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'[BedArrayStream(r1s),BedArrayStream(r2s)]'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'BedArrayStream'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'r1s'},{'id': '49', 'type': 'call', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'BedArrayStream'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'r2s'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'tot1'},{'id': '56', 'type': 'integer', 'children': [], 'value': '0'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 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[], 'value': 'range'},{'id': '121', 'type': 'argument_list', 'children': ['122', '123']},{'id': '122', 'type': 'integer', 'children': [], 'value': '0'},{'id': '123', 'type': 'call', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'beds1'},{'id': '127', 'type': 'block', 'children': ['128']},{'id': '128', 'type': 'expression_statement', 'children': ['129']},{'id': '129', 'type': 'assignment', 'children': ['130', '133']},{'id': '130', 'type': 'subscript', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '133', 'type': 'list', 'children': [], 'value': '[]'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'beds2min'},{'id': '137', 'type': 'integer', 'children': [], 'value': '0'},{'id': '138', 'type': 'expression_statement', 'children': ['139']},{'id': '139', 'type': 'assignment', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'beds2max'},{'id': '141', 'type': 'call', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '143', 'type': 'argument_list', 'children': ['144']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'beds2'},{'id': '145', 'type': 'for_statement', 'children': ['146', '147', '155']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '147', 'type': 'call', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '149', 'type': 'argument_list', 'children': ['150', '151']},{'id': '150', 'type': 'integer', 'children': [], 'value': '0'},{'id': '151', 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'children': [], 'value': 'cmpval'},{'id': '167', 'type': 'call', 'children': ['168', '173']},{'id': '168', 'type': 'attribute', 'children': ['169', '172']},{'id': '169', 'type': 'subscript', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'beds1'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'cmp'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'subscript', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'beds2'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '177', 'type': 'if_statement', 'children': ['178', '182', '189', '203']},{'id': '178', 'type': 'comparison_operator', 'children': ['179', '180'], 'value': '=='},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'cmpval'},{'id': '180', 'type': 'unary_operator', 'children': ['181'], 'value': '-'},{'id': '181', 'type': 'integer', 'children': [], 'value': '1'},{'id': '182', 'type': 'block', 'children': ['183']},{'id': '183', 'type': 'expression_statement', 'children': ['184']},{'id': '184', 'type': 'assignment', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'beds2min'},{'id': '186', 'type': 'binary_operator', 'children': ['187', '188'], 'value': '+'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '188', 'type': 'integer', 'children': [], 'value': '1'},{'id': '189', 'type': 'elif_clause', 'children': ['190', '193']},{'id': '190', 'type': 'comparison_operator', 'children': ['191', '192'], 'value': '=='},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'cmpval'},{'id': '192', 'type': 'integer', 'children': [], 'value': '0'},{'id': '193', 'type': 'block', 'children': ['194']},{'id': '194', 'type': 'expression_statement', 'children': ['195']},{'id': '195', 'type': 'call', 'children': ['196', 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'children': ['227']},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'augmented_assignment', 'children': ['229', '230'], 'value': '+='},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'outputs'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'beds1'},{'id': '231', 'type': 'else_clause', 'children': ['232']},{'id': '232', 'type': 'block', 'children': ['233']},{'id': '233', 'type': 'expression_statement', 'children': ['234']},{'id': '234', 'type': 'augmented_assignment', 'children': ['235', '236'], 'value': '+='},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'outputs'},{'id': '236', 'type': 'call', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'subtract_range_array'},{'id': '238', 'type': 'argument_list', 'children': ['239', '242', '251']},{'id': '239', 'type': 'subscript', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'beds1'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '242', 'type': 'list_comprehension', 'children': ['243', '246']},{'id': '243', 'type': 'subscript', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'beds2'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '246', 'type': 'for_in_clause', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '248', 'type': 'subscript', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'is_sorted'},{'id': '253', 'type': 'True', 'children': []},{'id': '254', 'type': 'return_statement', 'children': ['255']},{'id': '255', 'type': 'call', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'merge_ranges'},{'id': '257', 'type': 'argument_list', 'children': ['258']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'outputs'} | def subtract_ranges(r1s,r2s,already_sorted=False):
from seqtools.stream import MultiLocusStream
if not already_sorted:
r1s = merge_ranges(r1s)
r2s = merge_ranges(r2s)
outputs = []
mls = MultiLocusStream([BedArrayStream(r1s),BedArrayStream(r2s)])
tot1 = 0
tot2 = 0
for loc in mls:
v = loc.payload
[beds1,beds2] =v
beds1 = beds1[:]
beds2 = beds2[:]
if len(beds1)==0:
continue
if len(beds2)==0:
outputs += beds1
continue
mapping = {}
for i in range(0,len(beds1)):
mapping[i] = []
beds2min = 0
beds2max = len(beds2)
for i in range(0,len(beds1)):
for j in range(beds2min,beds2max):
cmpval = beds1[i].cmp(beds2[j])
if cmpval == -1:
beds2min = j+1
elif cmpval == 0:
mapping[i].append(j)
else:
break
for i in range(0,len(beds1)):
if len(mapping[i])==0: outputs += beds1
else:
outputs += subtract_range_array(beds1[i],[beds2[j] for j in mapping[i]],is_sorted=True)
return merge_ranges(outputs) |
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'value': 'beds2'},{'id': '31', 'type': 'block', 'children': ['32', '41']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'assignment', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'cval'},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'bed2'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'cmp'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'bed1'},{'id': '41', 'type': 'if_statement', 'children': ['42', '46', '48', '99']},{'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': '=='},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'cval'},{'id': '44', 'type': 'unary_operator', 'children': ['45'], 'value': '-'},{'id': '45', 'type': 'integer', 'children': [], 'value': '1'},{'id': '46', 'type': 'block', 'children': ['47']},{'id': '47', 'type': 'continue_statement', 'children': []},{'id': '48', 'type': 'elif_clause', 'children': ['49', '52']},{'id': '49', 'type': 'comparison_operator', 'children': ['50', '51'], 'value': '=='},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'cval'},{'id': '51', 'type': 'integer', 'children': [], 'value': '0'},{'id': '52', 'type': 'block', 'children': ['53', '65', '82']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'bed1'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'intersect'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'bed2'},{'id': '65', 'type': 'if_statement', 'children': ['66', '69']},{'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': '=='},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '68', 'type': 'integer', 'children': [], 'value': '1'},{'id': '69', 'type': 'block', 'children': ['70']},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '78']},{'id': '72', 'type': 'attribute', 'children': ['73', '77']},{'id': '73', 'type': 'subscript', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '75', 'type': 'unary_operator', 'children': ['76'], 'value': '-'},{'id': '76', 'type': 'integer', 'children': [], 'value': '1'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'set_payload'},{'id': '78', 'type': 'argument_list', 'children': ['79']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'bed1'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '82', 'type': 'if_statement', 'children': ['83', '86']},{'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': '=='},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '85', 'type': 'integer', 'children': [], 'value': '2'},{'id': '86', 'type': 'block', 'children': ['87']},{'id': '87', 'type': 'expression_statement', 'children': ['88']},{'id': '88', 'type': 'call', 'children': ['89', '95']},{'id': '89', 'type': 'attribute', 'children': ['90', '94']},{'id': '90', 'type': 'subscript', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '92', 'type': 'unary_operator', 'children': ['93'], 'value': '-'},{'id': '93', 'type': 'integer', 'children': [], 'value': '1'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'set_payload'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'bed2'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '99', 'type': 'elif_clause', 'children': ['100', '103']},{'id': '100', 'type': 'comparison_operator', 'children': ['101', '102'], 'value': '=='},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'cval'},{'id': '102', 'type': 'integer', 'children': [], 'value': '1'},{'id': '103', 'type': 'block', 'children': ['104']},{'id': '104', 'type': 'break_statement', 'children': []},{'id': '105', 'type': 'if_statement', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'payload'},{'id': '107', 'type': 'block', 'children': ['108']},{'id': '108', 'type': 'return_statement', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'sort_ranges'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '113', 'type': 'return_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'merge_ranges'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'output'} | def intersect_range_array(bed1,beds2,payload=None,is_sorted=False):
if not is_sorted: beds2 = sort_ranges(beds2)
output = []
for bed2 in beds2:
cval = bed2.cmp(bed1)
if cval == -1: continue
elif cval == 0:
output.append(bed1.intersect(bed2))
if payload==1:
output[-1].set_payload(bed1.payload)
if payload==2:
output[-1].set_payload(bed2.payload)
elif cval == 1: break
if payload: return sort_ranges(output)
return merge_ranges(output) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_genomic_ranges'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'rngs'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '9', 'type': 'argument_list', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'rngs'},{'id': '11', 'type': 'keyword_argument', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '13', 'type': 'lambda', 'children': ['14', '16']},{'id': '14', 'type': 'lambda_parameters', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '16', 'type': 'tuple', 'children': ['17', '20', '23']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'chr'},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'end'} | def sort_genomic_ranges(rngs):
return sorted(rngs, key=lambda x: (x.chr, x.start, x.end)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'topological_sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'dependencies'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'start_nodes'},{'id': '6', 'type': 'block', 'children': ['7', '11', '22', '33', '51', '95', '117']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '10', 'type': 'list', 'children': [], 'value': '[]'},{'id': '11', 'type': 'function_definition', 'children': ['12', '13', '15']},{'id': '12', 'type': 'function_name', 'children': [], 'value': 'edges'},{'id': '13', 'type': 'parameters', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '15', 'type': 'block', 'children': ['16']},{'id': '16', 'type': 'return_statement', 'children': ['17']},{'id': '17', 'type': 'subscript', 'children': ['18', '21']},{'id': '18', 'type': 'subscript', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'dependencies'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '21', 'type': 'integer', 'children': [], 'value': '1'},{'id': '22', 'type': 'function_definition', 'children': ['23', '24', '26']},{'id': '23', 'type': 'function_name', 'children': [], 'value': 'in_degree'},{'id': '24', 'type': 'parameters', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'subscript', 'children': ['29', '32']},{'id': '29', 'type': 'subscript', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'dependencies'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '32', 'type': 'integer', 'children': [], 'value': '0'},{'id': '33', 'type': 'function_definition', 'children': ['34', '35', '37']},{'id': '34', 'type': 'function_name', 'children': [], 'value': 'remove_incoming'},{'id': '35', 'type': 'parameters', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '37', 'type': 'block', 'children': ['38']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '45']},{'id': '40', 'type': 'subscript', 'children': ['41', '44']},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'dependencies'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '44', 'type': 'integer', 'children': [], 'value': '0'},{'id': '45', 'type': 'binary_operator', 'children': ['46', '50'], 'value': '-'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'in_degree'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '50', 'type': 'integer', 'children': [], 'value': '1'},{'id': '51', 'type': 'while_statement', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'start_nodes'},{'id': '53', 'type': 'block', 'children': ['54', '62', '69']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'start_nodes'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '61', 'type': 'argument_list', 'children': []},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'retval'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '69', 'type': 'for_statement', 'children': ['70', '71', '75']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'edges'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '75', 'type': 'block', 'children': ['76', '81']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'remove_incoming'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '81', 'type': 'if_statement', 'children': ['82', '87']},{'id': '82', 'type': 'not_operator', 'children': ['83']},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'in_degree'},{'id': '85', 'type': 'argument_list', 'children': ['86']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'start_nodes'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '95', 'type': 'expression_statement', 'children': ['96']},{'id': '96', 'type': 'assignment', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'leftover_nodes'},{'id': '98', 'type': 'list_comprehension', 'children': ['99', '100', '110']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '100', 'type': 'for_in_clause', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '104', 'type': 'argument_list', 'children': ['105']},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'dependencies'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '109', 'type': 'argument_list', 'children': []},{'id': '110', 'type': 'if_clause', 'children': ['111']},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '116'], 'value': '>'},{'id': '112', 'type': 'call', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'in_degree'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '116', 'type': 'integer', 'children': [], 'value': '0'},{'id': '117', 'type': 'if_statement', 'children': ['118', '119', '125']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'leftover_nodes'},{'id': '119', 'type': 'block', 'children': ['120']},{'id': '120', 'type': 'raise_statement', 'children': ['121']},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'CyclicDependency'},{'id': '123', 'type': 'argument_list', 'children': ['124']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'leftover_nodes'},{'id': '125', 'type': 'else_clause', 'children': ['126']},{'id': '126', 'type': 'block', 'children': ['127']},{'id': '127', 'type': 'return_statement', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'retval'} | def topological_sort(dependencies, start_nodes):
retval = []
def edges(node): return dependencies[node][1]
def in_degree(node): return dependencies[node][0]
def remove_incoming(node): dependencies[node][0] = in_degree(node) - 1
while start_nodes:
node = start_nodes.pop()
retval.append(node)
for child in edges(node):
remove_incoming(child)
if not in_degree(child):
start_nodes.append(child)
leftover_nodes = [node for node in list(dependencies.keys())
if in_degree(node) > 0]
if leftover_nodes:
raise CyclicDependency(leftover_nodes)
else:
return retval |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_do_parse'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'force_types'},{'id': '8', 'type': 'block', 'children': ['9', '13', '19', '189']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '12', 'type': 'dictionary', 'children': []},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': '_check_lib_installed'},{'id': '16', 'type': 'argument_list', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '18', 'type': 'string', 'children': [], 'value': "'parse'"},{'id': '19', 'type': 'if_statement', 'children': ['20', '23', '44', '78', '112', '155', '172', '186']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': '=='},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '22', 'type': 'string', 'children': [], 'value': "'ini'"},{'id': '23', 'type': 'block', 'children': ['24', '36']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'configobj'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'ConfigObj'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'cfg'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '43', 'type': 'argument_list', 'children': []},{'id': '44', 'type': 'elif_clause', 'children': ['45', '48']},{'id': '45', 'type': 'comparison_operator', 'children': ['46', '47'], 'value': '=='},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '47', 'type': 'string', 'children': [], 'value': "'json'"},{'id': '48', 'type': 'block', 'children': ['49', '66']},{'id': '49', 'type': 'if_statement', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'PY3'},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'io'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'TextIOWrapper'},{'id': '61', 'type': 'argument_list', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '63', 'type': 'keyword_argument', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '73', 'type': 'argument_list', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '78', 'type': 'elif_clause', 'children': ['79', '82']},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '81'], 'value': '=='},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '81', 'type': 'string', 'children': [], 'value': "'json5'"},{'id': '82', 'type': 'block', 'children': ['83', '100']},{'id': '83', 'type': 'if_statement', 'children': ['84', '87']},{'id': '84', 'type': 'attribute', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'PY3'},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'io'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'TextIOWrapper'},{'id': '95', 'type': 'argument_list', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '97', 'type': 'keyword_argument', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'json5'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '107', 'type': 'argument_list', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '109', 'type': 'keyword_argument', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '112', 'type': 'elif_clause', 'children': ['113', '116']},{'id': '113', 'type': 'comparison_operator', 'children': ['114', '115'], 'value': '=='},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '115', 'type': 'string', 'children': [], 'value': "'toml'"},{'id': '116', 'type': 'block', 'children': ['117', '129', '146']},{'id': '117', 'type': 'if_statement', 'children': ['118', '123']},{'id': '118', 'type': 'not_operator', 'children': ['119']},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': '_is_utf8'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '123', 'type': 'block', 'children': ['124']},{'id': '124', 'type': 'raise_statement', 'children': ['125']},{'id': '125', 'type': 'call', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'AnyMarkupError'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'string', 'children': [], 'value': "'toml is always utf-8 encoded according to specification'"},{'id': '129', 'type': 'if_statement', 'children': ['130', '133']},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'six'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'PY3'},{'id': '133', 'type': 'block', 'children': ['134']},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '137', 'type': 'call', 'children': ['138', '141']},{'id': '138', 'type': 'attribute', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'io'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'TextIOWrapper'},{'id': '141', 'type': 'argument_list', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '143', 'type': 'keyword_argument', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'toml'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'load'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '155', 'type': 'elif_clause', 'children': ['156', '159']},{'id': '156', 'type': 'comparison_operator', 'children': ['157', '158'], 'value': '=='},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '158', 'type': 'string', 'children': [], 'value': "'xml'"},{'id': '159', 'type': 'block', 'children': ['160']},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'assignment', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '163', 'type': 'call', 'children': ['164', '167']},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'xmltodict'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'parse'},{'id': '167', 'type': 'argument_list', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '169', 'type': 'keyword_argument', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '172', 'type': 'elif_clause', 'children': ['173', '176']},{'id': '173', 'type': 'comparison_operator', 'children': ['174', '175'], 'value': '=='},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '175', 'type': 'string', 'children': [], 'value': "'yaml'"},{'id': '176', 'type': 'block', 'children': ['177']},{'id': '177', 'type': 'expression_statement', 'children': ['178']},{'id': '178', 'type': 'assignment', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '180', 'type': 'call', 'children': ['181', '184']},{'id': '181', 'type': 'attribute', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'yaml'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'safe_load'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'inp'},{'id': '186', 'type': 'else_clause', 'children': ['187']},{'id': '187', 'type': 'block', 'children': ['188']},{'id': '188', 'type': 'raise_statement', 'children': []},{'id': '189', 'type': 'return_statement', 'children': ['190']},{'id': '190', 'type': 'call', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': '_ensure_proper_types'},{'id': '192', 'type': 'argument_list', 'children': ['193', '194', '195']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'force_types'} | def _do_parse(inp, fmt, encoding, force_types):
res = {}
_check_lib_installed(fmt, 'parse')
if fmt == 'ini':
cfg = configobj.ConfigObj(inp, encoding=encoding)
res = cfg.dict()
elif fmt == 'json':
if six.PY3:
inp = io.TextIOWrapper(inp, encoding=encoding)
res = json.load(inp, encoding=encoding)
elif fmt == 'json5':
if six.PY3:
inp = io.TextIOWrapper(inp, encoding=encoding)
res = json5.load(inp, encoding=encoding)
elif fmt == 'toml':
if not _is_utf8(encoding):
raise AnyMarkupError('toml is always utf-8 encoded according to specification')
if six.PY3:
inp = io.TextIOWrapper(inp, encoding=encoding)
res = toml.load(inp)
elif fmt == 'xml':
res = xmltodict.parse(inp, encoding=encoding)
elif fmt == 'yaml':
res = yaml.safe_load(inp)
else:
raise
return _ensure_proper_types(res, encoding, force_types) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_do_serialize'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'struct'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '7', 'type': 'block', 'children': ['8', '12', '18', '180']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_check_lib_installed'},{'id': '15', 'type': 'argument_list', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '17', 'type': 'string', 'children': [], 'value': "'serialize'"},{'id': '18', 'type': 'if_statement', 'children': ['19', '22', '63', '101', '132', '157', '177']},{'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': '=='},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '21', 'type': 'string', 'children': [], 'value': "'ini'"},{'id': '22', 'type': 'block', 'children': ['23', '34', '50']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'configobj'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'ConfigObj'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '34', 'type': 'for_statement', 'children': ['35', '38', '43']},{'id': '35', 'type': 'pattern_list', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'struct'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '42', 'type': 'argument_list', 'children': []},{'id': '43', 'type': 'block', 'children': ['44']},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '49']},{'id': '46', 'type': 'subscript', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'string', 'children': [], 'value': "b'\\n'"},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'config'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'write'},{'id': '62', 'type': 'argument_list', 'children': []},{'id': '63', 'type': 'elif_clause', 'children': ['64', '69']},{'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'in'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '66', 'type': 'list', 'children': ['67', '68'], 'value': "['json', 'json5']"},{'id': '67', 'type': 'string', 'children': [], 'value': "'json'"},{'id': '68', 'type': 'string', 'children': [], 'value': "'json5'"},{'id': '69', 'type': 'block', 'children': ['70']},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'assignment', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '73', 'type': 'call', 'children': ['74', '99']},{'id': '74', 'type': 'attribute', 'children': ['75', '98']},{'id': '75', 'type': 'call', 'children': ['76', '85']},{'id': '76', 'type': 'attribute', 'children': ['77', '84']},{'id': '77', 'type': '()', 'children': ['78']},{'id': '78', 'type': 'conditional_expression', 'children': ['79', '80', '83'], 'value': 'if'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '80', 'type': 'comparison_operator', 'children': ['81', '82'], 'value': '=='},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '82', 'type': 'string', 'children': [], 'value': "'json'"},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'json5'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '85', 'type': 'argument_list', 'children': ['86', '87', '90', '95']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'struct'},{'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '89', 'type': 'integer', 'children': [], 'value': '2'},{'id': '90', 'type': 'keyword_argument', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'separators'},{'id': '92', 'type': 'tuple', 'children': ['93', '94']},{'id': '93', 'type': 'string', 'children': [], 'value': "','"},{'id': '94', 'type': 'string', 'children': [], 'value': "': '"},{'id': '95', 'type': 'keyword_argument', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'ensure_ascii'},{'id': '97', 'type': 'False', 'children': []},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '99', 'type': 'argument_list', 'children': ['100']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '101', 'type': 'elif_clause', 'children': ['102', '105']},{'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': '=='},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '104', 'type': 'string', 'children': [], 'value': "'toml'"},{'id': '105', 'type': 'block', 'children': ['106', '118']},{'id': '106', 'type': 'if_statement', 'children': ['107', '112']},{'id': '107', 'type': 'not_operator', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': '_is_utf8'},{'id': '110', 'type': 'argument_list', 'children': ['111']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'raise_statement', 'children': ['114']},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'AnyMarkupError'},{'id': '116', 'type': 'argument_list', 'children': ['117']},{'id': '117', 'type': 'string', 'children': [], 'value': "'toml must always be utf-8 encoded according to specification'"},{'id': '118', 'type': 'expression_statement', 'children': ['119']},{'id': '119', 'type': 'assignment', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '121', 'type': 'call', 'children': ['122', '130']},{'id': '122', 'type': 'attribute', 'children': ['123', '129']},{'id': '123', 'type': 'call', 'children': ['124', '127']},{'id': '124', 'type': 'attribute', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'toml'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'dumps'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'struct'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '132', 'type': 'elif_clause', 'children': ['133', '136']},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': '=='},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '135', 'type': 'string', 'children': [], 'value': "'xml'"},{'id': '136', 'type': 'block', 'children': ['137']},{'id': '137', 'type': 'expression_statement', 'children': ['138']},{'id': '138', 'type': 'assignment', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '140', 'type': 'call', 'children': ['141', '155']},{'id': '141', 'type': 'attribute', 'children': ['142', '154']},{'id': '142', 'type': 'call', 'children': ['143', '146']},{'id': '143', 'type': 'attribute', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'xmltodict'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'unparse'},{'id': '146', 'type': 'argument_list', 'children': ['147', '148', '151']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'struct'},{'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'pretty'},{'id': '150', 'type': 'True', 'children': []},{'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '153', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'encode'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '157', 'type': 'elif_clause', 'children': ['158', '161']},{'id': '158', 'type': 'comparison_operator', 'children': ['159', '160'], 'value': '=='},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'fmt'},{'id': '160', 'type': 'string', 'children': [], 'value': "'yaml'"},{'id': '161', 'type': 'block', 'children': ['162']},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'assignment', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '165', 'type': 'call', 'children': ['166', '169']},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'yaml'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'safe_dump'},{'id': '169', 'type': 'argument_list', 'children': ['170', '171', '174']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'struct'},{'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'encoding'},{'id': '173', 'type': 'string', 'children': [], 'value': "'utf-8'"},{'id': '174', 'type': 'keyword_argument', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'default_flow_style'},{'id': '176', 'type': 'False', 'children': []},{'id': '177', 'type': 'else_clause', 'children': ['178']},{'id': '178', 'type': 'block', 'children': ['179']},{'id': '179', 'type': 'raise_statement', 'children': []},{'id': '180', 'type': 'return_statement', 'children': ['181']},{'id': '181', 'type': 'identifier', 'children': [], 'value': 'res'} | def _do_serialize(struct, fmt, encoding):
res = None
_check_lib_installed(fmt, 'serialize')
if fmt == 'ini':
config = configobj.ConfigObj(encoding=encoding)
for k, v in struct.items():
config[k] = v
res = b'\n'.join(config.write())
elif fmt in ['json', 'json5']:
res = (json if fmt == 'json' else json5).dumps(struct,
indent=2,
separators=(',', ': '),
ensure_ascii=False).encode(encoding)
elif fmt == 'toml':
if not _is_utf8(encoding):
raise AnyMarkupError('toml must always be utf-8 encoded according to specification')
res = toml.dumps(struct).encode(encoding)
elif fmt == 'xml':
res = xmltodict.unparse(struct, pretty=True, encoding='utf-8').encode('utf-8')
elif fmt == 'yaml':
res = yaml.safe_dump(struct, encoding='utf-8', default_flow_style=False)
else:
raise
return res |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_header'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'header_text'},{'id': '5', 'type': 'block', 'children': ['6', '19', '23', '56', '60', '64', '126']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '9', 'type': 'call', 'children': ['10', '17']},{'id': '10', 'type': 'attribute', 'children': ['11', '16']},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'header_text'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'rstrip'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '17', 'type': 'argument_list', 'children': ['18']},{'id': '18', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'rlens'},{'id': '22', 'type': 'dictionary', 'children': []},{'id': '23', 'type': 'for_statement', 'children': ['24', '25', '26']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '26', 'type': 'block', 'children': ['27', '37']},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '30', 'type': 'call', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '34', 'type': 'argument_list', 'children': ['35', '36']},{'id': '35', 'type': 'string', 'children': [], 'value': "'@SQ\\tSN:(\\S+)\\tLN:(\\S+)'"},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '37', 'type': 'if_statement', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '50']},{'id': '42', 'type': 'subscript', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'rlens'},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'integer', 'children': [], 'value': '1'},{'id': '50', 'type': 'call', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'integer', 'children': [], 'value': '2'},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '59', 'type': 'string', 'children': [], 'value': "''"},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'done_lens'},{'id': '63', 'type': 'False', 'children': []},{'id': '64', 'type': 'for_statement', 'children': ['65', '66', '67']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'if_statement', 'children': ['69', '76', '113']},{'id': '69', 'type': 'call', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '73', 'type': 'argument_list', 'children': ['74', '75']},{'id': '74', 'type': 'string', 'children': [], 'value': "'@SQ\\tSN:'"},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'if_statement', 'children': ['78', '80']},{'id': '78', 'type': 'not_operator', 'children': ['79']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'done_lens'},{'id': '80', 'type': 'block', 'children': ['81', '85']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'done_lens'},{'id': '84', 'type': 'True', 'children': []},{'id': '85', 'type': 'for_statement', 'children': ['86', '87', '95']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'chr'},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'call', 'children': ['91', '94']},{'id': '91', 'type': 'attribute', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'rlens'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '94', 'type': 'argument_list', 'children': []},{'id': '95', 'type': 'block', 'children': ['96']},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'augmented_assignment', 'children': ['98', '99'], 'value': '+='},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '99', 'type': 'binary_operator', 'children': ['100', '112'], 'value': '+'},{'id': '100', 'type': 'binary_operator', 'children': ['101', '106'], 'value': '+'},{'id': '101', 'type': 'binary_operator', 'children': ['102', '105'], 'value': '+'},{'id': '102', 'type': 'binary_operator', 'children': ['103', '104'], 'value': '+'},{'id': '103', 'type': 'string', 'children': [], 'value': '"@SQ\\tSN:"'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'chr'},{'id': '105', 'type': 'string', 'children': [], 'value': '"\\tLN:"'},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'subscript', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'rlens'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'chr'},{'id': '112', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '113', 'type': 'else_clause', 'children': ['114']},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'augmented_assignment', 'children': ['117', '118'], 'value': '+='},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'output'},{'id': '118', 'type': 'binary_operator', 'children': ['119', '125'], 'value': '+'},{'id': '119', 'type': 'call', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'ln'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'rstrip'},{'id': '123', 'type': 'argument_list', 'children': ['124']},{'id': '124', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '125', 'type': 'string', 'children': [], 'value': '"\\n"'},{'id': '126', 'type': 'return_statement', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'output'} | def sort_header(header_text):
lines = header_text.rstrip().split("\n")
rlens = {}
for ln in lines:
m = re.match('@SQ\tSN:(\S+)\tLN:(\S+)',ln)
if m:
rlens[m.group(1)] = m.group(2)
output = ''
done_lens = False
for ln in lines:
if re.match('@SQ\tSN:',ln):
if not done_lens:
done_lens = True
for chr in sorted(rlens.keys()):
output += "@SQ\tSN:"+chr+"\tLN:"+str(rlens[chr])+"\n"
else:
output += ln.rstrip("\n")+"\n"
return output |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '8', 'type': 'string', 'children': [], 'value': '"asc"'},{'id': '9', 'type': 'block', 'children': ['10', '23', '35']},{'id': '10', 'type': 'if_statement', 'children': ['11', '17']},{'id': '11', 'type': 'not_operator', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '14', 'type': 'argument_list', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'raise_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'string', 'children': [], 'value': '"Field should be a string"'},{'id': '23', 'type': 'if_statement', 'children': ['24', '29']},{'id': '24', 'type': 'comparison_operator', 'children': ['25', '26'], 'value': 'not'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '26', 'type': 'list', 'children': ['27', '28'], 'value': '["asc", "desc"]'},{'id': '27', 'type': 'string', 'children': [], 'value': '"asc"'},{'id': '28', 'type': 'string', 'children': [], 'value': '"desc"'},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'raise_statement', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'string', 'children': [], 'value': '"Sort direction should be `asc` or `desc`"'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '42']},{'id': '37', 'type': 'attribute', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'sorts'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'dictionary', 'children': ['44']},{'id': '44', 'type': 'pair', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'direction'} | def sort(self, field, direction="asc"):
if not isinstance(field, basestring):
raise ValueError("Field should be a string")
if direction not in ["asc", "desc"]:
raise ValueError("Sort direction should be `asc` or `desc`")
self.sorts.append({field: direction}) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '6', 'type': 'block', 'children': ['7']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorts'},{'id': '12', 'type': 'list_comprehension', 'children': ['13', '19', '26']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '19', 'type': 'for_in_clause', 'children': ['20', '23']},{'id': '20', 'type': 'pattern_list', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'sorts'},{'id': '26', 'type': 'if_clause', 'children': ['27']},{'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': 'is'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'field_name'} | def remove_sort(self, field_name):
self.sorts = [dict(field=value) for field, value in self.sorts if field
is not field_name] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'aggregate_registry_timers'},{'id': '3', 'type': 'parameters', 'children': []},{'id': '4', 'type': 'block', 'children': ['5', '8', '27', '31', '100', '106']},{'id': '5', 'type': 'import_statement', 'children': ['6']},{'id': '6', 'type': 'dotted_name', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'timers'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '13', 'type': 'argument_list', 'children': ['14', '19']},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'shared_registry'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '21', 'type': 'lambda', 'children': ['22', '24']},{'id': '22', 'type': 'lambda_parameters', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'aggregate_timers'},{'id': '30', 'type': 'list', 'children': [], 'value': '[]'},{'id': '31', 'type': 'for_statement', 'children': ['32', '35', '49']},{'id': '32', 'type': 'pattern_list', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'groupby'},{'id': '39', 'type': 'argument_list', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'timers'},{'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '43', 'type': 'lambda', 'children': ['44', '46']},{'id': '44', 'type': 'lambda_parameters', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'desc'},{'id': '49', 'type': 'block', 'children': ['50', '57', '64', '76', '88']},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'g'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'num_calls'},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'total_elapsed_ms'},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '69', 'type': 'generator_expression', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'elapsed_time_ms'},{'id': '73', 'type': 'for_in_clause', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'first_start_time'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '81', 'type': 'generator_expression', 'children': ['82', '85']},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'start_time'},{'id': '85', 'type': 'for_in_clause', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'aggregate_timers'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'tuple', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'first_start_time'},{'id': '96', 'type': 'tuple', 'children': ['97', '98', '99']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'total_elapsed_ms'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'num_calls'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'call', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'aggregate_timers'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '105', 'type': 'argument_list', 'children': []},{'id': '106', 'type': 'return_statement', 'children': ['107']},{'id': '107', 'type': 'subscript', 'children': ['108', '113']},{'id': '108', 'type': 'call', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '110', 'type': 'argument_list', 'children': ['111']},{'id': '111', 'type': 'list_splat', 'children': ['112']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'aggregate_timers'},{'id': '113', 'type': 'integer', 'children': [], 'value': '1'} | def aggregate_registry_timers():
import itertools
timers = sorted(shared_registry.values(), key=lambda t: t.desc)
aggregate_timers = []
for k, g in itertools.groupby(timers, key=lambda t: t.desc):
group = list(g)
num_calls = len(group)
total_elapsed_ms = sum(t.elapsed_time_ms for t in group)
first_start_time = min(t.start_time for t in group)
aggregate_timers.append(
(first_start_time, (k, total_elapsed_ms, num_calls)))
aggregate_timers.sort()
return zip(*aggregate_timers)[1] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'spread'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '5', 'type': 'block', 'children': ['6', '16', '24', '30', '60']},{'id': '6', 'type': 'if_statement', 'children': ['7', '13']},{'id': '7', 'type': 'comparison_operator', 'children': ['8', '12'], 'value': '=='},{'id': '8', 'type': 'call', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '10', 'type': 'argument_list', 'children': ['11']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '12', 'type': 'integer', 'children': [], 'value': '1'},{'id': '13', 'type': 'block', 'children': ['14']},{'id': '14', 'type': 'return_statement', 'children': ['15']},{'id': '15', 'type': 'integer', 'children': [], 'value': '0'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '29', 'type': 'argument_list', 'children': []},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'max_diff'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '35', 'type': 'generator_expression', 'children': ['36', '42']},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'binary_operator', 'children': ['40', '41'], 'value': '-'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '42', 'type': 'for_in_clause', 'children': ['43', '46']},{'id': '43', 'type': 'tuple_pattern', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '48', 'type': 'argument_list', 'children': ['49', '54']},{'id': '49', 'type': 'subscript', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '51', 'type': 'slice', 'children': ['52', '53']},{'id': '52', 'type': 'integer', 'children': [], 'value': '1'},{'id': '53', 'type': 'colon', 'children': []},{'id': '54', 'type': 'subscript', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '56', 'type': 'slice', 'children': ['57', '58']},{'id': '57', 'type': 'colon', 'children': []},{'id': '58', 'type': 'unary_operator', 'children': ['59'], 'value': '-'},{'id': '59', 'type': 'integer', 'children': [], 'value': '1'},{'id': '60', 'type': 'return_statement', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'max_diff'} | def spread(iterable):
if len(iterable) == 1:
return 0
iterable = iterable.copy()
iterable.sort()
max_diff = max(abs(i - j) for (i, j) in zip(iterable[1:], iterable[:-1]))
return max_diff |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_transcripts'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '36']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'txs'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '11', 'type': 'argument_list', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'transcripts'},{'id': '15', 'type': 'keyword_argument', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '17', 'type': 'lambda', 'children': ['18', '20']},{'id': '18', 'type': 'lambda_parameters', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '20', 'type': 'tuple', 'children': ['21', '26', '31']},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'chr'},{'id': '26', 'type': 'attribute', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '31', 'type': 'attribute', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': '_transcripts'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'txs'} | def sort_transcripts(self):
txs = sorted(self.transcripts,key=lambda x: (x.range.chr, x.range.start, x.range.end))
self._transcripts = txs |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'in1d_events'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'ar1'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'ar2'},{'id': '6', 'type': 'block', 'children': ['7', '16', '25', '39']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'ar1'},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'ascontiguousarray'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'ar1'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'ar2'},{'id': '19', 'type': 'call', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'ascontiguousarray'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'ar2'},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'tmp'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'empty_like'},{'id': '32', 'type': 'argument_list', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'ar1'},{'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'uint8'},{'id': '39', 'type': 'return_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'analysis_functions'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'get_in1d_sorted'},{'id': '44', 'type': 'argument_list', 'children': ['45', '46', '47']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'ar1'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'ar2'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'tmp'} | def in1d_events(ar1, ar2):
ar1 = np.ascontiguousarray(ar1)
ar2 = np.ascontiguousarray(ar2)
tmp = np.empty_like(ar1, dtype=np.uint8)
return analysis_functions.get_in1d_sorted(ar1, ar2, tmp) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by_priority'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '7', 'type': 'False', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'default_priority'},{'id': '10', 'type': 'integer', 'children': [], 'value': '10'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'return_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '15', 'type': 'argument_list', 'children': ['16', '17', '20']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'iterable'},{'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '20', 'type': 'keyword_argument', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '22', 'type': 'lambda', 'children': ['23', '25']},{'id': '23', 'type': 'lambda_parameters', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '27', 'type': 'argument_list', 'children': ['28', '29', '30']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '29', 'type': 'string', 'children': [], 'value': "'priority'"},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'default_priority'} | def sort_by_priority(iterable, reverse=False, default_priority=10):
return sorted(iterable, reverse=reverse, key=lambda o: getattr(o, 'priority', default_priority)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'apply'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'new_dtype'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'dictionary_splat_pattern', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'if_statement', 'children': ['16', '20', '47', '119']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'callable'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '20', 'type': 'block', 'children': ['21']},{'id': '21', 'type': 'return_statement', 'children': ['22']},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'Series'},{'id': '24', 'type': 'argument_list', 'children': ['25', '38', '41', '44']},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '27', 'type': 'argument_list', 'children': ['28', '31', '36']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'weld_type'},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'weld_type'},{'id': '36', 'type': 'dictionary_splat', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '47', 'type': 'elif_clause', 'children': ['48', '53']},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '53', 'type': 'block', 'children': ['54', '60', '65', '74', '92', '103']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'call', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'check_type'},{'id': '57', 'type': 'argument_list', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'check_dtype'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'new_dtype'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'default_mapping'},{'id': '68', 'type': 'dictionary', 'children': ['69']},{'id': '69', 'type': 'pair', 'children': ['70', '71']},{'id': '70', 'type': 'string', 'children': [], 'value': "'self'"},{'id': '71', 'type': 'attribute', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '74', 'type': 'if_statement', 'children': ['75', '78', '83']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '77'], 'value': 'is'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '77', 'type': 'None', 'children': []},{'id': '78', 'type': 'block', 'children': ['79']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'default_mapping'},{'id': '83', 'type': 'else_clause', 'children': ['84']},{'id': '84', 'type': 'block', 'children': ['85']},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'default_mapping'},{'id': '92', 'type': 'if_statement', 'children': ['93', '96']},{'id': '93', 'type': 'comparison_operator', 'children': ['94', '95'], 'value': 'is'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'new_dtype'},{'id': '95', 'type': 'None', 'children': []},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'new_dtype'},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'dtype'},{'id': '103', 'type': 'return_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'Series'},{'id': '106', 'type': 'argument_list', 'children': ['107', '112', '115', '116']},{'id': '107', 'type': 'call', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'weld_udf'},{'id': '109', 'type': 'argument_list', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'mapping'},{'id': '112', 'type': 'attribute', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'new_dtype'},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '119', 'type': 'else_clause', 'children': ['120']},{'id': '120', 'type': 'block', 'children': ['121']},{'id': '121', 'type': 'raise_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'TypeError'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'string', 'children': [], 'value': "'Expected function or str defining a weld_template'"} | def apply(self, func, mapping=None, new_dtype=None, **kwargs):
if callable(func):
return Series(func(self.values,
weld_type=self.weld_type,
**kwargs),
self.index,
self.dtype,
self.name)
elif isinstance(func, str):
check_type(mapping, dict)
check_dtype(new_dtype)
default_mapping = {'self': self.values}
if mapping is None:
mapping = default_mapping
else:
mapping.update(default_mapping)
if new_dtype is None:
new_dtype = self.dtype
return Series(weld_udf(func,
mapping),
self.index,
new_dtype,
self.name)
else:
raise TypeError('Expected function or str defining a weld_template') |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'weld_sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'weld_types'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'readable_text'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '9', 'type': 'True', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '20', '28', '36', '46', '56', '68', '77', '88', '96']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'weld_obj_sort'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': '_weld_sort'},{'id': '16', 'type': 'argument_list', 'children': ['17', '18', '19']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'arrays'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'weld_types'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'weld_obj_struct'},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'weld_vec_of_struct_to_struct_of_vec'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'weld_obj_sort'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'weld_types'},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'weld_obj_indices'},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'weld_select_from_struct'},{'id': '33', 'type': 'argument_list', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'weld_obj_struct'},{'id': '35', 'type': 'integer', 'children': [], 'value': '0'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'intermediate_result'},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'LazyArrayResult'},{'id': '41', 'type': 'argument_list', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'weld_obj_indices'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'WeldLong'},{'id': '45', 'type': 'argument_list', 'children': []},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'dependency_name'},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'Cache'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'cache_intermediate_result'},{'id': '53', 'type': 'argument_list', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'intermediate_result'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'readable_text'},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'fake_weld_input'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'Cache'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'create_fake_array_input'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'dependency_name'},{'id': '65', 'type': 'binary_operator', 'children': ['66', '67'], 'value': '+'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'readable_text'},{'id': '67', 'type': 'string', 'children': [], 'value': "'_indices'"},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '73']},{'id': '70', 'type': 'pattern_list', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'obj_id'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'weld_obj'},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'create_weld_object'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'fake_weld_input'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'weld_obj'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'weld_code'},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'string', 'children': [], 'value': "'{}'"},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'obj_id'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'Cache'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'cache_fake_input'},{'id': '93', 'type': 'argument_list', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'obj_id'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'fake_weld_input'},{'id': '96', 'type': 'return_statement', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'weld_obj'} | def weld_sort(arrays, weld_types, readable_text, ascending=True):
weld_obj_sort = _weld_sort(arrays, weld_types, ascending)
weld_obj_struct = weld_vec_of_struct_to_struct_of_vec(weld_obj_sort, weld_types)
weld_obj_indices = weld_select_from_struct(weld_obj_struct, 0)
intermediate_result = LazyArrayResult(weld_obj_indices, WeldLong())
dependency_name = Cache.cache_intermediate_result(intermediate_result, readable_text)
fake_weld_input = Cache.create_fake_array_input(dependency_name, readable_text + '_indices')
obj_id, weld_obj = create_weld_object(fake_weld_input)
weld_obj.weld_code = '{}'.format(obj_id)
Cache.cache_fake_input(obj_id, fake_weld_input)
