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Functional characterization of cell-wall-associated protein WapA in Streptococcus mutans. | Streptococcus mutans is known as a primary pathogen responsible for dental caries. One of the virulence factors of S. mutans in cariogenicity is its ability to attach to the tooth surface and form a biofilm. Several surface proteins have been shown to be involved in this process. A 29 kDa surface protein named wall-associated protein A (WapA; antigen A or antigen III); was previously used as a vaccine in animal studies for immunization against dental caries. However; the function of WapA in S. mutans is sti | 16849803 | [
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Functional characterization of cell-wall-associated protein WapA in Streptococcus mutans. | ll not clear. This study characterized the function of WapA in cell surface structure and biofilm formation. Compared to the wild-type; the wapA mutant had much-reduced cell chain length; diminished cell-cell aggregation; altered cell surface ultrastructure; and unstructured biofilm architecture. Furthermore; in vivo force spectroscopy revealed that the cell surface of the wapA mutant was less sticky than that of the wild-type cells. More interestingly; these phenotypic differences diminished as sucrose con | 16849803 | [
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Functional characterization of cell-wall-associated protein WapA in Streptococcus mutans. | centration in the medium was increased to 0.5 %. Real-time RT-PCR analysis demonstrated that sucrose strongly repressed wapA gene expression in both planktonic and biofilm cells. These results suggest that the WapA protein plays an important structural role on the cell surface; which ultimately affects sucrose-independent cell-cell aggregation and biofilm architecture. | 16849803 | [
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Interaction and localization studies of enteropathogenic Escherichia coli type IV bundle-forming pilus outer membrane components. | Typical enteropathogenic Escherichia coli strains express an established virulence factor belonging to the type IV pili family; called the bundle-forming pilus (BFP). BFP are present on the cell surface as bundled filamentous appendages; and are assembled and retracted by proteins encoded by the bfp operon. These proteins assemble to form a molecular machine. The BFP machine may be conceptually divided into three components: the cytoplasmic membrane (CM) subassembly; which is composed of CM proteins and cyt | 16849804 | [
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Interaction and localization studies of enteropathogenic Escherichia coli type IV bundle-forming pilus outer membrane components. | oplasmic nucleotide-binding proteins; the outer membrane (OM) subassembly and the pilus itself. The authors have previously characterized the CM subassembly and the pilus. In this study; a more complete characterization of the OM subassembly was carried out using a combination of biochemical; biophysical and genetic approaches. It is reported that targeting of BfpG to the OM was influenced by the secretin BfpB. BfpG and BfpU interacted with the amino terminus of BfpB. BfpU had a complex cellular distributio | 16849804 | [
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Indole-3-acetic acid regulates the central metabolic pathways in Escherichia coli. | The physiological changes induced by indoleacetic acid (IAA) treatment were investigated in the totally sequenced Escherichia coli K-12 MG1655. DNA macroarrays were used to measure the mRNA levels for all the 4290 E. coli protein-coding genes; 50 genes (1.1 %) exhibited significantly different expression profiles. In particular; genes involved in the tricarboxylic acid cycle; the glyoxylate shunt and amino acid biosynthesis (leucine; isoleucine; valine and proline) were up-regulated; whereas the fermentativ | 16849805 | [
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Indole-3-acetic acid regulates the central metabolic pathways in Escherichia coli. | e adhE gene was down-regulated. To confirm the indications obtained from the macroarray analysis the activity of 34 enzymes involved in central metabolism was measured; this showed an activation of the tricarboxylic acid cycle and the glyoxylate shunt. The malic enzyme; involved in the production of pyruvate; and pyruvate dehydrogenase; required for the channelling of pyruvate into acetyl-CoA; were also induced in IAA-treated cells. Moreover; it was shown that the enhanced production of acetyl-CoA and the d | 16849805 | [
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Indole-3-acetic acid regulates the central metabolic pathways in Escherichia coli. | ecrease of NADH/NAD+ ratio are connected with the molecular process of the IAA response. The results demonstrate that IAA treatment is a stimulus capable of inducing changes in gene expression; enzyme activity and metabolite level involved in central metabolic pathways in E. coli. | 16849805 | [
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Biosynthesis of the unusual 5,5-gem-dimethyl-deoxysugar noviose: investigation of the C-methyltransferase gene cloU. | The aminocoumarin antibiotic clorobiocin contains an unusual branched deoxysugar with a 5;5-gem-dimethyl structure. Inactivation of the putative C-methyltransferase gene cloU was carried out; which led to the loss of the axial methyl group at C-5 of this deoxysugar moiety. This result establishes the function of cloU; and at the same time it proves that the biosynthesis of the deoxysugar moiety of clorobiocin proceeds via a 3;5-epimerization of the dTDP-4-keto-6-deoxyglucose intermediate. The inactivation w | 16849806 | [
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Biosynthesis of the unusual 5,5-gem-dimethyl-deoxysugar noviose: investigation of the C-methyltransferase gene cloU. | as carried out on a cosmid which contained the entire clorobiocin biosynthetic gene cluster. Expression of the modified cluster in a heterologous host led to the formation of desmethyl-clorobiocin and a structural isomer thereof. Both compounds were isolated on a preparative scale; their structures were elucidated by 1H-NMR and mass spectroscopy and their antibacterial activity was assayed. | 16849806 | [
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Succinate dehydrogenase functioning by a reverse redox loop mechanism and fumarate reductase in sulphate-reducing bacteria. | Sulphate- or sulphur-reducing bacteria with known or draft genome sequences (Desulfovibrio vulgaris; Desulfovibrio desulfuricans G20; Desulfobacterium autotrophicum [draft]; Desulfotalea psychrophila and Geobacter sulfurreducens) all contain sdhCAB or frdCAB gene clusters encoding succinate : quinone oxidoreductases. frdD or sdhD genes are missing. The presence and function of succinate dehydrogenase versus fumarate reductase was studied. Desulfovibrio desulfuricans (strain Essex 6) grew by fumarate respira | 16849807 | [
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Succinate dehydrogenase functioning by a reverse redox loop mechanism and fumarate reductase in sulphate-reducing bacteria. | tion or by fumarate disproportionation; and contained fumarate reductase activity. Desulfovibrio vulgaris lacked fumarate respiration and contained succinate dehydrogenase activity. Succinate oxidation by the menaquinone analogue 2;3-dimethyl-1;4-naphthoquinone depended on a proton potential; and the activity was lost after degradation of the proton potential. The membrane anchor SdhC contains four conserved His residues which are known as the ligands for two haem B residues. The properties are very similar | 16849807 | [
