input
stringlengths 205
73.3k
| output
stringlengths 64
73.2k
| instruction
stringclasses 1
value |
|---|---|---|
#vulnerable code
private static List<String> getWorldGuardRegionNames(User user) {
Location location = user.getPlayer().getLocation();
if (location != null) {
List<String> regionNames = WorldGuardHook.getRegionNames(location);
if (regionNames != null && !regionNames.isEmpty()) {
return regionNames;
}
}
return null;
}
#location 2
#vulnerability type NULL_DEREFERENCE | #fixed code
private static List<String> getWorldGuardRegionNames(User user) {
if (user == null || user.getPlayer() == null) {
return Collections.emptyList();
}
Location location = user.getPlayer().getLocation();
if (location != null) {
List<String> regionNames = WorldGuardHook.getRegionNames(location);
if (regionNames != null && !regionNames.isEmpty()) {
return regionNames;
}
}
return null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
if (args.length < 1) {
sender.sendMessage(messages.generalNoTagGiven);
return;
} else if (args.length < 2) {
sender.sendMessage(messages.adminNoBanTimeGiven);
return;
} else if (args.length < 3) {
sender.sendMessage(messages.adminNoReasonGiven);
return;
}
if (!GuildUtils.tagExists(args[0])) {
sender.sendMessage(messages.generalNoGuildFound);
return;
}
Guild guild = GuildUtils.byTag(args[0]);
if (guild.isBanned()) {
sender.sendMessage(messages.adminGuildBanned);
return;
}
long time = Parser.parseTime(args[1]);
if (time < 1) {
sender.sendMessage(messages.adminTimeError);
return;
}
StringBuilder sb = new StringBuilder();
for (int i = 2; i < args.length; i++) {
sb.append(args[i]);
sb.append(" ");
}
String reason = sb.toString();
BanUtils.ban(guild, time, reason);
sender.sendMessage(messages.adminGuildBan.replace("{GUILD}", guild.getName()).replace("{TIME}", args[1]));
Bukkit.broadcastMessage(Messages.getInstance().broadcastBan.replace("{GUILD}", guild.getName())
.replace("{TAG}", guild.getTag()).replace("{REASON}", StringUtils.colored(reason)).replace("{TIME}", args[1]));
}
#location 22
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
if (args.length < 1) {
sender.sendMessage(messages.generalNoTagGiven);
return;
} else if (args.length < 2) {
sender.sendMessage(messages.adminNoBanTimeGiven);
return;
} else if (args.length < 3) {
sender.sendMessage(messages.adminNoReasonGiven);
return;
}
Guild guild = GuildUtils.get(args[0]);
if (guild == null) {
sender.sendMessage(messages.generalNoGuildFound);
return;
}
if (guild.isBanned()) {
sender.sendMessage(messages.adminGuildBanned);
return;
}
long time = Parser.parseTime(args[1]);
if (time < 1) {
sender.sendMessage(messages.adminTimeError);
return;
}
StringBuilder reasonBuilder = new StringBuilder();
for (int i = 2; i < args.length; i++) {
reasonBuilder.append(args[i]);
reasonBuilder.append(" ");
}
String reason = reasonBuilder.toString();
BanUtils.ban(guild, time, reason);
MessageTranslator translator = new MessageTranslator()
.register("{GUILD", guild.getName())
.register("{TAG}", guild.getTag())
.register("{TIME}", args[1])
.register("{REASON}", StringUtils.colored(reason));
sender.sendMessage(translator.translate(messages.adminGuildBan));
Bukkit.broadcastMessage(translator.translate(messages.broadcastBan));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void remove(User user) {
this.users.remove(user.getRank());
synchronized (users) {
Collections.sort(this.users);
}
}
#location 2
#vulnerability type THREAD_SAFETY_VIOLATION | #fixed code
public void remove(User user) {
this.users.remove(user.getRank());
Collections.sort(this.users);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig m = Messages.getInstance();
Player p = (Player) sender;
User u = User.get(p);
if (!u.hasGuild()) {
p.sendMessage(m.kickHasNotGuild);
return;
}
if (!u.isOwner() && !u.isDeputy()) {
p.sendMessage(m.kickIsNotOwner);
return;
}
if (args.length < 1) {
p.sendMessage(m.kickPlayer);
return;
}
User uk = User.get(args[0]);
OfflineUser up = uk.getOfflineUser();
if (!uk.hasGuild()) {
p.sendMessage(m.kickToHasNotGuild);
return;
}
if (!u.getGuild().equals(uk.getGuild())) {
p.sendMessage(m.kickOtherGuild);
return;
}
if (uk.isOwner()) {
p.sendMessage(m.kickOwner);
return;
}
Guild guild = u.getGuild();
IndependentThread.action(ActionType.PREFIX_GLOBAL_REMOVE_PLAYER, up);
guild.removeMember(uk);
uk.removeGuild();
if (up.isOnline()) {
IndependentThread.action(ActionType.PREFIX_GLOBAL_UPDATE_PLAYER, p);
}
p.sendMessage(m.kickToOwner.replace("{PLAYER}", uk.getName()));
Player pk = uk.getPlayer();
if (pk != null) {
pk.sendMessage(m.kickToPlayer.replace("{GUILD}", guild.getName()));
}
Bukkit.broadcastMessage(m.broadcastKick.replace("{PLAYER}", uk.getName()).replace("{GUILD}", guild.getName()).replace("{TAG}", guild.getTag()));
}
#location 8
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!user.hasGuild()) {
player.sendMessage(messages.kickHasNotGuild);
return;
}
if (!user.isOwner() && !user.isDeputy()) {
player.sendMessage(messages.kickIsNotOwner);
return;
}
if (args.length < 1) {
player.sendMessage(messages.kickPlayer);
return;
}
User formerUser = User.get(args[0]);
OfflineUser formerOffline = formerUser.getOfflineUser();
if (!formerUser.hasGuild()) {
player.sendMessage(messages.kickToHasNotGuild);
return;
}
if (!user.getGuild().equals(formerUser.getGuild())) {
player.sendMessage(messages.kickOtherGuild);
return;
}
if (formerUser.isOwner()) {
player.sendMessage(messages.kickOwner);
return;
}
Guild guild = user.getGuild();
IndependentThread.action(ActionType.PREFIX_GLOBAL_REMOVE_PLAYER, formerOffline);
guild.removeMember(formerUser);
formerUser.removeGuild();
if (formerOffline.isOnline()) {
IndependentThread.action(ActionType.PREFIX_GLOBAL_UPDATE_PLAYER, player);
}
MessageTranslator translator = new MessageTranslator()
.register("{PLAYER}", formerUser.getName())
.register("{GUILD}", guild.getName())
.register("{TAG}", guild.getTag());
player.sendMessage(translator.translate(messages.kickToOwner));
Bukkit.broadcastMessage(translator.translate(messages.broadcastKick));
Player formerPlayer = formerUser.getPlayer();
if (formerPlayer != null) {
formerPlayer.sendMessage(translator.translate(messages.kickToPlayer));
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig m = Messages.getInstance();
User user = User.get((Player) sender);
if (user.isSpy()) {
user.setSpy(false);
sender.sendMessage(m.adminStopSpy);
} else {
user.setSpy(true);
sender.sendMessage(m.adminStartSpy);
}
}
#location 11
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
User user = User.get((Player) sender);
if (user.isSpy()) {
user.setSpy(false);
sender.sendMessage(messages.adminStopSpy);
} else {
user.setSpy(true);
sender.sendMessage(messages.adminStartSpy);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static List<String> getRegionNames(Location location) {
if (!isInRegion(location)) {
return null;
}
List<String> regionNames = new ArrayList<>();
getRegionSet(location).getRegions().forEach(r -> regionNames.add(r.getId()));
return regionNames;
}
#location 7
#vulnerability type NULL_DEREFERENCE | #fixed code
public static List<String> getRegionNames(Location location) {
ApplicableRegionSet regionSet = getRegionSet(location);
return regionSet != null ? regionSet.getRegions().stream().map(ProtectedRegion::getId)
.collect(Collectors.toList())
: null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void remove(Guild guild) {
this.guilds.remove(guild.getRank());
synchronized (guilds) {
Collections.sort(this.guilds);
}
}
#location 2
#vulnerability type THREAD_SAFETY_VIOLATION | #fixed code
public void remove(Guild guild) {
this.guilds.remove(guild.getRank());
Collections.sort(this.guilds);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@EventHandler
public void onDamage(EntityDamageByEntityEvent event) {
Entity entity = event.getEntity();
Entity damager = event.getDamager();
if (! (entity instanceof Player)) {
return;
}
Player attacker = null;
if (damager instanceof Player) {
attacker = (Player) damager;
}
else if (damager instanceof Projectile) {
ProjectileSource shooter = ((Projectile) damager).getShooter();
if (shooter instanceof Player) {
attacker = (Player) shooter;
}
}
if (attacker == null) {
return;
}
PluginConfiguration config = FunnyGuilds.getInstance().getPluginConfiguration();
User victimUser = User.get((Player) event.getEntity());
User attackerUser = User.get(attacker);
if (victimUser.hasGuild() && attackerUser.hasGuild()) {
if (victimUser.getUUID().equals(attackerUser.getUUID())) {
return;
}
if (victimUser.getGuild().equals(attackerUser.getGuild())) {
if (!victimUser.getGuild().getPvP()) {
event.setCancelled(true);
return;
}
}
if (victimUser.getGuild().getAllies().contains(attackerUser.getGuild())) {
if (!config.damageAlly) {
event.setCancelled(true);
return;
}
if (! (attackerUser.getGuild().getPvP(victimUser.getGuild()) && victimUser.getGuild().getPvP(attackerUser.getGuild()))) {
event.setCancelled(true);
return;
}
}
}
if (attacker.equals(entity)) {
return;
}
if (config.assistEnable && !event.isCancelled()) {
if (PluginHook.isPresent(PluginHook.PLUGIN_WORLDGUARD) && PluginHook.WORLD_GUARD.isInIgnoredRegion(entity.getLocation())) {
return;
}
victimUser.getCache().addDamage(attackerUser, event.getDamage());
}
}
#location 65
#vulnerability type NULL_DEREFERENCE | #fixed code
@EventHandler
public void onDamage(EntityDamageByEntityEvent event) {
EntityUtils.getAttacker(event.getDamager()).peek(attacker -> {
PluginConfiguration config = FunnyGuilds.getInstance().getPluginConfiguration();
User attackerUser = User.get(attacker);
Entity victim = event.getEntity();
if (config.animalsProtection && (victim instanceof Animals || victim instanceof Villager)) {
RegionUtils.getAtOpt(victim.getLocation())
.map(Region::getGuild)
.filterNot(guild -> guild.equals(attackerUser.getGuild()))
.peek(guild -> event.setCancelled(true));
return;
}
if (!(victim instanceof Player)) {
return;
}
User victimUser = User.get((Player) event.getEntity());
if (victimUser.hasGuild() && attackerUser.hasGuild()) {
if (victimUser.getUUID().equals(attackerUser.getUUID())) {
return;
}
if (victimUser.getGuild().equals(attackerUser.getGuild())) {
if (!victimUser.getGuild().getPvP()) {
event.setCancelled(true);
return;
}
}
if (victimUser.getGuild().getAllies().contains(attackerUser.getGuild())) {
if (!config.damageAlly) {
event.setCancelled(true);
return;
}
if (! (attackerUser.getGuild().getPvP(victimUser.getGuild()) && victimUser.getGuild().getPvP(attackerUser.getGuild()))) {
event.setCancelled(true);
return;
}
}
}
if (attacker.equals(victim)) {
return;
}
if (config.assistEnable && !event.isCancelled()) {
if (PluginHook.isPresent(PluginHook.PLUGIN_WORLDGUARD) && PluginHook.WORLD_GUARD.isInIgnoredRegion(victim.getLocation())) {
return;
}
victimUser.getCache().addDamage(attackerUser, event.getDamage());
}
});
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig pc = Settings.getConfig();
MessagesConfig m = Messages.getInstance();
Player p = (Player) sender;
User user = User.get(p);
Guild guild = user.getGuild();
if (!user.hasGuild()) {
p.sendMessage(m.validityHasNotGuild);
return;
}
if (!user.isOwner() && !user.isDeputy()) {
p.sendMessage(m.validityIsNotOwner);
return;
}
if (pc.validityWhen != 0) {
long c = guild.getValidity();
long d = c - System.currentTimeMillis();
if (d > pc.validityWhen) {
long when = d - pc.validityWhen;
p.sendMessage(m.validityWhen.replace("{TIME}", TimeUtils.getDurationBreakdown(when)));
return;
}
}
List<ItemStack> itemsList = pc.validityItems;
for (ItemStack itemStack : itemsList) {
if (!p.getInventory().containsAtLeast(itemStack, itemStack.getAmount())) {
String msg = m.validityItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(itemStack.getAmount());
sb.append(" ");
sb.append(itemStack.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : itemsList) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
p.sendMessage(msg);
return;
}
p.getInventory().removeItem(itemStack);
}
long c = guild.getValidity();
if (c == 0) {
c = System.currentTimeMillis();
}
c += pc.validityTime;
guild.setValidity(c);
p.sendMessage(m.validityDone.replace("{DATE}", pc.dateFormat.format(new Date(c))));
}
#location 15
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
Guild guild = user.getGuild();
if (!user.hasGuild()) {
player.sendMessage(messages.validityHasNotGuild);
return;
}
if (!user.isOwner() && !user.isDeputy()) {
player.sendMessage(messages.validityIsNotOwner);
return;
}
if (config.validityWhen != 0) {
long c = guild.getValidity();
long d = c - System.currentTimeMillis();
if (d > config.validityWhen) {
long when = d - config.validityWhen;
player.sendMessage(messages.validityWhen.replace("{TIME}", TimeUtils.getDurationBreakdown(when)));
return;
}
}
List<ItemStack> itemsList = config.validityItems;
for (ItemStack itemStack : itemsList) {
if (!player.getInventory().containsAtLeast(itemStack, itemStack.getAmount())) {
String msg = messages.validityItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(itemStack.getAmount());
sb.append(" ");
sb.append(itemStack.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : itemsList) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
player.sendMessage(msg);
return;
}
player.getInventory().removeItem(itemStack);
}
long c = guild.getValidity();
if (c == 0) {
c = System.currentTimeMillis();
}
c += config.validityTime;
guild.setValidity(c);
player.sendMessage(messages.validityDone.replace("{DATE}", config.dateFormat.format(new Date(c))));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig c = Settings.getConfig();
MessagesConfig m = Messages.getInstance();
Player p = (Player) sender;
User user = User.get(p);
if (!c.baseEnable) {
p.sendMessage(m.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
p.sendMessage(m.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
p.sendMessage(m.baseIsTeleportation);
return;
}
ItemStack[] items = Settings.getConfig().baseItems.toArray(new ItemStack[0]);
for (ItemStack is : items) {
if (!p.getInventory().containsAtLeast(is, is.getAmount())) {
String msg = m.baseItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(is.getAmount());
sb.append(" ");
sb.append(is.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : items) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
p.sendMessage(msg);
return;
}
}
p.getInventory().removeItem(items);
int time = Settings.getConfig().baseDelay;
if (time < 1) {
p.teleport(guild.getHome());
p.sendMessage(m.baseTeleport);
return;
}
p.sendMessage(m.baseDontMove.replace("{TIME}", Integer.toString(time)));
Location before = p.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!p.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(p.getLocation(), before)) {
user.getTeleportation().cancel();
p.sendMessage(m.baseMove);
user.setTeleportation(null);
p.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
p.sendMessage(m.baseTeleport);
p.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
}
#location 14
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!config.baseEnable) {
player.sendMessage(messages.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
player.sendMessage(messages.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
player.sendMessage(messages.baseIsTeleportation);
return;
}
ItemStack[] items = Settings.getConfig().baseItems.toArray(new ItemStack[0]);
for (ItemStack is : items) {
if (!player.getInventory().containsAtLeast(is, is.getAmount())) {
String msg = messages.baseItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(is.getAmount());
sb.append(" ");
sb.append(is.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : items) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
player.sendMessage(msg);
return;
}
}
player.getInventory().removeItem(items);
int time = Settings.getConfig().baseDelay;
if (time < 1) {
player.teleport(guild.getHome());
player.sendMessage(messages.baseTeleport);
return;
}
player.sendMessage(messages.baseDontMove.replace("{TIME}", Integer.toString(time)));
Location before = player.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!player.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(player.getLocation(), before)) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseMove);
user.setTeleportation(null);
player.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseTeleport);
player.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
if (args.length < 1) {
player.sendMessage(messages.generalNoTagGiven);
return;
}
if (!GuildUtils.tagExists(args[0])) {
player.sendMessage(messages.generalNoGuildFound);
return;
}
Region region = RegionUtils.get(GuildUtils.byTag(args[0]).getRegion());
if (region == null || region.getCenter() == null) {
player.sendMessage(messages.adminNoRegionFound);
return;
}
player.sendMessage(messages.baseTeleport);
player.teleport(region.getCenter());
}
#location 16
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
if (args.length < 1) {
player.sendMessage(messages.generalNoTagGiven);
return;
}
Guild guild = GuildUtils.byTag(args[0]);
if (guild == null) {
player.sendMessage(messages.generalNoGuildFound);
return;
}
Region region = RegionUtils.get(guild.getRegion());
if (region == null || region.getCenter() == null) {
player.sendMessage(messages.adminNoRegionFound);
return;
}
player.sendMessage(messages.baseTeleport);
player.teleport(region.getCenter());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void update(Guild guild) {
if (!this.guilds.contains(guild.getRank())) {
this.guilds.add(guild.getRank());
} else {
synchronized (guilds) {
Collections.sort(guilds);
}
for (int i = 0; i < guilds.size(); i++) {
Rank rank = guilds.get(i);
rank.setPosition(i + 1);
}
}
}
#location 11
#vulnerability type THREAD_SAFETY_VIOLATION | #fixed code
public void update(Guild guild) {
if (! this.guilds.contains(guild.getRank())) {
this.guilds.add(guild.getRank());
}
Collections.sort(guilds);
for (int i = 0; i < guilds.size(); i++) {
Rank rank = guilds.get(i);
rank.setPosition(i + 1);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
if (args.length < 1) {
player.sendMessage(messages.generalNoTagGiven);
return;
}
if (!GuildUtils.tagExists(args[0])) {
player.sendMessage(messages.generalNoGuildFound);
return;
}
PluginConfig config = Settings.getConfig();
Location location = player.getLocation();
if (config.createCenterY != 0) {
location.setY(config.createCenterY);
}
int d = config.regionSize + config.createDistance;
if (config.enlargeItems != null) {
d = config.enlargeItems.size() * config.enlargeSize + d;
}
if (d > player.getWorld().getSpawnLocation().distance(location)) {
player.sendMessage(messages.createSpawn.replace("{DISTANCE}", Integer.toString(d)));
return;
}
if (RegionUtils.isNear(location)) {
player.sendMessage(messages.createIsNear);
return;
}
Guild guild = GuildUtils.byTag(args[0]);
Region region = RegionUtils.get(guild.getRegion());
if (region == null) {
region = new Region(guild, location, config.regionSize);
} else {
if (config.createStringMaterial.equalsIgnoreCase("ender crystal")) {
EntityUtil.despawn(guild);
} else {
Block block = region.getCenter().getBlock().getRelative(BlockFace.DOWN);
if (block.getLocation().getBlockY() > 1) {
block.setType(Material.AIR);
}
}
region.setCenter(location);
}
if (config.createCenterSphere) {
List<Location> sphere = SpaceUtils.sphere(location, 3, 3, false, true, 0);
for (Location l : sphere) {
if (l.getBlock().getType() != Material.BEDROCK) {
l.getBlock().setType(Material.AIR);
}
}
}
if (config.createMaterial != null && config.createMaterial != Material.AIR) {
location.getBlock().getRelative(BlockFace.DOWN).setType(config.createMaterial);
} else if (config.createStringMaterial.equalsIgnoreCase("ender crystal")) {
EntityUtil.spawn(guild);
}
player.sendMessage(messages.adminGuildRelocated.replace("{GUILD}", guild.getName()));
}
#location 38
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
PluginConfig config = Settings.getConfig();
Player player = (Player) sender;
if (args.length < 1) {
player.sendMessage(messages.generalNoTagGiven);
return;
}
Guild guild = GuildUtils.byTag(args[0]);
if (guild == null) {
player.sendMessage(messages.generalNoGuildFound);
return;
}
Location location = player.getLocation();
if (config.createCenterY != 0) {
location.setY(config.createCenterY);
}
int d = config.regionSize + config.createDistance;
if (config.enlargeItems != null) {
d = config.enlargeItems.size() * config.enlargeSize + d;
}
if (d > player.getWorld().getSpawnLocation().distance(location)) {
player.sendMessage(messages.createSpawn.replace("{DISTANCE}", Integer.toString(d)));
return;
}
if (RegionUtils.isNear(location)) {
player.sendMessage(messages.createIsNear);
return;
}
Region region = RegionUtils.get(guild.getRegion());
if (region == null) {
region = new Region(guild, location, config.regionSize);
} else {
if (config.createStringMaterial.equalsIgnoreCase("ender crystal")) {
EntityUtil.despawn(guild);
} else {
Block block = region.getCenter().getBlock().getRelative(BlockFace.DOWN);
if (block.getLocation().getBlockY() > 1) {
block.setType(Material.AIR);
}
}
region.setCenter(location);
}
if (config.createCenterSphere) {
List<Location> sphere = SpaceUtils.sphere(location, 3, 3, false, true, 0);
for (Location l : sphere) {
if (l.getBlock().getType() != Material.BEDROCK) {
l.getBlock().setType(Material.AIR);
}
}
}
if (config.createMaterial != null && config.createMaterial != Material.AIR) {
location.getBlock().getRelative(BlockFace.DOWN).setType(config.createMaterial);
} else if (config.createStringMaterial.equalsIgnoreCase("ender crystal")) {
EntityUtil.spawn(guild);
}
player.sendMessage(messages.adminGuildRelocated.replace("{GUILD}", guild.getName()).replace("{REGION}", region.getName()));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public boolean checkPlayer(Player player, SecurityType type, Object... values) {
if (!Settings.getConfig().regionsEnabled) {
return false;
}
if (isBanned(User.get(player))) {
return true;
}
switch (type) {
case FREECAM:
Guild guild = null;
for (int i = 0; i < values.length; i++) {
if (values[i] instanceof Guild) {
guild = (Guild) values[i];
}
}
int dis = (int) RegionUtils.get(guild.getRegion()).getCenter().distance(player.getLocation());
if (dis < 6) {
return false;
}
for (Player w : Bukkit.getOnlinePlayers()) {
if (w.isOp()) {
w.sendMessage(SecurityUtils.getBustedMessage(player.getName(), "FreeCam"));
w.sendMessage(SecurityUtils.getNoteMessage("Zaatakowal krysztal z odleglosci &c" + dis + " kratek"));
}
}
blocked.add(User.get(player));
return true;
case EVERYTHING:
break;
default:
break;
}
return false;
}
#location 19
#vulnerability type NULL_DEREFERENCE | #fixed code
public boolean checkPlayer(Player player, SecurityType type, Object... values) {
if (!Settings.getConfig().regionsEnabled) {
return false;
}
if (isBanned(User.get(player))) {
return true;
}
switch (type) {
case FREECAM:
Guild guild = null;
for (Object value : values) {
if (value instanceof Guild) {
guild = (Guild) value;
}
}
if (guild == null) {
return false;
}
Region region = RegionUtils.get(guild.getRegion());
if (region == null) {
return false;
}
int dis = (int) region.getCenter().distance(player.getLocation());
if (dis < 6) {
return false;
}
for (Player w : Bukkit.getOnlinePlayers()) {
if (w.isOp()) {
w.sendMessage(SecurityUtils.getBustedMessage(player.getName(), "FreeCam"));
w.sendMessage(SecurityUtils.getNoteMessage("Zaatakowal krysztal z odleglosci &c" + dis + " kratek"));
}
}
blocked.add(User.get(player));
return true;
case EVERYTHING:
break;
default:
break;
}
return false;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void remove(Player player) {
if (has(player)) {
sendPacket(player, bars.get(player).getDestroyPacket());
bars.remove(player);
}
}
#location 3
#vulnerability type NULL_DEREFERENCE | #fixed code
public static void remove(Player player) {
if (has(player)) {
sendPacket(player, DRAGONBAR_CACHE.get(player).getDestroyPacket());
DRAGONBAR_CACHE.remove(player);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!config.baseEnable) {
player.sendMessage(messages.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
player.sendMessage(messages.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
player.sendMessage(messages.baseIsTeleportation);
return;
}
ItemStack[] items = Settings.getConfig().baseItems.toArray(new ItemStack[0]);
for (ItemStack is : items) {
if (!player.getInventory().containsAtLeast(is, is.getAmount())) {
String msg = messages.baseItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(is.getAmount());
sb.append(" ");
sb.append(is.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : items) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
player.sendMessage(msg);
return;
}
}
player.getInventory().removeItem(items);
int time = Settings.getConfig().baseDelay;
if (time < 1) {
player.teleport(guild.getHome());
player.sendMessage(messages.baseTeleport);
return;
}
player.sendMessage(messages.baseDontMove.replace("{TIME}", Integer.toString(time)));
Location before = player.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!player.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(player.getLocation(), before)) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseMove);
user.setTeleportation(null);
player.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseTeleport);
player.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
}
#location 21
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!config.baseEnable) {
player.sendMessage(messages.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
player.sendMessage(messages.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
player.sendMessage(messages.baseIsTeleportation);
return;
}
Collection<ItemStack> requiredItems = config.baseItems;
for (ItemStack requiredItem : requiredItems) {
if (player.getInventory().containsAtLeast(requiredItem, requiredItem.getAmount())) {
continue;
}
String msg = ItemUtils.translatePlaceholder(messages.baseItems, requiredItems, requiredItem);
player.sendMessage(msg);
return;
}
ItemStack[] items = ItemUtils.toArray(requiredItems);
player.getInventory().removeItem(items);
if (config.baseDelay < 1) {
player.teleport(guild.getHome());
player.sendMessage(messages.baseTeleport);
return;
}
int time = config.baseDelay;
Location before = player.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!player.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(player.getLocation(), before)) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseMove);
user.setTeleportation(null);
player.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseTeleport);
player.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
player.sendMessage(messages.baseDontMove.replace("{TIME}", Integer.toString(time)));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig m = Messages.getInstance();
Player p = (Player) sender;
User u = User.get(p);
if (!u.hasGuild()) {
p.sendMessage(m.kickHasNotGuild);
return;
}
if (!u.isOwner() && !u.isDeputy()) {
p.sendMessage(m.kickIsNotOwner);
return;
}
if (args.length < 1) {
p.sendMessage(m.kickPlayer);
return;
}
User uk = User.get(args[0]);
OfflineUser up = uk.getOfflineUser();
if (!uk.hasGuild()) {
p.sendMessage(m.kickToHasNotGuild);
return;
}
if (!u.getGuild().equals(uk.getGuild())) {
p.sendMessage(m.kickOtherGuild);
return;
}
if (uk.isOwner()) {
p.sendMessage(m.kickOwner);
return;
}
Guild guild = u.getGuild();
IndependentThread.action(ActionType.PREFIX_GLOBAL_REMOVE_PLAYER, up);
guild.removeMember(uk);
uk.removeGuild();
if (up.isOnline()) {
IndependentThread.action(ActionType.PREFIX_GLOBAL_UPDATE_PLAYER, p);
}
p.sendMessage(m.kickToOwner.replace("{PLAYER}", uk.getName()));
Player pk = uk.getPlayer();
if (pk != null) {
pk.sendMessage(m.kickToPlayer.replace("{GUILD}", guild.getName()));
}
Bukkit.broadcastMessage(m.broadcastKick.replace("{PLAYER}", uk.getName()).replace("{GUILD}", guild.getName()).replace("{TAG}", guild.getTag()));
}
#location 13
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!user.hasGuild()) {
player.sendMessage(messages.kickHasNotGuild);
return;
}
if (!user.isOwner() && !user.isDeputy()) {
player.sendMessage(messages.kickIsNotOwner);
return;
}
if (args.length < 1) {
player.sendMessage(messages.kickPlayer);
return;
}
User formerUser = User.get(args[0]);
OfflineUser formerOffline = formerUser.getOfflineUser();
if (!formerUser.hasGuild()) {
player.sendMessage(messages.kickToHasNotGuild);
return;
}
if (!user.getGuild().equals(formerUser.getGuild())) {
player.sendMessage(messages.kickOtherGuild);
return;
}
if (formerUser.isOwner()) {
player.sendMessage(messages.kickOwner);
return;
}
Guild guild = user.getGuild();
IndependentThread.action(ActionType.PREFIX_GLOBAL_REMOVE_PLAYER, formerOffline);
guild.removeMember(formerUser);
formerUser.removeGuild();
if (formerOffline.isOnline()) {
IndependentThread.action(ActionType.PREFIX_GLOBAL_UPDATE_PLAYER, player);
}
MessageTranslator translator = new MessageTranslator()
.register("{PLAYER}", formerUser.getName())
.register("{GUILD}", guild.getName())
.register("{TAG}", guild.getTag());
player.sendMessage(translator.translate(messages.kickToOwner));
Bukkit.broadcastMessage(translator.translate(messages.broadcastKick));
Player formerPlayer = formerUser.getPlayer();
if (formerPlayer != null) {
formerPlayer.sendMessage(translator.translate(messages.kickToPlayer));
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig c = Settings.getConfig();
MessagesConfig m = Messages.getInstance();
Player p = (Player) sender;
User user = User.get(p);
if (!c.baseEnable) {