return weld_obj |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'chooseBestDuplicates'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'tped'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'oldSamples'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'completion'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'concordance_all'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '10', 'type': 'block', 'children': ['11', '15', '43', '56', '60', '88', '101', '105', '109', '435', '441', '447']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'chosenFile'},{'id': '14', 'type': 'None', 'children': []},{'id': '15', 'type': 'try_statement', 'children': ['16', '27']},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'chosenFile'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '22', 'type': 'argument_list', 'children': ['23', '26']},{'id': '23', 'type': 'binary_operator', 'children': ['24', '25'], 'value': '+'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '25', 'type': 'string', 'children': [], 'value': '".chosen_samples.info"'},{'id': '26', 'type': 'string', 'children': [], 'value': '"w"'},{'id': '27', 'type': 'except_clause', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '29', 'type': 'block', 'children': ['30', '38']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '33', 'type': 'binary_operator', 'children': ['34', '35'], 'value': '%'},{'id': '34', 'type': 'string', 'children': [], 'value': '"%(prefix)s.chosen_samples.info: can\'t write file"'},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'locals'},{'id': '37', 'type': 'argument_list', 'children': []},{'id': '38', 'type': 'raise_statement', 'children': ['39']},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'ProgramError'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '43', 'type': 'print_statement', 'children': ['44', '46']},{'id': '44', 'type': 'chevron', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'chosenFile'},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'string', 'children': [], 'value': '"\\t"'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'list', 'children': ['52', '53', '54', '55'], 'value': '["origIndex", "dupIndex", "famID", "indID"]'},{'id': '52', 'type': 'string', 'children': [], 'value': '"origIndex"'},{'id': '53', 'type': 'string', 'children': [], 'value': '"dupIndex"'},{'id': '54', 'type': 'string', 'children': [], 'value': '"famID"'},{'id': '55', 'type': 'string', 'children': [], 'value': '"indID"'},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'excludedFile'},{'id': '59', 'type': 'None', 'children': []},{'id': '60', 'type': 'try_statement', 'children': ['61', '72']},{'id': '61', 'type': 'block', 'children': ['62']},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'assignment', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'excludedFile'},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '67', 'type': 'argument_list', 'children': ['68', '71']},{'id': '68', 'type': 'binary_operator', 'children': ['69', '70'], 'value': '+'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '70', 'type': 'string', 'children': [], 'value': '".excluded_samples.info"'},{'id': '71', 'type': 'string', 'children': [], 'value': '"w"'},{'id': '72', 'type': 'except_clause', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'IOError'},{'id': '74', 'type': 'block', 'children': ['75', '83']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '78', 'type': 'binary_operator', 'children': ['79', '80'], 'value': '%'},{'id': '79', 'type': 'string', 'children': [], 'value': '"%(prefix)s.excluded_samples.info: can\'t write file"'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'locals'},{'id': '82', 'type': 'argument_list', 'children': []},{'id': '83', 'type': 'raise_statement', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'ProgramError'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '88', 'type': 'print_statement', 'children': ['89', '91']},{'id': '89', 'type': 'chevron', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'excludedFile'},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'string', 'children': [], 'value': '"\\t"'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'list', 'children': ['97', '98', '99', '100'], 'value': '["origIndex", "dupIndex", "famID",\n "indID"]'},{'id': '97', 'type': 'string', 'children': [], 'value': '"origIndex"'},{'id': '98', 'type': 'string', 'children': [], 'value': '"dupIndex"'},{'id': '99', 'type': 'string', 'children': [], 'value': '"famID"'},{'id': '100', 'type': 'string', 'children': [], 'value': '"indID"'},{'id': '101', 'type': 'expression_statement', 'children': ['102']},{'id': '102', 'type': 'assignment', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'chosenIndexes'},{'id': '104', 'type': 'dictionary', 'children': []},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'assignment', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'sampleConcordance'},{'id': '108', 'type': 'dictionary', 'children': []},{'id': '109', 'type': 'for_statement', 'children': ['110', '113', '118']},{'id': '110', 'type': 'pattern_list', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'samples'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'iteritems'},{'id': '117', 'type': 'argument_list', 'children': []},{'id': '118', 'type': 'block', 'children': ['119', '125', '134', '140', '154', '200', '209', '220', '229', '233', '237', '330', '349', '382', '427']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'currCompletion'},{'id': '122', 'type': 'subscript', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'completion'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'sortedCompletionIndexes'},{'id': '128', 'type': 'call', 'children': ['129', '132']},{'id': '129', 'type': 'attribute', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '132', 'type': 'argument_list', 'children': ['133']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'currCompletion'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'concordance'},{'id': '137', 'type': 'subscript', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'concordance_all'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '143', 'type': 'list_comprehension', 'children': ['144', '145']},{'id': '144', 'type': 'list', 'children': [], 'value': '[]'},{'id': '145', 'type': 'for_in_clause', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '147', 'type': 'call', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'xrange'},{'id': '149', 'type': 'argument_list', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '154', 'type': 'for_statement', 'children': ['155', '156', '163']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '156', 'type': 'call', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'xrange'},{'id': '158', 'type': 'argument_list', 'children': ['159']},{'id': '159', 'type': 'call', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '163', 'type': 'block', 'children': ['164', '186']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'indexToKeep'},{'id': '167', 'type': 'call', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '169', 'type': 'argument_list', 'children': ['170']},{'id': '170', 'type': 'binary_operator', 'children': ['171', '181'], 'value': '-'},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'call', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'call', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '179', 'type': 'argument_list', 'children': ['180']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '181', 'type': 'call', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '183', 'type': 'argument_list', 'children': ['184']},{'id': '184', 'type': 'list', 'children': ['185'], 'value': '[i]'},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'assignment', 'children': ['188', '191']},{'id': '188', 'type': 'subscript', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '191', 'type': 'call', 'children': ['192', '195']},{'id': '192', 'type': 'attribute', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'mean'},{'id': '195', 'type': 'argument_list', 'children': ['196']},{'id': '196', 'type': 'subscript', 'children': ['197', '198', '199']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'concordance'},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'indexToKeep'},{'id': '200', 'type': 'expression_statement', 'children': ['201']},{'id': '201', 'type': 'assignment', 'children': ['202', '203']},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '203', 'type': 'call', 'children': ['204', '207']},{'id': '204', 'type': 'attribute', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '207', 'type': 'argument_list', 'children': ['208']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '209', 'type': 'if_statement', 'children': ['210', '213']},{'id': '210', 'type': 'comparison_operator', 'children': ['211', '212'], 'value': 'not'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'sampleConcordance'},{'id': '213', 'type': 'block', 'children': ['214']},{'id': '214', 'type': 'expression_statement', 'children': ['215']},{'id': '215', 'type': 'assignment', 'children': ['216', '219']},{'id': '216', 'type': 'subscript', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'sampleConcordance'},{'id': '218', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '220', 'type': 'expression_statement', 'children': ['221']},{'id': '221', 'type': 'assignment', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'sortedConcordanceIndexes'},{'id': '223', 'type': 'call', 'children': ['224', '227']},{'id': '224', 'type': 'attribute', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '227', 'type': 'argument_list', 'children': ['228']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'assignment', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'nbToCheck'},{'id': '232', 'type': 'integer', 'children': [], 'value': '1'},{'id': '233', 'type': 'expression_statement', 'children': ['234']},{'id': '234', 'type': 'assignment', 'children': ['235', '236']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '236', 'type': 'None', 'children': []},{'id': '237', 'type': 'while_statement', 'children': ['238', '244']},{'id': '238', 'type': 'comparison_operator', 'children': ['239', '240'], 'value': '<='},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'nbToCheck'},{'id': '240', 'type': 'call', 'children': ['241', '242']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '242', 'type': 'argument_list', 'children': ['243']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '244', 'type': 'block', 'children': ['245', '256', '267', '283', '299', '305', '326']},{'id': '245', 'type': 'expression_statement', 'children': ['246']},{'id': '246', 'type': 'assignment', 'children': ['247', '248']},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'completionValue'},{'id': '248', 'type': 'subscript', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'currCompletion'},{'id': '250', 'type': 'subscript', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'sortedCompletionIndexes'},{'id': '252', 'type': 'binary_operator', 'children': ['253', '254'], 'value': '*'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'nbToCheck'},{'id': '254', 'type': 'unary_operator', 'children': ['255'], 'value': '-'},{'id': '255', 'type': 'integer', 'children': [], 'value': '1'},{'id': '256', 'type': 'expression_statement', 'children': ['257']},{'id': '257', 'type': 'assignment', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'concordanceValue'},{'id': '259', 'type': 'subscript', 'children': ['260', '261']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '261', 'type': 'subscript', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'sortedConcordanceIndexes'},{'id': '263', 'type': 'binary_operator', 'children': ['264', '265'], 'value': '*'},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'nbToCheck'},{'id': '265', 'type': 'unary_operator', 'children': ['266'], 'value': '-'},{'id': '266', 'type': 'integer', 'children': [], 'value': '1'},{'id': '267', 'type': 'expression_statement', 'children': ['268']},{'id': '268', 'type': 'assignment', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'completionToConsider'},{'id': '270', 'type': 'call', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '272', 'type': 'argument_list', 'children': ['273']},{'id': '273', 'type': 'subscript', 'children': ['274', '282']},{'id': '274', 'type': 'call', 'children': ['275', '278']},{'id': '275', 'type': 'attribute', 'children': ['276', '277']},{'id': '276', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'where'},{'id': '278', 'type': 'argument_list', 'children': ['279']},{'id': '279', 'type': 'comparison_operator', 'children': ['280', '281'], 'value': '>='},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'currCompletion'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'completionValue'},{'id': '282', 'type': 'integer', 'children': [], 'value': '0'},{'id': '283', 'type': 'expression_statement', 'children': ['284']},{'id': '284', 'type': 'assignment', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'concordanceToConsider'},{'id': '286', 'type': 'call', 'children': ['287', '288']},{'id': '287', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '288', 'type': 'argument_list', 'children': ['289']},{'id': '289', 'type': 'subscript', 'children': ['290', '298']},{'id': '290', 'type': 'call', 'children': ['291', '294']},{'id': '291', 'type': 'attribute', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'where'},{'id': '294', 'type': 'argument_list', 'children': ['295']},{'id': '295', 'type': 'comparison_operator', 'children': ['296', '297'], 'value': '>='},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'currConcordance'},{'id': '297', 'type': 'identifier', 'children': [], 'value': 'concordanceValue'},{'id': '298', 'type': 'integer', 'children': [], 'value': '0'},{'id': '299', 'type': 'expression_statement', 'children': ['300']},{'id': '300', 'type': 'assignment', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'toConsider'},{'id': '302', 'type': 'binary_operator', 'children': ['303', '304'], 'value': '&'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'concordanceToConsider'},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'completionToConsider'},{'id': '305', 'type': 'if_statement', 'children': ['306', '312']},{'id': '306', 'type': 'comparison_operator', 'children': ['307', '311'], 'value': '>='},{'id': '307', 'type': 'call', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '309', 'type': 'argument_list', 'children': ['310']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'toConsider'},{'id': '311', 'type': 'integer', 'children': [], 'value': '1'},{'id': '312', 'type': 'block', 'children': ['313', '325']},{'id': '313', 'type': 'expression_statement', 'children': ['314']},{'id': '314', 'type': 'assignment', 'children': ['315', '316']},{'id': '315', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '316', 'type': 'call', 'children': ['317', '320']},{'id': '317', 'type': 'attribute', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'random'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'choice'},{'id': '320', 'type': 'argument_list', 'children': ['321']},{'id': '321', 'type': 'call', 'children': ['322', '323']},{'id': '322', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '323', 'type': 'argument_list', 'children': ['324']},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'toConsider'},{'id': '325', 'type': 'break_statement', 'children': []},{'id': '326', 'type': 'expression_statement', 'children': ['327']},{'id': '327', 'type': 'augmented_assignment', 'children': ['328', '329'], 'value': '+='},{'id': '328', 'type': 'identifier', 'children': [], 'value': 'nbToCheck'},{'id': '329', 'type': 'integer', 'children': [], 'value': '1'},{'id': '330', 'type': 'if_statement', 'children': ['331', '334']},{'id': '331', 'type': 'comparison_operator', 'children': ['332', '333'], 'value': 'is'},{'id': '332', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '333', 'type': 'None', 'children': []},{'id': '334', 'type': 'block', 'children': ['335', '344']},{'id': '335', 'type': 'expression_statement', 'children': ['336']},{'id': '336', 'type': 'assignment', 'children': ['337', '338']},{'id': '337', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '338', 'type': 'call', 'children': ['339', '342']},{'id': '339', 'type': 'attribute', 'children': ['340', '341']},{'id': '340', 'type': 'string', 'children': [], 'value': '"Could not choose the best sample ID for {}"'},{'id': '341', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '342', 'type': 'argument_list', 'children': ['343']},{'id': '343', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '344', 'type': 'raise_statement', 'children': ['345']},{'id': '345', 'type': 'call', 'children': ['346', '347']},{'id': '346', 'type': 'identifier', 'children': [], 'value': 'ProgramError'},{'id': '347', 'type': 'argument_list', 'children': ['348']},{'id': '348', 'type': 'identifier', 'children': [], 'value': 'msg'},{'id': '349', 'type': 'print_statement', 'children': ['350', '352']},{'id': '350', 'type': 'chevron', 'children': ['351']},{'id': '351', 'type': 'identifier', 'children': [], 'value': 'chosenFile'},{'id': '352', 'type': 'call', 'children': ['353', '356']},{'id': '353', 'type': 'attribute', 'children': ['354', '355']},{'id': '354', 'type': 'string', 'children': [], 'value': '"\\t"'},{'id': '355', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '356', 'type': 'argument_list', 'children': ['357']},{'id': '357', 'type': 'list', 'children': ['358', '368', '376', '379'], 'value': '[str(oldSamples[sample][chosenIndex]+1),\n str(indexes[chosenIndex]+1), sample[0],\n sample[1]]'},{'id': '358', 'type': 'call', 'children': ['359', '360']},{'id': '359', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '360', 'type': 'argument_list', 'children': ['361']},{'id': '361', 'type': 'binary_operator', 'children': ['362', '367'], 'value': '+'},{'id': '362', 'type': 'subscript', 'children': ['363', '366']},{'id': '363', 'type': 'subscript', 'children': ['364', '365']},{'id': '364', 'type': 'identifier', 'children': [], 'value': 'oldSamples'},{'id': '365', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '366', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '367', 'type': 'integer', 'children': [], 'value': '1'},{'id': '368', 'type': 'call', 'children': ['369', '370']},{'id': '369', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '370', 'type': 'argument_list', 'children': ['371']},{'id': '371', 'type': 'binary_operator', 'children': ['372', '375'], 'value': '+'},{'id': '372', 'type': 'subscript', 'children': ['373', '374']},{'id': '373', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '374', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '375', 'type': 'integer', 'children': [], 'value': '1'},{'id': '376', 'type': 'subscript', 'children': ['377', '378']},{'id': '377', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '378', 'type': 'integer', 'children': [], 'value': '0'},{'id': '379', 'type': 'subscript', 'children': ['380', '381']},{'id': '380', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '381', 'type': 'integer', 'children': [], 'value': '1'},{'id': '382', 'type': 'for_statement', 'children': ['383', '386', '390']},{'id': '383', 'type': 'pattern_list', 'children': ['384', '385']},{'id': '384', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '385', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '386', 'type': 'call', 'children': ['387', '388']},{'id': '387', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '388', 'type': 'argument_list', 'children': ['389']},{'id': '389', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '390', 'type': 'block', 'children': ['391']},{'id': '391', 'type': 'if_statement', 'children': ['392', '395']},{'id': '392', 'type': 'comparison_operator', 'children': ['393', '394'], 'value': '!='},{'id': '393', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '394', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '395', 'type': 'block', 'children': ['396']},{'id': '396', 'type': 'print_statement', 'children': ['397', '399']},{'id': '397', 'type': 'chevron', 'children': ['398']},{'id': '398', 'type': 'identifier', 'children': [], 'value': 'excludedFile'},{'id': '399', 'type': 'call', 'children': ['400', '403']},{'id': '400', 'type': 'attribute', 'children': ['401', '402']},{'id': '401', 'type': 'string', 'children': [], 'value': '"\\t"'},{'id': '402', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '403', 'type': 'argument_list', 'children': ['404']},{'id': '404', 'type': 'list', 'children': ['405', '415', '421', '424'], 'value': '[str(oldSamples[sample][i]+1),\n str(index+1), sample[0],\n sample[1]]'},{'id': '405', 'type': 'call', 'children': ['406', '407']},{'id': '406', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '407', 'type': 'argument_list', 'children': ['408']},{'id': '408', 'type': 'binary_operator', 'children': ['409', '414'], 'value': '+'},{'id': '409', 'type': 'subscript', 'children': ['410', '413']},{'id': '410', 'type': 'subscript', 'children': ['411', '412']},{'id': '411', 'type': 'identifier', 'children': [], 'value': 'oldSamples'},{'id': '412', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '413', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '414', 'type': 'integer', 'children': [], 'value': '1'},{'id': '415', 'type': 'call', 'children': ['416', '417']},{'id': '416', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '417', 'type': 'argument_list', 'children': ['418']},{'id': '418', 'type': 'binary_operator', 'children': ['419', '420'], 'value': '+'},{'id': '419', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '420', 'type': 'integer', 'children': [], 'value': '1'},{'id': '421', 'type': 'subscript', 'children': ['422', '423']},{'id': '422', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '423', 'type': 'integer', 'children': [], 'value': '0'},{'id': '424', 'type': 'subscript', 'children': ['425', '426']},{'id': '425', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '426', 'type': 'integer', 'children': [], 'value': '1'},{'id': '427', 'type': 'expression_statement', 'children': ['428']},{'id': '428', 'type': 'assignment', 'children': ['429', '432']},{'id': '429', 'type': 'subscript', 'children': ['430', '431']},{'id': '430', 'type': 'identifier', 'children': [], 'value': 'chosenIndexes'},{'id': '431', 'type': 'identifier', 'children': [], 'value': 'sample'},{'id': '432', 'type': 'subscript', 'children': ['433', '434']},{'id': '433', 'type': 'identifier', 'children': [], 'value': 'indexes'},{'id': '434', 'type': 'identifier', 'children': [], 'value': 'chosenIndex'},{'id': '435', 'type': 'expression_statement', 'children': ['436']},{'id': '436', 'type': 'call', 'children': ['437', '440']},{'id': '437', 'type': 'attribute', 'children': ['438', '439']},{'id': '438', 'type': 'identifier', 'children': [], 'value': 'chosenFile'},{'id': '439', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '440', 'type': 'argument_list', 'children': []},{'id': '441', 'type': 'expression_statement', 'children': ['442']},{'id': '442', 'type': 'call', 'children': ['443', '446']},{'id': '443', 'type': 'attribute', 'children': ['444', '445']},{'id': '444', 'type': 'identifier', 'children': [], 'value': 'excludedFile'},{'id': '445', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '446', 'type': 'argument_list', 'children': []},{'id': '447', 'type': 'return_statement', 'children': ['448']},{'id': '448', 'type': 'expression_list', 'children': ['449', '450', '451']},{'id': '449', 'type': 'identifier', 'children': [], 'value': 'chosenIndexes'},{'id': '450', 'type': 'identifier', 'children': [], 'value': 'completion'},{'id': '451', 'type': 'identifier', 'children': [], 'value': 'sampleConcordance'} | def chooseBestDuplicates(tped, samples, oldSamples, completion,
concordance_all, prefix):
chosenFile = None
try:
chosenFile = open(prefix + ".chosen_samples.info", "w")
except IOError:
msg = "%(prefix)s.chosen_samples.info: can't write file" % locals()
raise ProgramError(msg)
print >>chosenFile, "\t".join(["origIndex", "dupIndex", "famID", "indID"])
excludedFile = None
try:
excludedFile = open(prefix + ".excluded_samples.info", "w")
except IOError:
msg = "%(prefix)s.excluded_samples.info: can't write file" % locals()
raise ProgramError(msg)
print >>excludedFile, "\t".join(["origIndex", "dupIndex", "famID",
"indID"])
chosenIndexes = {}
sampleConcordance = {}
for sample, indexes in samples.iteritems():
currCompletion = completion[indexes]
sortedCompletionIndexes = np.argsort(currCompletion)
concordance = concordance_all[sample]
currConcordance = [[] for i in xrange(len(indexes))]
for i in xrange(len(indexes)):
indexToKeep = list(set(range(len(indexes))) - set([i]))
currConcordance[i] = np.mean(concordance[i, indexToKeep])
currConcordance = np.array(currConcordance)
if sample not in sampleConcordance:
sampleConcordance[sample] = currConcordance
sortedConcordanceIndexes = np.argsort(currConcordance)
nbToCheck = 1
chosenIndex = None
while nbToCheck <= len(indexes):
completionValue = currCompletion[
sortedCompletionIndexes[nbToCheck*-1]
]
concordanceValue = currConcordance[
sortedConcordanceIndexes[nbToCheck*-1]
]
completionToConsider = set(
np.where(currCompletion >= completionValue)[0]
)
concordanceToConsider = set(
np.where(currConcordance >= concordanceValue)[0])
toConsider = concordanceToConsider & completionToConsider
if len(toConsider) >= 1:
chosenIndex = random.choice(list(toConsider))
break
nbToCheck += 1
if chosenIndex is None:
msg = "Could not choose the best sample ID for {}".format(sample)
raise ProgramError(msg)
print >>chosenFile, "\t".join([str(oldSamples[sample][chosenIndex]+1),
str(indexes[chosenIndex]+1), sample[0],
sample[1]])
for i, index in enumerate(indexes):
if i != chosenIndex:
print >>excludedFile, "\t".join([str(oldSamples[sample][i]+1),
str(index+1), sample[0],
sample[1]])
chosenIndexes[sample] = indexes[chosenIndex]
chosenFile.close()
excludedFile.close()
return chosenIndexes, completion, sampleConcordance |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'order_qc_dir'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'dirnames'},{'id': '5', 'type': 'block', 'children': ['6']},{'id': '6', 'type': 'return_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '9', 'type': 'argument_list', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'dirnames'},{'id': '11', 'type': 'keyword_argument', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '13', 'type': 'lambda', 'children': ['14', '16']},{'id': '14', 'type': 'lambda_parameters', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'dn'},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'strptime'},{'id': '20', 'type': 'argument_list', 'children': ['21', '38']},{'id': '21', 'type': 'subscript', 'children': ['22', '35']},{'id': '22', 'type': 'call', 'children': ['23', '28']},{'id': '23', 'type': 'attribute', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'dn'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'rstrip'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'string', 'children': [], 'value': '"/"'},{'id': '35', 'type': 'slice', 'children': ['36', '37']},{'id': '36', 'type': 'integer', 'children': [], 'value': '14'},{'id': '37', 'type': 'colon', 'children': []},{'id': '38', 'type': 'string', 'children': [], 'value': '"%Y-%m-%d_%H.%M.%S"'} | def order_qc_dir(dirnames):
return sorted(
dirnames, key=lambda dn: time.strptime(
os.path.basename(dn.rstrip("/"))[14:],
"%Y-%m-%d_%H.%M.%S",
)
) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'fetch'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'webfonts'},{'id': '6', 'type': 'block', 'children': ['7', '18']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'webfonts'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '17', 'type': 'argument_list', 'children': []},{'id': '18', 'type': 'for_statement', 'children': ['19', '20', '21']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'webfont_name'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '27', 'type': 'argument_list', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'webfont_name'},{'id': '29', 'type': 'subscript', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'webfonts'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'webfont_name'} | def fetch(self, webfonts):
sorted_keys = sorted(webfonts.keys())
for webfont_name in sorted_keys:
self.get(webfont_name, webfonts[webfont_name]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_index'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '7', 'type': 'True', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '23']},{'id': '9', 'type': 'if_statement', 'children': ['10', '17']},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '12', 'type': 'argument_list', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'MultiIndex'},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'raise_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'string', 'children': [], 'value': "'Weld does not yet support sorting on multiple columns'"},{'id': '23', 'type': 'return_statement', 'children': ['24']},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'sort_values'},{'id': '28', 'type': 'argument_list', 'children': ['29', '36']},{'id': '29', 'type': 'call', 'children': ['30', '35']},{'id': '30', 'type': 'attribute', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '34', 'type': 'identifier', 'children': [], 'value': '_gather_names'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def sort_index(self, ascending=True):
if isinstance(self.index, MultiIndex):
raise NotImplementedError('Weld does not yet support sorting on multiple columns')
return self.sort_values(self.index._gather_names(), ascending) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_values'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '8', 'type': 'True', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '16', '21', '28', '41', '49', '55', '75', '86', '97', '107', '120', '131']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'check_type'},{'id': '13', 'type': 'argument_list', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'call', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'check_str_or_list_str'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '24', 'type': 'call', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'as_list'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '28', 'type': 'if_statement', 'children': ['29', '35']},{'id': '29', 'type': 'comparison_operator', 'children': ['30', '34'], 'value': '>'},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '34', 'type': 'integer', 'children': [], 'value': '1'},{'id': '35', 'type': 'block', 'children': ['36']},{'id': '36', 'type': 'raise_statement', 'children': ['37']},{'id': '37', 'type': 'call', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'},{'id': '39', 'type': 'argument_list', 'children': ['40']},{'id': '40', 'type': 'string', 'children': [], 'value': "'Weld does not yet support sorting on multiple columns'"},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'all_data'},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'reset_index'},{'id': '48', 'type': 'argument_list', 'children': []},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'by_data'},{'id': '52', 'type': 'subscript', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'all_data'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'by'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'assignment', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'sorted_indices'},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'weld_sort'},{'id': '60', 'type': 'argument_list', 'children': ['61', '66', '71', '72']},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'by_data'},{'id': '64', 'type': 'identifier', 'children': [], 'value': '_gather_data_for_weld'},{'id': '65', 'type': 'argument_list', 'children': []},{'id': '66', 'type': 'call', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'by_data'},{'id': '69', 'type': 'identifier', 'children': [], 'value': '_gather_weld_types'},{'id': '70', 'type': 'argument_list', 'children': []},{'id': '71', 'type': 'string', 'children': [], 'value': "'sort_index'"},{'id': '72', 'type': 'keyword_argument', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'new_index'},{'id': '78', 'type': 'call', 'children': ['79', '84']},{'id': '79', 'type': 'attribute', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '83', 'type': 'identifier', 'children': [], 'value': '_iloc_indices'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'sorted_indices'},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'new_columns'},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'call', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '95', 'type': 'identifier', 'children': [], 'value': '_iter'},{'id': '96', 'type': 'argument_list', 'children': []},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'new_column_names'},{'id': '100', 'type': 'list_comprehension', 'children': ['101', '104']},{'id': '101', 'type': 'attribute', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '104', 'type': 'for_in_clause', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'new_columns'},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'new_columns'},{'id': '110', 'type': 'list_comprehension', 'children': ['111', '117']},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': '_series_iloc'},{'id': '113', 'type': 'argument_list', 'children': ['114', '115', '116']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'sorted_indices'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'new_index'},{'id': '117', 'type': 'for_in_clause', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'column'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'new_columns'},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'assignment', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '123', 'type': 'call', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '125', 'type': 'argument_list', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '128', 'type': 'argument_list', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'new_column_names'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'new_columns'},{'id': '131', 'type': 'return_statement', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'DataFrame'},{'id': '134', 'type': 'argument_list', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'new_data'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'new_index'} | def sort_values(self, by, ascending=True):
check_type(ascending, bool)
check_str_or_list_str(by)
by = as_list(by)
if len(by) > 1:
raise NotImplementedError('Weld does not yet support sorting on multiple columns')
all_data = self.reset_index()
by_data = all_data[by]
sorted_indices = weld_sort(by_data._gather_data_for_weld(),
by_data._gather_weld_types(),
'sort_index',
ascending=ascending)
new_index = self.index._iloc_indices(sorted_indices)
new_columns = list(self._iter())
new_column_names = [column.name for column in new_columns]
new_columns = [_series_iloc(column, sorted_indices, new_index) for column in new_columns]
new_data = OrderedDict(zip(new_column_names, new_columns))
return DataFrame(new_data, new_index) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '23']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'optimize_with_repeates'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'fast'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'n_times'},{'id': '13', 'type': 'integer', 'children': [], 'value': '10'},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'lambd'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'lambd_g'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'lambd_n'},{'id': '22', 'type': 'None', 'children': []},{'id': '23', 'type': 'block', 'children': ['24', '33', '46', '50', '67', '223', '246', '260', '264', '282', '333']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'dlimix'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'getVerbose'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '33', 'type': 'if_statement', 'children': ['34', '38']},{'id': '34', 'type': 'not_operator', 'children': ['35']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'init'},{'id': '38', 'type': 'block', 'children': ['39']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'identifier', 'children': [], 'value': '_initGP'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'fast'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '49', 'type': 'list', 'children': [], 'value': '[]'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'fixed0'},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'sp'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'zeros_like'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'subscript', 'children': ['59', '66']},{'id': '59', 'type': 'call', 'children': ['60', '65']},{'id': '60', 'type': 'attribute', 'children': ['61', '64']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'gp'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'getParams'},{'id': '65', 'type': 'argument_list', 'children': []},{'id': '66', 'type': 'string', 'children': [], 'value': "'dataTerm'"},{'id': '67', 'type': 'for_statement', 'children': ['68', '69', '73']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'n_times'},{'id': '73', 'type': 'block', 'children': ['74', '82', '102', '128']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'scales1'},{'id': '77', 'type': 'call', 'children': ['78', '81']},{'id': '78', 'type': 'attribute', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '80', 'type': 'identifier', 'children': [], 'value': '_getScalesRand'},{'id': '81', 'type': 'argument_list', 'children': []},{'id': '82', 'type': 'expression_statement', 'children': ['83']},{'id': '83', 'type': 'assignment', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'fixed1'},{'id': '85', 'type': 'binary_operator', 'children': ['86', '87'], 'value': '*'},{'id': '86', 'type': 'float', 'children': [], 'value': '1e-1'},{'id': '87', 'type': 'call', 'children': ['88', '91']},{'id': '88', 'type': 'attribute', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'sp'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'randn'},{'id': '91', 'type': 'argument_list', 'children': ['92', '97']},{'id': '92', 'type': 'subscript', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'fixed0'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '96', 'type': 'integer', 'children': [], 'value': '0'},{'id': '97', 'type': 'subscript', 'children': ['98', '101']},{'id': '98', 'type': 'attribute', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'fixed0'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '101', 'type': 'integer', 'children': [], 'value': '1'},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'conv'},{'id': '105', 'type': 'call', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'trainGP'},{'id': '109', 'type': 'argument_list', 'children': ['110', '113', '116', '119', '122', '125']},{'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'fast'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'fast'},{'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'scales0'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'scales1'},{'id': '116', 'type': 'keyword_argument', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'fixed0'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'fixed1'},{'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'lambd'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'lambd'},{'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'lambd_g'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'lambd_g'},{'id': '125', 'type': 'keyword_argument', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'lambd_n'},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'lambd_n'},{'id': '128', 'type': 'if_statement', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'conv'},{'id': '130', 'type': 'block', 'children': ['131', '135', '181']},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '134', 'type': 'integer', 'children': [], 'value': '1'},{'id': '135', 'type': 'for_statement', 'children': ['136', '137', '144']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'call', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '142', 'type': 'argument_list', 'children': ['143']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '144', 'type': 'block', 'children': ['145']},{'id': '145', 'type': 'if_statement', 'children': ['146', '167']},{'id': '146', 'type': 'call', 'children': ['147', '150']},{'id': '147', 'type': 'attribute', 'children': ['148', '149']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'sp'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'allclose'},{'id': '150', 'type': 'argument_list', 'children': ['151', '159']},{'id': '151', 'type': 'call', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'call', 'children': ['155', '158']},{'id': '155', 'type': 'attribute', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'getScales'},{'id': '158', 'type': 'argument_list', 'children': []},{'id': '159', 'type': 'call', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'abs'},{'id': '161', 'type': 'argument_list', 'children': ['162']},{'id': '162', 'type': 'subscript', 'children': ['163', '166']},{'id': '163', 'type': 'subscript', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '166', 'type': 'string', 'children': [], 'value': "'scales'"},{'id': '167', 'type': 'block', 'children': ['168', '172', '180']},{'id': '168', 'type': 'expression_statement', 'children': ['169']},{'id': '169', 'type': 'assignment', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '171', 'type': 'integer', 'children': [], 'value': '0'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'augmented_assignment', 'children': ['174', '179'], 'value': '+='},{'id': '174', 'type': 'subscript', 'children': ['175', '178']},{'id': '175', 'type': 'subscript', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '178', 'type': 'string', 'children': [], 'value': "'counter'"},{'id': '179', 'type': 'integer', 'children': [], 'value': '1'},{'id': '180', 'type': 'break_statement', 'children': []},{'id': '181', 'type': 'if_statement', 'children': ['182', '185']},{'id': '182', 'type': 'comparison_operator', 'children': ['183', '184'], 'value': '=='},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'temp'},{'id': '184', 'type': 'integer', 'children': [], 'value': '1'},{'id': '185', 'type': 'block', 'children': ['186', '190', '196', '206', '216']},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'assignment', 'children': ['188', '189']},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '189', 'type': 'dictionary', 'children': []},{'id': '190', 'type': 'expression_statement', 'children': ['191']},{'id': '191', 'type': 'assignment', 'children': ['192', '195']},{'id': '192', 'type': 'subscript', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '194', 'type': 'string', 'children': [], 'value': "'counter'"},{'id': '195', 'type': 'integer', 'children': [], 'value': '1'},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'assignment', 'children': ['198', '201']},{'id': '198', 'type': 'subscript', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '200', 'type': 'string', 'children': [], 'value': "'LML'"},{'id': '201', 'type': 'call', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'getLML'},{'id': '205', 'type': 'argument_list', 'children': []},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'assignment', 'children': ['208', '211']},{'id': '208', 'type': 'subscript', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '210', 'type': 'string', 'children': [], 'value': "'scales'"},{'id': '211', 'type': 'call', 'children': ['212', '215']},{'id': '212', 'type': 'attribute', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'getScales'},{'id': '215', 'type': 'argument_list', 'children': []},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'call', 'children': ['218', '221']},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '221', 'type': 'argument_list', 'children': ['222']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'opt'},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'assignment', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'LML'},{'id': '226', 'type': 'call', 'children': ['227', '230']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'sp'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'array'},{'id': '230', 'type': 'argument_list', 'children': ['231']},{'id': '231', 'type': 'list_comprehension', 'children': ['232', '237']},{'id': '232', 'type': 'subscript', 'children': ['233', '236']},{'id': '233', 'type': 'subscript', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '236', 'type': 'string', 'children': [], 'value': "'LML'"},{'id': '237', 'type': 'for_in_clause', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '239', 'type': 'call', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'call', 'children': ['243', '244']},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '244', 'type': 'argument_list', 'children': ['245']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '246', 'type': 'expression_statement', 'children': ['247']},{'id': '247', 'type': 'assignment', 'children': ['248', '249']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '249', 'type': 'subscript', 'children': ['250', '255']},{'id': '250', 'type': 'call', 'children': ['251', '254']},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'LML'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'argsort'},{'id': '254', 'type': 'argument_list', 'children': []},{'id': '255', 'type': 'slice', 'children': ['256', '257', '258']},{'id': '256', 'type': 'colon', 'children': []},{'id': '257', 'type': 'colon', 'children': []},{'id': '258', 'type': 'unary_operator', 'children': ['259'], 'value': '-'},{'id': '259', 'type': 'integer', 'children': [], 'value': '1'},{'id': '260', 'type': 'expression_statement', 'children': ['261']},{'id': '261', 'type': 'assignment', 'children': ['262', '263']},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '263', 'type': 'list', 'children': [], 'value': '[]'},{'id': '264', 'type': 'if_statement', 'children': ['265', '266']},{'id': '265', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '266', 'type': 'block', 'children': ['267', '272', '277']},{'id': '267', 'type': 'expression_statement', 'children': ['268']},{'id': '268', 'type': 'call', 'children': ['269', '270']},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '270', 'type': 'argument_list', 'children': ['271']},{'id': '271', 'type': 'string', 'children': [], 'value': '"\\nLocal mimima\\n"'},{'id': '272', 'type': 'expression_statement', 'children': ['273']},{'id': '273', 'type': 'call', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '275', 'type': 'argument_list', 'children': ['276']},{'id': '276', 'type': 'string', 'children': [], 'value': '"n_times\\t\\tLML"'},{'id': '277', 'type': 'expression_statement', 'children': ['278']},{'id': '278', 'type': 'call', 'children': ['279', '280']},{'id': '279', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '280', 'type': 'argument_list', 'children': ['281']},{'id': '281', 'type': 'string', 'children': [], 'value': '"------------------------------------"'},{'id': '282', 'type': 'for_statement', 'children': ['283', '284', '291']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '284', 'type': 'call', 'children': ['285', '286']},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '286', 'type': 'argument_list', 'children': ['287']},{'id': '287', 'type': 'call', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '289', 'type': 'argument_list', 'children': ['290']},{'id': '290', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '291', 'type': 'block', 'children': ['292', '303']},{'id': '292', 'type': 'expression_statement', 'children': ['293']},{'id': '293', 'type': 'call', 'children': ['294', '297']},{'id': '294', 'type': 'attribute', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '296', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '297', 'type': 'argument_list', 'children': ['298']},{'id': '298', 'type': 'subscript', 'children': ['299', '300']},{'id': '299', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '300', 'type': 'subscript', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '303', 'type': 'if_statement', 'children': ['304', '305']},{'id': '304', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '305', 'type': 'block', 'children': ['306', '328']},{'id': '306', 'type': 'expression_statement', 'children': ['307']},{'id': '307', 'type': 'call', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '309', 'type': 'argument_list', 'children': ['310']},{'id': '310', 'type': '()', 'children': ['311']},{'id': '311', 'type': 'binary_operator', 'children': ['312', '313'], 'value': '%'},{'id': '312', 'type': 'string', 'children': [], 'value': '"%d\\t\\t%f"'},{'id': '313', 'type': 'tuple', 'children': ['314', '321']},{'id': '314', 'type': 'subscript', 'children': ['315', '320']},{'id': '315', 'type': 'subscript', 'children': ['316', '317']},{'id': '316', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '317', 'type': 'subscript', 'children': ['318', '319']},{'id': '318', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '320', 'type': 'string', 'children': [], 'value': "'counter'"},{'id': '321', 'type': 'subscript', 'children': ['322', '327']},{'id': '322', 'type': 'subscript', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'opt_list'},{'id': '324', 'type': 'subscript', 'children': ['325', '326']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '327', 'type': 'string', 'children': [], 'value': "'LML'"},{'id': '328', 'type': 'expression_statement', 'children': ['329']},{'id': '329', 'type': 'call', 'children': ['330', '331']},{'id': '330', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '331', 'type': 'argument_list', 'children': ['332']},{'id': '332', 'type': 'string', 'children': [], 'value': '""'},{'id': '333', 'type': 'return_statement', 'children': ['334']},{'id': '334', 'type': 'identifier', 'children': [], 'value': 'out'} | def optimize_with_repeates(self,fast=None,verbose=None,n_times=10,lambd=None,lambd_g=None,lambd_n=None):
verbose = dlimix.getVerbose(verbose)
if not self.init: self._initGP(fast)
opt_list = []
fixed0 = sp.zeros_like(self.gp.getParams()['dataTerm'])
for i in range(n_times):
scales1 = self._getScalesRand()
fixed1 = 1e-1*sp.randn(fixed0.shape[0],fixed0.shape[1])
conv = self.trainGP(fast=fast,scales0=scales1,fixed0=fixed1,lambd=lambd,lambd_g=lambd_g,lambd_n=lambd_n)
if conv:
temp=1
for j in range(len(opt_list)):
if sp.allclose(abs(self.getScales()),abs(opt_list[j]['scales'])):
temp=0
opt_list[j]['counter']+=1
break
if temp==1:
opt = {}
opt['counter'] = 1
opt['LML'] = self.getLML()
opt['scales'] = self.getScales()
opt_list.append(opt)
LML = sp.array([opt_list[i]['LML'] for i in range(len(opt_list))])
index = LML.argsort()[::-1]
out = []
if verbose:
print("\nLocal mimima\n")
print("n_times\t\tLML")
print("------------------------------------")
for i in range(len(opt_list)):
out.append(opt_list[index[i]])
if verbose:
print(("%d\t\t%f" % (opt_list[index[i]]['counter'], opt_list[index[i]]['LML'])))
print("")
return out |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_prefixes'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'orig'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '7', 'type': 'string', 'children': [], 'value': "'@+'"},{'id': '8', 'type': 'block', 'children': ['9', '13', '26']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '12', 'type': 'string', 'children': [], 'value': "''"},{'id': '13', 'type': 'for_statement', 'children': ['14', '15', '16']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'prefixes'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'if_statement', 'children': ['18', '21']},{'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'in'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'orig'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'augmented_assignment', 'children': ['24', '25'], 'value': '+='},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'new'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '26', 'type': 'return_statement', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'new'} | def sort_prefixes(orig, prefixes='@+'):
new = ''
for prefix in prefixes:
if prefix in orig:
new += prefix
return new |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_children'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'attribute'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'reverse_order'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '16', '113', '119', '133']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted_children'},{'id': '15', 'type': 'list', 'children': [], 'value': '[]'},{'id': '16', 'type': 'if_statement', 'children': ['17', '18', '88']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'attribute'},{'id': '18', 'type': 'block', 'children': ['19', '23', '27', '57', '81']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'sortable_children'},{'id': '22', 'type': 'list', 'children': [], 'value': '[]'},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'unsortable_children'},{'id': '26', 'type': 'list', 'children': [], 'value': '[]'},{'id': '27', 'type': 'for_statement', 'children': ['28', '29', '32']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '31', 'type': 'identifier', 'children': [], 'value': '__children'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'if_statement', 'children': ['34', '40', '48']},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'attribute_exists'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'attribute'},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'sortable_children'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '48', 'type': 'else_clause', 'children': ['49']},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'unsortable_children'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'sorted_children'},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '62', 'type': 'argument_list', 'children': ['63', '64', '76']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'sortable_children'},{'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '66', 'type': 'lambda', 'children': ['67', '69']},{'id': '67', 'type': 'lambda_parameters', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '69', 'type': 'attribute', 'children': ['70', '75']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '72', 'type': 'argument_list', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'attribute'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '78', 'type': 'boolean_operator', 'children': ['79', '80'], 'value': 'or'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'reverse_order'},{'id': '80', 'type': 'False', 'children': []},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '86']},{'id': '83', 'type': 'attribute', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'sorted_children'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'unsortable_children'},{'id': '88', 'type': 'else_clause', 'children': ['89']},{'id': '89', 'type': 'block', 'children': ['90']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'sorted_children'},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '95', 'type': 'argument_list', 'children': ['96', '99', '108']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '101', 'type': 'lambda', 'children': ['102', '104']},{'id': '102', 'type': 'lambda_parameters', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '104', 'type': '()', 'children': ['105']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '108', 'type': 'keyword_argument', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '110', 'type': 'boolean_operator', 'children': ['111', '112'], 'value': 'or'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'reverse_order'},{'id': '112', 'type': 'False', 'children': []},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '117', 'type': 'identifier', 'children': [], 'value': '__children'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'sorted_children'},{'id': '119', 'type': 'for_statement', 'children': ['120', '121', '124']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '123', 'type': 'identifier', 'children': [], 'value': '__children'},{'id': '124', 'type': 'block', 'children': ['125']},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'sort_children'},{'id': '130', 'type': 'argument_list', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'attribute'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'reverse_order'},{'id': '133', 'type': 'return_statement', 'children': ['134']},{'id': '134', 'type': 'True', 'children': []} | def sort_children(self, attribute=None, reverse_order=False):
sorted_children = []
if attribute:
sortable_children = []
unsortable_children = []
for child in self.__children:
if child.attribute_exists(attribute):
sortable_children.append(child)
else:
unsortable_children.append(child)
sorted_children = sorted(sortable_children, key=lambda x: getattr(
x, attribute).value, reverse=reverse_order or False)
sorted_children.extend(unsortable_children)
else:
sorted_children = sorted(self.children, key=lambda x: (x.name), reverse=reverse_order or False)
self.__children = sorted_children
for child in self.__children:
child.sort_children(attribute, reverse_order)
return True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_kw_matches'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'skw_matches'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '7', 'type': 'integer', 'children': [], 'value': '0'},{'id': '8', 'type': 'block', 'children': ['9', '20', '31']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorted_keywords'},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'skw_matches'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '19', 'type': 'argument_list', 'children': []},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '23', 'type': 'argument_list', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'sorted_keywords'},{'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'cmp_to_key'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': '_skw_matches_comparator'},{'id': '31', 'type': 'return_statement', 'children': ['32']},{'id': '32', 'type': 'boolean_operator', 'children': ['33', '40'], 'value': 'or'},{'id': '33', 'type': 'boolean_operator', 'children': ['34', '35'], 'value': 'and'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '35', 'type': 'subscript', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'sorted_keywords'},{'id': '37', 'type': 'slice', 'children': ['38', '39']},{'id': '38', 'type': 'colon', 'children': []},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'sorted_keywords'} | def _sort_kw_matches(skw_matches, limit=0):
sorted_keywords = list(skw_matches.items())
sorted(sorted_keywords, key=cmp_to_key(_skw_matches_comparator))
return limit and sorted_keywords[:limit] or sorted_keywords |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'trim'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'n_peaks'},{'id': '6', 'type': 'block', 'children': ['7', '13']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'call', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sortByIntensity'},{'id': '12', 'type': 'argument_list', 'children': []},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'ims'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'spectrum_trim'},{'id': '18', 'type': 'argument_list', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'ptr'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'n_peaks'} | def trim(self, n_peaks):
self.sortByIntensity()
ims.spectrum_trim(self.ptr, n_peaks) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'centroids'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'window_size'},{'id': '7', 'type': 'integer', 'children': [], 'value': '5'},{'id': '8', 'type': 'block', 'children': ['9', '15', '25', '35', '41', '60']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sortByMass'},{'id': '14', 'type': 'argument_list', 'children': []},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'mzs'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_cffi_buffer'},{'id': '20', 'type': 'argument_list', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'masses'},{'id': '24', 'type': 'string', 'children': [], 'value': "'d'"},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'intensities'},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': '_cffi_buffer'},{'id': '30', 'type': 'argument_list', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'intensities'},{'id': '34', 'type': 'string', 'children': [], 'value': "'f'"},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'size'},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'ims'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'spectrum_new_from_raw'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50', '53', '56']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'mzs'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'ptr'},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'intensities'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'ptr'},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'window_size'},{'id': '60', 'type': 'return_statement', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': '_new_spectrum'},{'id': '63', 'type': 'argument_list', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'CentroidedSpectrum'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'p'} | def centroids(self, window_size=5):
self.sortByMass()
mzs = _cffi_buffer(self.masses, 'd')
intensities = _cffi_buffer(self.intensities, 'f')
n = self.size
p = ims.spectrum_new_from_raw(n, mzs.ptr, intensities.ptr, int(window_size))
return _new_spectrum(CentroidedSpectrum, p) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_engines_by_priority'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'engines'},{'id': '6', 'type': 'None', 'children': []},{'id': '7', 'type': 'block', 'children': ['8', '17']},{'id': '8', 'type': 'if_statement', 'children': ['9', '12']},{'id': '9', 'type': 'comparison_operator', 'children': ['10', '11'], 'value': 'is'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'engines'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'block', 'children': ['13']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'engines'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'ENGINES'},{'id': '17', 'type': 'return_statement', 'children': ['18']},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '20', 'type': 'argument_list', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'engines'},{'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'operator'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'methodcaller'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'string', 'children': [], 'value': '"priority"'} | def list_engines_by_priority(engines=None):
if engines is None:
engines = ENGINES
return sorted(engines, key=operator.methodcaller("priority")) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'union'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'dict1'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'dict2'},{'id': '6', 'type': 'block', 'children': ['7', '48']},{'id': '7', 'type': 'for_statement', 'children': ['8', '11', '16']},{'id': '8', 'type': 'pattern_list', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'dict2'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'if_statement', 'children': ['18', '27', '40']},{'id': '18', 'type': 'boolean_operator', 'children': ['19', '22'], 'value': 'and'},{'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': 'in'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dict1'},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '24', 'type': 'argument_list', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '33']},{'id': '30', 'type': 'subscript', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'dict1'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'union'},{'id': '35', 'type': 'argument_list', 'children': ['36', '39']},{'id': '36', 'type': 'subscript', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'dict1'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '40', 'type': 'else_clause', 'children': ['41']},{'id': '41', 'type': 'block', 'children': ['42']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '47']},{'id': '44', 'type': 'subscript', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'dict1'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '48', 'type': 'return_statement', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'dict1'} | def union(dict1, dict2):
for key, value in dict2.items():
if key in dict1 and isinstance(value, dict):
dict1[key] = union(dict1[key], value)
else:
dict1[key] = value
return dict1 |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_format_data'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '6', 'type': 'block', 'children': ['7']},{'id': '7', 'type': 'return_statement', 'children': ['8']},{'id': '8', 'type': 'list_comprehension', 'children': ['9', '10', '37']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'spectrum'},{'id': '10', 'type': 'for_in_clause', 'children': ['11', '12', '13']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'spectrum'},{'id': '12', 'type': 'line_continuation', 'children': [], 'value': '\\'},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '15', 'type': 'argument_list', 'children': ['16', '27']},{'id': '16', 'type': 'conditional_expression', 'children': ['17', '18', '25'], 'value': 'if'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '20', 'type': 'argument_list', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '22', 'type': 'tuple', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '25', 'type': 'list', 'children': ['26'], 'value': '[data]'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '29', 'type': 'lambda', 'children': ['30', '32']},{'id': '30', 'type': 'lambda_parameters', 'children': ['31']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '32', 'type': 'subscript', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'disp'},{'id': '36', 'type': 'integer', 'children': [], 'value': '0'},{'id': '37', 'type': 'if_clause', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'isfinite'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'spectrum'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'flux'} | def _format_data(self, data):
return [spectrum for spectrum in \
sorted(data if isinstance(data, (list, tuple)) else [data],
key=lambda x: x.disp[0]) if np.any(np.isfinite(spectrum.flux))] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_sorting'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '6', 'type': 'dictionary_splat_pattern', 'children': ['7']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'resources'},{'id': '8', 'type': 'block', 'children': ['9', '13', '21', '31']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorting'},{'id': '12', 'type': 'list', 'children': [], 'value': '[]'},{'id': '13', 'type': 'if_statement', 'children': ['14', '18']},{'id': '14', 'type': 'not_operator', 'children': ['15']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'GET'},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'return_statement', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'sorting'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'prefix'},{'id': '24', 'type': 'binary_operator', 'children': ['25', '30'], 'value': '+'},{'id': '25', 'type': 'attribute', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'dyn_prefix'},{'id': '30', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '31', 'type': 'return_statement', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '38']},{'id': '33', 'type': 'attribute', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'GET'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'getlist'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'prefix'} | def get_sorting(self, request, **resources):
sorting = []
if not request.GET:
return sorting
prefix = self._meta.dyn_prefix + 'sort'
return request.GET.getlist(prefix) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort_tuples'},{'id': '7', 'type': 'block', 'children': ['8', '10', '14', '72']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'string', 'children': [], 'value': "''' pymongo-style sorting. Accepts a list of tuples.\n :param sort_tuples: varargs of sort tuples.\n '''"},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'for_statement', 'children': ['15', '18', '19']},{'id': '15', 'type': 'pattern_list', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'sort_tuples'},{'id': '19', 'type': 'block', 'children': ['20', '30']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'resolve_name'},{'id': '25', 'type': 'argument_list', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '30', 'type': 'if_statement', 'children': ['31', '36', '46', '63']},{'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': 'in'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '33', 'type': 'tuple', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'},{'id': '35', 'type': 'integer', 'children': [], 'value': '1'},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'ascending'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '46', 'type': 'elif_clause', 'children': ['47', '53']},{'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': 'in'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '49', 'type': 'tuple', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'DESCENDING'},{'id': '51', 'type': 'unary_operator', 'children': ['52'], 'value': '-'},{'id': '52', 'type': 'integer', 'children': [], 'value': '1'},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '57', 'type': 'call', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'descending'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '63', 'type': 'else_clause', 'children': ['64']},{'id': '64', 'type': 'block', 'children': ['65']},{'id': '65', 'type': 'raise_statement', 'children': ['66']},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'BadQueryException'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'binary_operator', 'children': ['70', '71'], 'value': '%'},{'id': '70', 'type': 'string', 'children': [], 'value': "'Bad sort direction: %s'"},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '72', 'type': 'return_statement', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'query'} | def sort(self, *sort_tuples):
''' pymongo-style sorting. Accepts a list of tuples.