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Succinate dehydrogenase functioning by a reverse redox loop mechanism and fumarate reductase in sulphate-reducing bacteria. | to succinate dehydrogenase of the Gram-positive (menaquinone-containing) Bacillus subtilis; which uses a reverse redox loop mechanism in succinate : menaquinone reduction. It is concluded that succinate dehydrogenases from menaquinone-containing bacteria generally require a proton potential to drive the endergonic succinate oxidation. Sequence comparison shows that the SdhC subunit of this type lacks a Glu residue in transmembrane helix IV; which is part of the uncoupling E-pathway in most non-electrogenic | 16849807 | [
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Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4. | Sphingomonas sp. strain A4 is capable of utilizing acenaphthene as its sole carbon and energy source. To isolate the genes responsible for acenaphthene degradation; transposon mutagenesis was performed on strain A4 and four mini-Tn5-inserted mutants lacking the ability to utilize acenaphthene were isolated. In three of the four mini-Tn5 inserted mutants; the mini-Tn5s were inserted into the same locus (within about 16 kb) as the arhA1A2 genes; which had previously been identified as the genes encoding the t | 16849808 | [
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Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4. | erminal oxygenase components for the initial oxygenation of acenaphthene. The nucleotide sequence analysis of the corresponding 16.4 kb DNA fragment revealed the existence of 16 ORFs and a partial ORF. From these ORFs; the genes encoding the ferredoxin (ArhA3) and ferredoxin reductase (ArhA4) complementary to ArhA1A2 were identified. RT-PCR analysis suggested that a 13.5 kb gene cluster; consisting of 13 ORFs and including all the arhA genes; forms an operon; although it includes several ORFs that are appar | 16849808 | [
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Functional and transcriptional analyses of the initial oxygenase genes for acenaphthene degradation from Sphingomonas sp. strain A4. | ently unnecessary for acenaphthene degradation. Furthermore; using gene disruption and quantitative RT-PCR analyses; the LysR-type activator; ArhR; required for expression of the 13.5 kb gene cluster was also identified. Transcription of the gene cluster by ArhR was induced in the presence of acenaphthene (or its metabolite); and a putative binding site (T-N11-A motif) for ArhR was found upstream from the transcription start point of arhA3. | 16849808 | [
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Deinococcus radiodurans engineered for complete toluene degradation facilitates Cr(VI) reduction. | Toluene and other fuel hydrocarbons are commonly found in association with radionuclides at numerous US Department of Energy sites; frequently occurring together with Cr(VI) and other heavy metals. In this study; the extremely radiation-resistant bacterium Deinococcus radiodurans; which naturally reduces Cr(VI) to the less mobile and less toxic Cr(III); was engineered for complete toluene degradation by cloned expression of tod and xyl genes of Pseudomonas putida. The recombinant Tod/Xyl strain showed incor | 16849809 | [
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Deinococcus radiodurans engineered for complete toluene degradation facilitates Cr(VI) reduction. | poration of carbon from 14C-labelled toluene into cellular macromolecules and carbon dioxide; in the absence or presence of chronic ionizing radiation. The engineered bacteria were able to oxidize toluene under both minimal and complex nutrient conditions; and recombinant cells reduced Cr(VI) in sediment microcosms. As such; the Tod/Xyl strain could provide a model for examining the reduction of metals coupled to organic contaminant oxidation in aerobic radionuclide-contaminated sediments. | 16849809 | [
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Interacting specificity of a histidine kinase and its cognate response regulator: the PrrBA system of Rhodobacter sphaeroides. | Using a yeast two-hybrid assay system; it was demonstrated that the four-helix bundle of the Rhodobacter sphaeroides PrrB histidine kinase both serves as the interaction site for the regulatory domain of its cognate response regulator PrrA and is the primary determinant of the interaction specificity. The alpha-helix 1 and its flanking turn region within the dimerization domain (DD) of the PrrB histidine kinase appear to play an important role in conferring the recognition specificity for the PrrA response | 16849810 | [
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Interacting specificity of a histidine kinase and its cognate response regulator: the PrrBA system of Rhodobacter sphaeroides. | regulator on the DD. The catalytic ATP-binding domain of the histidine kinase; which functions as the catalytic unit for the phosphotransfer reaction from ATP to the conserved histidine residue in the DD; also appears to contribute to the enhancement of the recognition specificity conferred by the DD. It was also revealed that replacement of Asp-63 and Lys-113 of the PrrA response regulator by alanine abolished protein-protein interactions between PrrA and its cognate histidine kinase PrrB; whereas mutation | 16849810 | [
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Interacting specificity of a histidine kinase and its cognate response regulator: the PrrBA system of Rhodobacter sphaeroides. | s of Asp-19; Asp-20 and Thr-87 to alanine did not affect protein-protein interactions; indicating that among the active site residues of PrrA; Asp-63 and Lys-113 are important not only in the function of PrrA but also for protein-protein interactions between PrrA and PrrB. | 16849810 | [
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Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of FtsI. | In Corynebacterium glutamicum; as in many Gram-positive bacteria; the cell division gene ftsI is located at the beginning of the dcw cluster; which comprises cell division- and cell wall-related genes. Transcriptional analysis of the cluster revealed that ftsI is transcribed as part of a polycistronic mRNA; which includes at least mraZ; mraW; ftsL; ftsI and murE; from a promoter that is located upstream of mraZ. ftsI appears also to be expressed from a minor promoter that is located in the intergenic ftsL-f | 16849811 | [
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Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of FtsI. | tsI region. It is an essential gene in C. glutamicum; and a reduced expression of ftsI leads to the formation of larger and filamentous cells. A translational GFP-FtsI fusion protein was found to be functional and localized to the mid-cell of a growing bacterium; providing evidence of its role in cell division in C. glutamicum. This study involving proteomic analysis (using 2D SDS-PAGE) of a C. glutamicum strain that has partially depleted levels of FtsI reveals that at least 20 different proteins were over | 16849811 | [