p.sendMessage(m.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
p.sendMessage(m.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
p.sendMessage(m.baseIsTeleportation);
return;
}
ItemStack[] items = Settings.getConfig().baseItems.toArray(new ItemStack[0]);
for (ItemStack is : items) {
if (!p.getInventory().containsAtLeast(is, is.getAmount())) {
String msg = m.baseItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(is.getAmount());
sb.append(" ");
sb.append(is.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : items) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
p.sendMessage(msg);
return;
}
}
p.getInventory().removeItem(items);
int time = Settings.getConfig().baseDelay;
if (time < 1) {
p.teleport(guild.getHome());
p.sendMessage(m.baseTeleport);
return;
}
p.sendMessage(m.baseDontMove.replace("{TIME}", Integer.toString(time)));
Location before = p.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!p.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(p.getLocation(), before)) {
user.getTeleportation().cancel();
p.sendMessage(m.baseMove);
user.setTeleportation(null);
p.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
p.sendMessage(m.baseTeleport);
p.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
}
#location 9
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!config.baseEnable) {
player.sendMessage(messages.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
player.sendMessage(messages.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
player.sendMessage(messages.baseIsTeleportation);
return;
}
ItemStack[] items = Settings.getConfig().baseItems.toArray(new ItemStack[0]);
for (ItemStack is : items) {
if (!player.getInventory().containsAtLeast(is, is.getAmount())) {
String msg = messages.baseItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(is.getAmount());
sb.append(" ");
sb.append(is.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : items) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
player.sendMessage(msg);
return;
}
}
player.getInventory().removeItem(items);
int time = Settings.getConfig().baseDelay;
if (time < 1) {
player.teleport(guild.getHome());
player.sendMessage(messages.baseTeleport);
return;
}
player.sendMessage(messages.baseDontMove.replace("{TIME}", Integer.toString(time)));
Location before = player.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!player.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(player.getLocation(), before)) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseMove);
user.setTeleportation(null);
player.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseTeleport);
player.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static int getPing(Player player) {
int ping = 0;
if (player == null) {
return ping;
}
try {
Class<?> craftPlayer = Reflections.getCraftBukkitClass("entity.CraftPlayer");
Object cp = craftPlayer.cast(player);
Object handle = craftPlayer.getMethod("getHandle").invoke(cp);
ping = (int) handle.getClass().getField("ping").get(handle);
} catch (Exception e) {
if (FunnyGuildsLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
return ping;
}
#location 10
#vulnerability type NULL_DEREFERENCE | #fixed code
public static int getPing(Player player) {
int ping = 0;
if (player == null) {
return ping;
}
try {
Object cp = craftPlayerClass.cast(player);
Object handle = getHandleMethod.invoke(cp);
ping = (int) pingField.get(handle);
}
catch (Exception e) {
if (FunnyGuildsLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
return ping;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public boolean isInNonPointsRegion(Location location) {
if (! isInRegion(location)) {
return false;
}
for (ProtectedRegion region : getRegionSet(location)) {
if (region.getFlag(noPointsFlag) == StateFlag.State.ALLOW) {
return true;
}
}
return false;
}
#location 7
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public boolean isInNonPointsRegion(Location location) {
ApplicableRegionSet regionSet = getRegionSet(location);
if (regionSet == null) {
return false;
}
for (ProtectedRegion region : regionSet) {
if (region.getFlag(noPointsFlag) == StateFlag.State.ALLOW) {
return true;
}
}
return false;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public synchronized Scoreboard getScoreboard() {
if (this.scoreboard == null) {
this.scoreboard = Bukkit.getScoreboardManager().getNewScoreboard();
}
return this.scoreboard;
}
#location 3
#vulnerability type NULL_DEREFERENCE | #fixed code
public synchronized Scoreboard getScoreboard() {
return this.scoreboard;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static String parseRank(User source, String var) {
if (! var.contains("TOP-")) {
return null;
}
int i = getIndex(var);
if (i <= 0) {
FunnyGuilds.getInstance().getPluginLogger().error("Index in TOP- must be greater or equal to 1!");
return null;
}
PluginConfiguration config = FunnyGuilds.getInstance().getPluginConfiguration();
if (var.contains("GTOP")) {
List<Guild> rankedGuilds = new ArrayList<>();
for (int in = 1; in <= RankManager.getInstance().guilds(); in++) {
Guild guild = RankManager.getInstance().getGuild(in);
if (guild != null && guild.getMembers().size() >= config.minMembersToInclude) {
rankedGuilds.add(guild);
}
}
if (rankedGuilds.isEmpty() || i - 1 >= rankedGuilds.size()) {
return StringUtils.replace(var, "{GTOP-" + i + '}', FunnyGuilds.getInstance().getMessageConfiguration().gtopNoValue);
}
else {
Guild guild = rankedGuilds.get(i - 1);
int points = guild.getRank().getPoints();
String pointsFormat = config.gtopPoints;
if (!pointsFormat.isEmpty()) {
pointsFormat = pointsFormat.replace("{POINTS-FORMAT}", IntegerRange.inRange(points, config.pointsFormat, "POINTS"));
pointsFormat = pointsFormat.replace("{POINTS}", String.valueOf(points));
}
String guildTag = guild.getTag();
if (config.playerListUseRelationshipColors) {
guildTag = StringUtils.replace(config.prefixOther, "{TAG}", guild.getTag());
if (source != null && source.hasGuild()) {
Guild sourceGuild = source.getGuild();
if (sourceGuild.getAllies().contains(guild)) {
guildTag = StringUtils.replace(config.prefixAllies, "{TAG}", guild.getTag());
}
else if (sourceGuild.getUUID().equals(guild.getUUID())) {
guildTag = StringUtils.replace(config.prefixOur, "{TAG}", guild.getTag());
}
}
}
return StringUtils.replace(var, "{GTOP-" + i + '}', guildTag + pointsFormat);
}
}
else if (var.contains("PTOP")) {
User user = RankManager.getInstance().getUser(i);
if (user != null) {
int points = user.getRank().getPoints();
String pointsFormat = config.ptopPoints;
if (!pointsFormat.isEmpty()) {
pointsFormat = pointsFormat.replace("{POINTS-FORMAT}", IntegerRange.inRange(points, config.pointsFormat, "POINTS"));
pointsFormat = pointsFormat.replace("{POINTS}", String.valueOf(points));
}
return StringUtils.replace(var, "{PTOP-" + i + '}', (user.isOnline() ? config.ptopOnline : config.ptopOffline) + user.getName() + pointsFormat);
}
else {
return StringUtils.replace(var, "{PTOP-" + i + '}', FunnyGuilds.getInstance().getMessageConfiguration().ptopNoValue);
}
}
return null;
}
#location 27
#vulnerability type NULL_DEREFERENCE | #fixed code
public static String parseRank(User source, String var) {
if (! var.contains("TOP-")) {
return null;
}
int i = getIndex(var);
if (i <= 0) {
FunnyGuilds.getInstance().getPluginLogger().error("Index in TOP- must be greater or equal to 1!");
return null;
}
PluginConfiguration config = FunnyGuilds.getInstance().getPluginConfiguration();
if (var.contains("GTOP")) {
Guild guild;
int positionIdx = i;
do {
guild = RankManager.getInstance().getGuild(positionIdx++);
if (guild == null) {
return StringUtils.replace(var, "{GTOP-" + i + '}', FunnyGuilds.getInstance().getMessageConfiguration().gtopNoValue);
}
}
while (guild.getMembers().size() < config.minMembersToInclude);
int points = guild.getRank().getPoints();
String pointsFormat = config.gtopPoints;
if (!pointsFormat.isEmpty()) {
pointsFormat = pointsFormat.replace("{POINTS-FORMAT}", IntegerRange.inRange(points, config.pointsFormat, "POINTS"));
pointsFormat = pointsFormat.replace("{POINTS}", String.valueOf(points));
}
String guildTag = guild.getTag();
if (config.playerListUseRelationshipColors) {
guildTag = StringUtils.replace(config.prefixOther, "{TAG}", guild.getTag());
if (source != null && source.hasGuild()) {
Guild sourceGuild = source.getGuild();
if (sourceGuild.getAllies().contains(guild)) {
guildTag = StringUtils.replace(config.prefixAllies, "{TAG}", guild.getTag());
}
else if (sourceGuild.getUUID().equals(guild.getUUID())) {
guildTag = StringUtils.replace(config.prefixOur, "{TAG}", guild.getTag());
}
}
}
return StringUtils.replace(var, "{GTOP-" + i + '}', guildTag + pointsFormat);
}
else if (var.contains("PTOP")) {
User user = RankManager.getInstance().getUser(i);
if (user == null) {
return StringUtils.replace(var, "{PTOP-" + i + '}', FunnyGuilds.getInstance().getMessageConfiguration().ptopNoValue);
}
int points = user.getRank().getPoints();
String pointsFormat = config.ptopPoints;
if (!pointsFormat.isEmpty()) {
pointsFormat = pointsFormat.replace("{POINTS-FORMAT}", IntegerRange.inRange(points, config.pointsFormat, "POINTS"));
pointsFormat = pointsFormat.replace("{POINTS}", String.valueOf(points));
}
return StringUtils.replace(var, "{PTOP-" + i + '}', (user.isOnline() ? config.ptopOnline : config.ptopOffline) + user.getName() + pointsFormat);
}
return null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void patch() {
PluginConfiguration config = FunnyGuilds.getInstance().getPluginConfiguration();
for (Player player : this.getServer().getOnlinePlayers()) {
this.getServer().getScheduler().runTask(this, () -> PacketExtension.registerPlayer(player));
User user = User.get(player);
if (user.getCache().getScoreboard() == null) {
user.getCache().setScoreboard(Bukkit.getScoreboardManager().getNewScoreboard());
}
user.getCache().getDummy();
user.getRank();
if (config.playerListEnable) {
AbstractTablist.createTablist(config.playerList, config.playerListHeader, config.playerListFooter, config.playerListPing, player);
}
}
for (Guild guild : GuildUtils.getGuilds()) {
if (config.createEntityType != null) {
GuildEntityHelper.spawnGuildHeart(guild);
}
guild.updateRank();
}
}
#location 14
#vulnerability type NULL_DEREFERENCE | #fixed code
private void patch() {
for (Player player : this.getServer().getOnlinePlayers()) {
this.getServer().getScheduler().runTask(this, () -> PacketExtension.registerPlayer(player));
User user = User.get(player);
if (user.getCache().getScoreboard() == null) {
user.getCache().setScoreboard(Bukkit.getScoreboardManager().getNewScoreboard());
}
user.getCache().getDummy();
user.getRank();
if (!pluginConfiguration.playerListEnable) {
continue;
}
AbstractTablist.createTablist(pluginConfiguration.playerList, pluginConfiguration.playerListHeader, pluginConfiguration.playerListFooter, pluginConfiguration.playerListPing, player);
}
for (Guild guild : GuildUtils.getGuilds()) {
if (pluginConfiguration.createEntityType != null) {
GuildEntityHelper.spawnGuildHeart(guild);
}
guild.updateRank();
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void broadcast(String message) {
for (User user : this.getOnlineMembers()) {
user.getPlayer().sendMessage(message);
}
}
#location 3
#vulnerability type NULL_DEREFERENCE | #fixed code
public void broadcast(String message) {
for (User user : this.getOnlineMembers()) {
if (user.getPlayer() == null) {
continue;
}
user.getPlayer().sendMessage(message);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void load() {
Database db = Database.getInstance();
PluginConfig config = Settings.getConfig();
usersTable(db);
regionsTable(db);
guildsTable(db);
Database.getInstance().executeQuery("SELECT * FROM `" + config.mysql.usersTableName + "`", usersResult -> {
try {
while (usersResult.next()) {
User user = DatabaseUser.deserialize(usersResult);
if (user != null) {
user.changed();
}
}
FunnyLogger.info("Loaded users: " + UserUtils.getUsers().size());
} catch (Exception e) {
if (FunnyLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
});
if (Settings.getConfig().regionsEnabled) {
Database.getInstance().executeQuery("SELECT * FROM `" + config.mysql.regionsTableName + "`", regionsResult -> {
try {
while (regionsResult.next()) {
Region region = DatabaseRegion.deserialize(regionsResult);
if (region != null) {
region.changed();
}
}
FunnyLogger.info("Loaded regions: " + RegionUtils.getRegions().size());
} catch (Exception e) {
if (FunnyLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
});
} else {
FunnyLogger.info("Regions are disabled and thus - not loaded");
}
Database.getInstance().executeQuery("SELECT * FROM `" + config.mysql.guildsTableName + "`", guildsResult -> {
try {
while (guildsResult.next()) {
Guild guild = DatabaseGuild.deserialize(guildsResult);
if (guild != null) {
guild.changed();
}
}
FunnyLogger.info("Loaded guilds: " + GuildUtils.getGuilds().size());
} catch (Exception e) {
if (FunnyLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
});
// TODO
for (Guild guild : GuildUtils.getGuilds()) {
if (guild.getOwner() != null) {
continue;
}
GuildUtils.deleteGuild(guild);
}
ConcurrencyManager concurrencyManager = FunnyGuilds.getInstance().getConcurrencyManager();
concurrencyManager.postRequests(new PrefixGlobalUpdateRequest());
}
#location 76
#vulnerability type NULL_DEREFERENCE | #fixed code
public void load() {
Database db = Database.getInstance();
PluginConfig config = Settings.getConfig();
usersTable(db);
regionsTable(db);
guildsTable(db);
Database.getInstance().executeQuery("SELECT * FROM `" + config.mysql.usersTableName + "`", usersResult -> {
try {
while (usersResult.next()) {
User user = DatabaseUser.deserialize(usersResult);
if (user != null) {
user.changed();
}
}
FunnyLogger.info("Loaded users: " + UserUtils.getUsers().size());
} catch (Exception e) {
if (FunnyLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
});
if (Settings.getConfig().regionsEnabled) {
Database.getInstance().executeQuery("SELECT * FROM `" + config.mysql.regionsTableName + "`", regionsResult -> {
try {
while (regionsResult.next()) {
Region region = DatabaseRegion.deserialize(regionsResult);
if (region != null) {
region.changed();
}
}
FunnyLogger.info("Loaded regions: " + RegionUtils.getRegions().size());
} catch (Exception e) {
if (FunnyLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
});
} else {
FunnyLogger.info("Regions are disabled and thus - not loaded");
}
Database.getInstance().executeQuery("SELECT * FROM `" + config.mysql.guildsTableName + "`", guildsResult -> {
try {
while (guildsResult.next()) {
Guild guild = DatabaseGuild.deserialize(guildsResult);
if (guild != null) {
guild.changed();
}
}
FunnyLogger.info("Loaded guilds: " + GuildUtils.getGuilds().size());
} catch (Exception e) {
if (FunnyLogger.exception(e.getCause())) {
e.printStackTrace();
}
}
});
Database.getInstance().executeQuery("SELECT `tag`, `allies`, `enemies` FROM `" + config.mysql.guildsTableName + "`", result -> {
try {
while (result.next()) {
Guild guild = GuildUtils.getByTag(result.getString("tag"));
if (guild == null) {
continue;
}
String alliesList = result.getString("allies");
String enemiesList = result.getString("enemies");
List<Guild> allies = new ArrayList<>();
if (alliesList != null && !alliesList.equals("")) {
allies = GuildUtils.getGuilds(ChatUtils.fromString(alliesList));
}
List<Guild> enemies = new ArrayList<>();
if (enemiesList != null && !enemiesList.equals("")) {
enemies = GuildUtils.getGuilds(ChatUtils.fromString(enemiesList));
}
guild.setAllies(allies);
guild.setEnemies(enemies);
}
}
catch (Exception ex) {
if (FunnyLogger.exception(ex.getCause())) {
ex.printStackTrace();
}
}
});
// TODO
for (Guild guild : GuildUtils.getGuilds()) {
if (guild.getOwner() != null) {
continue;
}
GuildUtils.deleteGuild(guild);
}
ConcurrencyManager concurrencyManager = FunnyGuilds.getInstance().getConcurrencyManager();
concurrencyManager.postRequests(new PrefixGlobalUpdateRequest());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!config.baseEnable) {
player.sendMessage(messages.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
player.sendMessage(messages.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
player.sendMessage(messages.baseIsTeleportation);
return;
}
ItemStack[] items = Settings.getConfig().baseItems.toArray(new ItemStack[0]);
for (ItemStack is : items) {
if (!player.getInventory().containsAtLeast(is, is.getAmount())) {
String msg = messages.baseItems;
if (msg.contains("{ITEM}")) {
StringBuilder sb = new StringBuilder();
sb.append(is.getAmount());
sb.append(" ");
sb.append(is.getType().toString().toLowerCase());
msg = msg.replace("{ITEM}", sb.toString());
}
if (msg.contains("{ITEMS}")) {
ArrayList<String> list = new ArrayList<String>();
for (ItemStack it : items) {
StringBuilder sb = new StringBuilder();
sb.append(it.getAmount());
sb.append(" ");
sb.append(it.getType().toString().toLowerCase());
list.add(sb.toString());
}
msg = msg.replace("{ITEMS}", StringUtils.toString(list, true));
}
player.sendMessage(msg);
return;
}
}
player.getInventory().removeItem(items);
int time = Settings.getConfig().baseDelay;
if (time < 1) {
player.teleport(guild.getHome());
player.sendMessage(messages.baseTeleport);
return;
}
player.sendMessage(messages.baseDontMove.replace("{TIME}", Integer.toString(time)));
Location before = player.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!player.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(player.getLocation(), before)) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseMove);
user.setTeleportation(null);
player.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseTeleport);
player.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
}
#location 14
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
PluginConfig config = Settings.getConfig();
MessagesConfig messages = Messages.getInstance();
Player player = (Player) sender;
User user = User.get(player);
if (!config.baseEnable) {
player.sendMessage(messages.baseTeleportationDisabled);
return;
}
if (!user.hasGuild()) {
player.sendMessage(messages.baseHasNotGuild);
return;
}
Guild guild = user.getGuild();
if (user.getTeleportation() != null) {
player.sendMessage(messages.baseIsTeleportation);
return;
}
Collection<ItemStack> requiredItems = config.baseItems;
for (ItemStack requiredItem : requiredItems) {
if (player.getInventory().containsAtLeast(requiredItem, requiredItem.getAmount())) {
continue;
}
String msg = ItemUtils.translatePlaceholder(messages.baseItems, requiredItems, requiredItem);
player.sendMessage(msg);
return;
}
ItemStack[] items = ItemUtils.toArray(requiredItems);
player.getInventory().removeItem(items);
if (config.baseDelay < 1) {
player.teleport(guild.getHome());
player.sendMessage(messages.baseTeleport);
return;
}
int time = config.baseDelay;
Location before = player.getLocation();
AtomicInteger i = new AtomicInteger(1);
user.setTeleportation(Bukkit.getScheduler().runTaskTimer(FunnyGuilds.getInstance(), () -> {
if (!player.isOnline()) {
user.getTeleportation().cancel();
user.setTeleportation(null);
return;
}
if (!LocationUtils.equals(player.getLocation(), before)) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseMove);
user.setTeleportation(null);
player.getInventory().addItem(items);
return;
}
if (i.getAndIncrement() > time) {
user.getTeleportation().cancel();
player.sendMessage(messages.baseTeleport);
player.teleport(guild.getHome());
user.setTeleportation(null);
}
}, 0L, 20L));
player.sendMessage(messages.baseDontMove.replace("{TIME}", Integer.toString(time)));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
if (args.length < 1) {
sender.sendMessage(messages.generalNoTagGiven);
return;
}
if (!GuildUtils.tagExists(args[0])) {
sender.sendMessage(messages.generalNoGuildFound);
return;
}
if (args.length < 2) {
sender.sendMessage(messages.generalNoNickGiven);
return;
}
if (!UserUtils.playedBefore(args[1])) {
sender.sendMessage(messages.generalNotPlayedBefore);
return;
}
Guild guild = GuildUtils.byTag(args[0]);
User user = User.get(args[1]);
if (!guild.getMembers().contains(user)) {
sender.sendMessage(messages.adminUserNotMemberOf);
return;
}
if (guild.getOwner().equals(user)) {
sender.sendMessage(messages.adminAlreadyLeader);
return;
}
Player leaderPlayer = user.getPlayer();
guild.setOwner(user);
sender.sendMessage(messages.leaderSet);
if (leaderPlayer != null) {
leaderPlayer.sendMessage(messages.leaderOwner);
}
for (User member : guild.getOnlineMembers()) {
member.getPlayer().sendMessage(messages.leaderMembers.replace("{PLAYER}", user.getName()));
}
}
#location 28
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
if (args.length < 1) {
sender.sendMessage(messages.generalNoTagGiven);
return;
}
Guild guild = GuildUtils.byTag(args[0]);
if (guild == null) {
sender.sendMessage(messages.generalNoGuildFound);
return;
}
if (args.length < 2) {
sender.sendMessage(messages.generalNoNickGiven);
return;
}
if (!UserUtils.playedBefore(args[1])) {
sender.sendMessage(messages.generalNotPlayedBefore);
return;
}
User user = User.get(args[1]);
if (!guild.getMembers().contains(user)) {
sender.sendMessage(messages.adminUserNotMemberOf);
return;
}
if (guild.getOwner().equals(user)) {
sender.sendMessage(messages.adminAlreadyLeader);
return;
}
Player leaderPlayer = user.getPlayer();
guild.setOwner(user);
sender.sendMessage(messages.leaderSet);
if (leaderPlayer != null) {
leaderPlayer.sendMessage(messages.leaderOwner);
}
String message = messages.leaderMembers.replace("{PLAYER}", user.getName());
for (User member : guild.getOnlineMembers()) {
member.getPlayer().sendMessage(message);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static IndependentThread getInstance() {
if (instance == null) {
new IndependentThread().start();
}
return instance;
}
#location 5
#vulnerability type THREAD_SAFETY_VIOLATION | #fixed code
public static IndependentThread getInstance() {
if (instance == null) {
new IndependentThread().start();
}
return instance;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig m = Messages.getInstance();
User user = User.get((Player) sender);
if (user.isSpy()) {
user.setSpy(false);
sender.sendMessage(m.adminStopSpy);
} else {
user.setSpy(true);
sender.sendMessage(m.adminStartSpy);
}
}
#location 8
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void execute(CommandSender sender, String[] args) {
MessagesConfig messages = Messages.getInstance();
User user = User.get((Player) sender);
if (user.isSpy()) {
user.setSpy(false);
sender.sendMessage(messages.adminStopSpy);
} else {
user.setSpy(true);
sender.sendMessage(messages.adminStartSpy);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public boolean checkPlayer(Player player, SecurityType type, Object... values) {
if (!Settings.getConfig().regionsEnabled) {
return false;
}
if (isBanned(User.get(player))) {
return true;
}
switch (type) {
case FREECAM:
Guild guild = null;
for (int i = 0; i < values.length; i++) {
if (values[i] instanceof Guild) {
guild = (Guild) values[i];
}
}
int dis = (int) RegionUtils.get(guild.getRegion()).getCenter().distance(player.getLocation());
if (dis < 6) {
return false;
}
for (Player w : Bukkit.getOnlinePlayers()) {
if (w.isOp()) {
w.sendMessage(SecurityUtils.getBustedMessage(player.getName(), "FreeCam"));
w.sendMessage(SecurityUtils.getNoteMessage("Zaatakowal krysztal z odleglosci &c" + dis + " kratek"));
}
}
blocked.add(User.get(player));
return true;
case EVERYTHING:
break;
default:
break;
}
return false;
}
#location 19
#vulnerability type NULL_DEREFERENCE | #fixed code
public boolean checkPlayer(Player player, SecurityType type, Object... values) {
if (!Settings.getConfig().regionsEnabled) {
return false;
}
if (isBanned(User.get(player))) {
return true;
}
switch (type) {
case FREECAM:
Guild guild = null;
for (Object value : values) {
if (value instanceof Guild) {
guild = (Guild) value;
}
}
if (guild == null) {
return false;
}
Region region = RegionUtils.get(guild.getRegion());
if (region == null) {
return false;
}
int dis = (int) region.getCenter().distance(player.getLocation());
if (dis < 6) {
return false;
}
for (Player w : Bukkit.getOnlinePlayers()) {
if (w.isOp()) {
w.sendMessage(SecurityUtils.getBustedMessage(player.getName(), "FreeCam"));
w.sendMessage(SecurityUtils.getNoteMessage("Zaatakowal krysztal z odleglosci &c" + dis + " kratek"));
}
}
blocked.add(User.get(player));
return true;
case EVERYTHING:
break;
default:
break;
}
return false;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected final boolean sendStopToPostgresqlInstance() {
final boolean result = shutdownPostgres(getConfig());
if (runtimeConfig.getArtifactStore() instanceof PostgresArtifactStore) {
final IDirectory tempDir = ((PostgresArtifactStore) runtimeConfig.getArtifactStore()).getTempDir();
if (tempDir != null && tempDir.asFile() != null) {
logger.log(Level.INFO, format("Cleaning up after the embedded process (removing %s)...",
tempDir.asFile().getAbsolutePath()));
}
forceDelete(tempDir.asFile());
}
return result;
}
#location 9
#vulnerability type NULL_DEREFERENCE | #fixed code
protected final boolean sendStopToPostgresqlInstance() {
final boolean result = shutdownPostgres(getConfig());
if (runtimeConfig.getArtifactStore() instanceof PostgresArtifactStore) {
final IDirectory tempDir = ((PostgresArtifactStore) runtimeConfig.getArtifactStore()).getTempDir();
if (tempDir != null && tempDir.asFile() != null) {
logger.log(Level.INFO, format("Cleaning up after the embedded process (removing %s)...",
tempDir.asFile().getAbsolutePath()));
forceDelete(tempDir.asFile());
}
}
return result;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private double testModel() {
try {
double runningLoss = 0;
double runningWeightOfValidationSet = 0;
boolean gotNextCycle = false;
int cycle = 0;
while (dataCycler.hasMore() || gotNextCycle) {
BufferedWriter trainingWriter = new BufferedWriter(new FileWriter("training" + cycle));
trainingWriter.write("FileNo");
for (T instance : dataCycler.getValidationSet()) {
trainingWriter.write("" + ((RegressionInstance) instance).id + "\n");
}
BufferedWriter testWriter = new BufferedWriter(new FileWriter("test" + cycle));
testWriter.write("FileNo,actual,predicted\n");
testWriter = new BufferedWriter(new FileWriter("validation" + cycle));
List<T> validationSet = dataCycler.getValidationSet();
double validationSetWeight = getInstanceWeights(validationSet);
PM predictiveModel = modelBuilder.buildPredictiveModel(dataCycler.getTrainingSet());
runningLoss += ((RegressionLossChecker) lossChecker).calculateLoss(predictiveModel, validationSet, testWriter) * validationSetWeight;
runningWeightOfValidationSet += validationSetWeight;
gotNextCycle = dataCycler.nextCycle();
cycle++;
testWriter.flush();
trainingWriter.flush();
testWriter.close();
trainingWriter.close();
}
return runningLoss / runningWeightOfValidationSet;
} catch (IOException e) {
logger.error("couldn't write");
}
return 0.0;
}
#location 32
#vulnerability type RESOURCE_LEAK | #fixed code
private double testModel() {
double runningLoss = 0;
double runningWeightOfValidationSet = 0;
boolean gotNextCycle= false;
while (dataCycler.hasMore() || gotNextCycle){
List<T> validationSet = dataCycler.getValidationSet();
double validationSetWeight = getInstanceWeights(validationSet);
PM predictiveModel = modelBuilder.buildPredictiveModel(dataCycler.getTrainingSet());
runningLoss += lossChecker.calculateLoss(predictiveModel, validationSet) * validationSetWeight;
runningWeightOfValidationSet += validationSetWeight;
gotNextCycle = dataCycler.nextCycle();
}
return runningLoss / runningWeightOfValidationSet;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void simpleBmiTestSplit() throws Exception {
final List<Instance> instances = TreeBuilderTestUtils.getIntegerInstances(1000);
final TreeBuilder tb = new TreeBuilder(new SplitDiffScorer());
final RandomForestBuilder rfb = new RandomForestBuilder(tb);
final PAVCalibratedPredictiveModelBuilder cpmb = new PAVCalibratedPredictiveModelBuilder(rfb);
final UpdatablePAVCalibratedPredictiveModelBuilder ucpmb = new UpdatablePAVCalibratedPredictiveModelBuilder(cpmb, null, 1);
final long startTime = System.currentTimeMillis();
final CalibratedPredictiveModel calibratedPredictiveModel = ucpmb.buildPredictiveModel(instances);
final RandomForest randomForest = (RandomForest) calibratedPredictiveModel.predictiveModel;
TreeBuilderTestUtils.serializeDeserialize(randomForest);
final List<Tree> trees = randomForest.trees;
final int treeSize = trees.size();
final int firstTreeNodeSize = trees.get(0).node.size();
Assert.assertTrue(treeSize < 400, "Forest size should be less than 400");
Assert.assertTrue((System.currentTimeMillis() - startTime) < 20000,"Building this node should take far less than 20 seconds");
final List<Instance> newInstances = TreeBuilderTestUtils.getIntegerInstances(1000);
final CalibratedPredictiveModel newCalibratedPredictiveModel = ucpmb.buildPredictiveModel(newInstances);
final RandomForest newRandomForest = (RandomForest) newCalibratedPredictiveModel.predictiveModel;
Assert.assertTrue(calibratedPredictiveModel == newCalibratedPredictiveModel, "Expect same tree to be updated");
Assert.assertEquals(treeSize, newRandomForest.trees.size(), "Expected same number of trees");
Assert.assertNotEquals(firstTreeNodeSize, newRandomForest.trees.get(0).node.size(), "Expected new nodes");
}
#location 9
#vulnerability type NULL_DEREFERENCE | #fixed code
@Test
public void simpleBmiTestSplit() throws Exception {
final List<Instance> instances = TreeBuilderTestUtils.getIntegerInstances(1000);
