README.md

Dataset Card for re-medical-annotations

Dataset Description

Dataset Summary

HuggingFace Dataset from the Inception Medical Annotations project.

This dataset can be used locally with any archive downloaded from Inception that contains relation annotations.

Loading this dataset requires dkpro-cassis>=0.7.2.

Example: load the dataset from the "RE Temporality POC"

import datasets

ds = datasets.load_dataset(
    "bio-datasets/re-medical-annotations",
    data_dir=<Inception Archive path>,
    labels = ["bound"],
)

Dataset Structure

Data Fields

• text (str): text of the sentence
• subj_start (int): start char of the relation subject mention
• subj_end (int): end char of the relation subject mention, exclusive
• subj_type (str): NER label of the relation subject
• obj_start (int): start char of the relation object mention
• obj_end (int): end char of the relation object mention, exclusive
• obj_type (str): NER label of the relation object
• relation (str): the relation label of this instance