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Morphological changes and proteome response of Corynebacterium glutamicum to a partial depletion of FtsI. | expressed in the organism. Eight of these overexpressed proteins; which include DivIVA; were identified by MALDI-TOF. Overexpression of DivIVA was confirmed by Western blotting using anti-DivIVA antibodies; and also by fluorescence microscopy analysis of a C. glutamicum RESF1 strain expressing a chromosomal copy of a divIVA-gfp transcriptional fusion. Overexpression of DivIVA was not observed when FtsI was inhibited by cephalexin treatment or by partial depletion of FtsZ. | 16849811 | [
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Total respiratory tract deposition of fine micrometer-sized particles in healthy adults: empirical equations for sex and breathing pattern. | Accurate dose estimation under various inhalation conditions is important for assessing both the potential health effects of pollutant particles and the therapeutic efficacy of medicinal aerosols. We measured total deposition fraction (TDF) of monodisperse micrometer-sized particles [particle diameter (Dp) = 1; 3; and 5 microm in diameter] in healthy adults (8 men and 7 women) in a wide range of breathing patterns; tidal volumes (Vt) of 350-1500 ml and respiratory flow rates (Q) of 175-1;000 ml/s. The subje | 16849812 | [
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Total respiratory tract deposition of fine micrometer-sized particles in healthy adults: empirical equations for sex and breathing pattern. | ct inhaled test aerosols for 10-20 breaths with each of the prescribed breathing patterns; and TDF was obtained by monitoring inhaled and exhaled aerosols breath by breath by a laser aerosol photometer. Results show that TDF varied from 0.12-0.25; 0.26-0.68; and 0.45-0.83 for Dp = 1; 3; and 5 microm; respectively; depending on the breathing pattern used. TDF was comparable between men and women for Dp = 1 microm but was greater in women than men for Dp = 3 and 5 microm for all breathing patterns used (P < 0 | 16849812 | [
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Total respiratory tract deposition of fine micrometer-sized particles in healthy adults: empirical equations for sex and breathing pattern. | .05). TDF increased with an increase in Vt regardless of Dp and Q used. At a fixed Vt TDF decreased with an increase in Q for Dp = 1 and 3 microm but did not show any significant changes for Dp = 5 microm. The varying TDF values; however; could be consolidated by a single composite parameter (omega) consisting of Dp; Vt; and Q. The results indicate that unifying empirical formulas provide a convenient means of assessing deposition dose of particles under varying inhalation conditions. | 16849812 | [
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Continuous cardiac output monitoring in humans by invasive and noninvasive peripheral blood pressure waveform analysis. | We present an evaluation of a novel technique for continuous (i.e.; automatic) monitoring of relative cardiac output (CO) changes by long time interval analysis of a peripheral arterial blood pressure (ABP) waveform in humans. We specifically tested the mathematical analysis technique based on existing invasive and noninvasive hemodynamic data sets. With the former data set; we compared the application of the technique to peripheral ABP waveforms obtained via radial artery catheterization with simultaneous | 16849813 | [
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Continuous cardiac output monitoring in humans by invasive and noninvasive peripheral blood pressure waveform analysis. | thermodilution CO measurements in 15 intensive care unit patients in which CO was changing because of disease progression and therapy. With the latter data set; we compared the application of the technique to noninvasive peripheral ABP waveforms obtained via a finger-cuff photoplethysmography system with simultaneous Doppler ultrasound CO measurements made by an expert in 10 healthy subjects during pharmacological and postural interventions. We report an overall CO root-mean-squared normalized error of 15.3 | 16849813 | [
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Continuous cardiac output monitoring in humans by invasive and noninvasive peripheral blood pressure waveform analysis. | % with respect to the invasive hemodynamic data set and 15.1% with respect to the noninvasive hemodynamic data set. Moreover; the CO errors from the invasive and noninvasive hemodynamic data sets were only mildly correlated with mean ABP (rho = 0.41; 0.37) and even less correlated with CO (rho = -0.14; -0.17); heart rate (rho = 0.04; 0.19); total peripheral resistance (rho = 0.38; 0.10); CO changes (rho = -0.26; -0.20); and absolute CO changes (rho = 0.03; 0.38). With further development and successful pros | 16849813 | [
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Continuous cardiac output monitoring in humans by invasive and noninvasive peripheral blood pressure waveform analysis. | pective testing; the technique may potentially be employed for continuous hemodynamic monitoring in the acute setting such as critical care and emergency care. | 16849813 | [
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Cardiovascular variability is/is not an index of autonomic control of circulation. | nan | 16849814 | [
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Iron overload enhances epithelial cell proliferation in endometriotic lesions induced in a murine model. | Iron deposits are characteristic of endometriotic lesions; and pelvic iron concentrations are higher in endometriosis patients than in women without endometriosis. In this study; the effect of iron overload and iron chelation on the development of endometriosis in a murine model was investigated.Human menstrual endometrium was injected i.p. into nude mice; either alone (controls) or supplemented with erythrocytes or desferrioxamine (DFO); an iron chelator. After 5 days; the iron load of endometriosis-like l | 16849816 | [
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Iron overload enhances epithelial cell proliferation in endometriotic lesions induced in a murine model. | esions and peritoneal macrophages and fluid was evaluated. Lesions were quantified by immunohistochemical morphometry; and their proliferative activity was assessed.Injection of erythrocytes into the pelvic cavity caused iron overload in lesions (P < 0.025) and peritoneal macrophages (P < 0.01) and fluid (P < 0.05); whereas DFO effectively reduced iron status in lesions (P < 0.05) and macrophages (P < 0.01) compared with controls. No difference was observed in the number or surface area of lesions between t | 16849816 | [
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Iron overload enhances epithelial cell proliferation in endometriotic lesions induced in a murine model. | he three groups. Erythrocytes increased (P < 0.05) and DFO significantly decreased (P < 0.01) the proliferative activity of lesions.Iron overload does not appear to affect lesion establishment but may contribute to the further growth of endometriosis by promoting cell proliferation of lesions. Iron chelator treatment could therefore be beneficial in endometriosis to prevent iron overload in the pelvic cavity and decrease cellular proliferation of lesions. | 16849816 | [
