id
int64 0
5.38k
| issuekey
stringlengths 4
16
| created
stringlengths 19
19
| title
stringlengths 5
252
| description
stringlengths 1
1.39M
| storypoint
float64 0
100
|
|---|---|---|---|---|---|
599 |
DM-3194
|
07/21/2015 02:46:15
|
Fix cluster install procedure and improve docker support
|
Document how-to update cluster from Qserv release: See http://www.slac.stanford.edu/exp/lsst/qserv/2015_07/HOW-TO/cluster-deployment.html
| 0.5 |
600 |
DM-3196
|
07/21/2015 23:25:57
|
makeWcs() chokes on decam images in 10.1
|
In 10.0, processCcdDecam.py could process decam images to completion (whether the WCS was read correctly is a different question). Now it fails on makeWcs() (see traceback below), and I suspect this change in behavior is related to DM-2883 and DM-2967. Repository with both data and code to reproduce: http://www.astro.washington.edu/users/yusra/reproduce/reproduceMakeWcsErr.tar.gz (apologies for the size) The attachment is a document describing the WCS representation in the images from the community pipeline, courtesy of Francisco Forster. Please advise. This ticket captures any changes made to afw. {code} D-108-179-166-118:decam yusra$ processCcdDecam.py newTestRepo/ --id visit=0232847 ccdnum=10 --config calibrate.doPhotoCal=False calibrate.doAstrometry=False calibrate.measurePsf.starSelector.name="secondMoment" doWriteCalibrateMatches=False --clobber-config : Loading config overrride file '/Users/yusra/lsst_devel/LSST/repos/obs_decam_ya/config/processCcdDecam.py' : Config override file does not exist: '/Users/yusra/lsst_devel/LSST/repos/obs_decam_ya/config/decam/processCcdDecam.py' : input=/Users/yusra/decam/newTestRepo : calib=None : output=None CameraMapper: Loading registry registry from /Users/yusra/decam/newTestRepo/registry.sqlite3 processCcdDecam: Processing {'visit': 232847, 'ccdnum': 10} makeWcs WARNING: Stripping PVi_j keys from projection RA---TPV/DEC--TPV processCcdDecam FATAL: Failed on dataId={'visit': 232847, 'ccdnum': 10}: File "src/image/Wcs.cc", line 130, in void lsst::afw::image::Wcs::_initWcs() Failed to setup wcs structure with wcsset. Status 5: Invalid parameter value {0} lsst::pex::exceptions::RuntimeError: 'Failed to setup wcs structure with wcsset. Status 5: Invalid parameter value' Traceback (most recent call last): File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/pipe_base/10.1-3-g18c2ba7+49/python/lsst/pipe/base/cmdLineTask.py", line 320, in __call__ result = task.run(dataRef, **kwargs) File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/pipe_base/10.1-3-g18c2ba7+49/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/Users/yusra/lsst_devel/LSST/repos/obs_decam_ya/python/lsst/obs/decam/processCcdDecam.py", line 77, in run mi = exp.getMaskedImage() File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/daf_persistence/10.1-1-g6edbc00+28/python/lsst/daf/persistence/readProxy.py", line 41, in __getattribute__ subject = oga(self, '__subject__') File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/daf_persistence/10.1-1-g6edbc00+28/python/lsst/daf/persistence/readProxy.py", line 136, in __subject__ set_cache(self, get_callback(self)()) File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/daf_persistence/10.1-1-g6edbc00+28/python/lsst/daf/persistence/butler.py", line 242, in <lambda> innerCallback(), dataId) File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/daf_persistence/10.1-1-g6edbc00+28/python/lsst/daf/persistence/butler.py", line 236, in <lambda> location, dataId) File "/Users/yusra/lsst_devel/LSST/repos/obs_decam_ya/python/lsst/obs/decam/decamMapper.py", line 118, in bypass_instcal wcs = afwImage.makeWcs(md) File "/Users/yusra/lsst_devel/LSST/DMS5/DarwinX86/afw/10.1-26-g9124caf+1/python/lsst/afw/image/imageLib.py", line 8706, in makeWcs return _imageLib.makeWcs(*args) RuntimeError: File "src/image/Wcs.cc", line 130, in void lsst::afw::image::Wcs::_initWcs() Failed to setup wcs structure with wcsset. Status 5: Invalid parameter value {0} lsst::pex::exceptions::RuntimeError: 'Failed to setup wcs structure with wcsset. Status 5: Invalid parameter value' {code}
| 2 |
601 |
DM-3199
|
07/22/2015 13:38:05
|
Standardize Qserv install procedure: step 1 build docker container for master/worker instance and development version
|
- shmux could be used for parallel ssh (remove Qserv builtin one) - look at "serf and consul" (See Confluence pages) - improve doc: http://www.slac.stanford.edu/exp/lsst/qserv/2015_07/HOW-TO/index.html - run multiple instances/versions of Qserv using different run dir/ports and the same data
| 8 |
602 |
DM-3204
|
07/23/2015 16:02:53
|
W16 Data Access and Db Release Documentation
|
Write Release documentation covering Data Access and Database work.
| 5 |
603 |
DM-3209
|
07/23/2015 17:13:03
|
Add debugging for astrometry.net solver
|
To be able to debug astrometric matching, it helps to be able to visualise the source positions, the distorted source positions, and the reference positions. This is a pull request to add these.
| 0.5 |
604 |
DM-3214
|
07/27/2015 10:39:34
|
ChebyshevBoundedField should use _ not . as field separators for persistence
|
ChebyshevBoundedField uses "." instead of "\_" as field separators in its afw table persistence. This is the old way of doing things, and unfortunately causes errors when reading in older versions of tables, becaus afw converts "." to "_" in that situation. This shows up as a unit test failure in DM-2981 (brought over from HSC) when an older version table is read in. It is an open question whether to fix this as part of DM-2981 (which conveniently has a test that shows the problem, though not intentionally so) or separately, in which case a new test is wanted. In the former case I'm happy to do the work so I can finish DM-2981. Many thanks to Jim Bosch for diagnosing the problem.
| 1 |
605 |
DM-3218
|
07/27/2015 15:43:47
|
unable to create public images
|
Errors are returned when attempting to upload an image marked as public.
| 1 |
606 |
DM-3223
|
07/27/2015 16:23:26
|
Improve czar-worker communication debugging
|
Add features to make it easier to debug communication problems. Particularly, record the source of a message, and remove extraneous messages.