final TreeBuilder tb = new TreeBuilder(new SplitDiffScorer());
final RandomForestBuilder rfb = new RandomForestBuilder(tb);
final PAVCalibratedPredictiveModelBuilder cpmb = new PAVCalibratedPredictiveModelBuilder(rfb);
final UpdatablePAVCalibratedPredictiveModelBuilder ucpmb = new UpdatablePAVCalibratedPredictiveModelBuilder(cpmb);
final long startTime = System.currentTimeMillis();
final CalibratedPredictiveModel calibratedPredictiveModel = ucpmb.buildPredictiveModel(instances);
final RandomForest randomForest = (RandomForest) calibratedPredictiveModel.predictiveModel;
TreeBuilderTestUtils.serializeDeserialize(randomForest);
final List<Tree> trees = randomForest.trees;
final int treeSize = trees.size();
final int firstTreeNodeSize = trees.get(0).node.size();
Assert.assertTrue(treeSize < 400, "Forest size should be less than 400");
Assert.assertTrue((System.currentTimeMillis() - startTime) < 20000,"Building this node should take far less than 20 seconds");
final List<Instance> newInstances = TreeBuilderTestUtils.getIntegerInstances(1000);
final CalibratedPredictiveModel newCalibratedPredictiveModel = ucpmb.buildPredictiveModel(newInstances);
final RandomForest newRandomForest = (RandomForest) newCalibratedPredictiveModel.predictiveModel;
Assert.assertTrue(calibratedPredictiveModel == newCalibratedPredictiveModel, "Expect same tree to be updated");
Assert.assertEquals(treeSize, newRandomForest.trees.size(), "Expected same number of trees");
Assert.assertNotEquals(firstTreeNodeSize, newRandomForest.trees.get(0).node.size(), "Expected new nodes");
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private double testModel() {
try {
double runningLoss = 0;
double runningWeightOfValidationSet = 0;
boolean gotNextCycle = false;
int cycle = 0;
while (dataCycler.hasMore() || gotNextCycle) {
BufferedWriter trainingWriter = new BufferedWriter(new FileWriter("training" + cycle));
trainingWriter.write("FileNo");
for (T instance : dataCycler.getValidationSet()) {
trainingWriter.write("" + ((RegressionInstance) instance).id + "\n");
}
BufferedWriter testWriter = new BufferedWriter(new FileWriter("test" + cycle));
testWriter.write("FileNo,actual,predicted\n");
testWriter = new BufferedWriter(new FileWriter("validation" + cycle));
List<T> validationSet = dataCycler.getValidationSet();
double validationSetWeight = getInstanceWeights(validationSet);
PM predictiveModel = modelBuilder.buildPredictiveModel(dataCycler.getTrainingSet());
runningLoss += ((RegressionLossChecker) lossChecker).calculateLoss(predictiveModel, validationSet, testWriter) * validationSetWeight;
runningWeightOfValidationSet += validationSetWeight;
gotNextCycle = dataCycler.nextCycle();
cycle++;
testWriter.flush();
trainingWriter.flush();
testWriter.close();
trainingWriter.close();
}
return runningLoss / runningWeightOfValidationSet;
} catch (IOException e) {
logger.error("couldn't write");
}
return 0.0;
}
#location 16
#vulnerability type RESOURCE_LEAK | #fixed code
private double testModel() {
double runningLoss = 0;
double runningWeightOfValidationSet = 0;
boolean gotNextCycle= false;
while (dataCycler.hasMore() || gotNextCycle){
List<T> validationSet = dataCycler.getValidationSet();
double validationSetWeight = getInstanceWeights(validationSet);
PM predictiveModel = modelBuilder.buildPredictiveModel(dataCycler.getTrainingSet());
runningLoss += lossChecker.calculateLoss(predictiveModel, validationSet) * validationSetWeight;
runningWeightOfValidationSet += validationSetWeight;
gotNextCycle = dataCycler.nextCycle();
}
return runningLoss / runningWeightOfValidationSet;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static String exportToHtml(Option option, String folderPath, String fileName) {
if (fileName == null || fileName.length() == 0) {
return exportToHtml(option, folderPath);
}
String optionStr = GsonUtil.format(option);
File folder = new File(folderPath);
if (folder.exists() && folder.isFile()) {
String tempPath = folder.getParent();
folder = new File(tempPath);
}
if (!folder.exists()) {
folder.mkdirs();
}
InputStream is = null;
InputStreamReader iReader = null;
BufferedReader bufferedReader = null;
FileWriter writer = null;
List<String> lines = new ArrayList<String>();
String line;
//写入文件
File html = new File(folder.getPath() + "/" + fileName);
try {
is = OptionUtil.class.getResourceAsStream("/template");
iReader = new InputStreamReader(is);
bufferedReader = new BufferedReader(iReader);
while ((line = bufferedReader.readLine()) != null) {
if (line.contains("##option##")) {
line = line.replace("##option##", optionStr);
}
lines.add(line);
}
writer = new FileWriter(html);
for (String l : lines) {
writer.write(l + "\n");
}
} catch (Exception e) {
e.printStackTrace();
} finally {
if (is != null) {
try {
is.close();
} catch (IOException e) {
//ignore
}
}
if (writer != null) {
try {
writer.close();
} catch (IOException e) {
//ignore
}
}
}
//处理
try {
return html.getAbsolutePath();
} catch (Exception e) {
return null;
}
}
#location 38
#vulnerability type RESOURCE_LEAK | #fixed code
public static String exportToHtml(Option option, String folderPath, String fileName) {
if (fileName == null || fileName.length() == 0) {
return exportToHtml(option, folderPath);
}
FileWriter writer = null;
List<String> lines = readLines(option);
//写入文件
File html = new File(getFolderPath(folderPath) + "/" + fileName);
try {
writer = new FileWriter(html);
for (String l : lines) {
writer.write(l + "\n");
}
} catch (Exception e) {
} finally {
if (writer != null) {
try {
writer.close();
} catch (IOException e) {
//ignore
}
}
}
//处理
try {
return html.getAbsolutePath();
} catch (Exception e) {
return null;
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private static List<String> readLines(Option option) {
String optionStr = GsonUtil.format(option);
InputStream is = null;
InputStreamReader iReader = null;
BufferedReader bufferedReader = null;
List<String> lines = new ArrayList<String>();
String line;
try {
is = OptionUtil.class.getResourceAsStream("/template");
iReader = new InputStreamReader(is);
bufferedReader = new BufferedReader(iReader);
while ((line = bufferedReader.readLine()) != null) {
if (line.contains("##option##")) {
line = line.replace("##option##", optionStr);
}
lines.add(line);
}
} catch (Exception e) {
} finally {
if (is != null) {
try {
is.close();
} catch (IOException e) {
//ignore
}
}
}
return lines;
}
#location 18
#vulnerability type RESOURCE_LEAK | #fixed code
private static List<String> readLines(Option option) {
String optionStr = GsonUtil.format(option);
InputStream is = null;
InputStreamReader iReader = null;
BufferedReader bufferedReader = null;
List<String> lines = new ArrayList<String>();
String line;
try {
is = OptionUtil.class.getResourceAsStream("/template");
iReader = new InputStreamReader(is, "UTF-8");
bufferedReader = new BufferedReader(iReader);
while ((line = bufferedReader.readLine()) != null) {
if (line.contains("##option##")) {
line = line.replace("##option##", optionStr);
}
lines.add(line);
}
} catch (Exception e) {
} finally {
if (is != null) {
try {
is.close();
} catch (IOException e) {
//ignore
}
}
}
return lines;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static Geometry loadGeometryFromWKTFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String s = null;
try {
FileInputStream stream = new FileInputStream(file_name);
Reader reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
stream.close();
s = builder.toString();
} catch (Exception ex) {
}
return OperatorImportFromWkt.local().execute(0, Geometry.Type.Unknown, s, null);
}
#location 16
#vulnerability type RESOURCE_LEAK | #fixed code
public static Geometry loadGeometryFromWKTFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String s = null;
Reader reader = null;
try {
FileInputStream stream = new FileInputStream(file_name);
reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
s = builder.toString();
} catch (Exception ex) {
}
finally {
if (reader != null) {
try {
reader.close();
} catch (IOException e) {
}
}
}
return OperatorImportFromWkt.local().execute(0, Geometry.Type.Unknown, s, null);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static MapGeometry loadGeometryFromJSONFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String jsonString = null;
try {
FileInputStream stream = new FileInputStream(file_name);
Reader reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
stream.close();
jsonString = builder.toString();
} catch (Exception ex) {
}
MapGeometry mapGeom = OperatorImportFromJson.local().execute(Geometry.Type.Unknown, jsonString);
return mapGeom;
}
#location 16
#vulnerability type RESOURCE_LEAK | #fixed code
public static MapGeometry loadGeometryFromJSONFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String jsonString = null;
Reader reader = null;
try {
FileInputStream stream = new FileInputStream(file_name);
reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
jsonString = builder.toString();
} catch (Exception ex) {
}
finally {
if (reader != null) {
try {
reader.close();
} catch (IOException e) {
}
}
}
MapGeometry mapGeom = OperatorImportFromJson.local().execute(Geometry.Type.Unknown, jsonString);
return mapGeom;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static Geometry loadGeometryFromWKTFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String s = null;
try {
FileInputStream stream = new FileInputStream(file_name);
Reader reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
stream.close();
s = builder.toString();
} catch (Exception ex) {
}
return OperatorImportFromWkt.local().execute(0, Geometry.Type.Unknown, s, null);
}
#location 19
#vulnerability type RESOURCE_LEAK | #fixed code
public static Geometry loadGeometryFromWKTFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String s = null;
Reader reader = null;
try {
FileInputStream stream = new FileInputStream(file_name);
reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
s = builder.toString();
} catch (Exception ex) {
}
finally {
if (reader != null) {
try {
reader.close();
} catch (IOException e) {
}
}
}
return OperatorImportFromWkt.local().execute(0, Geometry.Type.Unknown, s, null);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static MapGeometry loadGeometryFromJSONFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String jsonString = null;
try {
FileInputStream stream = new FileInputStream(file_name);
Reader reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
stream.close();
jsonString = builder.toString();
} catch (Exception ex) {
}
MapGeometry mapGeom = OperatorImportFromJson.local().execute(Geometry.Type.Unknown, jsonString);
return mapGeom;
}
#location 19
#vulnerability type RESOURCE_LEAK | #fixed code
public static MapGeometry loadGeometryFromJSONFileDbg(String file_name) {
if (file_name == null) {
throw new IllegalArgumentException();
}
String jsonString = null;
Reader reader = null;
try {
FileInputStream stream = new FileInputStream(file_name);
reader = new BufferedReader(new InputStreamReader(stream));
StringBuilder builder = new StringBuilder();
char[] buffer = new char[8192];
int read;
while ((read = reader.read(buffer, 0, buffer.length)) > 0) {
builder.append(buffer, 0, read);
}
jsonString = builder.toString();
} catch (Exception ex) {
}
finally {
if (reader != null) {
try {
reader.close();
} catch (IOException e) {
}
}
}
MapGeometry mapGeom = OperatorImportFromJson.local().execute(Geometry.Type.Unknown, jsonString);
return mapGeom;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGetSingleFileGzip() throws Exception
{
final DefaultHttpClient client = new DefaultHttpClient();
client.addResponseInterceptor(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
assertEquals(200, r.getStatusLine().getStatusCode());
assertNotNull(r.getHeaders(HttpHeaders.CONTENT_ENCODING));
assertEquals(1, r.getHeaders(HttpHeaders.CONTENT_ENCODING).length);
assertEquals("gzip", r.getHeaders(HttpHeaders.CONTENT_ENCODING)[0].getValue());
client.removeResponseInterceptorByClass(this.getClass());
}
});
Sardine sardine = new SardineImpl(client);
sardine.enableCompression();
// final String url = "http://sardine.googlecode.com/svn/trunk/README.html";
final String url = "http://sudo.ch/dav/anon/sardine/single/file";
final InputStream in = sardine.get(url);
assertNotNull(in);
assertNotNull(in.read());
try
{
in.close();
}
catch (EOFException e)
{
fail("Issue https://issues.apache.org/jira/browse/HTTPCLIENT-1075 pending");
}
}
#location 20
#vulnerability type RESOURCE_LEAK | #fixed code
@Test
public void testGetSingleFileGzip() throws Exception
{
final HttpClientBuilder client = HttpClientBuilder.create();
client.addInterceptorFirst(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
assertEquals(200, r.getStatusLine().getStatusCode());
assertNotNull(r.getHeaders(HttpHeaders.CONTENT_ENCODING));
assertEquals(1, r.getHeaders(HttpHeaders.CONTENT_ENCODING).length);
assertEquals("gzip", r.getHeaders(HttpHeaders.CONTENT_ENCODING)[0].getValue());
}
});
Sardine sardine = new SardineImpl(client);
sardine.enableCompression();
// final String url = "http://sardine.googlecode.com/svn/trunk/README.html";
final String url = "http://sudo.ch/dav/anon/sardine/single/file";
final InputStream in = sardine.get(url);
assertNotNull(in);
assertNotNull(in.read());
try
{
in.close();
}
catch (EOFException e)
{
fail("Issue https://issues.apache.org/jira/browse/HTTPCLIENT-1075 pending");
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGetRange() throws Exception
{
final DefaultHttpClient client = new DefaultHttpClient();
client.addResponseInterceptor(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
// Verify partial content response
assertEquals(206, r.getStatusLine().getStatusCode());
assertNotNull(r.getHeaders(HttpHeaders.CONTENT_RANGE));
assertEquals(1, r.getHeaders(HttpHeaders.CONTENT_RANGE).length);
client.removeResponseInterceptorByClass(this.getClass());
}
});
Sardine sardine = new SardineImpl(client);
// mod_dav supports Range headers for GET
final String url = "http://sudo.ch/dav/anon/sardine/single/file";
// Resume
final Map<String, String> header = Collections.singletonMap(HttpHeaders.RANGE, "bytes=" + 1 + "-");
final InputStream in = sardine.get(url, header);
assertNotNull(in);
}
#location 21
#vulnerability type RESOURCE_LEAK | #fixed code
@Test
public void testGetRange() throws Exception
{
final HttpClientBuilder client = HttpClientBuilder.create();
client.addInterceptorFirst(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
// Verify partial content response
assertEquals(206, r.getStatusLine().getStatusCode());
assertNotNull(r.getHeaders(HttpHeaders.CONTENT_RANGE));
assertEquals(1, r.getHeaders(HttpHeaders.CONTENT_RANGE).length);
}
});
Sardine sardine = new SardineImpl(client);
// mod_dav supports Range headers for GET
final String url = "http://sudo.ch/dav/anon/sardine/single/file";
// Resume
final Map<String, String> header = Collections.singletonMap(HttpHeaders.RANGE, "bytes=" + 1 + "-");
final InputStream in = sardine.get(url, header);
assertNotNull(in);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testBasicPreemptiveAuth() throws Exception
{
final DefaultHttpClient client = new DefaultHttpClient();
final CountDownLatch count = new CountDownLatch(1);
client.setCredentialsProvider(new BasicCredentialsProvider()
{
@Override
public Credentials getCredentials(AuthScope authscope)
{
// Set flag that credentials have been used indicating preemptive authentication
count.countDown();
return new Credentials()
{
public Principal getUserPrincipal()
{
return new BasicUserPrincipal("anonymous");
}
public String getPassword()
{
return "invalid";
}
};
}
});
SardineImpl sardine = new SardineImpl(client);
URI url = URI.create("http://sudo.ch/dav/basic/");
//Send basic authentication header in initial request
sardine.enablePreemptiveAuthentication(url.getHost());
try
{
sardine.list(url.toString());
fail("Expected authorization failure");
}
catch (SardineException e)
{
// Expect Authorization Failed
assertEquals(401, e.getStatusCode());
// Make sure credentials have been queried
assertEquals("No preemptive authentication attempt", 0, count.getCount());
}
}
#location 33
#vulnerability type RESOURCE_LEAK | #fixed code
@Test
public void testBasicPreemptiveAuth() throws Exception
{
final HttpClientBuilder client = HttpClientBuilder.create();
final CountDownLatch count = new CountDownLatch(1);
client.setDefaultCredentialsProvider(new BasicCredentialsProvider()
{
@Override
public Credentials getCredentials(AuthScope authscope)
{
// Set flag that credentials have been used indicating preemptive authentication
count.countDown();
return new Credentials()
{
public Principal getUserPrincipal()
{
return new BasicUserPrincipal("anonymous");
}
public String getPassword()
{
return "invalid";
}
};
}
});
SardineImpl sardine = new SardineImpl(client);
URI url = URI.create("http://sudo.ch/dav/basic/");
//Send basic authentication header in initial request
sardine.enablePreemptiveAuthentication(url.getHost());
try
{
sardine.list(url.toString());
fail("Expected authorization failure");
}
catch (SardineException e)
{
// Expect Authorization Failed
assertEquals(401, e.getStatusCode());
// Make sure credentials have been queried
assertEquals("No preemptive authentication attempt", 0, count.getCount());
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testPutRange() throws Exception
{
final DefaultHttpClient client = new DefaultHttpClient();
Sardine sardine = new SardineImpl(client);
// mod_dav supports Range headers for PUT
final String url = "http://sudo.ch/dav/anon/sardine/" + UUID.randomUUID().toString();
client.addResponseInterceptor(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
assertEquals(201, r.getStatusLine().getStatusCode());
client.removeResponseInterceptorByClass(this.getClass());
}
});
sardine.put(url, new ByteArrayInputStream("Te".getBytes("UTF-8")));
try
{
// Append to existing file
final Map<String, String> header = Collections.singletonMap(HttpHeaders.CONTENT_RANGE,
"bytes " + 2 + "-" + 3 + "/" + 4);
client.addRequestInterceptor(new HttpRequestInterceptor()
{
public void process(final HttpRequest r, final HttpContext context) throws HttpException, IOException
{
assertNotNull(r.getHeaders(HttpHeaders.CONTENT_RANGE));
assertEquals(1, r.getHeaders(HttpHeaders.CONTENT_RANGE).length);
client.removeRequestInterceptorByClass(this.getClass());
}
});
client.addResponseInterceptor(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
assertEquals(204, r.getStatusLine().getStatusCode());
client.removeResponseInterceptorByClass(this.getClass());
}
});
sardine.put(url, new ByteArrayInputStream("st".getBytes("UTF-8")), header);
assertEquals("Test", new BufferedReader(new InputStreamReader(sardine.get(url), "UTF-8")).readLine());
}
finally
{
sardine.delete(url);
}
}
#location 47
#vulnerability type RESOURCE_LEAK | #fixed code
@Test
public void testPutRange() throws Exception
{
final HttpClientBuilder client = HttpClientBuilder.create();
client.addInterceptorFirst(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
assertEquals(201, r.getStatusLine().getStatusCode());
}
});
Sardine sardine = new SardineImpl(client);
// mod_dav supports Range headers for PUT
final String url = "http://sudo.ch/dav/anon/sardine/" + UUID.randomUUID().toString();
sardine.put(url, new ByteArrayInputStream("Te".getBytes("UTF-8")));
try
{
// Append to existing file
final Map<String, String> header = Collections.singletonMap(HttpHeaders.CONTENT_RANGE,
"bytes " + 2 + "-" + 3 + "/" + 4);
client.addInterceptorFirst(new HttpRequestInterceptor()
{
public void process(final HttpRequest r, final HttpContext context) throws HttpException, IOException
{
assertNotNull(r.getHeaders(HttpHeaders.CONTENT_RANGE));
assertEquals(1, r.getHeaders(HttpHeaders.CONTENT_RANGE).length);
}
});
client.addInterceptorFirst(new HttpResponseInterceptor()
{
public void process(final HttpResponse r, final HttpContext context) throws HttpException, IOException
{
assertEquals(204, r.getStatusLine().getStatusCode());
}
});
sardine.put(url, new ByteArrayInputStream("st".getBytes("UTF-8")), header);
assertEquals("Test", new BufferedReader(new InputStreamReader(sardine.get(url), "UTF-8")).readLine());
}
finally
{
sardine.delete(url);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testBasicPreemptiveAuthHeader() throws Exception
{
final DefaultHttpClient client = new DefaultHttpClient();
client.addRequestInterceptor(new HttpRequestInterceptor()
{
public void process(final HttpRequest r, final HttpContext context) throws HttpException, IOException
{
assertNotNull(r.getHeaders(HttpHeaders.AUTHORIZATION));
assertEquals(1, r.getHeaders(HttpHeaders.AUTHORIZATION).length);
client.removeRequestInterceptorByClass(this.getClass());
}
});
Sardine sardine = new SardineImpl(client);
sardine.setCredentials("anonymous", null);
// mod_dav supports Range headers for PUT
final URI url = URI.create("http://sardine.googlecode.com/svn/trunk/README.html");
sardine.enablePreemptiveAuthentication(url.getHost());
assertTrue(sardine.exists(url.toString()));
}
#location 19
#vulnerability type RESOURCE_LEAK | #fixed code
@Test
public void testBasicPreemptiveAuthHeader() throws Exception
{
final HttpClientBuilder client = HttpClientBuilder.create();
client.addInterceptorFirst(new HttpRequestInterceptor()
{
public void process(final HttpRequest r, final HttpContext context) throws HttpException, IOException
{
assertNotNull(r.getHeaders(HttpHeaders.AUTHORIZATION));
assertEquals(1, r.getHeaders(HttpHeaders.AUTHORIZATION).length);
}
});
Sardine sardine = new SardineImpl(client);
sardine.setCredentials("anonymous", null);
// mod_dav supports Range headers for PUT
final URI url = URI.create("http://sardine.googlecode.com/svn/trunk/README.html");
sardine.enablePreemptiveAuthentication(url.getHost());
assertTrue(sardine.exists(url.toString()));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void TestEmptyDefaultsConfig(){
String expectedConfigDirectory = ".";
ServerPaths serverPaths = mock(ServerPaths.class);
when(serverPaths.getConfigDir()).thenReturn(expectedConfigDirectory);
SlackNotificationMainSettings whms = new SlackNotificationMainSettings(server, serverPaths);
whms.register();
whms.readFrom(getEmptyDefaultsConfigElement());
String proxy = whms.getProxyForUrl("http://something.somecompany.com");
SlackNotificationProxyConfig whpc = whms.getProxyConfigForUrl("http://something.somecompany.com");
assertTrue(proxy.equals(this.proxyHost));
assertTrue(whpc.getProxyHost().equals(this.proxyHost ));
assertTrue(whpc.getProxyPort().equals(this.proxyPort));
assertTrue(whms.getDefaultChannel().equals(this.defaultChannel));
assertTrue(whms.getTeamName().equals(this.teamName));
assertTrue(whms.getToken().equals(this.token));
assertTrue(whms.getIconUrl().equals(this.iconUrl));
assertTrue(whms.getBotName().equals(this.botName));
assertNull(whms.getShowBuildAgent());
assertNull(whms.getShowElapsedBuildTime());
assertTrue(whms.getShowCommits());
assertEquals(5, whms.getMaxCommitsToDisplay());
}
#location 13
#vulnerability type NULL_DEREFERENCE | #fixed code
@Test
public void TestEmptyDefaultsConfig(){
String expectedConfigDirectory = ".";
ServerPaths serverPaths = mock(ServerPaths.class);
when(serverPaths.getConfigDir()).thenReturn(expectedConfigDirectory);
SlackNotificationMainSettings whms = new SlackNotificationMainSettings(server, serverPaths);
whms.register();
whms.readFrom(getEmptyDefaultsConfigElement());
String proxy = whms.getProxy();
SlackNotificationProxyConfig whpc = whms.getProxyConfig();
assertTrue(proxy.equals(this.proxyHost));
assertTrue(whpc.getProxyHost().equals(this.proxyHost ));
assertTrue(whpc.getProxyPort().equals(this.proxyPort));
assertTrue(whms.getDefaultChannel().equals(this.defaultChannel));
assertTrue(whms.getTeamName().equals(this.teamName));
assertTrue(whms.getToken().equals(this.token));
assertTrue(whms.getIconUrl().equals(this.iconUrl));
assertTrue(whms.getBotName().equals(this.botName));
assertNull(whms.getShowBuildAgent());
assertNull(whms.getShowElapsedBuildTime());
assertTrue(whms.getShowCommits());
assertEquals(5, whms.getMaxCommitsToDisplay());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public SlackNotification createMockNotification(String teamName, String defaultChannel, String botName,
String token, String iconUrl, Integer maxCommitsToDisplay,
Boolean showElapsedBuildTime, Boolean showBuildAgent, Boolean showCommits,
Boolean showCommitters) {
SlackNotification notification = new SlackNotificationImpl(defaultChannel);
notification.setTeamName(teamName);
notification.setBotName(botName);
notification.setToken(token);
notification.setIconUrl(iconUrl);
notification.setMaxCommitsToDisplay(maxCommitsToDisplay);
notification.setShowElapsedBuildTime(showElapsedBuildTime);
notification.setShowBuildAgent(showBuildAgent);
notification.setShowCommits(showCommits);
notification.setShowCommitters(showCommitters);
notification.setPayload(payloadManager.buildFinished(null, null));
return notification;
}
#location 16
#vulnerability type NULL_DEREFERENCE | #fixed code
public SlackNotification createMockNotification(String teamName, String defaultChannel, String botName,
String token, String iconUrl, Integer maxCommitsToDisplay,
Boolean showElapsedBuildTime, Boolean showBuildAgent, Boolean showCommits,
Boolean showCommitters) {
SlackNotification notification = new SlackNotificationImpl(defaultChannel);
notification.setTeamName(teamName);
notification.setBotName(botName);
notification.setToken(token);
notification.setIconUrl(iconUrl);
notification.setMaxCommitsToDisplay(maxCommitsToDisplay);
notification.setShowElapsedBuildTime(showElapsedBuildTime);
notification.setShowBuildAgent(showBuildAgent);
notification.setShowCommits(showCommits);
notification.setShowCommitters(showCommitters);
SlackNotificationPayloadContent payload = new SlackNotificationPayloadContent();
payload.setAgentName("Build Agent 1");
payload.setBranchDisplayName("master");
payload.setBranchIsDefault(true);
payload.setBuildDescriptionWithLinkSyntax(String.format("<http://buildserver/builds/|Failed - My Awesome Build #5>"));
payload.setBuildFullName("The Awesome Build");
payload.setBuildId("b123");
payload.setBuildName("My Awesome Build");
payload.setBuildResult("Failed");
payload.setBuildStatusUrl("http://buildserver/builds");
payload.setBuildTypeId("b123");
payload.setColor("danger");
List<Commit> commits = new ArrayList<Commit>();
commits.add(new Commit("a5bdc78", "Bug fix for that awful thing", "jbloggs", "jbloggs"));
commits.add(new Commit("cc4500d", "New feature that rocks", "bbrave", "bbrave"));
commits.add(new Commit("abb23b4", "Merge of branch xyz", "ddruff", "ddruff"));
payload.setCommits(commits);
payload.setElapsedTime(13452);
payload.setFirstFailedBuild(true);
payload.setIsComplete(true);
payload.setText("My Awesome build");
notification.setPayload(payload);
return notification;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void doPost(SlackNotification notification){
try {
if (notification.isEnabled()){
notification.post();
if (notification.getResponse() != null && !notification.getResponse().getOk()) {
Loggers.SERVER.error(this.getClass().getSimpleName() + " :: SlackNotification failed : "
+ notification.getChannel()
+ " returned error " + notification.getResponse().getError()
+ " " + notification.getErrorReason());
}
else {
Loggers.SERVER.info(this.getClass().getSimpleName() + " :: SlackNotification delivered : "
+ notification.getChannel()
+ " returned " + notification.getStatus()
+ " " + notification.getErrorReason());
}
Loggers.SERVER.debug(this.getClass().getSimpleName() + ":doPost :: content dump: " + notification.getPayload());
if (notification.isErrored()){
Loggers.SERVER.error(notification.getErrorReason());
}
if ((notification.getStatus() == null || notification.getStatus() > HttpStatus.SC_OK))
Loggers.ACTIVITIES.warn("SlackNotificationListener :: " + notification.getParam("projectId") + " SlackNotification (url: " + notification.getChannel() + " proxy: " + notification.getProxyHost() + ":" + notification.getProxyPort()+") returned HTTP status " + notification.getStatus().toString());
} else {
Loggers.SERVER.debug("SlackNotification NOT triggered: "
+ notification.getParam("buildStatus") + " " + notification.getChannel());
}
} catch (FileNotFoundException e) {
Loggers.SERVER.warn(this.getClass().getName() + ":doPost :: "
+ "A FileNotFoundException occurred while attempting to execute SlackNotification (" + notification.getChannel() + "). See the following stacktrace");
Loggers.SERVER.warn(e);
} catch (IOException e) {
Loggers.SERVER.warn(this.getClass().getName() + ":doPost :: "
+ "An IOException occurred while attempting to execute SlackNotification (" + notification.getChannel() + "). See the following stacktrace");
Loggers.SERVER.warn(e);
}
}
#location 22
#vulnerability type NULL_DEREFERENCE | #fixed code
public void doPost(SlackNotification notification){
try {
if (notification.isEnabled() && (
notification.getFilterBranchName().equalsIgnoreCase(notification.getBranchDisplayName()) ||
notification.getFilterBranchName().equalsIgnoreCase("<default>") && notification.getPayload() != null && notification.getPayload().getBranchIsDefault()
)) {
notification.post();
if (notification.getResponse() != null && !notification.getResponse().getOk()) {
Loggers.SERVER.error(this.getClass().getSimpleName() + " :: SlackNotification failed : "
+ notification.getChannel()
+ " returned error " + notification.getResponse().getError()
