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1,699 |
DM-8245
|
11/10/2016 10:46:23
|
Add Image tables, Science_Ccd_Exposure and DeepCoadd, into LSST catalogs search panel
|
- Add image tables, Science_Ccd_Exposure and DeepCoadd, into the item search list. - show DD table if any of the image table is selected for LSSTMetaSearch. - show the image metadata table for LSSTCatalogSearch.
| 1 |
1,700 |
DM-8247
|
11/10/2016 14:18:26
|
Background job management
|
When the searches take long time, the packaging of the data to be downloaded takes long time, Firefly will put them in the background so users can continue to interact with the UI.
| 40 |
1,701 |
DM-8249
|
11/10/2016 14:25:46
|
Alert subscription system requirement gathering
|
to gather requirement and dependencies on other DM teams for Alert subscription system developed by SUIT. After much discussion with AP team and the re-plan exercise, the requirement for alert subscription has been identified as the following: *use the API that AP team will provide to* # provide a UI for user to specify the filters on alerts of their interests, the destination of the alert to be sent # save the specification in a DB # provide UI to allow users to make modification of the filters and destinations of alerts # possibly to annotate the alerts and allow user to access the annotation This will involve SLAC for DB, NCSA for user management
| 8 |
1,702 |
DM-8251
|
11/10/2016 17:08:17
|
Unicode string not being interpreted correctly.
|
The following (running on lsst-qserv-dax01) {code} dataRoot="/datasets/gapon/data/DC_2013/calexps/" butlerPolicy="calexp" ids = id {'filter': u'g', 'field': 694, 'camcol': 4, 'run': 5646} def getImageByIds(self, ids): butler = lsst.daf.persistence.Butler(dataRoot) img = butler.get(butlerPolicy, dataId=ids) return img, butler {code} Results in this error {code} File "/lsst/stack/dax_imgserv/python/lsst/dax/imgserv/locateImage.py", line 286, in getImageByIds img = butler.get(self._butlerPolicy, dataId=ids) File "/lsst/stack/Linux64/daf_persistence/12.1/python/lsst/daf/persistence/butler.py", line 586, in get location = repoData.repo.map(datasetType, dataId) File "/lsst/stack/Linux64/daf_persistence/12.1/python/lsst/daf/persistence/repository.py", line 180, in map loc = self._mapper.map(*args, **kwargs) File "/lsst/stack/Linux64/daf_persistence/12.1/python/lsst/daf/persistence/mapper.py", line 173, in map return func(self.validate(dataId), write) File "/lsst/stack/Linux64/daf_butlerUtils/12.1+1/python/lsst/daf/butlerUtils/cameraMapper.py", line 294, in mapClosure return mapping.map(mapper, dataId, write) File "/lsst/stack/Linux64/daf_butlerUtils/12.1+1/python/lsst/daf/butlerUtils/mapping.py", line 142, in map return ButlerLocation(self.python, self.persistable, self.storage, path, additionalData, mapper) File "/lsst/stack/Linux64/daf_persistence/12.1/python/lsst/daf/persistence/butlerLocation.py", line 62, in __init__ self.additionalData.set(k, v) File "/lsst/stack/Linux64/daf_base/12.1/python/lsst/daf/base/baseLib.py", line 4136, in _PS_setValue return _propertyContainerSet(self, name, value, _PS_typeMenu) File "/lsst/stack/Linux64/daf_base/12.1/python/lsst/daf/base/baseLib.py", line 4098, in _propertyContainerSet raise lsst.pex.exceptions.TypeError("Unknown value type for %s: %s" % (name, t)) TypeError: Unknown value type for filter: <type 'unicode'> {code}
| 0.5 |
1,703 |
DM-8252
|
11/10/2016 17:26:35
|
Add and modify the server side codes to search the LSSTCatalog from Science_Ccd_Exposure and DeepCoadd tables
|
Two tables are added in the LSSTCatalog's UI. Thus, the search processors in the server side need to be updated to reflect the changes in the UI. The following work will be done: * Find out the ra and dec columns based on the table name passed from the UI * Process the constraints passed from the UI and add to the SQL's "where" clause * Re-arrange the codes * Test all four tables to make sure they work for each of the search method except mutli-object. * Add error handling when the search method is not supported * Add error handling when the data type defined in the metadata of the DAX's JSON file is not the same as in the actual datatype in the same JSON file.
| 2 |
1,704 |
DM-8254
|
11/11/2016 11:20:15
|
make butler silently allow compressed files (ending in .gz)
|
Butler needs to allow repositories to contain a mix of compressed files (that end in .gz) and not compressed files, where the policy template does not specify the compressed file extension (gz)
| 1 |
1,705 |
DM-8255
|
11/11/2016 11:27:27
|
Error if CmdLineTask is given an empty rerun folder
|
CmdLineTask gets confused when it's given a rerun folder that already exists but is empty, and resulting in this error message: {code:java} Error: input directory specified by --rerun must have the same mapper as INPUT {code} This happens in use cases similar to what's wanted in RFC-249: a user creates a symlink for a rerun before running the task.