:param sort_tuples: varargs of sort tuples.
'''
query = self
for name, direction in sort_tuples:
field = resolve_name(self.type, name)
if direction in (ASCENDING, 1):
query = query.ascending(field)
elif direction in (DESCENDING, -1):
query = query.descending(field)
else:
raise BadQueryException('Bad sort direction: %s' % direction)
return query |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_has_bad_coords'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '6', 'type': 'block', 'children': ['7', '14', '29', '38', '55']},{'id': '7', 'type': 'if_statement', 'children': ['8', '11']},{'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': '=='},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '10', 'type': 'string', 'children': [], 'value': '"com.dc3/dc3.broker"'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'return_statement', 'children': ['13']},{'id': '13', 'type': 'True', 'children': []},{'id': '14', 'type': 'if_statement', 'children': ['15', '26']},{'id': '15', 'type': 'not_operator', 'children': ['16']},{'id': '16', 'type': 'comparison_operator', 'children': ['17', '25'], 'value': '=='},{'id': '17', 'type': 'subscript', 'children': ['18', '24']},{'id': '18', 'type': 'call', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '24', 'type': 'integer', 'children': [], 'value': '0'},{'id': '25', 'type': 'string', 'children': [], 'value': "'nasa.gsfc.gcn'"},{'id': '26', 'type': 'block', 'children': ['27']},{'id': '27', 'type': 'return_statement', 'children': ['28']},{'id': '28', 'type': 'False', 'children': []},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'toplevel_params'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'vp'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'get_toplevel_params'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '38', 'type': 'if_statement', 'children': ['39', '42']},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'in'},{'id': '40', 'type': 'string', 'children': [], 'value': '"Coords_String"'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'toplevel_params'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'if_statement', 'children': ['44', '52']},{'id': '44', 'type': '()', 'children': ['45']},{'id': '45', 'type': 'comparison_operator', 'children': ['46', '51'], 'value': '=='},{'id': '46', 'type': 'subscript', 'children': ['47', '50']},{'id': '47', 'type': 'subscript', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'toplevel_params'},{'id': '49', 'type': 'string', 'children': [], 'value': '"Coords_String"'},{'id': '50', 'type': 'string', 'children': [], 'value': "'value'"},{'id': '51', 'type': 'string', 'children': [], 'value': '"unavailable/inappropriate"'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'return_statement', 'children': ['54']},{'id': '54', 'type': 'True', 'children': []},{'id': '55', 'type': 'return_statement', 'children': ['56']},{'id': '56', 'type': 'False', 'children': []} | def _has_bad_coords(root, stream):
if stream == "com.dc3/dc3.broker":
return True
if not stream.split('/')[0] == 'nasa.gsfc.gcn':
return False
toplevel_params = vp.get_toplevel_params(root)
if "Coords_String" in toplevel_params:
if (toplevel_params["Coords_String"]['value'] ==
"unavailable/inappropriate"):
return True
return False |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19', '31']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_chain'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'typed_parameter', 'children': ['5', '7']},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ranges'},{'id': '7', 'type': 'type', 'children': ['8']},{'id': '8', 'type': 'generic_type', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'Iterable'},{'id': '10', 'type': 'type_parameter', 'children': ['11']},{'id': '11', 'type': 'type', 'children': ['12']},{'id': '12', 'type': 'generic_type', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'Tuple'},{'id': '14', 'type': 'type_parameter', 'children': ['15', '17']},{'id': '15', 'type': 'type', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '17', 'type': 'type', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '19', 'type': 'type', 'children': ['20']},{'id': '20', 'type': 'generic_type', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'List'},{'id': '22', 'type': 'type_parameter', 'children': ['23']},{'id': '23', 'type': 'type', 'children': ['24']},{'id': '24', 'type': 'generic_type', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'Tuple'},{'id': '26', 'type': 'type_parameter', 'children': ['27', '29']},{'id': '27', 'type': 'type', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '29', 'type': 'type', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'return_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'call', 'children': ['37', '40']},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'list_splat', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ranges'} | def sorted_chain(*ranges: Iterable[Tuple[int, int]]) -> List[Tuple[int, int]]:
return sorted(itertools.chain(*ranges)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'partition_range'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '15', '19', '27', '127']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '12', 'type': 'boolean_operator', 'children': ['13', '14'], 'value': 'or'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '14', 'type': 'list', 'children': [], 'value': '[]'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'partitioning'},{'id': '18', 'type': 'list', 'children': [], 'value': '[]'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '24']},{'id': '21', 'type': 'pattern_list', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'part_start'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'part_levels'},{'id': '24', 'type': 'expression_list', 'children': ['25', '26']},{'id': '25', 'type': 'integer', 'children': [], 'value': '0'},{'id': '26', 'type': 'None', 'children': []},{'id': '27', 'type': 'for_statement', 'children': ['28', '29', '51']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'call', 'children': ['36', '39']},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '39', 'type': 'argument_list', 'children': ['40', '43']},{'id': '40', 'type': 'list', 'children': ['41', '42'], 'value': '[0, stop]'},{'id': '41', 'type': 'integer', 'children': [], 'value': '0'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '43', 'type': 'list_splat', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'list_splat', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '51', 'type': 'block', 'children': ['52', '68', '94', '104']},{'id': '52', 'type': 'if_statement', 'children': ['53', '56']},{'id': '53', 'type': 'comparison_operator', 'children': ['54', '55'], 'value': '=='},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '56', 'type': 'block', 'children': ['57', '67']},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '62']},{'id': '59', 'type': 'attribute', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'partitioning'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'tuple', 'children': ['64', '65', '66']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'part_start'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'part_levels'},{'id': '67', 'type': 'break_statement', 'children': []},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '71', 'type': 'set_comprehension', 'children': ['72', '73', '81']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '73', 'type': 'for_in_clause', 'children': ['74', '77']},{'id': '74', 'type': 'pattern_list', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'regions'},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '81', 'type': 'if_clause', 'children': ['82']},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'any'},{'id': '84', 'type': 'generator_expression', 'children': ['85', '89']},{'id': '85', 'type': 'comparison_operator', 'children': ['86', '87', '88'], 'value': '<='},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '89', 'type': 'for_in_clause', 'children': ['90', '93']},{'id': '90', 'type': 'pattern_list', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'regions'},{'id': '94', 'type': 'if_statement', 'children': ['95', '98']},{'id': '95', 'type': 'comparison_operator', 'children': ['96', '97'], 'value': '=='},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '97', 'type': 'integer', 'children': [], 'value': '0'},{'id': '98', 'type': 'block', 'children': ['99', '103']},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'part_levels'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '103', 'type': 'continue_statement', 'children': []},{'id': '104', 'type': 'if_statement', 'children': ['105', '108']},{'id': '105', 'type': 'comparison_operator', 'children': ['106', '107'], 'value': '!='},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'part_levels'},{'id': '108', 'type': 'block', 'children': ['109', '119']},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'call', 'children': ['111', '114']},{'id': '111', 'type': 'attribute', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'partitioning'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '114', 'type': 'argument_list', 'children': ['115']},{'id': '115', 'type': 'tuple', 'children': ['116', '117', '118']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'part_start'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'part_levels'},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '124']},{'id': '121', 'type': 'pattern_list', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'part_start'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'part_levels'},{'id': '124', 'type': 'expression_list', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '127', 'type': 'return_statement', 'children': ['128']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'partitioning'} | def partition_range(stop, annotations=None):
annotations = annotations or []
partitioning = []
part_start, part_levels = 0, None
for p in sorted(set(itertools.chain([0, stop],
*itertools.chain(*annotations)))):
if p == stop:
partitioning.append( (part_start, p, part_levels) )
break
levels = {level for level, regions in enumerate(annotations)
if any(x <= p < y for x, y in regions)}
if p == 0:
part_levels = levels
continue
if levels != part_levels:
partitioning.append( (part_start, p, part_levels) )
part_start, part_levels = p, levels
return partitioning |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'pprint_sequence'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '10', 'type': 'integer', 'children': [], 'value': '10'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'blocks_per_line'},{'id': '13', 'type': 'integer', 'children': [], 'value': '6'},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'PlaintextFormat'},{'id': '17', 'type': 'block', 'children': ['18', '24', '35', '71', '95', '271']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '21', 'type': 'boolean_operator', 'children': ['22', '23'], 'value': 'or'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '23', 'type': 'list', 'children': [], 'value': '[]'},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'partitioning'},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'partition_range'},{'id': '29', 'type': 'argument_list', 'children': ['30', '34']},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '38', 'type': 'binary_operator', 'children': ['39', '63'], 'value': '+'},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'binary_operator', 'children': ['43', '62'], 'value': '+'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'math'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'floor'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'math'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '52', 'type': 'argument_list', 'children': ['53', '61']},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '55', 'type': 'argument_list', 'children': ['56', '60']},{'id': '56', 'type': 'call', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '60', 'type': 'integer', 'children': [], 'value': '1'},{'id': '61', 'type': 'integer', 'children': [], 'value': '10'},{'id': '62', 'type': 'integer', 'children': [], 'value': '1'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'subscript', 'children': ['67', '70']},{'id': '67', 'type': 'attribute', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '70', 'type': 'integer', 'children': [], 'value': '0'},{'id': '71', 'type': 'expression_statement', 'children': ['72']},{'id': '72', 'type': 'assignment', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '74', 'type': 'binary_operator', 'children': ['75', '94'], 'value': '+'},{'id': '75', 'type': 'binary_operator', 'children': ['76', '89'], 'value': '+'},{'id': '76', 'type': 'call', 'children': ['77', '87']},{'id': '77', 'type': 'attribute', 'children': ['78', '86']},{'id': '78', 'type': '()', 'children': ['79']},{'id': '79', 'type': 'binary_operator', 'children': ['80', '85'], 'value': '+'},{'id': '80', 'type': 'subscript', 'children': ['81', '84']},{'id': '81', 'type': 'attribute', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '84', 'type': 'integer', 'children': [], 'value': '0'},{'id': '85', 'type': 'string', 'children': [], 'value': "'1'"},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'rjust'},{'id': '87', 'type': 'argument_list', 'children': ['88']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '89', 'type': 'subscript', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '93', 'type': 'integer', 'children': [], 'value': '1'},{'id': '94', 'type': 'string', 'children': [], 'value': "' '"},{'id': '95', 'type': 'for_statement', 'children': ['96', '97', '106']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '97', 'type': 'call', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '99', 'type': 'argument_list', 'children': ['100', '101', '105']},{'id': '100', 'type': 'integer', 'children': [], 'value': '0'},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '106', 'type': 'block', 'children': ['107', '141', '145', '215']},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'assignment', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'block'},{'id': '110', 'type': 'list_comprehension', 'children': ['111', '125', '131']},{'id': '111', 'type': 'tuple', 'children': ['112', '117', '124']},{'id': '112', 'type': 'call', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '114', 'type': 'argument_list', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '117', 'type': 'call', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'min'},{'id': '119', 'type': 'argument_list', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '121', 'type': 'binary_operator', 'children': ['122', '123'], 'value': '+'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '125', 'type': 'for_in_clause', 'children': ['126', '130']},{'id': '126', 'type': 'pattern_list', 'children': ['127', '128', '129']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'partitioning'},{'id': '131', 'type': 'if_clause', 'children': ['132']},{'id': '132', 'type': 'boolean_operator', 'children': ['133', '138'], 'value': 'and'},{'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': '<'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '135', 'type': 'binary_operator', 'children': ['136', '137'], 'value': '+'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '138', 'type': 'comparison_operator', 'children': ['139', '140'], 'value': '>'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '141', 'type': 'expression_statement', 'children': ['142']},{'id': '142', 'type': 'augmented_assignment', 'children': ['143', '144'], 'value': '+='},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '144', 'type': 'string', 'children': [], 'value': "' '"},{'id': '145', 'type': 'for_statement', 'children': ['146', '150', '151']},{'id': '146', 'type': 'pattern_list', 'children': ['147', '148', '149']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'block'},{'id': '151', 'type': 'block', 'children': ['152', '175']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'assignment', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'delimiters'},{'id': '155', 'type': 'list_comprehension', 'children': ['156', '159', '171']},{'id': '156', 'type': 'tuple', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '159', 'type': 'for_in_clause', 'children': ['160', '165']},{'id': '160', 'type': 'pattern_list', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '162', 'type': 'tuple_pattern', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '165', 'type': 'call', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '167', 'type': 'argument_list', 'children': ['168']},{'id': '168', 'type': 'attribute', 'children': ['169', '170']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'annotations'},{'id': '171', 'type': 'if_clause', 'children': ['172']},{'id': '172', 'type': 'comparison_operator', 'children': ['173', '174'], 'value': 'in'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'levels'},{'id': '175', 'type': 'expression_statement', 'children': ['176']},{'id': '176', 'type': 'augmented_assignment', 'children': ['177', '178'], 'value': '+='},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '178', 'type': '()', 'children': ['179']},{'id': '179', 'type': 'binary_operator', 'children': ['180', '204'], 'value': '+'},{'id': '180', 'type': 'binary_operator', 'children': ['181', '195'], 'value': '+'},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'string', 'children': [], 'value': "''"},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '185', 'type': 'generator_expression', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '187', 'type': 'for_in_clause', 'children': ['188', '191']},{'id': '188', 'type': 'pattern_list', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '191', 'type': 'call', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '193', 'type': 'argument_list', 'children': ['194']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'delimiters'},{'id': '195', 'type': 'call', 'children': ['196', '197']},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '197', 'type': 'argument_list', 'children': ['198']},{'id': '198', 'type': 'subscript', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '200', 'type': 'slice', 'children': ['201', '202', '203']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '202', 'type': 'colon', 'children': []},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '204', 'type': 'call', 'children': ['205', '208']},{'id': '205', 'type': 'attribute', 'children': ['206', '207']},{'id': '206', 'type': 'string', 'children': [], 'value': "''"},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '208', 'type': 'generator_expression', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '210', 'type': 'for_in_clause', 'children': ['211', '214']},{'id': '211', 'type': 'pattern_list', 'children': ['212', '213']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'left'},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'right'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'delimiters'},{'id': '215', 'type': 'if_statement', 'children': ['216', '236']},{'id': '216', 'type': '()', 'children': ['217']},{'id': '217', 'type': 'boolean_operator', 'children': ['218', '228'], 'value': 'and'},{'id': '218', 'type': 'not_operator', 'children': ['219']},{'id': '219', 'type': 'binary_operator', 'children': ['220', '224'], 'value': '%'},{'id': '220', 'type': '()', 'children': ['221']},{'id': '221', 'type': 'binary_operator', 'children': ['222', '223'], 'value': '+'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '224', 'type': '()', 'children': ['225']},{'id': '225', 'type': 'binary_operator', 'children': ['226', '227'], 'value': '*'},{'id': '226', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'blocks_per_line'},{'id': '228', 'type': 'comparison_operator', 'children': ['229', '232'], 'value': '<'},{'id': '229', 'type': 'binary_operator', 'children': ['230', '231'], 'value': '+'},{'id': '230', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '232', 'type': 'call', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '234', 'type': 'argument_list', 'children': ['235']},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'sequence'},{'id': '236', 'type': 'block', 'children': ['237']},{'id': '237', 'type': 'expression_statement', 'children': ['238']},{'id': '238', 'type': 'augmented_assignment', 'children': ['239', '240'], 'value': '+='},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'result'},{'id': '240', 'type': '()', 'children': ['241']},{'id': '241', 'type': 'binary_operator', 'children': ['242', '270'], 'value': '+'},{'id': '242', 'type': 'binary_operator', 'children': ['243', '265'], 'value': '+'},{'id': '243', 'type': 'binary_operator', 'children': ['244', '245'], 'value': '+'},{'id': '244', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '245', 'type': 'call', 'children': ['246', '263']},{'id': '246', 'type': 'attribute', 'children': ['247', '262']},{'id': '247', 'type': '()', 'children': ['248']},{'id': '248', 'type': 'binary_operator', 'children': ['249', '254'], 'value': '+'},{'id': '249', 'type': 'subscript', 'children': ['250', '253']},{'id': '250', 'type': 'attribute', 'children': ['251', '252']},{'id': '251', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '253', 'type': 'integer', 'children': [], 'value': '0'},{'id': '254', 'type': 'call', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '256', 'type': 'argument_list', 'children': ['257']},{'id': '257', 'type': 'binary_operator', 'children': ['258', '261'], 'value': '+'},{'id': '258', 'type': 'binary_operator', 'children': ['259', '260'], 'value': '+'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'block_length'},{'id': '261', 'type': 'integer', 'children': [], 'value': '1'},{'id': '262', 'type': 'identifier', 'children': [], 'value': 'rjust'},{'id': '263', 'type': 'argument_list', 'children': ['264']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '265', 'type': 'subscript', 'children': ['266', '269']},{'id': '266', 'type': 'attribute', 'children': ['267', '268']},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'margin'},{'id': '269', 'type': 'integer', 'children': [], 'value': '1'},{'id': '270', 'type': 'string', 'children': [], 'value': "' '"},{'id': '271', 'type': 'return_statement', 'children': ['272']},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'result'} | def pprint_sequence(sequence, annotations=None, block_length=10,
blocks_per_line=6, format=PlaintextFormat):
annotations = annotations or []
partitioning = partition_range(len(sequence), annotations)
margin = int(math.floor(math.log(max(len(sequence), 1), 10))
+ 1) + len(format.margin[0])
result = (format.margin[0] + '1').rjust(margin) + format.margin[1] + ' '
for p in range(0, len(sequence), block_length):
block = [(max(start, p), min(stop, p + block_length), levels)
for start, stop, levels in partitioning
if start < p + block_length and stop > p]
result += ' '
for start, stop, levels in block:
delimiters = [(left, right) for level, (left, right)
in enumerate(format.annotations) if level in levels]
result += (''.join(left for left, right in reversed(delimiters)) +
str(sequence[start:stop]) +
''.join(right for left, right in delimiters))
if (not (p + block_length) % (block_length * blocks_per_line) and
p + block_length < len(sequence)):
result += ('\n' + (format.margin[0] +
str(p + block_length + 1)).rjust(margin) +
format.margin[1] + ' ')
return result |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '32']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'tabulate'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'v_level_indexes'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'h_level_indexes'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'v_level_visibility'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'h_level_visibility'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'default_parameter', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'v_level_sort_keys'},{'id': '19', 'type': 'None', 'children': []},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'h_level_sort_keys'},{'id': '22', 'type': 'None', 'children': []},{'id': '23', 'type': 'default_parameter', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'v_level_titles'},{'id': '25', 'type': 'None', 'children': []},{'id': '26', 'type': 'default_parameter', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'h_level_titles'},{'id': '28', 'type': 'None', 'children': []},{'id': '29', 'type': 'default_parameter', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'empty'},{'id': '31', 'type': 'string', 'children': [], 'value': '""'},{'id': '32', 'type': 'block', 'children': ['33', '40', '54', '69', '84', '99', '109', '119', '127', '135']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'level_keys'},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'breadth_first'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '45']},{'id': '42', 'type': 'pattern_list', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'v_level_indexes'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'h_level_indexes'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'validate_level_indexes'},{'id': '47', 'type': 'argument_list', 'children': ['48', '52', '53']},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'level_keys'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'v_level_indexes'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'h_level_indexes'},{'id': '54', 'type': 'if_statement', 'children': ['55', '58']},{'id': '55', 'type': 'comparison_operator', 'children': ['56', '57'], 'value': 'is'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'v_level_visibility'},{'id': '57', 'type': 'None', 'children': []},{'id': '58', 'type': 'block', 'children': ['59']},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'v_level_visibility'},{'id': '62', 'type': 'binary_operator', 'children': ['63', '65'], 'value': '*'},{'id': '63', 'type': 'list', 'children': ['64'], 'value': '[True]'},{'id': '64', 'type': 'True', 'children': []},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'v_level_indexes'},{'id': '69', 'type': 'if_statement', 'children': ['70', '73']},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '72'], 'value': 'is'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'h_level_visibility'},{'id': '72', 'type': 'None', 'children': []},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'h_level_visibility'},{'id': '77', 'type': 'binary_operator', 'children': ['78', '80'], 'value': '*'},{'id': '78', 'type': 'list', 'children': ['79'], 'value': '[True]'},{'id': '79', 'type': 'True', 'children': []},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'h_level_indexes'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '90']},{'id': '86', 'type': 'pattern_list', 'children': ['87', '88', '89']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'v_key_tuples'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'h_key_tuples'},{'id': '90', 'type': 'call', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'tabulate_body'},{'id': '92', 'type': 'argument_list', 'children': ['93', '94', '95', '96', '97', '98']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'level_keys'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'v_level_indexes'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'h_level_indexes'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'v_level_sort_keys'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'h_level_sort_keys'},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '104']},{'id': '101', 'type': 'pattern_list', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'v_key_tuples'},{'id': '104', 'type': 'call', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'strip_missing_rows'},{'id': '106', 'type': 'argument_list', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'v_key_tuples'},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '114']},{'id': '111', 'type': 'pattern_list', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'h_key_tuples'},{'id': '114', 'type': 'call', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'strip_missing_columns'},{'id': '116', 'type': 'argument_list', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'h_key_tuples'},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'assignment', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'v_key_tuples'},{'id': '122', 'type': 'call', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'strip_hidden'},{'id': '124', 'type': 'argument_list', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'v_key_tuples'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'v_level_visibility'},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'h_key_tuples'},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'strip_hidden'},{'id': '132', 'type': 'argument_list', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'h_key_tuples'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'h_level_visibility'},{'id': '135', 'type': 'return_statement', 'children': ['136']},{'id': '136', 'type': 'call', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'assemble_table'},{'id': '138', 'type': 'argument_list', 'children': ['139', '140', '141', '142', '143', '144']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'table'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'v_key_tuples'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'h_key_tuples'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'v_level_titles'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'h_level_titles'},{'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'empty'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'empty'} | def tabulate(
obj,
v_level_indexes=None,
h_level_indexes=None,
v_level_visibility=None,
h_level_visibility=None,
v_level_sort_keys=None,
h_level_sort_keys=None,
v_level_titles=None,
h_level_titles=None,
empty="",
):
level_keys = breadth_first(obj)
v_level_indexes, h_level_indexes = validate_level_indexes(
len(level_keys), v_level_indexes, h_level_indexes
)
if v_level_visibility is None:
v_level_visibility = [True] * len(v_level_indexes)
if h_level_visibility is None:
h_level_visibility = [True] * len(h_level_indexes)
table, v_key_tuples, h_key_tuples = tabulate_body(
obj, level_keys, v_level_indexes, h_level_indexes, v_level_sort_keys, h_level_sort_keys
)
table, v_key_tuples = strip_missing_rows(table, v_key_tuples)
table, h_key_tuples = strip_missing_columns(table, h_key_tuples)
v_key_tuples = strip_hidden(v_key_tuples, v_level_visibility)
h_key_tuples = strip_hidden(h_key_tuples, h_level_visibility)
return assemble_table(
table, v_key_tuples, h_key_tuples, v_level_titles, h_level_titles, empty=empty
) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_ordered_entries'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '7', 'type': 'False', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '32', '155']},{'id': '9', 'type': 'if_statement', 'children': ['10', '11', '18']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 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'type': 'argument_list', 'children': []},{'id': '32', 'type': 'if_statement', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '36', 'type': 'block', 'children': ['37', '133']},{'id': '37', 'type': 'for_statement', 'children': ['38', '39', '42']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '42', 'type': 'block', 'children': ['43', '51']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'get_entries'},{'id': '50', 'type': 'argument_list', 'children': []},{'id': '51', 'type': 'if_statement', 'children': ['52', '53', '114']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '53', 'type': 'block', 'children': ['54', '64', '76', '88', '100', '108']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'amount_list'},{'id': '57', 'type': 'list_comprehension', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'amount_of_views'},{'id': '61', 'type': 'for_in_clause', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'rating_list'},{'id': '67', 'type': 'list_comprehension', 'children': ['68', '73']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'rating'},{'id': '72', 'type': 'argument_list', 'children': []},{'id': '73', 'type': 'for_in_clause', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'entries'},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'views_per_entry'},{'id': '79', 'type': 'binary_operator', 'children': ['80', '84'], 'value': '/'},{'id': '80', 'type': 'call', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'fsum'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'amount_list'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'amount_list'},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'rating_per_entry'},{'id': '91', 'type': 'binary_operator', 'children': ['92', '96'], 'value': '/'},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'fsum'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'rating_list'},{'id': '96', 'type': 'call', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '98', 'type': 'argument_list', 'children': ['99']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'rating_list'},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '105']},{'id': '102', 'type': 'attribute', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'last_rank'},{'id': '105', 'type': 'binary_operator', 'children': ['106', '107'], 'value': '*'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'views_per_entry'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'rating_per_entry'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'call', 'children': ['110', '113']},{'id': '110', 'type': 'attribute', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'save'},{'id': '113', 'type': 'argument_list', 'children': []},{'id': '114', 'type': 'else_clause', 'children': ['115']},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'assignment', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '121', 'type': 'call', 'children': ['122', '127']},{'id': '122', 'type': 'attribute', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'exclude'},{'id': '127', 'type': 'argument_list', 'children': ['128']},{'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'pk'},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'category'},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'pk'},{'id': '133', 'type': 'expression_statement', 'children': ['134']},{'id': '134', 'type': 'assignment', 'children': ['135', '138']},{'id': '135', 'type': 'attribute', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '138', 'type': 'call', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '140', 'type': 'argument_list', 'children': ['141', '144', '152']},{'id': '141', 'type': 'attribute', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'queryset'},{'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '146', 'type': 'lambda', 'children': ['147', '149']},{'id': '147', 'type': 'lambda_parameters', 'children': ['148']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'c'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'last_rank'},{'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '154', 'type': 'True', 'children': []},{'id': '155', 'type': 'return_statement', 'children': ['156']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'queryset'} | def get_ordered_entries(self, queryset=False):
if queryset:
self.queryset = queryset
else:
self.queryset = EntryCategory.objects.all()
if self.queryset:
for category in self.queryset:
entries = category.get_entries()
if entries:
amount_list = [e.amount_of_views for e in entries]
rating_list = [e.rating() for e in entries]
views_per_entry = fsum(amount_list) / len(amount_list)
rating_per_entry = fsum(rating_list) / len(rating_list)
category.last_rank = views_per_entry * rating_per_entry
category.save()
else:
self.queryset = self.queryset.exclude(pk=category.pk)
self.queryset = sorted(self.queryset, key=lambda c: c.last_rank,
reverse=True)
return self.queryset |
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verbose=True, verbose_flatmap=None, **kwargs):
results = _parallel_progbar_launch(mapper, iterable, nprocs, starmap, flatmap, shuffle, verbose, verbose_flatmap, **kwargs)
return [x for i, x in sorted(results, key=lambda p: p[0])] |
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verbose=True, verbose_flatmap=None, max_cache=-1, **kwargs):
results = _parallel_progbar_launch(mapper, iterable, nprocs, starmap, flatmap, shuffle, verbose,
verbose_flatmap, max_cache, **kwargs)
return (x for i, x in results) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_creation_date_tags'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'domain'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'as_dicts'},{'id': '8', 'type': 'False', 'children': []},{'id': '9', 'type': 'block', 'children': ['10', '22', '41', '47']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'creation_date_tags'},{'id': '13', 'type': 'list', 'children': ['14', '18'], 'value': '[\n mementoweb_api_tags(url),\n get_whois_tags(domain),\n ]'},{'id': '14', 'type': 'call', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'mementoweb_api_tags'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'get_whois_tags'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'domain'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'creation_date_tags'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '27', 'type': 'argument_list', 'children': ['28', '33']},{'id': '28', 'type': 'call', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'sum'},{'id': '30', 'type': 'argument_list', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'creation_date_tags'},{'id': '32', 'type': 'list', 'children': [], 'value': '[]'},{'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '35', 'type': 'lambda', 'children': ['36', '38']},{'id': '36', 'type': 'lambda_parameters', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '41', 'type': 'if_statement', 'children': ['42', '44']},{'id': '42', 'type': 'not_operator', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'as_dicts'},{'id': '44', 'type': 'block', 'children': ['45']},{'id': '45', 'type': 'return_statement', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'creation_date_tags'},{'id': '47', 'type': 'return_statement', 'children': ['48']},{'id': '48', 'type': 'list_comprehension', 'children': ['49', '54']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '52', 'type': 'identifier', 'children': [], 'value': '_as_dict'},{'id': '53', 'type': 'argument_list', 'children': []},{'id': '54', 'type': 'for_in_clause', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'creation_date_tags'} | def get_creation_date_tags(url, domain, as_dicts=False):
creation_date_tags = [
mementoweb_api_tags(url),
get_whois_tags(domain),
]
creation_date_tags = sorted(
sum(creation_date_tags, []),
key=lambda x: x.date
)
if not as_dicts:
return creation_date_tags
return [
item._as_dict()
for item in creation_date_tags
] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'image_from_name'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'images'},{'id': '6', 'type': 'block', 'children': ['7', '24', '50', '79']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'prefixed_images'},{'id': '10', 'type': 'list_comprehension', 'children': ['11', '12', '15']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '12', 'type': 'for_in_clause', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'images'},{'id': '15', 'type': 'if_clause', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '22']},{'id': '17', 'type': 'attribute', 'children': ['18', '21']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'startswith'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '24', 'type': 'if_statement', 'children': ['25', '34']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'in'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '27', 'type': 'list_comprehension', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '31', 'type': 'for_in_clause', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'prefixed_images'},{'id': '34', 'type': 'block', 'children': ['35']},{'id': '35', 'type': 'return_statement', 'children': ['36']},{'id': '36', 'type': 'subscript', 'children': ['37', '48']},{'id': '37', 'type': 'list_comprehension', 'children': ['38', '39', '42']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '39', 'type': 'for_in_clause', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'prefixed_images'},{'id': '42', 'type': 'if_clause', 'children': ['43']},{'id': '43', 'type': 'comparison_operator', 'children': ['44', '47'], 'value': '=='},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '48', 'type': 'unary_operator', 'children': ['49'], 'value': '-'},{'id': '49', 'type': 'integer', 'children': [], 'value': '1'},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'assignment', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'decorated'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '55', 'type': 'argument_list', 'children': ['56']},{'id': '56', 'type': 'list_comprehension', 'children': ['57', '76']},{'id': '57', 'type': 'tuple', 'children': ['58', '75']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'call', 'children': ['62', '73']},{'id': '62', 'type': 'attribute', 'children': ['63', '72']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '67', 'type': 'argument_list', 'children': ['68', '69']},{'id': '68', 'type': 'string', 'children': [], 'value': "'\\d+'"},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '73', 'type': 'argument_list', 'children': ['74']},{'id': '74', 'type': 'integer', 'children': [], 'value': '0'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '76', 'type': 'for_in_clause', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'prefixed_images'},{'id': '79', 'type': 'return_statement', 'children': ['80']},{'id': '80', 'type': 'subscript', 'children': ['81', '88']},{'id': '81', 'type': 'list_comprehension', 'children': ['82', '85']},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '84', 'type': 'integer', 'children': [], 'value': '1'},{'id': '85', 'type': 'for_in_clause', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'decorated'},{'id': '88', 'type': 'unary_operator', 'children': ['89'], 'value': '-'},{'id': '89', 'type': 'integer', 'children': [], 'value': '1'} | def image_from_name(name, images):
prefixed_images = [i for i in images if i.name.startswith(name)]
if name in [i.name for i in prefixed_images]:
return [i for i in prefixed_images if i.name == name][-1]
decorated = sorted(
[(int(re.search('\d+', i.name).group(0)), i) for i in prefixed_images])
return [i[1] for i in decorated][-1] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'func_on_enter'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '5', 'type': 'block', 'children': ['6', '29']},{'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']},{'id': '7', 'type': 'function_name', 'children': [], 'value': 'function_after_enter_pressed'},{'id': '8', 'type': 'parameters', 'children': ['9']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'ev'},{'id': '10', 'type': 'block', 'children': ['11', '17']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'ev'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'stopPropagation'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'if_statement', 'children': ['18', '23']},{'id': '18', 'type': 'comparison_operator', 'children': ['19', '22'], 'value': '=='},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'ev'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'keyCode'},{'id': '22', 'type': 'integer', 'children': [], 'value': '13'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'ev'},{'id': '29', 'type': 'return_statement', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'function_after_enter_pressed'} | def func_on_enter(func):
def function_after_enter_pressed(ev):
ev.stopPropagation()
if ev.keyCode == 13:
func(ev)
return function_after_enter_pressed |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'prev_next_group'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'project'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '6', 'type': 'block', 'children': ['7', '23', '41', '54', '72']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '12', 'type': 'generator_expression', 'children': ['13', '14', '19']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '14', 'type': 'for_in_clause', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'project'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '19', 'type': 'if_clause', 'children': ['20']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'submissions'},{'id': '23', 'type': 'try_statement', 'children': ['24', '34']},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '34', 'type': 'except_clause', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'return_statement', 'children': ['38']},{'id': '38', 'type': 'expression_list', 'children': ['39', '40']},{'id': '39', 'type': 'None', 'children': []},{'id': '40', 'type': 'None', 'children': []},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'prev_group'},{'id': '44', 'type': 'conditional_expression', 'children': ['45', '50', '53'], 'value': 'if'},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '-'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '49', 'type': 'integer', 'children': [], 'value': '1'},{'id': '50', 'type': 'comparison_operator', 'children': ['51', '52'], 'value': '>'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '52', 'type': 'integer', 'children': [], 'value': '0'},{'id': '53', 'type': 'None', 'children': []},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'next_group'},{'id': '57', 'type': 'conditional_expression', 'children': ['58', '63', '71'], 'value': 'if'},{'id': '58', 'type': 'subscript', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '60', 'type': 'binary_operator', 'children': ['61', '62'], 'value': '+'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '62', 'type': 'integer', 'children': [], 'value': '1'},{'id': '63', 'type': 'comparison_operator', 'children': ['64', '67'], 'value': '<'},{'id': '64', 'type': 'binary_operator', 'children': ['65', '66'], 'value': '+'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '66', 'type': 'integer', 'children': [], 'value': '1'},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'groups'},{'id': '71', 'type': 'None', 'children': []},{'id': '72', 'type': 'return_statement', 'children': ['73']},{'id': '73', 'type': 'expression_list', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'prev_group'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'next_group'} | def prev_next_group(project, group):
groups = sorted(x for x in project.groups if x.submissions)
try:
index = groups.index(group)
except ValueError:
return None, None
prev_group = groups[index - 1] if index > 0 else None
next_group = groups[index + 1] if index + 1 < len(groups) else None
return prev_group, next_group |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'do_minus'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'parser'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '7', 'type': 'block', 'children': ['8', '10', '18', '22', '110', '121']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'string', 'children': [], 'value': '\'\'\'This filter sorts nodes in a flat group into "required", "default",\n and "banned" subgroups based on the presence of plus and minus nodes.\n \'\'\''},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'assignment', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'grouper'},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '16', 'type': 'identifier', 'children': [], 'value': '__class__'},{'id': '17', 'type': 'argument_list', 'children': []},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'for_statement', 'children': ['23', '24', '25']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'group'},{'id': '25', 'type': 'block', 'children': ['26']},{'id': '26', 'type': 'if_statement', 'children': ['27', '34', '60']},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '29', 'type': 'argument_list', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'Minus'},{'id': '34', 'type': 'block', 'children': ['35', '41', '53']},{'id': '35', 'type': 'if_statement', 'children': ['36', '39']},{'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': 'is'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '38', 'type': 'None', 'children': []},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'continue_statement', 'children': []},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '44', 'type': 'call', 'children': ['45', '52']},{'id': '45', 'type': 'attribute', 'children': ['46', '51']},{'id': '46', 'type': 'attribute', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'whoosh'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'qparser'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'syntax'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'NotGroup'},{'id': '52', 'type': 'argument_list', 'children': []},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'grouper'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '58', 'type': 'argument_list', 'children': ['59']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '60', 'type': 'else_clause', 'children': ['61']},{'id': '61', 'type': 'block', 'children': ['62', '85']},{'id': '62', 'type': 'if_statement', 'children': ['63', '74']},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '67', 'type': 'attribute', 'children': ['68', '73']},{'id': '68', 'type': 'attribute', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'whoosh'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'qparser'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'syntax'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'GroupNode'},{'id': '74', 'type': 'block', 'children': ['75']},{'id': '75', 'type': 'expression_statement', 'children': ['76']},{'id': '76', 'type': 'assignment', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'do_minus'},{'id': '82', 'type': 'argument_list', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'parser'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '85', 'type': 'if_statement', 'children': ['86', '89', '101']},{'id': '86', 'type': 'comparison_operator', 'children': ['87', '88'], 'value': 'is'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '88', 'type': 'None', 'children': []},{'id': '89', 'type': 'block', 'children': ['90', '97']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'call', 'children': ['92', '95']},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '100', 'type': 'None', 'children': []},{'id': '101', 'type': 'else_clause', 'children': ['102']},{'id': '102', 'type': 'block', 'children': ['103']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'call', 'children': ['105', '108']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'grouper'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '108', 'type': 'argument_list', 'children': ['109']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '110', 'type': 'if_statement', 'children': ['111', '114']},{'id': '111', 'type': 'comparison_operator', 'children': ['112', '113'], 'value': 'is'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'next_not'},{'id': '113', 'type': 'None', 'children': []},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'call', 'children': ['117', '120']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'grouper'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '120', 'type': 'argument_list', 'children': []},{'id': '121', 'type': 'return_statement', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'grouper'} | def do_minus(self, parser, group):
'''This filter sorts nodes in a flat group into "required", "default",
and "banned" subgroups based on the presence of plus and minus nodes.