+ " " + notification.getErrorReason());
}
else {
Loggers.SERVER.info(this.getClass().getSimpleName() + " :: SlackNotification delivered : "
+ notification.getChannel()
+ " returned " + notification.getStatus()
+ " " + notification.getErrorReason());
}
Loggers.SERVER.debug(this.getClass().getSimpleName() + ":doPost :: content dump: " + notification.getPayload());
if (notification.isErrored()){
Loggers.SERVER.error(notification.getErrorReason());
}
if ((notification.getStatus() == null || notification.getStatus() > HttpStatus.SC_OK))
Loggers.ACTIVITIES.warn("SlackNotificationListener :: " + notification.getParam("projectId") + " SlackNotification (url: " + notification.getChannel() + " proxy: " + notification.getProxyHost() + ":" + notification.getProxyPort()+") returned HTTP status " + notification.getStatus());
} else {
Loggers.SERVER.info("SlackNotification NOT triggered: "
+ notification.getParam("buildStatus") + " " + notification.getChannel() + " isEnabled: " + notification.isEnabled() + " filterBranchName: " + notification.getFilterBranchName() + " branchDisplayName: " + notification.getBranchDisplayName());
}
} catch (FileNotFoundException e) {
Loggers.SERVER.warn(this.getClass().getName() + ":doPost :: "
+ "A FileNotFoundException occurred while attempting to execute SlackNotification (" + notification.getChannel() + "). See the following stacktrace");
Loggers.SERVER.warn(e);
} catch (IOException e) {
Loggers.SERVER.warn(this.getClass().getName() + ":doPost :: "
+ "An IOException occurred while attempting to execute SlackNotification (" + notification.getChannel() + "). See the following stacktrace");
Loggers.SERVER.warn(e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void TestFullConfig(){
String expectedConfigDirectory = ".";
ServerPaths serverPaths = mock(ServerPaths.class);
when(serverPaths.getConfigDir()).thenReturn(expectedConfigDirectory);
SlackNotificationMainSettings whms = new SlackNotificationMainSettings(server, serverPaths);
whms.register();
whms.readFrom(getFullConfigElement());
String proxy = whms.getProxyForUrl("http://something.somecompany.com");
SlackNotificationProxyConfig whpc = whms.getProxyConfigForUrl("http://something.somecompany.com");
assertTrue(proxy.equals(this.proxyHost));
assertTrue(whpc.getProxyHost().equals(this.proxyHost ));
assertTrue(whpc.getProxyPort().equals(this.proxyPort));
assertTrue(whms.getDefaultChannel().equals(this.defaultChannel));
assertTrue(whms.getTeamName().equals(this.teamName));
assertTrue(whms.getToken().equals(this.token));
assertTrue(whms.getIconUrl().equals(this.iconUrl));
assertTrue(whms.getBotName().equals(this.botName));
assertTrue(whms.getShowBuildAgent());
assertTrue(whms.getShowElapsedBuildTime());
assertFalse(whms.getShowCommits());
assertEquals(15, whms.getMaxCommitsToDisplay());
Credentials credentials = whpc.getCreds();
assertEquals("some-username", credentials.getUserPrincipal().getName());
assertEquals("some-password", credentials.getPassword());
}
#location 13
#vulnerability type NULL_DEREFERENCE | #fixed code
@Test
public void TestFullConfig(){
String expectedConfigDirectory = ".";
ServerPaths serverPaths = mock(ServerPaths.class);
when(serverPaths.getConfigDir()).thenReturn(expectedConfigDirectory);
SlackNotificationMainSettings whms = new SlackNotificationMainSettings(server, serverPaths);
whms.register();
whms.readFrom(getFullConfigElement());
String proxy = whms.getProxy();
SlackNotificationProxyConfig whpc = whms.getProxyConfig();
assertTrue(proxy.equals(this.proxyHost));
assertTrue(whpc.getProxyHost().equals(this.proxyHost ));
assertTrue(whpc.getProxyPort().equals(this.proxyPort));
assertTrue(whms.getDefaultChannel().equals(this.defaultChannel));
assertTrue(whms.getTeamName().equals(this.teamName));
assertTrue(whms.getToken().equals(this.token));
assertTrue(whms.getIconUrl().equals(this.iconUrl));
assertTrue(whms.getBotName().equals(this.botName));
assertTrue(whms.getShowBuildAgent());
assertTrue(whms.getShowElapsedBuildTime());
assertFalse(whms.getShowCommits());
assertEquals(15, whms.getMaxCommitsToDisplay());
Credentials credentials = whpc.getCreds();
assertEquals("some-username", credentials.getUserPrincipal().getName());
assertEquals("some-password", credentials.getPassword());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
RleWeightedInput[] prepareRleWeights(List<Map<String, Object>> data, long degreeCutoff, Double skipValue) {
RleWeightedInput[] inputs = new RleWeightedInput[data.size()];
int idx = 0;
for (Map<String, Object> row : data) {
List<Number> weightList = extractValues(row.get("weights"));
int size = weightList.size();
if (size > degreeCutoff) {
double[] weights = Weights.buildRleWeights(weightList, REPEAT_CUTOFF);
inputs[idx++] = skipValue == null ? new RleWeightedInput((Long) row.get("item"), weights, size) : new RleWeightedInput((Long) row.get("item"), weights, size, skipValue);
}
}
if (idx != inputs.length) inputs = Arrays.copyOf(inputs, idx);
Arrays.sort(inputs);
return inputs;
}
#location 11
#vulnerability type NULL_DEREFERENCE | #fixed code
Long getDegreeCutoff(ProcedureConfiguration configuration) {
return configuration.get("degreeCutoff", 0L);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void onRunEnd() {
try {
final long duration = (System.currentTimeMillis() - this.startTime) / 1000;
final StringTemplateGroup group = new StringTemplateGroup("mutation_test");
final StringTemplate st = group
.getInstanceOf("templates/mutation/mutation_index");
final BufferedWriter bw = new BufferedWriter(new FileWriter(
this.reportDir.getAbsolutePath() + File.separatorChar + "index.html"));
st.setAttribute("summaryList", this.summaryData);
st.setAttribute("errors", this.errors);
st.setAttribute("numberOfMutations",
this.mutatorScores.getTotalMutations());
st.setAttribute("numberOfDetectedMutations",
this.mutatorScores.getTotalDetectedMutations());
st.setAttribute("duration", duration);
st.setAttribute("mutatorScores", this.mutatorScores);
bw.write(st.toString());
bw.close();
} catch (final IOException e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
#location 21
#vulnerability type RESOURCE_LEAK | #fixed code
public void onRunEnd() {
try {
final long duration = (System.currentTimeMillis() - this.startTime) / 1000;
final StringTemplateGroup group = new StringTemplateGroup("mutation_test");
final StringTemplate st = group
.getInstanceOf("templates/mutation/mutation_index");
final Writer writer = this.outputStrategy
.createWriterForFile("index.html");
st.setAttribute("summaryList", this.summaryData);
st.setAttribute("errors", this.errors);
st.setAttribute("numberOfMutations",
this.mutatorScores.getTotalMutations());
st.setAttribute("numberOfDetectedMutations",
this.mutatorScores.getTotalDetectedMutations());
st.setAttribute("duration", duration);
st.setAttribute("mutatorScores", this.mutatorScores);
writer.write(st.toString());
writer.close();
} catch (final IOException e) {
e.printStackTrace();
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void run() {
ServerSocket socket = null;
try {
socket = new ServerSocket(this.port);
final Socket clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
final DataInputStream is = new DataInputStream(bif);
Description d = null;
final CoverageStatistics cs = new CoverageStatistics();
byte control = is.readByte();
while (control != CoveragePipe.DONE) {
switch (control) {
case CoveragePipe.CLAZZ:
final int id = is.readInt();
final String name = is.readUTF();
final int newId = cs.registerClass(name);
if (id != newId) {
throw new PitError("Coverage id out of sync");
}
break;
case CoveragePipe.LINE:
final int classId = is.readInt();
final int lineId = is.readInt();
cs.visitLine(classId, lineId);
break;
case CoveragePipe.OUTCOME:
final boolean isGreen = is.readBoolean();
final long executionTime = is.readLong();
final CoverageResult cr = new CoverageResult(d, executionTime,
isGreen, cs.getClassStatistics());
this.handler.apply(cr);
cs.clearCoverageStats();
break;
case CoveragePipe.TEST_CHANGE:
final int index = is.readInt();
d = this.tus.get(index).getDescription();
break;
case CoveragePipe.DONE:
}
control = is.readByte();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
if (socket != null) {
try {
socket.close();
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
}
}
#location 25
#vulnerability type RESOURCE_LEAK | #fixed code
@Override
public void run() {
ServerSocket socket = null;
Socket clientSocket = null;
try {
socket = new ServerSocket(this.port);
clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
sendTests(clientSocket);
final DataInputStream is = new DataInputStream(bif);
receiveCoverage(is);
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
try {
if (clientSocket != null) {
clientSocket.close();
}
if (socket != null) {
socket.close();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void run() {
ServerSocket socket = null;
try {
socket = new ServerSocket(this.port);
final Socket clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
final DataInputStream is = new DataInputStream(bif);
Description d = null;
final CoverageStatistics cs = new CoverageStatistics();
byte control = is.readByte();
while (control != CoveragePipe.DONE) {
switch (control) {
case CoveragePipe.CLAZZ:
final int id = is.readInt();
final String name = is.readUTF();
final int newId = cs.registerClass(name);
if (id != newId) {
throw new PitError("Coverage id out of sync");
}
break;
case CoveragePipe.LINE:
final int classId = is.readInt();
final int lineId = is.readInt();
cs.visitLine(classId, lineId);
break;
case CoveragePipe.OUTCOME:
final boolean isGreen = is.readBoolean();
final long executionTime = is.readLong();
final CoverageResult cr = new CoverageResult(d, executionTime,
isGreen, cs.getClassStatistics());
this.handler.apply(cr);
cs.clearCoverageStats();
break;
case CoveragePipe.TEST_CHANGE:
final int index = is.readInt();
d = this.tus.get(index).getDescription();
break;
case CoveragePipe.DONE:
}
control = is.readByte();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
if (socket != null) {
try {
socket.close();
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
}
}
#location 63
#vulnerability type RESOURCE_LEAK | #fixed code
@Override
public void run() {
ServerSocket socket = null;
Socket clientSocket = null;
try {
socket = new ServerSocket(this.port);
clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
sendTests(clientSocket);
final DataInputStream is = new DataInputStream(bif);
receiveCoverage(is);
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
try {
if (clientSocket != null) {
clientSocket.close();
}
if (socket != null) {
socket.close();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private String findPathToJarFileFromClasspath() {
final String[] classPath = System.getProperty("java.class.path").split(
File.pathSeparator);
for (final String root : classPath) {
if (JAR_REGEX.matcher(root).matches()) {
return root;
}
}
return null;
}
#location 2
#vulnerability type NULL_DEREFERENCE | #fixed code
private String findPathToJarFileFromClasspath() {
final String[] classPath = getClassPath().split(File.pathSeparator);
for (final String root : classPath) {
if (JAR_REGEX.matcher(root).matches()) {
return root;
}
}
return null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void processMetaData(final MutationMetaData value) {
try {
this.mutatorScores.registerResults(value.getMutations());
final String css = FileUtil.readToString(IsolationUtils
.getContextClassLoader().getResourceAsStream(
"templates/mutation/style.css"));
final int lineCoverage = calculateLineCoverage(value);
final MutationTestSummaryData summaryData = new MutationTestSummaryData(
value.getMutatedClass(), value.getTestClasses(),
value.getPercentageMutationCoverage(), lineCoverage);
collectSummaryData(summaryData);
final String fileName = summaryData.getFileName();
final BufferedWriter bf = new BufferedWriter(new FileWriter(
this.reportDir.getAbsolutePath() + File.separatorChar + fileName));
final StringTemplateGroup group = new StringTemplateGroup("mutation_test");
final StringTemplate st = group
.getInstanceOf("templates/mutation/mutation_report");
st.setAttribute("css", css);
st.setAttribute("summary", summaryData);
st.setAttribute("tests", value.getTargettedTests());
st.setAttribute("mutators", value.getConfig().getMutatorNames());
final Collection<SourceFile> sourceFiles = createAnnotatedSoureFiles(value);
st.setAttribute("sourceFiles", sourceFiles);
st.setAttribute("mutatedClasses", value.getMutatedClass());
// st.setAttribute("groups", groups);
bf.write(st.toString());
bf.close();
} catch (final IOException ex) {
ex.printStackTrace();
}
}
#location 41
#vulnerability type RESOURCE_LEAK | #fixed code
private void processMetaData(final MutationMetaData value) {
try {
this.mutatorScores.registerResults(value.getMutations());
final String css = FileUtil.readToString(IsolationUtils
.getContextClassLoader().getResourceAsStream(
"templates/mutation/style.css"));
final int lineCoverage = calculateLineCoverage(value);
final MutationTestSummaryData summaryData = new MutationTestSummaryData(
value.getMutatedClass(), value.getTestClasses(),
value.getPercentageMutationCoverage(), lineCoverage);
collectSummaryData(summaryData);
final String fileName = summaryData.getFileName();
final Writer writer = this.outputStrategy.createWriterForFile(fileName);
final StringTemplateGroup group = new StringTemplateGroup("mutation_test");
final StringTemplate st = group
.getInstanceOf("templates/mutation/mutation_report");
st.setAttribute("css", css);
st.setAttribute("summary", summaryData);
st.setAttribute("tests", value.getTargettedTests());
st.setAttribute("mutators", value.getConfig().getMutatorNames());
final Collection<SourceFile> sourceFiles = createAnnotatedSoureFiles(value);
st.setAttribute("sourceFiles", sourceFiles);
st.setAttribute("mutatedClasses", value.getMutatedClass());
// st.setAttribute("groups", groups);
writer.write(st.toString());
writer.close();
} catch (final IOException ex) {
ex.printStackTrace();
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void run() {
ServerSocket socket = null;
try {
socket = new ServerSocket(this.port);
final Socket clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
final DataInputStream is = new DataInputStream(bif);
Description d = null;
final CoverageStatistics cs = new CoverageStatistics();
byte control = is.readByte();
while (control != CoveragePipe.DONE) {
switch (control) {
case CoveragePipe.CLAZZ:
final int id = is.readInt();
final String name = is.readUTF();
final int newId = cs.registerClass(name);
if (id != newId) {
throw new PitError("Coverage id out of sync");
}
break;
case CoveragePipe.LINE:
final int classId = is.readInt();
final int lineId = is.readInt();
cs.visitLine(classId, lineId);
break;
case CoveragePipe.OUTCOME:
final boolean isGreen = is.readBoolean();
final long executionTime = is.readLong();
final CoverageResult cr = new CoverageResult(d, executionTime,
isGreen, cs.getClassStatistics());
this.handler.apply(cr);
cs.clearCoverageStats();
break;
case CoveragePipe.TEST_CHANGE:
final int index = is.readInt();
d = this.tus.get(index).getDescription();
break;
case CoveragePipe.DONE:
}
control = is.readByte();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
if (socket != null) {
try {
socket.close();
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
}
}
#location 60
#vulnerability type RESOURCE_LEAK | #fixed code
@Override
public void run() {
ServerSocket socket = null;
Socket clientSocket = null;
try {
socket = new ServerSocket(this.port);
clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
sendTests(clientSocket);
final DataInputStream is = new DataInputStream(bif);
receiveCoverage(is);
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
try {
if (clientSocket != null) {
clientSocket.close();
}
if (socket != null) {
socket.close();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void run(final Class<?> clazz, final Class<?> test,
final MethodMutatorFactory... mutators) {
final ReportOptions data = new ReportOptions();
final Set<Predicate<String>> tests = Collections.singleton(Prelude
.isEqualTo(test.getName()));
data.setTargetTests(tests);
data.setDependencyAnalysisMaxDistance(-1);
final Set<Predicate<String>> mutees = Collections.singleton(Prelude
.isEqualTo(clazz.getName()));
data.setTargetClasses(mutees);
data.setTimeoutConstant(PercentAndConstantTimeoutStrategy.DEFAULT_CONSTANT);
data.setTimeoutFactor(PercentAndConstantTimeoutStrategy.DEFAULT_FACTOR);
final ArrayList<Predicate<String>> inScope = new ArrayList<Predicate<String>>();
inScope.addAll(mutees);
inScope.addAll(tests);
data.setClassesInScope(inScope);
final CoverageDatabase coverageDatabase = new DefaultCoverageDatabase(
this.config, new ClassPath(), new JavaAgentJarFinder(), data);
coverageDatabase.initialise();
final Collection<ClassGrouping> codeClasses = coverageDatabase
.getGroupedClasses();
final MutationEngine engine = DefaultMutationConfigFactory.createEngine(
false, False.<String> instance(), Collections.<String> emptyList(),
mutators);
final MutationConfig mutationConfig = new MutationConfig(engine,
Collections.<String> emptyList());
final MutationTestBuilder builder = new MutationTestBuilder(mutationConfig,
UnfilteredMutationFilter.factory(), this.config, data,
new JavaAgentJarFinder());
final List<TestUnit> tus = builder.createMutationTestUnits(codeClasses,
this.config, coverageDatabase);
this.pit.run(this.container, tus);
}
#location 42
#vulnerability type NULL_DEREFERENCE | #fixed code
private void run(final Class<?> clazz, final Class<?> test,
final MethodMutatorFactory... mutators) {
final ReportOptions data = new ReportOptions();
final Set<Predicate<String>> tests = Collections.singleton(Prelude
.isEqualTo(test.getName()));
data.setTargetTests(tests);
data.setDependencyAnalysisMaxDistance(-1);
final Set<Predicate<String>> mutees = Collections.singleton(Prelude
.isEqualTo(clazz.getName()));
data.setTargetClasses(mutees);
data.setTimeoutConstant(PercentAndConstantTimeoutStrategy.DEFAULT_CONSTANT);
data.setTimeoutFactor(PercentAndConstantTimeoutStrategy.DEFAULT_FACTOR);
final ArrayList<Predicate<String>> inScope = new ArrayList<Predicate<String>>();
inScope.addAll(mutees);
inScope.addAll(tests);
data.setClassesInScope(inScope);
final JavaAgent agent = new JarCreatingJarFinder();
try {
createEngineAndRun(data, agent, mutators);
} finally {
agent.close();
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void runTestInSeperateProcessForMutationRange(
final MutationStatusMap mutations, final Collection<ClassName> tests)
throws IOException {
Collection<MutationDetails> remainingMutations = mutations
.getUnrunMutations();
final MutationTestProcess worker = createWorker(tests, remainingMutations);
worker.start();
setFirstMutationToStatusOfStartedInCaseSlaveFailsAtBoot(mutations,
remainingMutations);
final ExitCode exitCode = waitForSlaveToDie(worker);
worker.results(mutations);
correctResultForProcessExitCode(mutations, exitCode);
}
#location 16
#vulnerability type NULL_DEREFERENCE | #fixed code
private void runTestInSeperateProcessForMutationRange(
final MutationStatusMap mutations, final Collection<ClassName> tests)
throws IOException, InterruptedException {
Collection<MutationDetails> remainingMutations = mutations
.getUnrunMutations();
final MutationTestProcess worker = createWorker(tests, remainingMutations);
worker.start();
setFirstMutationToStatusOfStartedInCaseSlaveFailsAtBoot(mutations,
remainingMutations);
final ExitCode exitCode = waitForSlaveToDie(worker);
worker.results(mutations);
correctResultForProcessExitCode(mutations, exitCode);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void main(final String[] args) {
ExitCode exitCode = ExitCode.OK;
Socket s = null;
CoveragePipe invokeQueue = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final SlaveArguments paramsFromParent = dis.read(SlaveArguments.class);
Log.setVerbose(paramsFromParent.isVerbose());
final DataOutputStream dos = new DataOutputStream(
new BufferedOutputStream(s.getOutputStream()));
invokeQueue = new CoveragePipe(dos);
CodeCoverageStore.init(invokeQueue);
HotSwapAgent.addTransformer(new CoverageTransformer(paramsFromParent
.getFilter()));
final List<TestUnit> tus = getTestsFromParent(dis);
LOG.info(tus.size() + " tests received");
final CoverageWorker worker = new CoverageWorker(invokeQueue, tus);
worker.run();
} catch (final Throwable ex) {
LOG.log(Level.SEVERE, "Error calculating coverage. Process will exit.",
ex);
ex.printStackTrace();
exitCode = ExitCode.UNKNOWN_ERROR;
} finally {
if (invokeQueue != null) {
invokeQueue.end();
}
try {
if (s != null) {
s.close();
}
} catch (final IOException e) {
throw translateCheckedException(e);
}
}
System.exit(exitCode.getCode());
}
#location 44
#vulnerability type RESOURCE_LEAK | #fixed code
public static void main(final String[] args) {
ExitCode exitCode = ExitCode.OK;
Socket s = null;
CoveragePipe invokeQueue = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final SlaveArguments paramsFromParent = dis.read(SlaveArguments.class);
Log.setVerbose(paramsFromParent.isVerbose());
final DataOutputStream dos = new DataOutputStream(
new BufferedOutputStream(s.getOutputStream()));
invokeQueue = new CoveragePipe(dos);
CodeCoverageStore.init(invokeQueue);
HotSwapAgent.addTransformer(new CoverageTransformer(paramsFromParent
.getFilter()));
final List<TestUnit> tus = getTestsFromParent(dis, paramsFromParent);
LOG.info(tus.size() + " tests received");
final CoverageWorker worker = new CoverageWorker(invokeQueue, tus);
worker.run();
} catch (final Throwable ex) {
LOG.log(Level.SEVERE, "Error calculating coverage. Process will exit.",
ex);
ex.printStackTrace();
exitCode = ExitCode.UNKNOWN_ERROR;
} finally {
if (invokeQueue != null) {
invokeQueue.end();
}
try {
if (s != null) {
s.close();
}
} catch (final IOException e) {
throw translateCheckedException(e);
}
}
System.exit(exitCode.getCode());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void testDetectsMixOfKilledSurvivingAndUncoveredMutants()
throws Exception {
executeTarget("mutationCoverage");
FileInputStream fis = new FileInputStream(findOutput());
String actual = FileUtil.readToString(fis);
assertXpathExists("//mutation[@status='KILLED']", actual);
assertXpathExists("//mutation[@status='NO_COVERAGE']", actual);
assertXpathExists("//mutation[@status='SURVIVED']", actual);
}
#location 5
#vulnerability type RESOURCE_LEAK | #fixed code
public void testDetectsMixOfKilledSurvivingAndUncoveredMutants()
throws Exception {
// executeTarget("mutationCoverage");
// FileInputStream fis = new FileInputStream(findOutput());
// String actual = FileUtil.readToString(fis);
// assertXpathExists("//mutation[@status='KILLED']", actual);
// assertXpathExists("//mutation[@status='NO_COVERAGE']", actual);
// assertXpathExists("//mutation[@status='SURVIVED']", actual);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void main(final String[] args) {
ExitCode exitCode = ExitCode.OK;
Socket s = null;
try {
final File input = new File(args[0]);
LOG.fine("Input file is " + input);
final BufferedReader br = new BufferedReader(new InputStreamReader(
new FileInputStream(input)));
final SlaveArguments paramsFromParent = (SlaveArguments) IsolationUtils
.fromTransportString(br.readLine());
System.setProperties(paramsFromParent.getSystemProperties());
Log.setVerbose(paramsFromParent.isVerbose());
br.close();
HotSwapAgent.addTransformer(new CoverageTransformer(paramsFromParent
.getFilter()));
s = new Socket("localhost", paramsFromParent.getPort());
final List<TestUnit> tus = getTestsFromParent(s);
LOG.info(tus.size() + " tests received");
final CoverageWorker worker = new CoverageWorker(s.getOutputStream(), tus);
worker.run();
} catch (final Throwable ex) {
LOG.log(Level.SEVERE, "Error calculating coverage. Process will exit.",
ex);
ex.printStackTrace();
exitCode = ExitCode.UNKNOWN_ERROR;
} finally {
try {
if (s != null) {
s.close();
}
} catch (final IOException e) {
throw translateCheckedException(e);
}
}
System.exit(exitCode.getCode());
}
#location 35
#vulnerability type RESOURCE_LEAK | #fixed code
public static void main(final String[] args) {
ExitCode exitCode = ExitCode.OK;
Socket s = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final SlaveArguments paramsFromParent = dis.read(SlaveArguments.class);
System.setProperties(paramsFromParent.getSystemProperties());
Log.setVerbose(paramsFromParent.isVerbose());
HotSwapAgent.addTransformer(new CoverageTransformer(paramsFromParent
.getFilter()));
final List<TestUnit> tus = getTestsFromParent(dis);
LOG.info(tus.size() + " tests received");
final CoverageWorker worker = new CoverageWorker(s.getOutputStream(), tus);
worker.run();
} catch (final Throwable ex) {
LOG.log(Level.SEVERE, "Error calculating coverage. Process will exit.",
ex);
ex.printStackTrace();
exitCode = ExitCode.UNKNOWN_ERROR;
} finally {
try {
if (s != null) {
s.close();
}
} catch (final IOException e) {
throw translateCheckedException(e);
}
}
System.exit(exitCode.getCode());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void main(final String[] args) {
ExitCode exitCode = ExitCode.OK;
Socket s = null;
CoveragePipe invokeQueue = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final CoverageOptions paramsFromParent = dis.read(CoverageOptions.class);
Log.setVerbose(paramsFromParent.isVerbose());
final DataOutputStream dos = new DataOutputStream(
new BufferedOutputStream(s.getOutputStream()));
invokeQueue = new CoveragePipe(dos);
CodeCoverageStore.init(invokeQueue);
HotSwapAgent.addTransformer(new CoverageTransformer(
convertToJVMClassFilter(paramsFromParent.getFilter())));
final List<TestUnit> tus = getTestsFromParent(dis, paramsFromParent);
LOG.info(tus.size() + " tests received");
final CoverageWorker worker = new CoverageWorker(invokeQueue, tus);
worker.run();
} catch (final Throwable ex) {
LOG.log(Level.SEVERE, "Error calculating coverage. Process will exit.",
ex);
ex.printStackTrace();
exitCode = ExitCode.UNKNOWN_ERROR;
} finally {
if (invokeQueue != null) {
invokeQueue.end();
}
try {
if (s != null) {
s.close();
}
} catch (final IOException e) {
throw translateCheckedException(e);
}
}
System.exit(exitCode.getCode());
}
#location 44
#vulnerability type RESOURCE_LEAK | #fixed code
public static void main(final String[] args) {
ExitCode exitCode = ExitCode.OK;
Socket s = null;
CoveragePipe invokeQueue = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final CoverageOptions paramsFromParent = dis.read(CoverageOptions.class);
Log.setVerbose(paramsFromParent.isVerbose());
if (paramsFromParent.getPitConfig().verifyEnvironment().hasSome()) {
throw paramsFromParent.getPitConfig().verifyEnvironment().value();
}
final DataOutputStream dos = new DataOutputStream(
new BufferedOutputStream(s.getOutputStream()));
invokeQueue = new CoveragePipe(dos);
CodeCoverageStore.init(invokeQueue);
HotSwapAgent.addTransformer(new CoverageTransformer(
convertToJVMClassFilter(paramsFromParent.getFilter())));
final List<TestUnit> tus = getTestsFromParent(dis, paramsFromParent);
LOG.info(tus.size() + " tests received");
final CoverageWorker worker = new CoverageWorker(invokeQueue, tus);
worker.run();
} catch (final Throwable ex) {
LOG.log(Level.SEVERE, "Error calculating coverage. Process will exit.",
ex);
ex.printStackTrace();
exitCode = ExitCode.UNKNOWN_ERROR;
} finally {
if (invokeQueue != null) {
invokeQueue.end();
}
try {
if (s != null) {
s.close();
}
} catch (final IOException e) {
throw translateCheckedException(e);
}
}
System.exit(exitCode.getCode());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void runTestInSeperateProcessForMutationRange(
final MutationStatusMap mutations, final Collection<ClassName> tests)
throws IOException {
Collection<MutationDetails> remainingMutations = mutations
.getUnrunMutations();
final MutationTestProcess worker = createWorker(tests, remainingMutations);
worker.start();
setFirstMutationToStatusOfStartedInCaseSlaveFailsAtBoot(mutations,
remainingMutations);
final ExitCode exitCode = waitForSlaveToDie(worker);
worker.results(mutations);
correctResultForProcessExitCode(mutations, exitCode);
}
#location 14
#vulnerability type RESOURCE_LEAK | #fixed code
private void runTestInSeperateProcessForMutationRange(
final MutationStatusMap mutations, final Collection<ClassName> tests)
throws IOException, InterruptedException {
Collection<MutationDetails> remainingMutations = mutations
.getUnrunMutations();
final MutationTestProcess worker = createWorker(tests, remainingMutations);
worker.start();
setFirstMutationToStatusOfStartedInCaseSlaveFailsAtBoot(mutations,
remainingMutations);
final ExitCode exitCode = waitForSlaveToDie(worker);
worker.results(mutations);
correctResultForProcessExitCode(mutations, exitCode);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static byte[] classAsBytes(final String className)
throws ClassNotFoundException {
try {
final URL resource = ClassUtils.class.getClassLoader().getResource(
convertClassNameToFileName(className));
final BufferedInputStream stream = new BufferedInputStream(
resource.openStream());
final byte[] result = new byte[resource.openConnection()
.getContentLength()];
int i;
int counter = 0;
while ((i = stream.read()) != -1) {
result[counter] = (byte) i;
counter++;
}
return result;
} catch (final IOException e) {
throw new ClassNotFoundException("", e);
}
}
#location 18
#vulnerability type RESOURCE_LEAK | #fixed code
public static byte[] classAsBytes(final String className)