| 1 |
1,706 |
DM-8265
|
11/14/2016 03:42:24
|
xrootd master fails to start
|
Xrootd master crashes with following error message: {code:bash} Plugin loaded unreleased XrdSsiLPI unknown from logging libXrdSsiLog-4.so Config neither ssi.loglib nor ssi.svclib directive specified in /qserv/run/etc/lsp.cf Config '-l@' requires a logmsg callback function but it was found! 161114 10:34:25 208 XrdConfig: Logging plugin initialization failed. {code} This breaks Qserv CI in Travis.
| 3 |
1,707 |
DM-8273
|
11/15/2016 13:09:13
|
Missing newlines in ConfigurableField persistence
|
{{ConfigurableField.save}} uses the Python buffer {{write}} method but doesn't append a newline (it should probably append two for readability). This is leads to a failure to read persisted configs, first noticed in an lsst_py3 Jenkins run of tickets/DM-8230, in meas_modelfit:testMeasureImage.py:103, in {{copy.deepcopy}}. My only guess as to how we haven't noticed this before is that it's somehow not causing a problem in Python 2, and we hadn't tested Python 3 until now.
| 0.5 |
1,708 |
DM-8293
|
11/16/2016 14:39:04
|
Fix travis build for PR
|
Fix travis PR build are broken for unknown reason since a few month
| 2 |
1,709 |
DM-8295
|
11/16/2016 14:41:36
|
Implement ws4py as third-party package installable by eups
|
Following the developer instructions for third-party packages, add the {{ws4py}} package as a third-party package that is installable by eups.
| 2 |
1,710 |
DM-8296
|
11/16/2016 14:44:30
|
Make fork of firefly_client installable by eups
|
To support the afwDisplay backend for Firefly, firefly_client is being added to the stack as a third-party package. To more easily incorporate changes as firefly_client is developed, firefly_client has been forked to the LSST Github org from the Caltech-IPAC org. A branch will be created and the eups tables will be added to it.
| 2 |
1,711 |
DM-8297
|
11/16/2016 15:49:46
|
Add examples to firefly_client repository
|
An examples subdirectory can be added to the firefly_client repository at the top level. It can contain sample Jupyter notebooks. The starting point can be notebooks for the Python API from the firefly repository, where the API was first developed.
| 2 |
1,712 |
DM-8303
|
11/16/2016 19:43:43
|
Use qserv functions instead of scisql function in catalog search processor
|
Need to follow https://github.com/lsst/qserv/blob/master/UserManual.md#spatial-constraints-should-be-expressed-through-our-qserv_areaspec_-functions to use the qserv functions, like qserv_areaspec_box( lonMin DOUBLE PRECISION, # [deg] Minimum longitude angle latMin DOUBLE PRECISION, # [deg] Minimum latitude angle lonMax DOUBLE PRECISION, # [deg] Maximum longitude angle latMax DOUBLE PRECISION # [deg] Maximum latitude angle ) qserv_areaspec_circle( lon DOUBLE PRECISION, # [deg] Circle center longitude lat DOUBLE PRECISION, # [deg] Circle center latitude radius DOUBLE PRECISION # [deg] Circle radius ) qserv_areaspec_ellipse( lon DOUBLE PRECISION, # [deg] Ellipse center longitude lat DOUBLE PRECISION, # [deg] Ellipse center latitude semiMajorAxisAngle DOUBLE PRECISION, # [arcsec] Semi-major axis length semiMinorAxisAngle DOUBLE PRECISION, # [arcsec] Semi-minor axis length positionAngle DOUBLE PRECISION # [deg] Ellipse position angle, east of north ) qserv_areaspec_poly( v1Lon DOUBLE PRECISION, # [deg] Longitude angle of first polygon vertex v1Lat DOUBLE PRECISION, # [deg] Latitude angle of first polygon vertex v2Lon DOUBLE PRECISION, # [deg] Longitude angle of second polygon vertex v2Lat DOUBLE PRECISION, # [deg] Latitude angle of second polygon vertex ... ) See more examples in https://confluence.lsstcorp.org/display/DM/PDAC+sample+queries+and+test+cases
| 1 |
1,713 |
DM-8308
|
11/17/2016 12:44:25
|
Update LSST search panel to work for both catalog and image search
|
update the LSST search panel to work on - catalog table and image table selection - spatial search for either catalog or image search - fix DD table operation bugs including . constraint column entry is not focused - Update status store for LSST search panel - store the status for each catalog.
| 8 |
1,714 |
DM-8309
|
11/17/2016 12:51:52
|
Enable histogram in IRSAViewer
|
The story is about to branch off 'dev' a version of IRSAViewer to have the latest version of Firefly and enable: - histogram feature (simple UI, no binning method options, only column/expression input) Test version should be ready by beginning January. Release plan for end of January.