'''
grouper = group.__class__()
next_not = None
for node in group:
if isinstance(node, self.Minus):
if next_not is not None:
continue
next_not = whoosh.qparser.syntax.NotGroup()
grouper.append(next_not)
else:
if isinstance(node, whoosh.qparser.syntax.GroupNode):
node = self.do_minus(parser, node)
if next_not is not None:
next_not.append(node)
next_not = None
else:
grouper.append(node)
if next_not is not None:
grouper.pop()
return grouper |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'topological_sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'dependency_pairs'},{'id': '5', 'type': 'block', 'children': ['6', '8', '15', '22', '26', '68', '80', '109', '125']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': '"Sort values subject to dependency constraints"'},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'num_heads'},{'id': '11', 'type': 'call', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'defaultdict'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'defaultdict'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'heads'},{'id': '25', 'type': 'list', 'children': [], 'value': '[]'},{'id': '26', 'type': 'for_statement', 'children': ['27', '30', '31']},{'id': '27', 'type': 'pattern_list', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'dependency_pairs'},{'id': '31', 'type': 'block', 'children': ['32', '38']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'augmented_assignment', 'children': ['34', '37'], 'value': '+='},{'id': '34', 'type': 'subscript', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'num_heads'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '37', 'type': 'integer', 'children': [], 'value': '1'},{'id': '38', 'type': 'if_statement', 'children': ['39', '42', '52']},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'in'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '42', 'type': 'block', 'children': ['43']},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'call', 'children': ['45', '50']},{'id': '45', 'type': 'attribute', 'children': ['46', '49']},{'id': '46', 'type': 'subscript', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '52', 'type': 'else_clause', 'children': ['53']},{'id': '53', 'type': 'block', 'children': ['54', '61']},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '59']},{'id': '56', 'type': 'subscript', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '59', 'type': 'list', 'children': ['60'], 'value': '[t]'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '61', 'type': 'expression_statement', 'children': ['62']},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'heads'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '68', 'type': 'expression_statement', 'children': ['69']},{'id': '69', 'type': 'assignment', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'ordered'},{'id': '71', 'type': 'list_comprehension', 'children': ['72', '73', '76']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '73', 'type': 'for_in_clause', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'heads'},{'id': '76', 'type': 'if_clause', 'children': ['77']},{'id': '77', 'type': 'comparison_operator', 'children': ['78', '79'], 'value': 'not'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'num_heads'},{'id': '80', 'type': 'for_statement', 'children': ['81', '82', '83']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'ordered'},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'for_statement', 'children': ['85', '86', '89']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '86', 'type': 'subscript', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'tails'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'h'},{'id': '89', 'type': 'block', 'children': ['90', '96']},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'augmented_assignment', 'children': ['92', '95'], 'value': '-='},{'id': '92', 'type': 'subscript', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'num_heads'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '95', 'type': 'integer', 'children': [], 'value': '1'},{'id': '96', 'type': 'if_statement', 'children': ['97', '101']},{'id': '97', 'type': 'not_operator', 'children': ['98']},{'id': '98', 'type': 'subscript', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'num_heads'},{'id': '100', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '101', 'type': 'block', 'children': ['102']},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'ordered'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'cyclic'},{'id': '112', 'type': 'list_comprehension', 'children': ['113', '114', '123']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '114', 'type': 'for_in_clause', 'children': ['115', '118']},{'id': '115', 'type': 'pattern_list', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'heads'},{'id': '118', 'type': 'call', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'num_heads'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '122', 'type': 'argument_list', 'children': []},{'id': '123', 'type': 'if_clause', 'children': ['124']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'heads'},{'id': '125', 'type': 'return_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'Results'},{'id': '128', 'type': 'argument_list', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'ordered'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'cyclic'} | def topological_sort(dependency_pairs):
"Sort values subject to dependency constraints"
num_heads = defaultdict(int)
tails = defaultdict(list)
heads = []
for h, t in dependency_pairs:
num_heads[t] += 1
if h in tails:
tails[h].append(t)
else:
tails[h] = [t]
heads.append(h)
ordered = [h for h in heads if h not in num_heads]
for h in ordered:
for t in tails[h]:
num_heads[t] -= 1
if not num_heads[t]:
ordered.append(t)
cyclic = [n for n, heads in num_heads.items() if heads]
return Results(ordered, cyclic) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'multisorted'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '7', 'type': 'block', 'children': ['8', '23', '47']},{'id': '8', 'type': 'if_statement', 'children': ['9', '15']},{'id': '9', 'type': 'comparison_operator', 'children': ['10', '14'], 'value': '=='},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '14', 'type': 'integer', 'children': [], 'value': '0'},{'id': '15', 'type': 'block', 'children': ['16']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '19', 'type': 'list', 'children': ['20'], 'value': '[asc()]'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'asc'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'for_statement', 'children': ['24', '25', '29']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'reversed'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '33', 'type': 'call', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '35', 'type': 'argument_list', 'children': ['36', '37', '42']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '47', 'type': 'return_statement', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'items'} | def multisorted(items, *keys):
if len(keys) == 0:
keys = [asc()]
for key in reversed(keys):
items = sorted(items, key=key.func, reverse=key.reverse)
return items |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'tuplesorted'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '7', 'type': 'block', 'children': ['8', '47']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'tuple_keys'},{'id': '11', 'type': 'list_comprehension', 'children': ['12', '39']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'Key'},{'id': '14', 'type': 'argument_list', 'children': ['15', '34']},{'id': '15', 'type': 'keyword_argument', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '17', 'type': 'lambda', 'children': ['18', '26']},{'id': '18', 'type': 'lambda_parameters', 'children': ['19', '20', '23']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '20', 'type': 'default_parameter', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '23', 'type': 'default_parameter', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'func'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'subscript', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 't'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '36', 'type': 'attribute', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '39', 'type': 'for_in_clause', 'children': ['40', '43']},{'id': '40', 'type': 'pattern_list', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '47', 'type': 'return_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'multisorted'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '52', 'type': 'list_splat', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'tuple_keys'} | def tuplesorted(items, *keys):
tuple_keys = [
Key(func=lambda t, i=index, k=key: k.func(t[i]), reverse=key.reverse)
for index, key in enumerate(keys)
]
return multisorted(items, *tuple_keys) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_formats'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '8', 'type': 'tuple', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '22', '42', '56']},{'id': '13', 'type': 'if_statement', 'children': ['14', '17']},{'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': '=='},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '21', 'type': 'list', 'children': [], 'value': '[]'},{'id': '22', 'type': 'for_statement', 'children': ['23', '24', '27']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'children'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'list_formats'},{'id': '33', 'type': 'argument_list', 'children': ['34', '35', '41']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '35', 'type': 'binary_operator', 'children': ['36', '37'], 'value': '+'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '37', 'type': 'tuple', 'children': ['38']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'child'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'boolean_operator', 'children': ['44', '45'], 'value': 'and'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '45', 'type': 'call', 'children': ['46', '49']},{'id': '46', 'type': 'attribute', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'formats'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'call', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'string', 'children': [], 'value': '"."'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '56', 'type': 'return_statement', 'children': ['57']},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'formats'} | def list_formats(self, node, path=(), formats=None):
if formats == None:
formats = []
for child in node.children:
self.list_formats(child, path + (child.name,), formats)
path and formats.append(".".join(path))
return sorted(formats) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'ls'},{'id': '3', 'type': 'parameters', 'children': ['4', '7', '10']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '6', 'type': 'string', 'children': [], 'value': '"."'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'abspaths'},{'id': '9', 'type': 'False', 'children': []},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '12', 'type': 'False', 'children': []},{'id': '13', 'type': 'block', 'children': ['14', '57']},{'id': '14', 'type': 'function_definition', 'children': ['15', '16', '18']},{'id': '15', 'type': 'function_name', 'children': [], 'value': '_expand_subdirs'},{'id': '16', 'type': 'parameters', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'if_statement', 'children': ['20', '28', '52']},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'isdir'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'return_statement', 'children': ['30']},{'id': '30', 'type': 'binary_operator', 'children': ['31', '33'], 'value': '+'},{'id': '31', 'type': 'list', 'children': ['32'], 'value': '[file]'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '33', 'type': 'list_comprehension', 'children': ['34', '39']},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '36', 'type': 'argument_list', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '39', 'type': 'for_in_clause', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'ls'},{'id': '43', 'type': 'argument_list', 'children': ['44', '49']},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '51', 'type': 'True', 'children': []},{'id': '52', 'type': 'else_clause', 'children': ['53']},{'id': '53', 'type': 'block', 'children': ['54']},{'id': '54', 'type': 'return_statement', 'children': ['55']},{'id': '55', 'type': 'list', 'children': ['56'], 'value': '[file]'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '57', 'type': 'if_statement', 'children': ['58', '62', '76', '109', '139']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'isfile'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '62', 'type': 'block', 'children': ['63']},{'id': '63', 'type': 'return_statement', 'children': ['64']},{'id': '64', 'type': 'conditional_expression', 'children': ['65', '70', '71'], 'value': 'if'},{'id': '65', 'type': 'list', 'children': ['66'], 'value': '[abspath(root)]'},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'abspaths'},{'id': '71', 'type': 'list', 'children': ['72'], 'value': '[basename(root)]'},{'id': '72', 'type': 'call', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'basename'},{'id': '74', 'type': 'argument_list', 'children': ['75']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '76', 'type': 'elif_clause', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'abspaths'},{'id': '78', 'type': 'block', 'children': ['79', '92', '99']},{'id': '79', 'type': 'expression_statement', 'children': ['80']},{'id': '80', 'type': 'assignment', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'relpaths'},{'id': '82', 'type': 'call', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'ls'},{'id': '84', 'type': 'argument_list', 'children': ['85', '86', '89']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '89', 'type': 'keyword_argument', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'abspaths'},{'id': '91', 'type': 'False', 'children': []},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'assignment', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '95', 'type': 'call', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '99', 'type': 'return_statement', 'children': ['100']},{'id': '100', 'type': 'list_comprehension', 'children': ['101', '106']},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '103', 'type': 'argument_list', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'base'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'relpath'},{'id': '106', 'type': 'for_in_clause', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'relpath'},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'relpaths'},{'id': '109', 'type': 'elif_clause', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '111', 'type': 'block', 'children': ['112', '125']},{'id': '112', 'type': 'expression_statement', 'children': ['113']},{'id': '113', 'type': 'assignment', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'paths'},{'id': '115', 'type': 'call', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'ls'},{'id': '117', 'type': 'argument_list', 'children': ['118', '119', '122']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'root'},{'id': '119', 'type': 'keyword_argument', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'abspaths'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'abspaths'},{'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'recursive'},{'id': '124', 'type': 'False', 'children': []},{'id': '125', 'type': 'return_statement', 'children': ['126']},{'id': '126', 'type': 'call', 'children': ['127', '130']},{'id': '127', 'type': 'attribute', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'labtypes'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'flatten'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'list_comprehension', 'children': ['132', '136']},{'id': '132', 'type': 'call', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': '_expand_subdirs'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '136', 'type': 'for_in_clause', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'paths'},{'id': '139', 'type': 'else_clause', 'children': ['140']},{'id': '140', 'type': 'block', 'children': ['141']},{'id': '141', 'type': 'return_statement', 'children': ['142']},{'id': '142', 'type': 'call', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '144', 'type': 'argument_list', 'children': ['145']},{'id': '145', 'type': 'call', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '147', 'type': 'argument_list', 'children': ['148']},{'id': '148', 'type': 'call', 'children': ['149', '152']},{'id': '149', 'type': 'attribute', 'children': ['150', '151']},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'os'},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'listdir'},{'id': '152', 'type': 'argument_list', 'children': ['153']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'root'} | def ls(root=".", abspaths=False, recursive=False):
def _expand_subdirs(file):
if isdir(path(root, file)):
return [file] + [path(file, x) for x in
ls(path(root, file), recursive=True)]
else:
return [file]
if isfile(root):
return [abspath(root)] if abspaths else [basename(root)]
elif abspaths:
relpaths = ls(root, recursive=recursive, abspaths=False)
base = abspath(root)
return [path(base, relpath) for relpath in relpaths]
elif recursive:
paths = ls(root, abspaths=abspaths, recursive=False)
return labtypes.flatten([_expand_subdirs(file) for file in paths])
else:
return list(sorted(os.listdir(root))) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'list'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '7', 'type': 'integer', 'children': [], 'value': '0'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '10', 'type': 'integer', 'children': [], 'value': '0'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'dictionary_splat_pattern', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'try_statement', 'children': ['21', '55']},{'id': '21', 'type': 'block', 'children': ['22', '44']},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': '_cursor'},{'id': '29', 'type': 'argument_list', 'children': ['30', '33', '36', '39', '42']},{'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '42', 'type': 'dictionary_splat', 'children': ['43']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '44', 'type': 'return_statement', 'children': ['45']},{'id': '45', 'type': 'expression_list', 'children': ['46', '50']},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '48', 'type': 'argument_list', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '50', 'type': 'call', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '54', 'type': 'argument_list', 'children': []},{'id': '55', 'type': 'except_clause', 'children': ['56', '64']},{'id': '56', 'type': 'as_pattern', 'children': ['57', '62']},{'id': '57', 'type': 'attribute', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'pymongo'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'errors'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'OperationFailure'},{'id': '62', 'type': 'as_pattern_target', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '64', 'type': 'block', 'children': ['65', '84', '91', '102', '110', '132']},{'id': '65', 'type': 'try_statement', 'children': ['66', '77']},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'subscript', 'children': ['69', '76']},{'id': '69', 'type': 'subscript', 'children': ['70', '75']},{'id': '70', 'type': 'subscript', 'children': ['71', '74']},{'id': '71', 'type': 'subscript', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '73', 'type': 'string', 'children': [], 'value': "'$or'"},{'id': '74', 'type': 'integer', 'children': [], 'value': '0'},{'id': '75', 'type': 'string', 'children': [], 'value': "'$text'"},{'id': '76', 'type': 'string', 'children': [], 'value': "'$search'"},{'id': '77', 'type': 'except_clause', 'children': ['78', '81']},{'id': '78', 'type': 'tuple', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'IndexError'},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'raise_statement', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'exc'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'LOG'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'string', 'children': [], 'value': '"Falling back to hard-coded mongo v2.4 search behavior"'},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '94', 'type': 'call', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'search_alternative'},{'id': '98', 'type': 'argument_list', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '100', 'type': 'dictionary_splat', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'call', 'children': ['104', '107']},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'LOG'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '107', 'type': 'argument_list', 'children': ['108', '109']},{'id': '108', 'type': 'string', 'children': [], 'value': '"Modified kwargs: %s"'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '110', 'type': 'expression_statement', 'children': ['111']},{'id': '111', 'type': 'assignment', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '113', 'type': 'call', 'children': ['114', '117']},{'id': '114', 'type': 'attribute', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '116', 'type': 'identifier', 'children': [], 'value': '_cursor'},{'id': '117', 'type': 'argument_list', 'children': ['118', '121', '124', '127', '130']},{'id': '118', 'type': 'keyword_argument', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '121', 'type': 'keyword_argument', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '124', 'type': 'keyword_argument', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '130', 'type': 'dictionary_splat', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '132', 'type': 'return_statement', 'children': ['133']},{'id': '133', 'type': 'expression_list', 'children': ['134', '138']},{'id': '134', 'type': 'call', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '138', 'type': 'call', 'children': ['139', '142']},{'id': '139', 'type': 'attribute', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'cursor'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'count'},{'id': '142', 'type': 'argument_list', 'children': []} | def list(self, offset=0, limit=0, fields=None, sort=None, **kwargs):
try:
cursor = self._cursor(offset=offset, limit=limit, fields=fields,
sort=sort, **kwargs)
return list(cursor), cursor.count()
except pymongo.errors.OperationFailure as exc:
try:
kwargs['$or'][0]['$text']['$search']
except (KeyError, IndexError):
raise exc
LOG.warn("Falling back to hard-coded mongo v2.4 search behavior")
kwargs = self.search_alternative(limit, **kwargs)
LOG.debug("Modified kwargs: %s", kwargs)
cursor = self._cursor(offset=offset, limit=limit, fields=fields,
sort=sort, **kwargs)
return list(cursor), cursor.count() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_cursor'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '7', 'type': 'integer', 'children': [], 'value': '0'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '10', 'type': 'integer', 'children': [], 'value': '0'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '16', 'type': 'None', 'children': []},{'id': '17', 'type': 'dictionary_splat_pattern', 'children': ['18']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '19', 'type': 'block', 'children': ['20', '27', '43', '55', '114', '130']},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '23', 'type': 'dictionary', 'children': ['24']},{'id': '24', 'type': 'pair', 'children': ['25', '26']},{'id': '25', 'type': 'string', 'children': [], 'value': "'_id'"},{'id': '26', 'type': 'False', 'children': []},{'id': '27', 'type': 'if_statement', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'update'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'dictionary_comprehension', 'children': ['37', '40']},{'id': '37', 'type': 'pair', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '39', 'type': 'True', 'children': []},{'id': '40', 'type': 'for_in_clause', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '46', 'type': 'call', 'children': ['47', '52']},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '50', 'type': 'identifier', 'children': [], 'value': '_collection'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'find'},{'id': '52', 'type': 'argument_list', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'projection'},{'id': '55', 'type': 'if_statement', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '57', 'type': 'block', 'children': ['58', '65', '107']},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'sort_pairs'},{'id': '61', 'type': 'subscript', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '63', 'type': 'slice', 'children': ['64']},{'id': '64', 'type': 'colon', 'children': []},{'id': '65', 'type': 'for_statement', 'children': ['66', '69', '73']},{'id': '66', 'type': 'pattern_list', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '69', 'type': 'call', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '73', 'type': 'block', 'children': ['74']},{'id': '74', 'type': 'if_statement', 'children': ['75', '80', '95']},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '79'], 'value': '=='},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '78', 'type': 'integer', 'children': [], 'value': '0'},{'id': '79', 'type': 'string', 'children': [], 'value': '"-"'},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '86']},{'id': '83', 'type': 'subscript', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'sort_pairs'},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '86', 'type': 'tuple', 'children': ['87', '92']},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '89', 'type': 'slice', 'children': ['90', '91']},{'id': '90', 'type': 'integer', 'children': [], 'value': '1'},{'id': '91', 'type': 'colon', 'children': []},{'id': '92', 'type': 'attribute', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'pymongo'},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'DESCENDING'},{'id': '95', 'type': 'else_clause', 'children': ['96']},{'id': '96', 'type': 'block', 'children': ['97']},{'id': '97', 'type': 'expression_statement', 'children': ['98']},{'id': '98', 'type': 'assignment', 'children': ['99', '102']},{'id': '99', 'type': 'subscript', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'sort_pairs'},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '102', 'type': 'tuple', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '104', 'type': 'attribute', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'pymongo'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'ASCENDING'},{'id': '107', 'type': 'expression_statement', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'sort_pairs'},{'id': '114', 'type': 'expression_statement', 'children': ['115']},{'id': '115', 'type': 'call', 'children': ['116', '126']},{'id': '116', 'type': 'attribute', 'children': ['117', '125']},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'results'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'skip'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'boolean_operator', 'children': ['123', '124'], 'value': 'or'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'offset'},{'id': '124', 'type': 'integer', 'children': [], 'value': '0'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'boolean_operator', 'children': ['128', '129'], 'value': 'or'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '129', 'type': 'integer', 'children': [], 'value': '0'},{'id': '130', 'type': 'return_statement', 'children': ['131']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'results'} | def _cursor(self, offset=0, limit=0, fields=None, sort=None, **kwargs):
projection = {'_id': False}
if fields:
projection.update({field: True for field in fields})
results = self._collection.find(kwargs, projection)
if sort:
sort_pairs = sort[:]
for index, field in enumerate(sort):
if field[0] == "-":
sort_pairs[index] = (field[1:], pymongo.DESCENDING)
else:
sort_pairs[index] = (field, pymongo.ASCENDING)
results.sort(sort_pairs)
results.skip(offset or 0).limit(limit or 0)
return results |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'insert'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'low_value'},{'id': '7', 'type': 'block', 'children': ['8']},{'id': '8', 'type': 'return_statement', 'children': ['9']},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'c_void_p'},{'id': '11', 'type': 'argument_list', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'lib'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'zlistx_insert'},{'id': '16', 'type': 'argument_list', 'children': ['17', '20', '21']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_as_parameter_'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'low_value'} | def insert(self, item, low_value):
return c_void_p(lib.zlistx_insert(self._as_parameter_, item, low_value)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'reorder'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'handle'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'low_value'},{'id': '7', 'type': 'block', 'children': ['8']},{'id': '8', 'type': 'return_statement', 'children': ['9']},{'id': '9', 'type': 'call', 'children': ['10', '13']},{'id': '10', 'type': 'attribute', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'lib'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'zlistx_reorder'},{'id': '13', 'type': 'argument_list', 'children': ['14', '17', '18']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'identifier', 'children': [], 'value': '_as_parameter_'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'handle'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'low_value'} | def reorder(self, handle, low_value):
return lib.zlistx_reorder(self._as_parameter_, handle, low_value) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'process_params'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'standard_params'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'STANDARD_QUERY_PARAMS'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'filter_fields'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'defaults'},{'id': '13', 'type': 'None', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '23', '47', '74', '80', '148', '195', '241']},{'id': '15', 'type': 'if_statement', 'children': ['16', '18']},{'id': '16', 'type': 'not_operator', 'children': ['17']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'filter_fields'},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'filter_fields'},{'id': '22', 'type': 'list', 'children': [], 'value': '[]'},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'unfilterable'},{'id': '26', 'type': '()', 'children': ['27']},{'id': '27', 'type': 'binary_operator', 'children': ['28', '43'], 'value': '-'},{'id': '28', 'type': 'binary_operator', 'children': ['29', '39'], 'value': '-'},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '31', 'type': 'argument_list', 'children': ['32']},{'id': '32', 'type': 'call', 'children': ['33', '38']},{'id': '33', 'type': 'attribute', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '38', 'type': 'argument_list', 'children': []},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'filter_fields'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'standard_params'},{'id': '47', 'type': 'if_statement', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'unfilterable'},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'expression_statement', 'children': ['51']},{'id': '51', 'type': 'call', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'bottle'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'abort'},{'id': '55', 'type': 'argument_list', 'children': ['56', '57']},{'id': '56', 'type': 'integer', 'children': [], 'value': '400'},{'id': '57', 'type': 'binary_operator', 'children': ['58', '61'], 'value': '%'},{'id': '58', 'type': 'concatenated_string', 'children': ['59', '60']},{'id': '59', 'type': 'string', 'children': [], 'value': '"The following query params were invalid: %s. "'},{'id': '60', 'type': 'string', 'children': [], 'value': '"Try one (or more) of %s."'},{'id': '61', 'type': 'tuple', 'children': ['62', '68']},{'id': '62', 'type': 'call', 'children': ['63', '66']},{'id': '63', 'type': 'attribute', 'children': ['64', '65']},{'id': '64', 'type': 'string', 'children': [], 'value': '", "'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '66', 'type': 'argument_list', 'children': ['67']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'unfilterable'},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'string', 'children': [], 'value': '", "'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'filter_fields'},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'query_fields'},{'id': '77', 'type': 'boolean_operator', 'children': ['78', '79'], 'value': 'or'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'defaults'},{'id': '79', 'type': 'dictionary', 'children': []},{'id': '80', 'type': 'for_statement', 'children': ['81', '82', '85']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '82', 'type': 'attribute', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '85', 'type': 'block', 'children': ['86']},{'id': '86', 'type': 'if_statement', 'children': ['87', '90']},{'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': 'in'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'filter_fields'},{'id': '90', 'type': 'block', 'children': ['91', '102', '124']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'assignment', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '94', 'type': 'call', 'children': ['95', '100']},{'id': '95', 'type': 'attribute', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'getall'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '105', 'type': 'call', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'call', 'children': ['109', '112']},{'id': '109', 'type': 'attribute', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'list_splat', 'children': ['114']},{'id': '114', 'type': 'generator_expression', 'children': ['115', '121']},{'id': '115', 'type': 'call', 'children': ['116', '119']},{'id': '116', 'type': 'attribute', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '119', 'type': 'argument_list', 'children': ['120']},{'id': '120', 'type': 'string', 'children': [], 'value': "','"},{'id': '121', 'type': 'for_in_clause', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '124', 'type': 'if_statement', 'children': ['125', '131', '138']},{'id': '125', 'type': 'comparison_operator', 'children': ['126', '130'], 'value': '>'},{'id': '126', 'type': 'call', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '128', 'type': 'argument_list', 'children': ['129']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '130', 'type': 'integer', 'children': [], 'value': '1'},{'id': '131', 'type': 'block', 'children': ['132']},{'id': '132', 'type': 'expression_statement', 'children': ['133']},{'id': '133', 'type': 'assignment', 'children': ['134', '137']},{'id': '134', 'type': 'subscript', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'query_fields'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '138', 'type': 'else_clause', 'children': ['139']},{'id': '139', 'type': 'block', 'children': ['140']},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '145']},{'id': '142', 'type': 'subscript', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'query_fields'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '145', 'type': 'subscript', 'children': ['146', '147']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'matches'},{'id': '147', 'type': 'integer', 'children': [], 'value': '0'},{'id': '148', 'type': 'if_statement', 'children': ['149', '154']},{'id': '149', 'type': 'comparison_operator', 'children': ['150', '151'], 'value': 'in'},{'id': '150', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '154', 'type': 'block', 'children': ['155', '166', '189']},{'id': '155', 'type': 'expression_statement', 'children': ['156']},{'id': '156', 'type': 'assignment', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '158', 'type': 'call', 'children': ['159', '164']},{'id': '159', 'type': 'attribute', 'children': ['160', '163']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'getall'},{'id': '164', 'type': 'argument_list', 'children': ['165']},{'id': '165', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'call', 'children': ['173', '176']},{'id': '173', 'type': 'attribute', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '176', 'type': 'argument_list', 'children': ['177']},{'id': '177', 'type': 'list_splat', 'children': ['178']},{'id': '178', 'type': 'generator_expression', 'children': ['179', '186']},{'id': '179', 'type': 'call', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'comma_separated_strings'},{'id': '181', 'type': 'argument_list', 'children': ['182']},{'id': '182', 'type': 'call', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '184', 'type': 'argument_list', 'children': ['185']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '186', 'type': 'for_in_clause', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '188', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'assignment', 'children': ['191', '194']},{'id': '191', 'type': 'subscript', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'query_fields'},{'id': '193', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '195', 'type': 'if_statement', 'children': ['196', '201']},{'id': '196', 'type': 'comparison_operator', 'children': ['197', '198'], 'value': 'in'},{'id': '197', 'type': 'string', 'children': [], 'value': "'q'"},{'id': '198', 'type': 'attribute', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '201', 'type': 'block', 'children': ['202', '213', '235']},{'id': '202', 'type': 'expression_statement', 'children': ['203']},{'id': '203', 'type': 'assignment', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '205', 'type': 'call', 'children': ['206', '211']},{'id': '206', 'type': 'attribute', 'children': ['207', '210']},{'id': '207', 'type': 'attribute', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'request'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'getall'},{'id': '211', 'type': 'argument_list', 'children': ['212']},{'id': '212', 'type': 'string', 'children': [], 'value': "'q'"},{'id': '213', 'type': 'expression_statement', 'children': ['214']},{'id': '214', 'type': 'assignment', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '216', 'type': 'call', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '218', 'type': 'argument_list', 'children': ['219']},{'id': '219', 'type': 'call', 'children': ['220', '223']},{'id': '220', 'type': 'attribute', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '223', 'type': 'argument_list', 'children': ['224']},{'id': '224', 'type': 'list_splat', 'children': ['225']},{'id': '225', 'type': 'generator_expression', 'children': ['226', '230', '233']},{'id': '226', 'type': 'call', 'children': ['227', '228']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'comma_separated_strings'},{'id': '228', 'type': 'argument_list', 'children': ['229']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '230', 'type': 'for_in_clause', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '233', 'type': 'if_clause', 'children': ['234']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '235', 'type': 'expression_statement', 'children': ['236']},{'id': '236', 'type': 'assignment', 'children': ['237', '240']},{'id': '237', 'type': 'subscript', 'children': ['238', '239']},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'query_fields'},{'id': '239', 'type': 'string', 'children': [], 'value': "'q'"},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '241', 'type': 'return_statement', 'children': ['242']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'query_fields'} | def process_params(request, standard_params=STANDARD_QUERY_PARAMS,
filter_fields=None, defaults=None):
if not filter_fields:
filter_fields = []
unfilterable = (set(request.query.keys()) - set(filter_fields) -
set(standard_params))
if unfilterable:
bottle.abort(400,
"The following query params were invalid: %s. "
"Try one (or more) of %s." %
(", ".join(unfilterable),
", ".join(filter_fields)))
query_fields = defaults or {}
for key in request.query:
if key in filter_fields:
matches = request.query.getall(key)
matches = list(itertools.chain(*(k.split(',') for k in matches)))
if len(matches) > 1:
query_fields[key] = matches
else:
query_fields[key] = matches[0]
if 'sort' in request.query:
sort = request.query.getall('sort')
sort = list(itertools.chain(*(
comma_separated_strings(str(k)) for k in sort)))
query_fields['sort'] = sort
if 'q' in request.query:
search = request.query.getall('q')
search = list(itertools.chain(*(
comma_separated_strings(k) for k in search
if k)))
query_fields['q'] = search
return query_fields |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_weave_dohist'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'binsize'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'hist'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'rev'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'dorev'},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '14', 'type': 'integer', 'children': [], 'value': '0'},{'id': '15', 'type': 'block', 'children': ['16', '29', '59']},{'id': '16', 'type': 'if_statement', 'children': ['17', '18', '23']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'dorev'},{'id': '18', 'type': 'block', 'children': ['19']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'dorev'},{'id': '22', 'type': 'integer', 'children': [], 'value': '1'},{'id': '23', 'type': 'else_clause', 'children': ['24']},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'dorev'},{'id': '28', 'type': 'integer', 'children': [], 'value': '0'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '32', 'type': 'call', 'children': ['33', '38']},{'id': '33', 'type': 'attribute', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'weave'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'inline'},{'id': '38', 'type': 'argument_list', 'children': ['39', '40', '47', '56']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'code'},{'id': '40', 'type': 'list', 'children': ['41', '42', '43', '44', '45', '46'], 'value': "['data','s','binsize','hist','rev','dorev']"},{'id': '41', 'type': 'string', 'children': [], 'value': "'data'"},{'id': '42', 'type': 'string', 'children': [], 'value': "'s'"},{'id': '43', 'type': 'string', 'children': [], 'value': "'binsize'"},{'id': '44', 'type': 'string', 'children': [], 'value': "'hist'"},{'id': '45', 'type': 'string', 'children': [], 'value': "'rev'"},{'id': '46', 'type': 'string', 'children': [], 'value': "'dorev'"},{'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'type_converters'},{'id': '49', 'type': 'attribute', 'children': ['50', '55']},{'id': '50', 'type': 'attribute', 'children': ['51', '54']},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'scipy'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'weave'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'converters'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'blitz'},{'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'verbose'},{'id': '59', 'type': 'return_statement', 'children': []} | def _weave_dohist(data, s, binsize, hist, rev, dorev=False, verbose=0):
if dorev:
dorev=1
else:
dorev=0
code =
scipy.weave.inline(code, ['data','s','binsize','hist','rev','dorev'],
type_converters = scipy.weave.converters.blitz, verbose=verbose)
return |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'loose_search'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'asset_manager_id'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '8', 'type': 'string', 'children': [], 'value': "''"},{'id': '9', 'type': 'dictionary_splat_pattern', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '11', 'type': 'block', 'children': ['12', '22', '38', '45', '90', '104']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '19']},{'id': '14', 'type': 'attribute', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '19', 'type': 'argument_list', 'children': ['20', '21']},{'id': '20', 'type': 'string', 'children': [], 'value': "'Asset Search - Asset Manager: %s'"},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'asset_manager_id'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'string', 'children': [], 'value': "'{endpoint}/assets/search/{asset_manager_id}'"},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '29', 'type': 'argument_list', 'children': ['30', '33']},{'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'asset_manager_id'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'asset_manager_id'},{'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'endpoint'},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'endpoint'},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '41', 'type': 'dictionary', 'children': ['42']},{'id': '42', 'type': 'pair', 'children': ['43', '44']},{'id': '43', 'type': 'string', 'children': [], 'value': "'query'"},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '45', 'type': 'for_statement', 'children': ['46', '49', '54']},{'id': '46', 'type': 'pattern_list', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '53', 'type': 'argument_list', 'children': []},{'id': '54', 'type': 'block', 'children': ['55', '84']},{'id': '55', 'type': 'if_statement', 'children': ['56', '68']},{'id': '56', 'type': 'boolean_operator', 'children': ['57', '63'], 'value': 'and'},{'id': '57', 'type': 'not_operator', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '60', 'type': 'argument_list', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'Iterable'},{'id': '68', 'type': 'block', 'children': ['69']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'string', 'children': [], 'value': "','"},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '76', 'type': 'generator_expression', 'children': ['77', '81']},{'id': '77', 'type': 'call', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '79', 'type': 'argument_list', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '81', 'type': 'for_in_clause', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '89']},{'id': '86', 'type': 'subscript', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '93', 'type': 'call', 'children': ['94', '99']},{'id': '94', 'type': 'attribute', 'children': ['95', '98']},{'id': '95', 'type': 'attribute', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'session'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '99', 'type': 'argument_list', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '101', 'type': 'keyword_argument', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'params'},{'id': '104', 'type': 'if_statement', 'children': ['105', '108', '149']},{'id': '105', 'type': 'attribute', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'ok'},{'id': '108', 'type': 'block', 'children': ['109', '117', '134', '147']},{'id': '109', 'type': 'expression_statement', 'children': ['110']},{'id': '110', 'type': 'assignment', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '112', 'type': 'call', 'children': ['113', '116']},{'id': '113', 'type': 'attribute', 'children': ['114', '115']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'json'},{'id': '116', 'type': 'argument_list', 'children': []},{'id': '117', 'type': 'expression_statement', 'children': ['118']},{'id': '118', 'type': 'assignment', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'assets'},{'id': '120', 'type': 'list_comprehension', 'children': ['121', '125']},{'id': '121', 'type': 'call', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'json_to_asset'},{'id': '123', 'type': 'argument_list', 'children': ['124']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'json_asset'},{'id': '125', 'type': 'for_in_clause', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'json_asset'},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '131', 'type': 'argument_list', 'children': ['132', '133']},{'id': '132', 'type': 'string', 'children': [], 'value': "'hits'"},{'id': '133', 'type': 'list', 'children': [], 'value': '[]'},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'call', 'children': ['136', '141']},{'id': '136', 'type': 'attribute', 'children': ['137', '140']},{'id': '137', 'type': 'attribute', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '141', 'type': 'argument_list', 'children': ['142', '143']},{'id': '142', 'type': 'string', 'children': [], 'value': "'Returned %s Assets.'"},{'id': '143', 'type': 'call', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'assets'},{'id': '147', 'type': 'return_statement', 'children': ['148']},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'assets'},{'id': '149', 'type': 'else_clause', 'children': ['150']},{'id': '150', 'type': 'block', 'children': ['151', '162']},{'id': '151', 'type': 'expression_statement', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '158']},{'id': '153', 'type': 'attribute', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'error'},{'id': '158', 'type': 'argument_list', 'children': ['159']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'text'},{'id': '162', 'type': 'expression_statement', 'children': ['163']},{'id': '163', 'type': 'call', 'children': ['164', '167']},{'id': '164', 'type': 'attribute', 'children': ['165', '166']},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'response'},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'raise_for_status'},{'id': '167', 'type': 'argument_list', 'children': []} | def loose_search(self, asset_manager_id, query='', **kwargs):
self.logger.info('Asset Search - Asset Manager: %s', asset_manager_id)
url = '{endpoint}/assets/search/{asset_manager_id}'.format(
asset_manager_id=asset_manager_id,
endpoint=self.endpoint,
)
params = {'query': query}
for k, v in kwargs.items():
if not isinstance(v, str) and isinstance(v, Iterable):
v = ','.join(str(i) for i in v)
params[k] = v
response = self.session.get(url, params=params)
if response.ok:
data = response.json()
assets = [json_to_asset(json_asset) for json_asset in data.get('hits', [])]
self.logger.info('Returned %s Assets.', len(assets))
return assets
else:
self.logger.error(response.text)
response.raise_for_status() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'natural_sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '5', 'type': 'block', 'children': ['6', '13', '30']},{'id': '6', 'type': 'if_statement', 'children': ['7', '10']},{'id': '7', 'type': 'comparison_operator', 'children': ['8', '9'], 'value': 'is'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'item'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11']},{'id': '11', 'type': 'return_statement', 'children': ['12']},{'id': '12', 'type': 'integer', 'children': [], 'value': '0'},{'id': '13', 'type': 'function_definition', 'children': ['14', '15', '17']},{'id': '14', 'type': 'function_name', 'children': [], 'value': 'try_int'},{'id': '15', 'type': 'parameters', 'children': ['16']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'try_statement', 'children': ['19', '25']},{'id': '19', 'type': 'block', 'children': ['20']},{'id': '20', 'type': 'return_statement', 'children': ['21']},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '23', 'type': 'argument_list', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '25', 'type': 'except_clause', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'return_statement', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '30', 'type': 'return_statement', 'children': ['31']},{'id': '31', 'type': 'call', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '33', 'type': 'argument_list', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'map'},{'id': '36', 'type': 'argument_list', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'try_int'},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'findall'},{'id': '42', 'type': 'argument_list', 'children': ['43', '44']},{'id': '43', 'type': 'string', 'children': [], 'value': "r'(\\d+|\\D+)'"},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'item'} | def natural_sort(item):
if item is None:
return 0
def try_int(s):
try:
return int(s)
except ValueError:
return s
