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--- |
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language: |
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- en |
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bigbio_language: |
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- English |
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license: unknown |
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multilinguality: monolingual |
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bigbio_license_shortname: UNKNOWN |
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pretty_name: HPRD50 |
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homepage: |
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bigbio_pubmed: True |
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bigbio_public: True |
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bigbio_tasks: |
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- RELATION_EXTRACTION |
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- NAMED_ENTITY_RECOGNITION |
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--- |
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# Dataset Card for HPRD50 |
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## Dataset Description |
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- **Homepage:** |
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- **Pubmed:** True |
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- **Public:** True |
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- **Tasks:** RE,NER |
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HPRD50 is a dataset of randomly selected, hand-annotated abstracts of biomedical papers |
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referenced by the Human Protein Reference Database (HPRD). It is parsed in XML format, |
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splitting each abstract into sentences, and in each sentence there may be entities and |
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interactions between those entities. In this particular dataset, entities are all |
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proteins and interactions are thus protein-protein interactions. |
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Moreover, all entities are normalized to the HPRD database. These normalized terms are |
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stored in each entity's 'type' attribute in the source XML. This means the dataset can |
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determine e.g. that "Janus kinase 2" and "Jak2" are referencing the same normalized |
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entity. |
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Because the dataset contains entities and relations, it is suitable for Named Entity |
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Recognition and Relation Extraction. |
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## Citation Information |
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``` |
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@article{fundel2007relex, |
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title={RelEx—Relation extraction using dependency parse trees}, |
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author={Fundel, Katrin and K{"u}ffner, Robert and Zimmer, Ralf}, |
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journal={Bioinformatics}, |
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volume={23}, |
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number={3}, |
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pages={365--371}, |
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year={2007}, |
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publisher={Oxford University Press} |
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} |
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``` |
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