %s. Allways specify start and end position for interval.' % str(interval))
coords.extend([interval[0],interval[1]])
except IndexError:
raise SyntaxError('Interval malformed %s. Allways specify start and end position for interval.' % str(interval))
coords = list(set(coords))
coords.sort()
return coords |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'convtable2dict'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'convtable'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '21', '100']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'rdict'},{'id': '13', 'type': 'conditional_expression', 'children': ['14', '19', '20'], 'value': 'if'},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '20', 'type': 'dictionary', 'children': []},{'id': '21', 'type': 'for_statement', 'children': ['22', '23', '24']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'convtable'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'if_statement', 'children': ['26', '29', '45', '76']},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'in'},{'id': '27', 'type': 'string', 'children': [], 'value': "':uni'"},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'if_statement', 'children': ['31', '34']},{'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'in'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '34', 'type': 'block', 'children': ['35']},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '42']},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'rdict'},{'id': '39', 'type': 'subscript', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '41', 'type': 'string', 'children': [], 'value': "':uni'"},{'id': '42', 'type': 'subscript', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '45', 'type': 'elif_clause', 'children': ['46', '54']},{'id': '46', 'type': 'comparison_operator', 'children': ['47', '53'], 'value': '=='},{'id': '47', 'type': 'subscript', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '49', 'type': 'slice', 'children': ['50', '51']},{'id': '50', 'type': 'colon', 'children': []},{'id': '51', 'type': 'unary_operator', 'children': ['52'], 'value': '-'},{'id': '52', 'type': 'integer', 'children': [], 'value': '1'},{'id': '53', 'type': 'string', 'children': [], 'value': "'zh-han'"},{'id': '54', 'type': 'block', 'children': ['55']},{'id': '55', 'type': 'if_statement', 'children': ['56', '59']},{'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': 'in'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'for_statement', 'children': ['61', '62', '67']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'word'},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '66', 'type': 'argument_list', 'children': []},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '73']},{'id': '70', 'type': 'subscript', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'rdict'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'word'},{'id': '73', 'type': 'subscript', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '76', 'type': 'else_clause', 'children': ['77']},{'id': '77', 'type': 'block', 'children': ['78', '86']},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '81', 'type': 'call', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'fallback'},{'id': '83', 'type': 'argument_list', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'locale'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '86', 'type': 'for_statement', 'children': ['87', '88', '93']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'word'},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '92', 'type': 'argument_list', 'children': []},{'id': '93', 'type': 'block', 'children': ['94']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '99']},{'id': '96', 'type': 'subscript', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'rdict'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'word'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '100', 'type': 'return_statement', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'rdict'} | def convtable2dict(convtable, locale, update=None):
rdict = update.copy() if update else {}
for r in convtable:
if ':uni' in r:
if locale in r:
rdict[r[':uni']] = r[locale]
elif locale[:-1] == 'zh-han':
if locale in r:
for word in r.values():
rdict[word] = r[locale]
else:
v = fallback(locale, r)
for word in r.values():
rdict[word] = v
return rdict |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 're_sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '5', 'type': 'block', 'children': ['6', '17', '21', '38']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '20', 'type': 'dictionary', 'children': []},{'id': '21', 'type': 'for_statement', 'children': ['22', '25', '29']},{'id': '22', 'type': 'pattern_list', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'number'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '35']},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'number'},{'id': '35', 'type': 'subscript', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '38', 'type': 'return_statement', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'new_data'} | def re_sort(data):
keys = sorted(data.keys())
new_data = {}
for number, key in enumerate(keys):
new_data[number] = data[key]
return new_data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'natural_sorted'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '5', 'type': 'block', 'children': ['6', '34', '43']},{'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']},{'id': '7', 'type': 'function_name', 'children': [], 'value': 'sortkey'},{'id': '8', 'type': 'parameters', 'children': ['9']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '10', 'type': 'block', 'children': ['11']},{'id': '11', 'type': 'return_statement', 'children': ['12']},{'id': '12', 'type': 'list_comprehension', 'children': ['13', '25']},{'id': '13', 'type': '()', 'children': ['14']},{'id': '14', 'type': 'conditional_expression', 'children': ['15', '19', '24'], 'value': 'if'},{'id': '15', 'type': 'call', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '17', 'type': 'argument_list', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'isdigit'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '25', 'type': 'for_in_clause', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'numbers'},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'compile'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'string', 'children': [], 'value': "r'(\\d+)'"},{'id': '43', 'type': 'return_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'sortkey'} | def natural_sorted(iterable):
def sortkey(x):
return [(int(c) if c.isdigit() else c) for c in re.split(numbers, x)]
numbers = re.compile(r'(\d+)')
return sorted(iterable, key=sortkey) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_keys'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'QuerySet'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'},{'id': '11', 'type': 'block', 'children': ['12', '30', '50', '81']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'missing_keys'},{'id': '15', 'type': 'list_comprehension', 'children': ['16', '17', '20']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '17', 'type': 'for_in_clause', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '20', 'type': 'if_clause', 'children': ['21']},{'id': '21', 'type': 'not_operator', 'children': ['22']},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'subscript', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': '_reverse_index'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'keys_and_values'},{'id': '33', 'type': 'list_comprehension', 'children': ['34', '43', '46']},{'id': '34', 'type': 'tuple', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '36', 'type': 'subscript', 'children': ['37', '42']},{'id': '37', 'type': 'subscript', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': '_reverse_index'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '42', 'type': 'integer', 'children': [], 'value': '0'},{'id': '43', 'type': 'for_in_clause', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '46', 'type': 'if_clause', 'children': ['47']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': 'not'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'missing_keys'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'},{'id': '53', 'type': 'list_comprehension', 'children': ['54', '57']},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'kv'},{'id': '56', 'type': 'integer', 'children': [], 'value': '0'},{'id': '57', 'type': 'for_in_clause', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'kv'},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '61', 'type': 'argument_list', 'children': ['62', '63', '71']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'keys_and_values'},{'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '65', 'type': 'lambda', 'children': ['66', '68']},{'id': '66', 'type': 'lambda_parameters', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '68', 'type': 'subscript', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '70', 'type': 'integer', 'children': [], 'value': '1'},{'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '73', 'type': 'conditional_expression', 'children': ['74', '75', '80'], 'value': 'if'},{'id': '74', 'type': 'True', 'children': []},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': '=='},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'QuerySet'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'DESCENDING'},{'id': '80', 'type': 'False', 'children': []},{'id': '81', 'type': 'if_statement', 'children': ['82', '87', '92', '103']},{'id': '82', 'type': 'comparison_operator', 'children': ['83', '84'], 'value': '=='},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'QuerySet'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'return_statement', 'children': ['89']},{'id': '89', 'type': 'binary_operator', 'children': ['90', '91'], 'value': '+'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'missing_keys'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'},{'id': '92', 'type': 'elif_clause', 'children': ['93', '98']},{'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': '=='},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'QuerySet'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'DESCENDING'},{'id': '98', 'type': 'block', 'children': ['99']},{'id': '99', 'type': 'return_statement', 'children': ['100']},{'id': '100', 'type': 'binary_operator', 'children': ['101', '102'], 'value': '+'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'missing_keys'},{'id': '103', 'type': 'else_clause', 'children': ['104']},{'id': '104', 'type': 'block', 'children': ['105']},{'id': '105', 'type': 'raise_statement', 'children': ['106']},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'string', 'children': [], 'value': "'Unexpected order value: {:d}'"},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'order'} | def sort_keys(self, keys, order=QuerySet.ASCENDING):
missing_keys = [
key
for key in keys
if not len(self._reverse_index[key])
]
keys_and_values = [