throws ClassNotFoundException {
try {
final URL resource = ClassUtils.class.getClassLoader().getResource(
convertClassNameToFileName(className));
final BufferedInputStream stream = new BufferedInputStream(
resource.openStream());
final byte[] result = new byte[resource.openConnection()
.getContentLength()];
int i;
int counter = 0;
while ((i = stream.read()) != -1) {
result[counter] = (byte) i;
counter++;
}
stream.close();
return result;
} catch (final IOException e) {
throw new ClassNotFoundException("", e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void run() {
ServerSocket socket = null;
try {
socket = new ServerSocket(this.port);
final Socket clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
final DataInputStream is = new DataInputStream(bif);
Description d = null;
final CoverageStatistics cs = new CoverageStatistics();
byte control = is.readByte();
while (control != CoveragePipe.DONE) {
switch (control) {
case CoveragePipe.CLAZZ:
final int id = is.readInt();
final String name = is.readUTF();
final int newId = cs.registerClass(name);
if (id != newId) {
throw new PitError("Coverage id out of sync");
}
break;
case CoveragePipe.LINE:
final int classId = is.readInt();
final int lineId = is.readInt();
cs.visitLine(classId, lineId);
break;
case CoveragePipe.OUTCOME:
final boolean isGreen = is.readBoolean();
final long executionTime = is.readLong();
final CoverageResult cr = new CoverageResult(d, executionTime,
isGreen, cs.getClassStatistics());
this.handler.apply(cr);
cs.clearCoverageStats();
break;
case CoveragePipe.TEST_CHANGE:
final int index = is.readInt();
d = this.tus.get(index).getDescription();
break;
case CoveragePipe.DONE:
}
control = is.readByte();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
if (socket != null) {
try {
socket.close();
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
}
}
#location 65
#vulnerability type RESOURCE_LEAK | #fixed code
@Override
public void run() {
ServerSocket socket = null;
Socket clientSocket = null;
try {
socket = new ServerSocket(this.port);
clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
sendTests(clientSocket);
final DataInputStream is = new DataInputStream(bif);
receiveCoverage(is);
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
try {
if (clientSocket != null) {
clientSocket.close();
}
if (socket != null) {
socket.close();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private String getGeneratedManifestAttribute(final String key)
throws IOException, FileNotFoundException {
final Option<String> actual = this.testee.getJarLocation();
final File f = new File(actual.value());
final JarInputStream jis = new JarInputStream(new FileInputStream(f));
final Manifest m = jis.getManifest();
final Attributes a = m.getMainAttributes();
final String am = a.getValue(key);
return am;
}
#location 6
#vulnerability type RESOURCE_LEAK | #fixed code
private String getGeneratedManifestAttribute(final String key)
throws IOException, FileNotFoundException {
final Option<String> actual = this.testee.getJarLocation();
final File f = new File(actual.value());
final JarInputStream jis = new JarInputStream(new FileInputStream(f));
final Manifest m = jis.getManifest();
final Attributes a = m.getMainAttributes();
final String am = a.getValue(key);
jis.close();
return am;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void shouldPrintScoresFourToALine() {
final ByteArrayOutputStream s = new ByteArrayOutputStream();
final PrintStream out = new PrintStream(s);
this.testee.report(out);
final String actual = new String(s.toByteArray());
final String[] ss = actual.split(StringUtil.newLine());
assertEquals("> foo", ss[0]);
assertEquals("> KILLED 0 SURVIVED 0 TIMED_OUT 0 NON_VIABLE 0 ", ss[1]);
}
#location 5
#vulnerability type RESOURCE_LEAK | #fixed code
@Test
public void shouldPrintScoresFourToALine() {
final String[] ss = generateReportLines();
assertEquals("> KILLED 0 SURVIVED 0 TIMED_OUT 0 NON_VIABLE 0 ", ss[2]);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void main(final String[] args) {
addMemoryWatchDog();
Writer w = null;
try {
final File input = new File(args[0]);
LOG.fine("Input file is " + input);
final BufferedReader br = new BufferedReader(new InputStreamReader(
new FileInputStream(input)));
final SlaveArguments paramsFromParent = (SlaveArguments) IsolationUtils
.fromTransportString(br.readLine());
Log.setVerbose(paramsFromParent.isVerbose());
final File outputFile = new File(paramsFromParent.outputFileName);
w = new OutputStreamWriter(new FileOutputStream(outputFile));
LOG.fine("Output file is " + outputFile);
System.setProperties(paramsFromParent.systemProperties);
br.close();
final F2<Class<?>, byte[], Boolean> hotswap = new F2<Class<?>, byte[], Boolean>() {
public Boolean apply(final Class<?> a, final byte[] b) {
return HotSwapAgent.hotSwap(a, b);
}
};
final Reporter r = new DefaultReporter(w);
final MutationTestWorker worker = new MutationTestWorker(hotswap,
paramsFromParent.config.createMutator(IsolationUtils
.getContextClassLoader()), IsolationUtils.getContextClassLoader());
worker.run(paramsFromParent.mutations, r, new TimeOutDecoratedTestSource(
paramsFromParent.timeoutStrategy, paramsFromParent.tests));
} catch (final Exception ex) {
LOG.log(Level.WARNING, "Error during mutation test", ex);
safelyCloseWriter(w);
System.exit(ExitCode.UNKNOWN_ERROR.getCode());
} finally {
safelyCloseWriter(w);
}
}
#location 44
#vulnerability type RESOURCE_LEAK | #fixed code
public static void main(final String[] args) {
addMemoryWatchDog();
Writer w = null;
Socket s = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final SlaveArguments paramsFromParent = dis.read(SlaveArguments.class);
Log.setVerbose(paramsFromParent.isVerbose());
final File outputFile = new File(paramsFromParent.outputFileName);
w = new OutputStreamWriter(new FileOutputStream(outputFile));
LOG.fine("Output file is " + outputFile);
System.setProperties(paramsFromParent.systemProperties);
dis.close();
final F2<Class<?>, byte[], Boolean> hotswap = new F2<Class<?>, byte[], Boolean>() {
public Boolean apply(final Class<?> a, final byte[] b) {
return HotSwapAgent.hotSwap(a, b);
}
};
final Reporter r = new DefaultReporter(w);
final MutationTestWorker worker = new MutationTestWorker(hotswap,
paramsFromParent.config.createMutator(IsolationUtils
.getContextClassLoader()), IsolationUtils.getContextClassLoader());
worker.run(paramsFromParent.mutations, r, new TimeOutDecoratedTestSource(
paramsFromParent.timeoutStrategy, paramsFromParent.tests));
} catch (final Exception ex) {
LOG.log(Level.WARNING, "Error during mutation test", ex);
safelyCloseSocket(s);
safelyCloseWriter(w);
System.exit(ExitCode.UNKNOWN_ERROR.getCode());
} finally {
safelyCloseWriter(w);
safelyCloseSocket(s);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void main(final String[] args) {
enablePowerMockSupport();
Socket s = null;
Reporter r = null;
try {
final int port = Integer.valueOf(args[0]);
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
final SlaveArguments paramsFromParent = dis.read(SlaveArguments.class);
Log.setVerbose(paramsFromParent.isVerbose());
final F3<String, ClassLoader,byte[], Boolean> hotswap = new F3<String, ClassLoader, byte[], Boolean>() {
public Boolean apply(final String clazzName, ClassLoader loader, final byte[] b) {
Class<?> clazz;
try {
clazz = Class.forName(clazzName, false,
loader);
return HotSwapAgent.hotSwap(clazz, b);
} catch (ClassNotFoundException e) {
throw Unchecked.translateCheckedException(e);
}
}
};
r = new DefaultReporter(s.getOutputStream());
addMemoryWatchDog(r);
final ClassLoader loader = IsolationUtils.getContextClassLoader();
final MutationTestWorker worker = new MutationTestWorker(hotswap,
paramsFromParent.config.createMutator(new ClassloaderByteArraySource(
loader)), loader);
final List<TestUnit> tests = findTestsForTestClasses(loader,
paramsFromParent.testClasses, paramsFromParent.pitConfig);
worker.run(paramsFromParent.mutations, r, new TimeOutDecoratedTestSource(
paramsFromParent.timeoutStrategy, tests, r));
} catch (final Exception ex) {
LOG.log(Level.WARNING, "Error during mutation test", ex);
if (r != null) {
r.done(ExitCode.UNKNOWN_ERROR);
}
safelyCloseSocket(s);
} finally {
if (r != null) {
r.done(ExitCode.OK);
}
safelyCloseSocket(s);
}
}
#location 29
#vulnerability type RESOURCE_LEAK | #fixed code
public static void main(final String[] args) {
enablePowerMockSupport();
final int port = Integer.valueOf(args[0]);
Socket s = null;
try {
s = new Socket("localhost", port);
final SafeDataInputStream dis = new SafeDataInputStream(
s.getInputStream());
Reporter reporter = new DefaultReporter(s.getOutputStream());
addMemoryWatchDog(reporter);
final MutationTestSlave instance = new MutationTestSlave(dis, reporter);
instance.run();
} catch (final UnknownHostException ex) {
LOG.log(Level.WARNING, "Error during mutation test", ex);
} catch (final IOException ex) {
LOG.log(Level.WARNING, "Error during mutation test", ex);
} finally {
if ( s != null ) {
safelyCloseSocket(s);
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void run() {
ServerSocket socket = null;
try {
socket = new ServerSocket(this.port);
final Socket clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
final DataInputStream is = new DataInputStream(bif);
Description d = null;
final CoverageStatistics cs = new CoverageStatistics();
byte control = is.readByte();
while (control != CoveragePipe.DONE) {
switch (control) {
case CoveragePipe.CLAZZ:
final int id = is.readInt();
final String name = is.readUTF();
final int newId = cs.registerClass(name);
if (id != newId) {
throw new PitError("Coverage id out of sync");
}
break;
case CoveragePipe.LINE:
final int classId = is.readInt();
final int lineId = is.readInt();
cs.visitLine(classId, lineId);
break;
case CoveragePipe.OUTCOME:
final boolean isGreen = is.readBoolean();
final long executionTime = is.readLong();
final CoverageResult cr = new CoverageResult(d, executionTime,
isGreen, cs.getClassStatistics());
this.handler.apply(cr);
cs.clearCoverageStats();
break;
case CoveragePipe.TEST_CHANGE:
final int index = is.readInt();
d = this.tus.get(index).getDescription();
break;
case CoveragePipe.DONE:
}
control = is.readByte();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
if (socket != null) {
try {
socket.close();
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
}
}
#location 9
#vulnerability type RESOURCE_LEAK | #fixed code
@Override
public void run() {
ServerSocket socket = null;
Socket clientSocket = null;
try {
socket = new ServerSocket(this.port);
clientSocket = socket.accept();
final BufferedInputStream bif = new BufferedInputStream(
clientSocket.getInputStream());
sendTests(clientSocket);
final DataInputStream is = new DataInputStream(bif);
receiveCoverage(is);
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
} finally {
try {
if (clientSocket != null) {
clientSocket.close();
}
if (socket != null) {
socket.close();
}
} catch (final IOException e) {
throw Unchecked.translateCheckedException(e);
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void capitalizeTest()
{
assertEquals(capitalize("hola mundo abc"), "Hola mundo abc");
assertEquals(capitalize("HOLA mundO AbC"), "Hola mundo abc");
assertEquals(capitalize("Hola Mundo abC"), "Hola mundo abc");
assertEquals(capitalize(""), "");
assertEquals(capitalize("* Hola Mundo aBC"), "* hola mundo abc");
assertEquals(capitalize("iyi akşamlar", new Locale("tr")), "İyi akşamlar");
try
{
capitalize(null);
fail("handles null?");
} catch (NullPointerException ex)
{
}
}
#location 15
#vulnerability type NULL_DEREFERENCE | #fixed code
@Test
public void capitalizeTest()
{
assertEquals(capitalize("hola mundo abc"), "Hola mundo abc");
assertEquals(capitalize("HOLA mundO AbC"), "Hola mundo abc");
assertEquals(capitalize("Hola Mundo abC"), "Hola mundo abc");
assertEquals(capitalize(" Hola Mundo abC "), "Hola mundo abc");
assertEquals(capitalize(" (hola Mundo abC) "), "(Hola mundo abc)");
assertEquals(capitalize("[HOLA Mundo abC]"), "[Hola mundo abc]");
assertEquals(capitalize("-HOLA Mundo abC-"), "-Hola mundo abc-");
assertEquals(capitalize(" ~.-(HOLA Mundo abC)-.~"), "~.-(Hola mundo abc)-.~");
assertEquals(capitalize(""), "");
assertEquals(capitalize("* Hola Mundo aBC"), "* Hola mundo abc");
assertEquals(capitalize("2020"), "2020");
assertEquals(capitalize("iyi akşamlar", new Locale("tr")), "İyi akşamlar");
try
{
capitalize(null);
fail("handles null?");
} catch (NullPointerException ex)
{
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void addProductImage(ProductImage productImage, ImageContentFile contentImage)
throws ServiceException {
try {
/** copy to input stream **/
ByteArrayOutputStream baos = new ByteArrayOutputStream();
// Fake code simulating the copy
// You can generally do better with nio if you need...
// And please, unlike me, do something about the Exceptions :D
byte[] buffer = new byte[1024];
int len;
while ((len = contentImage.getFile().read(buffer)) > -1) {
baos.write(buffer, 0, len);
}
baos.flush();
// Open new InputStreams using the recorded bytes
// Can be repeated as many times as you wish
InputStream is1 = new ByteArrayInputStream(baos.toByteArray());
InputStream is2 = new ByteArrayInputStream(baos.toByteArray());
BufferedImage bufferedImage = ImageIO.read(is2);
if (bufferedImage == null) {
LOGGER.error("Cannot read image format for " + productImage.getProductImage());
throw new Exception("Cannot read image format " + productImage.getProductImage());
}
// contentImage.setBufferedImage(bufferedImage);
contentImage.setFile(is1);
// upload original -- L
contentImage.setFileContentType(FileContentType.PRODUCTLG);
uploadImage.addProductImage(productImage, contentImage);
/*
* //default large InputContentImage largeContentImage = new
* InputContentImage(ImageContentType.PRODUCT);
* largeContentImage.setFile(contentImage.getFile());
* largeContentImage.setDefaultImage(productImage.isDefaultImage());
* largeContentImage.setImageName(new
* StringBuilder().append("L-").append(productImage.getProductImage()).toString());
*
*
* uploadImage.uploadProductImage(configuration, productImage, largeContentImage);
*/
/*
* //default small InputContentImage smallContentImage = new
* InputContentImage(ImageContentType.PRODUCT);
* smallContentImage.setFile(contentImage.getFile());
* smallContentImage.setDefaultImage(productImage.isDefaultImage());
* smallContentImage.setImageName(new
* StringBuilder().append("S-").append(productImage.getProductImage()).toString());
*
* uploadImage.uploadProductImage(configuration, productImage, smallContentImage);
*/
// get template properties file
String slargeImageHeight = configuration.getProperty(PRODUCT_IMAGE_HEIGHT_SIZE);
String slargeImageWidth = configuration.getProperty(PRODUCT_IMAGE_WIDTH_SIZE);
// String ssmallImageHeight = configuration.getProperty("SMALL_IMAGE_HEIGHT_SIZE");
// String ssmallImageWidth = configuration.getProperty("SMALL_IMAGE_WIDTH_SIZE");
//Resizes
if (!StringUtils.isBlank(slargeImageHeight) && !StringUtils.isBlank(slargeImageWidth)) { // &&
// !StringUtils.isBlank(ssmallImageHeight)
// &&
// !StringUtils.isBlank(ssmallImageWidth))
// {
FileNameMap fileNameMap = URLConnection.getFileNameMap();
String contentType = fileNameMap.getContentTypeFor(contentImage.getFileName());
String extension = null;
if (contentType != null) {
extension = contentType.substring(contentType.indexOf("/") + 1, contentType.length());
}
if (extension == null) {
extension = "jpeg";
}
int largeImageHeight = Integer.parseInt(slargeImageHeight);
int largeImageWidth = Integer.parseInt(slargeImageWidth);
if (largeImageHeight <= 0 || largeImageWidth <= 0) {
String sizeMsg =
"Image configuration set to an invalid value [PRODUCT_IMAGE_HEIGHT_SIZE] "
+ largeImageHeight + " , [PRODUCT_IMAGE_WIDTH_SIZE] " + largeImageWidth;
LOGGER.error(sizeMsg);
throw new ServiceException(sizeMsg);
}
if (!StringUtils.isBlank(configuration.getProperty(CROP_UPLOADED_IMAGES))
&& configuration.getProperty(CROP_UPLOADED_IMAGES).equals(Constants.TRUE)) {
// crop image
ProductImageCropUtils utils =
new ProductImageCropUtils(bufferedImage, largeImageWidth, largeImageHeight);
if (utils.isCropeable()) {
bufferedImage = utils.getCroppedImage();
}
}
// do not keep a large image for now, just take care of the regular image and a small image
// resize large
// ByteArrayOutputStream output = new ByteArrayOutputStream();
BufferedImage largeResizedImage =
ProductImageSizeUtils.resizeWithRatio(bufferedImage, largeImageWidth, largeImageHeight);
File tempLarge =
File.createTempFile(new StringBuilder().append(productImage.getProduct().getId())
.append("tmpLarge").toString(), "." + extension);
ImageIO.write(largeResizedImage, extension, tempLarge);
FileInputStream isLarge = new FileInputStream(tempLarge);
// IOUtils.copy(isLarge, output);
ImageContentFile largeContentImage = new ImageContentFile();
largeContentImage.setFileContentType(FileContentType.PRODUCT);
largeContentImage.setFileName(productImage.getProductImage());
largeContentImage.setFile(isLarge);
// largeContentImage.setBufferedImage(bufferedImage);
// largeContentImage.setFile(output);
// largeContentImage.setDefaultImage(false);
// largeContentImage.setImageName(new
// StringBuilder().append("L-").append(productImage.getProductImage()).toString());
uploadImage.addProductImage(productImage, largeContentImage);
// output.flush();
// output.close();
tempLarge.delete();
// now upload original
/*
* //resize small BufferedImage smallResizedImage = ProductImageSizeUtils.resize(cropped,
* smallImageWidth, smallImageHeight); File tempSmall = File.createTempFile(new
* StringBuilder().append(productImage.getProduct().getId()).append("tmpSmall").toString(),
* "." + extension ); ImageIO.write(smallResizedImage, extension, tempSmall);
*
* //byte[] is = IOUtils.toByteArray(new FileInputStream(tempSmall));
*
* FileInputStream isSmall = new FileInputStream(tempSmall);
*
* output = new ByteArrayOutputStream(); IOUtils.copy(isSmall, output);
*
*
* smallContentImage = new InputContentImage(ImageContentType.PRODUCT);
* smallContentImage.setFile(output); smallContentImage.setDefaultImage(false);
* smallContentImage.setImageName(new
* StringBuilder().append("S-").append(productImage.getProductImage()).toString());
*
* uploadImage.uploadProductImage(configuration, productImage, smallContentImage);
*
* output.flush(); output.close();
*
* tempSmall.delete();
*/
} else {
// small will be the same as the original
contentImage.setFileContentType(FileContentType.PRODUCT);
uploadImage.addProductImage(productImage, contentImage);
}
} catch (Exception e) {
throw new ServiceException(e);
} finally {
try {
productImage.getImage().close();
} catch (Exception ignore) {
}
}
}
#location 147
#vulnerability type RESOURCE_LEAK | #fixed code
public void addProductImage(ProductImage productImage, ImageContentFile contentImage)
throws ServiceException {
try {
/** copy to input stream **/
ByteArrayOutputStream baos = new ByteArrayOutputStream();
// Fake code simulating the copy
// You can generally do better with nio if you need...
// And please, unlike me, do something about the Exceptions :D
byte[] buffer = new byte[1024];
int len;
while ((len = contentImage.getFile().read(buffer)) > -1) {
baos.write(buffer, 0, len);
}
baos.flush();
// Open new InputStreams using the recorded bytes
// Can be repeated as many times as you wish
InputStream is1 = new ByteArrayInputStream(baos.toByteArray());
InputStream is2 = new ByteArrayInputStream(baos.toByteArray());
BufferedImage bufferedImage = ImageIO.read(is2);
if (bufferedImage == null) {
LOGGER.error("Cannot read image format for " + productImage.getProductImage());
throw new Exception("Cannot read image format " + productImage.getProductImage());
}
// contentImage.setBufferedImage(bufferedImage);
contentImage.setFile(is1);
// upload original -- L
contentImage.setFileContentType(FileContentType.PRODUCTLG);
uploadImage.addProductImage(productImage, contentImage);
/*
* //default large InputContentImage largeContentImage = new
* InputContentImage(ImageContentType.PRODUCT);
* largeContentImage.setFile(contentImage.getFile());
* largeContentImage.setDefaultImage(productImage.isDefaultImage());
* largeContentImage.setImageName(new
* StringBuilder().append("L-").append(productImage.getProductImage()).toString());
*
*
* uploadImage.uploadProductImage(configuration, productImage, largeContentImage);
*/
/*
* //default small InputContentImage smallContentImage = new
* InputContentImage(ImageContentType.PRODUCT);
* smallContentImage.setFile(contentImage.getFile());
* smallContentImage.setDefaultImage(productImage.isDefaultImage());
* smallContentImage.setImageName(new
* StringBuilder().append("S-").append(productImage.getProductImage()).toString());
*
* uploadImage.uploadProductImage(configuration, productImage, smallContentImage);
*/
// get template properties file
String slargeImageHeight = configuration.getProperty(PRODUCT_IMAGE_HEIGHT_SIZE);
String slargeImageWidth = configuration.getProperty(PRODUCT_IMAGE_WIDTH_SIZE);
// String ssmallImageHeight = configuration.getProperty("SMALL_IMAGE_HEIGHT_SIZE");
// String ssmallImageWidth = configuration.getProperty("SMALL_IMAGE_WIDTH_SIZE");
//Resizes
if (!StringUtils.isBlank(slargeImageHeight) && !StringUtils.isBlank(slargeImageWidth)) { // &&
// !StringUtils.isBlank(ssmallImageHeight)
// &&
// !StringUtils.isBlank(ssmallImageWidth))
// {
FileNameMap fileNameMap = URLConnection.getFileNameMap();
String contentType = fileNameMap.getContentTypeFor(contentImage.getFileName());
String extension = null;
if (contentType != null) {
extension = contentType.substring(contentType.indexOf('/') + 1, contentType.length());
}
if (extension == null) {
extension = "jpeg";
}
int largeImageHeight = Integer.parseInt(slargeImageHeight);
int largeImageWidth = Integer.parseInt(slargeImageWidth);
if (largeImageHeight <= 0 || largeImageWidth <= 0) {
String sizeMsg =
"Image configuration set to an invalid value [PRODUCT_IMAGE_HEIGHT_SIZE] "
+ largeImageHeight + " , [PRODUCT_IMAGE_WIDTH_SIZE] " + largeImageWidth;
LOGGER.error(sizeMsg);
throw new ServiceException(sizeMsg);
}
if (!StringUtils.isBlank(configuration.getProperty(CROP_UPLOADED_IMAGES))
&& configuration.getProperty(CROP_UPLOADED_IMAGES).equals(Constants.TRUE)) {
// crop image
ProductImageCropUtils utils =
new ProductImageCropUtils(bufferedImage, largeImageWidth, largeImageHeight);
if (utils.isCropeable()) {
bufferedImage = utils.getCroppedImage();
}
}
// do not keep a large image for now, just take care of the regular image and a small image
// resize large
// ByteArrayOutputStream output = new ByteArrayOutputStream();
BufferedImage largeResizedImage =
ProductImageSizeUtils.resizeWithRatio(bufferedImage, largeImageWidth, largeImageHeight);
File tempLarge =
File.createTempFile(new StringBuilder().append(productImage.getProduct().getId())
.append("tmpLarge").toString(), "." + extension);
ImageIO.write(largeResizedImage, extension, tempLarge);
try(FileInputStream isLarge = new FileInputStream(tempLarge)) {
// IOUtils.copy(isLarge, output);
ImageContentFile largeContentImage = new ImageContentFile();
largeContentImage.setFileContentType(FileContentType.PRODUCT);
largeContentImage.setFileName(productImage.getProductImage());
largeContentImage.setFile(isLarge);
// largeContentImage.setBufferedImage(bufferedImage);
// largeContentImage.setFile(output);
// largeContentImage.setDefaultImage(false);
// largeContentImage.setImageName(new
// StringBuilder().append("L-").append(productImage.getProductImage()).toString());
uploadImage.addProductImage(productImage, largeContentImage);
// output.flush();
// output.close();
tempLarge.delete();
// now upload original
/*
* //resize small BufferedImage smallResizedImage = ProductImageSizeUtils.resize(cropped,
* smallImageWidth, smallImageHeight); File tempSmall = File.createTempFile(new
* StringBuilder().append(productImage.getProduct().getId()).append("tmpSmall").toString(),
* "." + extension ); ImageIO.write(smallResizedImage, extension, tempSmall);
*
* //byte[] is = IOUtils.toByteArray(new FileInputStream(tempSmall));
*
* FileInputStream isSmall = new FileInputStream(tempSmall);
*
* output = new ByteArrayOutputStream(); IOUtils.copy(isSmall, output);
*
*
* smallContentImage = new InputContentImage(ImageContentType.PRODUCT);
* smallContentImage.setFile(output); smallContentImage.setDefaultImage(false);
* smallContentImage.setImageName(new
* StringBuilder().append("S-").append(productImage.getProductImage()).toString());
*
* uploadImage.uploadProductImage(configuration, productImage, smallContentImage);
*
* output.flush(); output.close();
*
* tempSmall.delete();
*/
}
} else {
// small will be the same as the original
contentImage.setFileContentType(FileContentType.PRODUCT);
uploadImage.addProductImage(productImage, contentImage);
}
} catch (Exception e) {
throw new ServiceException(e);
} finally {
try {
productImage.getImage().close();
} catch (Exception ignore) {
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public ReadableProduct populate(Product source,
ReadableProduct target, MerchantStore store, Language language)
throws ConversionException {
Validate.notNull(pricingService, "Requires to set PricingService");
Validate.notNull(imageUtils, "Requires to set imageUtils");
Validate.notNull(language, "Language cannot be null");
try {
ProductDescription description = source.getProductDescription();
Set<ProductDescription> descriptions = source.getDescriptions();
for(ProductDescription desc : descriptions) {
if(desc.getLanguage()!=null && desc.getLanguage().getId().intValue() == language.getId().intValue()) {
description = desc;
break;
}
}
target.setId(source.getId());
target.setAvailable(source.isAvailable());
ProductSpecification specifications = new ProductSpecification();
specifications.setHeight(source.getProductHeight());
specifications.setLength(source.getProductLength());
specifications.setWeight(source.getProductWeight());
specifications.setWidth(source.getProductWidth());
target.setProductSpecifications(specifications);
target.setPreOrder(source.isPreOrder());
target.setRefSku(source.getRefSku());
target.setSortOrder(source.getSortOrder());
target.setCondition(source.getCondition());
//RENTAL
if(source.getRentalDuration()!=null) {
target.setRentalDuration(source.getRentalDuration());
}
if(source.getRentalPeriod()!=null) {
target.setRentalPeriod(source.getRentalPeriod());
}
target.setRentalStatus(source.getRentalStatus());
/**
* END RENTAL
*/
if(source.getOwner() != null) {
RentalOwner owner = new RentalOwner();
owner.setId(source.getOwner().getId());
owner.setEmailAddress(source.getOwner().getEmailAddress());
owner.setFirstName(source.getOwner().getBilling().getFirstName());
owner.setLastName(source.getOwner().getBilling().getLastName());
com.salesmanager.shop.model.customer.address.Address address = new com.salesmanager.shop.model.customer.address.Address();
address.setAddress(source.getOwner().getBilling().getAddress());
address.setBillingAddress(true);
address.setCity(source.getOwner().getBilling().getCity());
address.setCompany(source.getOwner().getBilling().getCompany());
address.setCountry(source.getOwner().getBilling().getCountry().getIsoCode());
address.setZone(source.getOwner().getBilling().getZone().getCode());
address.setLatitude(source.getOwner().getBilling().getLatitude());
address.setLongitude(source.getOwner().getBilling().getLongitude());
address.setPhone(source.getOwner().getBilling().getTelephone());
address.setPostalCode(source.getOwner().getBilling().getPostalCode());
owner.setAddress(address);
target.setOwner(owner);
}
if(source.getDateAvailable() != null) {
target.setDateAvailable(DateUtil.formatDate(source.getDateAvailable()));
}
if(source.getAuditSection()!=null) {
target.setCreationDate(DateUtil.formatDate(source.getAuditSection().getDateCreated()));
}
if(source.getProductReviewAvg()!=null) {
double avg = source.getProductReviewAvg().doubleValue();
double rating = Math.round(avg * 2) / 2.0f;
target.setRating(rating);
}
target.setProductVirtual(source.getProductVirtual());
if(source.getProductReviewCount()!=null) {
target.setRatingCount(source.getProductReviewCount().intValue());
}
if(description!=null) {
com.salesmanager.shop.model.catalog.product.ProductDescription tragetDescription = new com.salesmanager.shop.model.catalog.product.ProductDescription();
tragetDescription.setFriendlyUrl(description.getSeUrl());
tragetDescription.setName(description.getName());
tragetDescription.setId(description.getId());
if(!StringUtils.isBlank(description.getMetatagTitle())) {
tragetDescription.setTitle(description.getMetatagTitle());
} else {
tragetDescription.setTitle(description.getName());
}
tragetDescription.setMetaDescription(description.getMetatagDescription());
tragetDescription.setDescription(description.getDescription());
tragetDescription.setHighlights(description.getProductHighlight());
tragetDescription.setLanguage(description.getLanguage().getCode());
target.setDescription(tragetDescription);
}
if(source.getManufacturer()!=null) {
ManufacturerDescription manufacturer = source.getManufacturer().getDescriptions().iterator().next();
ReadableManufacturer manufacturerEntity = new ReadableManufacturer();
com.salesmanager.shop.model.catalog.manufacturer.ManufacturerDescription d = new com.salesmanager.shop.model.catalog.manufacturer.ManufacturerDescription();
d.setName(manufacturer.getName());
manufacturerEntity.setDescription(d);
manufacturerEntity.setId(source.getManufacturer().getId());