| 2 |
1,715 |
DM-8311
|
11/17/2016 13:42:29
|
fix broken jenkins jobs that execute on lsst-dev
|
The change of hardware for lsst-dev has broken the {{run-rebuild}} and {{run-publish}} jobs. See: https://community.lsst.org/t/official-release-of-lsst-dev01-and-replacement-of-lsst-dev/1386 There seems to be sort of odd problem with git checkouts: {code:java} ERROR: Error fetching remote repo 'origin' hudson.plugins.git.GitException: Failed to fetch from https://github.com/lsst-sqre/buildbot-scripts.git at hudson.plugins.git.GitSCM.fetchFrom(GitSCM.java:797) at hudson.plugins.git.GitSCM.retrieveChanges(GitSCM.java:1051) at hudson.plugins.git.GitSCM.checkout(GitSCM.java:1082) at org.jenkinsci.plugins.multiplescms.MultiSCM.checkout(MultiSCM.java:143) at hudson.scm.SCM.checkout(SCM.java:495) at hudson.model.AbstractProject.checkout(AbstractProject.java:1269) at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:604) at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86) at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:529) at hudson.model.Run.execute(Run.java:1741) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43) at hudson.model.ResourceController.execute(ResourceController.java:98) at hudson.model.Executor.run(Executor.java:410) Caused by: hudson.plugins.git.GitException: Command "git fetch --tags --progress https://github.com/lsst-sqre/buildbot-scripts.git +refs/heads/*:refs/remotes/origin/* --depth=1" returned status code 128: stdout: stderr: fatal: git fetch-pack: expected shallow list fatal: The remote end hung up unexpectedly {code}
| 0.5 |
1,716 |
DM-8312
|
11/17/2016 17:10:13
|
Values are not kept after switching from one panel tab to another
|
Latest LC viewer doesn't keep the value of the form when switching from one option tab to another. Some of the field value are kept, the other are reset and back to their initial values.
| 1 |
1,717 |
DM-8325
|
11/18/2016 10:20:04
|
Detailed LSST the Docs product monitoring
|
Parse the output of keeper.lsst.codes/products in order to retrieve a list of published products, and monitor the health of those endpoints.
| 5 |
1,718 |
DM-8329
|
11/18/2016 13:35:28
|
terraform deployment for liveness monitoring
|
A basic terraform deployment that setups a VPC, ACLs, an EIP, and route53 entries for {{status.lsst.codes}}.
| 0.5 |
1,719 |
DM-8336
|
11/21/2016 07:01:58
|
Improve Docker image creation
|
qserv/qserv:dev image is based on qserv/qserv:latest and may become huge if former one isn't update on a regular basis. This ticket will allow to create qserv/qserv:dev from scratch to reduce its size.
| 2 |
1,720 |
DM-8350
|
11/21/2016 13:11:40
|
PDAC v2, provide access to WISE/NEOWISE data
|
This epic captures the specific issues for PDAC v2
| 100 |
1,721 |
DM-8355
|
11/22/2016 09:05:26
|
AssembleCcdTask failure with Python 2
|
E.g. when running ip_isr's {{examples/runAssembleTask.py}}: {code} Traceback (most recent call last): File "runAssembleTask.py", line 36, in <module> runAssembler() File "runAssembleTask.py", line 21, in runAssembler assembledExposure = assembleTask.assembleCcd(assemblyInput) File "/scratch/swinbank/ip_isr/python/lsst/ip/isr/assembleCcdTask.py", line 200, in assembleCcd ccd = next(assembleInput.values()).getDetector() TypeError: list object is not an iterator {code} Looks like a bad conversion to Python 3: it assumes that {{dict.values()}} returns an iterator, but in Python 2 it returns a list. Simple (but ugly) fix: {code} --- a/python/lsst/ip/isr/assembleCcdTask.py +++ b/python/lsst/ip/isr/assembleCcdTask.py @@ -197,7 +197,7 @@ class AssembleCcdTask(pipeBase.Task): ccd = None if hasattr(assembleInput, "has_key"): # Get a detector object for this set of amps - ccd = next(assembleInput.values()).getDetector() + ccd = next(iter(assembleInput.values())).getDetector() # Sent a dictionary of input exposures, assume one amp per key keyed on amp name def getNextExposure(amp): {code} Better suggestions welcome. Rather shocking that this wasn't caught by tests. Sufficiently shocking that I'm wondering if I missed something. I suggest that rather than just committing the above tweak, this ticket should include a test which demonstrates that the task actually runs. An easy way to do that might be to simply migrate a slightly modified version of the code from {{examples/}} to {{tests/}}.
| 0.5 |
1,722 |
DM-8356
|
11/22/2016 09:35:32
|
Port ci_hsc to log package
|
Switch from using {{pex_logging}} to {{log}} in {{ci_hsc}}.