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Ovarian tissue cryopreservation and transplantation: a review. | The review covers current options for ovarian tissue cryopreservation and transplantation and provides a systematic review of the existing literature from the last 10 years; taking into account all previously published reviews on the subject. The different cryopreservation options available for fertility preservation in cancer patients are embryo cryopreservation; oocyte cryopreservation and ovarian tissue cryopreservation. The choice depends on various parameters: the type and timing of chemotherapy; the t | 16849817 | [
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Ovarian tissue cryopreservation and transplantation: a review. | ype of cancer; the patient's age and the partner status. The different options and their results are discussed; as well as their putative indications and efficacy. The review concludes that advances in reproductive technology have made fertility preservation techniques a real possibility for patients whose gonadal function is threatened by premature menopause; or by treatments such as radiotherapy; chemotherapy or surgical castration. | 16849817 | [
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Harold M. Frost, M.D., D.Sc. (hon) -- one man's association. | The author described how and when he first met Harold M. Frost; M.D.; that began a journey from the Henry Ford Hospital to the University of Utah and Sun Valley Hard TissueWorkshops that sequentially developed the technology of dynamic cancellous bone histomorphometry; the ever-evolving mechanostat hypothesis and the Utah Paradigm for Bone Physiology. | 16849819 | [
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One mechanostat or many? Modifications of the site-specific response of bone to mechanical loading by nature and nurture. | The concept of the mechanostat was not new in 1983; when Harold Frost coined the term to describe a mechanism by which bone responded to habitual exercise and changes in loading with structurally appropriate alterations in bone architecture. However; the word "mechanostat" has a meaning that is immediately apparent; and its adoption has led to a much wider appreciation of the process of functional adaptation by other scientists than those whose primary research focus is in the biology of adaptation. One pro | 16849820 | [
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One mechanostat or many? Modifications of the site-specific response of bone to mechanical loading by nature and nurture. | blem exists though: it is widely thought that in a single individual; there is a setting for the mechanostat; just as a single thermostat might set the temperature for a whole house; and this is reflected in the idea that bones throughout the skeleton require a specific strain magnitude for maintenance. Increases in loading above that threshold are expected to induce bone formation and a stiffer structure that then experiences again the habitual strain magnitude. Reductions in strain magnitude supposedly in | 16849820 | [
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One mechanostat or many? Modifications of the site-specific response of bone to mechanical loading by nature and nurture. | duce resorption to reduce tissue mass and architectural properties so that the lower loading restores habitual strain magnitude. That widely held belief of a single unifying number of strain is fundamentally flawed. The purpose of this article is to explain the real basis of the mechanostat; that the skeleton responds to a complex strain stimulus; made up of numerous different parameters; of which peak magnitude is only one; and that the strain stimulus is different in different parts of the skeleton; so th | 16849820 | [
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One mechanostat or many? Modifications of the site-specific response of bone to mechanical loading by nature and nurture. | ere is no universal number to describe a tissue strain magnitude that underlies the mechanostat's setting. Furthermore; males and females have different responses to loading; and those responses change in response to many factors including genetic constitution; age; concomitant disease; nutrient availability; and exposure to drugs or biochemicals. In summary then; there is not a single mechanostat controlling the skeleton of each of us. At a fundamental tissue level; small functional units of bone each have | 16849820 | [
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One mechanostat or many? Modifications of the site-specific response of bone to mechanical loading by nature and nurture. | their own multifactorial threshold target strain stimuli for a given set of dynamic modifying influences. Understanding the biology behind the way that each of these mechanostats functions independently is likely to have pervasive consequences on our ability to control bone mass by manipulation of loading; either directly through different exercise regimens; or in a targeted manner using tailored site and individual specific pharmaceuticals. | 16849820 | [
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Material matters: a mechanostat-based perspective on bone development in osteogenesis imperfecta and hypophosphatemic rickets. | This perspective paper presents a hypothesis that links abnormalities of bone material with densitometric findings in two congenital metabolic bone disorders; osteogenesis imperfecta type I (OI) and X-linked hypophosphatemic rickets (XLH). Analyses of iliac bone samples from OI patients have shown that material bone density is elevated and that the bone material is abnormally stiff in this disorder. Therefore; a given mechanical load on an OI bone will generate a smaller than normal deformation. This in tur | 16849823 | [
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Material matters: a mechanostat-based perspective on bone development in osteogenesis imperfecta and hypophosphatemic rickets. | n should lead osteocytes; the putative mechanosensing cells; to systematically underestimate the prevailing mechanical forces. According to the mechanostat model; bone strength should then be adapted to the underestimated mechanical loads; which means that bone architecture and mass remain below requirements. Available densitometric studies are in accordance with this hypothesis. In XLH; a mild mineralization defect persists despite treatment. This mineralization defect should lead to soft bone material. In | 16849823 | [
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Material matters: a mechanostat-based perspective on bone development in osteogenesis imperfecta and hypophosphatemic rickets. | analogy to the above model for OI; mechanical loads should be overestimated; resulting in increased densitometric parameters of bone strength. Indeed; lumbar spine areal bone mineral density is usually elevated in such patients. | 16849823 | [
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Influence of rapid growth on skeletal adaptation to exercise. | During rapid growth; increased body weight and muscle strength result in increased loads on bone. Bone adapts to these increased strains by increasing bone modeling and remodeling. As the growth rate decreases; bone that was formed as a result of these adaptations continues to mineralize and "catch up"; and bone modeling and remodeling decreases. Bone benefits of exercise in childhood are reported in some studies; although we observed less BMC gain at trabecular-rich sites during the peri-pubertal period in | 16849824 | [