manufacturerEntity.setOrder(source.getManufacturer().getOrder());
manufacturerEntity.setCode(source.getManufacturer().getCode());
target.setManufacturer(manufacturerEntity);
}
if(source.getType() != null) {
ReadableProductType type = new ReadableProductType();
type.setId(source.getType().getId());
type.setCode(source.getType().getCode());
type.setName(source.getType().getCode());//need name
target.setType(type);
}
Set<ProductImage> images = source.getImages();
if(images!=null && images.size()>0) {
List<ReadableImage> imageList = new ArrayList<ReadableImage>();
String contextPath = imageUtils.getContextPath();
for(ProductImage img : images) {
ReadableImage prdImage = new ReadableImage();
prdImage.setImageName(img.getProductImage());
prdImage.setDefaultImage(img.isDefaultImage());
StringBuilder imgPath = new StringBuilder();
imgPath.append(contextPath).append(imageUtils.buildProductImageUtils(store, source.getSku(), img.getProductImage()));
prdImage.setImageUrl(imgPath.toString());
prdImage.setId(img.getId());
prdImage.setImageType(img.getImageType());
if(img.getProductImageUrl()!=null){
prdImage.setExternalUrl(img.getProductImageUrl());
}
if(img.getImageType()==1 && img.getProductImageUrl()!=null) {//video
prdImage.setVideoUrl(img.getProductImageUrl());
}
if(prdImage.isDefaultImage()) {
target.setImage(prdImage);
}
imageList.add(prdImage);
}
target
.setImages(imageList);
}
if(!CollectionUtils.isEmpty(source.getCategories())) {
ReadableCategoryPopulator categoryPopulator = new ReadableCategoryPopulator();
List<ReadableCategory> categoryList = new ArrayList<ReadableCategory>();
for(Category category : source.getCategories()) {
ReadableCategory readableCategory = new ReadableCategory();
categoryPopulator.populate(category, readableCategory, store, language);
categoryList.add(readableCategory);
}
target.setCategories(categoryList);
}
if(!CollectionUtils.isEmpty(source.getAttributes())) {
Set<ProductAttribute> attributes = source.getAttributes();
//split read only and options
Map<Long,ReadableProductAttribute> readOnlyAttributes = null;
Map<Long,ReadableProductOption> selectableOptions = null;
if(!CollectionUtils.isEmpty(attributes)) {
for(ProductAttribute attribute : attributes) {
ReadableProductOption opt = null;
ReadableProductAttribute attr = null;
ReadableProductOptionValue optValue = new ReadableProductOptionValue();
ReadableProductAttributeValue attrValue = new ReadableProductAttributeValue();
ProductOptionValue optionValue = attribute.getProductOptionValue();
if(attribute.getAttributeDisplayOnly()) {//read only attribute
if(readOnlyAttributes==null) {
readOnlyAttributes = new TreeMap<Long,ReadableProductAttribute>();
}
attr = readOnlyAttributes.get(attribute.getProductOption().getId());
if(attr==null) {
attr = createAttribute(attribute, language);
}
if(attr!=null) {
readOnlyAttributes.put(attribute.getProductOption().getId(), attr);
}
attrValue.setDefaultValue(attribute.getAttributeDefault());
if(attribute.getProductOptionValue()!=null) {
attrValue.setId(attribute.getProductOptionValue().getId());//id of the option value
} else {
attrValue.setId(attribute.getId());
}
attrValue.setLang(language.getCode());
attrValue.setSortOrder(0);
if(attribute.getProductOptionSortOrder()!=null) {
attrValue.setSortOrder(attribute.getProductOptionSortOrder().intValue());
}
List<ProductOptionValueDescription> podescriptions = optionValue.getDescriptionsSettoList();
ProductOptionValueDescription podescription = null;
if(podescriptions!=null && podescriptions.size()>0) {
podescription = podescriptions.get(0);
if(descriptions.size()>1) {
for(ProductOptionValueDescription optionValueDescription : podescriptions) {
if(optionValueDescription.getLanguage().getId().intValue()==language.getId().intValue()) {
podescription = optionValueDescription;
break;
}
}
}
}
attrValue.setName(podescription.getName());
attrValue.setDescription(podescription.getDescription());
if(attr!=null) {
attr.getAttributeValues().add(attrValue);
}
} else {//selectable option
if(selectableOptions==null) {
selectableOptions = new TreeMap<Long,ReadableProductOption>();
}
opt = selectableOptions.get(attribute.getProductOption().getId());
if(opt==null) {
opt = createOption(attribute, language);
}
if(opt!=null) {
selectableOptions.put(attribute.getProductOption().getId(), opt);
}
optValue.setDefaultValue(attribute.getAttributeDefault());
optValue.setId(attribute.getProductOptionValue().getId());
optValue.setLang(language.getCode());
if(attribute.getProductAttributePrice()!=null && attribute.getProductAttributePrice().doubleValue()>0) {
String formatedPrice = pricingService.getDisplayAmount(attribute.getProductAttributePrice(), store);
optValue.setPrice(formatedPrice);
}
if(!StringUtils.isBlank(attribute.getProductOptionValue().getProductOptionValueImage())) {
optValue.setImage(imageUtils.buildProductPropertyImageUtils(store, attribute.getProductOptionValue().getProductOptionValueImage()));
}
optValue.setSortOrder(0);
if(attribute.getProductOptionSortOrder()!=null) {
optValue.setSortOrder(attribute.getProductOptionSortOrder().intValue());
}
List<ProductOptionValueDescription> podescriptions = optionValue.getDescriptionsSettoList();
ProductOptionValueDescription podescription = null;
if(podescriptions!=null && podescriptions.size()>0) {
podescription = podescriptions.get(0);
if(descriptions.size()>1) {
for(ProductOptionValueDescription optionValueDescription : podescriptions) {
if(optionValueDescription.getLanguage().getId().intValue()==language.getId().intValue()) {
podescription = optionValueDescription;
break;
}
}
}
}
optValue.setName(podescription.getName());
optValue.setDescription(podescription.getDescription());
if(opt!=null) {
opt.getOptionValues().add(optValue);
}
}
}
}
if(selectableOptions != null) {
List<ReadableProductOption> options = new ArrayList<ReadableProductOption>(selectableOptions.values());
target.setOptions(options);
}
}
//remove products from invisible category -> set visible = false
/* Set<Category> categories = source.getCategories();
boolean isVisible = true;
if(!CollectionUtils.isEmpty(categories)) {
for(Category c : categories) {
if(c.isVisible()) {
isVisible = true;
break;
} else {
isVisible = false;
}
}
}*/
//target.setVisible(isVisible);
target.setSku(source.getSku());
FinalPrice price = pricingService.calculateProductPrice(source);
target.setFinalPrice(pricingService.getDisplayAmount(price.getFinalPrice(), store));
target.setPrice(price.getFinalPrice());
target.setOriginalPrice(pricingService.getDisplayAmount(price.getOriginalPrice(), store));
if(price.isDiscounted()) {
target.setDiscounted(true);
}
//availability
for(ProductAvailability availability : source.getAvailabilities()) {
if(availability.getRegion().equals(Constants.ALL_REGIONS)) {//TODO REL 2.1 accept a region
target.setQuantity(availability.getProductQuantity());
target.setQuantityOrderMaximum(availability.getProductQuantityOrderMax());
target.setQuantityOrderMinimum(availability.getProductQuantityOrderMin());
if(availability.getProductQuantity().intValue() > 0 && target.isAvailable()) {
target.setCanBePurchased(true);
}
}
}
return target;
} catch (Exception e) {
throw new ConversionException(e);
}
}
#location 15
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public ReadableProduct populate(Product source,
ReadableProduct target, MerchantStore store, Language language)
throws ConversionException {
Validate.notNull(pricingService, "Requires to set PricingService");
Validate.notNull(imageUtils, "Requires to set imageUtils");
//Validate.notNull(language, "Language cannot be null");
try {
List<com.salesmanager.shop.model.catalog.product.ProductDescription> fulldescriptions = new ArrayList<com.salesmanager.shop.model.catalog.product.ProductDescription>();
if(language == null) {
target = new ReadableProductFull();
}
ProductDescription description = source.getProductDescription();
if(source.getDescriptions()!=null && source.getDescriptions().size()>0) {
for(ProductDescription desc : source.getDescriptions()) {
if(language != null && desc.getLanguage()!=null && desc.getLanguage().getId().intValue() == language.getId().intValue()) {
description = desc;
break;
} else {
fulldescriptions.add(populateDescription(desc));
}
}
}
target.setId(source.getId());
target.setAvailable(source.isAvailable());
ProductSpecification specifications = new ProductSpecification();
specifications.setHeight(source.getProductHeight());
specifications.setLength(source.getProductLength());
specifications.setWeight(source.getProductWeight());
specifications.setWidth(source.getProductWidth());
target.setProductSpecifications(specifications);
target.setPreOrder(source.isPreOrder());
target.setRefSku(source.getRefSku());
target.setSortOrder(source.getSortOrder());
target.setCondition(source.getCondition());
//RENTAL
if(source.getRentalDuration()!=null) {
target.setRentalDuration(source.getRentalDuration());
}
if(source.getRentalPeriod()!=null) {
target.setRentalPeriod(source.getRentalPeriod());
}
target.setRentalStatus(source.getRentalStatus());
/**
* END RENTAL
*/
if(source.getOwner() != null) {
RentalOwner owner = new RentalOwner();
owner.setId(source.getOwner().getId());
owner.setEmailAddress(source.getOwner().getEmailAddress());
owner.setFirstName(source.getOwner().getBilling().getFirstName());
owner.setLastName(source.getOwner().getBilling().getLastName());
com.salesmanager.shop.model.customer.address.Address address = new com.salesmanager.shop.model.customer.address.Address();
address.setAddress(source.getOwner().getBilling().getAddress());
address.setBillingAddress(true);
address.setCity(source.getOwner().getBilling().getCity());
address.setCompany(source.getOwner().getBilling().getCompany());
address.setCountry(source.getOwner().getBilling().getCountry().getIsoCode());
address.setZone(source.getOwner().getBilling().getZone().getCode());
address.setLatitude(source.getOwner().getBilling().getLatitude());
address.setLongitude(source.getOwner().getBilling().getLongitude());
address.setPhone(source.getOwner().getBilling().getTelephone());
address.setPostalCode(source.getOwner().getBilling().getPostalCode());
owner.setAddress(address);
target.setOwner(owner);
}
if(source.getDateAvailable() != null) {
target.setDateAvailable(DateUtil.formatDate(source.getDateAvailable()));
}
if(source.getAuditSection()!=null) {
target.setCreationDate(DateUtil.formatDate(source.getAuditSection().getDateCreated()));
}
if(source.getProductReviewAvg()!=null) {
double avg = source.getProductReviewAvg().doubleValue();
double rating = Math.round(avg * 2) / 2.0f;
target.setRating(rating);
}
target.setProductVirtual(source.getProductVirtual());
if(source.getProductReviewCount()!=null) {
target.setRatingCount(source.getProductReviewCount().intValue());
}
if(description!=null) {
//com.salesmanager.shop.model.catalog.product.ProductDescription tragetDescription = new com.salesmanager.shop.model.catalog.product.ProductDescription();
com.salesmanager.shop.model.catalog.product.ProductDescription tragetDescription = populateDescription(description);
/* tragetDescription.setFriendlyUrl(description.getSeUrl());
tragetDescription.setName(description.getName());
tragetDescription.setId(description.getId());
if(!StringUtils.isBlank(description.getMetatagTitle())) {
tragetDescription.setTitle(description.getMetatagTitle());
} else {
tragetDescription.setTitle(description.getName());
}
tragetDescription.setMetaDescription(description.getMetatagDescription());
tragetDescription.setDescription(description.getDescription());
tragetDescription.setHighlights(description.getProductHighlight());
tragetDescription.setLanguage(description.getLanguage().getCode());*/
target.setDescription(tragetDescription);
}
if(source.getManufacturer()!=null) {
ManufacturerDescription manufacturer = source.getManufacturer().getDescriptions().iterator().next();
ReadableManufacturer manufacturerEntity = new ReadableManufacturer();
com.salesmanager.shop.model.catalog.manufacturer.ManufacturerDescription d = new com.salesmanager.shop.model.catalog.manufacturer.ManufacturerDescription();
d.setName(manufacturer.getName());
manufacturerEntity.setDescription(d);
manufacturerEntity.setId(source.getManufacturer().getId());
manufacturerEntity.setOrder(source.getManufacturer().getOrder());
manufacturerEntity.setCode(source.getManufacturer().getCode());
target.setManufacturer(manufacturerEntity);
}
if(source.getType() != null) {
ReadableProductType type = new ReadableProductType();
type.setId(source.getType().getId());
type.setCode(source.getType().getCode());
type.setName(source.getType().getCode());//need name
target.setType(type);
}
Set<ProductImage> images = source.getImages();
if(images!=null && images.size()>0) {
List<ReadableImage> imageList = new ArrayList<ReadableImage>();
String contextPath = imageUtils.getContextPath();
for(ProductImage img : images) {
ReadableImage prdImage = new ReadableImage();
prdImage.setImageName(img.getProductImage());
prdImage.setDefaultImage(img.isDefaultImage());
StringBuilder imgPath = new StringBuilder();
imgPath.append(contextPath).append(imageUtils.buildProductImageUtils(store, source.getSku(), img.getProductImage()));
prdImage.setImageUrl(imgPath.toString());
prdImage.setId(img.getId());
prdImage.setImageType(img.getImageType());
if(img.getProductImageUrl()!=null){
prdImage.setExternalUrl(img.getProductImageUrl());
}
if(img.getImageType()==1 && img.getProductImageUrl()!=null) {//video
prdImage.setVideoUrl(img.getProductImageUrl());
}
if(prdImage.isDefaultImage()) {
target.setImage(prdImage);
}
imageList.add(prdImage);
}
target
.setImages(imageList);
}
if(!CollectionUtils.isEmpty(source.getCategories())) {
ReadableCategoryPopulator categoryPopulator = new ReadableCategoryPopulator();
List<ReadableCategory> categoryList = new ArrayList<ReadableCategory>();
for(Category category : source.getCategories()) {
ReadableCategory readableCategory = new ReadableCategory();
categoryPopulator.populate(category, readableCategory, store, language);
categoryList.add(readableCategory);
}
target.setCategories(categoryList);
}
if(!CollectionUtils.isEmpty(source.getAttributes())) {
Set<ProductAttribute> attributes = source.getAttributes();
//split read only and options
Map<Long,ReadableProductAttribute> readOnlyAttributes = null;
Map<Long,ReadableProductOption> selectableOptions = null;
if(!CollectionUtils.isEmpty(attributes)) {
for(ProductAttribute attribute : attributes) {
ReadableProductOption opt = null;
ReadableProductAttribute attr = null;
ReadableProductOptionValue optValue = new ReadableProductOptionValue();
ReadableProductAttributeValue attrValue = new ReadableProductAttributeValue();
ProductOptionValue optionValue = attribute.getProductOptionValue();
if(attribute.getAttributeDisplayOnly()) {//read only attribute
if(readOnlyAttributes==null) {
readOnlyAttributes = new TreeMap<Long,ReadableProductAttribute>();
}
attr = readOnlyAttributes.get(attribute.getProductOption().getId());
if(attr==null) {
attr = createAttribute(attribute, language);
}
if(attr!=null) {
readOnlyAttributes.put(attribute.getProductOption().getId(), attr);
}
attrValue.setDefaultValue(attribute.getAttributeDefault());
if(attribute.getProductOptionValue()!=null) {
attrValue.setId(attribute.getProductOptionValue().getId());//id of the option value
} else {
attrValue.setId(attribute.getId());
}
attrValue.setLang(language.getCode());
attrValue.setSortOrder(0);
if(attribute.getProductOptionSortOrder()!=null) {
attrValue.setSortOrder(attribute.getProductOptionSortOrder().intValue());
}
List<ProductOptionValueDescription> podescriptions = optionValue.getDescriptionsSettoList();
ProductOptionValueDescription podescription = null;
if(podescriptions!=null && podescriptions.size()>0) {
podescription = podescriptions.get(0);
if(podescriptions.size()>1) {
for(ProductOptionValueDescription optionValueDescription : podescriptions) {
if(optionValueDescription.getLanguage().getId().intValue()==language.getId().intValue()) {
podescription = optionValueDescription;
break;
}
}
}
}
attrValue.setName(podescription.getName());
attrValue.setDescription(podescription.getDescription());
if(attr!=null) {
attr.getAttributeValues().add(attrValue);
}
} else {//selectable option
if(selectableOptions==null) {
selectableOptions = new TreeMap<Long,ReadableProductOption>();
}
opt = selectableOptions.get(attribute.getProductOption().getId());
if(opt==null) {
opt = createOption(attribute, language);
}
if(opt!=null) {
selectableOptions.put(attribute.getProductOption().getId(), opt);
}
optValue.setDefaultValue(attribute.getAttributeDefault());
optValue.setId(attribute.getProductOptionValue().getId());
optValue.setLang(language.getCode());
if(attribute.getProductAttributePrice()!=null && attribute.getProductAttributePrice().doubleValue()>0) {
String formatedPrice = pricingService.getDisplayAmount(attribute.getProductAttributePrice(), store);
optValue.setPrice(formatedPrice);
}
if(!StringUtils.isBlank(attribute.getProductOptionValue().getProductOptionValueImage())) {
optValue.setImage(imageUtils.buildProductPropertyImageUtils(store, attribute.getProductOptionValue().getProductOptionValueImage()));
}
optValue.setSortOrder(0);
if(attribute.getProductOptionSortOrder()!=null) {
optValue.setSortOrder(attribute.getProductOptionSortOrder().intValue());
}
List<ProductOptionValueDescription> podescriptions = optionValue.getDescriptionsSettoList();
ProductOptionValueDescription podescription = null;
if(podescriptions!=null && podescriptions.size()>0) {
podescription = podescriptions.get(0);
if(podescriptions.size()>1) {
for(ProductOptionValueDescription optionValueDescription : podescriptions) {
if(optionValueDescription.getLanguage().getId().intValue()==language.getId().intValue()) {
podescription = optionValueDescription;
break;
}
}
}
}
optValue.setName(podescription.getName());
optValue.setDescription(podescription.getDescription());
if(opt!=null) {
opt.getOptionValues().add(optValue);
}
}
}
}
if(selectableOptions != null) {
List<ReadableProductOption> options = new ArrayList<ReadableProductOption>(selectableOptions.values());
target.setOptions(options);
}
}
//remove products from invisible category -> set visible = false
/* Set<Category> categories = source.getCategories();
boolean isVisible = true;
if(!CollectionUtils.isEmpty(categories)) {
for(Category c : categories) {
if(c.isVisible()) {
isVisible = true;
break;
} else {
isVisible = false;
}
}
}*/
//target.setVisible(isVisible);
target.setSku(source.getSku());
FinalPrice price = pricingService.calculateProductPrice(source);
target.setFinalPrice(pricingService.getDisplayAmount(price.getFinalPrice(), store));
target.setPrice(price.getFinalPrice());
target.setOriginalPrice(pricingService.getDisplayAmount(price.getOriginalPrice(), store));
if(price.isDiscounted()) {
target.setDiscounted(true);
}
//availability
for(ProductAvailability availability : source.getAvailabilities()) {
if(availability.getRegion().equals(Constants.ALL_REGIONS)) {//TODO REL 2.1 accept a region
target.setQuantity(availability.getProductQuantity());
target.setQuantityOrderMaximum(availability.getProductQuantityOrderMax());
target.setQuantityOrderMinimum(availability.getProductQuantityOrderMin());
if(availability.getProductQuantity().intValue() > 0 && target.isAvailable()) {
target.setCanBePurchased(true);
}
}
}
if(target instanceof ReadableProductFull) {
((ReadableProductFull)target).setDescriptions(fulldescriptions);
}
return target;
} catch (Exception e) {
throw new ConversionException(e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public JSONObject actionReadFile(HttpServletRequest request, HttpServletResponse response) throws Exception {
String path = getPath(request, "path");
File file = new File(docRoot.getPath() + path);
if (!file.exists()) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
if (file.isDirectory()) {
return getErrorResponse(dictionnary.getProperty("FORBIDDEN_ACTION_DIR"));
}
if (!isAllowedName(file.getName(), false)) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
// check if file is readable
if (!file.canRead()) {
return getErrorResponse(dictionnary.getProperty("NOT_ALLOWED_SYSTEM"));
}
String filename = file.getName();
String fileExt = filename.substring(filename.lastIndexOf(".") + 1);
String mimeType = FileManagerUtils.getMimeTypeByExt(fileExt);
long fileSize = file.length();
//TO DO : IMPLEMENT HTTP RANGE FOR STREAM FILE (AUDIO/VIDEO)
response.setContentType(mimeType);
response.setHeader("Content-Length", Long.toString(fileSize));
response.setHeader("Content-Transfer-Encoding", "binary");
response.setHeader("Content-Disposition", "inline; filename=\"" + filename + "\"");
try {
FileUtils.copy(new BufferedInputStream(new FileInputStream(file)), response.getOutputStream());
} catch (IOException e) {
throw new Exception("Read file error: " + path, e);
}
return null;
}
#location 37
#vulnerability type RESOURCE_LEAK | #fixed code
public JSONObject actionReadFile(HttpServletRequest request, HttpServletResponse response) throws Exception {
String path = getPath(request, "path");
File file = new File(docRoot.getPath() + path);
if (!file.exists()) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
if (file.isDirectory()) {
return getErrorResponse(dictionnary.getProperty("FORBIDDEN_ACTION_DIR"));
}
if (!isAllowedName(file.getName(), false)) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
// check if file is readable
if (!file.canRead()) {
return getErrorResponse(dictionnary.getProperty("NOT_ALLOWED_SYSTEM"));
}
String filename = file.getName();
String fileExt = filename.substring(filename.lastIndexOf(".") + 1);
String mimeType = FileManagerUtils.getMimeTypeByExt(fileExt);
long fileSize = file.length();
//TO DO : IMPLEMENT HTTP RANGE FOR STREAM FILE (AUDIO/VIDEO)
response.setContentType(mimeType);
response.setHeader("Content-Length", Long.toString(fileSize));
response.setHeader("Content-Transfer-Encoding", "binary");
response.setHeader("Content-Disposition", "inline; filename=\"" + filename + "\"");
try(BufferedInputStream bufferedInputStream = new BufferedInputStream(new FileInputStream(file))) {
FileUtils.copy(bufferedInputStream, response.getOutputStream());
} catch (IOException e) {
throw new Exception("Read file error: " + path, e);
}
return null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private Customer convertPersistableCustomerToCustomer(PersistableCustomer customer, MerchantStore store) {
Customer cust = new Customer();
CustomerPopulator populator = new CustomerPopulator();
populator.setCountryService(countryService);
populator.setCustomerOptionService(customerOptionService);
populator.setCustomerOptionValueService(customerOptionValueService);
populator.setLanguageService(languageService);
populator.setLanguageService(languageService);
populator.setZoneService(zoneService);
populator.setGroupService(groupService);
try{
populator.populate(customer, cust, store, store.getDefaultLanguage());
} catch (ConversionException e) {
throw new ConversionRuntimeException(e);
}
List<Group> groups = getListOfGroups(GroupType.CUSTOMER);
cust.setGroups(groups);
Locale customerLocale = LocaleUtils.getLocale(cust.getDefaultLanguage());
String password = customer.getClearPassword();
if (StringUtils.isBlank(password)) {
password = UserReset.generateRandomString();
customer.setClearPassword(password);
}
@SuppressWarnings("deprecation")
String encodedPassword = passwordEncoder.encode(password);
if (!StringUtils.isBlank(customer.getEncodedPassword())) {
encodedPassword = customer.getEncodedPassword();
// customer.setClearPassword("");
}
cust.setPassword(encodedPassword);
return cust;
}
#location 23
#vulnerability type NULL_DEREFERENCE | #fixed code
private Customer convertPersistableCustomerToCustomer(PersistableCustomer customer, MerchantStore store) {
Customer cust = new Customer();
CustomerPopulator populator = new CustomerPopulator();
populator.setCountryService(countryService);
populator.setCustomerOptionService(customerOptionService);
populator.setCustomerOptionValueService(customerOptionValueService);
populator.setLanguageService(languageService);
populator.setLanguageService(languageService);
populator.setZoneService(zoneService);
populator.setGroupService(groupService);
try{
populator.populate(customer, cust, store, store.getDefaultLanguage());
} catch (ConversionException e) {
throw new ConversionRuntimeException(e);
}
List<Group> groups = getListOfGroups(GroupType.CUSTOMER);
cust.setGroups(groups);
String password = customer.getClearPassword();
if (StringUtils.isBlank(password)) {
password = UserReset.generateRandomString();
customer.setClearPassword(password);
}
String encodedPassword = passwordEncoder.encode(password);
if (!StringUtils.isBlank(customer.getEncodedPassword())) {
encodedPassword = customer.getEncodedPassword();
// customer.setClearPassword("");
}
cust.setPassword(encodedPassword);
return cust;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@SuppressWarnings({"rawtypes", "unchecked"})
@Override
public GenericEntityList listByCriteria(MerchantStoreCriteria criteria) throws ServiceException {
try {
StringBuilder req = new StringBuilder();
req.append(
"select distinct m from MerchantStore m left join fetch m.country mc left join fetch m.parent cp left join fetch m.currency mc left join fetch m.zone mz left join fetch m.defaultLanguage md left join fetch m.languages mls");
StringBuilder countBuilder = new StringBuilder();
countBuilder.append("select count(distinct m) from MerchantStore m");
if (criteria.getCode() != null) {
req.append(" where lower(m.code) like:code");
countBuilder.append(" where lower(m.code) like:code");
}
if (criteria.getName() != null) {
if (criteria.getCode() == null) {
req.append(" where");
countBuilder.append(" where ");
} else {
req.append(" or");
countBuilder.append(" or ");
}
req.append(" lower(m.storename) like:name");
countBuilder.append(" lower(m.storename) like:name");
}
if (!StringUtils.isBlank(criteria.getCriteriaOrderByField())) {
req.append(" order by m." + criteria.getCriteriaOrderByField() + " "
+ criteria.getOrderBy().name().toLowerCase());
}
Query countQ = this.em.createQuery(countBuilder.toString());
String hql = req.toString();
Query q = this.em.createQuery(hql);
if (criteria.getCode() != null) {
countQ.setParameter("code", "%" + criteria.getCode().toLowerCase() + "%");
q.setParameter("code", "%" + criteria.getCode().toLowerCase() + "%");
}
if (criteria.getName() != null) {
countQ.setParameter("name", "%" + criteria.getCode().toLowerCase() + "%");
q.setParameter("name", "%" + criteria.getCode().toLowerCase() + "%");
}
if (criteria.getUser() != null) {
}
Number count = (Number) countQ.getSingleResult();
GenericEntityList entityList = new GenericEntityList();
entityList.setTotalCount(count.intValue());
q = RepositoryHelper.paginateQuery(q, count, entityList, criteria);
/* if(criteria.isLegacyPagination()) {
if (criteria.getMaxCount() > 0) {
q.setFirstResult(criteria.getStartIndex());
if (criteria.getMaxCount() < count.intValue()) {
q.setMaxResults(criteria.getMaxCount());
} else {
q.setMaxResults(count.intValue());
}
}
} else {
q.setFirstResult((criteria.getStartPage()-1) * criteria.getPageSize());
q.setMaxResults(criteria.getPageSize());
int lastPageNumber = (int) ((count.intValue() / criteria.getPageSize()) + 1);
entityList.setTotalPage(lastPageNumber);
}*/
List<MerchantStore> stores = q.getResultList();
entityList.setList(stores);
return entityList;
} catch (javax.persistence.NoResultException ers) {
} catch (Exception e) {
LOGGER.error(e.getMessage());
throw new ServiceException(e);
}
return null;
}
#location 41
#vulnerability type NULL_DEREFERENCE | #fixed code
@SuppressWarnings({"rawtypes", "unchecked"})
@Override
public GenericEntityList listByCriteria(MerchantStoreCriteria criteria) throws ServiceException {
try {
StringBuilder req = new StringBuilder();
req.append(
"select distinct m from MerchantStore m left join fetch m.country mc left join fetch m.parent cp left join fetch m.currency mc left join fetch m.zone mz left join fetch m.defaultLanguage md left join fetch m.languages mls");
StringBuilder countBuilder = new StringBuilder();
countBuilder.append("select count(distinct m) from MerchantStore m");
if (criteria.getCode() != null) {
req.append(" where lower(m.code) like:code");
countBuilder.append(" where lower(m.code) like:code");
}
if (criteria.getName() != null) {
if (criteria.getCode() == null) {
req.append(" where");
countBuilder.append(" where ");
} else {
req.append(" or");
countBuilder.append(" or ");
}
req.append(" lower(m.storename) like:name");
countBuilder.append(" lower(m.storename) like:name");
}
if (!StringUtils.isBlank(criteria.getCriteriaOrderByField())) {
req.append(" order by m." + criteria.getCriteriaOrderByField() + " "
+ criteria.getOrderBy().name().toLowerCase());
}
Query countQ = this.em.createQuery(countBuilder.toString());
String hql = req.toString();
Query q = this.em.createQuery(hql);
if (criteria.getCode() != null) {
countQ.setParameter("code", "%" + criteria.getCode().toLowerCase() + "%");
q.setParameter("code", "%" + criteria.getCode().toLowerCase() + "%");
}
if (criteria.getName() != null) {
countQ.setParameter("name", "%" + criteria.getCode().toLowerCase() + "%");
q.setParameter("name", "%" + criteria.getCode().toLowerCase() + "%");
}
if (criteria.getUser() != null) {
}
Number count = (Number) countQ.getSingleResult();
GenericEntityList entityList = new GenericEntityList();
entityList.setTotalCount(count.intValue());