(key, self._reverse_index[key][0])
for key in keys
if key not in missing_keys
]
sorted_keys = [
kv[0]
for kv in sorted(
keys_and_values,
key=lambda x: x[1],
reverse=True if order == QuerySet.DESCENDING else False)
]
if order == QuerySet.ASCENDING:
return missing_keys + sorted_keys
elif order == QuerySet.DESCENDING:
return sorted_keys + missing_keys
else:
raise ValueError('Unexpected order value: {:d}'.format(order)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'options'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '18', '27', '38']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '9', 'type': 'call', 'children': ['10', '17']},{'id': '10', 'type': 'attribute', 'children': ['11', '16']},{'id': '11', 'type': 'attribute', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': '__class__'},{'id': '15', 'type': 'identifier', 'children': [], 'value': '__dict__'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '17', 'type': 'argument_list', 'children': []},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': '__dict__'},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '37', 'type': 'argument_list', 'children': []},{'id': '38', 'type': 'for_statement', 'children': ['39', '40', '41']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '41', 'type': 'block', 'children': ['42', '51']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '51', 'type': 'if_statement', 'children': ['52', '55']},{'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': 'is'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '54', 'type': 'None', 'children': []},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'yield', 'children': ['58']},{'id': '58', 'type': 'expression_list', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'val'} | def options(self):
keys = self.__class__.__dict__.copy()
keys.update(self.__dict__)
keys = sorted(keys.keys())
for opt in keys:
val = self.get(opt)
if val is not None:
yield opt, val |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_tidy'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'type', 'children': ['6']},{'id': '6', 'type': 'None', 'children': []},{'id': '7', 'type': 'block', 'children': ['8']},{'id': '8', 'type': 'if_statement', 'children': ['9', '12', '22']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'no_overlap'},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'remove_overlap'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'no_contiguous'},{'id': '22', 'type': 'else_clause', 'children': ['23']},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': '_sort'},{'id': '29', 'type': 'argument_list', 'children': []} | def _tidy(self) -> None:
if self.no_overlap:
self.remove_overlap(self.no_contiguous)
else:
self._sort() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '29', '35']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'index_list_for_sort_order'},{'id': '3', 'type': 'parameters', 'children': ['4', '12', '24']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'generic_type', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '9', 'type': 'type_parameter', 'children': ['10']},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '12', 'type': 'typed_default_parameter', 'children': ['13', '14', '23']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '14', 'type': 'type', 'children': ['15']},{'id': '15', 'type': 'generic_type', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'Callable'},{'id': '17', 'type': 'type_parameter', 'children': ['18', '21']},{'id': '18', 'type': 'type', 'children': ['19']},{'id': '19', 'type': 'list', 'children': ['20'], 'value': '[Any]'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '21', 'type': 'type', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '23', 'type': 'None', 'children': []},{'id': '24', 'type': 'typed_default_parameter', 'children': ['25', '26', '28']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '26', 'type': 'type', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '28', 'type': 'False', 'children': []},{'id': '29', 'type': 'type', 'children': ['30']},{'id': '30', 'type': 'generic_type', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '32', 'type': 'type_parameter', 'children': ['33']},{'id': '33', 'type': 'type', 'children': ['34']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '35', 'type': 'block', 'children': ['36', '57', '73', '89']},{'id': '36', 'type': 'function_definition', 'children': ['37', '38', '49']},{'id': '37', 'type': 'function_name', 'children': [], 'value': 'key_with_user_func'},{'id': '38', 'type': 'parameters', 'children': ['39']},{'id': '39', 'type': 'typed_parameter', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'idx_val'},{'id': '41', 'type': 'type', 'children': ['42']},{'id': '42', 'type': 'generic_type', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'Tuple'},{'id': '44', 'type': 'type_parameter', 'children': ['45', '47']},{'id': '45', 'type': 'type', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '47', 'type': 'type', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'return_statement', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'idx_val'},{'id': '56', 'type': 'integer', 'children': [], 'value': '1'},{'id': '57', 'type': 'if_statement', 'children': ['58', '59', '64']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '59', 'type': 'block', 'children': ['60']},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'key_with_user_func'},{'id': '64', 'type': 'else_clause', 'children': ['65']},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'itemgetter'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'integer', 'children': [], 'value': '1'},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'index_value_list'},{'id': '76', 'type': 'call', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '78', 'type': 'argument_list', 'children': ['79', '83', '86']},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '83', 'type': 'keyword_argument', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '89', 'type': 'return_statement', 'children': ['90']},{'id': '90', 'type': 'list_comprehension', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '92', 'type': 'for_in_clause', 'children': ['93', '96']},{'id': '93', 'type': 'pattern_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '95', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'index_value_list'} | def index_list_for_sort_order(x: List[Any], key: Callable[[Any], Any] = None,
reverse: bool = False) -> List[int]:
def key_with_user_func(idx_val: Tuple[int, Any]):
return key(idx_val[1])
if key:
sort_key = key_with_user_func
else:
sort_key = itemgetter(1)
index_value_list = sorted(enumerate(x), key=sort_key, reverse=reverse)
return [i for i, _ in index_value_list] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20', '22']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_list_by_index_list'},{'id': '3', 'type': 'parameters', 'children': ['4', '12']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'generic_type', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '9', 'type': 'type_parameter', 'children': ['10']},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '12', 'type': 'typed_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '14', 'type': 'type', 'children': ['15']},{'id': '15', 'type': 'generic_type', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '17', 'type': 'type_parameter', 'children': ['18']},{'id': '18', 'type': 'type', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '20', 'type': 'type', 'children': ['21']},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '29']},{'id': '25', 'type': 'subscript', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '27', 'type': 'slice', 'children': ['28']},{'id': '28', 'type': 'colon', 'children': []},{'id': '29', 'type': 'list_comprehension', 'children': ['30', '33']},{'id': '30', 'type': 'subscript', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '33', 'type': 'for_in_clause', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'indexes'} | def sort_list_by_index_list(x: List[Any], indexes: List[int]) -> None:
x[:] = [x[i] for i in indexes] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12', '18']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'fetch_all_first_values'},{'id': '3', 'type': 'parameters', 'children': ['4', '8']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'Session'},{'id': '8', 'type': 'typed_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'select_statement'},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'Select'},{'id': '12', 'type': 'type', 'children': ['13']},{'id': '13', 'type': 'generic_type', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '15', 'type': 'type_parameter', 'children': ['16']},{'id': '16', 'type': 'type', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'Any'},{'id': '18', 'type': 'block', 'children': ['19', '28']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '22', 'type': 'call', 'children': ['23', '26']},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'select_statement'},{'id': '28', 'type': 'try_statement', 'children': ['29', '38']},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'return_statement', 'children': ['31']},{'id': '31', 'type': 'list_comprehension', 'children': ['32', '35']},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '34', 'type': 'integer', 'children': [], 'value': '0'},{'id': '35', 'type': 'for_in_clause', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '38', 'type': 'except_clause', 'children': ['39', '43']},{'id': '39', 'type': 'as_pattern', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '41', 'type': 'as_pattern_target', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '43', 'type': 'block', 'children': ['44']},{'id': '44', 'type': 'raise_statement', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'MultipleResultsFound'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'e'} | def fetch_all_first_values(session: Session,
select_statement: Select) -> List[Any]:
rows = session.execute(select_statement)
try:
return [row[0] for row in rows]
except ValueError as e:
raise MultipleResultsFound(str(e)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'atoi'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '8', 'type': 'type', 'children': ['9']},{'id': '9', 'type': 'generic_type', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'Union'},{'id': '11', 'type': 'type_parameter', 'children': ['12', '14']},{'id': '12', 'type': 'type', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '14', 'type': 'type', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'return_statement', 'children': ['18']},{'id': '18', 'type': 'conditional_expression', 'children': ['19', '23', '28'], 'value': 'if'},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '23', 'type': 'call', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'isdigit'},{'id': '27', 'type': 'argument_list', 'children': []},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'text'} | def atoi(text: str) -> Union[int, str]:
return int(text) if text.isdigit() else text |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'reducer_metro'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'metro'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '7', 'type': 'block', 'children': ['8', '17']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'lookup'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'CachedLookup'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'keyword_argument', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'precision'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'POI_GEOHASH_PRECISION'},{'id': '17', 'type': 'for_statement', 'children': ['18', '21', '25']},{'id': '18', 'type': 'pattern_list', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '25', 'type': 'block', 'children': ['26', '33']},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '32']},{'id': '28', 'type': 'pattern_list', 'children': ['29', '30', '31']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'type_tag'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'lonlat'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '33', 'type': 'if_statement', 'children': ['34', '37', '70']},{'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': '=='},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'type_tag'},{'id': '36', 'type': 'integer', 'children': [], 'value': '1'},{'id': '37', 'type': 'block', 'children': ['38']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'lookup'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'insert'},{'id': '43', 'type': 'argument_list', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '47', 'type': 'argument_list', 'children': ['48', '62']},{'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'geometry'},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '52', 'type': 'argument_list', 'children': ['53', '56']},{'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '55', 'type': 'string', 'children': [], 'value': "'Point'"},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'coordinates'},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'project'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'lonlat'},{'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'properties'},{'id': '64', 'type': 'call', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '70', 'type': 'else_clause', 'children': ['71']},{'id': '71', 'type': 'block', 'children': ['72', '79', '83', '95', '141']},{'id': '72', 'type': 'if_statement', 'children': ['73', '77']},{'id': '73', 'type': 'not_operator', 'children': ['74']},{'id': '74', 'type': 'attribute', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'lookup'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'data_store'},{'id': '77', 'type': 'block', 'children': ['78']},{'id': '78', 'type': 'return_statement', 'children': []},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'poi_names'},{'id': '82', 'type': 'list', 'children': [], 'value': '[]'},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '86', 'type': 'call', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '88', 'type': 'argument_list', 'children': ['89', '92']},{'id': '89', 'type': 'keyword_argument', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'buffer_size'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'POI_DISTANCE'},{'id': '92', 'type': 'keyword_argument', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'multiple'},{'id': '94', 'type': 'True', 'children': []},{'id': '95', 'type': 'for_statement', 'children': ['96', '97', '105']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'poi'},{'id': '97', 'type': 'call', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'lookup'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '101', 'type': 'argument_list', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'lonlat'},{'id': '103', 'type': 'dictionary_splat', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '105', 'type': 'block', 'children': ['106', '118']},{'id': '106', 'type': 'expression_statement', 'children': ['107']},{'id': '107', 'type': 'assignment', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'has_tag'},{'id': '109', 'type': 'list_comprehension', 'children': ['110', '115']},{'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': 'in'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '112', 'type': 'subscript', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'poi'},{'id': '114', 'type': 'string', 'children': [], 'value': "'tags'"},{'id': '115', 'type': 'for_in_clause', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'POI_TAGS'},{'id': '118', 'type': 'if_statement', 'children': ['119', '129']},{'id': '119', 'type': 'boolean_operator', 'children': ['120', '124'], 'value': 'and'},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'has_tag'},{'id': '124', 'type': 'comparison_operator', 'children': ['125', '126'], 'value': 'in'},{'id': '125', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'poi'},{'id': '128', 'type': 'string', 'children': [], 'value': "'tags'"},{'id': '129', 'type': 'block', 'children': ['130']},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'poi_names'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'subscript', 'children': ['137', '140']},{'id': '137', 'type': 'subscript', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'poi'},{'id': '139', 'type': 'string', 'children': [], 'value': "'tags'"},{'id': '140', 'type': 'string', 'children': [], 'value': "'name'"},{'id': '141', 'type': 'for_statement', 'children': ['142', '143', '147']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'poi'},{'id': '143', 'type': 'call', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'poi_names'},{'id': '147', 'type': 'block', 'children': ['148']},{'id': '148', 'type': 'expression_statement', 'children': ['149']},{'id': '149', 'type': 'yield', 'children': ['150']},{'id': '150', 'type': 'expression_list', 'children': ['151', '154']},{'id': '151', 'type': 'tuple', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'metro'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'poi'},{'id': '154', 'type': 'integer', 'children': [], 'value': '1'} | def reducer_metro(self, metro, values):
lookup = CachedLookup(precision=POI_GEOHASH_PRECISION)
for i, value in enumerate(values):
type_tag, lonlat, data = value
if type_tag == 1:
lookup.insert(i, dict(
geometry=dict(type='Point', coordinates=project(lonlat)),
properties=dict(tags=data)
))
else:
if not lookup.data_store:
return
poi_names = []
kwargs = dict(buffer_size=POI_DISTANCE, multiple=True)
for poi in lookup.get(lonlat, **kwargs):
has_tag = [ tag in poi['tags'] for tag in POI_TAGS ]
if any(has_tag) and 'name' in poi['tags']:
poi_names.append(poi['tags']['name'])
for poi in set(poi_names):
yield (metro, poi), 1 |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13', '19']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_file_extensions'},{'id': '3', 'type': 'parameters', 'children': ['4', '8']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '6', 'type': 'type', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '8', 'type': 'typed_default_parameter', 'children': ['9', '10', '12']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'reportevery'},{'id': '10', 'type': 'type', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '12', 'type': 'integer', 'children': [], 'value': '1'},{'id': '13', 'type': 'type', 'children': ['14']},{'id': '14', 'type': 'generic_type', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '16', 'type': 'type_parameter', 'children': ['17']},{'id': '17', 'type': 'type', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '19', 'type': 'block', 'children': ['20', '26', '30', '86']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'extensions'},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '25', 'type': 'argument_list', 'children': []},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '29', 'type': 'integer', 'children': [], 'value': '0'},{'id': '30', 'type': 'for_statement', 'children': ['31', '35', '41']},{'id': '31', 'type': 'pattern_list', 'children': ['32', '33', '34']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'dirs'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'walk'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '41', 'type': 'block', 'children': ['42', '46', '62']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'augmented_assignment', 'children': ['44', '45'], 'value': '+='},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '45', 'type': 'integer', 'children': [], 'value': '1'},{'id': '46', 'type': 'if_statement', 'children': ['47', '52']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '51'], 'value': '=='},{'id': '48', 'type': 'binary_operator', 'children': ['49', '50'], 'value': '%'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'reportevery'},{'id': '51', 'type': 'integer', 'children': [], 'value': '0'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '58', 'type': 'argument_list', 'children': ['59', '60', '61']},{'id': '59', 'type': 'string', 'children': [], 'value': '"Walking directory {}: {!r}"'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '62', 'type': 'for_statement', 'children': ['63', '64', '65']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '65', 'type': 'block', 'children': ['66', '79']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '71']},{'id': '68', 'type': 'pattern_list', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '71', 'type': 'call', 'children': ['72', '77']},{'id': '72', 'type': 'attribute', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'splitext'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'extensions'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '86', 'type': 'return_statement', 'children': ['87']},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '92', 'type': 'argument_list', 'children': ['93']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'extensions'} | def list_file_extensions(path: str, reportevery: int = 1) -> List[str]:
extensions = set()
count = 0
for root, dirs, files in os.walk(path):
count += 1
if count % reportevery == 0:
log.debug("Walking directory {}: {!r}", count, root)
for file in files:
filename, ext = os.path.splitext(file)
extensions.add(ext)