| 2 |
607 |
DM-3227
|
07/27/2015 17:15:58
|
openstack API endpoint is broken
|
Similar to what was observed in DM-3226, the referral endspoint returned by {code:java} https://nebulous.ncsa.illinois.edu:5000 {code} are not FQDNs. This fundamentally breaks any attempt to use the API one step past authenticating with keystone. This is an example HTTP response: {code:java} HTTP/1.1 200 OK Date: Mon, 27 Jul 2015 23:11:02 GMT Server: Apache/2.4.10 (Ubuntu) Vary: X-Auth-Token X-Distribution: Ubuntu x-openstack-request-id: req-ac7bb613-86ef-43ab-a663-75c2ed3fb124 Content-Length: 1656 Content-Type: application/json {"access": {"token": {"issued_at": "2015-07-27T23:11:02.342216", "expires": "2015-07-28T00:11:02Z", "id": "99b843d4baf94569a0d34ca4fecb470c", "tenant": {"description": null, "enabled": true, "id": "d1f16653856540d386224fb057b5b00c", "name": "LSST"}, "audit_ids": ["fAP8851vTQi1n5pYmNoIjw"]}, "serviceCatalog": [{"endpoints": [{"adminURL": "http://nebula:9292", "region": "RegionOne", "internalURL": "http://nebula:9292", "id": "49365a8e8fe743af9d517e84a98e3ee9", "publicURL": "http://nebula:9292"}], "endpoints_links": [], "type": "image", "name": "glance"}, {"endpoints": [{"adminURL": "http://nebula:8774/v2/d1f16653856540d386224fb057b5b00c", "region": "RegionOne", "internalURL": "http://nebula:8774/v2/d1f16653856540d386224fb057b5b00c", "id": "c1e31df3656042ef9c5502efd7d574f2", "publicURL": "http://nebula:8774/v2/d1f16653856540d386224fb057b5b00c"}], "endpoints_links": [], "type": "compute", "name": "nova"}, {"endpoints": [{"adminURL": "http://nebula:9696", "region": "RegionOne", "internalURL": "http://nebula:9696", "id": "266c9dc8e0344f8fa3f078652e868443", "publicURL": "http://nebula:9696"}], "endpoints_links": [], "type": "network", "name": "neutron"}, {"endpoints": [{"adminURL": "http://nebula:35357/v2.0", "region": "RegionOne", "internalURL": "http://nebula:5000/v2.0", "id": "5d474008bcee4f44800546e3f3302404", "publicURL": "http://nebula:5000/v2.0"}], "endpoints_links": [], "type": "identity", "name": "keystone"}], "user": {"username": "jhoblitt", "roles_links": [], "id": "6ea0c8e153b04ae29572c5fd877b6ac3", "roles": [{"name": "user"}], "name": "jhoblitt"}, "metadata": {"is_admin": 0, "roles": ["142761bd922e453294e9b7086a227cbc"]}}} {code}
| 1 |
608 |
DM-3228
|
07/27/2015 18:59:01
|
evaluate NCSA OpenStack against SQRE requirements and provide feedback - part 1
|
See also https://confluence.lsstcorp.org/pages/viewpage.action?spaceKey=LDMDG&title=NCSA+Nebula+OpenStack+Issues
| 2 |
609 |
DM-3237
|
07/28/2015 15:04:04
|
Fix problems with no-result queries on multi-node setup
|
For queries like: select * from Object where id = <non existent id> qserv can't map it to any chunk, and it ends up executing SELECT * FROM qservTest_case01_qserv.Object_1234567890 AS QST_1_ WHERE objectId=<non existent id> the chunk 1234567890 is a special chunk and it exists on all nodes. And that fails with: (build/qdisp/QueryResource.cc:61) - Error provisioning, msg=Unable to write file; multiple files exist. code=2
| 1 |
610 |
DM-3241
|
07/28/2015 18:21:21
|
Create images for the mask bits at server side
|
LSST FITS images will have a extension that indicate the mask bits. In order to overlay the masks on the primary image, we need to turn the mask bits into a set of images. This task is to take the requested bits and FITS as input, output a set of images for each requested bit. Each bit will have different color.
| 20 |
611 |
DM-3243
|
07/28/2015 18:29:00
|
Include polygon bounds in CoaddPsf logic
|
This is a port of [HSC-974|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-974]. Original description: The {{CoaddPsf}} class should use the polygon bounding areas that were added to {{Exposure}} and {{ExposureRecord}} in DM-2981 (was: HSC-973) when determining which PSF images to coadd.
| 1 |
612 |
DM-3245
|
07/28/2015 22:55:27
|
Add support for SUBMIT query parsing to czar
|
We need to be able to pass information from user about query type (sync/async). This may require tweaking the parser.
| 2 |
613 |
DM-3249
|
07/28/2015 23:06:31
|
Revisit and document user-facing aspects of async queries
|
Outline all aspects of async queries that are affecting users, discuss with the DM team, and document. This includes things like: * managing async queries (checking status, terminating) * retrieving results from async queries * managing query results (purging policies etc) * probably more, need to think about it...
| 8 |
614 |
DM-3253
|
07/29/2015 00:10:14
|
Unify KVInterface python and c++ interfaces
|
Swig the C++ mysql-based KvInterface implementation.
| 8 |
615 |
DM-3257
|
07/29/2015 07:53:01
|
Port flux.scaled from HSC
|
[HSC-1295|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-1295] introduces {{flux.scaled}}, which measures the flux within a circular aperture that is set from the size of the PSF, scaled by some factor. Stephen Gwyn recommends using this as our fiducial calibration flux.
| 2 |
616 |
DM-3258
|
07/29/2015 08:27:36
|
CoaddPsf.getAveragePosition() is not a valid position
|
This is a port of [HSC-1138|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-1138] to LSST. That is an aggregate of two related minor fixes: * {{CoaddInputRecorder}} should default to {{saveVisitGoodPix=True}} so that average positions in the {{CoaddPsf}} can be properly weighted; * {{computeAveragePosition}} and {{doComputeKernelImage}} should be consistent about the data included when determining whether a source is off image.
| 1 |
617 |
DM-3259
|
07/29/2015 09:38:37
|
Define polygon bounds for CCDs based on vignetted regions
|
This is a port of [HSC-976|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-976] to LSST. The original issue description was: We should set the polygon bounds (added in DM-2981 [was HSC-973]) for HSC CCD exposures to cover the non-vignetted regions. This should probably be done in ISR or some other camera-specific location. Note that, contrary to the description in DM-2981, this functionality was not included there.
| 1 |
618 |
DM-3347
|
07/30/2015 10:26:53
|
assertWcsNearlyEqualOverBBox and friends is too hard to use as a free function
|
assertWcsNearlyEqualOverBBox and similar functions elsewhere in afw were written to be methods of lsst.utils.tests.TestCase, so their first argument is a testCase. This is fine for use in unit tests, but a hassle to use as free functions because the user must provide a testCase argument (though it need only be a trivial class with a fail(self, msgStr) method). Worse, that minimal requirement is not documented, so technically providing a simple mock test case is unsafe. I have two proposals: - Document the fact that testCase need only support fail(self, msgStr). This makes it clear how to safely use these functions as free functions. - Allow testCase to be None, in which case RuntimeError is raised. That makes these functions even easier to use as free functions.
| 1 |
619 |
DM-3349
|
07/30/2015 14:57:35
|
Add test case for ExposureRecord::contains
|
In DM-3243 we ported from HSC the ability to take account of the associated {{validPolygon}} when checking whether a point falls within an {{Exposure}}. This functionality was not accompanied by an adequate unit test.
| 2 |
620 |
DM-3355
|
07/31/2015 12:47:47
|
Support the FITS cube reader
|
RSA needs to be able to read in the FITS cube generated by Herschel project. We need to guide the effort so the code is generic enough for non-Herschel data.
| 1 |
621 |
DM-3356
|
07/31/2015 14:34:00
|
Fix Firefly build script so it'll work with latest version of gradle
|
Firefly build was failing when using gradle version 2.5. Minor changes to the dependencies declaration fixed it.
| 1 |
622 |
DM-3358
|
07/31/2015 16:09:53
|
Add mysql-based test to multi-node integration test
|
At the moment multi-node integration test runs only on multi-node using Qserv, it does not run on plain mysql, and thus we can't validate results. The story involves tweaking qserv_testdata such that we can run mysql test on the czar, and compare results from mysql and qserv.
| 5 |
623 |
DM-3377
|
08/03/2015 07:01:01
|
Initial issue investigation for the nebula openstack
|
The nebula openstack system at NSCA first became available ~Fri Jul 24 and the week of Jul 27 -- 31 was spent testing and debugging issues that the LSST team identified within, for example, DM-3225, DM-3219, DM-3227 and others.
| 20 |
624 |
DM-3387
|
08/03/2015 13:22:38
|
Make use of good pixel count when building CoaddPsfs
|
When building a CoaddPsf we have the ability to take account of the number of pixels contributed by the inputs (see http://ls.st/paj and DM-3258). However, the {{CoaddPsf}} constructor fails to use this information. It should copy this field when copying the provided {{ExposureCatalog}}, so that {{computeAveragePosition}} can use it.