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Influence of rapid growth on skeletal adaptation to exercise. | children who jumped than those who did not. Data from 13 existing pediatric exercise studies were compiled to determine whether similar patterns of age-related bone changes could be identified; and whether the bone benefit of exercise differed depending upon pubertal stage. The benefit of exercise on total body BMC gains occurred across all ages; whereas greater exercise-induced gains at the spine and hip were observed in younger children compared to older children. The majority of studies found a positive | 16849824 | [
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Influence of rapid growth on skeletal adaptation to exercise. | effect of exercise on bone; but typically this involved limiting the analysis to specific sub-populations (i.e.; higher calcium intake; lower baseline activity levels; smaller body size). Limitations of the studies published to date are discussed. | 16849824 | [
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Domain boundary prediction based on profile domain linker propensity index. | Successful prediction of protein domain boundaries provides valuable information not only for the computational structure prediction of multi-domain proteins but also for the experimental structure determination. In this work; a novel index at the profile level is presented; namely; the profile domain linker propensity index (PDLI); which uses the evolutionary information of profiles for domain linker prediction. The frequency profiles are directly calculated from the multiple sequence alignments outputted | 16531120 | [
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Domain boundary prediction based on profile domain linker propensity index. | by PSI-BLAST and converted into binary profiles with a probability threshold. PDLI is then obtained by the frequencies of binary profiles in domain linkers as compared to those in domains. A smooth and normalized numeric profile is generated for any amino acid sequences from which the domain linkers can be predicted. Testing on the Structural Classification of Proteins (SCOP) database and CASP6 targets shows that PDLI outperforms other indexes at the amino acid level. | 16531120 | [
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Late-onset psychogenic nonepileptic seizures. | Psychogenic non-epileptic seizures (PNES) are common; but have not been well studied in older patients. We retrospectively reviewed patients with PNES who were 60 years of age and above at the time of "seizure" onset. Over a 27-month period; nine (9.6%) of 94 patients diagnosed with PNES had onset at age 60 or above. None had evidence for coexisting epilepsy. Eight were women. Characteristics of the group were comparable to younger patients with PNES. We conclude that PNES should be considered as a diagnost | 16531122 | [
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Late-onset psychogenic nonepileptic seizures. | ic possibility in older patients. | 16531122 | [
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Induction of Tc1 response and enhanced cytotoxic T lymphocyte activity in mice by dendritic cells transduced with adenovirus expressing HBsAg. | We evaluated the potential of dendritic cells (DCs) engineered to express antigen of hepatitis B virus (HBV) in priming Th/Tc and HBV-specific CTL responses in mice. Recombinant adenovirus expressing hepatitis B surface antigen (HBsAg) (Ad-S) was constructed; and bone marrow-derived DCs were transduced with Ad-S or pulsed with HBsAg protein. Mice were injected with either Ad-S-transduced DCs or HBsAg-pulsed DCs or plasmid DNA encoding HBsAg twice at 3-week intervals. We showed that adenovirus infection had | 16531121 | [
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Induction of Tc1 response and enhanced cytotoxic T lymphocyte activity in mice by dendritic cells transduced with adenovirus expressing HBsAg. | no further effect on the phenotype; the ability to induce IFN-gamma-producing Th1/Tc1 response or the T cell stimulatory capacity of already mature DCs in vitro. We also showed that immunization with Ad-S-transduced DCs effectively induced Tc1 cells and HBsAg-specific CTLs in vivo and down-regulated the circulating HBsAg and HBV DNA in HBV transgenic mice. Furthermore; these efficacies were stronger than that of HBsAg-pulsed DCs and plasmid DNA. Thus; DCs transduced with recombinant adenovirus may be a prom | 16531121 | [
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Induction of Tc1 response and enhanced cytotoxic T lymphocyte activity in mice by dendritic cells transduced with adenovirus expressing HBsAg. | ising candidate for an effective CTL-based therapeutic vaccine against HBV. | 16531121 | [
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Plumbago zeylanica action on blood coagulation profile with and without blood volume reduction. | Plumbago zeylanica (PZ) is extensively used in Indian systems of medicine for its medicinal properties. The structure of its active principle is similar to that of vitamin K. Its effect on blood coagulation profile after chronic administration has not been reported so far. The PZ extract (2 mg/kg body weight) and napthoquinone (2 mg/kg body weight) given to individual groups were screened for its effect on bleeding time (BT); clotting time (CT); prothrombin time (PT); platelet count and platelet adhesion in | 16531123 | [
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Plumbago zeylanica action on blood coagulation profile with and without blood volume reduction. | albino rats after 1-day; 15-day and 31-day treatment. There was no change in the platelet count in the treated groups when compared to the control levels. But the platelet adhesion was significantly decreased after PZ and also napthaquinone-treated animals in both with and without blood volume reduction after 15th as well as 31st day. Since the napthoquinone-treated group also showed similar response the changes observed after PZ treatment may be due to this component. Even at a lower dosage level (2 mg/kg | 16531123 | [
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The Na+/PO4 cotransporter SLC20A1 gene labels distinct restricted subdomains of the developing pronephros in Xenopus and zebrafish embryos. | The embryonic pronephric kidneys of Xenopus and zebrafish serve as models to study vertebrate nephrogenesis. Recently; multiple subdomains within the Xenopus pronephros have been defined based on the expression of several transport proteins. In contrast; very few studies on the expression of renal transporters have been conducted in zebrafish. We have recently shown that the anterior and posterior segments of the zebrafish pronephric duct may correspond to the proximal tubule and distal tubule/duct compartm | 16531124 | [