return sorted(list(extensions)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by_dependencies'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'exts'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'retry'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '19', '29', '43', '161']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '14']},{'id': '11', 'type': 'pattern_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted_ext'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'features_from_sorted'},{'id': '14', 'type': 'expression_list', 'children': ['15', '16']},{'id': '15', 'type': 'list', 'children': [], 'value': '[]'},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'pending'},{'id': '22', 'type': 'list_comprehension', 'children': ['23', '26']},{'id': '23', 'type': 'tuple', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '25', 'type': 'integer', 'children': [], 'value': '0'},{'id': '26', 'type': 'for_in_clause', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'exts'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'retry'},{'id': '32', 'type': 'conditional_expression', 'children': ['33', '39', '42'], 'value': 'if'},{'id': '33', 'type': 'binary_operator', 'children': ['34', '38'], 'value': '*'},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'exts'},{'id': '38', 'type': 'integer', 'children': [], 'value': '100'},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'is'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'retry'},{'id': '41', 'type': 'None', 'children': []},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'retry'},{'id': '43', 'type': 'while_statement', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'pending'},{'id': '45', 'type': 'block', 'children': ['46', '57', '89', '97']},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '51']},{'id': '48', 'type': 'pattern_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'cnt'},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'pending'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'integer', 'children': [], 'value': '0'},{'id': '57', 'type': 'if_statement', 'children': ['58', '71']},{'id': '58', 'type': 'boolean_operator', 'children': ['59', '65'], 'value': 'and'},{'id': '59', 'type': 'not_operator', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '62', 'type': 'argument_list', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'Extractor'},{'id': '65', 'type': 'not_operator', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'issubclass'},{'id': '68', 'type': 'argument_list', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'Extractor'},{'id': '71', 'type': 'block', 'children': ['72', '76']},{'id': '72', 'type': 'expression_statement', 'children': ['73']},{'id': '73', 'type': 'assignment', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '75', 'type': 'string', 'children': [], 'value': '"Only Extractor instances are allowed. Found {}."'},{'id': '76', 'type': 'raise_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '89', 'type': 'expression_statement', 'children': ['90']},{'id': '90', 'type': 'assignment', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '92', 'type': 'call', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'get_dependencies'},{'id': '96', 'type': 'argument_list', 'children': []},{'id': '97', 'type': 'if_statement', 'children': ['98', '104', '141']},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'difference'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'features_from_sorted'},{'id': '104', 'type': 'block', 'children': ['105', '130']},{'id': '105', 'type': 'if_statement', 'children': ['106', '111']},{'id': '106', 'type': 'comparison_operator', 'children': ['107', '110'], 'value': '>'},{'id': '107', 'type': 'binary_operator', 'children': ['108', '109'], 'value': '+'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'cnt'},{'id': '109', 'type': 'integer', 'children': [], 'value': '1'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'retry'},{'id': '111', 'type': 'block', 'children': ['112', '116']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '115', 'type': 'string', 'children': [], 'value': '"Maximun retry ({}) to sort achieved from extractor {}."'},{'id': '116', 'type': 'raise_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '124', 'type': 'argument_list', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'retry'},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'call', 'children': ['132', '135']},{'id': '132', 'type': 'attribute', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'pending'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'tuple', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '138', 'type': 'binary_operator', 'children': ['139', '140'], 'value': '+'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'cnt'},{'id': '140', 'type': 'integer', 'children': [], 'value': '1'},{'id': '141', 'type': 'else_clause', 'children': ['142']},{'id': '142', 'type': 'block', 'children': ['143', '150']},{'id': '143', 'type': 'expression_statement', 'children': ['144']},{'id': '144', 'type': 'call', 'children': ['145', '148']},{'id': '145', 'type': 'attribute', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'sorted_ext'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '148', 'type': 'argument_list', 'children': ['149']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'call', 'children': ['152', '155']},{'id': '152', 'type': 'attribute', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'features_from_sorted'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'call', 'children': ['157', '160']},{'id': '157', 'type': 'attribute', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'ext'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'get_features'},{'id': '160', 'type': 'argument_list', 'children': []},{'id': '161', 'type': 'return_statement', 'children': ['162']},{'id': '162', 'type': 'call', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'sorted_ext'} | def sort_by_dependencies(exts, retry=None):
sorted_ext, features_from_sorted = [], set()
pending = [(e, 0) for e in exts]
retry = len(exts) * 100 if retry is None else retry
while pending:
ext, cnt = pending.pop(0)
if not isinstance(ext, Extractor) and not issubclass(ext, Extractor):
msg = "Only Extractor instances are allowed. Found {}."
raise TypeError(msg.format(type(ext)))
deps = ext.get_dependencies()
if deps.difference(features_from_sorted):
if cnt + 1 > retry:
msg = "Maximun retry ({}) to sort achieved from extractor {}."
raise RuntimeError(msg.format(retry, type(ext)))
pending.append((ext, cnt + 1))
else:
sorted_ext.append(ext)
features_from_sorted.update(ext.get_features())
return tuple(sorted_ext) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_layers'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '11']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '10', 'type': 'identifier', 'children': [], 'value': '_layers'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '16', 'type': 'argument_list', 'children': ['17', '24']},{'id': '17', 'type': 'call', 'children': ['18', '23']},{'id': '18', 'type': 'attribute', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': '_layers'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '26', 'type': 'lambda', 'children': ['27', '29']},{'id': '27', 'type': 'lambda_parameters', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '29', 'type': 'subscript', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '31', 'type': 'integer', 'children': [], 'value': '0'} | def _sort_layers(self):
self._layers = OrderedDict(sorted(self._layers.items(), key=lambda t: t[0])) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_sections'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '6', 'type': 'block', 'children': ['7', '19', '41', '67', '79']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'order_lc'},{'id': '10', 'type': 'list_comprehension', 'children': ['11', '16']},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'lower'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'for_in_clause', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '24', 'type': 'generator_expression', 'children': ['25', '32', '35']},{'id': '25', 'type': 'tuple', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '27', 'type': 'subscript', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '32', 'type': 'for_in_clause', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'order_lc'},{'id': '35', 'type': 'if_clause', 'children': ['36']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'in'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '46', 'type': 'generator_expression', 'children': ['47', '54', '63']},{'id': '47', 'type': 'tuple', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '49', 'type': 'subscript', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '56', 'type': 'call', 'children': ['57', '62']},{'id': '57', 'type': 'attribute', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'if_clause', 'children': ['64']},{'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'not'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'order_lc'},{'id': '67', 'type': 'assert_statement', 'children': ['68']},{'id': '68', 'type': 'comparison_operator', 'children': ['69', '75'], 'value': '=='},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '77', 'type': 'argument_list', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'sections'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'sections'} | def sort_sections(self, order):
order_lc = [e.lower() for e in order]
sections = OrderedDict( (k,self.sections[k]) for k in order_lc if k in self.sections)
sections.update( (k,self.sections[k]) for k in self.sections.keys() if k not in order_lc)
assert len(self.sections) == len(sections)
self.sections = sections |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'split_iterable_as_iterable'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '6', 'type': 'block', 'children': ['7', '17', '23', '64', '75']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'cache'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'function_definition', 'children': ['24', '25', '27']},{'id': '24', 'type': 'function_name', 'children': [], 'value': 'get_value'},{'id': '25', 'type': 'parameters', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'ti'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'try_statement', 'children': ['29', '37']},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'return_statement', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'cache'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ti'},{'id': '37', 'type': 'except_clause', 'children': ['38']},{'id': '38', 'type': 'block', 'children': ['39']},{'id': '39', 'type': 'while_statement', 'children': ['40', '41']},{'id': '40', 'type': 'True', 'children': []},{'id': '41', 'type': 'block', 'children': ['42', '51', '58']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '47']},{'id': '44', 'type': 'pattern_list', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'next'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '51', 'type': 'if_statement', 'children': ['52', '55']},{'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': '=='},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'ti'},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'return_statement', 'children': ['57']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '63']},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'cache'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'iter'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'attribute', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'sorter'},{'id': '75', 'type': 'for_statement', 'children': ['76', '77', '80']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'yield', 'children': ['83']},{'id': '83', 'type': 'generator_expression', 'children': ['84', '88']},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'get_value'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '88', 'type': 'for_in_clause', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'islice'},{'id': '94', 'type': 'argument_list', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'c'} | def split_iterable_as_iterable(self, values):