| 2 |
1,723 |
DM-8357
|
11/22/2016 09:37:26
|
Port meas_modelfit to log package
|
Switch from using {{pex_logging}} to {{log}} in {{meas_modelfit}}.
| 2 |
1,724 |
DM-8358
|
11/22/2016 09:39:38
|
Port meas_mosaic to log package
|
Switch from using {{pex_logging}} to {{log}} in {{meas_mosaic}}.
| 2 |
1,725 |
DM-8359
|
11/22/2016 09:41:25
|
Port ctrl_pool to log package
|
Remove {{pex_logging}} dependency in {{ctrl_pool}}.
| 2 |
1,726 |
DM-8363
|
11/22/2016 11:32:04
|
Add macro for Pybind11 wrapping of LSST_CONTROL_FIELD
|
The {{LSST_CONTROL_FIELD}} macro defines multiple fields and methods in a Control object's C++ interface, most of which are implementation details hidden from the average programmer. These implementation methods must appear in an object's Python interface for {{pex_config}} to work correctly, but should not be wrapped manually as this would break the abstraction provided by the macro. The simplest solution is to define a macro that adds all elements of an {{LSST_CONTROL_FIELD}} to the appropriate Pybind11 wrapper object. This macro must be defined in {{pex_config}} in a place where it can be included by the wrapper code for any other stack package.
| 2 |
1,727 |
DM-8365
|
11/22/2016 12:33:47
|
deprecate pex_logging
|
With the implementation of RFC-203, {{pex_logging}} is no longer used within {{pipe_tasks}}. Please check if there are project-supported codes that still use pex_logging and need to be ported, update documentations if necessary, and formally deprecate {{pex_logging}}.
| 0.5 |
1,728 |
DM-8372
|
11/22/2016 16:59:06
|
SUIT and Science Platform requirements definition
|
This epic is to finalize the requirements for SUIT and science platform.
| 20 |
1,729 |
DM-8373
|
11/22/2016 17:11:49
|
SUIT requirement from EE
|
make a list of the original SUIT requirement from EE Help with the requirement flowdown
| 2 |
1,730 |
DM-8374
|
11/22/2016 17:17:51
|
Add function for Pybind11 wrapping of PersistableFacade
|
Because pybind11 requires explicit wrapping of each template instantiation, the curiously recurring template pattern is difficult to wrap -- details of which methods need to be wrapped should be centralized in one place, but the instantiations naturally belong to the classes that inherit from the template. The {{PersistableFacade}} interface is an example of the CRTP used by roughly a dozen classes across the stack. It should be wrapped by defining a function in {{afw::table::io}} for creating a pybind11 wrapper, then calling the function when wrapping a class that implements {{PersistableFacade<T>}}.
| 1 |
1,731 |
DM-8375
|
11/22/2016 18:40:58
|
publish SUIT docs
|
We need to publish the documents for JS API, Python API, and Jupyter widgets.
| 40 |
1,732 |
DM-8377
|
11/23/2016 02:50:34
|
Remove tests from Mariadb build
|
mariadb and mariadbclient eups package contains 330 GB of tests binaries/data. This should be removed to have a lighter stack. A mariadb package with test could be added in order to test mariadb install (or this could be performed at build time...). {code} qserv@worker3:/qserv/stack/Linux64/mariadb/10.1.18-1-g0e935dc$ du -skh * 20K COPYING 28K COPYING.LESSER 88K COPYING.thirdparty 4.0K CREDITS 12K EXCEPTIONS-CLIENT 12K INSTALL-BINARY 4.0K README 20K README-wsrep 285M bin 12K data 4.7M include 66M lib 712K man 327M mysql-test 24K scripts 3.0M share 2.8M sql-bench {code}
| 1 |
1,733 |
DM-8387
|
11/23/2016 09:41:14
|
draft requirement of Level 3 and data space
|
write the draft requirement for Level 3, and its relationship with data space and JupyterHub.
| 5 |
1,734 |
DM-8390
|
11/23/2016 10:18:51
|
calibrateTask.py example broken
|
pipe_tasks provides {{examples/calibTask.py}}, which exercises {{CharacterizeImageTask}} and {{CalibrateTask}}. As [reported by Mandeep Gill|https://community.lsst.org/t/problem-running-calibtask-py-example-script-from-pipe-tasks-dir-examples/1426] this currently fails as follows: {code} RuntimeError: No such FITS catalog file: /tigress/HSC/LSST/stack_20160915/Linux64/obs_test/12.1-9-g3e397f1+2/data/input/schema/icSrc.fits {code} In addition to that, the code also attempts to pass a {{VisitInfo}} to an {{ExposureF}} constructor, which fails.
| 1 |
1,735 |
DM-8394
|
11/23/2016 11:32:31
|
Understanding supertask quanta (round 1)
|
Summary of our first discussion with Gregory and K-T which covered few simplest use cases.