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The Na+/PO4 cotransporter SLC20A1 gene labels distinct restricted subdomains of the developing pronephros in Xenopus and zebrafish embryos. | ents of the Xenopus and higher vertebrate pronephros; respectively. Here; we report the embryonic expression pattern of the Na(+)/PO(4) cotransporter SLC20A1 (PiT1/Glvr-1) gene encoding a type III sodium-dependent phosphate cotransporter in Xenopus and zebrafish. In Xenopus; SLC20A1 mRNA is expressed in the somitic mesoderm and lower level of expression is detected in the neural tube; eye; and neural crest cells. From stage 25; SLC20A1 is also detectable in the developing pronephros where expression is rest | 16531124 | [
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The Na+/PO4 cotransporter SLC20A1 gene labels distinct restricted subdomains of the developing pronephros in Xenopus and zebrafish embryos. | ricted to the late portion of the distal pronephric tubules. In zebrafish; SLC20A1 is transcribed from mid-somitogenesis in the anterior part of the pronephros where its expression corresponds to the rostral portion of the expression of other proximal tubule-specific markers. Outside the pronephros; lower level of SLC20A1 expression is also observed in the posterior cardinal and caudal veins. Based on the SLC20A1 expression domain and that of other transporters; four segments have been defined within the ze | 16531124 | [
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The Na+/PO4 cotransporter SLC20A1 gene labels distinct restricted subdomains of the developing pronephros in Xenopus and zebrafish embryos. | brafish pronephros. Together; our data reveal that the zebrafish and Xenopus pronephros have non-identical proximo-distal organizations. | 16531124 | [
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gammaH2AX and MDC1: anchoring the DNA-damage-response machinery to broken chromosomes. | Higher-order chromatin structure presents a barrier to the recognition and repair of DNA lesions. Thus; cells must be equipped with mechanisms to surpass this natural obstacle. DNA damage induces histone H2AX phosphorylation by the phosphoinositide 3-kinase like kinases ATM; ATR and DNA-PKcs. H2AX phosphorylation contributes to DNA double-strand break repair but the mechanisms involved are not yet fully understood. In this review; we discuss recent advances in our understanding of how cells use the epigenet | 16531125 | [
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gammaH2AX and MDC1: anchoring the DNA-damage-response machinery to broken chromosomes. | ic mark of H2AX phosphorylation to dynamically link the DNA-damage-response machinery to broken chromosomes. In addition; we highlight potential regulatory mechanisms of H2AX phosphorylation and speculate about a central functional role of this post-translational histone modification at the interface of DNA repair; chromatin-structure modulation and cell-cycle checkpoint activation. | 16531125 | [
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Respiratory control at exercise onset: an integrated systems perspective. | The near-immediate increase in breathing that accompanies the onset of constant load; dynamic exercise has remained a topic of interest to respiratory physiologists for the better part of a century. During this time; several theories have been proposed and tested in an attempt to explain what has been called the phase I response of exercise hyperpnoea; or the fast neural drive to breathe; and much controversy still remains as to what mediates this response. 'Central motor command' and 'afferent feedback' me | 16531126 | [
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Respiratory control at exercise onset: an integrated systems perspective. | chanisms; as described in animal models; have been centre stage in the debate; with much supportive evidence for their involvement. This review presents three relatively recent and controversial mechanisms and examines the increasing evidence for their involvement in the initial phase of exercise hyperpnoea: (1) the vascular distension hypothesis; (2) the vestibular feedback hypothesis and (3) the behavioral state hypothesis. Some outstanding fundamental questions and directions for future research are pres | 16531126 | [
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Respiratory control at exercise onset: an integrated systems perspective. | ented throughout; always with a focus on mechanistic efficacy in the integrated system response. | 16531126 | [
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Evaluation of IDA-PEVA hollow fiber membrane metal ion affinity chromatography for purification of a histidine-tagged human proinsulin. | Inabilities to process particulate material and to allow the use of high flow rates are limitations of conventional chromatography. Membranes have been suggested as matrix for affinity separation due to advantages such as allowing high flow rates and low-pressure drops. This work evaluated the feasibility of using an iminodiacetic acid linked poly(ethylenevinyl alcohol) membrane in the immobilized metal ion affinity chromatography (IMAC) purification of a human proinsulin(His)(6) of an industrial insulin pr | 16531127 | [
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Evaluation of IDA-PEVA hollow fiber membrane metal ion affinity chromatography for purification of a histidine-tagged human proinsulin. | oduction process. The screening of metal ions showed Ni(2+) as metal with higher selectivity and capacity among the Cu(2+); Ni(2+); Zn(2+) and Co(2+). The membrane showed to be equivalent to conventional chelating beads in terms of selectivity and had a lower capacity (3.68 mg/g versus 12.26 mg/g). The dynamic adsorption capacity for human proinsulin(His)(6) was unaffected by the mode of operation (dead-end and cross-flow filtration). | 16531127 | [
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Selective method for the determination of cefdinir in human plasma using liquid chromatography electrospray ionization tandam mass spectrometry. | A sensitive and selective liquid chromatographic-tandem mass spectrometric (LC-MS/MS) method was developed for the determination of cefdinir in human plasma. After a simple protein precipitation using trichloracetic acid; the post-treatment samples were applied to a prepacked RP18 Waters SymmetryShield column interfaced with a triple quadrupole tandem mass spectrometer. Positive electrospray ionization was employed as the ionization source. The mobile phase consisted of methanol-water-formic acid (25:75:0.0 | 16531128 | [
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Selective method for the determination of cefdinir in human plasma using liquid chromatography electrospray ionization tandam mass spectrometry. | 75; v/v/v). The analyte and I.S. cefaclor were both detected by the use of selected reaction monitoring mode. The method was linear in the concentration range of 5-2;000 ng/ml. The lower limit of quantification was 5 ng/ml. The intra- and inter-day relative standard deviation across three validation runs over the entire concentration range was less than 4.3%. The accuracy determined at three concentrations (36; 360 and 1;800 ng/ml for cefdinir) ranged from 99.6 to 106.7% in terms of recovery. The chromatogr | 16531128 | [
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Selective method for the determination of cefdinir in human plasma using liquid chromatography electrospray ionization tandam mass spectrometry. | aphic run time for each plasma sample was less than 3 min. The method herein described was successfully applied for the evaluation of pharmacokinetic profiles of cefdinir capsule in 12 healthy volunteers. | 16531128 | [