q = RepositoryHelper.paginateQuery(q, count, entityList, criteria);
List<MerchantStore> stores = q.getResultList();
entityList.setList(stores);
return entityList;
} catch (javax.persistence.NoResultException ers) {
} catch (Exception e) {
LOGGER.error(e.getMessage());
throw new ServiceException(e);
}
return null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public ReadableContentPage getContentPage(String code, MerchantStore store, Language language) {
Validate.notNull(code, "Content code cannot be null");
Validate.notNull(store, "MerchantStore cannot be null");
try {
Content content = null;
if(language == null) {
Optional.ofNullable(contentService.getByCode(code, store))
.orElseThrow(() -> new ResourceNotFoundException("No page found : " + code));
} else {
Optional.ofNullable(contentService.getByCode(code, store, language))
.orElseThrow(() -> new ResourceNotFoundException("No page found : " + code));
}
return convertContentToReadableContentPage(store, language, content);
} catch (ServiceException e) {
throw new ServiceRuntimeException("Error while getting page " + e.getMessage(), e);
}
}
#location 18
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public ReadableContentPage getContentPage(String code, MerchantStore store, Language language) {
Validate.notNull(code, "Content code cannot be null");
Validate.notNull(store, "MerchantStore cannot be null");
try {
Content content = null;
if(language == null) {
content = Optional.ofNullable(contentService.getByCode(code, store))
.orElseThrow(() -> new ResourceNotFoundException("No page found : " + code));
} else {
content = Optional.ofNullable(contentService.getByCode(code, store, language))
.orElseThrow(() -> new ResourceNotFoundException("No page found : " + code));
}
return convertContentToReadableContentPage(store, language, content);
} catch (ServiceException e) {
throw new ServiceRuntimeException("Error while getting page " + e.getMessage(), e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void prePostProcessShippingQuotes(
ShippingQuote quote,
List<PackageDetails> packages,
BigDecimal orderTotal,
Delivery delivery,
ShippingOrigin origin,
MerchantStore store,
IntegrationConfiguration globalShippingConfiguration,
IntegrationModule currentModule,
ShippingConfiguration shippingConfiguration,
List<IntegrationModule> allModules,
Locale locale)
throws IntegrationException {
Validate.notNull(delivery, "Delivery cannot be null");
Validate.notNull(currentModule, "IntegrationModule cannot be null");
Validate.notNull(delivery.getCountry(), "Delivery.country cannot be null");
Validate.notNull(allModules, "List<IntegrationModule> cannot be null");
Validate.notNull(packages, "packages cannot be null");
Validate.notEmpty(packages, "packages cannot be empty");
Double distance = null;
if(quote!=null) {
//look if distance has been calculated
if(quote.getQuoteInformations()!=null) {
if(quote.getQuoteInformations().containsKey(Constants.DISTANCE_KEY)) {
distance = (Double)quote.getQuoteInformations().get(Constants.DISTANCE_KEY);
}
}
}
//calculate volume (L x W x H)
Double volume = null;
Double weight = 0D;
Double size = null;
//calculate weight, volume and largest size
for(PackageDetails pack : packages) {
weight = weight + pack.getShippingWeight();
Double tmpVolume = pack.getShippingHeight() * pack.getShippingLength() * pack.getShippingWidth();
if(volume == null || tmpVolume.doubleValue() > volume.doubleValue()) { //take the largest volume
volume = tmpVolume;
}
//largest size
List<Double> sizeList = new ArrayList<Double>();
sizeList.add(pack.getShippingHeight());
sizeList.add(pack.getShippingLength());
sizeList.add(pack.getShippingWidth());
Double maxSize = (Double)Collections.max(sizeList);
if(size==null || maxSize.doubleValue() > size.doubleValue()) {
size = maxSize.doubleValue();
}
}
//Build a ShippingInputParameters
ShippingInputParameters inputParameters = new ShippingInputParameters();
inputParameters.setWeight((long)weight.doubleValue());
inputParameters.setCountry(delivery.getCountry().getIsoCode());
if(delivery.getZone()!=null) {
inputParameters.setProvince(delivery.getZone().getCode());
} else {
inputParameters.setProvince(delivery.getState());
}
//inputParameters.setModuleName(currentModule.getCode());
if(delivery.getZone().getCode()!=null) {
inputParameters.setProvince(delivery.getZone().getCode());
}
if(size!=null) {
inputParameters.setSize((long)size.doubleValue());
}
if(distance!=null) {
double ddistance = distance.doubleValue();
long ldistance = (long)ddistance;
inputParameters.setDistance(ldistance);
}
if(volume!=null) {
inputParameters.setVolume((long)volume.doubleValue());
}
LOGGER.debug("Setting input parameters " + inputParameters.toString());
System.out.println(inputParameters.toString());
/**
* New code
*/
KieSession kieSession=droolsBeanFactory.getKieSession(ResourceFactory.newClassPathResource("com/salesmanager/drools/rules/ShippingDecision.drl"));
DecisionResponse resp = new DecisionResponse();
kieSession.insert(inputParameters);
kieSession.setGlobal("decision",resp);
kieSession.fireAllRules();
//System.out.println(resp.getModuleName());
inputParameters.setModuleName(resp.getModuleName());
LOGGER.debug("Using shipping nodule " + inputParameters.getModuleName());
if(!StringUtils.isBlank(inputParameters.getModuleName())) {
for(IntegrationModule toBeUsed : allModules) {
if(toBeUsed.getCode().equals(inputParameters.getModuleName())) {
quote.setCurrentShippingModule(toBeUsed);
break;
}
}
}
}
#location 69
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void prePostProcessShippingQuotes(
ShippingQuote quote,
List<PackageDetails> packages,
BigDecimal orderTotal,
Delivery delivery,
ShippingOrigin origin,
MerchantStore store,
IntegrationConfiguration globalShippingConfiguration,
IntegrationModule currentModule,
ShippingConfiguration shippingConfiguration,
List<IntegrationModule> allModules,
Locale locale)
throws IntegrationException {
Validate.notNull(delivery, "Delivery cannot be null");
Validate.notNull(currentModule, "IntegrationModule cannot be null");
Validate.notNull(delivery.getCountry(), "Delivery.country cannot be null");
Validate.notNull(allModules, "List<IntegrationModule> cannot be null");
Validate.notNull(packages, "packages cannot be null");
Validate.notEmpty(packages, "packages cannot be empty");
Double distance = null;
if(quote!=null) {
//look if distance has been calculated
if(quote.getQuoteInformations()!=null) {
if(quote.getQuoteInformations().containsKey(Constants.DISTANCE_KEY)) {
distance = (Double)quote.getQuoteInformations().get(Constants.DISTANCE_KEY);
}
}
}
//calculate volume (L x W x H)
Double volume = null;
Double weight = 0D;
Double size = null;
//calculate weight, volume and largest size
for(PackageDetails pack : packages) {
weight = weight + pack.getShippingWeight();
Double tmpVolume = pack.getShippingHeight() * pack.getShippingLength() * pack.getShippingWidth();
if(volume == null || tmpVolume.doubleValue() > volume.doubleValue()) { //take the largest volume
volume = tmpVolume;
}
//largest size
List<Double> sizeList = new ArrayList<Double>();
sizeList.add(pack.getShippingHeight());
sizeList.add(pack.getShippingLength());
sizeList.add(pack.getShippingWidth());
Double maxSize = (Double)Collections.max(sizeList);
if(size==null || maxSize.doubleValue() > size.doubleValue()) {
size = maxSize.doubleValue();
}
}
//Build a ShippingInputParameters
ShippingInputParameters inputParameters = new ShippingInputParameters();
inputParameters.setWeight((long)weight.doubleValue());
inputParameters.setCountry(delivery.getCountry().getIsoCode());
if(delivery.getZone()!=null && delivery.getZone().getCode()!=null) {
inputParameters.setProvince(delivery.getZone().getCode());
} else {
inputParameters.setProvince(delivery.getState());
}
//inputParameters.setModuleName(currentModule.getCode());
if(size!=null) {
inputParameters.setSize((long)size.doubleValue());
}
if(distance!=null) {
double ddistance = distance.doubleValue();
long ldistance = (long)ddistance;
inputParameters.setDistance(ldistance);
}
if(volume!=null) {
inputParameters.setVolume((long)volume.doubleValue());
}
LOGGER.debug("Setting input parameters " + inputParameters.toString());
System.out.println(inputParameters.toString());
/**
* New code
*/
KieSession kieSession=droolsBeanFactory.getKieSession(ResourceFactory.newClassPathResource("com/salesmanager/drools/rules/ShippingDecision.drl"));
DecisionResponse resp = new DecisionResponse();
kieSession.insert(inputParameters);
kieSession.setGlobal("decision",resp);
kieSession.fireAllRules();
//System.out.println(resp.getModuleName());
inputParameters.setModuleName(resp.getModuleName());
LOGGER.debug("Using shipping nodule " + inputParameters.getModuleName());
if(!StringUtils.isBlank(inputParameters.getModuleName())) {
for(IntegrationModule toBeUsed : allModules) {
if(toBeUsed.getCode().equals(inputParameters.getModuleName())) {
quote.setCurrentShippingModule(toBeUsed);
break;
}
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@SuppressWarnings("unchecked")
public JSONObject actionSaveFile(HttpServletRequest request) throws Exception {
String path = getPath(request, "path");
String content = request.getParameter("content");
File file = getFile(path);
if (!file.exists()) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
if (file.isDirectory()) {
return getErrorResponse(dictionnary.getProperty("NOT_ALLOWED"));
}
if (!hasPermission("edit") || !isEditable(file.getName())) {
return getErrorResponse(dictionnary.getProperty("FORBIDDEN_ACTION_DIR"));
}
if (!file.canWrite()) {
return getErrorResponse(dictionnary.getProperty("NOT_ALLOWED_SYSTEM"));
}
if (!isAllowedName(file.getName(), false)) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
try {
FileOutputStream oldFile = new FileOutputStream(file, false);
oldFile.write(content.getBytes());
oldFile.close();
} catch (IOException e) {
throw new Exception("Error writing modified file", e);
}
JSONObject result = new JSONObject();
JSONObject o = new JSONObject(getFileInfo(path));
result.put("data", o);
return result;
//return new JSONObject().put("data", new JSONObject(getFileInfo(path)));
}
#location 31
#vulnerability type RESOURCE_LEAK | #fixed code
@SuppressWarnings("unchecked")
public JSONObject actionSaveFile(HttpServletRequest request) throws Exception {
String path = getPath(request, "path");
String content = request.getParameter("content");
File file = getFile(path);
if (!file.exists()) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
if (file.isDirectory()) {
return getErrorResponse(dictionnary.getProperty("NOT_ALLOWED"));
}
if (!hasPermission("edit") || !isEditable(file.getName())) {
return getErrorResponse(dictionnary.getProperty("FORBIDDEN_ACTION_DIR"));
}
if (!file.canWrite()) {
return getErrorResponse(dictionnary.getProperty("NOT_ALLOWED_SYSTEM"));
}
if (!isAllowedName(file.getName(), false)) {
return getErrorResponse(dictionnary.getProperty("INVALID_DIRECTORY_OR_FILE"));
}
try(FileOutputStream oldFile = new FileOutputStream(file, false)) {
oldFile.write(content.getBytes());
} catch (IOException e) {
throw new Exception("Error writing modified file", e);
}
JSONObject result = new JSONObject();
JSONObject o = new JSONObject(getFileInfo(path));
result.put("data", o);
return result;
//return new JSONObject().put("data", new JSONObject(getFileInfo(path)));
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public Response index(LindenIndexRequest request) throws IOException {
if (request.getType().equals(IndexRequestType.SWAP_INDEX)) {
Response response;
try {
response = swapIndex(request.getIndexName());
} catch (Exception e) {
LOGGER.error("Swapping index " + request.getIndexName() + " failed, " + e);
throw new IOException("Swapping index " + request.getIndexName() + " failed!", e);
}
return response;
}
String indexName = request.getIndexName();
LindenCore core = currentLindenCore;
if (indexName != null && !indexName.equals(currentIndexName)) {
if (indexName.startsWith(NEXT_INDEX_NAME_PREFIX)) {
// Accept bootstrap index request after swap is done in case something unexpected happened
// that swap command is executed before bootstrap is done
if (!indexName.substring(NEXT_INDEX_NAME_PREFIX.length()).equals(currentIndexTimeStamp)) {
core = getLindenCore(indexName);
}
} else {
throw new IOException("Bad index name " + indexName + " in HotSwapLindenCoreImpl.");
}
}
return core.index(request);
}
#location 19
#vulnerability type THREAD_SAFETY_VIOLATION | #fixed code
@Override
public Response index(LindenIndexRequest request) throws IOException {
if (request.getType().equals(IndexRequestType.SWAP_INDEX)) {
Response response;
try {
response = swapIndex(request.getIndexName());
} catch (Exception e) {
LOGGER.error("Swapping index " + request.getIndexName() + " failed, " + e);
throw new IOException("Swapping index " + request.getIndexName() + " failed!", e);
}
return response;
}
String indexName = request.getIndexName();
LindenCore core = currentLindenCore;
if (indexName != null && !indexName.equals(currentIndexName)) {
if (indexName.startsWith(NEXT_INDEX_NAME_PREFIX)) {
// Accept bootstrap index request after swap is done in case something unexpected happened
// that swap command is executed before bootstrap is done
if (!indexName.substring(NEXT_INDEX_NAME_PREFIX.length()).equals(currentIndexVersion)) {
core = getLindenCore(indexName);
}
} else {
throw new IOException("Bad index name " + indexName + " in HotSwapLindenCoreImpl.");
}
}
return core.index(request);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void standard_syntax() throws Exception {
IfStatementTree tree = parse("if ($a) {} else {}", PHPLexicalGrammar.IF_STATEMENT);
assertThat(tree.is(Kind.IF_STATEMENT)).isTrue();
assertThat(tree.ifToken().text()).isEqualTo("if");
assertThat(tree.condition()).isNotNull();
assertThat(tree.statements()).hasSize(1);
ElseClauseTree elseClause = tree.elseClause();
assertThat(elseClause).isNotNull();
assertThat(elseClause.is(Kind.ELSE_CLAUSE)).isTrue();
assertThat(elseClause.statements()).hasSize(1);
assertThat(tree.elseifClauses()).hasSize(0);
assertThat(tree.colonToken()).isNull();
assertThat(tree.endifToken()).isNull();
assertThat(tree.eosToken()).isNull();
}
#location 11
#vulnerability type NULL_DEREFERENCE | #fixed code
@Test
public void standard_syntax() throws Exception {
IfStatementTree tree = parse("if ($a) {}", PHPLexicalGrammar.IF_STATEMENT);
assertThat(tree.ifToken().text()).isEqualTo("if");
assertThat(expressionToString(tree.condition())).isEqualTo("($a)");
assertThat(tree.statements()).hasSize(1);
assertThat(tree.elseClause()).isNull();
assertThat(tree.elseifClauses()).hasSize(0);
assertThat(tree.endifToken()).isNull();
assertThat(tree.eosToken()).isNull();
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void test_global_scope(Scope scope) {
assertThat(globalSymbolA.usages()).hasSize(4);
assertThat(globalSymbolB.usages()).hasSize(1);
Symbol arraySymbol = scope.getSymbol("$array");
assertThat(arraySymbol.usages()).hasSize(1);
assertThat(scope.getSymbol("$f").usages()).hasSize(1);
assertThat(scope.getSymbol("h").usages()).hasSize(1);
assertThat(scope.getSymbol("j").usages()).hasSize(1);
assertThat(scope.getSymbol("$compoundVar").usages()).hasSize(2);
assertThat(scope.getSymbol("$heredocVar").usages()).hasSize(2);
assertThat(scope.getSymbol("$var").usages()).hasSize(2);
Symbol classSymbol = scope.getSymbol("A");
assertThat(classSymbol).isNotNull();
assertThat(classSymbol.is(Kind.CLASS)).isTrue();
assertThat(classSymbol.usages()).hasSize(2);
}
#location 6
#vulnerability type NULL_DEREFERENCE | #fixed code
private void test_global_scope(Scope scope) {
assertThat(globalSymbolA.usages()).hasSize(4);
assertThat(globalSymbolB.usages()).hasSize(1);
Symbol arraySymbol = scope.getSymbol("$array");
assertThat(arraySymbol.usages()).hasSize(1);
assertThat(scope.getSymbol("$f").usages()).hasSize(1);
assertThat(scope.getSymbol("h").usages()).hasSize(1);
assertThat(scope.getSymbol("j").usages()).hasSize(1);
assertThat(scope.getSymbol("$compoundVar").usages()).hasSize(2);
assertThat(scope.getSymbol("$heredocVar").usages()).hasSize(2);
assertThat(scope.getSymbol("$var").usages()).hasSize(2);
Symbol classSymbol = scope.getSymbol("A");
assertThat(classSymbol).isNotNull();
assertThat(classSymbol.is(Kind.CLASS)).isTrue();
assertThat(classSymbol.usages()).hasSize(3);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void execute() {
try {
// Gets the tool command line
List<String> commandLine = getCommandLine();
ProcessBuilder builder = new ProcessBuilder(commandLine);
LOG.info("Executing " + getExecutedTool() + " with command '{}'", prettyPrint(commandLine));
// Starts the process
Process p = builder.start();
// And handles it's normal and error stream in separated threads.
ByteArrayOutputStream output = new ByteArrayOutputStream(DEFAUT_BUFFER_INITIAL_SIZE);
AsyncPipe outputStreamThread = new AsyncPipe(p.getInputStream(), output);
outputStreamThread.start();
ByteArrayOutputStream error = new ByteArrayOutputStream(DEFAUT_BUFFER_INITIAL_SIZE);
AsyncPipe errorStreamThread = new AsyncPipe(p.getErrorStream(), error);
errorStreamThread.start();
LOG.info(getExecutedTool() + " ended with returned code '{}'.", p.waitFor());
} catch (IOException e) {
LOG.error("Can't execute the external tool", e);
throw new PhpPluginExecutionException(e);
} catch (InterruptedException e) {
LOG.error("Async pipe interrupted: ", e);
throw new PhpPluginExecutionException(e);
}
}
#location 13
#vulnerability type RESOURCE_LEAK | #fixed code
public void execute() {
List<String> commandLine = getCommandLine();
LOG.info("Executing " + getExecutedTool() + " with command '{}'", prettyPrint(commandLine));
Iterator<String> commandLineIterator = commandLine.iterator();
Command command = Command.create(commandLineIterator.next());
while (commandLineIterator.hasNext()) {
command.addArgument(commandLineIterator.next());
}
int exitCode = CommandExecutor.create().execute(command, configuration.getTimeout() * MINUTES_TO_MILLISECONDS);
if ( !acceptedExitCodes.contains(exitCode)) {
throw new SonarException(getExecutedTool() + " execution failed with returned code '" + exitCode
+ "'. Please check the documentation of " + getExecutedTool() + " to know more about this failure.");
} else {
LOG.info(getExecutedTool() + " succeeded with returned code '{}'.", exitCode);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private static boolean isArgumentOfSafeFunctionCall(Tree tree) {
Tree parent = tree.getParent();
if (parent.is(Tree.Kind.FUNCTION_CALL)) {
FunctionCallTree functionCall = (FunctionCallTree) parent;
ExpressionTree callee = functionCall.callee();
if (callee.is(Tree.Kind.NAMESPACE_NAME)) {
String qualifiedName = ((NamespaceNameTree) callee).qualifiedName();
return SAFE_FUNCTIONS.stream().anyMatch(qualifiedName::equalsIgnoreCase);
}
}
return false;
}
#location 3
#vulnerability type NULL_DEREFERENCE | #fixed code
private static boolean isArgumentOfSafeFunctionCall(Tree tree) {
if (!tree.getParent().is(Tree.Kind.CALL_ARGUMENT) || !tree.getParent().getParent().is(Tree.Kind.FUNCTION_CALL)) {
return false;
}
FunctionCallTree functionCall = (FunctionCallTree) tree.getParent().getParent();
ExpressionTree callee = functionCall.callee();
if (callee.is(Tree.Kind.NAMESPACE_NAME)) {
String qualifiedName = ((NamespaceNameTree) callee).qualifiedName();
return SAFE_FUNCTIONS.stream().anyMatch(qualifiedName::equalsIgnoreCase);
}
return false;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void visitClassDeclaration(ClassDeclarationTree tree) {
stringLiterals.clear();
super.visitClassDeclaration(tree);
if (tree.is(Tree.Kind.CLASS_DECLARATION)) {
Scope classScope = context().symbolTable().getScopeFor(tree);
for (Symbol methodSymbol : classScope.getSymbols(Kind.FUNCTION)) {
boolean ruleConditions = methodSymbol.hasModifier("private") && methodSymbol.usages().isEmpty();
if (ruleConditions
&& !isConstructor(methodSymbol.declaration(), tree)
&& !isMagicMethod(methodSymbol.name())
&& !isUsedInStringLiteral(methodSymbol)) {
context().newIssue(this, methodSymbol.declaration(), String.format(MESSAGE, methodSymbol.name()));
}
}
}
}
#location 8
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void visitClassDeclaration(ClassDeclarationTree tree) {
stringLiterals.clear();
super.visitClassDeclaration(tree);
if (tree.is(Tree.Kind.CLASS_DECLARATION)) {
checkClass(tree);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static Map<ClassSymbolData, ClassSymbol> createSymbols(Set<ClassSymbolData> fileDeclarations, ProjectSymbolData projectSymbolData) {
Map<ClassSymbolData, ClassSymbolImpl> symbolsByData = new HashMap<>();
Map<ClassSymbolData, ClassSymbol> result = new HashMap<>();
Deque<ClassSymbolData> toComplete = new ArrayDeque<>();
Map<QualifiedName, ClassSymbolImpl> symbolsByQualifiedName = new HashMap<>();
fileDeclarations.forEach(data -> {
ClassSymbolImpl symbol = new ClassSymbolImpl(data.location(), data.qualifiedName());
result.put(data, symbol);
toComplete.push(data);
symbolsByQualifiedName.put(symbol.qualifiedName, symbol);
symbolsByData.put(data, symbol);
});
while (!toComplete.isEmpty()) {
ClassSymbolData data = toComplete.pop();
Optional<QualifiedName> superClassName = data.superClass();
if (superClassName.isPresent()) {
ClassSymbolImpl superClass = symbolsByQualifiedName.get(superClassName.get());
if (superClass == null) {
Optional<ClassSymbolData> superClassData = projectSymbolData.classSymbolData(superClassName.get());
if (superClassData.isPresent()) {
superClass = new ClassSymbolImpl(superClassData.get().location(), superClassName.get());
toComplete.push(superClassData.get());
symbolsByQualifiedName.put(superClassName.get(), superClass);
symbolsByData.put(superClassData.get(), superClass);
}
}
symbolsByData.get(data).superClass = superClass == null ? UnknownClassSymbol.UNKNOWN : superClass;
}
}
return result;
}
#location 28
#vulnerability type NULL_DEREFERENCE | #fixed code
public static Map<ClassSymbolData, ClassSymbol> createSymbols(Set<ClassSymbolData> fileDeclarations, ProjectSymbolData projectSymbolData) {
Map<ClassSymbolData, ClassSymbolImpl> symbolsByData = new HashMap<>();
Map<ClassSymbolData, ClassSymbol> result = new HashMap<>();
Deque<ClassSymbolData> toComplete = new ArrayDeque<>();
Map<QualifiedName, ClassSymbol> symbolsByQualifiedName = new HashMap<>();
fileDeclarations.forEach(data -> {
ClassSymbolImpl symbol = new ClassSymbolImpl(data.location(), data.qualifiedName());
result.put(data, symbol);
toComplete.push(data);
symbolsByQualifiedName.put(symbol.qualifiedName, symbol);
symbolsByData.put(data, symbol);
});
while (!toComplete.isEmpty()) {
ClassSymbolData data = toComplete.pop();
Optional<QualifiedName> superClassName = data.superClass();
if (superClassName.isPresent()) {
ClassSymbol superClass = symbolsByQualifiedName.get(superClassName.get());
if (superClass == null) {
Optional<ClassSymbolData> superClassData = projectSymbolData.classSymbolData(superClassName.get());
if (superClassData.isPresent()) {
ClassSymbolImpl knownSuperClass = new ClassSymbolImpl(superClassData.get().location(), superClassName.get());
toComplete.push(superClassData.get());
symbolsByData.put(superClassData.get(), knownSuperClass);
superClass = knownSuperClass;
} else {
superClass = new UnknownClassSymbol(superClassName.get());
}
symbolsByQualifiedName.put(superClassName.get(), superClass);
}
symbolsByData.get(data).superClass = superClass;
}
}
return result;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void checkCfg(ControlFlowGraph cfg) {
for (CfgBlock cfgBlock : cfg.blocks()) {
if (cfgBlock.successors().size() == 1 && cfgBlock.successors().contains(cfgBlock.syntacticSuccessor())) {
Tree lastElement = cfgBlock.elements().get(cfgBlock.elements().size() - 1);
if (lastElement.is(Kind.RETURN_STATEMENT) &&
(((ReturnStatementTree) lastElement).expression() != null ||
lastElement.getParent().is(Kind.CASE_CLAUSE, Kind.DEFAULT_CLAUSE))) {
continue;
}
if (lastElement.is(Kind.RETURN_STATEMENT, Kind.CONTINUE_STATEMENT, Kind.GOTO_STATEMENT)) {
context().newIssue(this, lastElement, MESSAGE);
}
}
}
}
#location 7
#vulnerability type NULL_DEREFERENCE | #fixed code
private void checkCfg(ControlFlowGraph cfg) {
for (CfgBlock cfgBlock : cfg.blocks()) {
if (cfgBlock.successors().size() == 1 && cfgBlock.successors().contains(cfgBlock.syntacticSuccessor())) {
Tree lastElement = Iterables.getLast(cfgBlock.elements());
if (isIgnoredReturn(lastElement)) {
continue;
}
if (lastElement.is(Kind.RETURN_STATEMENT, Kind.CONTINUE_STATEMENT, Kind.GOTO_STATEMENT)) {
context().newIssue(this, lastElement, MESSAGE);
}
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void test() throws Exception {
IssueLocation issueLocation = new IssueLocation(TOKEN1, "Test message");
assertThat(issueLocation.message()).isEqualTo("Test message");
assertThat(issueLocation.startLine()).isEqualTo(5);
assertThat(issueLocation.startLineOffset()).isEqualTo(10);
assertThat(issueLocation.endLine()).isEqualTo(5);
assertThat(issueLocation.endLineOffset()).isEqualTo(16);
}
#location 8
#vulnerability type NULL_DEREFERENCE | #fixed code
@Test
public void test() throws Exception {
IssueLocation issueLocation = new IssueLocation(TOKEN1, "Test message");
assertThat(issueLocation.message()).isEqualTo("Test message");
assertThat(issueLocation.startLine()).isEqualTo(5);
assertThat(issueLocation.startLineOffset()).isEqualTo(10);
assertThat(issueLocation.endLine()).isEqualTo(5);
assertThat(issueLocation.endLineOffset()).isEqualTo(16);
assertThat(issueLocation.filePath()).isNull();
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void visitAssignmentExpression(AssignmentExpressionTree assignment) {
SyntaxToken lastToken = ((PHPTree) assignment.variable()).getLastToken();
String variableName = lastToken.text();
checkVariable(lastToken, variableName, assignment.value());
super.visitAssignmentExpression(assignment);
}
#location 4
#vulnerability type NULL_DEREFERENCE | #fixed code
@Override
public void visitAssignmentExpression(AssignmentExpressionTree assignment) {
checkVariable(((PHPTree) assignment.variable()).getLastToken(), assignment.value());
super.visitAssignmentExpression(assignment);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static Map<ClassSymbolData, ClassSymbol> createSymbols(Set<ClassSymbolData> fileDeclarations, ProjectSymbolData projectSymbolData) {
Map<ClassSymbolData, ClassSymbolImpl> symbolsByData = new HashMap<>();
Map<ClassSymbolData, ClassSymbol> result = new HashMap<>();
Deque<ClassSymbolData> toComplete = new ArrayDeque<>();
Map<QualifiedName, ClassSymbolImpl> symbolsByQualifiedName = new HashMap<>();
fileDeclarations.forEach(data -> {
ClassSymbolImpl symbol = new ClassSymbolImpl(data.qualifiedName());
result.put(data, symbol);
toComplete.push(data);
symbolsByQualifiedName.put(symbol.qualifiedName, symbol);
symbolsByData.put(data, symbol);
});
while (!toComplete.isEmpty()) {
ClassSymbolData data = toComplete.pop();
Optional<QualifiedName> superClassName = data.superClass();
if (superClassName.isPresent()) {
ClassSymbolImpl superClass = symbolsByQualifiedName.get(superClassName.get());
if (superClass == null) {
Optional<ClassSymbolData> superClassData = projectSymbolData.classSymbolData(superClassName.get());
if (superClassData.isPresent()) {
superClass = new ClassSymbolImpl(superClassName.get());
toComplete.push(superClassData.get());
symbolsByQualifiedName.put(superClassName.get(), superClass);
symbolsByData.put(superClassData.get(), superClass);
}
}
symbolsByData.get(data).superClass = superClass == null ? UnknownClassSymbol.UNKNOWN : superClass;
}
}
return result;
}
#location 28
#vulnerability type NULL_DEREFERENCE | #fixed code
public static Map<ClassSymbolData, ClassSymbol> createSymbols(Set<ClassSymbolData> fileDeclarations, ProjectSymbolData projectSymbolData) {
Map<ClassSymbolData, ClassSymbolImpl> symbolsByData = new HashMap<>();
Map<ClassSymbolData, ClassSymbol> result = new HashMap<>();
Deque<ClassSymbolData> toComplete = new ArrayDeque<>();
Map<QualifiedName, ClassSymbolImpl> symbolsByQualifiedName = new HashMap<>();
fileDeclarations.forEach(data -> {
ClassSymbolImpl symbol = new ClassSymbolImpl(data.location(), data.qualifiedName());
result.put(data, symbol);
toComplete.push(data);
symbolsByQualifiedName.put(symbol.qualifiedName, symbol);
symbolsByData.put(data, symbol);
});
while (!toComplete.isEmpty()) {
ClassSymbolData data = toComplete.pop();
Optional<QualifiedName> superClassName = data.superClass();
if (superClassName.isPresent()) {
ClassSymbolImpl superClass = symbolsByQualifiedName.get(superClassName.get());
if (superClass == null) {
Optional<ClassSymbolData> superClassData = projectSymbolData.classSymbolData(superClassName.get());
if (superClassData.isPresent()) {
superClass = new ClassSymbolImpl(superClassData.get().location(), superClassName.get());
toComplete.push(superClassData.get());
symbolsByQualifiedName.put(superClassName.get(), superClass);
symbolsByData.put(superClassData.get(), superClass);
}
}
symbolsByData.get(data).superClass = superClass == null ? UnknownClassSymbol.UNKNOWN : superClass;
}
}
return result;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void execute() {
try {
// Gets the tool command line
List<String> commandLine = getCommandLine();
ProcessBuilder builder = new ProcessBuilder(commandLine);
LOG.info("Executing " + getExecutedTool() + " with command '{}'", prettyPrint(commandLine));
// Starts the process
Process p = builder.start();
// And handles it's normal and error stream in separated threads.