| 1 |
625 |
DM-3390
|
08/03/2015 16:58:35
|
Re-generate data for large scale tests at in2p3
|
Sources were incorrectly duplicated, need to be redone
| 3 |
626 |
DM-3391
|
08/03/2015 17:13:54
|
Refactor Zscale.java class
|
In early this year, the decision all data types would be converted to float in FitsRead. Thus,the bitpixel is not relevant. In Zscale, it still uses bitpixel to test the data type. It should be refactored in the same manner as FitsRead etc.
| 2 |
627 |
DM-3398
|
08/04/2015 16:44:21
|
Fix problem with default_engine
|
Fix the problem: {quote} 08/04/2015 05:39:47 werkzeug INFO: 141.142.237.30 - - [04/Aug/2015 17:39:47] "GET /meta/v0/ HTTP/1.1" 200 - 08/04/2015 05:39:49 __main__ ERROR: Exception on /meta/v0/db [GET] Traceback (most recent call last): File "/home/becla/stack/Linux64/flask/0.10.1+8/lib/python/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app response = self.full_dispatch_request() File "/home/becla/stack/Linux64/flask/0.10.1+8/lib/python/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request rv = self.handle_user_exception(e) File "/home/becla/stack/Linux64/flask/0.10.1+8/lib/python/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception reraise(exc_type, exc_value, tb) File "/home/becla/stack/Linux64/flask/0.10.1+8/lib/python/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request rv = self.dispatch_request() File "/home/becla/stack/Linux64/flask/0.10.1+8/lib/python/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request return self.view_functions[rule.endpoint](**req.view_args) File "/nfs/home/becla/stack/repos/dax_metaserv/python/lsst/dax/metaserv/metaREST_v0.py", line 59, in getDb return _resultsOf(text(query), scalar=True) File "/nfs/home/becla/stack/repos/dax_metaserv/python/lsst/dax/metaserv/metaREST_v0.py", line 122, in _resultsOf engine = current_app.config["default_engine"] KeyError: 'default_engine' {quote}
| 1 |
628 |
DM-3400
|
08/05/2015 09:44:21
|
Eliminate circular aliases in slot centroid definition
|
[~smonkewitz] has discovered that our schema aliases for even the default configuration of measurement algorithms involve cycles, because the slot centroid algorithm contains a reference to its own flag. Fixing this should just involve an extra check in {{SafeCentroidExtractor}}.
| 1 |
629 |
DM-3404
|
08/05/2015 13:22:49
|
Port HSC updates to ingestImages.py
|
ingestImages.py provides a camera-agnostic manner of creating a data repository (including a registry). The HSC fork contains multiple improvements not present on the LSST side. We need these in order to ingest the HSC data.
| 2 |
630 |
DM-3411
|
08/05/2015 18:19:32
|
workspace functions specification document
|
The first version of the document is here https://confluence.lsstcorp.org/pages/viewpage.action?pageId=41783931
| 20 |
631 |
DM-3419
|
08/07/2015 13:07:45
|
obs_decam unit test for reading data
|
The unit test wasn't working before and I edited the unit test of reading raw data. This got included with DM-3462. This unit test needs testdata_decam to be setup. The test fails with the stack b1597 at makeWcs (DM-3196). The afw branch u/yusra/DM-3196 is a temporary fix before DM-3196 is resolved.
| 2 |
632 |
DM-3437
|
08/10/2015 18:28:09
|
Add column names metadata to db query results
|
Per discussion at data access meeting Aug 10, it'd be good to send column names with the query results.
| 2 |
633 |
DM-3440
|
08/11/2015 09:30:52
|
add meas_extensions_photometryKron to lsstsw, lsst_distrib
|
meas_extensions_photometryKron should be added to the CI system, since we are trying to keep it updated. This is blocked by DM-2429 because that includes a fix for a unit test (which the CI system would have caught).
| 1 |
634 |
DM-3442
|
08/11/2015 16:37:10
|
Processing y-band HSC data fails in loading reference sources
|
{code} processCcd.py /lsst3/HSC/data/ --output /raid/price/test --id visit=904400 ccd=50 [...] processCcd.calibrate.astrometry.solver.loadAN: Loading reference objects using center (1023.5, 2091) pix = Fk5Coord(319.8934727, -0.0006943, 2000.00) sky and radius 0.111920792477 deg processCcd FATAL: Failed on dataId={'taiObs': '2013-11-03', 'pointing': 672, 'visit': 904400, 'dateObs': '2013-11-03', 'filter': 'HSC-Y', 'field': 'STRIPE82L', 'ccd': 50, 'expTime': 30.0}: Could not find flux field(s) y_camFlux, y_flux Traceback (most recent call last): File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/cmdLineTask.py", line 320, in __call__ result = task.run(dataRef, **kwargs) File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/pipe_tasks/10.1-28-gf9582e4+2/python/lsst/pipe/tasks/processCcd.py", line 85, in run result = self.process(sensorRef, postIsrExposure) File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/pipe_tasks/10.1-28-gf9582e4+2/python/lsst/pipe/tasks/processImage.py", line 160, in process calib = self.calibrate.run(inputExposure, idFactory=idFactory) File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/pipe_tasks/10.1-28-gf9582e4+2/python/lsst/pipe/tasks/calibrate.py", line 457, in run astromRet = self.astrometry.run(exposure, sources1) File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/meas_astrom/10.1-19-g6e01b25+5/python/lsst/meas/astrom/anetAstrometry.py", line 177, in run results = self.astrometry(sourceCat=sourceCat, exposure=exposure, bbox=bbox) File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/meas_astrom/10.1-19-g6e01b25+5/python/lsst/meas/astrom/anetAstrometry.py", line 292, in astrometry astrom = self.solver.determineWcs(sourceCat=sourceCat, exposure=exposure, bbox=bbox) File "/home/lsstsw/stack/Linux64/meas_astrom/10.1-19-g6e01b25+5/python/lsst/meas/astrom/anetBasicAstrometry.py", line 409, in determineWcs return self.determineWcs2(sourceCat=sourceCat, **margs) File "/home/lsstsw/stack/Linux64/meas_astrom/10.1-19-g6e01b25+5/python/lsst/meas/astrom/anetBasicAstrometry.py", line 437, in determineWcs2 astrom = self.useKnownWcs(sourceCat, wcs=wcs, **kw) File "/home/lsstsw/stack/Linux64/meas_astrom/10.1-19-g6e01b25+5/python/lsst/meas/astrom/anetBasicAstrometry.py", line 308, in useKnownWcs calib = None, File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/meas_algorithms/10.1-15-g0d3ecf6/python/lsst/meas/algorithms/loadReferenceObjects.py", line 173, in loadPixelBox loadRes = self.loadSkyCircle(ctrCoord, maxRadius, filterName) File "/home/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+15/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/home/lsstsw/stack/Linux64/meas_astrom/10.1-19-g6e01b25+5/python/lsst/meas/astrom/loadAstrometryNetObjects.py", line 141, in loadSkyCircle fluxField = getRefFluxField(schema=refCat.schema, filterName=filterName) File "/home/lsstsw/stack/Linux64/meas_algorithms/10.1-15-g0d3ecf6/python/lsst/meas/algorithms/loadReferenceObjects.py", line 40, in getRefFluxField raise RuntimeError("Could not find flux field(s) %s" % (", ".join(fluxFieldList))) RuntimeError: Could not find flux field(s) y_camFlux, y_flux {code} We should be able to fix this by setting config parameters (e.g., {{calibrate.astrometry.solver.defaultFilter}} or {{calibrate.astrometry.solver.filterMap}}), but how do we keep that synched with the choice of reference catalog? And once we get past astrometry, we also have the same problem in photocal.