values = iter(enumerate(values))
cache = dict()
def get_value(ti):
try:
return cache.pop(ti)
except:
while True:
i, v = next(values)
if i==ti:
return v
cache[i] = v
s = iter(self.index.sorter)
for c in self.count:
yield (get_value(i) for i in itertools.islice(s, int(c))) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'as_index'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '10', '13', '16']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'semantics'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'axis_default'},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '12', 'type': 'False', 'children': []},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '15', 'type': 'True', 'children': []},{'id': '16', 'type': 'default_parameter', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'lex_as_struct'},{'id': '18', 'type': 'False', 'children': []},{'id': '19', 'type': 'block', 'children': ['20', '49', '75', '93', '106']},{'id': '20', 'type': 'if_statement', 'children': ['21', '26']},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '23', 'type': 'argument_list', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'Index'},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'if_statement', 'children': ['28', '38', '45']},{'id': '28', 'type': 'boolean_operator', 'children': ['29', '35'], 'value': 'and'},{'id': '29', 'type': 'comparison_operator', 'children': ['30', '34'], 'value': 'is'},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'BaseIndex'},{'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': '=='},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '37', 'type': 'False', 'children': []},{'id': '38', 'type': 'block', 'children': ['39']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '45', 'type': 'else_clause', 'children': ['46']},{'id': '46', 'type': 'block', 'children': ['47']},{'id': '47', 'type': 'return_statement', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '49', 'type': 'if_statement', 'children': ['50', '55']},{'id': '50', 'type': 'call', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '52', 'type': 'argument_list', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '55', 'type': 'block', 'children': ['56']},{'id': '56', 'type': 'if_statement', 'children': ['57', '58', '67']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'lex_as_struct'},{'id': '58', 'type': 'block', 'children': ['59']},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'as_struct_array'},{'id': '64', 'type': 'argument_list', 'children': ['65']},{'id': '65', 'type': 'list_splat', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '67', 'type': 'else_clause', 'children': ['68']},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'return_statement', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'LexIndex'},{'id': '72', 'type': 'argument_list', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '75', 'type': 'try_statement', 'children': ['76', '86']},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '80', 'type': 'call', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'asarray'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '86', 'type': 'except_clause', 'children': ['87']},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'raise_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'string', 'children': [], 'value': "'Given object does not form a valid set of keys'"},{'id': '93', 'type': 'if_statement', 'children': ['94', '97']},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': 'is'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '96', 'type': 'None', 'children': []},{'id': '97', 'type': 'block', 'children': ['98']},{'id': '98', 'type': 'expression_statement', 'children': ['99']},{'id': '99', 'type': 'assignment', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'flatten'},{'id': '105', 'type': 'argument_list', 'children': []},{'id': '106', 'type': 'if_statement', 'children': ['107', '112', '131']},{'id': '107', 'type': 'comparison_operator', 'children': ['108', '111'], 'value': '=='},{'id': '108', 'type': 'attribute', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'ndim'},{'id': '111', 'type': 'integer', 'children': [], 'value': '1'},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'if_statement', 'children': ['114', '115', '121']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'return_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'BaseIndex'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '121', 'type': 'else_clause', 'children': ['122']},{'id': '122', 'type': 'block', 'children': ['123']},{'id': '123', 'type': 'return_statement', 'children': ['124']},{'id': '124', 'type': 'call', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'Index'},{'id': '126', 'type': 'argument_list', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '131', 'type': 'else_clause', 'children': ['132']},{'id': '132', 'type': 'block', 'children': ['133']},{'id': '133', 'type': 'return_statement', 'children': ['134']},{'id': '134', 'type': 'call', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'ObjectIndex'},{'id': '136', 'type': 'argument_list', 'children': ['137', '138', '139']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '139', 'type': 'keyword_argument', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'stable'} | def as_index(keys, axis=semantics.axis_default, base=False, stable=True, lex_as_struct=False):
if isinstance(keys, Index):
if type(keys) is BaseIndex and base==False:
keys = keys.keys
else:
return keys
if isinstance(keys, tuple):
if lex_as_struct:
keys = as_struct_array(*keys)
else:
return LexIndex(keys, stable)
try:
keys = np.asarray(keys)
except:
raise TypeError('Given object does not form a valid set of keys')
if axis is None:
keys = keys.flatten()
if keys.ndim==1:
if base:
return BaseIndex(keys)
else:
return Index(keys, stable=stable)
else:
return ObjectIndex(keys, axis, stable=stable) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'axis_as_object'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '7', 'type': 'unary_operator', 'children': ['8'], 'value': '-'},{'id': '8', 'type': 'integer', 'children': [], 'value': '1'},{'id': '9', 'type': 'block', 'children': ['10', '16', '34', '46', '59']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'ascontiguousarray'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'rollaxis'},{'id': '28', 'type': 'argument_list', 'children': ['29', '30', '31']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'ndim'},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'nbytes'},{'id': '37', 'type': 'binary_operator', 'children': ['38', '43'], 'value': '*'},{'id': '38', 'type': 'attribute', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'itemsize'},{'id': '43', 'type': 'subscript', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'voidtype'},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'tuple', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'void'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'nbytes'},{'id': '59', 'type': 'return_statement', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '69']},{'id': '61', 'type': 'attribute', 'children': ['62', '68']},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'arr'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'view'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'voidtype'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '74']},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'delete'},{'id': '74', 'type': 'argument_list', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'axis'} | def axis_as_object(arr, axis=-1):
shape = arr.shape
arr = np.ascontiguousarray(np.rollaxis(arr, axis, arr.ndim))
nbytes = arr.dtype.itemsize * shape[axis]
voidtype = np.dtype((np.void, nbytes))
return arr.view(voidtype).reshape(np.delete(shape, axis)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'rank'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'semantics'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'axis_default'},{'id': '10', 'type': 'block', 'children': ['11', '19']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'as_index'},{'id': '16', 'type': 'argument_list', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'axis'},{'id': '19', 'type': 'return_statement', 'children': ['20']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'rank'} | def rank(keys, axis=semantics.axis_default):
index = as_index(keys, axis)
return index.rank |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '5', 'type': 'block', 'children': ['6', '16', '28']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'partial'},{'id': '11', 'type': 'argument_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '13', 'type': 'keyword_argument', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '21', 'type': 'dictionary', 'children': ['22']},{'id': '22', 'type': 'pair', 'children': ['23', '24']},{'id': '23', 'type': 'string', 'children': [], 'value': "'descending'"},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': '_descending_sort_by'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'function'},{'id': '28', 'type': 'return_statement', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'f'} | def sort_by(function):
f = partial(sorted, key=function)
f.attrs = {'descending': _descending_sort_by(function)}
return f |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'in_sorted'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '6', 'type': 'block', 'children': ['7', '17', '27']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'bisect'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'bisect_left'},{'id': '14', 'type': 'argument_list', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '17', 'type': 'if_statement', 'children': ['18', '24']},{'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': '>='},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'return_statement', 'children': ['26']},{'id': '26', 'type': 'False', 'children': []},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'comparison_operator', 'children': ['29', '32'], 'value': '=='},{'id': '29', 'type': 'subscript', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'value'} | def in_sorted(values, value):
index = bisect.bisect_left(values, value)
if index >= len(values):
return False