| 2 |
1,736 |
DM-8395
|
11/23/2016 11:51:11
|
Review the draft SUIT requirement document
|
Review and give feedback of the draft SUIT requirement document.
| 1 |
1,737 |
DM-8409
|
11/28/2016 11:53:38
|
Feedback issues from firefly API testing
|
These are task taken from [~rhl] comments in DM-7321 that need to be done the the firefly library. They are the issues that are exclusively on the Firefly client/server side. I am also including some comments: * -Putting up an image often generates a small image (zoom=1); a small resize of the window causes a resize.- *(#2)* - _implemented in DM-10948_ * -It'd be nice to have an option for a horizontal layout (cf. ds9) – displays tend to be wider than high, but the firefly (and default ds9) display is higher than wide so you lose image area. *(#3)*- _implemented in DM-10948_ * In the layers display, one layer seems to be the image. Why does it have a colour and a tickbox? *(#5)* DM-13124 * Pixel coords are off by (0.5, 0.5) – the middle of the bottom left pixel should be (0, 0) (i.e. offset by (1, 1) from the fits standard, which assumes fortran-style 1-indexed arrays) *(#7)* DM-13126 * There doesn't seem to be a way to show coordinates allowing for XY0 *(#8)* _I am not sure what this means, i will need more detail_ (DM-13152) * The nice inset detail of the image doesn't show the mask planes *(#11)* DM-13127 * The inset detail isn't always centred on the cursor. E.g. at the lower left corner, if you put the cursor on the LL pixel, that pixel is shown at the LL of the inset, not the centre *(#12)* _I am not sure this behavior is wrong, I need to be convinced_ DM-13128 * Colours for masks appear to be case sensitive (unlike at least most web standards), and illegal colours such as RED are silently ignored *(#13)* DM-13132 * Support a rapid stream of visualization actions, some which come before async actions complete (_from slack discussion_). DM-13131 More notes: * We have talked about make another type of api html entry point that will allow for grid type layout display. We might do this as part of the QA efforts. _*#2* and *#3* implemented in DM-10948_ * *#4, #9, #10* are probably on the python api side or need to be worked on both sides and need other tickets. I will works this out with [~shupe], they need separate tickets * *#6* - -I don't think this is an issue-, _update_ - will solve *#6* as I documented in the comment below. *#1, #14* - already fixed as part of DM-7321 More issues: Fast zooming + restore failed: How to repeat: Catalog search Gaia at m81: Got an coverage image. Image search WISE at m81: The WISE image swapped the Gaia coverage map. When zoomed in fast and all the way till the zoom option panel shows, clicked Restore before closed the zoom option panel, the image got lost and the error message showed: "ZoomOptionsPopup.jsx:52 Uncaught TypeError: Cannot read property 'zoomFactor' of null at getInitialPlotState (ZoomOptionsPopup.jsx:52) at Array. (ZoomOptionsPopup.jsx:87) at dispatch (createStore.js:186) at middleware.js:86 at index.js:85 at index.js:14 at dispatch (applyMiddleware.js:45) at PlotImageTask.js:178 at Object.dispatch (index.js:11) at process (ReduxFlux.js:269) "
| 2 |
1,738 |
DM-8413
|
11/28/2016 14:41:17
|
Add DPDD requirements to LSE-61
|
As part of requirements tracing, go through DPDD, determine where requirements are missing and create new requirements in LSE-61 as required. This will also involve updating some of the existing requirements to match DPDD.
| 20 |
1,739 |
DM-8417
|
11/28/2016 16:29:36
|
Wrap tests that depend on both image and table with pybind11
|
The following tasks depend on both {{afw::image}} and {{afw::table}}. Wrap them. # testApCorrMap.py (enable one skipped test) # testBox.py (add a test for the copy constructor) # testExposureTable.py # testPolygon.py # testTableIO.py # testTableUtils.py # testValidPolygon.py # testVisitInfo.py # testWeather.py
| 8 |
1,740 |
DM-8420
|
11/28/2016 16:56:39
|
Wrap coadd_utils with pybind11
|
May not require any wrapping, if so then this ticket is just for tracking. Otherwise, adjust SP.
| 2 |
1,741 |
DM-8421
|
11/28/2016 16:58:48
|
Wrap pipe_base with pybind11
|
May not require any wrapping, if so then this ticket is just for tracking. Otherwise, adjust SP.
| 0 |
1,742 |
DM-8422
|
11/28/2016 16:59:46
|
Wrap obs_test with pybind11
|
May not require any wrapping, if so then this ticket is just for tracking. Otherwise, adjust SP.
| 1 |
1,743 |
DM-8424
|
11/28/2016 17:02:22
|
Wrap skypix with pybind11
|
May not require any wrapping, if so then this ticket is just for tracking. Otherwise, adjust SP.
| 0 |
1,744 |
DM-8428
|
11/29/2016 04:44:41
|
Add support for container timezone for Debian host.