| 2 |
635 |
DM-3450
|
08/12/2015 22:07:19
|
Tweaks to configurations discovered during S15 tests
|
Apply tweaks we found useful when running large scale tests. This includes: # etc/my.cnf: change max_connections to 512 # add": {quote}export XRD_REQUESTTIMEOUT=64000 export XRD_STREAMTIMEOUT=64000 export XRD_DATASERVERTTL=64000 export XRD_TIMEOUTRESOLUTION=64000{quote} to init.d/qserv-czar # add : {quote}ulimit -c unlimited{quote} to all startup scripts in init.d. This will make sure core file is always dumped when we have problems.
| 1 |
636 |
DM-3451
|
08/12/2015 22:09:19
|
Resolve problem with running many simultaneous queries
|
When we run with 110 simultaneous queries, czar fails with "uncaught exception"
| 2 |
637 |
DM-3452
|
08/13/2015 01:01:32
|
Integrate pipelines with MySQL and Qserv
|
Load data produced by pipelines into MySQL (on lsst10), and Qserv
| 5 |
638 |
DM-3453
|
08/13/2015 10:22:10
|
AstrometryTask.run return not consistent with ANetAstrometryTask
|
ANetAstrometryTask.run returns matchMetadata but AstrometryTask.run returns matchMeta. The two must agree. It turns out that matchMeta is more widely used, so I'll standardize on that.
| 1 |
639 |
DM-3454
|
08/13/2015 11:56:09
|
Odd error message in getDistortedWcs
|
lsst.afw.image.utils.getDistortedWcs complains as follows if the provided exposure has no WCS: "exposure must have a WCS to use as an initial guess". It should not say anything about an initial guess. This is presumably a leftover from when the code was part of meas_astrom. Thanks to [~price] for pointing this out.
| 0 |
640 |
DM-3455
|
08/13/2015 12:26:56
|
ProcessImageTask.matchSources fails if using ANetAstrometryTask
|
ProcessImageTask.matchSources fails when using ANetAstrometryTask with the following error: {code} processCcd.calibrate.astrometry: Applying distortion correction processCcd FATAL: Failed on dataId={'taiObs': '2013-11-03', 'pointing': 672, 'visit': 904400, 'dateObs': '2013-11-03', 'filter': 'HSC-Y', 'field': 'STRIPE82L', 'ccd': 50, 'expTime': 30.0}: File "src/table/Schema.cc", line 239, in lsst::afw::table::SchemaItem<T> lsst::afw::table::detail::SchemaImpl::find(const string&) const [with T = double; std::string = std::basic_string<char>] Field or subfield withname 'astrom_distorted_x' not found with type 'D'. {0} lsst::pex::exceptions::NotFoundError: 'Field or subfield withname 'astrom_distorted_x' not found with type 'D'.' Traceback (most recent call last): File "/ssd/rowen/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+3/python/lsst/pipe/base/cmdLineTask.py", line 320, in __call__ result = task.run(dataRef, **kwargs) File "/ssd/rowen/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+3/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/ssd/rowen/lsstsw/stack/Linux64/pipe_tasks/tickets.DM-3453-g086c9ddd0a/python/lsst/pipe/tasks/processCcd.py", line 85, in run result = self.process(sensorRef, postIsrExposure) File "/ssd/rowen/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+3/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/ssd/rowen/lsstsw/stack/Linux64/pipe_tasks/tickets.DM-3453-g086c9ddd0a/python/lsst/pipe/tasks/processImage.py", line 219, in process srcMatches, srcMatchMeta = self.matchSources(calExposure, sources) File "/ssd/rowen/lsstsw/stack/Linux64/pipe_tasks/tickets.DM-3453-g086c9ddd0a/python/lsst/pipe/tasks/processImage.py", line 250, in matchSources astromRet = astrometry.loadAndMatch(exposure=exposure, sourceCat=sources) File "/ssd/rowen/lsstsw/stack/Linux64/pipe_base/10.1-4-g6ba0cc7+3/python/lsst/pipe/base/timer.py", line 118, in wrapper res = func(self, *args, **keyArgs) File "/ssd/rowen/lsstsw/stack/Linux64/meas_astrom/tickets.DM-3453-gbb2ad1f49c/python/lsst/meas/astrom/anetAstrometry.py", line 321, in loadAndMatch with self.distortionContext(sourceCat=sourceCat, exposure=exposure) as bbox: File "/ssd/rowen/lsstsw/anaconda/lib/python2.7/contextlib.py", line 17, in __enter__ return self.gen.next() File "/ssd/rowen/lsstsw/stack/Linux64/meas_astrom/tickets.DM-3453-gbb2ad1f49c/python/lsst/meas/astrom/anetAstrometry.py", line 295, in distortionContext sourceCat.table.defineCentroid(self.distortedName) File "/ssd/rowen/lsstsw/stack/Linux64/afw/10.1-37-gaedf466/python/lsst/afw/table/tableLib.py", line 8887, in defineCentroid return _tableLib.SourceTable_defineCentroid(self, *args) NotFoundError: File "src/table/Schema.cc", line 239, in lsst::afw::table::SchemaItem<T> lsst::afw::table::detail::SchemaImpl::find(const string&) const [with T = double; std::string = std::basic_string<char>] Field or subfield withname 'astrom_distorted_x' not found with type 'D'. {0} lsst::pex::exceptions::NotFoundError: 'Field or subfield withname 'astrom_distorted_x' not found with type 'D'.' {code} This is probably a result of DM-2939. The basic problem is that the distortion context in ANetAstrometryTask should not be run at that point in processing. [~price] suggests that a simple clean fix is to make the distortion context a no-op if the WCS already contains distortion, if that works. This is what I will try first.
| 1 |
641 |
DM-3456
|
08/13/2015 12:52:24
|
Fix problems with talking from webserv to qserv
|
Flask or sqlalchemy which are part of webserv are producing some extra queries that are confusing qserv. So basically, at the moment even the simplest query run via webserv that is directed to qserv fails.
| 2 |
642 |
DM-3459
|
08/13/2015 18:23:07
|
make forced and SFM interfaces more consistent
|
From [~rowen]: {quote} SimpleMeasurementTask.run and ForcedMeasurementTask.run now both take a source catalog, but the two use the opposite order for the first two arguments (one has the catalog first, the other has the exposure first) {quote}
| 1 |
643 |
DM-3460
|
08/14/2015 11:38:24
|
applyApCorr mis-handles missing data
|
In ApplyApCorrTask.run the following lines do not behave as expected because get returns None if the data is missing, rather than raising an exception: {code} try: apCorrModel = apCorrMap.get(apCorrInfo.fluxName) apCorrSigmaModel = apCorrMap.get(apCorrInfo.fluxSigmaName) except Exception: {code}
| 1 |
644 |
DM-3462
|
08/14/2015 14:13:17
|
Make obs_decam handle raw data
|
The current obs_decam expects instrument calibrated data from the community pipeline, i.e. it requires matching instcal (Instrument Calibrated), dqmask (the associated mask file), and wtmap (weight map) data from the same visit. This issue is to add functionality so that raw DECam images can be ingested into registry and retrieved by the data butler. Practically, this will create new or expand existing sub-classes of CameraMapper and IngestTask. A brief summary of changes: - The unit test getRaw.py is updated and should pass, with DM-3196 - Working testdata_decam for the unit test is currently at lsst-dev /lsst8/testdata_decam and https://uofi.box.com/testdata-decam - DecamInstcalMapper is renamed to DecamMapper, to reflect that Butler can also get "raw" now besides "instcal". Please update _mapper in your data repositories. - To create a registry for raw data, run {code:java} ingestImagesDecam.py /path/to/repo --mode=link --filetype="raw" /path/*.fits.fz {code} - The default filetype is "instcal" for ingestImagesDecam.py, so previous use for instcal stays.