return values[index] == value |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'handle_keypress'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '6', 'type': 'block', 'children': ['7']},{'id': '7', 'type': 'if_statement', 'children': ['8', '11', '24', '37', '50']},{'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': '=='},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '10', 'type': 'string', 'children': [], 'value': '"esc"'},{'id': '11', 'type': 'block', 'children': ['12', '18']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'save_file'},{'id': '17', 'type': 'argument_list', 'children': []},{'id': '18', 'type': 'raise_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'urwid'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'ExitMainLoop'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'elif_clause', 'children': ['25', '28']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': '=='},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '27', 'type': 'string', 'children': [], 'value': '"delete"'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '36']},{'id': '31', 'type': 'attribute', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'walker'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'combine_focus_with_next'},{'id': '36', 'type': 'argument_list', 'children': []},{'id': '37', 'type': 'elif_clause', 'children': ['38', '41']},{'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '=='},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '40', 'type': 'string', 'children': [], 'value': '"backspace"'},{'id': '41', 'type': 'block', 'children': ['42']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '49']},{'id': '44', 'type': 'attribute', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'walker'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'combine_focus_with_prev'},{'id': '49', 'type': 'argument_list', 'children': []},{'id': '50', 'type': 'elif_clause', 'children': ['51', '54']},{'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': '=='},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '53', 'type': 'string', 'children': [], 'value': '"enter"'},{'id': '54', 'type': 'block', 'children': ['55', '63', '73']},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '62']},{'id': '57', 'type': 'attribute', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'walker'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'split_focus'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'call', 'children': ['65', '70']},{'id': '65', 'type': 'attribute', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'view'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'keypress'},{'id': '70', 'type': 'argument_list', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'size'},{'id': '72', 'type': 'string', 'children': [], 'value': '"down"'},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'call', 'children': ['75', '80']},{'id': '75', 'type': 'attribute', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'view'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'keypress'},{'id': '80', 'type': 'argument_list', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'size'},{'id': '82', 'type': 'string', 'children': [], 'value': '"home"'} | def handle_keypress(self, k):
if k == "esc":
self.save_file()
raise urwid.ExitMainLoop()
elif k == "delete":
self.walker.combine_focus_with_next()
elif k == "backspace":
self.walker.combine_focus_with_prev()
elif k == "enter":
self.walker.split_focus()
self.view.keypress(size, "down")
self.view.keypress(size, "home") |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'fsort'},{'id': '6', 'type': 'block', 'children': ['7', '9', '23', '31']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'string', 'children': [], 'value': "'''\n Allows to add one or more sort on specific fields. Each sort can be reversed as well. The sort is defined on a per field level, with special field name for _score to sort by score.\n '''"},{'id': '9', 'type': 'if_statement', 'children': ['10', '14']},{'id': '10', 'type': 'not_operator', 'children': ['11']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '30']},{'id': '25', 'type': 'subscript', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '29', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'fsort'},{'id': '31', 'type': 'return_statement', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'} | def sorted(self, fsort):
'''
Allows to add one or more sort on specific fields. Each sort can be reversed as well. The sort is defined on a per field level, with special field name for _score to sort by score.
'''
if not self.params:
self.params = dict()
self.params['sort'] = fsort
return self |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_filter_sources'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '6', 'type': 'block', 'children': ['7', '15', '41']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '12']},{'id': '9', 'type': 'pattern_list', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'filtered'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'hosts'},{'id': '12', 'type': 'expression_list', 'children': ['13', '14']},{'id': '13', 'type': 'list', 'children': [], 'value': '[]'},{'id': '14', 'type': 'list', 'children': [], 'value': '[]'},{'id': '15', 'type': 'for_statement', 'children': ['16', '17', '18']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'sources'},{'id': '18', 'type': 'block', 'children': ['19', '25', '32']},{'id': '19', 'type': 'if_statement', 'children': ['20', '23']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'in'},{'id': '21', 'type': 'string', 'children': [], 'value': "'error'"},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'continue_statement', 'children': []},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'filtered'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'hosts'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '40', 'type': 'string', 'children': [], 'value': "'host_name'"},{'id': '41', 'type': 'return_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '44', 'type': 'argument_list', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'filtered'},{'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '48', 'type': 'lambda', 'children': ['49', '51']},{'id': '49', 'type': 'lambda_parameters', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '51', 'type': 'call', 'children': ['52', '60']},{'id': '52', 'type': 'attribute', 'children': ['53', '59']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '56', 'type': 'identifier', 'children': [], 'value': '_hosts_by_success'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'hosts'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '63', 'type': 'string', 'children': [], 'value': "'host_name'"} | def _filter_sources(self, sources):
filtered, hosts = [], []
for source in sources:
if 'error' in source:
continue
filtered.append(source)
hosts.append(source['host_name'])
return sorted(filtered, key=lambda s:
self._hosts_by_success(hosts).index(s['host_name'])) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_cantons'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '9', 'type': 'argument_list', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'list_comprehension', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'canton'},{'id': '20', 'type': 'for_in_clause', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'location'},{'id': '22', 'type': 'call', 'children': ['23', '30']},{'id': '23', 'type': 'attribute', 'children': ['24', '29']},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'get_locations'},{'id': '28', 'type': 'argument_list', 'children': []},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '30', 'type': 'argument_list', 'children': []} | def get_cantons(self):
return sorted(list(set([
location.canton for location in self.get_locations().values()
]))) |
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return sorted(list(set([
location.municipality for location in self.get_locations().values()
]))) |
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'''"},{'id': '13', 'type': 'try_statement', 'children': ['14', '26']},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '22']},{'id': '17', 'type': 'attribute', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'execute'},{'id': '22', 'type': 'argument_list', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'sql'},{'id': '24', 'type': 'list_splat', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '26', 'type': 'except_clause', 'children': ['27', '32', '33']},{'id': '27', 'type': 'attribute', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'sqlite3'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'InterfaceError'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'raise_statement', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '41']},{'id': '36', 'type': 'attribute', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'sqlite3'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'InterfaceError'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'binary_operator', 'children': ['43', '47'], 'value': '+'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'unicode'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '47', 'type': 'string', 'children': [], 'value': "'\\nTry converting types or pickling.'"},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '51', 'type': 'call', 'children': ['52', '57']},{'id': '52', 'type': 'attribute', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'fetchall'},{'id': '57', 'type': 'argument_list', 'children': []},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '62', 'type': 'identifier', 'children': [], 'value': '__commit_if_necessary'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '65', 'type': 'if_statement', 'children': ['66', '73', '76']},{'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': '=='},{'id': '67', 'type': 'None', 'children': []},{'id': '68', 'type': 'attribute', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'return_statement', 'children': ['75']},{'id': '75', 'type': 'None', 'children': []},{'id': '76', 'type': 'else_clause', 'children': ['77']},{'id': '77', 'type': 'block', 'children': ['78', '97', '112']},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'assignment', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'colnames'},{'id': '81', 'type': 'list_comprehension', 'children': ['82', '90']},{'id': '82', 'type': 'call', 'children': ['83', '88']},{'id': '83', 'type': 'attribute', 'children': ['84', '87']},{'id': '84', 'type': 'subscript', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '86', 'type': 'integer', 'children': [], 'value': '0'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'decode'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '90', 'type': 'for_in_clause', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '92', 'type': 'attribute', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'description'},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'rawdata'},{'id': '100', 'type': 'list_comprehension', 'children': ['101', '109']},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '106', 'type': 'argument_list', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'colnames'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '109', 'type': 'for_in_clause', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '112', 'type': 'return_statement', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'rawdata'} | def execute(self, sql, *args, **kwargs):
'''
Run raw SQL on the database, and receive relaxing output.