ByteArrayOutputStream output = new ByteArrayOutputStream(DEFAUT_BUFFER_INITIAL_SIZE);
AsyncPipe outputStreamThread = new AsyncPipe(p.getInputStream(), output);
outputStreamThread.start();
ByteArrayOutputStream error = new ByteArrayOutputStream(DEFAUT_BUFFER_INITIAL_SIZE);
AsyncPipe errorStreamThread = new AsyncPipe(p.getErrorStream(), error);
errorStreamThread.start();
LOG.info(getExecutedTool() + " ended with returned code '{}'.", p.waitFor());
} catch (IOException e) {
LOG.error("Can't execute the external tool", e);
throw new PhpPluginExecutionException(e);
} catch (InterruptedException e) {
LOG.error("Async pipe interrupted: ", e);
throw new PhpPluginExecutionException(e);
}
}
#location 17
#vulnerability type RESOURCE_LEAK | #fixed code
public void execute() {
List<String> commandLine = getCommandLine();
LOG.info("Executing " + getExecutedTool() + " with command '{}'", prettyPrint(commandLine));
Iterator<String> commandLineIterator = commandLine.iterator();
Command command = Command.create(commandLineIterator.next());
while (commandLineIterator.hasNext()) {
command.addArgument(commandLineIterator.next());
}
int exitCode = CommandExecutor.create().execute(command, configuration.getTimeout() * MINUTES_TO_MILLISECONDS);
if ( !acceptedExitCodes.contains(exitCode)) {
throw new SonarException(getExecutedTool() + " execution failed with returned code '" + exitCode
+ "'. Please check the documentation of " + getExecutedTool() + " to know more about this failure.");
} else {
LOG.info(getExecutedTool() + " succeeded with returned code '{}'.", exitCode);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void createTemplateParameters(File outputDir, Template template, File templatesDir) throws MojoExecutionException {
JsonNodeFactory nodeFactory = JsonNodeFactory.instance;
ObjectNode values = nodeFactory.objectNode();
List<io.fabric8.openshift.api.model.Parameter> parameters = template.getParameters();
if (parameters == null && parameters.isEmpty()) {
return;
}
List<HelmParameter> helmParameters = new ArrayList<>();
for (io.fabric8.openshift.api.model.Parameter parameter : parameters) {
HelmParameter helmParameter = new HelmParameter(parameter);
helmParameter.addToValue(values);
helmParameters.add(helmParameter);
}
File outputChartFile = new File(outputDir, "values.yaml");
try {
saveYaml(values, outputChartFile);
} catch (IOException e) {
throw new MojoExecutionException("Failed to save chart values " + outputChartFile + ": " + e, e);
}
// now lets replace all the parameter expressions in each template
File[] files = templatesDir.listFiles();
if (files != null) {
for (File file : files) {
if (file.isFile()) {
String extension = Files.getExtension(file.getName()).toLowerCase();
if (extension.equals("yaml") || extension.equals("yml")) {
convertTemplateParameterExpressionsWithHelmExpressions(file, helmParameters);
}
}
}
}
}
#location 5
#vulnerability type NULL_DEREFERENCE | #fixed code
private void createTemplateParameters(File outputDir, Template template, File templatesDir) throws MojoExecutionException {
JsonNodeFactory nodeFactory = JsonNodeFactory.instance;
ObjectNode values = nodeFactory.objectNode();
List<io.fabric8.openshift.api.model.Parameter> parameters = template.getParameters();
if (parameters == null || parameters.isEmpty()) {
return;
}
List<HelmParameter> helmParameters = new ArrayList<>();
for (io.fabric8.openshift.api.model.Parameter parameter : parameters) {
HelmParameter helmParameter = new HelmParameter(parameter);
helmParameter.addToValue(values);
helmParameters.add(helmParameter);
}
File outputChartFile = new File(outputDir, "values.yaml");
try {
saveYaml(values, outputChartFile);
} catch (IOException e) {
throw new MojoExecutionException("Failed to save chart values " + outputChartFile + ": " + e, e);
}
// now lets replace all the parameter expressions in each template
File[] files = templatesDir.listFiles();
if (files != null) {
for (File file : files) {
if (file.isFile()) {
String extension = Files.getExtension(file.getName()).toLowerCase();
if (extension.equals("yaml") || extension.equals("yml")) {
convertTemplateParameterExpressionsWithHelmExpressions(file, helmParameters);
}
}
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private KubernetesList convertToOpenShiftResources(KubernetesList resources) throws MojoExecutionException {
KubernetesListBuilder builder = new KubernetesListBuilder();
builder.withMetadata(resources.getMetadata());
List<HasMetadata> items = resources.getItems();
List<HasMetadata> objects = new ArrayList<>();
if (items != null) {
for (HasMetadata item : items) {
if (item instanceof Deployment) {
// if we have a Deployment and a DeploymentConfig of the same name
// since we have a different manifest for OpenShift then lets filter out
// the Kubernetes specific Deployment
String name = KubernetesHelper.getName(item);
if (hasDeploymentConfigNamed(items, name)) {
continue;
}
}
HasMetadata converted = convertKubernetesItemToOpenShift(item);
if (converted != null) {
objects.add(converted);
}
}
}
openshiftDependencyResources.addMissingResources(objects);
if (openshiftManifest != null && openshiftManifest.isFile() && openshiftManifest.exists()) {
// lets add any ImageStream / ImageStreamTag objects which are already on disk
// from a previous `BuildMojo` execution
KubernetesClient client = clusterAccess.createDefaultClient(log);
Set<HasMetadata> oldEntities;
try {
oldEntities = KubernetesResourceUtil.loadResources(openshiftManifest);
} catch (Exception e) {
throw new MojoExecutionException("Failed to load openshift manifest " + openshiftManifest + ". " + e, e);
}
for (HasMetadata entity : oldEntities) {
if (entity instanceof ImageStream || entity instanceof ImageStreamTag) {
if (KubernetesResourceUtil.findResourceByName(objects, entity.getClass(), KubernetesHelper.getName(entity)) == null) {
objects.add(entity);
}
}
}
}
moveTemplatesToTopLevel(builder, objects);
return builder.build();
}
#location 29
#vulnerability type RESOURCE_LEAK | #fixed code
private KubernetesList convertToOpenShiftResources(KubernetesList resources) throws MojoExecutionException {
KubernetesListBuilder builder = new KubernetesListBuilder();
builder.withMetadata(resources.getMetadata());
List<HasMetadata> items = resources.getItems();
List<HasMetadata> objects = new ArrayList<>();
if (items != null) {
for (HasMetadata item : items) {
if (item instanceof Deployment) {
// if we have a Deployment and a DeploymentConfig of the same name
// since we have a different manifest for OpenShift then lets filter out
// the Kubernetes specific Deployment
String name = KubernetesHelper.getName(item);
if (hasDeploymentConfigNamed(items, name)) {
continue;
}
}
HasMetadata converted = convertKubernetesItemToOpenShift(item);
if (converted != null) {
objects.add(converted);
}
}
}
openshiftDependencyResources.addMissingResources(objects);
moveTemplatesToTopLevel(builder, objects);
// TODO: Remove this ASAP when https://github.com/fabric8io/fabric8-maven-plugin/issues/678 is fixed
removeInitContainers(builder, VolumePermissionEnricher.ENRICHER_NAME);
return builder.build();
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void addProfiledResourcesFromSubirectories(KubernetesListBuilder builder, File resourceDir, EnricherManager enricherManager) throws IOException, MojoExecutionException {
File[] profileDirs = resourceDir.listFiles(new FileFilter() {
@Override
public boolean accept(File pathname) {
return pathname.isDirectory();
}
});
for (File profileDir : profileDirs) {
Profile profile = ProfileUtil.findProfile(profileDir.getName(), resourceDir);
ProcessorConfig enricherConfig = profile.getEnricherConfig();
if (profile == null) {
throw new MojoExecutionException(String.format("Invalid profile '%s' given as directory in %s. " +
"Please either define a profile of this name or move this directory away",
profileDir.getName(), resourceDir));
}
File[] resourceFiles = KubernetesResourceUtil.listResourceFragments(profileDir);
if (resourceFiles.length > 0) {
KubernetesListBuilder profileBuilder = readResourceFragments(resourceFiles);
enricherManager.createDefaultResources(enricherConfig, profileBuilder);
enricherManager.enrich(enricherConfig, profileBuilder);
KubernetesList profileItems = profileBuilder.build();
for (HasMetadata item : profileItems.getItems()) {
builder.addToItems(item);
}
}
}
}
#location 10
#vulnerability type NULL_DEREFERENCE | #fixed code
private void addProfiledResourcesFromSubirectories(KubernetesListBuilder builder, File resourceDir, EnricherManager enricherManager) throws IOException, MojoExecutionException {
File[] profileDirs = resourceDir.listFiles(new FileFilter() {
@Override
public boolean accept(File pathname) {
return pathname.isDirectory();
}
});
for (File profileDir : profileDirs) {
Profile profile = ProfileUtil.findProfile(profileDir.getName(), resourceDir);
if (profile == null) {
throw new MojoExecutionException(String.format("Invalid profile '%s' given as directory in %s. " +
"Please either define a profile of this name or move this directory away",
profileDir.getName(), resourceDir));
}
ProcessorConfig enricherConfig = profile.getEnricherConfig();
File[] resourceFiles = KubernetesResourceUtil.listResourceFragments(profileDir);
if (resourceFiles.length > 0) {
KubernetesListBuilder profileBuilder = readResourceFragments(resourceFiles);
enricherManager.createDefaultResources(enricherConfig, profileBuilder);
enricherManager.enrich(enricherConfig, profileBuilder);
KubernetesList profileItems = profileBuilder.build();
for (HasMetadata item : profileItems.getItems()) {
builder.addToItems(item);
}
}
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void portForward(Controller controller, String podName) throws MojoExecutionException {
File file = getKubeCtlExecutable(controller);
String command = file.getName();
log.info("Port forwarding to port " + remoteDebugPort + " on pod " + podName + " using command: " + command);
String arguments = " port-forward " + podName + " " + localDebugPort + ":" + remoteDebugPort;
String commands = command + arguments;
log.info("Executing command: " + commands);
final String message = "port forward";
final Process process;
try {
process = Runtime.getRuntime().exec(file.getAbsolutePath() + arguments);
Runtime.getRuntime().addShutdownHook(new Thread("mvn fabric8:run-interactive shutdown hook") {
@Override
public void run() {
if (process != null) {
log.info("Terminating port forward process:");
try {
process.destroy();
} catch (Exception e) {
log.error("Failed to terminate process " + message);
}
try {
if (process != null && process.isAlive()) {
process.destroyForcibly();
}
} catch (Exception e) {
log.error("Failed to forcibly terminate process " + message);
}
}
}
});
log.info("");
log.info("Now you can start a Remote debug execution in your IDE by using localhost and the debug port " + localDebugPort);
log.info("");
processCommandAsync(process, createExternalProcessLogger("[[B]]" + command + "[[B]] "), commands, message);
} catch (Exception e) {
throw new MojoExecutionException("Failed to execute process " + commands + " for " +
message + ": " + e, e);
}
}
#location 38
#vulnerability type RESOURCE_LEAK | #fixed code
private void portForward(Controller controller, String podName) throws MojoExecutionException {
File command = getKubeCtlExecutable(controller);
log.info("Port forwarding to port " + remoteDebugPort + " on pod " + podName + " using command " + command);
List<String> args = new ArrayList<>();
args.add("port-forward");
args.add(podName);
args.add(localDebugPort + ":" + remoteDebugPort);
String commandLine = command + " " + Strings.join(args, " ");
log.verbose("Executing command " + commandLine);
try {
log.info("");
log.info("Now you can start a Remote debug execution in your IDE by using localhost and the debug port " + localDebugPort);
log.info("");
ProcessUtil.runCommand(createExternalProcessLogger("[[B]]" + command.getName() + "[[B]] "), command, args, true);
} catch (Exception e) {
throw new MojoExecutionException("Failed to start port forwarding with " + commandLine + ": " + e, e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void execute() throws MojoExecutionException, MojoFailureException {
File manifest = kubernetesManifest;
if (!Files.isFile(manifest)) {
if (failOnNoKubernetesJson) {
throw new MojoFailureException("No such generated kubernetes YAML file: " + manifest);
} else {
getLog().warn("No such generated kubernetes YAML file: " + manifest + " for this project so ignoring");
return;
}
}
KubernetesClient kubernetes = createKubernetesClient();
if (kubernetes.getMasterUrl() == null || Strings.isNullOrBlank(kubernetes.getMasterUrl().toString())) {
throw new MojoFailureException("Cannot find Kubernetes master URL");
}
getLog().info("Using kubernetes at: " + kubernetes.getMasterUrl() + " in namespace " + getNamespace() + " Kubernetes manifest: " + manifest);
try {
Controller controller = createController();
controller.setAllowCreate(createNewResources);
controller.setServicesOnlyMode(servicesOnly);
controller.setIgnoreServiceMode(ignoreServices);
controller.setLogJsonDir(jsonLogDir);
controller.setBasedir(getRootProjectFolder());
controller.setIgnoreRunningOAuthClients(ignoreRunningOAuthClients);
controller.setProcessTemplatesLocally(processTemplatesLocally);
controller.setDeletePodsOnReplicationControllerUpdate(deletePodsOnReplicationControllerUpdate);
controller.setRollingUpgrade(rollingUpgrades);
controller.setRollingUpgradePreserveScale(isRollingUpgradePreserveScale());
boolean openShift = KubernetesHelper.isOpenShift(kubernetes);
if (openShift) {
getLog().info("OpenShift platform detected");
} else {
disableOpenShiftFeatures(controller);
}
String fileName = manifest.getName();
Object dto = KubernetesHelper.loadYaml(manifest, KubernetesResource.class);
if (dto == null) {
throw new MojoFailureException("Cannot load kubernetes YAML: " + manifest);
}
// lets check we have created the namespace
String namespace = getNamespace();
controller.applyNamespace(namespace);
controller.setNamespace(namespace);
if (dto instanceof Template) {
Template template = (Template) dto;
dto = applyTemplates(template, kubernetes, controller, fileName);
}
Set<KubernetesResource> resources = new LinkedHashSet<>();
Set<HasMetadata> entities = new TreeSet<>(new HasMetadataComparator());
for (KubernetesResource resource : resources) {
entities.addAll(KubernetesHelper.toItemList(resource));
}
entities.addAll(KubernetesHelper.toItemList(dto));
if (createExternalUrls) {
if (controller.getOpenShiftClientOrNull() != null) {
createRoutes(controller, entities);
} else {
createIngress(controller, kubernetes, entities);
}
}
// Apply all items
for (HasMetadata entity : entities) {
if (entity instanceof Pod) {
Pod pod = (Pod) entity;
controller.applyPod(pod, fileName);
} else if (entity instanceof Service) {
Service service = (Service) entity;
controller.applyService(service, fileName);
} else if (entity instanceof ReplicationController) {
ReplicationController replicationController = (ReplicationController) entity;
controller.applyReplicationController(replicationController, fileName);
} else if (entity != null) {
controller.apply(entity, fileName);
}
}
} catch (Exception e) {
throw new MojoExecutionException(e.getMessage(), e);
}
}
#location 14
#vulnerability type RESOURCE_LEAK | #fixed code
@Override
public void execute() throws MojoExecutionException, MojoFailureException {
KubernetesClient kubernetes = createKubernetesClient();
File manifest;
String clusterKind = "Kubernetes";
if (KubernetesHelper.isOpenShift(kubernetes)) {
manifest = openshiftManifest;
clusterKind = "OpenShift";
} else {
manifest = kubernetesManifest;
}
if (!Files.isFile(manifest)) {
if (failOnNoKubernetesJson) {
throw new MojoFailureException("No such generated manifest file: " + manifest);
} else {
getLog().warn("No such generated manifest file: " + manifest + " for this project so ignoring");
return;
}
}
if (kubernetes.getMasterUrl() == null || Strings.isNullOrBlank(kubernetes.getMasterUrl().toString())) {
throw new MojoFailureException("Cannot find Kubernetes master URL");
}
log.info("Using " + clusterKind +" at: " + kubernetes.getMasterUrl() + " in namespace " + getNamespace() + " with manifest: " + manifest);
try {
Controller controller = createController();
controller.setAllowCreate(createNewResources);
controller.setServicesOnlyMode(servicesOnly);
controller.setIgnoreServiceMode(ignoreServices);
controller.setLogJsonDir(jsonLogDir);
controller.setBasedir(getRootProjectFolder());
controller.setIgnoreRunningOAuthClients(ignoreRunningOAuthClients);
controller.setProcessTemplatesLocally(processTemplatesLocally);
controller.setDeletePodsOnReplicationControllerUpdate(deletePodsOnReplicationControllerUpdate);
controller.setRollingUpgrade(rollingUpgrades);
controller.setRollingUpgradePreserveScale(isRollingUpgradePreserveScale());
boolean openShift = KubernetesHelper.isOpenShift(kubernetes);
if (openShift) {
getLog().info("OpenShift platform detected");
} else {
disableOpenShiftFeatures(controller);
}
String fileName = manifest.getName();
Object dto = KubernetesHelper.loadYaml(manifest, KubernetesResource.class);
if (dto == null) {
throw new MojoFailureException("Cannot load kubernetes YAML: " + manifest);
}
// lets check we have created the namespace
String namespace = getNamespace();
controller.applyNamespace(namespace);
controller.setNamespace(namespace);
if (dto instanceof Template) {
Template template = (Template) dto;
dto = applyTemplates(template, kubernetes, controller, fileName);
}
Set<KubernetesResource> resources = new LinkedHashSet<>();
Set<HasMetadata> entities = new TreeSet<>(new HasMetadataComparator());
for (KubernetesResource resource : resources) {
entities.addAll(KubernetesHelper.toItemList(resource));
}
entities.addAll(KubernetesHelper.toItemList(dto));
if (createExternalUrls) {
if (controller.getOpenShiftClientOrNull() != null) {
createRoutes(controller, entities);
} else {
createIngress(controller, kubernetes, entities);
}
}
// Apply all items
for (HasMetadata entity : entities) {
if (entity instanceof Pod) {
Pod pod = (Pod) entity;
controller.applyPod(pod, fileName);
} else if (entity instanceof Service) {
Service service = (Service) entity;
controller.applyService(service, fileName);
} else if (entity instanceof ReplicationController) {
ReplicationController replicationController = (ReplicationController) entity;
controller.applyReplicationController(replicationController, fileName);
} else if (entity != null) {
controller.apply(entity, fileName);
}
}
} catch (Exception e) {
throw new MojoExecutionException(e.getMessage(), e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private KubernetesList convertToOpenShiftResources(KubernetesList resources) throws MojoExecutionException {
KubernetesListBuilder builder = new KubernetesListBuilder();
builder.withMetadata(resources.getMetadata());
List<HasMetadata> items = resources.getItems();
List<HasMetadata> objects = new ArrayList<>();
if (items != null) {
for (HasMetadata item : items) {
if (item instanceof Deployment) {
// if we have a Deployment and a DeploymentConfig of the same name
// since we have a different manifest for OpenShift then lets filter out
// the Kubernetes specific Deployment
String name = KubernetesHelper.getName(item);
if (hasDeploymentConfigNamed(items, name)) {
continue;
}
}
HasMetadata converted = convertKubernetesItemToOpenShift(item);
if (converted != null) {
objects.add(converted);
}
}
}
openshiftDependencyResources.addMissingResources(objects);
if (openshiftManifest != null && openshiftManifest.isFile() && openshiftManifest.exists()) {
// lets add any ImageStream / ImageStreamTag objects which are already on disk
// from a previous `BuildMojo` execution
KubernetesClient client = clusterAccess.createDefaultClient(log);
Set<HasMetadata> oldEntities;
try {
oldEntities = KubernetesResourceUtil.loadResources(openshiftManifest);
} catch (Exception e) {
throw new MojoExecutionException("Failed to load openshift manifest " + openshiftManifest + ". " + e, e);
}
for (HasMetadata entity : oldEntities) {
if (entity instanceof ImageStream || entity instanceof ImageStreamTag) {
if (KubernetesResourceUtil.findResourceByName(objects, entity.getClass(), KubernetesHelper.getName(entity)) == null) {
objects.add(entity);
}
}
}
}
moveTemplatesToTopLevel(builder, objects);
return builder.build();
}
#location 29
#vulnerability type RESOURCE_LEAK | #fixed code
private KubernetesList convertToOpenShiftResources(KubernetesList resources) throws MojoExecutionException {
KubernetesListBuilder builder = new KubernetesListBuilder();
builder.withMetadata(resources.getMetadata());
List<HasMetadata> items = resources.getItems();
List<HasMetadata> objects = new ArrayList<>();
if (items != null) {
for (HasMetadata item : items) {
if (item instanceof Deployment) {
// if we have a Deployment and a DeploymentConfig of the same name
// since we have a different manifest for OpenShift then lets filter out
// the Kubernetes specific Deployment
String name = KubernetesHelper.getName(item);
if (hasDeploymentConfigNamed(items, name)) {
continue;
}
}
HasMetadata converted = convertKubernetesItemToOpenShift(item);
if (converted != null) {
objects.add(converted);
}
}
}
openshiftDependencyResources.addMissingResources(objects);
moveTemplatesToTopLevel(builder, objects);
// TODO: Remove this ASAP when https://github.com/fabric8io/fabric8-maven-plugin/issues/678 is fixed
removeInitContainers(builder, VolumePermissionEnricher.ENRICHER_NAME);
return builder.build();
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void downloadGoFabric8(File destFile) throws MojoExecutionException {
File file = null;
try {
file = File.createTempFile("fabric8", ".bin");
} catch (IOException e) {
throw new MojoExecutionException("Failed to create a temporary file for the download");
}
log.debug("Downloading gofabric8 to temporary file: " + file.getAbsolutePath());
String version;
try {
version = IOHelpers.readFully(new URL(gofabric8VersionURL));
log.info("Downloading version " + version + " of gofabric8 to " + destFile + " ...");
} catch (IOException e) {
throw new MojoExecutionException("Failed to load gofabric8 version from: " + gofabric8VersionURL + ". " + e, e);
}
String platform = getPlatform();
String osArch = System.getProperty("os.arch");
String arch = Architectures.AMD64;
if (osArch.toLowerCase().contains("arm")) {
arch = Architectures.ARM;
}
String releaseUrl = "https://github.com/fabric8io/gofabric8/releases/download/v" + version + "/gofabric8-" + platform + "-" + arch;
if (platform.equals("windows")) {
releaseUrl += ".exe";
}
URL downloadUrl;
try {
downloadUrl = new URL(releaseUrl);
} catch (MalformedURLException e) {
throw new MojoExecutionException("Failed to create URL: " + releaseUrl + ". " + e, e);
}
InputStream inputStream;
try {
inputStream = downloadUrl.openStream();
} catch (IOException e) {
throw new MojoExecutionException("Failed to open URL: " + releaseUrl + ". " + e, e);
}
try (OutputStream out = new FileOutputStream(file)) {
IOHelpers.copy(inputStream, out);
} catch (IOException e) {
throw new MojoExecutionException("Failed to download URL: " + releaseUrl + " to file: " + file + ". " + e, e);
}
file.setExecutable(true);
// TODO: Very checksum and potentially signature
// lets check we can execute the binary before we try to replace it if it already exists
runCommand(file.getAbsolutePath() + " version" + batchModeArgument, "gofabric8 version" + batchModeArgument, "gofabric8");
boolean result = file.renameTo(destFile);
if (!result) {
// lets try copy it instead as this could be an odd linux issue with renaming files
try {
IOHelpers.copy(new FileInputStream(file), new FileOutputStream(destFile));
destFile.setExecutable(true);
} catch (IOException e) {
throw new MojoExecutionException("Failed to copy temporary file " + file + " to " + destFile + ": " + e, e);
}
}
log.info("Downloaded gofabric8 version " + version + " platform: " + platform + " arch:" + arch + " on: " + System.getProperty("os.name") + " " + arch + " to: " + destFile);
}
#location 21
#vulnerability type NULL_DEREFERENCE | #fixed code
protected void downloadGoFabric8(File destFile) throws MojoExecutionException {
// Download to a temporary file
File tempFile = downloadToTempFile();
// Move into it's destination place in ~/.fabric8/bin
moveGofabric8InPlace(tempFile, destFile);
// Make some noise
runGofabric8(destFile + " version");
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public Probe getProbe(ProbeConfig probeConfig) {
if (probeConfig == null) {
return null;
}
Probe probe = new Probe();
Integer initialDelaySeconds = probeConfig.getInitialDelaySeconds();
if (initialDelaySeconds != null) {
probe.setInitialDelaySeconds(initialDelaySeconds);
}
Integer timeoutSeconds = probeConfig.getTimeoutSeconds();
if (timeoutSeconds != null) {
probe.setTimeoutSeconds(timeoutSeconds);
}
HTTPGetAction getAction = getHTTPGetAction(probeConfig.getGetUrl());
if(StringUtils.isEmpty(getAction.getHost())) {
getAction.setHost(null);
}
if (getAction != null) {
probe.setHttpGet(getAction);
return probe;
}
ExecAction execAction = getExecAction(probeConfig.getExec());
if (execAction != null) {
probe.setExec(execAction);
return probe;
}
TCPSocketAction tcpSocketAction = getTCPSocketAction(probeConfig.getTcpPort());
if (tcpSocketAction != null) {
probe.setTcpSocket(tcpSocketAction);
return probe;
}
return null;
}
#location 16
#vulnerability type NULL_DEREFERENCE | #fixed code
public Probe getProbe(ProbeConfig probeConfig) {
if (probeConfig == null) {
return null;
}
Probe probe = new Probe();
Integer initialDelaySeconds = probeConfig.getInitialDelaySeconds();
if (initialDelaySeconds != null) {
probe.setInitialDelaySeconds(initialDelaySeconds);
}
Integer timeoutSeconds = probeConfig.getTimeoutSeconds();
if (timeoutSeconds != null) {
probe.setTimeoutSeconds(timeoutSeconds);
}
HTTPGetAction getAction = getHTTPGetAction(probeConfig.getGetUrl());
if (getAction != null) {
probe.setHttpGet(getAction);
return probe;
}
ExecAction execAction = getExecAction(probeConfig.getExec());
if (execAction != null) {
probe.setExec(execAction);
return probe;
}
TCPSocketAction tcpSocketAction = getTCPSocketAction(probeConfig.getTcpPort());
if (tcpSocketAction != null) {
probe.setTcpSocket(tcpSocketAction);
return probe;
}
return null;
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void portForward(Controller controller, String podName) throws MojoExecutionException {
try {
getFabric8ServiceHub().getPortForwardService()
.forwardPort(controller, createExternalProcessLogger("[[B]]port-forward[[B]] "), podName, portToInt(remoteDebugPort, "remoteDebugPort"), portToInt(localDebugPort, "localDebugPort"));
log.info("");
log.info("Now you can start a Remote debug execution in your IDE by using localhost and the debug port " + localDebugPort);
log.info("");
} catch (Fabric8ServiceException e) {
throw new MojoExecutionException("Failed to start port forwarding" + e, e);
}
}
#location 3
#vulnerability type RESOURCE_LEAK | #fixed code
private void portForward(Controller controller, String podName) throws MojoExecutionException {
try {
getFabric8ServiceHub(controller).getPortForwardService()
.forwardPort(createExternalProcessLogger("[[B]]port-forward[[B]] "), podName, portToInt(remoteDebugPort, "remoteDebugPort"), portToInt(localDebugPort, "localDebugPort"));
log.info("");
log.info("Now you can start a Remote debug execution in your IDE by using localhost and the debug port " + localDebugPort);
log.info("");
} catch (Fabric8ServiceException e) {
throw new MojoExecutionException("Failed to start port forwarding" + e, e);
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
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