|
Linux does not provide a standard way to get container timezone
| 1 |
1,745 |
DM-8439
|
11/29/2016 13:46:51
|
Add wrapper on astshim to take point lists
|
Once the new point classes are implemented in DM-1987 this will provide the wrapper on top of astshim to pass them in and get them out both as lists and as single points.
| 20 |
1,746 |
DM-8440
|
11/29/2016 13:49:04
|
Create new Wcs class
|
Create the new flexible AST-backed WCS class. This will be called {{lsst::afw:;geom::SkyWcs}} to indicate that it is a celestial WCS. It will implement most of the methods of the existing {{lsst::afw::image::Wcs}}. It will subclass from {{lsst::afw::geom::Transform<Point2Endpoint, SpherePointEndpoint>}}, because that class already performs the necessary pixel-to-sky transformations. It will include various standard frames to support the LSST pixel convention. Note that this ticket is purely to create the new WCS class. It is not intended to replace usage of the existing WCS class.
| 20 |
1,747 |
DM-8449
|
11/29/2016 17:28:21
|
LSST catalog search panel related bugs
|
fix and update the following LSST catalog search panel issues: - Catalog polygon search doesn't work (wrong parameters passed) - Can not switch to catalog search after image search fails on creating the plot. - shorten the decimal number display on the title of table tab.
| 1 |
1,748 |
DM-8467
|
11/29/2016 18:26:45
|
Wrap lsst_distrib with pybind11
|
This is the new (taking over from DM-6168) top level ticket for gathering all pybind11 wrappers. When this ticket is merged into master the port is complete.
| 0 |
1,749 |
DM-8491
|
11/30/2016 10:29:02
|
Add Psf-matched CTEs and Coadds as independent data products in DRP
|
This ticket will incorporate psf-matched coadds into DRP and include the following: 1) Develop plan for processing Psf-Matched coadds as part of DRP including interface in pipe_tasks commandline tasks, and butler data product naming convention and mapped filesystem paths: https://community.lsst.org/t/who-are-the-stakeholders-for-psf-matched-coadds/1439 2) RFC plan. 3) Add new data products to appropriate mapper files, including getting input on ones with unique file paths like obs_subaru and obs_sdss. 4) Edit command line tasks (currently WarpAndPsfMatch, MakeCoaddTempExp, AssembleCoadd) to treat psf-matched and non-psf-matched coadds as separate entities.
| 8 |
1,750 |
DM-8496
|
11/30/2016 11:27:43
|
DRP LDM-151 updates from Ivezic review
|
Fixes to LDM-151 DRP section in response to [~zivezic]'s comments.
| 2 |
1,751 |
DM-8514
|
11/30/2016 15:22:51
|
Prepare ASTERICS demo
|
Demo will run a set of SQL queries on IN2P3 cluster.
| 5 |
1,752 |
DM-8528
|
12/01/2016 00:54:13
|
Port jointcal to python 3
|
Now that the rest of the stack works with python3 (particularly the obs packages), it's time to bring jointcal into the fold.
| 1 |
1,753 |
DM-8536
|
12/01/2016 11:29:50
|
Add postage stamp transmission/collection to alert_stream
|
DM-7452 extend the sample alert schema to include a postage stamp cutout file. Need to * modify alert_stream repo and Docker images to grab the new alert schema and postage stamp files * modify producers to add ability to encode and transmit stamps (can only be done with encoding) * add a consumer to decode and write stamp (to the local filesystem?)
| 5 |
1,754 |
DM-8537
|
12/01/2016 11:44:03
|
Update container networking in alert_stream to use non-host network
|
Current version of the alert_stream producer/consumer + Kafka broker system (DM-7453 and DM-7454) uses Docker compose and just exposes all ports to the host network. That won't work for scaling up to multiple hosts. Need to replace this with better networking that will work for multiple hosts.
| 5 |
1,755 |
DM-8547
|
12/01/2016 16:06:46
|
Replace print/cout in jointcal with lsst::log
|
Jointcal has a many {{print()}} and {{cout<<}} that clutter up the output. These should be converted to lsst.log levels as appropriate (e.g. most of the python print are probably .info, while many of the cout are .debug)/
| 8 |
1,756 |
DM-8548
|
12/01/2016 16:11:12
|
Add more info in the image title in the triview
|
Currently the image title in the triview has filter name, like u, g, i, ... It would be nice to add more information about the image, say deepCoaddId or scienceCcdExposureId. Trey added: see LsstSdssRequestList.js [LZ 1-4-2017] # For DeepCoadd, Get the baseId from the selected row: baseId = deepCoaddId - deepCoaddId % 8 For each filter, the title is: id = baseId + filterId ( numerical addition here) title = id+"-"+filterName # For science CCD, its id structure is different than deepCoaddId scienceCcdExposureId = run+filterId + field ( string concatenation)
| 1 |
1,757 |
DM-8549
|
12/01/2016 16:14:31
|
jenkins job(s) for sqre-git-snapshot
|
Resulted in two new jenkins jobs: * {{backup/nightly-sqre-github-snapshot}} - a "cron" job that runs nightly, executing the snapshot process from inside a container * {{backup/build-sqre-github-snapshot}} - builds the docker container used by {{backup/nightly-sqre-github-snapshot}}. Containers are pushed to https://hub.docker.com/r/lsstsqre/sqre-github-snapshot/
| 2 |
1,758 |
DM-8553
|
12/01/2016 17:38:34
|
Write jointcal photometry test for cfht
|
Once I have the tests in place for twinkles, write a similar jointcal photometry test for cfht. This would be the time to replace the currently-broken validation_data_jointcal/cfht data with one updated to have VisitInfo.