| 13 |
645 |
DM-3463
|
08/14/2015 15:09:17
|
psfex lapack symbols may collide with built in lapack
|
On my Mac meas_extensions_psfex fails to build due to the numpy config test failing. "import numpy" fails with: {code} dlopen(/Users/rowen/LSST/lsstsw/anaconda/lib/python2.7/site-packages/numpy/linalg/lapack_lite.so, 2): can't resolve symbol __NSConcreteStackBlock in /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib because dependent dylib #1 could not be loaded in /System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libvMisc.dylib {code} Our best guess (see discussion in Data Management 2015-08-14 at approx. 1:57 PM Pacific time) is that the special lapack functions in psfex are colliding with the lapack that anaconda uses. In case it helps I see this on OS X 10.9.5. I do not see it on lsst-dev.
| 2 |
646 |
DM-3468
|
08/14/2015 20:49:19
|
drawing text to ds9 fails if size or the font family is set
|
Commands like {code} ds9.dot('xxxx', 100, 100, size=3) ds9.dot('xxxx', 100, 120, fontFamily="times") {code} silently fail. The problem is that commands like {code} xpaset -p ds9 regions command '{text 100 100 # text=xxxx color=red font="times 12"}' {code} fail; you need to say {{font=times 12 normal}}
| 1 |
647 |
DM-3470
|
08/15/2015 16:21:12
|
Install/deploy SUI web application at NCSA
|
For summer 15 release, we will deploya SUI web app on NCSA accessible to DM team. - work with NCSA to have a server setup - install necessary software packages - install SUI software - deploy the system and test
| 5 |
648 |
DM-3480
|
08/17/2015 17:49:43
|
Design SQL APIs for async queries
|
Need SQL API for: * submitting async query, note that we should be able to specify where the results are going / what is the format of the results * retrieving status of async query * retrieving results of async query * retrieving partial results of async query while it is running
| 2 |
649 |
DM-3481
|
08/18/2015 01:15:48
|
adapt sandbox-jenkins-demo to changes in jfryman/nginx 0.2.7
|
Changes in the way jfryman/nginx 0.2.7 handles tls cert files since 0.2.6 have run awful of selinux permissions issues.
| 2 |
650 |
DM-3483
|
08/18/2015 10:03:56
|
Calibration transformation should not fail on negative flux
|
Before database ingest, measured source fluxes are converted to magnitudes as per DM-2305. The default behaviour of {{afw::image::Calib}} is to throw when a negative flux is encountered, which derails the whole transformation procedure. Better is to return a NaN.
| 0.5 |
651 |
DM-3488
|
08/18/2015 16:12:47
|
Debug problem with large results set
|
Query returning 2 billion rows causes problems for czar - czar is using nearly 16 GB or memory. Need to understand why RAM usage in czar is correlated with result size.
| 1 |
652 |
DM-3490
|
08/18/2015 17:20:21
|
Quick-and-dirty n-way spatial matching
|
This issue will add limited N-way spatial matching of multiple catalogs with identical schemas, sufficient for measuring FY15 KPMs. It will be a simple wrapper on our existing 2-way matching code in afw, and will not be intended for long term use (as it won't be an efficient algorithm or an ideal interrface).
| 2 |
653 |
DM-3491
|
08/18/2015 17:57:47
|
Update ip_diffim to use the new NO_DATA flag instead of EDGE
|
In ip_diffImm some uses of EDGE were converted to or supplemented with NO_DATA, but others were not. This ticket handles the missing instances.
| 1 |
654 |
DM-3492
|
08/18/2015 22:20:19
|
Correct for distortion in matchOptimisticB astrometry matcher
|
matchOptimisticB does not correct for distortion, although an estimate of the distortion is available. We suspect that doing the matching on the celestial sphere might be ideal, but matching on a tangent plane has worked for HSC.
| 5 |
655 |
DM-3493
|
08/18/2015 22:36:13
|
Fix crosstalk following ds9 interface changes
|
crosstalk.py in obs_subaru uses ds9 without actually displaying anything, which causes trouble if display_ds9 is not setup.
| 1 |
656 |
DM-3506
|
08/19/2015 12:46:55
|
W16 Support Dynamic CSS Metadata in Czar
|
Czar needs to support dynamic CSS metadata. This epic involves reworking Facade and related code so that czar can have up to date CSS metadata (per query) instead of relying on static snapshots
| 40 |
657 |
DM-3522
|
08/21/2015 13:07:41
|
Releasing un-acquired resources bug
|
Running a mix of queries: 75 low volume and 10 high volume that include near neighbor failed at some point with {quote} terminate called after throwing an instance of 'lsst::qserv::Bug' what(): ChunkResource ChunkEntry::release: Error releasing un-acquired resource {quote} Stack trace: {quote} #0 0x00007fb6b0cce5e9 in raise () from /lib64/libc.so.6 Missing separate debuginfos, use: debuginfo-install expat-2.1.0-8.el7.x86_64 glibc-2.17-78.el7.x86_64 keyutils-libs-1.5.8-3.el7.x86_64 krb5-libs-1.12.2-14.el7.x86_64 libcom_err-1.42.9-7.el7.x86_64 libgcc-4.8.3-9.el7.x86_64 libicu-50.1.2-11.el7.x86_64 libselinux-2.2.2-6.el7.x86_64 libstdc++-4.8.3-9.el7.x86_64 nss-softokn-freebl-3.16.2.3-9.el7.x86_64 openssl-libs-1.0.1e-42.el7_1.9.x86_64 pcre-8.32-14.el7.x86_64 xz-libs-5.1.2-9alpha.el7.x86_64 zlib-1.2.7-13.el7.x86_64 (gdb) where #0 0x00007fb6b0cce5e9 in raise () from /lib64/libc.so.6 #1 0x00007fb6b0ccfcf8 in abort () from /lib64/libc.so.6 #2 0x00007fb6b15d29b5 in __gnu_cxx::__verbose_terminate_handler() () from /lib64/libstdc++.so.6 #3 0x00007fb6b15d0926 in ?? () from /lib64/libstdc++.so.6 #4 0x00007fb6b15cf8e9 in ?? () from /lib64/libstdc++.so.6 #5 0x00007fb6b15d0554 in __gxx_personality_v0 () from /lib64/libstdc++.so.6 #6 0x00007fb6b1069913 in ?? () from /lib64/libgcc_s.so.1 #7 0x00007fb6b1069e47 in _Unwind_Resume () from /lib64/libgcc_s.so.1 #8 0x00007fb6ab554247 in lsst::qserv::wdb::ChunkResourceMgr::Impl::release (this=0x21d1cc0, i=...) at build/wdb/ChunkResource.cc:398 #9 0x00007fb6ab552696 in lsst::qserv::wdb::ChunkResource::~ChunkResource (this=0x7fb68a5f9b70, __in_chrg=<optimized out>) at build/wdb/ChunkResource.cc:131 #10 0x00007fb6ab560f0f in lsst::qserv::wdb::QueryAction::Impl::_dispatchChannel (this=0x7fb65848c4d0) at build/wdb/QueryAction.cc:392 #11 0x00007fb6ab55f5ab in lsst::qserv::wdb::QueryAction::Impl::act (this=0x7fb65848c4d0) at build/wdb/QueryAction.cc:187 #12 0x00007fb6ab562084 in lsst::qserv::wdb::QueryAction::operator() (this=0x7fb658050548) at build/wdb/QueryAction.cc:450 #13 0x00007fb6ab544f46 in lsst::qserv::wcontrol::ForemanImpl::Runner::operator() (this=0x7fb67400fa20) at build/wcontrol/Foreman.cc:302 #14 0x00007fb6ab551cf0 in std::_Bind_simple<lsst::qserv::wcontrol::ForemanImpl::Runner ()>::_M_invoke<>(std::_Index_tuple<>) ( this=0x7fb67400fa20) at /usr/include/c++/4.8.2/functional:1732 #15 0x00007fb6ab551a8b in std::_Bind_simple<lsst::qserv::wcontrol::ForemanImpl::Runner ()>::operator()() (this=0x7fb67400fa20) at /usr/include/c++/4.8.2/functional:1720 {quote} Tail of log file from xrootd log: {quote} 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG GroupSched (build/wsched/GroupScheduler.cc:139) - _getNextTasks(1)>->-> 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG GroupSched (build/wsched/GroupScheduler.cc:151) - Returning 1 to launch 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG GroupSched (build/wsched/GroupScheduler.cc:154) - _getNextTasks <<<<< 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG ScanSched (build/wsched/ScanScheduler.cc:172) - _getNextTasks(29)>->-> 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG ScanSched (build/wsched/ChunkDisk.cc:199) - ChunkDisk busyness: yes 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG ScanSched (build/wsched/ChunkDisk.cc:171) - ChunkDisk getNext: current= (scan=10436, cached=8360,8259,) candidate=10301 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG ScanSched (build/wsched/ChunkDisk.cc:184) - ChunkDisk denying task 0821 19:08:58.530 [0x7fb68a6fb700] DEBUG ScanSched (build/wsched/ScanScheduler.cc:196) - _getNextTasks <<<<< 0821 19:08:58.531 [0x7fb68a6fb700] INFO root (build/xrdsvc/SsiSession.cc:120) - Enqueued TaskMsg for Resource(/chk/LSST/2732) in 0.001016 seconds 0821 19:08:58.531 [0x7fb6895f8700] DEBUG Foreman (build/wcontrol/Foreman.cc:175) - Registered runner 0x7fb66c141ab0 0821 19:08:58.531 [0x7fb6895f8700] DEBUG Foreman (build/wcontrol/Foreman.cc:209) - Started task Task: msg: session=434445 chunk=2732 db=LSST entry time= frag: q=SELECT o.deepSourceId,o.ra,o.decl,s.coord_ra,s.coord_decl,s.parent FROM LSST.Object_2732 AS o,LSST.Source_2732 AS s WHERE scisql_s2PtInBox(o.ra,o.decl,48.482655,-54.274507,48.555903,-54.196952)=1 AND scisql_s2PtInBox(s.coord_ra,s.coord_decl,48.482655,-54.274507,48.555903,-54.196952)=1 AND o.deepSourceId=s.objectId, sc= rt=r_4344458c9456ede5cbe0b5f42e1a1571d5dd73_2732_0 0821 19:08:58.531 [0x7fb6895f8700] INFO Foreman (build/wcontrol/Foreman.cc:296) - Runner running Task: msg: session=434445 chunk=2732 db=LSST entry time= frag: q=SELECT o.deepSourceId,o.ra,o.decl,s.coord_ra,s.coord_decl,s.parent FROM LSST.Object_2732 AS o,LSST.Source_2732 AS s WHERE scisql_s2PtInBox(o.ra,o.decl,48.482655,-54.274507,48.555903,-54.196952)=1 AND scisql_s2PtInBox(s.coord_ra,s.coord_decl,48.482655,-54.274507,48.555903,-54.196952)=1 AND o.deepSourceId=s.objectId, sc= rt=r_4344458c9456ede5cbe0b5f42e1a1571d5dd73_2732_0 0821 19:08:58.531 [0x7fb6895f8700] INFO Foreman (build/wdb/QueryAction.cc:177) - Exec in flight for Db = q_fd51ad249f62fb765e173d7b3cae5d94 0821 19:08:58.531 [0x7fb6895f8700] WARN Foreman (build/wdb/QueryAction.cc:109) - QueryAction overriding dbName with LSST 0821 19:08:58.718 [0x7fb6a0d8e700] INFO root (build/wdb/QueryAction.cc:261) - &&& _fillRows size=106 0821 19:08:58.718 [0x7fb6a0d8e700] INFO root (build/wdb/QueryAction.cc:261) - &&& _fillRows size=210 0821 19:08:58.718 [0x7fb6a0d8e700] INFO root (build/wdb/QueryAction.cc:261) - &&& _fillRows size=316 ...(thousands of _fillRows lines) terminate called after throwing an instance of 'lsst::qserv::Bug' what(): ChunkResource ChunkEntry::release: Error releasing un-acquired resource {quote}
| 3 |
658 |
DM-3544
|
08/25/2015 08:57:38
|
Cleanup of initial astrometry improvements
|
The astrometry improvements are working, but some cleanup would be good to remove dependencies on A.net and to provide default reference catalog loaders.
| 20 |
659 |
DM-3546
|
08/25/2015 11:37:05
|
Move LDM-151 to Sphinx/Read the Docs
|
Move the LDM-151 (DM applications design document) to restructuredText (built with Sphinx) and published automatically via readthedocs.org. See discussion at http://community.lsst.org/t/requesting-comments-for-design-documentation-format-for-dm/132?u=jsick This is an experiment.
| 1 |
660 |
DM-3555
|
08/25/2015 22:47:09
|
Ignore "SELECT @@tx_isolation" queries
|
Looks like one of the queries we registered in webserv is: cursor.execute('SELECT @@tx_isolation') and that is bound to confuse Qserv. Need to suppress it at mysql proxy level.
| 1 |
661 |
DM-3558
|
08/26/2015 00:21:36
|
Experiment with Jupyter widget technology and Firefly Tools
|
Based on DM-2047 work to date, investigate the feasibility of using the Jupyter widget interface to wrap up Firefly tools.
| 8 |
662 |
DM-3587
|
08/27/2015 11:02:40
|
Firefly infrastructure improvement to support new functions (W16)
|
This epic will capture the necessary changes of Firefly infrastructure to support new functions needed. It does not include the changes caused by the the conversion from GWT infrastructure to pure JavaScript based system using React and FLUX platform.
| 40 |
663 |
DM-3593
|
08/27/2015 14:55:12
|
Firefly support for pipeline visualization needs (W16)
|
Data products pipeline needs visualization capabilities for display. Firefly needs to have new capabilities to support it.
| 40 |
664 |
DM-3596
|
08/27/2015 15:34:33
|
More bug fixes in Firefly JS code
|
Bug fixes and improvements for Firefly JS code
| 40 |
665 |
DM-3608
|
08/27/2015 18:02:57
|
provide detailed information needed to DAX meta API
|
SUIT needs certain specific information through DAX meta service when searching for meta data. For Example, what kind of table it is, does it have spatial index to search by position, which set of (ra, dec) columns is the primary one, etc?
| 1 |
666 |
DM-3609
|
08/27/2015 18:06:42
|
The Alert subscription system requirement gathering (F16)
|
Solidify the requirement for the alert subscription system. Nov. 2, 2016 XW After much discussion with AP team and the re-plan exercise, the requirement for alert subscription has been identified as the following: *use the API that AP team will provide to* # provide a UI for user to specify the filters on alerts of their interests, the destination of the alert to be sent # save the specification in a DB # provide UI to allow users to make modification of the filters and destinations of alerts # possibly to annotate the alerts and allow user to access the annotation This will involve SLAC for DB, NCSA for user management
| 8 |
667 |
DM-3610
|
08/27/2015 18:11:05
|
CCB review and posting of final updated document
|
Carry out the CCB review, respond to questions, support final implementation of updated document.
| 2 |
668 |
DM-3611
|
08/27/2015 18:18:02
|
Prepare for Winter 2016 work on LSE-68
|
Use a session at the LSST 2015 all-hands meeting to prepare for LSE-68 work in the Winter 2016 cycle.
| 3 |
669 |
DM-3615
|
08/27/2015 18:33:15
|
expose region overlay on image function through JavaScript API
|
expose region overlay on image function through JavaScript API
| 5 |
670 |
DM-3616
|
08/27/2015 18:35:16
|
Expose image XY readout at cursor point function in JavaScript API
|
Expose image XY readout at cursor point function in JavaScript API
| 2 |
671 |
DM-3618
|
08/27/2015 21:31:16
|
Fix bug related to restarting xrootd in wmgr
|
Changes from DM-2930 are failing integration tests because wmgr is restarting xrootd and now we need to also restart mysqld if xrootd pid changes.