return tuple(map(try_int, re.findall(r'(\d+|\D+)', item))) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_html_attrs'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '6', 'type': 'None', 'children': []},{'id': '7', 'type': 'block', 'children': ['8', '14', '18', '22', '36', '73', '83', '151', '157', '163', '170']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '11', 'type': 'boolean_operator', 'children': ['12', '13'], 'value': 'or'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '13', 'type': 'dictionary', 'children': []},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'assignment', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '17', 'type': 'list', 'children': [], 'value': '[]'},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'props'},{'id': '21', 'type': 'list', 'children': [], 'value': '[]'},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '25', 'type': 'call', 'children': ['26', '35']},{'id': '26', 'type': 'attribute', 'children': ['27', '34']},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33']},{'id': '32', 'type': 'string', 'children': [], 'value': "'classes'"},{'id': '33', 'type': 'string', 'children': [], 'value': "''"},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'if_statement', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '38', 'type': 'block', 'children': ['39', '54', '64']},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '42', 'type': 'call', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'string', 'children': [], 'value': "' '"},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '46', 'type': 'argument_list', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '51', 'type': 'argument_list', 'children': ['52', '53']},{'id': '52', 'type': 'string', 'children': [], 'value': "r'\\s+'"},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'to_unicode'},{'id': '59', 'type': 'argument_list', 'children': ['60']},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'quoteattr'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'call', 'children': ['66', '69']},{'id': '66', 'type': 'attribute', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'binary_operator', 'children': ['71', '72'], 'value': '%'},{'id': '71', 'type': 'string', 'children': [], 'value': "'class=%s'"},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'classes'},{'id': '73', 'type': 'try_statement', 'children': ['74', '79']},{'id': '74', 'type': 'block', 'children': ['75']},{'id': '75', 'type': 'delete_statement', 'children': ['76']},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '78', 'type': 'string', 'children': [], 'value': "'classes'"},{'id': '79', 'type': 'except_clause', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '81', 'type': 'block', 'children': ['82']},{'id': '82', 'type': 'pass_statement', 'children': []},{'id': '83', 'type': 'for_statement', 'children': ['84', '87', '91']},{'id': '84', 'type': 'pattern_list', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '87', 'type': 'call', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'iteritems'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '91', 'type': 'block', 'children': ['92', '102', '109']},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'assignment', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '95', 'type': 'call', 'children': ['96', '99']},{'id': '96', 'type': 'attribute', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '99', 'type': 'argument_list', 'children': ['100', '101']},{'id': '100', 'type': 'string', 'children': [], 'value': "'_'"},{'id': '101', 'type': 'string', 'children': [], 'value': "'-'"},{'id': '102', 'type': 'expression_statement', 'children': ['103']},{'id': '103', 'type': 'assignment', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '105', 'type': 'call', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'to_unicode'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '109', 'type': 'if_statement', 'children': ['110', '115', '128']},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '112', 'type': 'argument_list', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '115', 'type': 'block', 'children': ['116']},{'id': '116', 'type': 'if_statement', 'children': ['117', '120']},{'id': '117', 'type': 'comparison_operator', 'children': ['118', '119'], 'value': 'is'},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '119', 'type': 'True', 'children': []},{'id': '120', 'type': 'block', 'children': ['121']},{'id': '121', 'type': 'expression_statement', 'children': ['122']},{'id': '122', 'type': 'call', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'props'},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '126', 'type': 'argument_list', 'children': ['127']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '128', 'type': 'else_clause', 'children': ['129']},{'id': '129', 'type': 'block', 'children': ['130', '140']},{'id': '130', 'type': 'expression_statement', 'children': ['131']},{'id': '131', 'type': 'assignment', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '133', 'type': 'call', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'quoteattr'},{'id': '135', 'type': 'argument_list', 'children': ['136']},{'id': '136', 'type': 'call', 'children': ['137', '138']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'Markup'},{'id': '138', 'type': 'argument_list', 'children': ['139']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'call', 'children': ['142', '145']},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '145', 'type': 'argument_list', 'children': ['146']},{'id': '146', 'type': 'binary_operator', 'children': ['147', '148'], 'value': '%'},{'id': '147', 'type': 'string', 'children': [], 'value': "u'%s=%s'"},{'id': '148', 'type': 'tuple', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '151', 'type': 'expression_statement', 'children': ['152']},{'id': '152', 'type': 'call', 'children': ['153', '156']},{'id': '153', 'type': 'attribute', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '156', 'type': 'argument_list', 'children': []},{'id': '157', 'type': 'expression_statement', 'children': ['158']},{'id': '158', 'type': 'call', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'props'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '162', 'type': 'argument_list', 'children': []},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'attrs'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'identifier', 'children': [], 'value': 'props'},{'id': '170', 'type': 'return_statement', 'children': ['171']},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'string', 'children': [], 'value': "u' '"},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '175', 'type': 'argument_list', 'children': ['176']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'attrs'} | def get_html_attrs(kwargs=None):
kwargs = kwargs or {}
attrs = []
props = []
classes = kwargs.get('classes', '').strip()
if classes:
classes = ' '.join(re.split(r'\s+', classes))
classes = to_unicode(quoteattr(classes))
attrs.append('class=%s' % classes)
try:
del kwargs['classes']
except KeyError:
pass
for key, value in iteritems(kwargs):
key = key.replace('_', '-')
key = to_unicode(key)
if isinstance(value, bool):
if value is True:
props.append(key)
else:
value = quoteattr(Markup(value))
attrs.append(u'%s=%s' % (key, value))
attrs.sort()
props.sort()
attrs.extend(props)
return u' '.join(attrs) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_dependencies'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'objects'},{'id': '5', 'type': 'block', 'children': ['6', '13', '17', '23', '29', '36', '62', '172', '178', '182', '308', '312', '325']},{'id': '6', 'type': 'import_from_statement', 'children': ['7', '11']},{'id': '7', 'type': 'dotted_name', 'children': ['8', '9', '10']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'django'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'db'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'models'},{'id': '11', 'type': 'dotted_name', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'get_model'},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '16', 'type': 'list', 'children': [], 'value': '[]'},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'models'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '22', 'type': 'argument_list', 'children': []},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '28', 'type': 'argument_list', 'children': []},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'objs_by_model'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'defaultdict'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '36', 'type': 'for_statement', 'children': ['37', '38', '39']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'objects'},{'id': '39', 'type': 'block', 'children': ['40', '46', '55']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '45', 'type': 'identifier', 'children': [], 'value': '__class__'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'call', 'children': ['48', '53']},{'id': '48', 'type': 'attribute', 'children': ['49', '52']},{'id': '49', 'type': 'subscript', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'objs_by_model'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'o'},{'id': '55', 'type': 'expression_statement', 'children': ['56']},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '62', 'type': 'for_statement', 'children': ['63', '64', '65']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '65', 'type': 'block', 'children': ['66', '73', '117', '163']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'models'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'add'},{'id': '71', 'type': 'argument_list', 'children': ['72']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '73', 'type': 'if_statement', 'children': ['74', '79', '111']},{'id': '74', 'type': 'call', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '76', 'type': 'argument_list', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '78', 'type': 'string', 'children': [], 'value': "'natural_key'"},{'id': '79', 'type': 'block', 'children': ['80', '91']},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '83', 'type': 'call', 'children': ['84', '85']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '85', 'type': 'argument_list', 'children': ['86', '89', '90']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'natural_key'},{'id': '89', 'type': 'string', 'children': [], 'value': "'dependencies'"},{'id': '90', 'type': 'list', 'children': [], 'value': '[]'},{'id': '91', 'type': 'if_statement', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '93', 'type': 'block', 'children': ['94']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '97', 'type': 'list_comprehension', 'children': ['98', '108']},{'id': '98', 'type': 'call', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'get_model'},{'id': '100', 'type': 'argument_list', 'children': ['101']},{'id': '101', 'type': 'list_splat', 'children': ['102']},{'id': '102', 'type': 'call', 'children': ['103', '106']},{'id': '103', 'type': 'attribute', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '106', 'type': 'argument_list', 'children': ['107']},{'id': '107', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '108', 'type': 'for_in_clause', 'children': ['109', '110']},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '111', 'type': 'else_clause', 'children': ['112']},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '116', 'type': 'list', 'children': [], 'value': '[]'},{'id': '117', 'type': 'for_statement', 'children': ['118', '119', '134']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '119', 'type': 'call', 'children': ['120', '123']},{'id': '120', 'type': 'attribute', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'itertools'},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'chain'},{'id': '123', 'type': 'argument_list', 'children': ['124', '129']},{'id': '124', 'type': 'attribute', 'children': ['125', '128']},{'id': '125', 'type': 'attribute', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '127', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '129', 'type': 'attribute', 'children': ['130', '133']},{'id': '130', 'type': 'attribute', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '132', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'many_to_many'},{'id': '134', 'type': 'block', 'children': ['135']},{'id': '135', 'type': 'if_statement', 'children': ['136', '151']},{'id': '136', 'type': 'boolean_operator', 'children': ['137', '144'], 'value': 'and'},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'hasattr'},{'id': '139', 'type': 'argument_list', 'children': ['140', '143']},{'id': '140', 'type': 'attribute', 'children': ['141', '142']},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'rel'},{'id': '143', 'type': 'string', 'children': [], 'value': "'to'"},{'id': '144', 'type': 'comparison_operator', 'children': ['145', '150'], 'value': '!='},{'id': '145', 'type': 'attribute', 'children': ['146', '149']},{'id': '146', 'type': 'attribute', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '148', 'type': 'identifier', 'children': [], 'value': 'rel'},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '151', 'type': 'block', 'children': ['152']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'call', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'attribute', 'children': ['159', '162']},{'id': '159', 'type': 'attribute', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'field'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'rel'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'to'},{'id': '163', 'type': 'expression_statement', 'children': ['164']},{'id': '164', 'type': 'call', 'children': ['165', '168']},{'id': '165', 'type': 'attribute', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '168', 'type': 'argument_list', 'children': ['169']},{'id': '169', 'type': 'tuple', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'call', 'children': ['174', '177']},{'id': '174', 'type': 'attribute', 'children': ['175', '176']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '177', 'type': 'argument_list', 'children': []},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '181', 'type': 'list', 'children': [], 'value': '[]'},{'id': '182', 'type': 'while_statement', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '184', 'type': 'block', 'children': ['185', '189', '193', '258', '304']},{'id': '185', 'type': 'expression_statement', 'children': ['186']},{'id': '186', 'type': 'assignment', 'children': ['187', '188']},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'skipped'},{'id': '188', 'type': 'list', 'children': [], 'value': '[]'},{'id': '189', 'type': 'expression_statement', 'children': ['190']},{'id': '190', 'type': 'assignment', 'children': ['191', '192']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'changed'},{'id': '192', 'type': 'False', 'children': []},{'id': '193', 'type': 'while_statement', 'children': ['194', '195']},{'id': '194', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '195', 'type': 'block', 'children': ['196', '206', '210', '233']},{'id': '196', 'type': 'expression_statement', 'children': ['197']},{'id': '197', 'type': 'assignment', 'children': ['198', '201']},{'id': '198', 'type': 'pattern_list', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '201', 'type': 'call', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'pop'},{'id': '205', 'type': 'argument_list', 'children': []},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'assignment', 'children': ['208', '209']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '209', 'type': 'True', 'children': []},{'id': '210', 'type': 'for_statement', 'children': ['211', '212', '224']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'candidate'},{'id': '212', 'type': 'generator_expression', 'children': ['213', '221']},{'id': '213', 'type': '()', 'children': ['214']},{'id': '214', 'type': 'boolean_operator', 'children': ['215', '218'], 'value': 'or'},{'id': '215', 'type': 'comparison_operator', 'children': ['216', '217'], 'value': 'not'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'models'},{'id': '218', 'type': 'comparison_operator', 'children': ['219', '220'], 'value': 'in'},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '221', 'type': 'for_in_clause', 'children': ['222', '223']},{'id': '222', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '224', 'type': 'block', 'children': ['225']},{'id': '225', 'type': 'if_statement', 'children': ['226', '228']},{'id': '226', 'type': 'not_operator', 'children': ['227']},{'id': '227', 'type': 'identifier', 'children': [], 'value': 'candidate'},{'id': '228', 'type': 'block', 'children': ['229']},{'id': '229', 'type': 'expression_statement', 'children': ['230']},{'id': '230', 'type': 'assignment', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '232', 'type': 'False', 'children': []},{'id': '233', 'type': 'if_statement', 'children': ['234', '235', '247']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'found'},{'id': '235', 'type': 'block', 'children': ['236', '243']},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'call', 'children': ['238', '241']},{'id': '238', 'type': 'attribute', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '241', 'type': 'argument_list', 'children': ['242']},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '243', 'type': 'expression_statement', 'children': ['244']},{'id': '244', 'type': 'assignment', 'children': ['245', '246']},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'changed'},{'id': '246', 'type': 'True', 'children': []},{'id': '247', 'type': 'else_clause', 'children': ['248']},{'id': '248', 'type': 'block', 'children': ['249']},{'id': '249', 'type': 'expression_statement', 'children': ['250']},{'id': '250', 'type': 'call', 'children': ['251', '254']},{'id': '251', 'type': 'attribute', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'skipped'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '254', 'type': 'argument_list', 'children': ['255']},{'id': '255', 'type': 'tuple', 'children': ['256', '257']},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '257', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '258', 'type': 'if_statement', 'children': ['259', '261']},{'id': '259', 'type': 'not_operator', 'children': ['260']},{'id': '260', 'type': 'identifier', 'children': [], 'value': 'changed'},{'id': '261', 'type': 'block', 'children': ['262']},{'id': '262', 'type': 'raise_statement', 'children': ['263']},{'id': '263', 'type': 'call', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'CommandError'},{'id': '265', 'type': 'argument_list', 'children': ['266']},{'id': '266', 'type': 'binary_operator', 'children': ['267', '268'], 'value': '%'},{'id': '267', 'type': 'string', 'children': [], 'value': '"Can\'t resolve dependencies for %s in serialized app list."'},{'id': '268', 'type': 'call', 'children': ['269', '272']},{'id': '269', 'type': 'attribute', 'children': ['270', '271']},{'id': '270', 'type': 'string', 'children': [], 'value': "', '"},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '272', 'type': 'generator_expression', 'children': ['273', '286']},{'id': '273', 'type': 'binary_operator', 'children': ['274', '275'], 'value': '%'},{'id': '274', 'type': 'string', 'children': [], 'value': "'%s.%s'"},{'id': '275', 'type': 'tuple', 'children': ['276', '281']},{'id': '276', 'type': 'attribute', 'children': ['277', '280']},{'id': '277', 'type': 'attribute', 'children': ['278', '279']},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '279', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'app_label'},{'id': '281', 'type': 'attribute', 'children': ['282', '285']},{'id': '282', 'type': 'attribute', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '284', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '285', 'type': 'identifier', 'children': [], 'value': 'object_name'},{'id': '286', 'type': 'for_in_clause', 'children': ['287', '290']},{'id': '287', 'type': 'pattern_list', 'children': ['288', '289']},{'id': '288', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '289', 'type': 'identifier', 'children': [], 'value': 'deps'},{'id': '290', 'type': 'call', 'children': ['291', '292']},{'id': '291', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '292', 'type': 'argument_list', 'children': ['293', '294']},{'id': '293', 'type': 'identifier', 'children': [], 'value': 'skipped'},{'id': '294', 'type': 'keyword_argument', 'children': ['295', '296']},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '296', 'type': 'lambda', 'children': ['297', '299']},{'id': '297', 'type': 'lambda_parameters', 'children': ['298']},{'id': '298', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '299', 'type': 'attribute', 'children': ['300', '303']},{'id': '300', 'type': 'subscript', 'children': ['301', '302']},{'id': '301', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '302', 'type': 'integer', 'children': [], 'value': '0'},{'id': '303', 'type': 'identifier', 'children': [], 'value': '__name__'},{'id': '304', 'type': 'expression_statement', 'children': ['305']},{'id': '305', 'type': 'assignment', 'children': ['306', '307']},{'id': '306', 'type': 'identifier', 'children': [], 'value': 'model_dependencies'},{'id': '307', 'type': 'identifier', 'children': [], 'value': 'skipped'},{'id': '308', 'type': 'expression_statement', 'children': ['309']},{'id': '309', 'type': 'assignment', 'children': ['310', '311']},{'id': '310', 'type': 'identifier', 'children': [], 'value': 'sorted_results'},{'id': '311', 'type': 'list', 'children': [], 'value': '[]'},{'id': '312', 'type': 'for_statement', 'children': ['313', '314', '315']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '314', 'type': 'identifier', 'children': [], 'value': 'model_list'},{'id': '315', 'type': 'block', 'children': ['316']},{'id': '316', 'type': 'expression_statement', 'children': ['317']},{'id': '317', 'type': 'call', 'children': ['318', '321']},{'id': '318', 'type': 'attribute', 'children': ['319', '320']},{'id': '319', 'type': 'identifier', 'children': [], 'value': 'sorted_results'},{'id': '320', 'type': 'identifier', 'children': [], 'value': 'extend'},{'id': '321', 'type': 'argument_list', 'children': ['322']},{'id': '322', 'type': 'subscript', 'children': ['323', '324']},{'id': '323', 'type': 'identifier', 'children': [], 'value': 'objs_by_model'},{'id': '324', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '325', 'type': 'return_statement', 'children': ['326']},{'id': '326', 'type': 'identifier', 'children': [], 'value': 'sorted_results'} | def sort_dependencies(objects):
from django.db.models import get_model
model_dependencies = []
models = set()
model_list = set()
objs_by_model = defaultdict(list)
for o in objects:
model = o.__class__
objs_by_model[model].append(o)
model_list.add(model)
for model in model_list:
models.add(model)
if hasattr(model, 'natural_key'):
deps = getattr(model.natural_key, 'dependencies', [])
if deps:
deps = [get_model(*d.split('.')) for d in deps]
else:
deps = []
for field in itertools.chain(model._meta.fields, model._meta.many_to_many):
if hasattr(field.rel, 'to') and field.rel.to != model:
deps.append(field.rel.to)
model_dependencies.append((model, deps))
model_dependencies.reverse()
model_list = []
while model_dependencies:
skipped = []
changed = False
while model_dependencies:
model, deps = model_dependencies.pop()
found = True
for candidate in ((d not in models or d in model_list) for d in deps):
if not candidate:
found = False
if found:
model_list.append(model)
changed = True
else:
skipped.append((model, deps))
if not changed:
raise CommandError("Can't resolve dependencies for %s in serialized app list." %
', '.join('%s.%s' % (model._meta.app_label, model._meta.object_name)
for model, deps in sorted(skipped, key=lambda obj: obj[0].__name__))
)
model_dependencies = skipped
sorted_results = []
for model in model_list:
sorted_results.extend(objs_by_model[model])
return sorted_results |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_languages'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '7', 'type': 'attribute', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'Qt'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'AscendingOrder'},{'id': '10', 'type': 'block', 'children': ['11', '17', '40']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'beginResetModel'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '22']},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': '__languages'},{'id': '22', 'type': 'call', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '24', 'type': 'argument_list', 'children': ['25', '28', '37']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': '__languages'},{'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '30', 'type': 'lambda', 'children': ['31', '33']},{'id': '31', 'type': 'lambda_parameters', 'children': ['32']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '33', 'type': '()', 'children': ['34']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'call', 'children': ['42', '45']},{'id': '42', 'type': 'attribute', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'endResetModel'},{'id': '45', 'type': 'argument_list', 'children': []} | def sort_languages(self, order=Qt.AscendingOrder):
self.beginResetModel()
self.__languages = sorted(self.__languages, key=lambda x: (x.name), reverse=order)
self.endResetModel() |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'fmt_pairs'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '7', 'type': 'integer', 'children': [], 'value': '4'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '25', '31', '38', '48', '58', '79']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'lengths'},{'id': '15', 'type': 'list_comprehension', 'children': ['16', '22']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'subscript', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '21', 'type': 'integer', 'children': [], 'value': '0'},{'id': '22', 'type': 'for_in_clause', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '25', 'type': 'if_statement', 'children': ['26', '28']},{'id': '26', 'type': 'not_operator', 'children': ['27']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'lengths'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'return_statement', 'children': ['30']},{'id': '30', 'type': 'string', 'children': [], 'value': "''"},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'longest'},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'max'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'lengths'},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '43', 'type': 'argument_list', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'sort_key'},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'formatter'},{'id': '51', 'type': 'binary_operator', 'children': ['52', '53'], 'value': '%'},{'id': '52', 'type': 'string', 'children': [], 'value': "'%s{: <%d} {}'"},{'id': '53', 'type': 'tuple', 'children': ['54', '57']},{'id': '54', 'type': 'binary_operator', 'children': ['55', '56'], 'value': '*'},{'id': '55', 'type': 'string', 'children': [], 'value': "' '"},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'longest'},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'string'},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'list_comprehension', 'children': ['67', '74']},{'id': '67', 'type': 'call', 'children': ['68', '71']},{'id': '68', 'type': 'attribute', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'formatter'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '71', 'type': 'argument_list', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '74', 'type': 'for_in_clause', 'children': ['75', '78']},{'id': '75', 'type': 'pattern_list', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'obj'},{'id': '79', 'type': 'return_statement', 'children': ['80']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'string'} | def fmt_pairs(obj, indent=4, sort_key=None):
lengths = [len(x[0]) for x in obj]
if not lengths:
return ''
longest = max(lengths)
obj = sorted(obj, key=sort_key)
formatter = '%s{: <%d} {}' % (' ' * indent, longest)
string = '\n'.join([formatter.format(k, v) for k, v in obj])
return string |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'serialize'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'as_dict'},{'id': '7', 'type': 'False', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '25', '48', '64', '88']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '15', 'type': 'call', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '17', 'type': 'argument_list', 'children': ['18', '19', '20']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'string', 'children': [], 'value': "'files'"},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'run'},{'id': '24', 'type': 'argument_list', 'children': []},{'id': '25', 'type': 'if_statement', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'as_dict'},{'id': '27', 'type': 'block', 'children': ['28']},{'id': '28', 'type': 'return_statement', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'dict'},{'id': '31', 'type': 'generator_expression', 'children': ['32', '39']},{'id': '32', 'type': 'tuple', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'to_dict'},{'id': '38', 'type': 'argument_list', 'children': []},{'id': '39', 'type': 'for_in_clause', 'children': ['40', '43']},{'id': '40', 'type': 'pattern_list', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '47', 'type': 'argument_list', 'children': []},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'assignment', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '51', 'type': 'generator_expression', 'children': ['52', '57']},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'to_dict'},{'id': '56', 'type': 'argument_list', 'children': []},{'id': '57', 'type': 'for_in_clause', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'p'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'files'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'values'},{'id': '63', 'type': 'argument_list', 'children': []},{'id': '64', 'type': 'if_statement', 'children': ['65', '69', '78']},{'id': '65', 'type': 'call', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'callable'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '69', 'type': 'block', 'children': ['70']},{'id': '70', 'type': 'return_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '73', 'type': 'argument_list', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '78', 'type': 'elif_clause', 'children': ['79', '82']},{'id': '79', 'type': 'comparison_operator', 'children': ['80', '81'], 'value': 'is'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '81', 'type': 'True', 'children': []},{'id': '82', 'type': 'block', 'children': ['83']},{'id': '83', 'type': 'return_statement', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '86', 'type': 'argument_list', 'children': ['87']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '88', 'type': 'return_statement', 'children': ['89']},{'id': '89', 'type': 'call', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '91', 'type': 'argument_list', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'data'} | def serialize(self, as_dict=False, sort=None):
files = getattr(self, 'files', self.run())
if as_dict:
return dict((fn, p.to_dict()) for fn, p in files.items())
data = (p.to_dict() for p in files.values())
if callable(sort):
return sorted(data, key=sort)
elif sort is True:
return sorted(data)
return list(data) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'iteritems'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '28']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'sorted_data'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '11', 'type': 'argument_list', 'children': ['12', '19', '22', '25']},{'id': '12', 'type': 'call', 'children': ['13', '18']},{'id': '13', 'type': 'attribute', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'iteritems'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'attribute', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'cmp'},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '28', 'type': 'for_statement', 'children': ['29', '32', '33']},{'id': '29', 'type': 'pattern_list', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'sorted_data'},{'id': '33', 'type': 'block', 'children': ['34']},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'yield', 'children': ['36']},{'id': '36', 'type': 'expression_list', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'v'} | def iteritems(self):
sorted_data = sorted(self.data.iteritems(), self.cmp, self.key,
self.reverse)
for k,v in sorted_data:
yield k,v |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_posts'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '10', 'type': 'None', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'private'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'block', 'children': ['15', '21', '37', '54', '63']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '21', 'type': 'if_statement', 'children': ['22', '24']},{'id': '22', 'type': 'not_operator', 'children': ['23']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'private'},{'id': '24', 'type': 'block', 'children': ['25']},{'id': '25', 'type': 'expression_statement', 'children': ['26']},{'id': '26', 'type': 'assignment', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '28', 'type': 'list_comprehension', 'children': ['29', '30', '33']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '30', 'type': 'for_in_clause', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '33', 'type': 'if_clause', 'children': ['34']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'public'},{'id': '37', 'type': 'if_statement', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '39', 'type': 'block', 'children': ['40']},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '43', 'type': 'list_comprehension', 'children': ['44', '45', '48']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '45', 'type': 'for_in_clause', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '48', 'type': 'if_clause', 'children': ['49']},{'id': '49', 'type': 'comparison_operator', 'children': ['50', '51'], 'value': 'in'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'tag'},{'id': '51', 'type': 'attribute', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'post'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '54', 'type': 'if_statement', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'return_statement', 'children': ['58']},{'id': '58', 'type': 'subscript', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'posts'},{'id': '60', 'type': 'slice', 'children': ['61', '62']},{'id': '61', 'type': 'colon', 'children': []},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'num'},{'id': '63', 'type': 'return_statement', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'posts'} | def get_posts(self, num=None, tag=None, private=False):
posts = self.posts
if not private:
posts = [post for post in posts if post.public]
if tag:
posts = [post for post in posts if tag in post.tags]
if num:
return posts[:num]
return posts |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_sort_function'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '5', 'type': 'block', 'children': ['6', '26', '71']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'tuple'},{'id': '11', 'type': 'generator_expression', 'children': ['12', '23']},{'id': '12', 'type': 'tuple', 'children': ['13', '16']},{'id': '13', 'type': 'subscript', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '15', 'type': 'string', 'children': [], 'value': "'key'"},{'id': '16', 'type': 'conditional_expression', 'children': ['17', '19', '22'], 'value': 'if'},{'id': '17', 'type': 'unary_operator', 'children': ['18'], 'value': '-'},{'id': '18', 'type': 'integer', 'children': [], 'value': '1'},{'id': '19', 'type': 'subscript', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '21', 'type': 'string', 'children': [], 'value': "'reverse'"},{'id': '22', 'type': 'integer', 'children': [], 'value': '1'},{'id': '23', 'type': 'for_in_clause', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '26', 'type': 'function_definition', 'children': ['27', '28', '31']},{'id': '27', 'type': 'function_name', 'children': [], 'value': 'sort_function'},{'id': '28', 'type': 'parameters', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '31', 'type': 'block', 'children': ['32', '69']},{'id': '32', 'type': 'for_statement', 'children': ['33', '36', '37']},{'id': '33', 'type': 'pattern_list', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'stable'},{'id': '37', 'type': 'block', 'children': ['38', '60']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'cmp'},{'id': '43', 'type': 'argument_list', 'children': ['44', '52']},{'id': '44', 'type': 'conditional_expression', 'children': ['45', '50', '51'], 'value': 'if'},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '47', 'type': 'argument_list', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'a'},{'id': '52', 'type': 'conditional_expression', 'children': ['53', '58', '59'], 'value': 'if'},{'id': '53', 'type': 'call', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'getattr'},{'id': '55', 'type': 'argument_list', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'b'},{'id': '60', 'type': 'if_statement', 'children': ['61', '64']},{'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': '!='},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '63', 'type': 'integer', 'children': [], 'value': '0'},{'id': '64', 'type': 'block', 'children': ['65']},{'id': '65', 'type': 'return_statement', 'children': ['66']},{'id': '66', 'type': 'binary_operator', 'children': ['67', '68'], 'value': '*'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'direction'},{'id': '69', 'type': 'return_statement', 'children': ['70']},{'id': '70', 'type': 'integer', 'children': [], 'value': '0'},{'id': '71', 'type': 'return_statement', 'children': ['72']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'sort_function'} | def get_sort_function(order):
stable = tuple((d['key'], -1 if d['reverse'] else 1) for d in order)
def sort_function(a, b):
for name, direction in stable:
v = cmp(getattr(a, name) if a else a, getattr(b, name) if b else b)
if v != 0:
return v * direction
return 0
return sort_function |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_proxy_model'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '6', 'type': 'block', 'children': ['7', '14', '21', '32']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'proxy'},{'id': '10', 'type': 'call', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'ReftrackSortFilterModel'},{'id': '12', 'type': 'argument_list', 'children': ['13']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'expression_statement', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'proxy'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'setSourceModel'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'call', 'children': ['23', '28']},{'id': '23', 'type': 'attribute', 'children': ['24', '27']},{'id': '24', 'type': 'attribute', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'rowsInserted'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'connect'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'sort_model'},{'id': '32', 'type': 'return_statement', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'proxy'} | def create_proxy_model(self, model):
proxy = ReftrackSortFilterModel(self)
proxy.setSourceModel(model)
model.rowsInserted.connect(self.sort_model)
return proxy |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_model'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'list_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '9', 'type': 'block', 'children': ['10', '19', '28', '37']},{'id': '10', 'type': 'expression_statement', 'children': ['11']},{'id': '11', 'type': 'call', 'children': ['12', '17']},{'id': '12', 'type': 'attribute', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'proxy'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '17', 'type': 'argument_list', 'children': ['18']},{'id': '18', 'type': 'integer', 'children': [], 'value': '17'},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'call', 'children': ['21', '26']},{'id': '21', 'type': 'attribute', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'proxy'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '26', 'type': 'argument_list', 'children': ['27']},{'id': '27', 'type': 'integer', 'children': [], 'value': '2'},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '35']},{'id': '30', 'type': 'attribute', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'proxy'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'integer', 'children': [], 'value': '1'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '44']},{'id': '39', 'type': 'attribute', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'proxy'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'integer', 'children': [], 'value': '0'} | def sort_model(self, *args, **kwargs):
self.proxy.sort(17)
self.proxy.sort(2)
self.proxy.sort(1)
self.proxy.sort(0) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepare_value'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '6', 'type': 'block', 'children': ['7', '41']},{'id': '7', 'type': 'if_statement', 'children': ['8', '15']},{'id': '8', 'type': 'boolean_operator', 'children': ['9', '12'], 'value': 'and'},{'id': '9', 'type': 'comparison_operator', 'children': ['10', '11'], 'value': 'is'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'required'},{'id': '15', 'type': 'block', 'children': ['16', '25']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'choices'},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'choices'},{'id': '25', 'type': 'if_statement', 'children': ['26', '32']},{'id': '26', 'type': 'comparison_operator', 'children': ['27', '31'], 'value': '=='},{'id': '27', 'type': 'call', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'choices'},{'id': '31', 'type': 'integer', 'children': [], 'value': '1'},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'value'},{'id': '36', 'type': 'subscript', 'children': ['37', '40']},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'choices'},{'id': '39', 'type': 'integer', 'children': [], 'value': '0'},{'id': '40', 'type': 'integer', 'children': [], 'value': '0'},{'id': '41', 'type': 'return_statement', 'children': ['42']},{'id': '42', 'type': 'call', 'children': ['43', '50']},{'id': '43', 'type': 'attribute', 'children': ['44', '49']},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'super'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'TemplateChoiceField'},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'prepare_value'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'value'} | def prepare_value(self, value):
if value is None and self.required:
choices =list(self.choices)
if len(choices) == 1:
value = choices[0][0]
return super(TemplateChoiceField, self).prepare_value(value) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '15', '39']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'call', 'children': ['8', '13']},{'id': '8', 'type': 'attribute', 'children': ['9', '12']},{'id': '9', 'type': 'attribute', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '11', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '13', 'type': 'argument_list', 'children': ['14']},{'id': '14', 'type': 'string', 'children': [], 'value': "'Sorting responses by priority'"},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_responses'},{'id': '20', 'type': 'call', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'},{'id': '22', 'type': 'argument_list', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '25', 'type': 'argument_list', 'children': ['26', '36']},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'call', 'children': ['30', '35']},{'id': '30', 'type': 'attribute', 'children': ['31', '34']},{'id': '31', 'type': 'attribute', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '33', 'type': 'identifier', 'children': [], 'value': '_responses'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '38', 'type': 'True', 'children': []},{'id': '39', 'type': 'expression_statement', 'children': ['40']},{'id': '40', 'type': 'assignment', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '44', 'type': 'True', 'children': []} | def _sort(self):
self._log.debug('Sorting responses by priority')
self._responses = OrderedDict(sorted(list(self._responses.items()), reverse=True))
self.sorted = True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'csv_row_to_transaction'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'source_encoding'},{'id': '8', 'type': 'string', 'children': [], 'value': '"latin1"'},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'date_format'},{'id': '11', 'type': 'string', 'children': [], 'value': '"%d-%m-%Y"'},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'thousand_sep'},{'id': '14', 'type': 'string', 'children': [], 'value': '"."'},{'id': '15', 'type': 'default_parameter', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'decimal_sep'},{'id': '17', 'type': 'string', 'children': [], 'value': '","'},{'id': '18', 'type': 'block', 'children': ['19', '28', '37', '46', '56', '65', '74']},{'id': '19', 'type': 'expression_statement', 'children': ['20']},{'id': '20', 'type': 'assignment', 'children': ['21', '27']},{'id': '21', 'type': 'pattern_list', 'children': ['22', '23', '24', '25', '26']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'xfer'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'posted'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '28', 'type': 'expression_statement', 'children': ['29']},{'id': '29', 'type': 'assignment', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'xfer'},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'Parse'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '35', 'type': 'argument_list', 'children': ['36']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'xfer'},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'posted'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'Parse'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'date'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'posted'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'Parse'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'to_utf8'},{'id': '53', 'type': 'argument_list', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'source_encoding'},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'Parse'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'money'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'Parse'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'money'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'total'},{'id': '74', 'type': 'return_statement', 'children': ['75']},{'id': '75', 'type': 'call', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'Transaction'},{'id': '77', 'type': 'argument_list', 'children': ['78', '79', '80', '81', '82', '83']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'xfer'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'posted'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'amount'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'total'} | def csv_row_to_transaction(index, row, source_encoding="latin1",
date_format="%d-%m-%Y", thousand_sep=".", decimal_sep=","):
xfer, posted, message, amount, total = row
xfer = Parse.date(xfer)
posted = Parse.date(posted)
message = Parse.to_utf8(message, source_encoding)
amount = Parse.money(amount)
total = Parse.money(total)
return Transaction(index, xfer, posted, message, amount, total) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'csv_to_transactions'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'handle'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'source_encoding'},{'id': '7', 'type': 'string', 'children': [], 'value': '"latin1"'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'date_format'},{'id': '10', 'type': 'string', 'children': [], 'value': '"%d-%m-%Y"'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'thousand_sep'},{'id': '13', 'type': 'string', 'children': [], 'value': '"."'},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'decimal_sep'},{'id': '16', 'type': 'string', 'children': [], 'value': '","'},{'id': '17', 'type': 'block', 'children': ['18', '24', '39', '61']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'trans'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'Transactions'},{'id': '23', 'type': 'argument_list', 'children': []},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'csv'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'reader'},{'id': '31', 'type': 'argument_list', 'children': ['32', '33', '36']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'handle'},{'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'delimiter'},{'id': '35', 'type': 'string', 'children': [], 'value': '";"'},{'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'quotechar'},{'id': '38', 'type': 'string', 'children': [], 'value': '"\\""'},{'id': '39', 'type': 'for_statement', 'children': ['40', '43', '47']},{'id': '40', 'type': 'pattern_list', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'rows'},{'id': '47', 'type': 'block', 'children': ['48']},{'id': '48', 'type': 'expression_statement', 'children': ['49']},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'trans'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '53', 'type': 'argument_list', 'children': ['54']},{'id': '54', 'type': 'call', 'children': ['55', '58']},{'id': '55', 'type': 'attribute', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'Parse'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'csv_row_to_transaction'},{'id': '58', 'type': 'argument_list', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '61', 'type': 'return_statement', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'trans'} | def csv_to_transactions(handle, source_encoding="latin1",
date_format="%d-%m-%Y", thousand_sep=".", decimal_sep=","):
trans = Transactions()
rows = csv.reader(handle, delimiter=";", quotechar="\"")
for index, row in enumerate(rows):
trans.append(Parse.csv_row_to_transaction(index, row))
return trans |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'filterAcceptsRow'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'parentindex'},{'id': '7', 'type': 'block', 'children': ['8', '24', '49', '60', '69']},{'id': '8', 'type': 'if_statement', 'children': ['9', '21']},{'id': '9', 'type': 'not_operator', 'children': ['10']},{'id': '10', 'type': 'call', 'children': ['11', '18']},{'id': '11', 'type': 'attribute', 'children': ['12', '17']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'super'},{'id': '14', 'type': 'argument_list', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'ReftrackSortFilterModel'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'filterAcceptsRow'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'parentindex'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'return_statement', 'children': ['23']},{'id': '23', 'type': 'False', 'children': []},{'id': '24', 'type': 'if_statement', 'children': ['25', '30', '39']},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'parentindex'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'isValid'},{'id': '29', 'type': 'argument_list', 'children': []},{'id': '30', 'type': 'block', 'children': ['31']},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'parentindex'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '38', 'type': 'argument_list', 'children': []},{'id': '39', 'type': 'else_clause', 'children': ['40']},{'id': '40', 'type': 'block', 'children': ['41']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '44', 'type': 'call', 'children': ['45', '48']},{'id': '45', 'type': 'attribute', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'sourceModel'},{'id': '48', 'type': 'argument_list', 'children': []},{'id': '49', 'type': 'expression_statement', 'children': ['50']},{'id': '50', 'type': 'assignment', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '52', 'type': 'call', 'children': ['53', '56']},{'id': '53', 'type': 'attribute', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'm'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58', '59']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'row'},{'id': '58', 'type': 'integer', 'children': [], 'value': '18'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'parentindex'},{'id': '60', 'type': 'expression_statement', 'children': ['61']},{'id': '61', 'type': 'assignment', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'reftrack'},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'REFTRACK_OBJECT_ROLE'},{'id': '69', 'type': 'if_statement', 'children': ['70', '72', '75']},{'id': '70', 'type': 'not_operator', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'reftrack'},{'id': '72', 'type': 'block', 'children': ['73']},{'id': '73', 'type': 'return_statement', 'children': ['74']},{'id': '74', 'type': 'True', 'children': []},{'id': '75', 'type': 'else_clause', 'children': ['76']},{'id': '76', 'type': 'block', 'children': ['77']},{'id': '77', 'type': 'return_statement', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'filter_accept_reftrack'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'reftrack'} | def filterAcceptsRow(self, row, parentindex):
if not super(ReftrackSortFilterModel, self).filterAcceptsRow(row, parentindex):
return False
if parentindex.isValid():
m = parentindex.model()
else:
m = self.sourceModel()
i = m.index(row, 18, parentindex)
reftrack = i.data(REFTRACK_OBJECT_ROLE)
if not reftrack:
return True
else:
return self.filter_accept_reftrack(reftrack) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'load_grid_data'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'data_type'},{'id': '7', 'type': 'string', 'children': [], 'value': '"binary"'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '10', 'type': 'True', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '13', 'type': 'string', 'children': [], 'value': '" "'},{'id': '14', 'type': 'block', 'children': ['15', '54', '64', '72', '218']},{'id': '15', 'type': 'if_statement', 'children': ['16', '23', '29']},{'id': '16', 'type': 'not_operator', 'children': ['17']},{'id': '17', 'type': 'comparison_operator', 'children': ['18', '22'], 'value': 'is'},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '20', 'type': 'argument_list', 'children': ['21']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '27', 'type': 'list', 'children': ['28'], 'value': '[file_list]'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '29', 'type': 'elif_clause', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'expression_statement', 'children': ['33']},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '40', 'type': 'lambda', 'children': ['41', '43']},{'id': '41', 'type': 'lambda_parameters', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '43', 'type': 'call', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '45', 'type': 'argument_list', 'children': ['46']},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'sub'},{'id': '50', 'type': 'argument_list', 'children': ['51', '52', '53']},{'id': '51', 'type': 'string', 'children': [], 'value': '"[^0-9]"'},{'id': '52', 'type': 'string', 'children': [], 'value': '""'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'world_size'},{'id': '57', 'type': 'call', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'get_world_dimensions'},{'id': '59', 'type': 'argument_list', 'children': ['60', '63']},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '62', 'type': 'integer', 'children': [], 'value': '0'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'initialize_grid'},{'id': '69', 'type': 'argument_list', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'world_size'},{'id': '71', 'type': 'list', 'children': [], 'value': '[]'},{'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'file_list'},{'id': '75', 'type': 'block', 'children': ['76', '83', '91', '212']},{'id': '76', 'type': 'expression_statement', 'children': ['77']},{'id': '77', 'type': 'assignment', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'infile'},{'id': '79', 'type': 'call', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '81', 'type': 'argument_list', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'assignment', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'infile'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'readlines'},{'id': '90', 'type': 'argument_list', 'children': []},{'id': '91', 'type': 'for_statement', 'children': ['92', '93', '99']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '93', 'type': 'call', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '95', 'type': 'argument_list', 'children': ['96']},{'id': '96', 'type': 'subscript', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'world_size'},{'id': '98', 'type': 'integer', 'children': [], 'value': '1'},{'id': '99', 'type': 'block', 'children': ['100', '117']},{'id': '100', 'type': 'expression_statement', 'children': ['101']},{'id': '101', 'type': 'assignment', 'children': ['102', '105']},{'id': '102', 'type': 'subscript', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '105', 'type': 'call', 'children': ['106', '115']},{'id': '106', 'type': 'attribute', 'children': ['107', '114']},{'id': '107', 'type': 'call', 'children': ['108', '113']},{'id': '108', 'type': 'attribute', 'children': ['109', '112']},{'id': '109', 'type': 'subscript', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '113', 'type': 'argument_list', 'children': []},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '115', 'type': 'argument_list', 'children': ['116']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'delim'},{'id': '117', 'type': 'for_statement', 'children': ['118', '119', '125']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '119', 'type': 'call', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'subscript', 'children': ['123', '124']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'world_size'},{'id': '124', 'type': 'integer', 'children': [], 'value': '0'},{'id': '125', 'type': 'block', 'children': ['126', '201']},{'id': '126', 'type': 'if_statement', 'children': ['127', '130', '145', '161', '177', '193']},{'id': '127', 'type': 'comparison_operator', 'children': ['128', '129'], 'value': '=='},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'data_type'},{'id': '129', 'type': 'string', 'children': [], 'value': '"binary"'},{'id': '130', 'type': 'block', 'children': ['131']},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'assignment', 'children': ['133', '134']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '134', 'type': 'call', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'bin'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'subscript', 'children': ['141', '144']},{'id': '141', 'type': 'subscript', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '145', 'type': 'elif_clause', 'children': ['146', '149']},{'id': '146', 'type': 'comparison_operator', 'children': ['147', '148'], 'value': '=='},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'data_type'},{'id': '148', 'type': 'string', 'children': [], 'value': '"float"'},{'id': '149', 'type': 'block', 'children': ['150']},{'id': '150', 'type': 'expression_statement', 'children': ['151']},{'id': '151', 'type': 'assignment', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '153', 'type': 'call', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '155', 'type': 'argument_list', 'children': ['156']},{'id': '156', 'type': 'subscript', 'children': ['157', '160']},{'id': '157', 'type': 'subscript', 'children': ['158', '159']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '161', 'type': 'elif_clause', 'children': ['162', '165']},{'id': '162', 'type': 'comparison_operator', 'children': ['163', '164'], 'value': '=='},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'data_type'},{'id': '164', 'type': 'string', 'children': [], 'value': '"int"'},{'id': '165', 'type': 'block', 'children': ['166']},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '169', 'type': 'call', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '171', 'type': 'argument_list', 'children': ['172']},{'id': '172', 'type': 'subscript', 'children': ['173', '176']},{'id': '173', 'type': 'subscript', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '177', 'type': 'elif_clause', 'children': ['178', '181']},{'id': '178', 'type': 'comparison_operator', 'children': ['179', '180'], 'value': '=='},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'data_type'},{'id': '180', 'type': 'string', 'children': [], 'value': '"string"'},{'id': '181', 'type': 'block', 'children': ['182']},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '185', 'type': 'call', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '187', 'type': 'argument_list', 'children': ['188']},{'id': '188', 'type': 'subscript', 'children': ['189', '192']},{'id': '189', 'type': 'subscript', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'lines'},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '193', 'type': 'else_clause', 'children': ['194']},{'id': '194', 'type': 'block', 'children': ['195', '200']},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'call', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '198', 'type': 'argument_list', 'children': ['199']},{'id': '199', 'type': 'string', 'children': [], 'value': '"Unsupported data_type passed to load_grid"'},{'id': '200', 'type': 'return_statement', 'children': []},{'id': '201', 'type': 'expression_statement', 'children': ['202']},{'id': '202', 'type': 'call', 'children': ['203', '210']},{'id': '203', 'type': 'attribute', 'children': ['204', '209']},{'id': '204', 'type': 'subscript', 'children': ['205', '208']},{'id': '205', 'type': 'subscript', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'j'},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '210', 'type': 'argument_list', 'children': ['211']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'val'},{'id': '212', 'type': 'expression_statement', 'children': ['213']},{'id': '213', 'type': 'call', 'children': ['214', '217']},{'id': '214', 'type': 'attribute', 'children': ['215', '216']},{'id': '215', 'type': 'identifier', 'children': [], 'value': 'infile'},{'id': '216', 'type': 'identifier', 'children': [], 'value': 'close'},{'id': '217', 'type': 'argument_list', 'children': []},{'id': '218', 'type': 'return_statement', 'children': ['219']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'data'} | def load_grid_data(file_list, data_type="binary", sort=True, delim=" "):