| 8 |
1,759 |
DM-8556
|
12/01/2016 17:59:56
|
Rename validation_data_jointcal to testdata_jointcal
|
"validation_data_jointcal" is really "testdata_jointcal" and should be named accordingly, before jointcal becomes a stack dependency. Then all the test data I'm using can live there and we won't need optional dependencies on really large data sets (which are always installed by lsst distrib and lsstsw).
| 1 |
1,760 |
DM-8561
|
12/02/2016 09:49:35
|
Filter null measurements in post-qa
|
{{validate_base}} allows measurements to be {{None}} if they failed, though SQUASH doesn't accept null measurement values. # have post-qa filter out null measurements before posting to SQUASH. # move the configuration that decides what metrics to post to the command line, making it easier to change in the future (and disable AM3 for now). # when handling errors, don't print JSON since django actually seems to return an HTML error page.
| 1 |
1,761 |
DM-8566
|
12/02/2016 12:03:15
|
Some fixes to build process
|
This is an action item from [SLAC-IPAC meeting|https://confluence.lsstcorp.org/pages/viewpage.action?spaceKey=~tjohnson&title=Camera+Image+Visualization+meeting+with+IPAC]: - generate pure war (without embedded tomcat) - workaround duplicate nom.tam.fits classes, etc - Add preferIPv4Stack to tomcat env preferIPv4Stack=true is added to setenv.sh file in tomcat. This is done in ife-evn repo. duplicate of ticket https://jira.lsstcorp.org/browse/DM-7706 closing DM-7706.
| 3 |
1,762 |
DM-8571
|
12/02/2016 12:30:16
|
The current search result table tab should be shown immediately
|
In catalog or image search, if the query takes a long time to get the result, the table tab is not shown until the result comes, user still sees the previous search result during waiting. It would be nice to show the current table tab immediately, so user can see that the search is going on. How to repeat the case: Make the first query: target (1,1), cone, 10 arcsec. Then make the second query: same target, cone 1000 arcsec. The second table won't show until the result comes out.
| 2 |
1,763 |
DM-8579
|
12/02/2016 16:50:50
|
Clean up the server side visualization code
|
clean up including: - moved some files our of server/visualize - created a ...server.visaulize.imageretrieve package - remove unused code - clean up some caching to simplify - removed aborting a plot - cleaned up managing plot context - moved the *Commands.java files to .../server/rpc - general cleanup including some java 7 syntax updates and javadocs
| 3 |
1,764 |
DM-8581
|
12/03/2016 11:22:26
|
add python unit test of Citizen
|
As part of tickets/DM-8417 I added a Python unit test of Citizen. [~pschella] would like me to add the same unit test to master.
| 1 |
1,765 |
DM-8586
|
12/05/2016 12:56:44
|
Document policies for making DM talks, publications, etc available on Zenodo (or elsewhere)
|
It's (fairly) well known that DM has a policy of making materials deriving from talks given, papers published, etc by DM members available on [Zenodo|https://zenodo.org/communities/lsst-dm]. But we need some documentation specifying at least: - The details of the policy (what should be made available, who is responsible, etc); - The mechanism (how does one upload to Zenodo, what collections should the upload be added to, etc); - Requirements regarding licensing.
| 2 |
1,766 |
DM-8588
|
12/05/2016 13:52:56
|
Create DOIs for DMTN-006 and DMTN-021
|
PUB-39 requires DOIs for DMTN-006 and DMTN-021. For now, these DOIs are prepared manually since we haven't engineering a technote release process yet.
| 0.5 |
1,767 |
DM-8590
|
12/05/2016 14:26:57
|
Remove cat dependency in ctrl_stats
|
Remove dependency on the "cat" package in ctrl_stats
| 8 |
1,768 |
DM-8591
|
12/05/2016 15:01:58
|
Follow-up pybind11 behavior with numpy.int64s as indices in Python 3
|
DM-8557 introduced a workaround for an issue seen in afw's multiMatch module where a numpy.int64 could not be used as an index by SWIG under Python 3. This ticket is to see if pybind11 has a similar issue under Python 3, and introduce a fix if so. Suggested procedure to diagnose the numpy.int64 as index issue is: # Revert commit in afw from DM-8557 called "Cast catalog indices to int as SWIG Py3 workaround" # See if the afw test {{tests/testTableMultiMatch.py}} runs.