This is sort of the foundational method that most of the
others build on.
'''
try:
self.cursor.execute(sql, *args)
except self.sqlite3.InterfaceError, msg:
raise self.sqlite3.InterfaceError(unicode(msg) + '\nTry converting types or pickling.')
rows = self.cursor.fetchall()
self.__commit_if_necessary(kwargs)
if None == self.cursor.description:
return None
else:
colnames = [d[0].decode('utf-8') for d in self.cursor.description]
rawdata = [OrderedDict(zip(colnames,row)) for row in rows]
return rawdata |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_message'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '7', 'type': 'block', 'children': ['8', '29', '39', '50', '61', '65', '74', '98']},{'id': '8', 'type': 'if_statement', 'children': ['9', '16']},{'id': '9', 'type': 'call', 'children': ['10', '13']},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15']},{'id': '14', 'type': 'string', 'children': [], 'value': '"allow_empty"'},{'id': '15', 'type': 'False', 'children': []},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'if_statement', 'children': ['18', '26']},{'id': '18', 'type': 'boolean_operator', 'children': ['19', '21'], 'value': 'or'},{'id': '19', 'type': 'not_operator', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'isspace'},{'id': '25', 'type': 'argument_list', 'children': []},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'list', 'children': [], 'value': '[]'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '36', 'type': 'argument_list', 'children': ['37', '38']},{'id': '37', 'type': 'string', 'children': [], 'value': 'r"\\r\\n|\\r|\\n"'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': '_check_1st_line'},{'id': '44', 'type': 'argument_list', 'children': ['45', '48']},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 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'expression_statement', 'children': ['62']},{'id': '62', 'type': 'augmented_assignment', 'children': ['63', '64'], 'value': '+='},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'err'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'augmented_assignment', 'children': ['67', '68'], 'value': '+='},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': '_check_signatures'},{'id': '70', 'type': 'argument_list', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'signature_lines'},{'id': '72', 'type': 'dictionary_splat', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '74', 'type': 'function_definition', 'children': ['75', '76', '80']},{'id': '75', 'type': 'function_name', 'children': [], 'value': '_format'},{'id': '76', 'type': 'parameters', 'children': ['77', '78', '79']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'lineno'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'return_statement', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'string', 'children': [], 'value': '"{0}: {1} {2}"'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '86', 'type': 'argument_list', 'children': ['87', '88', '89']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'lineno'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '89', 'type': 'call', 'children': ['90', '95']},{'id': '90', 'type': 'attribute', 'children': ['91', '94']},{'id': '91', 'type': 'subscript', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': '_messages_codes'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'list_splat', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '98', 'type': 'return_statement', 'children': ['99']},{'id': '99', 'type': 'call', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '101', 'type': 'argument_list', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '104', 'type': 'argument_list', 'children': ['105', '122']},{'id': '105', 'type': 'lambda', 'children': ['106', '108']},{'id': '106', 'type': 'lambda_parameters', 'children': ['107']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': '_format'},{'id': '110', 'type': 'argument_list', 'children': ['111', '114', '117']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '113', 'type': 'integer', 'children': [], 'value': '0'},{'id': '114', 'type': 'subscript', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '116', 'type': 'integer', 'children': [], 'value': '1'},{'id': '117', 'type': 'subscript', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '119', 'type': 'slice', 'children': ['120', '121']},{'id': '120', 'type': 'integer', 'children': [], 'value': '2'},{'id': '121', 'type': 'colon', 'children': []},{'id': '122', 'type': 'call', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '124', 'type': 'argument_list', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '128', 'type': 'lambda', 'children': ['129', '131']},{'id': '129', 'type': 'lambda_parameters', 'children': ['130']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '131', 'type': 'subscript', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '133', 'type': 'integer', 'children': [], 'value': '0'} | def check_message(message, **kwargs):
if kwargs.pop("allow_empty", False):
if not message or message.isspace():
return []
lines = re.split(r"\r\n|\r|\n", message)
errors = _check_1st_line(lines[0], **kwargs)
err, signature_lines = _check_bullets(lines, **kwargs)
errors += err
errors += _check_signatures(signature_lines, **kwargs)
def _format(code, lineno, args):
return "{0}: {1} {2}".format(lineno,
code,
_messages_codes[code].format(*args))
return list(map(lambda x: _format(x[0], x[1], x[2:]),
sorted(errors, key=lambda x: x[0]))) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_getArrays'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'defaultValue'},{'id': '7', 'type': 'block', 'children': ['8', '21', '43', '67']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'list_comprehension', 'children': ['15', '18']},{'id': '15', 'type': 'tuple', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '17', 'type': 'list', 'children': [], 'value': '[]'},{'id': '18', 'type': 'for_in_clause', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '21', 'type': 'for_statement', 'children': ['22', '23', '24']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'for_statement', 'children': ['26', '27', '28']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '36']},{'id': '31', 'type': 'attribute', 'children': ['32', '35']},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '39', 'type': 'argument_list', 'children': ['40', '41', '42']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'defaultValue'},{'id': '43', 'type': 'for_statement', 'children': ['44', '45', '53']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '45', 'type': 'list_comprehension', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '47', 'type': 'for_in_clause', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'viewkeys'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '59']},{'id': '56', 'type': 'subscript', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'numpy'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'subscript', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '67', 'type': 'return_statement', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'arrays'} | def _getArrays(items, attr, defaultValue):
arrays = dict([(key, []) for key in attr])
for item in items:
for key in attr:
arrays[key].append(getattr(item, key, defaultValue))
for key in [_ for _ in viewkeys(arrays)]:
arrays[key] = numpy.array(arrays[key])
return arrays |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_log_board_ports'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'ports'},{'id': '6', 'type': 'block', 'children': ['7', '26']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'ports'},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '12', 'type': 'argument_list', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'ports'},{'id': '14', 'type': 'keyword_argument', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '16', 'type': 'lambda', 'children': ['17', '19']},{'id': '17', 'type': 'lambda_parameters', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '19', 'type': 'tuple', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'tile_id'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'port'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': '_logln'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'string', 'children': [], 'value': "'ports: {0}'"},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'string', 'children': [], 'value': "' '"},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '41', 'type': 'generator_expression', 'children': ['42', '58']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'string', 'children': [], 'value': "'{}({} {})'"},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '46', 'type': 'argument_list', 'children': ['47', '52', '55']},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'tile_id'},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '58', 'type': 'for_in_clause', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'ports'} | def _log_board_ports(self, ports):
ports = sorted(ports, key=lambda port: (port.tile_id, port.direction))
self._logln('ports: {0}'.format(' '.join('{}({} {})'.format(p.type.value, p.tile_id, p.direction)
for p in ports))) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '6', 'type': 'block', 'children': ['7', '26']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '12', 'type': 'call', 'children': ['13', '25']},{'id': '13', 'type': 'attribute', 'children': ['14', '24']},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'Sorter'},{'id': '16', 'type': 'argument_list', 'children': ['17', '20', '23']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'attr'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'sort_entries'},{'id': '25', 'type': 'argument_list', 'children': []},{'id': '26', 'type': 'return_statement', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'} | def sort(self, attr):
self.entries = Sorter(self.entries, self.category, attr).sort_entries()