| 1 |
672 |
DM-3630
|
08/28/2015 14:51:26
|
Change root to config in config override files
|
Implement RFC-62 by using {{config}} rather than {{root}} in config override files for the root of the config. Note that I propose not modifying astrometry_net_data configs because those are numerous and hidden. They have their own special loader in LoadAstrometryNetObjectsTask._readIndexFiles which could easily be updated later. if desired. An obvious time to make such a transition would be when overhauling the way this data is unpersisted.
| 2 |
673 |
DM-3638
|
08/28/2015 16:13:14
|
RangeField mis-handles max < min
|
RangeField contains the following bit of code to handle the case that max < min: {code} if min is not None and max is not None and min > max: swap(min, max) {code} This is broken because there is no swap function and if there was it could not work in-place like this. However, rather than replace this with the standard {{min, max = max, min}} I suggest we raise an exception. If max < min then this probably indicates some kind of error or sloppiness that should not be silently ignored. If we insist on swapping the values then at least we should print a warning. The fact that this bug has never been reported strongly suggests that we never do set min > max and thus that an exception will be fine.
| 1 |
674 |
DM-3639
|
08/28/2015 16:24:31
|
OCS-CCS-DAQ-DM teleconference, April 2015
|
Prepare for and attend a half-day teleconference on OCS issues.
| 2 |
675 |
DM-3641
|
08/28/2015 17:06:54
|
Firefly server side extensions using DM stack (F16)
|
Design and implement a control system to extend Firefly server side capabilities using task in DM stack. This will make it easier to use DM stack for customized data processing.
| 40 |
676 |
DM-3642
|
08/28/2015 17:31:38
|
Support OCS revision of LSE-70, LSE-209
|
Support the OCS efforts to update LSE-70 and create a new associated document, LSE-209. Getting current versions of these under change control will allow us to complete a round of work on LSE-72.
| 20 |
677 |
DM-3646
|
08/28/2015 18:03:55
|
LSE-72: OCS-CCS-DAQ-DM workshop, July 2015
|
Work associated with Workshop IV in the series, held at NCSA July 8-10, 2015.
| 2 |
678 |
DM-3648
|
08/28/2015 18:27:24
|
SUIT design document outline
|
SUI/T design document outline.
| 2 |
679 |
DM-3650
|
08/28/2015 18:32:24
|
on-going support to Camera team in UIUC
|
Attend UIUC weekly meeting and give support as needed.
| 2 |
680 |
DM-3651
|
08/28/2015 18:33:15
|
MakeDiscreteSkyMapRunner.__call__ mis-handled returning results
|
{{MakeDiscreteSkyMapRunner.\_\_call\_\_}} will fail if {{self.doReturnResults}} is {{True}} due to trying to reference undefined variables. This is at least approximately a copy of a problem that was fixed in pipe_base {{TaskRunner}}. {{MakeDiscreteSkyMapRunner.\_\_call\_\_}} should be fixed in a similar way, and (like {{TaskRunner}}) changed to return a pipe_base {{Struct}}.
| 2 |
681 |
DM-3652
|
08/28/2015 18:39:31
|
SUIT design document outline
|
Work with Gregory on the SUIT design document outline 1. Requirements flow down, making sure that we design the system satisfying the current requirements. 2. Use cases collection. at least one typical use case in each major science theme 3. Levels of different users ** novice: treat the web portal as a archive to get some information, don't know much about LSST ** novice expert: has some ideas of what special functions they would like, has some knowledge of LSST data ** domain expert: knows LSST data very well and want some special functions ready to use ** savvy expert: knows LSST data very well and like to use API to their own programming 4. functions for all different levels of users 5 system design ** system diagram ** details of the different parts *** Firefly server *** Firefly client *** Firefly server extension *** Firefly JavaScript API *** Firefly Python API *** Firefly Python API, Jupyter notebook, and other Python applications *** workspace and level3 data *** SUI web portal sketch, workflow ** dependency on other capabilities of other institutes 6. development and test plan, timeline 7. deployment plan
| 1 |
682 |
DM-3653
|
08/28/2015 18:40:52
|
SUIT design document outline
|
work with John Rector on SUIT design document outline
| 1 |
683 |
DM-3656
|
08/30/2015 00:31:52
|
Data loader doesn't work for match tables
|
qserv-data-loader.py fails to load match tables: - it does not invoke the correct partitioner executable for them - not all CSS parameters required for match tables are passed down to the CSS update code
| 1 |
684 |
DM-3657
|
08/31/2015 04:04:21
|
Create change request for LSE-75
|
Create a change request for LSE-75, the TCS - to - DM ICD.
| 2 |
685 |
DM-3658
|
08/31/2015 04:14:10
|
Discussions on LSE-75 with Telescope & Site personnel
|
Pursue interactions with Telescope and Site personnel regarding LSE-75, and in particular the issues surrounding calibration data products for the wavefront and guider data analysis pipelines. Covers work through the end of August 2015.
| 3 |
686 |
DM-3659
|
08/31/2015 08:50:41
|
Initial discussions with Patrick Ingraham
|
This story is a catch-all for preliminary conversations about LSE-140 with the new Calibration Instrumentation Scientist, Patrick Ingraham.
| 1 |
687 |
DM-3667
|
08/31/2015 15:38:57
|
PSFEX does not build if PLplot is installed
|
During the configure phase PSFEX checks for the presence of PLplot. If PLplot is found then the build fails (at least on a Mac using homebrew): {code} /bin/sh ../libtool --tag=CC --mode=link clang -g -O2 -I/Users/timj/work/lsstsw/src/psfex/lapack_functions/include -o psfex check.o context.o cplot.o diagnostic.o fft.o field.o field_utils.o fitswcs.o homo.o main.o makeit.o makeit2.o misc.o pca.o prefs.o psf.o sample.o sample_utils.o vignet.o wcs_utils.o xml.o ./fits/libfits.a ./levmar/liblevmar.a ./wcs/libwcs_c.a -L/Users/timj/work/lsstsw/stack/DarwinX86/fftw/3.3.3-1-g8fdba61+da39a3ee5e/lib -lfftw3f -lm -L/Users/timj/work/lsstsw/src/psfex/lapack_functions/lib -llapackstub -lf2c -lm -lplplotd libtool: link: clang -g -O2 -I/Users/timj/work/lsstsw/src/psfex/lapack_functions/include -o psfex check.o context.o cplot.o diagnostic.o fft.o field.o field_utils.o fitswcs.o homo.o main.o makeit.o makeit2.o misc.o pca.o prefs.o psf.o sample.o sample_utils.o vignet.o wcs_utils.o xml.o ./fits/libfits.a ./levmar/liblevmar.a ./wcs/libwcs_c.a -L/Users/timj/work/lsstsw/stack/DarwinX86/fftw/3.3.3-1-g8fdba61+da39a3ee5e/lib /Users/timj/work/lsstsw/stack/DarwinX86/fftw/3.3.3-1-g8fdba61+da39a3ee5e/lib/libfftw3f.dylib -L/Users/timj/work/lsstsw/src/psfex/lapack_functions/lib -llapackstub -lf2c -lm -lplplotd Undefined symbols for architecture x86_64: "_plwid", referenced from: _cplot_drawloccoordgrid in cplot.o _cplot_fwhm in cplot.o _cplot_ellipticity in cplot.o _cplot_moffatresi in cplot.o _cplot_asymresi in cplot.o _cplot_counts in cplot.o _cplot_countfrac in cplot.o ... ld: symbol(s) not found for architecture x86_64 {code} This particular error is caused by PSFEX using a deprecated PLplot API ({{plwid}}) that is not enabled by default and whose name is not translated to {{c_plwid}}. This PLplot change occurred in version 5.9.10 released in 2013. I assume upstream PSFEX has a fix for this. Given that LSST does not need the PLplot functionality I think the simplest fix may well be to disable the test for PLplot in our version. It seems likely that there will be a reasonable number of systems "in the wild" who will have PLplot installed so I'm inclined to think that this should be a blocker for the v11.0 release. If we are lucky people will have all upgraded their PLplot installs to v5.11.0 because in that version PLplot change the name of the library from {{libplplotd}} to {{libplplot}} and PSFEX has hard-wired the former rather than using pkg-config. This results in configure not finding PLplot. I don't think this eventuality is likely though.