if not type(file_list) is list:
file_list = [file_list]
elif sort:
file_list.sort(key=lambda f: int(re.sub("[^0-9]", "", f)))
world_size = get_world_dimensions(file_list[0], delim)
data = initialize_grid(world_size, [])
for f in file_list:
infile = open(f)
lines = infile.readlines()
for i in range(world_size[1]):
lines[i] = lines[i].strip().split(delim)
for j in range(world_size[0]):
if data_type == "binary":
val = bin(int(lines[i][j]))
elif data_type == "float":
val = float(lines[i][j])
elif data_type == "int":
val = int(lines[i][j])
elif data_type == "string":
val = str(lines[i][j])
else:
print("Unsupported data_type passed to load_grid")
return
data[i][j].append(val)
infile.close()
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '113', '119', '156']},{'id': '6', 'type': 'for_statement', 'children': ['7', '10', '17']},{'id': '7', 'type': 'pattern_list', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'triggers'},{'id': '10', 'type': 'call', 'children': ['11', '16']},{'id': '11', 'type': 'attribute', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_triggers'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '16', 'type': 'argument_list', 'children': []},{'id': '17', 'type': 'block', 'children': ['18', '34', '46', '59', '81', '103']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'call', 'children': ['20', '25']},{'id': '20', 'type': 'attribute', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '23', 'type': 'identifier', 'children': [], 'value': '_log'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '25', 'type': 'argument_list', 'children': ['26']},{'id': '26', 'type': 'call', 'children': ['27', '30']},{'id': '27', 'type': 'attribute', 'children': ['28', '29']},{'id': '28', 'type': 'string', 'children': [], 'value': "'Sorting priority {priority} triggers'"},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '30', 'type': 'argument_list', 'children': ['31']},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '34', 'type': 'expression_statement', 'children': ['35']},{'id': '35', 'type': 'assignment', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'atomics'},{'id': '37', 'type': 'list_comprehension', 'children': ['38', '39', '42']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '39', 'type': 'for_in_clause', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'triggers'},{'id': '42', 'type': 'if_clause', 'children': ['43']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'pattern_is_atomic'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'wildcards'},{'id': '49', 'type': 'list_comprehension', 'children': ['50', '51', '54']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '51', 'type': 'for_in_clause', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'triggers'},{'id': '54', 'type': 'if_clause', 'children': ['55']},{'id': '55', 'type': 'not_operator', 'children': ['56']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'pattern_is_atomic'},{'id': '59', 'type': 'expression_statement', 'children': ['60']},{'id': '60', 'type': 'assignment', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'atomics'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '64', 'type': 'argument_list', 'children': ['65', '66', '78']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'atomics'},{'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '68', 'type': 'lambda', 'children': ['69', '71']},{'id': '69', 'type': 'lambda_parameters', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '71', 'type': 'tuple', 'children': ['72', '75']},{'id': '72', 'type': 'attribute', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'pattern_words'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'pattern_len'},{'id': '78', 'type': 'keyword_argument', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '80', 'type': 'True', 'children': []},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'assignment', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'wildcards'},{'id': '84', 'type': 'call', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '86', 'type': 'argument_list', 'children': ['87', '88', '100']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'wildcards'},{'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '90', 'type': 'lambda', 'children': ['91', '93']},{'id': '91', 'type': 'lambda_parameters', 'children': ['92']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '93', 'type': 'tuple', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'pattern_words'},{'id': '97', 'type': 'attribute', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'pattern_len'},{'id': '100', 'type': 'keyword_argument', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '102', 'type': 'True', 'children': []},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '110']},{'id': '105', 'type': 'subscript', 'children': ['106', '109']},{'id': '106', 'type': 'attribute', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '108', 'type': 'identifier', 'children': [], 'value': '_triggers'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '110', 'type': 'binary_operator', 'children': ['111', '112'], 'value': '+'},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'atomics'},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'wildcards'},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '117', 'type': 'identifier', 'children': [], 'value': '_sorted_triggers'},{'id': '118', 'type': 'list', 'children': [], 'value': '[]'},{'id': '119', 'type': 'for_statement', 'children': ['120', '121', '142']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'triggers'},{'id': '121', 'type': 'list_comprehension', 'children': ['122', '127']},{'id': '122', 'type': 'subscript', 'children': ['123', '126']},{'id': '123', 'type': 'attribute', 'children': ['124', '125']},{'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '125', 'type': 'identifier', 'children': [], 'value': '_triggers'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '127', 'type': 'for_in_clause', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'priority'},{'id': '129', 'type': 'call', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '131', 'type': 'argument_list', 'children': ['132', '139']},{'id': '132', 'type': 'call', 'children': ['133', '138']},{'id': '133', 'type': 'attribute', 'children': ['134', '137']},{'id': '134', 'type': 'attribute', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '136', 'type': 'identifier', 'children': [], 'value': '_triggers'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '138', 'type': 'argument_list', 'children': []},{'id': '139', 'type': 'keyword_argument', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '141', 'type': 'True', 'children': []},{'id': '142', 'type': 'block', 'children': ['143']},{'id': '143', 'type': 'for_statement', 'children': ['144', '145', '146']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'triggers'},{'id': '146', 'type': 'block', 'children': ['147']},{'id': '147', 'type': 'expression_statement', 'children': ['148']},{'id': '148', 'type': 'call', 'children': ['149', '154']},{'id': '149', 'type': 'attribute', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '152', 'type': 'identifier', 'children': [], 'value': '_sorted_triggers'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'identifier', 'children': [], 'value': 'trigger'},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '161', 'type': 'True', 'children': []} | def sort(self):
for priority, triggers in self._triggers.items():
self._log.debug('Sorting priority {priority} triggers'.format(priority=priority))
atomics = [trigger for trigger in triggers if trigger.pattern_is_atomic]
wildcards = [trigger for trigger in triggers if not trigger.pattern_is_atomic]
atomics = sorted(atomics, key=lambda trigger: (trigger.pattern_words, trigger.pattern_len), reverse=True)
wildcards = sorted(wildcards, key=lambda trigger: (trigger.pattern_words, trigger.pattern_len),
reverse=True)
self._triggers[priority] = atomics + wildcards
self._sorted_triggers = []
for triggers in [self._triggers[priority] for priority in sorted(self._triggers.keys(), reverse=True)]:
for trigger in triggers:
self._sorted_triggers.append(trigger)
self.sorted = True |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'log_message'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '7', 'type': 'block', 'children': ['8', '36', '44', '56']},{'id': '8', 'type': 'if_statement', 'children': ['9', '14', '21']},{'id': '9', 'type': 'call', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '11', 'type': 'argument_list', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'SeshetUser'},{'id': '14', 'type': 'block', 'children': ['15']},{'id': '15', 'type': 'expression_statement', 'children': ['16']},{'id': '16', 'type': 'assignment', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'nick'},{'id': '21', 'type': 'elif_clause', 'children': ['22', '28']},{'id': '22', 'type': 'not_operator', 'children': ['23']},{'id': '23', 'type': 'call', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'IRCstr'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'IRCstr'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'datetime'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'utcnow'},{'id': '43', 'type': 'argument_list', 'children': []},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'call', 'children': ['46', '51']},{'id': '46', 'type': 'attribute', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'message_log'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'tuple', 'children': ['53', '54', '55']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'time'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'user'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'message'},{'id': '56', 'type': 'while_statement', 'children': ['57', '67']},{'id': '57', 'type': 'comparison_operator', 'children': ['58', '64'], 'value': '>'},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'message_log'},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '66', 'type': 'identifier', 'children': [], 'value': '_log_size'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'delete_statement', 'children': ['69']},{'id': '69', 'type': 'subscript', 'children': ['70', '73']},{'id': '70', 'type': 'attribute', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'message_log'},{'id': '73', 'type': 'integer', 'children': [], 'value': '0'} | def log_message(self, user, message):
if isinstance(user, SeshetUser):
user = user.nick
elif not isinstance(user, IRCstr):
user = IRCstr(user)
time = datetime.utcnow()
self.message_log.append((time, user, message))
while len(self.message_log) > self._log_size:
del self.message_log[0] |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '22']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_item'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13', '16', '19']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'icon'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '15', 'type': 'None', 'children': []},{'id': '16', 'type': 'default_parameter', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'permission'},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'default_parameter', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'active_regex'},{'id': '21', 'type': 'None', 'children': []},{'id': '22', 'type': 'block', 'children': ['23', '40', '46', '50', '127', '140', '157']},{'id': '23', 'type': 'if_statement', 'children': ['24', '29']},{'id': '24', 'type': 'comparison_operator', 'children': ['25', '28'], 'value': 'is'},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '28', 'type': 'None', 'children': []},{'id': '29', 'type': 'block', 'children': ['30']},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '35', 'type': 'call', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'MenuItem'},{'id': '37', 'type': 'argument_list', 'children': ['38', '39']},{'id': '38', 'type': 'string', 'children': [], 'value': "'ROOT'"},{'id': '39', 'type': 'string', 'children': [], 'value': "'ROOT'"},{'id': '40', 'type': 'expression_statement', 'children': ['41']},{'id': '41', 'type': 'assignment', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'current_path'},{'id': '49', 'type': 'string', 'children': [], 'value': "''"},{'id': '50', 'type': 'for_statement', 'children': ['51', '52', '63']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '52', 'type': 'subscript', 'children': ['53', '59']},{'id': '53', 'type': 'call', 'children': ['54', '57']},{'id': '54', 'type': 'attribute', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '57', 'type': 'argument_list', 'children': ['58']},{'id': '58', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '59', 'type': 'slice', 'children': ['60', '61']},{'id': '60', 'type': 'colon', 'children': []},{'id': '61', 'type': 'unary_operator', 'children': ['62'], 'value': '-'},{'id': '62', 'type': 'integer', 'children': [], 'value': '1'},{'id': '63', 'type': 'block', 'children': ['64', '69', '86', '95', '123']},{'id': '64', 'type': 'if_statement', 'children': ['65', '67']},{'id': '65', 'type': 'not_operator', 'children': ['66']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '67', 'type': 'block', 'children': ['68']},{'id': '68', 'type': 'continue_statement', 'children': []},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'current_path'},{'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '+'},{'id': '73', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '74', 'type': 'call', 'children': ['75', '84']},{'id': '75', 'type': 'attribute', 'children': ['76', '83']},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'string', 'children': [], 'value': "'{}/{}'"},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '80', 'type': 'argument_list', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'current_path'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '84', 'type': 'argument_list', 'children': ['85']},{'id': '85', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '86', 'type': 'expression_statement', 'children': ['87']},{'id': '87', 'type': 'assignment', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'new_root'},{'id': '89', 'type': 'call', 'children': ['90', '93']},{'id': '90', 'type': 'attribute', 'children': ['91', '92']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'child_by_code'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '95', 'type': 'if_statement', 'children': ['96', '98']},{'id': '96', 'type': 'not_operator', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'new_root'},{'id': '98', 'type': 'block', 'children': ['99', '116']},{'id': '99', 'type': 'expression_statement', 'children': ['100']},{'id': '100', 'type': 'assignment', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'new_root'},{'id': '102', 'type': 'call', 'children': ['103', '104']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'MenuItem'},{'id': '104', 'type': 'argument_list', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'current_path'},{'id': '106', 'type': 'keyword_argument', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '108', 'type': 'call', 'children': ['109', '115']},{'id': '109', 'type': 'attribute', 'children': ['110', '114']},{'id': '110', 'type': 'call', 'children': ['111', '112']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '112', 'type': 'argument_list', 'children': ['113']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'node'},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'capitalize'},{'id': '115', 'type': 'argument_list', 'children': []},{'id': '116', 'type': 'expression_statement', 'children': ['117']},{'id': '117', 'type': 'call', 'children': ['118', '121']},{'id': '118', 'type': 'attribute', 'children': ['119', '120']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'add_child'},{'id': '121', 'type': 'argument_list', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'new_root'},{'id': '123', 'type': 'expression_statement', 'children': ['124']},{'id': '124', 'type': 'assignment', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'new_root'},{'id': '127', 'type': 'expression_statement', 'children': ['128']},{'id': '128', 'type': 'assignment', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'new_item'},{'id': '130', 'type': 'call', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'MenuItem'},{'id': '132', 'type': 'argument_list', 'children': ['133', '134', '135', '136', '137', '138', '139']},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'icon'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'url'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'order'},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'permission'},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'active_regex'},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'current_item'},{'id': '143', 'type': 'call', 'children': ['144', '147']},{'id': '144', 'type': 'attribute', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'child_by_code'},{'id': '147', 'type': 'argument_list', 'children': ['148']},{'id': '148', 'type': 'subscript', 'children': ['149', '155']},{'id': '149', 'type': 'call', 'children': ['150', '153']},{'id': '150', 'type': 'attribute', 'children': ['151', '152']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'path'},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '153', 'type': 'argument_list', 'children': ['154']},{'id': '154', 'type': 'string', 'children': [], 'value': "'/'"},{'id': '155', 'type': 'unary_operator', 'children': ['156'], 'value': '-'},{'id': '156', 'type': 'integer', 'children': [], 'value': '1'},{'id': '157', 'type': 'if_statement', 'children': ['158', '159', '167']},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'current_item'},{'id': '159', 'type': 'block', 'children': ['160']},{'id': '160', 'type': 'expression_statement', 'children': ['161']},{'id': '161', 'type': 'call', 'children': ['162', '165']},{'id': '162', 'type': 'attribute', 'children': ['163', '164']},{'id': '163', 'type': 'identifier', 'children': [], 'value': 'current_item'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'merge'},{'id': '165', 'type': 'argument_list', 'children': ['166']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'new_item'},{'id': '167', 'type': 'else_clause', 'children': ['168']},{'id': '168', 'type': 'block', 'children': ['169']},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'call', 'children': ['171', '174']},{'id': '171', 'type': 'attribute', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'root_item'},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'add_child'},{'id': '174', 'type': 'argument_list', 'children': ['175']},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'new_item'} | def add_item(self, path, name, icon=None, url=None, order=None, permission=None, active_regex=None):
if self.root_item is None:
self.root_item = MenuItem('ROOT', 'ROOT')
root_item = self.root_item
current_path = ''
for node in path.split('/')[:-1]:
if not node:
continue
current_path = '/' + '{}/{}'.format(current_path, node).strip('/')
new_root = root_item.child_by_code(node)
if not new_root:
new_root = MenuItem(current_path, name=str(node).capitalize())
root_item.add_child(new_root)
root_item = new_root
new_item = MenuItem(path, name, icon, url, order, permission, active_regex)
current_item = root_item.child_by_code(path.split('/')[-1])
if current_item:
current_item.merge(new_item)
else:
root_item.add_child(new_item) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'assist'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'project_path'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'position'},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'filename'},{'id': '9', 'type': 'block', 'children': ['10']},{'id': '10', 'type': 'return_statement', 'children': ['11']},{'id': '11', 'type': 'call', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '14', 'type': 'identifier', 'children': [], 'value': '_call'},{'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '19', '20']},{'id': '16', 'type': 'string', 'children': [], 'value': "'assist'"},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'project_path'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'source'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'position'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'filename'} | def assist(self, project_path, source, position, filename):
return self._call('assist', project_path, source, position, filename) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sorted_key_list'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '18', '41', '51']},{'id': '6', 'type': 'if_statement', 'children': ['7', '11']},{'id': '7', 'type': 'not_operator', 'children': ['8']},{'id': '8', 'type': 'attribute', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'is_baked'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '17']},{'id': '14', 'type': 'attribute', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'bake'},{'id': '17', 'type': 'argument_list', 'children': []},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'key_value_tuple'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '23', 'type': 'argument_list', 'children': ['24', '31']},{'id': '24', 'type': 'call', 'children': ['25', '30']},{'id': '25', 'type': 'attribute', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'dct'},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'items'},{'id': '30', 'type': 'argument_list', 'children': []},{'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '33', 'type': 'lambda', 'children': ['34', '36']},{'id': '34', 'type': 'lambda_parameters', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '36', 'type': 'subscript', 'children': ['37', '40']},{'id': '37', 'type': 'subscript', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '39', 'type': 'integer', 'children': [], 'value': '1'},{'id': '40', 'type': 'string', 'children': [], 'value': "'__abs_time__'"},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'skl'},{'id': '44', 'type': 'list_comprehension', 'children': ['45', '48']},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '47', 'type': 'integer', 'children': [], 'value': '0'},{'id': '48', 'type': 'for_in_clause', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'k'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'key_value_tuple'},{'id': '51', 'type': 'return_statement', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'skl'} | def sorted_key_list(self):
if not self.is_baked:
self.bake()
key_value_tuple = sorted(self.dct.items(),
key=lambda x: x[1]['__abs_time__'])
skl = [k[0] for k in key_value_tuple]
return skl |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_used_key_frames'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '16', '20', '48']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'assignment', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'skl'},{'id': '9', 'type': 'call', 'children': ['10', '15']},{'id': '10', 'type': 'attribute', 'children': ['11', '14']},{'id': '11', 'type': 'attribute', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'key_frame_list'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'sorted_key_list'},{'id': '15', 'type': 'argument_list', 'children': []},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'used_key_frames'},{'id': '19', 'type': 'list', 'children': [], 'value': '[]'},{'id': '20', 'type': 'for_statement', 'children': ['21', '22', '23']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'kf'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'skl'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'if_statement', 'children': ['25', '32']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '27'], 'value': 'in'},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'kf'},{'id': '27', 'type': 'subscript', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'dct'},{'id': '31', 'type': 'string', 'children': [], 'value': "'keys'"},{'id': '32', 'type': 'block', 'children': ['33']},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'call', 'children': ['35', '38']},{'id': '35', 'type': 'attribute', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'used_key_frames'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '38', 'type': 'argument_list', 'children': ['39']},{'id': '39', 'type': 'tuple', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'kf'},{'id': '41', 'type': 'subscript', 'children': ['42', '47']},{'id': '42', 'type': 'subscript', 'children': ['43', '46']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'dct'},{'id': '46', 'type': 'string', 'children': [], 'value': "'keys'"},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'kf'},{'id': '48', 'type': 'return_statement', 'children': ['49']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'used_key_frames'} | def get_used_key_frames(self):
skl = self.key_frame_list.sorted_key_list()
used_key_frames = []
for kf in skl:
if kf in self.dct['keys']:
used_key_frames.append((kf, self.dct['keys'][kf]))
return used_key_frames |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'flds_firstsort'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '5', 'type': 'block', 'children': ['6', '8', '29', '47']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "'''\n Perform a lexsort and return the sort indices and shape as a tuple.\n '''"},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '11', 'type': 'list_comprehension', 'children': ['12', '23']},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '14', 'type': 'argument_list', 'children': ['15']},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'unique'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'subscript', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '23', 'type': 'for_in_clause', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '25', 'type': 'list', 'children': ['26', '27', '28'], 'value': "['xs', 'ys', 'zs']"},{'id': '26', 'type': 'string', 'children': [], 'value': "'xs'"},{'id': '27', 'type': 'string', 'children': [], 'value': "'ys'"},{'id': '28', 'type': 'string', 'children': [], 'value': "'zs'"},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'assignment', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'si'},{'id': '32', 'type': 'call', 'children': ['33', '36']},{'id': '33', 'type': 'attribute', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'lexsort'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'tuple', 'children': ['38', '41', '44']},{'id': '38', 'type': 'subscript', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '40', 'type': 'string', 'children': [], 'value': "'z'"},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '43', 'type': 'string', 'children': [], 'value': "'y'"},{'id': '44', 'type': 'subscript', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '46', 'type': 'string', 'children': [], 'value': "'x'"},{'id': '47', 'type': 'return_statement', 'children': ['48']},{'id': '48', 'type': 'expression_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'si'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'shape'} | def flds_firstsort(d):
'''
Perform a lexsort and return the sort indices and shape as a tuple.
'''
shape = [ len( np.unique(d[l]) )
for l in ['xs', 'ys', 'zs'] ];
si = np.lexsort((d['z'],d['y'],d['x']));
return si,shape; |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'flds_sort'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '6', 'type': 'block', 'children': ['7', '9', '31', '37', '69']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'string', 'children': [], 'value': "'''\n Sort based on position. Sort with s as a tuple of the sort\n indices and shape from first sort.\n Parameters:\n -----------\n d -- the flds/sclr data\n s -- (si, shape) sorting and shaping data from firstsort.\n '''"},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'labels'},{'id': '12', 'type': 'list_comprehension', 'children': ['13', '14', '21']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '14', 'type': 'for_in_clause', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '16', 'type': 'call', 'children': ['17', '20']},{'id': '17', 'type': 'attribute', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'keys'},{'id': '20', 'type': 'argument_list', 'children': []},{'id': '21', 'type': 'if_clause', 'children': ['22']},{'id': '22', 'type': 'comparison_operator', 'children': ['23', '24'], 'value': 'not'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '24', 'type': 'list', 'children': ['25', '26', '27', '28', '29', '30'], 'value': "['t', 'xs', 'ys', 'zs', 'fd', 'sd']"},{'id': '25', 'type': 'string', 'children': [], 'value': "'t'"},{'id': '26', 'type': 'string', 'children': [], 'value': "'xs'"},{'id': '27', 'type': 'string', 'children': [], 'value': "'ys'"},{'id': '28', 'type': 'string', 'children': [], 'value': "'zs'"},{'id': '29', 'type': 'string', 'children': [], 'value': "'fd'"},{'id': '30', 'type': 'string', 'children': [], 'value': "'sd'"},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '36']},{'id': '33', 'type': 'pattern_list', 'children': ['34', '35']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'si'},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '37', 'type': 'for_statement', 'children': ['38', '39', '40']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'labels'},{'id': '40', 'type': 'block', 'children': ['41', '56']},{'id': '41', 'type': 'expression_statement', 'children': ['42']},{'id': '42', 'type': 'assignment', 'children': ['43', '46']},{'id': '43', 'type': 'subscript', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '46', 'type': 'call', 'children': ['47', '54']},{'id': '47', 'type': 'attribute', 'children': ['48', '53']},{'id': '48', 'type': 'subscript', 'children': ['49', '52']},{'id': '49', 'type': 'subscript', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'si'},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'reshape'},{'id': '54', 'type': 'argument_list', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'shape'},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '61']},{'id': '58', 'type': 'subscript', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'np'},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'squeeze'},{'id': '65', 'type': 'argument_list', 'children': ['66']},{'id': '66', 'type': 'subscript', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'l'},{'id': '69', 'type': 'return_statement', 'children': ['70']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'd'} | def flds_sort(d,s):
'''
Sort based on position. Sort with s as a tuple of the sort
indices and shape from first sort.
Parameters:
-----------
d -- the flds/sclr data
s -- (si, shape) sorting and shaping data from firstsort.
'''
labels = [ key for key in d.keys()
if key not in ['t', 'xs', 'ys', 'zs', 'fd', 'sd'] ];
si,shape = s;
for l in labels:
d[l] = d[l][si].reshape(shape);
d[l] = np.squeeze(d[l]);
return d; |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'read'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '5', 'type': 'dictionary_splat_pattern', 'children': ['6']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '7', 'type': 'block', 'children': ['8', '10', '37', '50', '324']},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'string', 'children': [], 'value': "'''\n Reads an lsp output file and returns a raw dump of data,\n sectioned into quantities either as an dictionary or a typed numpy array.\n Parameters:\n -----------\n fname -- filename of thing to read\n Keyword Arguments:\n ------------------\n vprint -- Verbose printer. Used in scripts\n override -- (type, start) => A tuple of a dump type and a place to start\n in the passed file, useful to attempting to read semicorrupted\n files.\n gzip -- Read as a gzip file.\n flds/sclr Specific Arguments:\n -----------------------------\n var -- list of quantities to be read. For fields, this can consist\n of strings that include vector components, e.g., 'Ex'. If \n None (default), read all quantities.\n keep_edges -- If set to truthy, then don't remove the edges from domains before\n concatenation and don't reshape the flds data.\n sort -- If not None, sort using these indices, useful for avoiding\n resorting. If True and not an ndarray, just sort.\n first_sort -- If truthy, sort, and return the sort data for future flds\n that should have the same shape.\n keep_xs -- Keep the xs's, that is, the grid information. Usually redundant\n with x,y,z returned.\n return_array -- If set to truthy, then try to return a numpy array with a dtype.\n Requires of course that the quantities have the same shape.\n '''"},{'id': '10', 'type': 'if_statement', 'children': ['11', '22']},{'id': '11', 'type': 'boolean_operator', 'children': ['12', '17'], 'value': 'and'},{'id': '12', 'type': 'call', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '14', 'type': 'argument_list', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '16', 'type': 'string', 'children': [], 'value': "'gzip'"},{'id': '17', 'type': 'comparison_operator', 'children': ['18', '21'], 'value': '=='},{'id': '18', 'type': 'subscript', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '20', 'type': 'string', 'children': [], 'value': "'gzip'"},{'id': '21', 'type': 'string', 'children': [], 'value': "'guess'"},{'id': '22', 'type': 'block', 'children': ['23']},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '28']},{'id': '25', 'type': 'subscript', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '27', 'type': 'string', 'children': [], 'value': "'gzip'"},{'id': '28', 'type': 'comparison_operator', 'children': ['29', '36'], 'value': 'is'},{'id': '29', 'type': 'call', 'children': ['30', '33']},{'id': '30', 'type': 'attribute', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 're'},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'search'},{'id': '33', 'type': 'argument_list', 'children': ['34', '35']},{'id': '34', 'type': 'string', 'children': [], 'value': "r'\\.gz$'"},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '36', 'type': 'None', 'children': []},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'openf'},{'id': '40', 'type': 'conditional_expression', 'children': ['41', '44', '49'], 'value': 'if'},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'gzip'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '44', 'type': 'call', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '46', 'type': 'argument_list', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '48', 'type': 'string', 'children': [], 'value': "'gzip'"},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '50', 'type': 'with_statement', 'children': ['51', '61']},{'id': '51', 'type': 'with_clause', 'children': ['52']},{'id': '52', 'type': 'with_item', 'children': ['53']},{'id': '53', 'type': 'as_pattern', 'children': ['54', '59']},{'id': '54', 'type': 'call', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'openf'},{'id': '56', 'type': 'argument_list', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'fname'},{'id': '58', 'type': 'string', 'children': [], 'value': "'rb'"},{'id': '59', 'type': 'as_pattern_target', 'children': ['60']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '61', 'type': 'block', 'children': ['62', '120', '136', '223', '304']},{'id': '62', 'type': 'if_statement', 'children': ['63', '68', '111']},{'id': '63', 'type': 'call', 'children': ['64', '65']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '67', 'type': 'string', 'children': [], 'value': "'override'"},{'id': '68', 'type': 'block', 'children': ['69', '77', '84', '91']},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '74']},{'id': '71', 'type': 'pattern_list', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'dump'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '74', 'type': 'subscript', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '76', 'type': 'string', 'children': [], 'value': "'override'"},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'call', 'children': ['79', '82']},{'id': '79', 'type': 'attribute', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'seek'},{'id': '82', 'type': 'argument_list', 'children': ['83']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'assignment', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '87', 'type': 'dictionary', 'children': ['88']},{'id': '88', 'type': 'pair', 'children': ['89', '90']},{'id': '89', 'type': 'string', 'children': [], 'value': "'dump_type'"},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'dump'},{'id': '91', 'type': 'if_statement', 'children': ['92', '105']},{'id': '92', 'type': 'boolean_operator', 'children': ['93', '99'], 'value': 'and'},{'id': '93', 'type': 'not_operator', 'children': ['94']},{'id': '94', 'type': 'call', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '96', 'type': 'argument_list', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '98', 'type': 'string', 'children': [], 'value': "'var'"},{'id': '99', 'type': 'comparison_operator', 'children': ['100', '101', '104'], 'value': '<='},{'id': '100', 'type': 'integer', 'children': [], 'value': '2'},{'id': '101', 'type': 'subscript', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '103', 'type': 'string', 'children': [], 'value': "'dump_type'"},{'id': '104', 'type': 'integer', 'children': [], 'value': '3'},{'id': '105', 'type': 'block', 'children': ['106']},{'id': '106', 'type': 'raise_statement', 'children': ['107']},{'id': '107', 'type': 'call', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '109', 'type': 'argument_list', 'children': ['110']},{'id': '110', 'type': 'string', 'children': [], 'value': '"If you want to force to read as a scalar, you need to supply the quantities"'},{'id': '111', 'type': 'else_clause', 'children': ['112']},{'id': '112', 'type': 'block', 'children': ['113']},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '116', 'type': 'call', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'get_header'},{'id': '118', 'type': 'argument_list', 'children': ['119']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '120', 'type': 'expression_statement', 'children': ['121']},{'id': '121', 'type': 'assignment', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'vprint'},{'id': '123', 'type': 'conditional_expression', 'children': ['124', '127', '132'], 'value': 'if'},{'id': '124', 'type': 'subscript', 'children': ['125', '126']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '126', 'type': 'string', 'children': [], 'value': "'vprint'"},{'id': '127', 'type': 'call', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '129', 'type': 'argument_list', 'children': ['130', '131']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '131', 'type': 'string', 'children': [], 'value': "'vprint'"},{'id': '132', 'type': 'lambda', 'children': ['133', '135']},{'id': '133', 'type': 'lambda_parameters', 'children': ['134']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 's'},{'id': '135', 'type': 'None', 'children': []},{'id': '136', 'type': 'if_statement', 'children': ['137', '143']},{'id': '137', 'type': 'comparison_operator', 'children': ['138', '139', '142'], 'value': '<='},{'id': '138', 'type': 'integer', 'children': [], 'value': '2'},{'id': '139', 'type': 'subscript', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '141', 'type': 'string', 'children': [], 'value': "'dump_type'"},{'id': '142', 'type': 'integer', 'children': [], 'value': '3'},{'id': '143', 'type': 'block', 'children': ['144', '172', '180', '188', '207', '215']},{'id': '144', 'type': 'if_statement', 'children': ['145', '151', '164']},{'id': '145', 'type': 'not_operator', 'children': ['146']},{'id': '146', 'type': 'call', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '148', 'type': 'argument_list', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '150', 'type': 'string', 'children': [], 'value': "'var'"},{'id': '151', 'type': 'block', 'children': ['152']},{'id': '152', 'type': 'expression_statement', 'children': ['153']},{'id': '153', 'type': 'assignment', 'children': ['154', '155']},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '155', 'type': 'list_comprehension', 'children': ['156', '159']},{'id': '156', 'type': 'subscript', 'children': ['157', '158']},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '158', 'type': 'integer', 'children': [], 'value': '0'},{'id': '159', 'type': 'for_in_clause', 'children': ['160', '161']},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '161', 'type': 'subscript', 'children': ['162', '163']},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '163', 'type': 'string', 'children': [], 'value': "'quantities'"},{'id': '164', 'type': 'else_clause', 'children': ['165']},{'id': '165', 'type': 'block', 'children': ['166']},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '169', 'type': 'subscript', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '171', 'type': 'string', 'children': [], 'value': "'var'"},{'id': '172', 'type': 'expression_statement', 'children': ['173']},{'id': '173', 'type': 'assignment', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'keep_edges'},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '177', 'type': 'argument_list', 'children': ['178', '179']},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '179', 'type': 'string', 'children': [], 'value': "'keep_edges'"},{'id': '180', 'type': 'expression_statement', 'children': ['181']},{'id': '181', 'type': 'assignment', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'first_sort'},{'id': '183', 'type': 'call', 'children': ['184', '185']},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '185', 'type': 'argument_list', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '187', 'type': 'string', 'children': [], 'value': "'first_sort'"},{'id': '188', 'type': 'if_statement', 'children': ['189', '194', '201']},{'id': '189', 'type': 'call', 'children': ['190', '191']},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '191', 'type': 'argument_list', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '193', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '194', 'type': 'block', 'children': ['195']},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'assignment', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '198', 'type': 'subscript', 'children': ['199', '200']},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '200', 'type': 'string', 'children': [], 'value': "'sort'"},{'id': '201', 'type': 'else_clause', 'children': ['202']},{'id': '202', 'type': 'block', 'children': ['203']},{'id': '203', 'type': 'expression_statement', 'children': ['204']},{'id': '204', 'type': 'assignment', 'children': ['205', '206']},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '206', 'type': 'None', 'children': []},{'id': '207', 'type': 'expression_statement', 'children': ['208']},{'id': '208', 'type': 'assignment', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'keep_xs'},{'id': '210', 'type': 'call', 'children': ['211', '212']},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '212', 'type': 'argument_list', 'children': ['213', '214']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '214', 'type': 'string', 'children': [], 'value': "'keep_xs'"},{'id': '215', 'type': 'expression_statement', 'children': ['216']},{'id': '216', 'type': 'assignment', 'children': ['217', '218']},{'id': '217', 'type': 'identifier', 'children': [], 'value': 'return_array'},{'id': '218', 'type': 'call', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'test'},{'id': '220', 'type': 'argument_list', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'kw'},{'id': '222', 'type': 'string', 'children': [], 'value': "'return_array'"},{'id': '223', 'type': 'expression_statement', 'children': ['224']},{'id': '224', 'type': 'assignment', 'children': ['225', '226']},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'readers'},{'id': '226', 'type': 'dictionary', 'children': ['227', '235', '260', '288', '296']},{'id': '227', 'type': 'pair', 'children': ['228', '229']},{'id': '228', 'type': 'integer', 'children': [], 'value': '1'},{'id': '229', 'type': 'lambda', 'children': ['230']},{'id': '230', 'type': 'call', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'read_particles'},{'id': '232', 'type': 'argument_list', 'children': ['233', '234']},{'id': '233', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '235', 'type': 'pair', 'children': ['236', '237']},{'id': '236', 'type': 'integer', 'children': [], 'value': '2'},{'id': '237', 'type': 'lambda', 'children': ['238']},{'id': '238', 'type': 'call', 'children': ['239', '240']},{'id': '239', 'type': 'identifier', 'children': [], 'value': 'read_flds'},{'id': '240', 'type': 'argument_list', 'children': ['241', '242', '243', '244', '245', '248', '251', '254', '257']},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '243', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'vprint'},{'id': '245', 'type': 'keyword_argument', 'children': ['246', '247']},{'id': '246', 'type': 'identifier', 'children': [], 'value': 'keep_edges'},{'id': '247', 'type': 'identifier', 'children': [], 'value': 'keep_edges'},{'id': '248', 'type': 'keyword_argument', 'children': ['249', '250']},{'id': '249', 'type': 'identifier', 'children': [], 'value': 'first_sort'},{'id': '250', 'type': 'identifier', 'children': [], 'value': 'first_sort'},{'id': '251', 'type': 'keyword_argument', 'children': ['252', '253']},{'id': '252', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '253', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '254', 'type': 'keyword_argument', 'children': ['255', '256']},{'id': '255', 'type': 'identifier', 'children': [], 'value': 'keep_xs'},{'id': '256', 'type': 'identifier', 'children': [], 'value': 'keep_xs'},{'id': '257', 'type': 'keyword_argument', 'children': ['258', '259']},{'id': '258', 'type': 'identifier', 'children': [], 'value': 'return_array'},{'id': '259', 'type': 'identifier', 'children': [], 'value': 'return_array'},{'id': '260', 'type': 'pair', 'children': ['261', '262']},{'id': '261', 'type': 'integer', 'children': [], 'value': '3'},{'id': '262', 'type': 'lambda', 'children': ['263']},{'id': '263', 'type': 'call', 'children': ['264', '265']},{'id': '264', 'type': 'identifier', 'children': [], 'value': 'read_flds'},{'id': '265', 'type': 'argument_list', 'children': ['266', '267', '268', '269', '270', '273', '276', '279', '282', '285']},{'id': '266', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '267', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '268', 'type': 'identifier', 'children': [], 'value': 'var'},{'id': '269', 'type': 'identifier', 'children': [], 'value': 'vprint'},{'id': '270', 'type': 'keyword_argument', 'children': ['271', '272']},{'id': '271', 'type': 'identifier', 'children': [], 'value': 'keep_edges'},{'id': '272', 'type': 'identifier', 'children': [], 'value': 'keep_edges'},{'id': '273', 'type': 'keyword_argument', 'children': ['274', '275']},{'id': '274', 'type': 'identifier', 'children': [], 'value': 'first_sort'},{'id': '275', 'type': 'identifier', 'children': [], 'value': 'first_sort'},{'id': '276', 'type': 'keyword_argument', 'children': ['277', '278']},{'id': '277', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '278', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '279', 'type': 'keyword_argument', 'children': ['280', '281']},{'id': '280', 'type': 'identifier', 'children': [], 'value': 'keep_xs'},{'id': '281', 'type': 'identifier', 'children': [], 'value': 'keep_xs'},{'id': '282', 'type': 'keyword_argument', 'children': ['283', '284']},{'id': '283', 'type': 'identifier', 'children': [], 'value': 'return_array'},{'id': '284', 'type': 'identifier', 'children': [], 'value': 'return_array'},{'id': '285', 'type': 'keyword_argument', 'children': ['286', '287']},{'id': '286', 'type': 'identifier', 'children': [], 'value': 'vector'},{'id': '287', 'type': 'False', 'children': []},{'id': '288', 'type': 'pair', 'children': ['289', '290']},{'id': '289', 'type': 'integer', 'children': [], 'value': '6'},{'id': '290', 'type': 'lambda', 'children': ['291']},{'id': '291', 'type': 'call', 'children': ['292', '293']},{'id': '292', 'type': 'identifier', 'children': [], 'value': 'read_movie'},{'id': '293', 'type': 'argument_list', 'children': ['294', '295']},{'id': '294', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '295', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '296', 'type': 'pair', 'children': ['297', '298']},{'id': '297', 'type': 'integer', 'children': [], 'value': '10'},{'id': '298', 'type': 'lambda', 'children': ['299']},{'id': '299', 'type': 'call', 'children': ['300', '301']},{'id': '300', 'type': 'identifier', 'children': [], 'value': 'read_pext'},{'id': '301', 'type': 'argument_list', 'children': ['302', '303']},{'id': '302', 'type': 'identifier', 'children': [], 'value': 'file'},{'id': '303', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '304', 'type': 'try_statement', 'children': ['305', '316']},{'id': '305', 'type': 'block', 'children': ['306']},{'id': '306', 'type': 'expression_statement', 'children': ['307']},{'id': '307', 'type': 'assignment', 'children': ['308', '309']},{'id': '308', 'type': 'identifier', 'children': [], 'value': 'd'},{'id': '309', 'type': 'call', 'children': ['310', '315']},{'id': '310', 'type': 'subscript', 'children': ['311', '312']},{'id': '311', 'type': 'identifier', 'children': [], 'value': 'readers'},{'id': '312', 'type': 'subscript', 'children': ['313', '314']},{'id': '313', 'type': 'identifier', 'children': [], 'value': 'header'},{'id': '314', 'type': 'string', 'children': [], 'value': "'dump_type'"},{'id': '315', 'type': 'argument_list', 'children': []},{'id': '316', 'type': 'except_clause', 'children': ['317', '318']},{'id': '317', 'type': 'identifier', 'children': [], 'value': 'KeyError'},{'id': '318', 'type': 'block', 'children': ['319']},{'id': '319', 'type': 'raise_statement', 'children': ['320']},{'id': '320', 'type': 'call', 'children': ['321', '322']},{'id': '321', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'},{'id': '322', 'type': 'argument_list', 'children': ['323']},{'id': '323', 'type': 'string', 'children': [], 'value': '"Other file types not implemented yet!"'},{'id': '324', 'type': 'return_statement', 'children': ['325']},{'id': '325', 'type': 'identifier', 'children': [], 'value': 'd'} | def read(fname,**kw):
'''
Reads an lsp output file and returns a raw dump of data,
sectioned into quantities either as an dictionary or a typed numpy array.
Parameters:
-----------
fname -- filename of thing to read
Keyword Arguments:
------------------
vprint -- Verbose printer. Used in scripts
override -- (type, start) => A tuple of a dump type and a place to start
in the passed file, useful to attempting to read semicorrupted
files.
gzip -- Read as a gzip file.
flds/sclr Specific Arguments:
-----------------------------
var -- list of quantities to be read. For fields, this can consist
of strings that include vector components, e.g., 'Ex'. If
None (default), read all quantities.
keep_edges -- If set to truthy, then don't remove the edges from domains before
concatenation and don't reshape the flds data.
sort -- If not None, sort using these indices, useful for avoiding
resorting. If True and not an ndarray, just sort.
first_sort -- If truthy, sort, and return the sort data for future flds
that should have the same shape.
keep_xs -- Keep the xs's, that is, the grid information. Usually redundant
with x,y,z returned.
return_array -- If set to truthy, then try to return a numpy array with a dtype.
Requires of course that the quantities have the same shape.