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The mechanism of action of alpha-amylase from Lactobacillus fermentum on maltooligosaccharides. | The action pattern of Lactobacillus fermentum alpha-amylase (FERMENTA) was examined using a series of maltooligosaccharides (G2-G7) as substrates. Structurally; this enzyme has a molecular mass (106 kDa) almost twofold higher than alpha-amylases from mammalians and cereals. The product pattern was investigated through an analysis of products and substrates using HPAEC with pulsed amperometric detection. FERMENTA was consistent with an endo-type of amylase. The bond cleavage frequencies were studied using ma | 16531129 | [
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The mechanism of action of alpha-amylase from Lactobacillus fermentum on maltooligosaccharides. | ltooligosaccharides of various chain lengths as substrate; i.e. maltose up to maltoheptaose and DP 4900-amylose catalyzed by FERMENTA. The catalytic efficiency (k(cat)/K(m)) increased with chain length from maltose (8.7 x 10(4) M(-1) s(-1)) up to amylose (1 x10(9) M(-1) s(-1)). These action pattern results revealed that FERMENTA can readily cleave the third linkage from the reducing end of the maltooligosaccharides (G5-G7). | 16531129 | [
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Liquid chromatography-tandem mass spectrometry validated method for the estimation of indapamide in human whole blood. | A highly precise and sensitive method for the estimation of indapamide in human whole blood using high-performance liquid chromatography-tandem mass spectrometry (LC-MS/MS) is described. The method developed is validated in human whole-blood matrix; with a sensitivity of 0.5 ng/ml as lower limit of quantification. The procedure for the extraction of indapamide and glimepiride as internal standard (IS) involves haemolysis and deprotienation of whole blood using ZnSO(4) followed by liquid-liquid extraction us | 16531130 | [
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Liquid chromatography-tandem mass spectrometry validated method for the estimation of indapamide in human whole blood. | ing ethyl acetate. The sample extracts after drying were reconstituted and analysed by LC-MS/MS; equipped with turbo ion spray (TIS) source; operating in the positive ion and selective reaction monitoring (SRM) acquisition mode to quantify indapamide in human whole blood. The mean recovery for indapamide was 82.40 and 93.23% for IS. The total run time was 2.5 min to monitor both indapamide and the IS. The response of the LC-MS/MS method for indapamide was linear over the range of 0.5-80.0 ng/ml with correla | 16531130 | [
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Liquid chromatography-tandem mass spectrometry validated method for the estimation of indapamide in human whole blood. | tion coefficient; r>or=0.9991. The coefficient of variance (% CV) at 0.5 ng/ml was 4.02% and the accuracy was well within the accepted limit of +/-20% at 0.5 ng/ml and +/-15% at all other concentrations in the linear range. This method is fully validated for the accuracy; precision and stability studies and also applied to subject-sample analysis of bioequivalence study for 1.5mg sustained-release (SR) formulations. | 16531130 | [
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Combined treatment with a beta-blocker and intermittent PTH improves bone mass and microarchitecture in ovariectomized mice. | Intermittent administration of parathyroid hormone (PTH) induces bone remodeling and renewed bone modeling; resulting in net bone gain. beta-blockers improve trabecular bone architecture in young ovariectomized mice by preventing the inhibition of bone formation and stimulation of bone resorption induced by the adrenergic system. To test the hypothesis that PTH and beta-blockers may exert synergistic effects on the skeleton; 15-week-old ovariectomized mice were either given oral propranolol (PRO) or left un | 16531131 | [
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Combined treatment with a beta-blocker and intermittent PTH improves bone mass and microarchitecture in ovariectomized mice. | treated for 8 weeks; adding daily hPTH(1-34) (80 microg/kg/day) or vehicle (VEH) during the last 4 weeks. The skeletal response was evaluated using pDXA; microCT; histomorphometry and biochemical markers. PRO significantly attenuated loss of bone mineral density (BMD) at whole body (WB) (-0.1% in PRO vs. -2.4% in VEH; P < 0.05); but not at spine or femur 4 weeks after OVX. Thereafter; PTH increased BMD at all sites in both PRO- and VEH-treated mice (+6.7% to +14%; P < 0.05 to P < 0.0001 vs. VEH). Over 8 wee | 16531131 | [
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Combined treatment with a beta-blocker and intermittent PTH improves bone mass and microarchitecture in ovariectomized mice. | ks; sequential-combined treatment of PRO and PTH significantly improved BMD over PTH alone at WB (+9.1% vs. +4.4% over baseline; respectively; P < 0.005) and spine (+9% vs. -1.7%; respectively; P < 0.05). These effects were paralleled by a decrease in TRACP5b with PRO (P < 0.05 vs. VEH) and an increase in osteocalcin with PTH; irrespective of PRO (P < 0.0001 vs. VEH). Trabecular bone microarchitecture; such as BV/TV; trabecular number and ConnD; was significantly improved by sequential-combined treatment of | 16531131 | [
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Combined treatment with a beta-blocker and intermittent PTH improves bone mass and microarchitecture in ovariectomized mice. | PRO and PTH compared to PTH alone. At midshaft femur; both PRO and PTH significantly increased cross-sectional area (CSA); but the effects of the two drugs on CSA and cortical thickness were not additive. Dynamic histomorphometry indicated that bone formation was increased by PTH at both cortical and trabecular surfaces; whereas PRO increased osteoblast number and surface on trabecular surfaces. The combined treatment further improved the extent of mineralization and BFR over PTH alone (P < 0.05) at endoco | 16531131 | [
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Combined treatment with a beta-blocker and intermittent PTH improves bone mass and microarchitecture in ovariectomized mice. | rtical surfaces and recapitulated the effects of PTH and PRO alone on trabecular surfaces. These results indicate that beta-adrenergic blockade may partially improve the bone remodeling balance induced by estrogen deficiency. In turn; PRO exerted synergistic effects with intermittent PTH on bone mass and cancellous bone architecture. As such; combined therapy of beta-blockers and PTH may be of interest in the treatment of postmenopausal osteoporosis. | 16531131 | [
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Ibandronate: pharmacology and preclinical studies. | Over the past three decades; changes to the chemical structures of the bisphosphonates have resulted in progressive improvements in their antiresorptive potencies. Ibandronate is a potent; nitrogen-containing bisphosphonate that possesses a tertiary nitrogen group on its R2 side chain and a hydroxyl group on its R1 side chain; which together confer one of the highest antiresorptive potencies of all bisphosphonates. In common with other nitrogen-containing bisphosphonates; ibandronate is a strong inhibitor o | 16531132 | [