| 0.5 |
688 |
DM-3670
|
08/31/2015 19:19:07
|
obs_test needs to override map_camera and std_camera
|
The Butler can't get a camera unless the map_camera and std_camera are defined correctly. In most cases the camera can be built by the map_camera method. In the case of obs_test, the camera is built in the constructor of the Mapper, so std_camera should just return the camera attribute.
| 1 |
689 |
DM-3675
|
08/31/2015 23:42:31
|
Resourcing Verification runs
|
Identify required resources for Verification runs and communicate them to NCSA.
| 2 |
690 |
DM-3678
|
09/01/2015 14:05:01
|
HSC backport: Standalone updates to star object selection
|
This involves pulling over the following standalone (i.e. non-ticket) HSC commits: [Updated star selection algorithm.|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/071fcadc016908a10583c746f0a8e79df2a45ead] [Appropriate config parameter for a unit test of testPsfDetermination.py.|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/e73c5e447ac0b8a71926d3e78fec30aad4beee91] [Remove HSC specific codes.|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/15bb812578531766199e9a1ee41cc707fb3d9873] (Note, the above reverts some unwanted camera-specific clauses added in the first commit. May just squash them to only add the desired features) [ObjectSizeStarSelector: push non-fatal errors to DEBUG level|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/44f75bc60b41c5f77b323a8d9981048ef7e5f3c4] [We don't use focal plane coordinates anywhere, and detector may be None|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/4413db4610e4793727e591f395f5ad8cd0cb6030] [Fixed axis labels|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/67efacaccf8346fdfa1b450617aebabddb2b7ec0] [Improved PSF debugging plots|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/b1bc91ed1538607eb90e070881a82498fd551909] [Worked on star selector|https://github.com/HyperSuprime-Cam/meas_algorithms/commit/6b36f4d757187d30142a7e026754a07ffeb8dea2]
| 1 |
691 |
DM-3679
|
09/01/2015 14:40:40
|
Allow building/publishing components off branches other than master
|
Support of xrootd within the stack is currently complicated by the fact that qserv depends on features that are not available on upstream master (only available on an upstream non-master branch). Since we can currently only publish packages from master, this means that our lsst fork of xrootd cannot be a "pure" fork -- we end up merging/rebasing from an upstream branch, then force-pushing the downstream master. Upstream and downstream xrootd repos thus have completely different branch topologies, labels, etc., and history of master in the lsst fork is being continually rewritten to carry local patches forward. The processes of both adopting upstream changes into the lsst fork and the pushing lsst changes back upstream are cumbersome, confusing, and labor intensive. It is proposed that we extend our tools to allow publishing components from branches other than master. This would allow us to have xrootd for example be a "pure" fork of upstream -- we could then create our own branch based off any upstream branch, carry our downstream patches there, and release off of that. This functionality could be used similarly for any of our current "t&p" components where it would be convenient to track the upstream repo directly and/or carry changes in git instead of in an agglomerated patch file (e.g. when we might want to update frequently and/or contribute general purpose changes back upstream regularly with pr's, etc.)
| 2 |
692 |
DM-3684
|
09/01/2015 16:53:40
|
Release engineering Part Two
|
This epic covers testing and co-ordination work associated with making engineering and official releases, and code to support them. [FE at 70%, JH at 20%, JS at 10%]
| 40 |
693 |
DM-3686
|
09/01/2015 18:04:48
|
Fix PATH and compiler version detection in qserv scons
|
In recently merged DM-3662 compiler version testing was done using OS tools with regular $PATH. This is inconsistent with other scons tools which reset PATH when executing actions. We want to do two things: - propagate PATH to the command execution - Use scons tools to run "$CXX --version" instead of OS tools to keep things consistent
| 1 |
694 |
DM-3689
|
09/02/2015 11:42:37
|
Slack notification of discourse activity
|
It would be nice to have a hipchat channel with notifications of discourse activity. As a power up, perhaps new topics under certain categories, I'm thinking specifically of DM Notifications, could generate posts to select general HC channels -- similar to how RFC notifications are currently handled. A quick google search turns up this plugin for integration: https://github.com/binaryage/discourse-hipchat-plugin
| 0.5 |
695 |
DM-3691
|
09/02/2015 14:01:10
|
CalibrateTask has outdated, incorrect code for handling aperture corrections
|
The CFHT-specific CalibrateTask tries to apply aperture correction once just after measuring it (which is too early) and again later, at the right time. The error probably has no effect on the final results, but it is confusing and needlessly divergent from the standard CalibrateTask. The required changes are small. I plan to test by running [~boutigny]'s CFHT demo.
| 1 |
696 |
DM-3692
|
09/02/2015 16:18:57
|
HSC backport: Allow for some fraction of PSF Candidates to be reserved from the fitting
|
This is a port of the changesets from [HSC-966|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-966]. It provides the ability to reserve some fraction of PSF candidates from the PSF fitting in order to check for overfitting and do cross validation.
| 1 |
697 |
DM-3693
|
09/02/2015 16:25:10
|
HSC backport: allow photometric and astrometric calibrations to be required
|
This is a port of the standalone changesets: [calibrate: make astrometry failures non-fatal|https://github.com/HyperSuprime-Cam/pipe_tasks/commit/e9db5c0dcdca20e8f7ba71f24f8b797e71699352] [fixup! calibrate: make astrometry failures non-fatal|https://github.com/HyperSuprime-Cam/pipe_tasks/commit/c2d89396923f9d589822c043ed8753647e70f3f6] (the above is a fixup, so will likely be squashed) [make failure to match sources non-fatal|https://github.com/HyperSuprime-Cam/pipe_tasks/commit/cf5724b852937cfcef1b71b7a372552011fda670] [calibrate: restore original Wcs after initial astrometry solution|https://github.com/HyperSuprime-Cam/pipe_tasks/commit/ab6cb9e206d0456dc764c5ef78ac80ece937c610] [move CalibrateTask from ProcessImageTask into ProcessCcdTask|https://github.com/HyperSuprime-Cam/pipe_tasks/commit/08a8ec029dd52ac55e47b707a6905df061a40506] [processCoadd: set detection to use the declared variances|https://github.com/HyperSuprime-Cam/pipe_tasks/commit/9e8563fd8d630dad967786387b1f27b6bc7ee039] [adapt to removal of CalibrateTask from ProcessImageTask in pipe_tasks|https://github.com/HyperSuprime-Cam/obs_subaru/commit/52733a7ab1731a15cbb93151851f57cec276f928] and HSC tickets: [HSC-1085: background not saved in processCcd|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-1085] and [HSC-1086: psf - catalog scatter is very large in some coadds|https://hsc-jira.astro.princeton.edu/jira/browse/HSC-1086]
| 2 |
698 |
DM-3694
|
09/03/2015 02:14:05
|
Decrease buildbot frequency
|
Buildbot frequency is now down to two builds, one at 19:42 machine time (NCSA) and one at 1:42. This is to stop people needing buildbot runs to eups publish to have to wait before a CI build, since they are now done on[ https://ci.lsst.codes ]/ Jenkins.
| 1 |
Subsets and Splits
No community queries yet
The top public SQL queries from the community will appear here once available.