return self |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_visit'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'marked'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'tempmarked'},{'id': '8', 'type': 'block', 'children': ['9', '14', '24']},{'id': '9', 'type': 'assert_statement', 'children': ['10']},{'id': '10', 'type': 'not_operator', 'children': ['11']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'is_pseudo'},{'id': '14', 'type': 'if_statement', 'children': ['15', '18']},{'id': '15', 'type': 'comparison_operator', 'children': ['16', '17'], 'value': 'in'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'tempmarked'},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'raise_statement', 'children': ['20']},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'string', 'children': [], 'value': "'feature graph is cyclic'"},{'id': '24', 'type': 'if_statement', 'children': ['25', '28']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'not'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'marked'},{'id': '28', 'type': 'block', 'children': ['29', '35', '41', '64', '83', '104', '110', '114']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '34']},{'id': '31', 'type': 'subscript', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'tempmarked'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '34', 'type': 'True', 'children': []},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '40', 'type': 'argument_list', 'children': []},{'id': '41', 'type': 'if_statement', 'children': ['42', '51']},{'id': '42', 'type': 'boolean_operator', 'children': ['43', '48'], 'value': 'and'},{'id': '43', 'type': 'comparison_operator', 'children': ['44', '47'], 'value': 'is'},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '47', 'type': 'None', 'children': []},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'is_toplevel'},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '64', 'type': 'if_statement', 'children': ['65', '70']},{'id': '65', 'type': 'comparison_operator', 'children': ['66', '69'], 'value': 'is'},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '69', 'type': 'None', 'children': []},{'id': '70', 'type': 'block', 'children': ['71']},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '83', 'type': 'if_statement', 'children': ['84', '90']},{'id': '84', 'type': 'comparison_operator', 'children': ['85', '89'], 'value': '>'},{'id': '85', 'type': 'call', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '89', 'type': 'integer', 'children': [], 'value': '0'},{'id': '90', 'type': 'block', 'children': ['91']},{'id': '91', 'type': 'for_statement', 'children': ['92', '93', '94']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'features'},{'id': '94', 'type': 'block', 'children': ['95']},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'call', 'children': ['97', '100']},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '99', 'type': 'identifier', 'children': [], 'value': '_visit'},{'id': '100', 'type': 'argument_list', 'children': ['101', '102', '103']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'marked'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'tempmarked'},{'id': '104', 'type': 'expression_statement', 'children': ['105']},{'id': '105', 'type': 'assignment', 'children': ['106', '109']},{'id': '106', 'type': 'subscript', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'marked'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '109', 'type': 'True', 'children': []},{'id': '110', 'type': 'delete_statement', 'children': ['111']},{'id': '111', 'type': 'subscript', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'tempmarked'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'L'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'insert'},{'id': '119', 'type': 'argument_list', 'children': ['120', '121']},{'id': '120', 'type': 'integer', 'children': [], 'value': '0'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'self'} | def _visit(self, L, marked, tempmarked):
assert not self.is_pseudo
if self in tempmarked:
raise Exception('feature graph is cyclic')
if self not in marked:
tempmarked[self] = True
features = list()
if self.siblings is not None and self.is_toplevel:
features.extend(reversed(self.siblings))
if self.children is not None:
features.extend(reversed(self.children))
if len(features) > 0:
for feature in features:
feature._visit(L, marked, tempmarked)
marked[self] = True
del tempmarked[self]
L.insert(0, self) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'pseudoify'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '10', '14', '25', '31', '49', '67', '74', '80', '88', '96', '104', '123', '134', '145']},{'id': '6', 'type': 'assert_statement', 'children': ['7']},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'is_toplevel'},{'id': '10', 'type': 'assert_statement', 'children': ['11']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'is_multi'},{'id': '14', 'type': 'assert_statement', 'children': ['15']},{'id': '15', 'type': 'comparison_operator', 'children': ['16', '24'], 'value': '>'},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'attribute', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'multi_rep'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '24', 'type': 'integer', 'children': [], 'value': '0'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'multi_rep'},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'list_comprehension', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '43', 'type': 'binary_operator', 'children': ['44', '47'], 'value': '+'},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '47', 'type': 'list', 'children': ['48'], 'value': '[rep]'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '52', 'type': 'call', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'list_comprehension', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '59', 'type': 'for_in_clause', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '61', 'type': 'binary_operator', 'children': ['62', '65'], 'value': '+'},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '65', 'type': 'list', 'children': ['66'], 'value': '[rep]'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'assignment', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'Feature'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'None', 'children': []},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '78', 'type': 'identifier', 'children': [], 'value': '_pseudo'},{'id': '79', 'type': 'True', 'children': []},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '84', 'type': 'identifier', 'children': [], 'value': '_seqid'},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '87', 'type': 'identifier', 'children': [], 'value': '_seqid'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'set_coord'},{'id': '93', 'type': 'argument_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '100', 'type': 'identifier', 'children': [], 'value': '_strand'},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '103', 'type': 'identifier', 'children': [], 'value': '_strand'},{'id': '104', 'type': 'for_statement', 'children': ['105', '106', '112']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'sibling'},{'id': '106', 'type': 'binary_operator', 'children': ['107', '110'], 'value': '+'},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '110', 'type': 'list', 'children': ['111'], 'value': '[rep]'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'add_child'},{'id': '118', 'type': 'argument_list', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'sibling'},{'id': '120', 'type': 'keyword_argument', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'rangecheck'},{'id': '122', 'type': 'True', 'children': []},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'assignment', 'children': ['125', '128']},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '128', 'type': 'call', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'attribute', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'parent'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '139']},{'id': '136', 'type': 'attribute', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '139', 'type': 'call', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '141', 'type': 'argument_list', 'children': ['142']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'rep'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'siblings'},{'id': '145', 'type': 'return_statement', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'parent'} | def pseudoify(self):
assert self.is_toplevel
assert self.is_multi
assert len(self.multi_rep.siblings) > 0
rep = self.multi_rep
start = min([s.start for s in rep.siblings + [rep]])
end = max([s.end for s in rep.siblings + [rep]])
parent = Feature(None)
parent._pseudo = True
parent._seqid = self._seqid
parent.set_coord(start, end)
parent._strand = self._strand
for sibling in rep.siblings + [rep]:
parent.add_child(sibling, rangecheck=True)
parent.children = sorted(parent.children)
rep.siblings = sorted(rep.siblings)
return parent |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'attribute_crawl'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '6', 'type': 'block', 'children': ['7', '13', '44']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'union'},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '12', 'type': 'argument_list', 'children': []},{'id': '13', 'type': 'for_statement', 'children': ['14', '15', '16']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'block', 'children': ['17', '29']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'get_attribute'},{'id': '24', 'type': 'argument_list', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'as_list'},{'id': '28', 'type': 'True', 'children': []},{'id': '29', 'type': 'if_statement', 'children': ['30', '33']},{'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': 'is'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '32', 'type': 'None', 'children': []},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'union'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '44', 'type': 'return_statement', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'union'} | def attribute_crawl(self, key):
union = set()
for feature in self:
values = feature.get_attribute(key, as_list=True)
if values is not None:
union.update(set(values))
return union |
Subsets and Splits