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Ibandronate: pharmacology and preclinical studies. | f farnesyl pyrophosphate synthase; which probably accounts for its major effects on osteoclast activity. In addition; it binds strongly to hydroxyapatite. The pharmacological efficacy and safety of various continuous and intermittent regimens of ibandronate have been extensively investigated in experimental models of osteoporosis in several animal species; including rats; dogs; and monkeys. In ovariectomized (OVX) rats; intermittent (dosing interval 2; 4; and 6 weeks) and continuous ibandronate regimens pro | 16531132 | [
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Ibandronate: pharmacology and preclinical studies. | vided equivalent results per total dose irrespective of the dosing regimen. Similar results were obtained in OVX dogs and monkeys. High doses of ibandronate many times those used therapeutically were well tolerated and did not impair bone quality or mineralization in rats. Moreover; bone mass; architecture; and strength were maintained or improved; and bone healing was not adversely affected in animal models; regardless of whether ibandronate was administered intermittently or daily. The findings from all t | 16531132 | [
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Ibandronate: pharmacology and preclinical studies. | hese studies demonstrate the efficacy and safety of intermittent ibandronate regimens and support the development of such regimens for the clinical management of postmenopausal osteoporosis. | 16531132 | [
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Predictors for mortality after lower-extremity amputations in geriatric patients. | The identification of independent predictors for operative and long-term mortality after lower-extremity amputations in the geriatric population would allow targeted management for high-risk patients and appropriate allocation of resources.Univariate and multivariate logistic regression analyses were used to identify independent predictors for operative mortality. Life tables and Kaplan-Meier survival curves were generated. Independent predictors for long-term mortality were tested by log-rank test followed | 16531133 | [
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Predictors for mortality after lower-extremity amputations in geriatric patients. | by Cox regression analysis.Female gender; congestive heart failure; and high-level amputation were identified as independent predictors for operative mortality (odds ratios 4.14; 4.59; and 4.77; respectively). The logistic regression model showed good calibration and discriminative power. Female gender; high-level amputation; cerebrovascular accident; congestive heart failure; noncommunity ambulation; and institutionalization before amputation were associated with an increased risk for long-term mortality. | 16531133 | [
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Predictors for mortality after lower-extremity amputations in geriatric patients. | However; only high-level amputation; congestive heart failure; and noncommunity ambulation remained as independent risk factors after Cox regression analysis (relative risks 1.68; 2.08; and 2.10; respectively).Extra care should be given to patients identified with independent predictors for operative and long-term mortality. | 16531133 | [
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Isolated main pancreatic duct injuries spectrum and management. | We present our experience with the rare injury of isolated major pancreatic duct disruption.From 1997 to 2003; 3 females and 13 males whose age ranged from 4 to 46 years were identified. Stabs caused 2 and blunt trauma 14 injuries. Nine presented acutely. Delay occurred in 7 patients; 6 with pseudocysts and 1 with infected pancreatic necrosis.Nine cases were managed in the acute phase: 6 by splenic-preserving distal pancreatectomy and 2 by distal pancreatico-enteric anastomosis; 1 was drained. A small pseud | 16531134 | [
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Isolated main pancreatic duct injuries spectrum and management. | ocyst and transient pancreatic fistula were the only complications. The 6 cases with pseudocysts were managed endoscopically. Five were stented and 1 was drained without stent. Four had resolution. Two had stent cyst migration. One required a pancreaticojejunostomy and another distal pancreatectomy. One patient died of infected pancreatic necrosis. Long-term outcome could not be assessed.In the acute situation; resection or distal pancreatico-enteric anastomoses are attainable with low morbidity. Endoscopic | 16531134 | [
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Isolated main pancreatic duct injuries spectrum and management. | pseudocyst management options are feasible; with good short-term resolution. Giant cysts may be better managed operatively. | 16531134 | [
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Parathormone response to thyroid surgery. | Confident determination of adequate residual parathyroid function early after thyroid surgery could facilitate the discharge of patients soon after their operation without the need for subsequent serum calcium monitoring and/or calcium and vitamin D supplementation.Thirty-one patients who underwent 33 thyroid operations (22 unilateral lobectomies and 11 bilateral thyroid resections) were prospectively studied. Parathormone (PTH) levels were measured intraoperatively; and serum calcium was monitored before a | 16531135 | [
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Parathormone response to thyroid surgery. | nd after surgery to determine PTH and calcium homeostatic response to thyroid surgery.A significant decrease in circulating PTH occurred during 27 procedures; most markedly after specimen mobilization. Intraoperative PTH and postoperative calcium levels were lowest in those who underwent bilateral operations. Patients who underwent unilateral procedures experienced significant decreases in PTH but not postoperative calcium levels. A PTH level >50% of baseline predicted normocalcemia by postoperative day 3. | 16531135 | [
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Parathormone response to thyroid surgery. | However; PTH level did not accurately triage other patients' risk for postoperative hypocalcemia.A decrease in PTH levels intraoperatively is a common event during both unilateral and bilateral thyroid operations. Although normal PTH levels at the end of surgery ensure normocalcemia after surgery; patients with low final PTH measurements may not develop significant hypocalcemia after surgery. | 16531135 | [
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Liver resection as the definitive treatment for unilateral non-oriental primary intrahepatic lithiasis. | The current study sought to evaluate the results of liver resection as the treatment for unilateral non-oriental primary intrahepatic lithiasis (PHIL).Twenty-seven symptomatic patients (mean age 42 years) were submitted to liver resection; the indications were parenchymal fibrosis/atrophy in 22 and biliary stenosis in 5. Resection was associated with a Roux-en-Y hepaticojejunostomy in patients with a significant degree of dilation of the extrahepatic biliary duct.There was no operative mortality and the mor | 16531136 | [
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