'''
if test(kw,'gzip') and kw['gzip'] == 'guess':
kw['gzip'] = re.search(r'\.gz$', fname) is not None;
openf = gzip.open if test(kw, 'gzip') else open;
with openf(fname,'rb') as file:
if test(kw,'override'):
dump, start = kw['override'];
file.seek(start);
header = {'dump_type': dump};
if not test(kw, 'var') and 2 <= header['dump_type'] <= 3 :
raise ValueError(
"If you want to force to read as a scalar, you need to supply the quantities"
);
else:
header = get_header(file);
vprint = kw['vprint'] if test(kw, 'vprint') else lambda s: None;
if 2 <= header['dump_type'] <= 3 :
if not test(kw, 'var'):
var=[i[0] for i in header['quantities']];
else:
var=kw['var'];
keep_edges = test(kw, 'keep_edges');
first_sort = test(kw, 'first_sort');
if test(kw,'sort'):
sort = kw['sort']
else:
sort = None;
keep_xs = test(kw, 'keep_xs');
return_array = test(kw, 'return_array');
readers = {
1: lambda: read_particles(file, header),
2: lambda: read_flds(
file,header,var,vprint,
keep_edges=keep_edges,
first_sort=first_sort,
sort=sort,
keep_xs=keep_xs,
return_array=return_array),
3: lambda: read_flds(
file,header,var, vprint,
keep_edges=keep_edges,
first_sort=first_sort,
sort=sort,
keep_xs=keep_xs,
return_array=return_array,
vector=False),
6: lambda: read_movie(file, header),
10:lambda: read_pext(file,header)
};
try:
d = readers[header['dump_type']]();
except KeyError:
raise NotImplementedError("Other file types not implemented yet!");
return d; |
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['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'bam'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '17', 'type': 'block', 'children': ['18']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'bam'},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'pysam'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'AlignmentFile'},{'id': '25', 'type': 'argument_list', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'bam'},{'id': '27', 'type': 'string', 'children': [], 'value': "'rb'"},{'id': '28', 'type': 'if_statement', 'children': ['29', '35', '122']},{'id': '29', 'type': 'comparison_operator', 'children': ['30', '34'], 'value': 'is'},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '32', 'type': 'argument_list', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'region'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '35', 'type': 'block', 'children': ['36', '43', '74', '81', '88', '108']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '39', 'type': 'call', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'parse_region'},{'id': '41', 'type': 'argument_list', 'children': ['42']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'region'},{'id': '43', 'type': 'if_statement', 'children': ['44', '50', '58']},{'id': '44', 'type': 'comparison_operator', 'children': ['45', '49'], 'value': '=='},{'id': '45', 'type': 'call', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '49', 'type': 'integer', 'children': [], 'value': '3'},{'id': '50', 'type': 'block', 'children': ['51']},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '57']},{'id': '53', 'type': 'pattern_list', 'children': ['54', '55', '56']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '58', 'type': 'elif_clause', 'children': ['59', '65']},{'id': '59', 'type': 'comparison_operator', 'children': ['60', '64'], 'value': '=='},{'id': '60', 'type': 'call', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '62', 'type': 'argument_list', 'children': ['63']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '64', 'type': 'integer', 'children': [], 'value': '4'},{'id': '65', 'type': 'block', 'children': ['66']},{'id': '66', 'type': 'expression_statement', 'children': ['67']},{'id': '67', 'type': 'assignment', 'children': ['68', '73']},{'id': '68', 'type': 'pattern_list', 'children': ['69', '70', '71', '72']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '74', 'type': 'expression_statement', 'children': ['75']},{'id': '75', 'type': 'assignment', 'children': 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'list_comprehension', 'children': ['92', '99']},{'id': '92', 'type': 'call', 'children': ['93', '96']},{'id': '93', 'type': 'attribute', 'children': ['94', '95']},{'id': '94', 'type': 'string', 'children': [], 'value': "'{}:{}'"},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '96', 'type': 'argument_list', 'children': ['97', '98']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '99', 'type': 'for_in_clause', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '101', 'type': 'call', 'children': ['102', '103']},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'range'},{'id': '103', 'type': 'argument_list', 'children': ['104', '105']},{'id': '104', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '105', 'type': 'binary_operator', 'children': ['106', '107'], 'value': '+'},{'id': '106', 'type': 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'type': 'subscript', 'children': ['418', '419']},{'id': '418', 'type': 'identifier', 'children': [], 'value': 'singles'},{'id': '419', 'type': 'string', 'children': [], 'value': "'R2'"},{'id': '420', 'type': 'identifier', 'children': [], 'value': 'value_counts'},{'id': '421', 'type': 'argument_list', 'children': []},{'id': '422', 'type': 'expression_statement', 'children': ['423']},{'id': '423', 'type': 'assignment', 'children': ['424', '425']},{'id': '424', 'type': 'identifier', 'children': [], 'value': 'doubles'},{'id': '425', 'type': 'subscript', 'children': ['426', '427']},{'id': '426', 'type': 'identifier', 'children': [], 'value': 'doubles'},{'id': '427', 'type': 'comparison_operator', 'children': ['428', '431'], 'value': '=='},{'id': '428', 'type': 'attribute', 'children': ['429', '430']},{'id': '429', 'type': 'identifier', 'children': [], 'value': 'doubles'},{'id': '430', 'type': 'identifier', 'children': [], 'value': 'R1'},{'id': '431', 'type': 'attribute', 'children': ['432', '433']},{'id': '432', 'type': 'identifier', 'children': [], 'value': 'doubles'},{'id': '433', 'type': 'identifier', 'children': [], 'value': 'R2'},{'id': '434', 'type': 'expression_statement', 'children': ['435']},{'id': '435', 'type': 'call', 'children': ['436', '439']},{'id': '436', 'type': 'attribute', 'children': ['437', '438']},{'id': '437', 'type': 'identifier', 'children': [], 'value': 'vcs'},{'id': '438', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '439', 'type': 'argument_list', 'children': ['440']},{'id': '440', 'type': 'call', 'children': ['441', '446']},{'id': '441', 'type': 'attribute', 'children': ['442', '445']},{'id': '442', 'type': 'attribute', 'children': ['443', '444']},{'id': '443', 'type': 'identifier', 'children': [], 'value': 'doubles'},{'id': '444', 'type': 'identifier', 'children': [], 'value': 'R1'},{'id': '445', 'type': 'identifier', 'children': [], 'value': 'value_counts'},{'id': '446', 'type': 'argument_list', 'children': []},{'id': '447', 'type': 'for_statement', 'children': ['448', '449', '450']},{'id': '448', 'type': 'identifier', 'children': [], 'value': 'vc'},{'id': '449', 'type': 'identifier', 'children': [], 'value': 'vcs'},{'id': '450', 'type': 'block', 'children': ['451']},{'id': '451', 'type': 'expression_statement', 'children': ['452']},{'id': '452', 'type': 'augmented_assignment', 'children': ['453', '467'], 'value': '+='},{'id': '453', 'type': 'subscript', 'children': ['454', '457', '464']},{'id': '454', 'type': 'attribute', 'children': ['455', '456']},{'id': '455', 'type': 'identifier', 'children': [], 'value': 'counts'},{'id': '456', 'type': 'identifier', 'children': [], 'value': 'ix'},{'id': '457', 'type': 'call', 'children': ['458', '461']},{'id': '458', 'type': 'attribute', 'children': ['459', '460']},{'id': '459', 'type': 'string', 'children': [], 'value': "'{}:{}'"},{'id': '460', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '461', 'type': 'argument_list', 'children': ['462', '463']},{'id': '462', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '463', 'type': 'identifier', 'children': [], 'value': 'pos'},{'id': '464', 'type': 'attribute', 'children': ['465', '466']},{'id': '465', 'type': 'identifier', 'children': [], 'value': 'vc'},{'id': '466', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '467', 'type': 'identifier', 'children': [], 'value': 'vc'},{'id': '468', 'type': 'return_statement', 'children': ['469']},{'id': '469', 'type': 'identifier', 'children': [], 'value': 'counts'} | def get_region_nt_counts(region, bam, stranded=False):
if type(bam) == str:
bam = pysam.AlignmentFile(bam, 'rb')
if type(region) is str:
r = parse_region(region)
if len(r) == 3:
chrom, start, end = r
elif len(r) == 4:
chrom, start, end, strand = r
start = int(start)
end = int(end)
ind = ['{}:{}'.format(chrom, x) for
x in range(start, end + 1)]
pp = bam.pileup(region=region, truncate=True)
elif type(region) is (list or tuple):
chrom, start, end = region
ind = ['{}:{}'.format(chrom, x) for
x in range(int(start) + 1, int(end) + 1)]
pp = bam.pileup(chrom, start, end, truncate=True)
cols = ['A', 'T', 'C', 'G', 'N']
if stranded:
cols = ['{}+'.format(x) for x in cols] + ['{}-'.format(x) for x in cols]
counts = pd.DataFrame(0, index=ind, columns=cols)
for pc in pp:
pos = pc.reference_pos + 1
r1_qnames = []
r1_nts = []
r2_qnames = []
r2_nts = []
for pr in pc.pileups:
qnames = [r1_qnames, r2_qnames][pr.alignment.is_read2]
nts = [r1_nts, r2_nts][pr.alignment.is_read2]
nt = _pos_nt(pr, pc.reference_pos, stranded)
if nt:
qnames.append(pr.alignment.qname)
nts.append(nt)
r1 = pd.Series(r1_nts, index=r1_qnames)
r2 = pd.Series(r2_nts, index=r2_qnames)
df = pd.DataFrame([r1, r2], index=['R1', 'R2']).T
singles = df[df.isnull().sum(axis=1) == 1]
doubles = df.dropna()
vcs = []
vcs.append(singles['R1'].value_counts())
vcs.append(singles['R2'].value_counts())
doubles = doubles[doubles.R1 == doubles.R2]
vcs.append(doubles.R1.value_counts())
for vc in vcs:
counts.ix['{}:{}'.format(chrom, pos), vc.index] += vc
return counts |
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'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'pbt'},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'BedTool'},{'id': '96', 'type': 'argument_list', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'positions'},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'to_dataframe'},{'id': '99', 'type': 'argument_list', 'children': []},{'id': '100', 'type': 'elif_clause', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'vcf'},{'id': '102', 'type': 'block', 'children': ['103', '108', '115', '128', '136', '146']},{'id': '103', 'type': 'import_from_statement', 'children': ['104', '106']},{'id': '104', 'type': 'dotted_name', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'variants'},{'id': '106', 'type': 'dotted_name', 'children': ['107']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'vcf_as_df'},{'id': '108', 'type': 'expression_statement', 'children': ['109']},{'id': '109', 'type': 'assignment', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'tdf'},{'id': '111', 'type': 'call', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'vcf_as_df'},{'id': '113', 'type': 'argument_list', 'children': ['114']},{'id': '114', 'type': 'identifier', 'children': [], 'value': 'positions'},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '118', 'type': 'call', 'children': ['119', '122']},{'id': '119', 'type': 'attribute', 'children': ['120', '121']},{'id': '120', 'type': 'identifier', 'children': [], 'value': 'pd'},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'DataFrame'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 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'type': 'subscript', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '140', 'type': 'string', 'children': [], 'value': "'start'"},{'id': '141', 'type': 'binary_operator', 'children': ['142', '145'], 'value': '-'},{'id': '142', 'type': 'attribute', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'tdf'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'POS'},{'id': '145', 'type': 'integer', 'children': [], 'value': '1'},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'assignment', 'children': ['148', '151']},{'id': '148', 'type': 'subscript', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '150', 'type': 'string', 'children': [], 'value': "'end'"},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'tdf'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'POS'},{'id': '154', 'type': 'expression_statement', 'children': ['155']},{'id': '155', 'type': 'assignment', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '157', 'type': 'list', 'children': [], 'value': '[]'},{'id': '158', 'type': 'for_statement', 'children': ['159', '160', '163']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '163', 'type': 'block', 'children': ['164', '186']},{'id': '164', 'type': 'expression_statement', 'children': ['165']},{'id': '165', 'type': 'assignment', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'region'},{'id': '167', 'type': 'list', 'children': ['168', '174', '180'], 'value': "[df.ix[i, 'chrom'], df.ix[i, 'start'], df.ix[i, 'end']]"},{'id': '168', 'type': 'subscript', 'children': ['169', '172', '173']},{'id': '169', 'type': 'attribute', 'children': ['170', '171']},{'id': '170', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'ix'},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '173', 'type': 'string', 'children': [], 'value': "'chrom'"},{'id': '174', 'type': 'subscript', 'children': ['175', '178', '179']},{'id': '175', 'type': 'attribute', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '177', 'type': 'identifier', 'children': [], 'value': 'ix'},{'id': '178', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '179', 'type': 'string', 'children': [], 'value': "'start'"},{'id': '180', 'type': 'subscript', 'children': ['181', '184', '185']},{'id': '181', 'type': 'attribute', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'df'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'ix'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '185', 'type': 'string', 'children': [], 'value': "'end'"},{'id': '186', 'type': 'expression_statement', 'children': ['187']},{'id': '187', 'type': 'call', 'children': ['188', '191']},{'id': '188', 'type': 'attribute', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '190', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '191', 'type': 'argument_list', 'children': ['192']},{'id': '192', 'type': 'call', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'get_region_nt_counts'},{'id': '194', 'type': 'argument_list', 'children': ['195', '196', '197']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'region'},{'id': '196', 'type': 'identifier', 'children': [], 'value': 'bam'},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'stranded'},{'id': '198', 'type': 'expression_statement', 'children': ['199']},{'id': '199', 'type': 'assignment', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '201', 'type': 'call', 'children': ['202', '205']},{'id': '202', 'type': 'attribute', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'pd'},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'concat'},{'id': '205', 'type': 'argument_list', 'children': ['206']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '207', 'type': 'return_statement', 'children': ['208']},{'id': '208', 'type': 'identifier', 'children': [], 'value': 'res'} | def nt_counts(bam, positions, stranded=False, vcf=False, bed=False):
if not bed and not vcf:
if type(positions) == pbt.bedtool.BedTool:
df = positions.to_dataframe()
elif positions[-4:] == '.bed':
bed = True
elif positions[-4:] == '.vcf':
vcf = True
else:
sys.stderr.write('Positions must be BedTool, bed file, or vcf '
'file.\n')
if bed:
df = pbt.BedTool(positions).to_dataframe()
elif vcf:
from variants import vcf_as_df
tdf = vcf_as_df(positions)
df = pd.DataFrame(index=tdf.index)
df['chrom'] = tdf.CHROM
df['start'] = tdf.POS - 1
df['end'] = tdf.POS
res = []
for i in df.index:
region = [df.ix[i, 'chrom'], df.ix[i, 'start'], df.ix[i, 'end']]
res.append(get_region_nt_counts(region, bam, stranded))
res = pd.concat(res)
return res |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'add_host'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'group_names'},{'id': '8', 'type': 'None', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'host_vars'},{'id': '11', 'type': 'None', 'children': []},{'id': '12', 'type': 'block', 'children': ['13', '20', '27', '33', '43', '53', '70', '80']},{'id': '13', 'type': 'expression_statement', 'children': ['14']},{'id': '14', 'type': 'assignment', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'gnames'},{'id': '16', 'type': 'conditional_expression', 'children': ['17', '18', '19'], 'value': 'if'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'group_names'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'group_names'},{'id': '19', 'type': 'list', 'children': [], 'value': '[]'},{'id': '20', 'type': 'expression_statement', 'children': ['21']},{'id': '21', 'type': 'assignment', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'hvars'},{'id': '23', 'type': 'conditional_expression', 'children': ['24', '25', '26'], 'value': 'if'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'host_vars'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'host_vars'},{'id': '26', 'type': 'dictionary', 'children': []},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'call', 'children': ['29', '32']},{'id': '29', 'type': 'attribute', 'children': ['30', '31']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'gnames'},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '32', 'type': 'argument_list', 'children': []},{'id': '33', 'type': 'expression_statement', 'children': ['34']},{'id': '34', 'type': 'assignment', 'children': ['35', '42']},{'id': '35', 'type': 'subscript', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'hvars'},{'id': '37', 'type': 'attribute', 'children': ['38', '41']},{'id': '38', 'type': 'attribute', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'server'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'GROUP_NAMES'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'gnames'},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '52']},{'id': '45', 'type': 'subscript', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'hvars'},{'id': '47', 'type': 'attribute', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'server'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'INV_NAME'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '62']},{'id': '55', 'type': 'subscript', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'hvars'},{'id': '57', 'type': 'attribute', 'children': ['58', '61']},{'id': '58', 'type': 'attribute', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'A'},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'server'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'INV_NAME_SHORT'},{'id': '62', 'type': 'subscript', 'children': ['63', '69']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '69', 'type': 'integer', 'children': [], 'value': '0'},{'id': '70', 'type': 'expression_statement', 'children': ['71']},{'id': '71', 'type': 'call', 'children': ['72', '77']},{'id': '72', 'type': 'attribute', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'groups_and_vars'},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'merge'},{'id': '77', 'type': 'argument_list', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'host'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'hvars'},{'id': '80', 'type': 'for_statement', 'children': ['81', '82', '83']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'gname'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'group_names'},{'id': '83', 'type': 'block', 'children': ['84']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '91']},{'id': '86', 'type': 'attribute', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'groups_and_vars'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '91', 'type': 'argument_list', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'gname'},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'host'} | def add_host(self, host, group_names=None, host_vars=None):
gnames = group_names if group_names else []
hvars = host_vars if host_vars else {}
gnames.sort()
hvars[A.server.GROUP_NAMES] = gnames
hvars[A.server.INV_NAME] = host
hvars[A.server.INV_NAME_SHORT] = host.split('.')[0]
self.groups_and_vars.merge(host, hvars)
for gname in group_names:
self.groups_and_vars.append(gname, host) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'beds_to_boolean'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'beds_sorted'},{'id': '10', 'type': 'False', 'children': []},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'ref_sorted'},{'id': '13', 'type': 'False', 'children': []},{'id': '14', 'type': 'dictionary_splat_pattern', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '16', 'type': 'block', 'children': ['17', '26', '30', '92', '100', '141', '145', '169', '184', '247']},{'id': '17', 'type': 'expression_statement', 'children': ['18']},{'id': '18', 'type': 'assignment', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '20', 'type': 'call', 'children': ['21', '24']},{'id': '21', 'type': 'attribute', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'deepcopy'},{'id': '24', 'type': 'argument_list', 'children': ['25']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'fns'},{'id': '29', 'type': 'list', 'children': [], 'value': '[]'},{'id': '30', 'type': 'for_statement', 'children': ['31', '34', '38']},{'id': '31', 'type': 'pattern_list', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '34', 'type': 'call', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '36', 'type': 'argument_list', 'children': ['37']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '38', 'type': 'block', 'children': ['39', '76']},{'id': '39', 'type': 'if_statement', 'children': ['40', '46', '65']},{'id': '40', 'type': 'comparison_operator', 'children': ['41', '45'], 'value': '=='},{'id': '41', 'type': 'call', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '43', 'type': 'argument_list', 'children': ['44']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '46', 'type': 'block', 'children': ['47', '54']},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'fns'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '52', 'type': 'argument_list', 'children': ['53']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '54', 'type': 'expression_statement', 'children': ['55']},{'id': '55', 'type': 'assignment', 'children': ['56', '59']},{'id': '56', 'type': 'subscript', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'pbt'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'BedTool'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '65', 'type': 'else_clause', 'children': ['66']},{'id': '66', 'type': 'block', 'children': ['67']},{'id': '67', 'type': 'expression_statement', 'children': ['68']},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'fns'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '76', 'type': 'if_statement', 'children': ['77', '79']},{'id': '77', 'type': 'not_operator', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'beds_sorted'},{'id': '79', 'type': 'block', 'children': ['80']},{'id': '80', 'type': 'expression_statement', 'children': ['81']},{'id': '81', 'type': 'assignment', 'children': ['82', '85']},{'id': '82', 'type': 'subscript', 'children': ['83', '84']},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '85', 'type': 'call', 'children': ['86', '91']},{'id': '86', 'type': 'attribute', 'children': ['87', '90']},{'id': '87', 'type': 'subscript', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '91', 'type': 'argument_list', 'children': []},{'id': '92', 'type': 'expression_statement', 'children': ['93']},{'id': '93', 'type': 'assignment', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '95', 'type': 'call', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': '_sample_names'},{'id': '97', 'type': 'argument_list', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'fns'},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '100', 'type': 'if_statement', 'children': ['101', '102', '132']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '102', 'type': 'block', 'children': ['103', '120']},{'id': '103', 'type': 'if_statement', 'children': ['104', '110']},{'id': '104', 'type': 'comparison_operator', 'children': ['105', '109'], 'value': '=='},{'id': '105', 'type': 'call', 'children': ['106', '107']},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '110', 'type': 'block', 'children': ['111']},{'id': '111', 'type': 'expression_statement', 'children': ['112']},{'id': '112', 'type': 'assignment', 'children': ['113', '114']},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '114', 'type': 'call', 'children': ['115', '118']},{'id': '115', 'type': 'attribute', 'children': ['116', '117']},{'id': '116', 'type': 'identifier', 'children': [], 'value': 'pbt'},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'BedTool'},{'id': '118', 'type': 'argument_list', 'children': ['119']},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '120', 'type': 'if_statement', 'children': ['121', '123']},{'id': '121', 'type': 'not_operator', 'children': ['122']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'ref_sorted'},{'id': '123', 'type': 'block', 'children': ['124']},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'assignment', 'children': ['126', '127']},{'id': '126', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '127', 'type': 'call', 'children': ['128', '131']},{'id': '128', 'type': 'attribute', 'children': ['129', '130']},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '131', 'type': 'argument_list', 'children': []},{'id': '132', 'type': 'else_clause', 'children': ['133']},{'id': '133', 'type': 'block', 'children': ['134']},{'id': '134', 'type': 'expression_statement', 'children': ['135']},{'id': '135', 'type': 'assignment', 'children': ['136', '137']},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '137', 'type': 'call', 'children': ['138', '139']},{'id': '138', 'type': 'identifier', 'children': [], 'value': 'combine'},{'id': '139', 'type': 'argument_list', 'children': ['140']},{'id': '140', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '141', 'type': 'expression_statement', 'children': ['142']},{'id': '142', 'type': 'assignment', 'children': ['143', '144']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '144', 'type': 'list', 'children': [], 'value': '[]'},{'id': '145', 'type': 'for_statement', 'children': ['146', '147', '148']},{'id': '146', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '148', 'type': 'block', 'children': ['149']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'call', 'children': ['156', '159']},{'id': '156', 'type': 'attribute', 'children': ['157', '158']},{'id': '157', 'type': 'string', 'children': [], 'value': "'{}:{}-{}'"},{'id': '158', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '159', 'type': 'argument_list', 'children': ['160', '163', '166']},{'id': '160', 'type': 'attribute', 'children': ['161', '162']},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '163', 'type': 'attribute', 'children': ['164', '165']},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '165', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '166', 'type': 'attribute', 'children': ['167', '168']},{'id': '167', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '169', 'type': 'expression_statement', 'children': ['170']},{'id': '170', 'type': 'assignment', 'children': ['171', '172']},{'id': '171', 'type': 'identifier', 'children': [], 'value': 'bdf'},{'id': '172', 'type': 'call', 'children': ['173', '176']},{'id': '173', 'type': 'attribute', 'children': ['174', '175']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'pd'},{'id': '175', 'type': 'identifier', 'children': [], 'value': 'DataFrame'},{'id': '176', 'type': 'argument_list', 'children': ['177', '178', '181']},{'id': '177', 'type': 'integer', 'children': [], 'value': '0'},{'id': '178', 'type': 'keyword_argument', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'index'},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '181', 'type': 'keyword_argument', 'children': ['182', '183']},{'id': '182', 'type': 'identifier', 'children': [], 'value': 'columns'},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '184', 'type': 'for_statement', 'children': ['185', '188', '192']},{'id': '185', 'type': 'pattern_list', 'children': ['186', '187']},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '187', 'type': 'identifier', 'children': [], 'value': 'bed'},{'id': '188', 'type': 'call', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '190', 'type': 'argument_list', 'children': ['191']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '192', 'type': 'block', 'children': ['193', '208', '212', '236']},{'id': '193', 'type': 'expression_statement', 'children': ['194']},{'id': '194', 'type': 'assignment', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '196', 'type': 'call', 'children': ['197', '200']},{'id': '197', 'type': 'attribute', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'ref'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'intersect'},{'id': '200', 'type': 'argument_list', 'children': ['201', '202', '205']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'bed'},{'id': '202', 'type': 'keyword_argument', 'children': ['203', '204']},{'id': '203', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '204', 'type': 'True', 'children': []},{'id': '205', 'type': 'keyword_argument', 'children': ['206', '207']},{'id': '206', 'type': 'identifier', 'children': [], 'value': 'wa'},{'id': '207', 'type': 'True', 'children': []},{'id': '208', 'type': 'expression_statement', 'children': ['209']},{'id': '209', 'type': 'assignment', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '211', 'type': 'list', 'children': [], 'value': '[]'},{'id': '212', 'type': 'for_statement', 'children': ['213', '214', '215']},{'id': '213', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'res'},{'id': '215', 'type': 'block', 'children': ['216']},{'id': '216', 'type': 'expression_statement', 'children': ['217']},{'id': '217', 'type': 'call', 'children': ['218', '221']},{'id': '218', 'type': 'attribute', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '220', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '221', 'type': 'argument_list', 'children': ['222']},{'id': '222', 'type': 'call', 'children': ['223', '226']},{'id': '223', 'type': 'attribute', 'children': ['224', '225']},{'id': '224', 'type': 'string', 'children': [], 'value': "'{}:{}-{}'"},{'id': '225', 'type': 'identifier', 'children': [], 'value': 'format'},{'id': '226', 'type': 'argument_list', 'children': ['227', '230', '233']},{'id': '227', 'type': 'attribute', 'children': ['228', '229']},{'id': '228', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '230', 'type': 'attribute', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '232', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '233', 'type': 'attribute', 'children': ['234', '235']},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '235', 'type': 'identifier', 'children': [], 'value': 'stop'},{'id': '236', 'type': 'expression_statement', 'children': ['237']},{'id': '237', 'type': 'assignment', 'children': ['238', '246']},{'id': '238', 'type': 'subscript', 'children': ['239', '242', '243']},{'id': '239', 'type': 'attribute', 'children': ['240', '241']},{'id': '240', 'type': 'identifier', 'children': [], 'value': 'bdf'},{'id': '241', 'type': 'identifier', 'children': [], 'value': 'ix'},{'id': '242', 'type': 'identifier', 'children': [], 'value': 'ind'},{'id': '243', 'type': 'subscript', 'children': ['244', '245']},{'id': '244', 'type': 'identifier', 'children': [], 'value': 'names'},{'id': '245', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '246', 'type': 'integer', 'children': [], 'value': '1'},{'id': '247', 'type': 'return_statement', 'children': ['248']},{'id': '248', 'type': 'identifier', 'children': [], 'value': 'bdf'} | def beds_to_boolean(beds, ref=None, beds_sorted=False, ref_sorted=False,
**kwargs):
beds = copy.deepcopy(beds)
fns = []
for i,v in enumerate(beds):
if type(v) == str:
fns.append(v)
beds[i] = pbt.BedTool(v)
else:
fns.append(v.fn)
if not beds_sorted:
beds[i] = beds[i].sort()
names = _sample_names(fns, kwargs)
if ref:
if type(ref) == str:
ref = pbt.BedTool(ref)
if not ref_sorted:
ref = ref.sort()
else:
ref = combine(beds)
ind = []
for r in ref:
ind.append('{}:{}-{}'.format(r.chrom, r.start, r.stop))
bdf = pd.DataFrame(0, index=ind, columns=names)
for i,bed in enumerate(beds):
res = ref.intersect(bed, sorted=True, wa=True)
ind = []
for r in res:
ind.append('{}:{}-{}'.format(r.chrom,
r.start,
r.stop))
bdf.ix[ind, names[i]] = 1
return bdf |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'combine'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'beds_sorted'},{'id': '7', 'type': 'False', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'postmerge'},{'id': '10', 'type': 'True', 'children': []},{'id': '11', 'type': 'block', 'children': ['12', '21', '65', '85', '93', '104']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'assignment', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '15', 'type': 'call', 'children': ['16', '19']},{'id': '16', 'type': 'attribute', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'copy'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'deepcopy'},{'id': '19', 'type': 'argument_list', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '21', 'type': 'for_statement', 'children': ['22', '25', '29']},{'id': '22', 'type': 'pattern_list', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'enumerate'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '29', 'type': 'block', 'children': ['30', '49']},{'id': '30', 'type': 'if_statement', 'children': ['31', '37']},{'id': '31', 'type': 'comparison_operator', 'children': ['32', '36'], 'value': '=='},{'id': '32', 'type': 'call', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '34', 'type': 'argument_list', 'children': ['35']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '37', 'type': 'block', 'children': ['38']},{'id': '38', 'type': 'expression_statement', 'children': ['39']},{'id': '39', 'type': 'assignment', 'children': ['40', '43']},{'id': '40', 'type': 'subscript', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '43', 'type': 'call', 'children': ['44', '47']},{'id': '44', 'type': 'attribute', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'pbt'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'BedTool'},{'id': '47', 'type': 'argument_list', 'children': ['48']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'v'},{'id': '49', 'type': 'if_statement', 'children': ['50', '52']},{'id': '50', 'type': 'not_operator', 'children': ['51']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'beds_sorted'},{'id': '52', 'type': 'block', 'children': ['53']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '58']},{'id': '55', 'type': 'subscript', 'children': ['56', '57']},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '58', 'type': 'call', 'children': ['59', '64']},{'id': '59', 'type': 'attribute', 'children': ['60', '63']},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '64', 'type': 'argument_list', 'children': []},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'reduce'},{'id': '70', 'type': 'argument_list', 'children': ['71', '84']},{'id': '71', 'type': 'lambda', 'children': ['72', '75']},{'id': '72', 'type': 'lambda_parameters', 'children': ['73', '74']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '75', 'type': 'call', 'children': ['76', '79']},{'id': '76', 'type': 'attribute', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'cat'},{'id': '79', 'type': 'argument_list', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'postmerge'},{'id': '83', 'type': 'False', 'children': []},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'beds'},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'assignment', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '88', 'type': 'call', 'children': ['89', '92']},{'id': '89', 'type': 'attribute', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '92', 'type': 'argument_list', 'children': []},{'id': '93', 'type': 'if_statement', 'children': ['94', '95']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'postmerge'},{'id': '95', 'type': 'block', 'children': ['96']},{'id': '96', 'type': 'expression_statement', 'children': ['97']},{'id': '97', 'type': 'assignment', 'children': ['98', '99']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '99', 'type': 'call', 'children': ['100', '103']},{'id': '100', 'type': 'attribute', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'merge'},{'id': '103', 'type': 'argument_list', 'children': []},{'id': '104', 'type': 'return_statement', 'children': ['105']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'out'} | def combine(beds, beds_sorted=False, postmerge=True):
beds = copy.deepcopy(beds)
for i,v in enumerate(beds):
if type(v) == str:
beds[i] = pbt.BedTool(v)
if not beds_sorted:
beds[i] = beds[i].sort()
out = reduce(lambda x,y : x.cat(y, postmerge=False), beds)
out = out.sort()
if postmerge:
out = out.merge()
return out |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'sanitize_config_loglevel'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '5', 'type': 'block', 'children': ['6', '8', '31', '35', '53', '64']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "'''\n Kinda sorta backport of loglevel sanitization for Python 2.6.\n '''"},{'id': '8', 'type': 'if_statement', 'children': ['9', '28']},{'id': '9', 'type': 'boolean_operator', 'children': ['10', '21'], 'value': 'or'},{'id': '10', 'type': 'comparison_operator', 'children': ['11', '18'], 'value': '!='},{'id': '11', 'type': 'subscript', 'children': ['12', '15']},{'id': '12', 'type': 'attribute', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'version_info'},{'id': '15', 'type': 'slice', 'children': ['16', '17']},{'id': '16', 'type': 'colon', 'children': []},{'id': '17', 'type': 'integer', 'children': [], 'value': '2'},{'id': '18', 'type': 'tuple', 'children': ['19', '20']},{'id': '19', 'type': 'integer', 'children': [], 'value': '2'},{'id': '20', 'type': 'integer', 'children': [], 'value': '6'},{'id': '21', 'type': 'call', 'children': ['22', '23']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '23', 'type': 'argument_list', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '25', 'type': 'tuple', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'long'},{'id': '28', 'type': 'block', 'children': ['29']},{'id': '29', 'type': 'return_statement', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '31', 'type': 'expression_statement', 'children': ['32']},{'id': '32', 'type': 'assignment', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '34', 'type': 'None', 'children': []},{'id': '35', 'type': 'if_statement', 'children': ['36', '41']},{'id': '36', 'type': 'call', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '38', 'type': 'argument_list', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '41', 'type': 'block', 'children': ['42']},{'id': '42', 'type': 'expression_statement', 'children': ['43']},{'id': '43', 'type': 'assignment', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '45', 'type': 'call', 'children': ['46', '51']},{'id': '46', 'type': 'attribute', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '49', 'type': 'identifier', 'children': [], 'value': '_levelNames'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'get'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '53', 'type': 'if_statement', 'children': ['54', '56']},{'id': '54', 'type': 'not_operator', 'children': ['55']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'lvl'},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'raise_statement', 'children': ['58']},{'id': '58', 'type': 'call', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '60', 'type': 'argument_list', 'children': ['61']},{'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '%'},{'id': '62', 'type': 'string', 'children': [], 'value': "'Invalid log level, %s'"},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '64', 'type': 'return_statement', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'lvl'} | def sanitize_config_loglevel(level):
'''
Kinda sorta backport of loglevel sanitization for Python 2.6.
'''
if sys.version_info[:2] != (2, 6) or isinstance(level, (int, long)):
return level
lvl = None
if isinstance(level, basestring):
lvl = logging._levelNames.get(level)
if not lvl:
raise ValueError('Invalid log level, %s' % level)
return lvl |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'prt_js'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'js'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '7', 'type': 'True', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'indent'},{'id': '10', 'type': 'integer', 'children': [], 'value': '4'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'expression_statement', 'children': ['13']},{'id': '13', 'type': 'call', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'print'},{'id': '15', 'type': 'argument_list', 'children': ['16']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'js2str'},{'id': '18', 'type': 'argument_list', 'children': ['19', '20', '21']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'js'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'sort_keys'},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'indent'} | def prt_js(js, sort_keys=True, indent=4):
print(js2str(js, sort_keys, indent)) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_field_names'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_MODEL'},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_APP'},{'id': '11', 'type': 'default_parameter', 'children': ['12', '13']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'score_cutoff'},{'id': '13', 'type': 'integer', 'children': [], 'value': '50'},{'id': '14', 'type': 'default_parameter', 'children': ['15', '16']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'pad_with_none'},{'id': '16', 'type': 'False', 'children': []},{'id': '17', 'type': 'block', 'children': ['18', '27', '35', '45', '49', '96']},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '21', 'type': 'call', 'children': ['22', '25']},{'id': '22', 'type': 'attribute', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'util'},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'listify'},{'id': '25', 'type': 'argument_list', 'children': ['26']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '27', 'type': 'expression_statement', 'children': ['28']},{'id': '28', 'type': 'assignment', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'get_model'},{'id': '32', 'type': 'argument_list', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'available_field_names'},{'id': '38', 'type': 'call', 'children': ['39', '44']},{'id': '39', 'type': 'attribute', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '42', 'type': 'identifier', 'children': [], 'value': '_meta'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'get_all_field_names'},{'id': '44', 'type': 'argument_list', 'children': []},{'id': '45', 'type': 'expression_statement', 'children': ['46']},{'id': '46', 'type': 'assignment', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'matched_fields'},{'id': '48', 'type': 'list', 'children': [], 'value': '[]'},{'id': '49', 'type': 'for_statement', 'children': ['50', '51', '52']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'fields'},{'id': '52', 'type': 'block', 'children': ['53', '66']},{'id': '53', 'type': 'expression_statement', 'children': ['54']},{'id': '54', 'type': 'assignment', 'children': ['55', '56']},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '56', 'type': 'call', 'children': ['57', '60']},{'id': '57', 'type': 'attribute', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'fuzzy'},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'extractOne'},{'id': '60', 'type': 'argument_list', 'children': ['61', '65']},{'id': '61', 'type': 'call', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'identifier', 'children': [], 'value': 'field_name'},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'available_field_names'},{'id': '66', 'type': 'if_statement', 'children': ['67', '80', '88']},{'id': '67', 'type': 'boolean_operator', 'children': ['68', '75'], 'value': 'and'},{'id': '68', 'type': 'boolean_operator', 'children': ['69', '70'], 'value': 'and'},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '70', 'type': 'comparison_operator', 'children': ['71', '74'], 'value': 'is'},{'id': '71', 'type': 'subscript', 'children': ['72', '73']},{'id': '72', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '73', 'type': 'integer', 'children': [], 'value': '1'},{'id': '74', 'type': 'None', 'children': []},{'id': '75', 'type': 'comparison_operator', 'children': ['76', '79'], 'value': '>='},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '78', 'type': 'integer', 'children': [], 'value': '1'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'score_cutoff'},{'id': '80', 'type': 'block', 'children': ['81']},{'id': '81', 'type': 'expression_statement', 'children': ['82']},{'id': '82', 'type': 'augmented_assignment', 'children': ['83', '84'], 'value': '+='},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'matched_fields'},{'id': '84', 'type': 'list', 'children': ['85'], 'value': '[match[0]]'},{'id': '85', 'type': 'subscript', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'match'},{'id': '87', 'type': 'integer', 'children': [], 'value': '0'},{'id': '88', 'type': 'elif_clause', 'children': ['89', '90']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'pad_with_none'},{'id': '90', 'type': 'block', 'children': ['91']},{'id': '91', 'type': 'expression_statement', 'children': ['92']},{'id': '92', 'type': 'augmented_assignment', 'children': ['93', '94'], 'value': '+='},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'matched_fields'},{'id': '94', 'type': 'list', 'children': ['95'], 'value': '[None]'},{'id': '95', 'type': 'None', 'children': []},{'id': '96', 'type': 'return_statement', 'children': ['97']},{'id': '97', 'type': 'identifier', 'children': [], 'value': 'matched_fields'} | def find_field_names(fields, model=DEFAULT_MODEL, app=DEFAULT_APP, score_cutoff=50, pad_with_none=False):
fields = util.listify(fields)
model = get_model(model, app)
available_field_names = model._meta.get_all_field_names()
matched_fields = []
for field_name in fields:
match = fuzzy.extractOne(str(field_name), available_field_names)
if match and match[1] is not None and match[1] >= score_cutoff:
matched_fields += [match[0]]
elif pad_with_none:
matched_fields += [None]
return matched_fields |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '34']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'lagged_in_date'},{'id': '3', 'type': 'parameters', 'children': ['4', '7', '10', '13', '16', '19', '22', '25', '28', '31']},{'id': '4', 'type': 'default_parameter', 'children': ['5', '6']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '6', 'type': 'None', 'children': []},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'default_parameter', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'filter_dict'},{'id': '12', 'type': 'None', 'children': []},{'id': '13', 'type': 'default_parameter', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '15', 'type': 'string', 'children': [], 'value': "'WikiItem'"},{'id': '16', 'type': 'default_parameter', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'DEFAULT_APP'},{'id': '19', 'type': 'default_parameter', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '21', 'type': 'True', 'children': []},{'id': '22', 'type': 'default_parameter', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '24', 'type': 'integer', 'children': [], 'value': '30000'},{'id': '25', 'type': 'default_parameter', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '27', 'type': 'integer', 'children': [], 'value': '1'},{'id': '28', 'type': 'default_parameter', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'pad'},{'id': '30', 'type': 'integer', 'children': [], 'value': '0'},{'id': '31', 'type': 'default_parameter', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '33', 'type': 'True', 'children': []},{'id': '34', 'type': 'block', 'children': ['35', '44', '87', '161', '235']},{'id': '35', 'type': 'expression_statement', 'children': ['36']},{'id': '36', 'type': 'assignment', 'children': ['37', '38']},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'boolean_operator', 'children': ['42', '43'], 'value': 'or'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '43', 'type': 'integer', 'children': [], 'value': '0'},{'id': '44', 'type': 'if_statement', 'children': ['45', '56']},{'id': '45', 'type': 'boolean_operator', 'children': ['46', '51'], 'value': 'and'},{'id': '46', 'type': 'call', 'children': ['47', '48']},{'id': '47', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '48', 'type': 'argument_list', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '51', 'type': 'call', 'children': ['52', '53']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'isinstance'},{'id': '53', 'type': 'argument_list', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'basestring'},{'id': '56', 'type': 'block', 'children': ['57']},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '62']},{'id': '59', 'type': 'pattern_list', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '62', 'type': 'call', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'sequence_from_filter_spec'},{'id': '64', 'type': 'argument_list', 'children': ['65', '74', '75', '78', '81', '84']},{'id': '65', 'type': 'list', 'children': ['66', '70'], 'value': '[find_synonymous_field(x), find_synonymous_field(y)]'},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'find_synonymous_field'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'find_synonymous_field'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'filter_dict'},{'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'model'},{'id': '78', 'type': 'keyword_argument', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'app'},{'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '87', 'type': 'if_statement', 'children': ['88', '99']},{'id': '88', 'type': 'boolean_operator', 'children': ['89', '90'], 'value': 'and'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '90', 'type': 'comparison_operator', 'children': ['91', '95'], 'value': '=='},{'id': '91', 'type': 'call', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '93', 'type': 'argument_list', 'children': ['94']},{'id': '94', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '95', 'type': 'call', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '99', 'type': 'block', 'children': ['100', '145']},{'id': '100', 'type': 'if_statement', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '102', 'type': 'block', 'children': ['103', '125']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'xy'},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '108', 'type': 'argument_list', 'children': ['109', '114']},{'id': '109', 'type': 'call', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'zip'},{'id': '111', 'type': 'argument_list', 'children': ['112', '113']},{'id': '112', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '113', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '114', 'type': 'keyword_argument', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'reverse'},{'id': '116', 'type': 'call', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'bool'},{'id': '118', 'type': 'argument_list', 'children': ['119']},{'id': '119', 'type': 'comparison_operator', 'children': ['120', '124'], 'value': '<'},{'id': '120', 'type': 'call', 'children': ['121', '122']},{'id': '121', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '122', 'type': 'argument_list', 'children': ['123']},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '124', 'type': 'integer', 'children': [], 'value': '0'},{'id': '125', 'type': 'expression_statement', 'children': ['126']},{'id': '126', 'type': 'assignment', 'children': ['127', '130']},{'id': '127', 'type': 'pattern_list', 'children': ['128', '129']},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '130', 'type': 'expression_list', 'children': ['131', '138']},{'id': '131', 'type': 'list_comprehension', 'children': ['132', '133']},{'id': '132', 'type': 'identifier', 'children': [], 'value': 'col1'},{'id': '133', 'type': 'for_in_clause', 'children': ['134', '137']},{'id': '134', 'type': 'pattern_list', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'col1'},{'id': '136', 'type': 'identifier', 'children': [], 'value': 'col2'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'xy'},{'id': '138', 'type': 'list_comprehension', 'children': ['139', '140']},{'id': '139', 'type': 'identifier', 'children': [], 'value': 'col2'},{'id': '140', 'type': 'for_in_clause', 'children': ['141', '144']},{'id': '141', 'type': 'pattern_list', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'col1'},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'col2'},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'xy'},{'id': '145', 'type': 'return_statement', 'children': ['146']},{'id': '146', 'type': 'expression_list', 'children': ['147', '148']},{'id': '147', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '148', 'type': 'call', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'lagged_seq'},{'id': '150', 'type': 'argument_list', 'children': ['151', '152', '155', '158']},{'id': '151', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '152', 'type': 'keyword_argument', 'children': ['153', '154']},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '154', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '155', 'type': 'keyword_argument', 'children': ['156', '157']},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'pad'},{'id': '157', 'type': 'identifier', 'children': [], 'value': 'pad'},{'id': '158', 'type': 'keyword_argument', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '161', 'type': 'if_statement', 'children': ['162', '181']},{'id': '162', 'type': 'boolean_operator', 'children': ['163', '169'], 'value': 'and'},{'id': '163', 'type': 'boolean_operator', 'children': ['164', '165'], 'value': 'and'},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '165', 'type': 'call', 'children': ['166', '167']},{'id': '166', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '167', 'type': 'argument_list', 'children': ['168']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '169', 'type': 'comparison_operator', 'children': ['170', '171', '175'], 'value': '=='},{'id': '170', 'type': 'integer', 'children': [], 'value': '2'},{'id': '171', 'type': 'call', 'children': ['172', '173']},{'id': '172', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '173', 'type': 'argument_list', 'children': ['174']},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '175', 'type': 'call', 'children': ['176', '177']},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '177', 'type': 'argument_list', 'children': ['178']},{'id': '178', 'type': 'subscript', 'children': ['179', '180']},{'id': '179', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '180', 'type': 'integer', 'children': [], 'value': '0'},{'id': '181', 'type': 'block', 'children': ['182', '206']},{'id': '182', 'type': 'expression_statement', 'children': ['183']},{'id': '183', 'type': 'assignment', 'children': ['184', '187']},{'id': '184', 'type': 'pattern_list', 'children': ['185', '186']},{'id': '185', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '186', 'type': 'identifier', 'children': [], 'value': 'y'},{'id': '187', 'type': 'expression_list', 'children': ['188', '191']},{'id': '188', 'type': 'subscript', 'children': ['189', '190']},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '190', 'type': 'integer', 'children': [], 'value': '0'},{'id': '191', 'type': 'call', 'children': ['192', '193']},{'id': '192', 'type': 'identifier', 'children': [], 'value': 'lagged_seq'},{'id': '193', 'type': 'argument_list', 'children': ['194', '197', '200', '203']},{'id': '194', 'type': 'subscript', 'children': ['195', '196']},{'id': '195', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '196', 'type': 'integer', 'children': [], 'value': '1'},{'id': '197', 'type': 'keyword_argument', 'children': ['198', '199']},{'id': '198', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '199', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '200', 'type': 'keyword_argument', 'children': ['201', '202']},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'pad'},{'id': '202', 'type': 'identifier', 'children': [], 'value': 'pad'},{'id': '203', 'type': 'keyword_argument', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '205', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '206', 'type': 'if_statement', 'children': ['207', '208']},{'id': '207', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '208', 'type': 'block', 'children': ['209', '212']},{'id': '209', 'type': 'print_statement', 'children': ['210', '211']},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'truncate'},{'id': '211', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '212', 'type': 'if_statement', 'children': ['213', '216', '225']},{'id': '213', 'type': 'comparison_operator', 'children': ['214', '215'], 'value': '>='},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '215', 'type': 'integer', 'children': [], 'value': '0'},{'id': '216', 'type': 'block', 'children': ['217']},{'id': '217', 'type': 'expression_statement', 'children': ['218']},{'id': '218', 'type': 'assignment', 'children': ['219', '220']},{'id': '219', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '220', 'type': 'subscript', 'children': ['221', '222']},{'id': '221', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '222', 'type': 'slice', 'children': ['223', '224']},{'id': '223', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '224', 'type': 'colon', 'children': []},{'id': '225', 'type': 'else_clause', 'children': ['226']},{'id': '226', 'type': 'block', 'children': ['227']},{'id': '227', 'type': 'expression_statement', 'children': ['228']},{'id': '228', 'type': 'assignment', 'children': ['229', '230']},{'id': '229', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '230', 'type': 'subscript', 'children': ['231', '232']},{'id': '231', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '232', 'type': 'slice', 'children': ['233', '234']},{'id': '233', 'type': 'colon', 'children': []},{'id': '234', 'type': 'identifier', 'children': [], 'value': 'lag'},{'id': '235', 'type': 'return_statement', 'children': ['236']},{'id': '236', 'type': 'expression_list', 'children': ['237', '238']},{'id': '237', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '238', 'type': 'identifier', 'children': [], 'value': 'y'} | def lagged_in_date(x=None, y=None, filter_dict=None, model='WikiItem', app=DEFAULT_APP, sort=True, limit=30000, lag=1, pad=0, truncate=True):
lag = int(lag or 0)
if isinstance(x, basestring) and isinstance(y, basestring):
x, y = sequence_from_filter_spec([find_synonymous_field(x), find_synonymous_field(y)], filter_dict, model=model,
app=app, sort=sort, limit=limit)
if y and len(y) == len(x):
if sort:
xy = sorted(zip(x,y), reverse=bool(int(sort) < 0))
x, y = [col1 for col1, col2 in xy], [col2 for col1, col2 in xy]
return x, lagged_seq(y, lag=lag, pad=pad, truncate=truncate)
if x and len(x) and 2 == len(x) <= len(x[0]):
x, y = x[0], lagged_seq(x[1], lag=lag, pad=pad, truncate=truncate)
if truncate:
print truncate, lag
if lag >= 0:
x = x[lag:]
else:
x = x[:lag]
return x, y |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'percentile'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'key'},{'id': '8', 'type': 'lambda', 'children': ['9', '11']},{'id': '9', 'type': 'lambda_parameters', 'children': ['10']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'x'},{'id': '12', 'type': 'block', 'children': ['13', '19', '32', '44', '51', '57', '85']},{'id': '13', 'type': 'if_statement', 'children': ['14', '16']},{'id': '14', 'type': 'not_operator', 'children': ['15']},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '16', 'type': 'block', 'children': ['17']},{'id': '17', 'type': 'return_statement', 'children': ['18']},{'id': '18', 'type': 'None', 'children': []},{'id': '19', 'type': 'if_statement', 'children': ['20', '23']},{'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': '=='},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '22', 'type': 'integer', 'children': [], 'value': '1'},{'id': '23', 'type': 'block', 'children': ['24']},{'id': '24', 'type': 'return_statement', 'children': ['25']},{'id': '25', 'type': 'call', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '27', 'type': 'argument_list', 'children': ['28']},{'id': '28', 'type': 'subscript', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '30', 'type': 'unary_operator', 'children': ['31'], 'value': '-'},{'id': '31', 'type': 'integer', 'children': [], 'value': '1'},{'id': '32', 'type': 'if_statement', 'children': ['33', '36']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': '=='},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '35', 'type': 'integer', 'children': [], 'value': '0'},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'return_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '40', 'type': 'argument_list', 'children': ['41']},{'id': '41', 'type': 'subscript', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '43', 'type': 'integer', 'children': [], 'value': '0'},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '47', 'type': 'call', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '49', 'type': 'argument_list', 'children': ['50']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '51', 'type': 'expression_statement', 'children': ['52']},{'id': '52', 'type': 'assignment', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '54', 'type': 'binary_operator', 'children': ['55', '56'], 'value': '*'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'percent'},{'id': '56', 'type': 'identifier', 'children': [], 'value': 'n'},{'id': '57', 'type': 'if_statement', 'children': ['58', '64']},{'id': '58', 'type': 'comparison_operator', 'children': ['59', '63'], 'value': '=='},{'id': '59', 'type': 'call', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'ceil'},{'id': '61', 'type': 'argument_list', 'children': ['62']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '64', 'type': 'block', 'children': ['65', '72']},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '68', 'type': 'call', 'children': ['69', '70']},{'id': '69', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '70', 'type': 'argument_list', 'children': ['71']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '72', 'type': 'return_statement', 'children': ['73']},{'id': '73', 'type': 'binary_operator', 'children': ['74', '84'], 'value': '/'},{'id': '74', 'type': '()', 'children': ['75']},{'id': '75', 'type': 'binary_operator', 'children': ['76', '81'], 'value': '+'},{'id': '76', 'type': 'subscript', 'children': ['77', '78']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '78', 'type': 'binary_operator', 'children': ['79', '80'], 'value': '-'},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '80', 'type': 'integer', 'children': [], 'value': '1'},{'id': '81', 'type': 'subscript', 'children': ['82', '83']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '83', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '84', 'type': 'integer', 'children': [], 'value': '2'},{'id': '85', 'type': 'return_statement', 'children': ['86']},{'id': '86', 'type': 'call', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'float'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'subscript', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'sorted_list'},{'id': '91', 'type': 'binary_operator', 'children': ['92', '96'], 'value': '-'},{'id': '92', 'type': 'call', 'children': ['93', '94']},{'id': '93', 'type': 'identifier', 'children': [], 'value': 'ceil'},{'id': '94', 'type': 'argument_list', 'children': ['95']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'i'},{'id': '96', 'type': 'integer', 'children': [], 'value': '1'} | def percentile(sorted_list, percent, key=lambda x: x):
if not sorted_list:
return None
if percent == 1:
return float(sorted_list[-1])
if percent == 0:
return float(sorted_list[0])
n = len(sorted_list)
i = percent * n
if ceil(i) == i:
i = int(i)
return (sorted_list[i-1] + sorted_list[i]) / 2
return float(sorted_list[ceil(i)-1]) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'tags'},{'id': '3', 'type': 'parameters', 'children': ['4']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'block', 'children': ['6', '8', '21', '30', '43', '56', '64']},{'id': '6', 'type': 'expression_statement', 'children': ['7']},{'id': '7', 'type': 'string', 'children': [], 'value': "'''Return a list of all tags that have this semantic tag, sorted by name.\n\t\t:rtype: list of ckan.model.tag.Tag objects\n\t\t'''"},{'id': '8', 'type': 'expression_statement', 'children': ['9']},{'id': '9', 'type': 'assignment', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '11', 'type': 'call', 'children': ['12', '17']},{'id': '12', 'type': 'attribute', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'meta'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'Session'},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '17', 'type': 'argument_list', 'children': ['18']},{'id': '18', 'type': 'attribute', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': '_tag'},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'Tag'},{'id': '21', 'type': 'expression_statement', 'children': ['22']},{'id': '22', 'type': 'assignment', 'children': ['23', '24']},{'id': '23', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '24', 'type': 'call', 'children': ['25', '28']},{'id': '25', 'type': 'attribute', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'TagSemanticTag'},{'id': '30', 'type': 'expression_statement', 'children': ['31']},{'id': '31', 'type': 'assignment', 'children': ['32', '33']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '33', 'type': 'call', 'children': ['34', '37']},{'id': '34', 'type': 'attribute', 'children': ['35', '36']},{'id': '35', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'filter_by'},{'id': '37', 'type': 'argument_list', 'children': ['38']},{'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'tag_id'},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'id'},{'id': '43', 'type': 'expression_statement', 'children': ['44']},{'id': '44', 'type': 'assignment', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '46', 'type': 'call', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '50', 'type': 'argument_list', 'children': ['51']},{'id': '51', 'type': 'attribute', 'children': ['52', '55']},{'id': '52', 'type': 'attribute', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': '_tag'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'Tag'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'tags'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'q'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'all'},{'id': '63', 'type': 'argument_list', 'children': []},{'id': '64', 'type': 'return_statement', 'children': ['65']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'tags'} | def tags(self):
'''Return a list of all tags that have this semantic tag, sorted by name.
:rtype: list of ckan.model.tag.Tag objects
'''
q = meta.Session.query(_tag.Tag)
q = q.join(TagSemanticTag)
q = q.filter_by(tag_id=self.id)
q = q.order_by(_tag.Tag.name)
tags = q.all()
return tags |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'ERROR', 'children': ['2', '178', '195', '203', '213']},{'id': '2', 'type': 'function_definition', 'children': ['3', '4', '10']},{'id': '3', 'type': 'function_name', 'children': [], 'value': 'make_feature_bed'},{'id': '4', 'type': 'parameters', 'children': ['5', '6', '7']},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'gtf'},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '7', 'type': 'default_parameter', 'children': ['8', '9']},{'id': '8', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '9', 'type': 'None', 'children': []},{'id': '10', 'type': 'block', 'children': ['11', '15']},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'bed_lines'},{'id': '14', 'type': 'list', 'children': [], 'value': '[]'},{'id': '15', 'type': 'with_statement', 'children': ['16', '25']},{'id': '16', 'type': 'with_clause', 'children': ['17']},{'id': '17', 'type': 'with_item', 'children': ['18']},{'id': '18', 'type': 'as_pattern', 'children': ['19', '23']},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'gtf'},{'id': '23', 'type': 'as_pattern_target', 'children': ['24']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '25', 'type': 'block', 'children': ['26', '38', '166']},{'id': '26', 'type': 'expression_statement', 'children': ['27']},{'id': '27', 'type': 'assignment', 'children': ['28', '29']},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '29', 'type': 'call', 'children': ['30', '37']},{'id': '30', 'type': 'attribute', 'children': ['31', '36']},{'id': '31', 'type': 'call', 'children': ['32', '35']},{'id': '32', 'type': 'attribute', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'readline'},{'id': '35', 'type': 'argument_list', 'children': []},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '37', 'type': 'argument_list', 'children': []},{'id': '38', 'type': 'while_statement', 'children': ['39', '42', '49']},{'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': '!='},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '41', 'type': 'string', 'children': [], 'value': "''"},{'id': '42', 'type': 'ERROR', 'children': ['43', '46', '47']},{'id': '43', 'type': 'subscript', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '45', 'type': 'integer', 'children': [], 'value': '0'},{'id': '46', 'type': 'string', 'children': [], 'value': "'\n line = line.split('"},{'id': '47', 'type': 'ERROR', 'children': ['48']},{'id': '48', 'type': 'escape_sequence', 'children': [], 'value': '\\t'},{'id': '49', 'type': 'block', 'children': ['50']},{'id': '50', 'type': 'if_statement', 'children': ['51', '56']},{'id': '51', 'type': 'comparison_operator', 'children': ['52', '55'], 'value': '=='},{'id': '52', 'type': 'subscript', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '54', 'type': 'integer', 'children': [], 'value': '2'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '56', 'type': 'block', 'children': ['57', '63', '77', '83', '140', '146']},{'id': '57', 'type': 'expression_statement', 'children': ['58']},{'id': '58', 'type': 'assignment', 'children': ['59', '60']},{'id': '59', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '60', 'type': 'subscript', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '62', 'type': 'integer', 'children': [], 'value': '0'},{'id': '63', 'type': 'expression_statement', 'children': ['64']},{'id': '64', 'type': 'assignment', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '66', 'type': 'call', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '68', 'type': 'argument_list', 'children': ['69']},{'id': '69', 'type': 'binary_operator', 'children': ['70', '76'], 'value': '-'},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'int'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'subscript', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '75', 'type': 'integer', 'children': [], 'value': '3'},{'id': '76', 'type': 'integer', 'children': [], 'value': '1'},{'id': '77', 'type': 'expression_statement', 'children': ['78']},{'id': '78', 'type': 'assignment', 'children': ['79', '80']},{'id': '79', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '80', 'type': 'subscript', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '82', 'type': 'integer', 'children': [], 'value': '4'},{'id': '83', 'type': 'if_statement', 'children': ['84', '87', '113']},{'id': '84', 'type': 'comparison_operator', 'children': ['85', '86'], 'value': '=='},{'id': '85', 'type': 'identifier', 'children': [], 'value': 'feature'},{'id': '86', 'type': 'string', 'children': [], 'value': "'gene'"},{'id': '87', 'type': 'block', 'children': ['88']},{'id': '88', 'type': 'expression_statement', 'children': ['89']},{'id': '89', 'type': 'assignment', 'children': ['90', '91']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '91', 'type': 'call', 'children': ['92', '111']},{'id': '92', 'type': 'attribute', 'children': ['93', '110']},{'id': '93', 'type': 'subscript', 'children': ['94', '109']},{'id': '94', 'type': 'call', 'children': ['95', '107']},{'id': '95', 'type': 'attribute', 'children': ['96', '106']},{'id': '96', 'type': 'subscript', 'children': ['97', '105']},{'id': '97', 'type': 'call', 'children': ['98', '103']},{'id': '98', 'type': 'attribute', 'children': ['99', '102']},{'id': '99', 'type': 'subscript', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '101', 'type': 'integer', 'children': [], 'value': '8'},{'id': '102', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '103', 'type': 'argument_list', 'children': ['104']},{'id': '104', 'type': 'string', 'children': [], 'value': "';'"},{'id': '105', 'type': 'integer', 'children': [], 'value': '0'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '107', 'type': 'argument_list', 'children': ['108']},{'id': '108', 'type': 'string', 'children': [], 'value': "' '"},{'id': '109', 'type': 'integer', 'children': [], 'value': '1'},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '111', 'type': 'argument_list', 'children': ['112']},{'id': '112', 'type': 'string', 'children': [], 'value': '\'"\''},{'id': '113', 'type': 'else_clause', 'children': ['114']},{'id': '114', 'type': 'block', 'children': ['115']},{'id': '115', 'type': 'expression_statement', 'children': ['116']},{'id': '116', 'type': 'assignment', 'children': ['117', '118']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '118', 'type': 'call', 'children': ['119', '138']},{'id': '119', 'type': 'attribute', 'children': ['120', '137']},{'id': '120', 'type': 'subscript', 'children': ['121', '136']},{'id': '121', 'type': 'call', 'children': ['122', '134']},{'id': '122', 'type': 'attribute', 'children': ['123', '133']},{'id': '123', 'type': 'subscript', 'children': ['124', '132']},{'id': '124', 'type': 'call', 'children': ['125', '130']},{'id': '125', 'type': 'attribute', 'children': ['126', '129']},{'id': '126', 'type': 'subscript', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '128', 'type': 'integer', 'children': [], 'value': '8'},{'id': '129', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '130', 'type': 'argument_list', 'children': ['131']},{'id': '131', 'type': 'string', 'children': [], 'value': "';'"},{'id': '132', 'type': 'integer', 'children': [], 'value': '1'},{'id': '133', 'type': 'identifier', 'children': [], 'value': 'split'},{'id': '134', 'type': 'argument_list', 'children': ['135']},{'id': '135', 'type': 'string', 'children': [], 'value': "' '"},{'id': '136', 'type': 'integer', 'children': [], 'value': '2'},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '138', 'type': 'argument_list', 'children': ['139']},{'id': '139', 'type': 'string', 'children': [], 'value': '\'"\''},{'id': '140', 'type': 'expression_statement', 'children': ['141']},{'id': '141', 'type': 'assignment', 'children': ['142', '143']},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '143', 'type': 'subscript', 'children': ['144', '145']},{'id': '144', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '145', 'type': 'integer', 'children': [], 'value': '6'},{'id': '146', 'type': 'expression_statement', 'children': ['147']},{'id': '147', 'type': 'call', 'children': ['148', '151']},{'id': '148', 'type': 'attribute', 'children': ['149', '150']},{'id': '149', 'type': 'identifier', 'children': [], 'value': 'bed_lines'},{'id': '150', 'type': 'identifier', 'children': [], 'value': 'append'},{'id': '151', 'type': 'argument_list', 'children': ['152']},{'id': '152', 'type': 'binary_operator', 'children': ['153', '165'], 'value': '+'},{'id': '153', 'type': 'call', 'children': ['154', '157']},{'id': '154', 'type': 'attribute', 'children': ['155', '156']},{'id': '155', 'type': 'string', 'children': [], 'value': "'\\t'"},{'id': '156', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '157', 'type': 'argument_list', 'children': ['158']},{'id': '158', 'type': 'list', 'children': ['159', '160', '161', '162', '163', '164'], 'value': "[chrom, start, end, name, '.',\n strand]"},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'chrom'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'start'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'end'},{'id': '162', 'type': 'identifier', 'children': [], 'value': 'name'},{'id': '163', 'type': 'string', 'children': [], 'value': "'.'"},{'id': '164', 'type': 'identifier', 'children': [], 'value': 'strand'},{'id': '165', 'type': 'string', 'children': [], 'value': "'\\n'"},{'id': '166', 'type': 'expression_statement', 'children': ['167']},{'id': '167', 'type': 'assignment', 'children': ['168', '169']},{'id': '168', 'type': 'identifier', 'children': [], 'value': 'line'},{'id': '169', 'type': 'call', 'children': ['170', '177']},{'id': '170', 'type': 'attribute', 'children': ['171', '176']},{'id': '171', 'type': 'call', 'children': ['172', '175']},{'id': '172', 'type': 'attribute', 'children': ['173', '174']},{'id': '173', 'type': 'identifier', 'children': [], 'value': 'f'},{'id': '174', 'type': 'identifier', 'children': [], 'value': 'readline'},{'id': '175', 'type': 'argument_list', 'children': []},{'id': '176', 'type': 'identifier', 'children': [], 'value': 'strip'},{'id': '177', 'type': 'argument_list', 'children': []},{'id': '178', 'type': 'expression_statement', 'children': ['179']},{'id': '179', 'type': 'assignment', 'children': ['180', '181']},{'id': '180', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '181', 'type': 'call', 'children': ['182', '185']},{'id': '182', 'type': 'attribute', 'children': ['183', '184']},{'id': '183', 'type': 'identifier', 'children': [], 'value': 'pbt'},{'id': '184', 'type': 'identifier', 'children': [], 'value': 'BedTool'},{'id': '185', 'type': 'argument_list', 'children': ['186', '192']},{'id': '186', 'type': 'call', 'children': ['187', '190']},{'id': '187', 'type': 'attribute', 'children': ['188', '189']},{'id': '188', 'type': 'string', 'children': [], 'value': "''"},{'id': '189', 'type': 'identifier', 'children': [], 'value': 'join'},{'id': '190', 'type': 'argument_list', 'children': ['191']},{'id': '191', 'type': 'identifier', 'children': [], 'value': 'bed_lines'},{'id': '192', 'type': 'keyword_argument', 'children': ['193', '194']},{'id': '193', 'type': 'identifier', 'children': [], 'value': 'from_string'},{'id': '194', 'type': 'True', 'children': []},{'id': '195', 'type': 'expression_statement', 'children': ['196']},{'id': '196', 'type': 'assignment', 'children': ['197', '198']},{'id': '197', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '198', 'type': 'call', 'children': ['199', '202']},{'id': '199', 'type': 'attribute', 'children': ['200', '201']},{'id': '200', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '201', 'type': 'identifier', 'children': [], 'value': 'sort'},{'id': '202', 'type': 'argument_list', 'children': []},{'id': '203', 'type': 'if_statement', 'children': ['204', '205']},{'id': '204', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '205', 'type': 'block', 'children': ['206']},{'id': '206', 'type': 'expression_statement', 'children': ['207']},{'id': '207', 'type': 'call', 'children': ['208', '211']},{'id': '208', 'type': 'attribute', 'children': ['209', '210']},{'id': '209', 'type': 'identifier', 'children': [], 'value': 'bt'},{'id': '210', 'type': 'identifier', 'children': [], 'value': 'saveas'},{'id': '211', 'type': 'argument_list', 'children': ['212']},{'id': '212', 'type': 'identifier', 'children': [], 'value': 'out'},{'id': '213', 'type': 'return_statement', 'children': ['214']},{'id': '214', 'type': 'identifier', 'children': [], 'value': 'bt'} | def make_feature_bed(gtf, feature, out=None):
bed_lines = []
with open(gtf) as f:
line = f.readline().strip()
while line != '':
if line[0] != '
line = line.split('\t')
if line[2] == feature:
chrom = line[0]
start = str(int(line[3]) - 1)
end = line[4]
if feature == 'gene':
name = line[8].split(';')[0].split(' ')[1].strip('"')
else:
name = line[8].split(';')[1].split(' ')[2].strip('"')
strand = line[6]
bed_lines.append('\t'.join([chrom, start, end, name, '.',
strand]) + '\n')
line = f.readline().strip()
bt = pbt.BedTool(''.join(bed_lines), from_string=True)
bt = bt.sort()
if out:
bt.saveas(out)
return bt |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'filter'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '10', 'type': 'integer', 'children': [], 'value': '0'},{'id': '11', 'type': 'dictionary_splat_pattern', 'children': ['12']},{'id': '12', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '13', 'type': 'block', 'children': ['14']},{'id': '14', 'type': 'with_statement', 'children': ['15', '23']},{'id': '15', 'type': 'with_clause', 'children': ['16']},{'id': '16', 'type': 'with_item', 'children': ['17']},{'id': '17', 'type': 'as_pattern', 'children': ['18', '21']},{'id': '18', 'type': 'call', 'children': ['19', '20']},{'id': '19', 'type': 'identifier', 'children': [], 'value': 'rconnect'},{'id': '20', 'type': 'argument_list', 'children': []},{'id': '21', 'type': 'as_pattern_target', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'conn'},{'id': '23', 'type': 'block', 'children': ['24', '34']},{'id': '24', 'type': 'if_statement', 'children': ['25', '31']},{'id': '25', 'type': 'comparison_operator', 'children': ['26', '30'], 'value': '=='},{'id': '26', 'type': 'call', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'len'},{'id': '28', 'type': 'argument_list', 'children': ['29']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '30', 'type': 'integer', 'children': [], 'value': '0'},{'id': '31', 'type': 'block', 'children': ['32']},{'id': '32', 'type': 'raise_statement', 'children': ['33']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'ValueError'},{'id': '34', 'type': 'try_statement', 'children': ['35', '99', '113', '127']},{'id': '35', 'type': 'block', 'children': ['36', '44', '53', '68', '83', '90']},{'id': '36', 'type': 'expression_statement', 'children': ['37']},{'id': '37', 'type': 'assignment', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '39', 'type': 'call', 'children': ['40', '43']},{'id': '40', 'type': 'attribute', 'children': ['41', '42']},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '42', 'type': 'identifier', 'children': [], 'value': '_base'},{'id': '43', 'type': 'argument_list', 'children': []},{'id': '44', 'type': 'expression_statement', 'children': ['45']},{'id': '45', 'type': 'assignment', 'children': ['46', '47']},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '47', 'type': 'call', 'children': ['48', '51']},{'id': '48', 'type': 'attribute', 'children': ['49', '50']},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'filter'},{'id': '51', 'type': 'argument_list', 'children': ['52']},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'kwargs'},{'id': '53', 'type': 'if_statement', 'children': ['54', '57']},{'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': 'is'},{'id': '55', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '56', 'type': 'None', 'children': []},{'id': '57', 'type': 'block', 'children': ['58']},{'id': '58', 'type': 'expression_statement', 'children': ['59']},{'id': '59', 'type': 'assignment', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '61', 'type': 'call', 'children': ['62', '65']},{'id': '62', 'type': 'attribute', 'children': ['63', '64']},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '64', 'type': 'identifier', 'children': [], 'value': '_order_by'},{'id': '65', 'type': 'argument_list', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '68', 'type': 'if_statement', 'children': ['69', '72']},{'id': '69', 'type': 'comparison_operator', 'children': ['70', '71'], 'value': '>'},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '71', 'type': 'integer', 'children': [], 'value': '0'},{'id': '72', 'type': 'block', 'children': ['73']},{'id': '73', 'type': 'expression_statement', 'children': ['74']},{'id': '74', 'type': 'assignment', 'children': ['75', '76']},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '76', 'type': 'call', 'children': ['77', '80']},{'id': '77', 'type': 'attribute', 'children': ['78', '79']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '79', 'type': 'identifier', 'children': [], 'value': '_limit'},{'id': '80', 'type': 'argument_list', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '83', 'type': 'expression_statement', 'children': ['84']},{'id': '84', 'type': 'call', 'children': ['85', '88']},{'id': '85', 'type': 'attribute', 'children': ['86', '87']},{'id': '86', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '88', 'type': 'argument_list', 'children': ['89']},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '90', 'type': 'expression_statement', 'children': ['91']},{'id': '91', 'type': 'assignment', 'children': ['92', '93']},{'id': '92', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '93', 'type': 'call', 'children': ['94', '97']},{'id': '94', 'type': 'attribute', 'children': ['95', '96']},{'id': '95', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'run'},{'id': '97', 'type': 'argument_list', 'children': ['98']},{'id': '98', 'type': 'identifier', 'children': [], 'value': 'conn'},{'id': '99', 'type': 'except_clause', 'children': ['100', '104']},{'id': '100', 'type': 'as_pattern', 'children': ['101', '102']},{'id': '101', 'type': 'identifier', 'children': [], 'value': 'ReqlOpFailedError'},{'id': '102', 'type': 'as_pattern_target', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '104', 'type': 'block', 'children': ['105', '112']},{'id': '105', 'type': 'expression_statement', 'children': ['106']},{'id': '106', 'type': 'call', 'children': ['107', '110']},{'id': '107', 'type': 'attribute', 'children': ['108', '109']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '109', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '110', 'type': 'argument_list', 'children': ['111']},{'id': '111', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '112', 'type': 'raise_statement', 'children': []},{'id': '113', 'type': 'except_clause', 'children': ['114', '118']},{'id': '114', 'type': 'as_pattern', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '116', 'type': 'as_pattern_target', 'children': ['117']},{'id': '117', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '118', 'type': 'block', 'children': ['119', '126']},{'id': '119', 'type': 'expression_statement', 'children': ['120']},{'id': '120', 'type': 'call', 'children': ['121', '124']},{'id': '121', 'type': 'attribute', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '124', 'type': 'argument_list', 'children': ['125']},{'id': '125', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '126', 'type': 'raise_statement', 'children': []},{'id': '127', 'type': 'else_clause', 'children': ['128']},{'id': '128', 'type': 'block', 'children': ['129', '142']},{'id': '129', 'type': 'expression_statement', 'children': ['130']},{'id': '130', 'type': 'assignment', 'children': ['131', '132']},{'id': '131', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '132', 'type': 'list_comprehension', 'children': ['133', '139']},{'id': '133', 'type': 'call', 'children': ['134', '137']},{'id': '134', 'type': 'attribute', 'children': ['135', '136']},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '136', 'type': 'identifier', 'children': [], 'value': '_model'},{'id': '137', 'type': 'argument_list', 'children': ['138']},{'id': '138', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '139', 'type': 'for_in_clause', 'children': ['140', '141']},{'id': '140', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '141', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '142', 'type': 'return_statement', 'children': ['143']},{'id': '143', 'type': 'identifier', 'children': [], 'value': 'data'} | def filter(self, order_by=None, limit=0, **kwargs):
with rconnect() as conn:
if len(kwargs) == 0:
raise ValueError
try:
query = self._base()
query = query.filter(kwargs)
if order_by is not None:
query = self._order_by(query, order_by)
if limit > 0:
query = self._limit(query, limit)
log.debug(query)
rv = query.run(conn)
except ReqlOpFailedError as e:
log.warn(e)
raise
except Exception as e:
log.warn(e)
raise
else:
data = [self._model(_) for _ in rv]
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'all'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '7', 'type': 'None', 'children': []},{'id': '8', 'type': 'default_parameter', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '10', 'type': 'integer', 'children': [], 'value': '0'},{'id': '11', 'type': 'block', 'children': ['12']},{'id': '12', 'type': 'with_statement', 'children': ['13', '21']},{'id': '13', 'type': 'with_clause', 'children': ['14']},{'id': '14', 'type': 'with_item', 'children': ['15']},{'id': '15', 'type': 'as_pattern', 'children': ['16', '19']},{'id': '16', 'type': 'call', 'children': ['17', '18']},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'rconnect'},{'id': '18', 'type': 'argument_list', 'children': []},{'id': '19', 'type': 'as_pattern_target', 'children': ['20']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'conn'},{'id': '21', 'type': 'block', 'children': ['22']},{'id': '22', 'type': 'try_statement', 'children': ['23', '78', '92']},{'id': '23', 'type': 'block', 'children': ['24', '32', '47', '62', '69']},{'id': '24', 'type': 'expression_statement', 'children': ['25']},{'id': '25', 'type': 'assignment', 'children': ['26', '27']},{'id': '26', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '27', 'type': 'call', 'children': ['28', '31']},{'id': '28', 'type': 'attribute', 'children': ['29', '30']},{'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '30', 'type': 'identifier', 'children': [], 'value': '_base'},{'id': '31', 'type': 'argument_list', 'children': []},{'id': '32', 'type': 'if_statement', 'children': ['33', '36']},{'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'is'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '35', 'type': 'None', 'children': []},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'assignment', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '40', 'type': 'call', 'children': ['41', '44']},{'id': '41', 'type': 'attribute', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '43', 'type': 'identifier', 'children': [], 'value': '_order_by'},{'id': '44', 'type': 'argument_list', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'order_by'},{'id': '47', 'type': 'if_statement', 'children': ['48', '51']},{'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': '>'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '50', 'type': 'integer', 'children': [], 'value': '0'},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'assignment', 'children': ['54', '55']},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '55', 'type': 'call', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '58', 'type': 'identifier', 'children': [], 'value': '_limit'},{'id': '59', 'type': 'argument_list', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'limit'},{'id': '62', 'type': 'expression_statement', 'children': ['63']},{'id': '63', 'type': 'call', 'children': ['64', '67']},{'id': '64', 'type': 'attribute', 'children': ['65', '66']},{'id': '65', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'debug'},{'id': '67', 'type': 'argument_list', 'children': ['68']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '69', 'type': 'expression_statement', 'children': ['70']},{'id': '70', 'type': 'assignment', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '72', 'type': 'call', 'children': ['73', '76']},{'id': '73', 'type': 'attribute', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'query'},{'id': '75', 'type': 'identifier', 'children': [], 'value': 'run'},{'id': '76', 'type': 'argument_list', 'children': ['77']},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'conn'},{'id': '78', 'type': 'except_clause', 'children': ['79', '83']},{'id': '79', 'type': 'as_pattern', 'children': ['80', '81']},{'id': '80', 'type': 'identifier', 'children': [], 'value': 'Exception'},{'id': '81', 'type': 'as_pattern_target', 'children': ['82']},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '83', 'type': 'block', 'children': ['84', '91']},{'id': '84', 'type': 'expression_statement', 'children': ['85']},{'id': '85', 'type': 'call', 'children': ['86', '89']},{'id': '86', 'type': 'attribute', 'children': ['87', '88']},{'id': '87', 'type': 'identifier', 'children': [], 'value': 'log'},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'warn'},{'id': '89', 'type': 'argument_list', 'children': ['90']},{'id': '90', 'type': 'identifier', 'children': [], 'value': 'e'},{'id': '91', 'type': 'raise_statement', 'children': []},{'id': '92', 'type': 'else_clause', 'children': ['93']},{'id': '93', 'type': 'block', 'children': ['94', '107']},{'id': '94', 'type': 'expression_statement', 'children': ['95']},{'id': '95', 'type': 'assignment', 'children': ['96', '97']},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'data'},{'id': '97', 'type': 'list_comprehension', 'children': ['98', '104']},{'id': '98', 'type': 'call', 'children': ['99', '102']},{'id': '99', 'type': 'attribute', 'children': ['100', '101']},{'id': '100', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '101', 'type': 'identifier', 'children': [], 'value': '_model'},{'id': '102', 'type': 'argument_list', 'children': ['103']},{'id': '103', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '104', 'type': 'for_in_clause', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': '_'},{'id': '106', 'type': 'identifier', 'children': [], 'value': 'rv'},{'id': '107', 'type': 'return_statement', 'children': ['108']},{'id': '108', 'type': 'identifier', 'children': [], 'value': 'data'} | def all(self, order_by=None, limit=0):
with rconnect() as conn:
try:
query = self._base()
if order_by is not None:
query = self._order_by(query, order_by)
if limit > 0:
query = self._limit(query, limit)
log.debug(query)
rv = query.run(conn)
except Exception as e:
log.warn(e)
raise
else:
data = [self._model(_) for _ in rv]
return data |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'safe_dump_js'},{'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'js'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '6', 'type': 'default_parameter', 'children': ['7', '8']},{'id': '7', 'type': 'identifier', 'children': [], 'value': 'fastmode'},{'id': '8', 'type': 'False', 'children': []},{'id': '9', 'type': 'default_parameter', 'children': ['10', '11']},{'id': '10', 'type': 'identifier', 'children': [], 'value': 'compress'},{'id': '11', 'type': 'False', 'children': []},{'id': '12', 'type': 'default_parameter', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'enable_verbose'},{'id': '14', 'type': 'True', 'children': []},{'id': '15', 'type': 'block', 'children': ['16', '23', '29', '47']},{'id': '16', 'type': 'expression_statement', 'children': ['17']},{'id': '17', 'type': 'assignment', 'children': ['18', '19']},{'id': '18', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '19', 'type': 'call', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'str'},{'id': '21', 'type': 'argument_list', 'children': ['22']},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '23', 'type': 'expression_statement', 'children': ['24']},{'id': '24', 'type': 'assignment', 'children': ['25', '26']},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'temp_abspath'},{'id': '26', 'type': 'binary_operator', 'children': ['27', '28'], 'value': '%'},{'id': '27', 'type': 'string', 'children': [], 'value': '"%s.tmp"'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'abspath'},{'id': '29', 'type': 'expression_statement', 'children': ['30']},{'id': '30', 'type': 'call', 'children': ['31', '32']},{'id': '31', 'type': 'identifier', 'children': [], 'value': 'dump_js'},{'id': '32', 'type': 'argument_list', 'children': ['33', '34', '35', '38', '41', '44']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'js'},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'temp_abspath'},{'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'fastmode'},{'id': '37', 'type': 'identifier', 'children': [], 'value': 'fastmode'},{'id': '38', 'type': 'keyword_argument', 'children': ['39', '40']},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'replace'},{'id': '40', 'type': 'True', 'children': []},{'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']},{'id': '42', 'type': 'identifier', 'children': [], 'value': 'compress'},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'compress'},{'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'enable_verbose'},{'id': '46', 'type': 'identifier', 'children': [], 'value': 'enable_verbose'},{'id': '47', 'type': 'expression_statement', 'children': ['48']},{'id': '48', 'type': 'call', 'children': ['49', '52']},{'id': '49', 'type': 'attribute', 'children': ['50', '51']},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'shutil'},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'move'},{'id': '52', 'type': 'argument_list', 'children': ['53', '54']},{'id': '53', 'type': 'identifier', 'children': [], 'value': 'temp_abspath'},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'abspath'} | def safe_dump_js(js, abspath,
fastmode=False, compress=False, enable_verbose=True):
abspath = str(abspath)
temp_abspath = "%s.tmp" % abspath
dump_js(js, temp_abspath, fastmode=fastmode,
replace=True, compress=compress, enable_verbose=enable_verbose)
shutil.move(temp_abspath, abspath) |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'all_selectors'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'Class'},{'id': '5', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '6', 'type': 'block', 'children': ['7', '11', '22', '31', '64', '77']},{'id': '7', 'type': 'expression_statement', 'children': ['8']},{'id': '8', 'type': 'assignment', 'children': ['9', '10']},{'id': '9', 'type': 'identifier', 'children': [], 'value': 'selectors'},{'id': '10', 'type': 'list', 'children': [], 'value': '[]'},{'id': '11', 'type': 'expression_statement', 'children': ['12']},{'id': '12', 'type': 'assignment', 'children': ['13', '14']},{'id': '13', 'type': 'identifier', 'children': [], 'value': 'cssparser'},{'id': '14', 'type': 'call', 'children': ['15', '18']},{'id': '15', 'type': 'attribute', 'children': ['16', '17']},{'id': '16', 'type': 'identifier', 'children': [], 'value': 'cssutils'},{'id': '17', 'type': 'identifier', 'children': [], 'value': 'CSSParser'},{'id': '18', 'type': 'argument_list', 'children': ['19']},{'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']},{'id': '20', 'type': 'identifier', 'children': [], 'value': 'validate'},{'id': '21', 'type': 'False', 'children': []},{'id': '22', 'type': 'expression_statement', 'children': ['23']},{'id': '23', 'type': 'assignment', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'css'},{'id': '25', 'type': 'call', 'children': ['26', '29']},{'id': '26', 'type': 'attribute', 'children': ['27', '28']},{'id': '27', 'type': 'identifier', 'children': [], 'value': 'cssparser'},{'id': '28', 'type': 'identifier', 'children': [], 'value': 'parseFile'},{'id': '29', 'type': 'argument_list', 'children': ['30']},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'fn'},{'id': '31', 'type': 'for_statement', 'children': ['32', '33', '51']},{'id': '32', 'type': 'identifier', 'children': [], 'value': 'rule'},{'id': '33', 'type': 'list_comprehension', 'children': ['34', '35', '40']},{'id': '34', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '35', 'type': 'for_in_clause', 'children': ['36', '37']},{'id': '36', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '37', 'type': 'attribute', 'children': ['38', '39']},{'id': '38', 'type': 'identifier', 'children': [], 'value': 'css'},{'id': '39', 'type': 'identifier', 'children': [], 'value': 'cssRules'},{'id': '40', 'type': 'if_clause', 'children': ['41']},{'id': '41', 'type': 'comparison_operator', 'children': ['42', '46'], 'value': '=='},{'id': '42', 'type': 'call', 'children': ['43', '44']},{'id': '43', 'type': 'identifier', 'children': [], 'value': 'type'},{'id': '44', 'type': 'argument_list', 'children': ['45']},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'r'},{'id': '46', 'type': 'attribute', 'children': ['47', '50']},{'id': '47', 'type': 'attribute', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'cssutils'},{'id': '49', 'type': 'identifier', 'children': [], 'value': 'css'},{'id': '50', 'type': 'identifier', 'children': [], 'value': 'CSSStyleRule'},{'id': '51', 'type': 'block', 'children': ['52']},{'id': '52', 'type': 'expression_statement', 'children': ['53']},{'id': '53', 'type': 'augmented_assignment', 'children': ['54', '55'], 'value': '+='},{'id': '54', 'type': 'identifier', 'children': [], 'value': 'selectors'},{'id': '55', 'type': 'list_comprehension', 'children': ['56', '59']},{'id': '56', 'type': 'attribute', 'children': ['57', '58']},{'id': '57', 'type': 'identifier', 'children': [], 'value': 'sel'},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'selectorText'},{'id': '59', 'type': 'for_in_clause', 'children': ['60', '61']},{'id': '60', 'type': 'identifier', 'children': [], 'value': 'sel'},{'id': '61', 'type': 'attribute', 'children': ['62', '63']},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'rule'},{'id': '63', 'type': 'identifier', 'children': [], 'value': 'selectorList'},{'id': '64', 'type': 'expression_statement', 'children': ['65']},{'id': '65', 'type': 'assignment', 'children': ['66', '67']},{'id': '66', 'type': 'identifier', 'children': [], 'value': 'selectors'},{'id': '67', 'type': 'call', 'children': ['68', '69']},{'id': '68', 'type': 'identifier', 'children': [], 'value': 'sorted'},{'id': '69', 'type': 'argument_list', 'children': ['70']},{'id': '70', 'type': 'call', 'children': ['71', '72']},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'list'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'call', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'set'},{'id': '75', 'type': 'argument_list', 'children': ['76']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'selectors'},{'id': '77', 'type': 'return_statement', 'children': ['78']},{'id': '78', 'type': 'identifier', 'children': [], 'value': 'selectors'} | def all_selectors(Class, fn):
selectors = []
cssparser = cssutils.CSSParser(validate=False)
css = cssparser.parseFile(fn)
for rule in [r for r in css.cssRules if type(r)==cssutils.css.CSSStyleRule]:
selectors += [sel.selectorText for sel in rule.selectorList]
selectors = sorted(list(set(selectors)))
return selectors |
{'id': '0', 'type': 'module', 'children': ['1']},{'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']},{'id': '2', 'type': 'function_name', 'children': [], 'value': 'create_logger'},{'id': '3', 'type': 'parameters', 'children': ['4', '5']},{'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '5', 'type': 'default_parameter', 'children': ['6', '7']},{'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '7', 'type': 'dictionary', 'children': []},{'id': '8', 'type': 'block', 'children': ['9', '18', '26', '46', '56', '65', '78', '85', '92', '138', '156']},{'id': '9', 'type': 'expression_statement', 'children': ['10']},{'id': '10', 'type': 'assignment', 'children': ['11', '12']},{'id': '11', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '12', 'type': 'call', 'children': ['13', '16']},{'id': '13', 'type': 'attribute', 'children': ['14', '15']},{'id': '14', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '15', 'type': 'identifier', 'children': [], 'value': 'getLogger'},{'id': '16', 'type': 'argument_list', 'children': ['17']},{'id': '17', 'type': 'string', 'children': [], 'value': '"SmartFileSorter"'},{'id': '18', 'type': 'expression_statement', 'children': ['19']},{'id': '19', 'type': 'assignment', 'children': ['20', '23']},{'id': '20', 'type': 'attribute', 'children': ['21', '22']},{'id': '21', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '22', 'type': 'identifier', 'children': [], 'value': 'level'},{'id': '23', 'type': 'attribute', 'children': ['24', '25']},{'id': '24', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '25', 'type': 'identifier', 'children': [], 'value': 'INFO'},{'id': '26', 'type': 'if_statement', 'children': ['27', '36']},{'id': '27', 'type': 'boolean_operator', 'children': ['28', '31'], 'value': 'and'},{'id': '28', 'type': 'comparison_operator', 'children': ['29', '30'], 'value': 'in'},{'id': '29', 'type': 'string', 'children': [], 'value': "'--debug'"},{'id': '30', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '31', 'type': 'comparison_operator', 'children': ['32', '35'], 'value': 'is'},{'id': '32', 'type': 'subscript', 'children': ['33', '34']},{'id': '33', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '34', 'type': 'string', 'children': [], 'value': "'--debug'"},{'id': '35', 'type': 'True', 'children': []},{'id': '36', 'type': 'block', 'children': ['37']},{'id': '37', 'type': 'expression_statement', 'children': ['38']},{'id': '38', 'type': 'call', 'children': ['39', '42']},{'id': '39', 'type': 'attribute', 'children': ['40', '41']},{'id': '40', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '41', 'type': 'identifier', 'children': [], 'value': 'setLevel'},{'id': '42', 'type': 'argument_list', 'children': ['43']},{'id': '43', 'type': 'attribute', 'children': ['44', '45']},{'id': '44', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '45', 'type': 'identifier', 'children': [], 'value': 'DEBUG'},{'id': '46', 'type': 'expression_statement', 'children': ['47']},{'id': '47', 'type': 'assignment', 'children': ['48', '49']},{'id': '48', 'type': 'identifier', 'children': [], 'value': 'file_log_formatter'},{'id': '49', 'type': 'call', 'children': ['50', '53']},{'id': '50', 'type': 'attribute', 'children': ['51', '52']},{'id': '51', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '52', 'type': 'identifier', 'children': [], 'value': 'Formatter'},{'id': '53', 'type': 'argument_list', 'children': ['54', '55']},{'id': '54', 'type': 'string', 'children': [], 'value': "'%(asctime)s %(name)s %(levelname)s %(message)s'"},{'id': '55', 'type': 'string', 'children': [], 'value': "'%Y-%m-%d %H:%M:%S'"},{'id': '56', 'type': 'expression_statement', 'children': ['57']},{'id': '57', 'type': 'assignment', 'children': ['58', '59']},{'id': '58', 'type': 'identifier', 'children': [], 'value': 'console_log_formatter'},{'id': '59', 'type': 'call', 'children': ['60', '63']},{'id': '60', 'type': 'attribute', 'children': ['61', '62']},{'id': '61', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '62', 'type': 'identifier', 'children': [], 'value': 'Formatter'},{'id': '63', 'type': 'argument_list', 'children': ['64']},{'id': '64', 'type': 'string', 'children': [], 'value': "'%(message)s'"},{'id': '65', 'type': 'expression_statement', 'children': ['66']},{'id': '66', 'type': 'assignment', 'children': ['67', '68']},{'id': '67', 'type': 'identifier', 'children': [], 'value': 'stdout_stream'},{'id': '68', 'type': 'call', 'children': ['69', '72']},{'id': '69', 'type': 'attribute', 'children': ['70', '71']},{'id': '70', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '71', 'type': 'identifier', 'children': [], 'value': 'StreamHandler'},{'id': '72', 'type': 'argument_list', 'children': ['73']},{'id': '73', 'type': 'keyword_argument', 'children': ['74', '75']},{'id': '74', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '75', 'type': 'attribute', 'children': ['76', '77']},{'id': '76', 'type': 'identifier', 'children': [], 'value': 'sys'},{'id': '77', 'type': 'identifier', 'children': [], 'value': 'stdout'},{'id': '78', 'type': 'expression_statement', 'children': ['79']},{'id': '79', 'type': 'call', 'children': ['80', '83']},{'id': '80', 'type': 'attribute', 'children': ['81', '82']},{'id': '81', 'type': 'identifier', 'children': [], 'value': 'stdout_stream'},{'id': '82', 'type': 'identifier', 'children': [], 'value': 'setFormatter'},{'id': '83', 'type': 'argument_list', 'children': ['84']},{'id': '84', 'type': 'identifier', 'children': [], 'value': 'console_log_formatter'},{'id': '85', 'type': 'expression_statement', 'children': ['86']},{'id': '86', 'type': 'call', 'children': ['87', '90']},{'id': '87', 'type': 'attribute', 'children': ['88', '89']},{'id': '88', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '89', 'type': 'identifier', 'children': [], 'value': 'addHandler'},{'id': '90', 'type': 'argument_list', 'children': ['91']},{'id': '91', 'type': 'identifier', 'children': [], 'value': 'stdout_stream'},{'id': '92', 'type': 'if_statement', 'children': ['93', '102']},{'id': '93', 'type': 'boolean_operator', 'children': ['94', '97'], 'value': 'and'},{'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': 'in'},{'id': '95', 'type': 'string', 'children': [], 'value': "'--log'"},{'id': '96', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '97', 'type': 'comparison_operator', 'children': ['98', '101'], 'value': 'is'},{'id': '98', 'type': 'subscript', 'children': ['99', '100']},{'id': '99', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '100', 'type': 'string', 'children': [], 'value': "'--log'"},{'id': '101', 'type': 'None', 'children': []},{'id': '102', 'type': 'block', 'children': ['103', '113', '124', '131']},{'id': '103', 'type': 'expression_statement', 'children': ['104']},{'id': '104', 'type': 'assignment', 'children': ['105', '106']},{'id': '105', 'type': 'identifier', 'children': [], 'value': 'logfile'},{'id': '106', 'type': 'call', 'children': ['107', '108']},{'id': '107', 'type': 'identifier', 'children': [], 'value': 'open'},{'id': '108', 'type': 'argument_list', 'children': ['109', '112']},{'id': '109', 'type': 'subscript', 'children': ['110', '111']},{'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '111', 'type': 'string', 'children': [], 'value': "'--log'"},{'id': '112', 'type': 'string', 'children': [], 'value': "'w'"},{'id': '113', 'type': 'expression_statement', 'children': ['114']},{'id': '114', 'type': 'assignment', 'children': ['115', '116']},{'id': '115', 'type': 'identifier', 'children': [], 'value': 'logfile_stream'},{'id': '116', 'type': 'call', 'children': ['117', '120']},{'id': '117', 'type': 'attribute', 'children': ['118', '119']},{'id': '118', 'type': 'identifier', 'children': [], 'value': 'logging'},{'id': '119', 'type': 'identifier', 'children': [], 'value': 'StreamHandler'},{'id': '120', 'type': 'argument_list', 'children': ['121']},{'id': '121', 'type': 'keyword_argument', 'children': ['122', '123']},{'id': '122', 'type': 'identifier', 'children': [], 'value': 'stream'},{'id': '123', 'type': 'identifier', 'children': [], 'value': 'logfile'},{'id': '124', 'type': 'expression_statement', 'children': ['125']},{'id': '125', 'type': 'call', 'children': ['126', '129']},{'id': '126', 'type': 'attribute', 'children': ['127', '128']},{'id': '127', 'type': 'identifier', 'children': [], 'value': 'logfile_stream'},{'id': '128', 'type': 'identifier', 'children': [], 'value': 'setFormatter'},{'id': '129', 'type': 'argument_list', 'children': ['130']},{'id': '130', 'type': 'identifier', 'children': [], 'value': 'file_log_formatter'},{'id': '131', 'type': 'expression_statement', 'children': ['132']},{'id': '132', 'type': 'call', 'children': ['133', '136']},{'id': '133', 'type': 'attribute', 'children': ['134', '135']},{'id': '134', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '135', 'type': 'identifier', 'children': [], 'value': 'addHandler'},{'id': '136', 'type': 'argument_list', 'children': ['137']},{'id': '137', 'type': 'identifier', 'children': [], 'value': 'logfile_stream'},{'id': '138', 'type': 'if_statement', 'children': ['139', '148']},{'id': '139', 'type': 'boolean_operator', 'children': ['140', '143'], 'value': 'and'},{'id': '140', 'type': 'comparison_operator', 'children': ['141', '142'], 'value': 'in'},{'id': '141', 'type': 'string', 'children': [], 'value': "'--dry-run'"},{'id': '142', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '143', 'type': 'comparison_operator', 'children': ['144', '147'], 'value': 'is'},{'id': '144', 'type': 'subscript', 'children': ['145', '146']},{'id': '145', 'type': 'identifier', 'children': [], 'value': 'args'},{'id': '146', 'type': 'string', 'children': [], 'value': "'--dry-run'"},{'id': '147', 'type': 'True', 'children': []},{'id': '148', 'type': 'block', 'children': ['149']},{'id': '149', 'type': 'expression_statement', 'children': ['150']},{'id': '150', 'type': 'call', 'children': ['151', '154']},{'id': '151', 'type': 'attribute', 'children': ['152', '153']},{'id': '152', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '153', 'type': 'identifier', 'children': [], 'value': 'info'},{'id': '154', 'type': 'argument_list', 'children': ['155']},{'id': '155', 'type': 'string', 'children': [], 'value': "'Running with --dry-run parameter. Actions will not be performed.'"},{'id': '156', 'type': 'expression_statement', 'children': ['157']},{'id': '157', 'type': 'assignment', 'children': ['158', '161']},{'id': '158', 'type': 'attribute', 'children': ['159', '160']},{'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'},{'id': '160', 'type': 'identifier', 'children': [], 'value': 'logger'},{'id': '161', 'type': 'identifier', 'children': [], 'value': 'logger'} | def create_logger(self, args={}):
logger = logging.getLogger("SmartFileSorter")
logger.level = logging.INFO
if '--debug' in args and args['--debug'] is True:
logger.setLevel(logging.DEBUG)
file_log_formatter = logging.Formatter('%(asctime)s %(name)s %(levelname)s %(message)s',
'%Y-%m-%d %H:%M:%S')
console_log_formatter = logging.Formatter('%(message)s')
stdout_stream = logging.StreamHandler(stream=sys.stdout)
stdout_stream.setFormatter(console_log_formatter)
logger.addHandler(stdout_stream)
if '--log' in args and args['--log'] is not None:
logfile = open(args['--log'], 'w')
logfile_stream = logging.StreamHandler(stream=logfile)
logfile_stream.setFormatter(file_log_formatter)
logger.addHandler(logfile_stream)
if '--dry-run' in args and args['--dry-run'] is True:
logger.info('Running with --dry-run parameter. Actions will not be performed.')
self.logger = logger |
Subsets and Splits