| 2 |
1,769 |
DM-8594
|
12/05/2016 17:43:30
|
Attend Camera visualization weekly meeting
|
Attend the Camera visualization weekly meeting, act as the point of contact the UIUC team, bring back the requests and bug reports to Firefly team.
| 2 |
1,770 |
DM-8598
|
12/06/2016 16:16:21
|
Dispatch TBL_RESULTS_ACTIVE when table is removed
|
If i have 2 or more tables and i switch from one to another, the xy plot gets updated correctly. Now, if i close one table, the next table gets active but the plot doesn't refresh/update and fails to show the xy plot of the active table. Please check and fix. -------------------- TG 12/7/2016 The bug is fixed in dev by adding TABLE_REMOVE to syncChartViewer saga in ChartsSync.js However, Loi thinks TBL_RESULTS_ACTIVE should be dispatched when a table is removed. To test this ticket, delete TABLE_REMOVE from ChartsSync.js:syncChartViewer saga - the charts should be still in sync with the table when a table is removed.
| 2 |
1,771 |
DM-8604
|
12/07/2016 13:02:17
|
document the issues rising out of SUIT but needs DM attention
|
There are several issues rising out of SUIT requirement and design discussions. Those issues affect SUIT but need DM management attention. This ticket is an attempt to make a list of those issues and ask DM management/architecture team to address them.
| 5 |
1,772 |
DM-8605
|
12/07/2016 15:14:05
|
problems setting log level in Python unit tests
|
Example: meas_algorithms/tests/testMeasure.py In the past, I could simply change [this line|https://github.com/lsst/meas_algorithms/blob/c33f9c998fe5757b14474aa91ccf447ead665f6f/tests/testMeasure.py#L45] to {{Log.getLogger("measurement").setLevel(Log.DEBUG)}} and then running the test would show the DEBUG log messages. But that no longer works since DM-7955. I think this is because: DM-7150 added a hard-coded log configuration, using {{lsst.log.configure_prop()}}, to the initialization code of Python unit tests ({{init()}} in {{utils/tests.py}} ). It was done because the default log configuration at that time was disliked. Later, DM-7955 improved the default config as well as the configuration process in {{log}}, and {{lsst.log.configure_prop()}} now would reset configuration (including resetting all loggers). Customizing the log level of a specific logger on the top of the test file no longer does what users want, because init() resets it (if I understand correctly) So, I'm thinking to remove the log re-configuring in utils; in other words. revert DM-7150.
| 1 |
1,773 |
DM-8606
|
12/07/2016 16:38:19
|
Improve call signature for makeCameraPoint
|
{{Detector::makeCameraPoint}} accepts arguments {{(geom::Point2D point, CameraSys cameraSys)}} instead of {{(geom::Point2D point const &, CameraSys cameraSys const &)}} and similarly for the {{CameraSysPrefix}} overload. This should be fixed. Note that it will require a matching change in the pybind11 wrapper. Also {{Detector::makeCameraSys}} returns a {{CameraSys const}} but there is no need for the {{const}} because {{CameraSys}} is immutable. This work should not be done until after we switch to pybind11. It's too minor to require changing sooner and would needlessly complicated the pybind11 transition.
| 0.5 |
1,774 |
DM-8610
|
12/08/2016 14:37:11
|
Use more secure way to pass password to mysql
|
Implementation of `db.utils.loadSqlScript()` runs mysql command and passes password as command line argument which is not very secure. We want better way to pass credentials to mysql, special protected defaults file is probably the best choice.
| 2 |
1,775 |
DM-8619
|
12/09/2016 12:56:36
|
Enable testWarper.py with pybind11
|
Wrap as much code as needed to make {{testWarper.py}} and {{testWarpExposure.py}} work and enable that test.
| 3 |
1,776 |
DM-8626
|
12/09/2016 17:42:27
|
ConfigDictField cannot handle unicode keys in py2
|
Trying to use a unicode string as a key in a ConfigDictField causes a type error in Python 2. Unfortunately unicode is difficult to avoid with pybind11. I suggest trying to auto-cast such keys to str if the key is string-like and the type doesn't match the expected key type.
| 1 |
1,777 |
DM-8629
|
12/10/2016 15:42:20
|
Remove cmsd log message
|
On cc-in2p3 cluster (ccqserv123) next message appears in xrootd-console.log: {code} [2016-12-10T23:37:28.298+0100] [LWP:275] INFO xrdssi.msgs (cmsd:0) - Meter: Insufficient space; 7GB available < 11GB high watermark {code} Maybe next lst.cf directive should be moved to global: {code} # Specify that no significant free space is required on servers # Indeed current configuration doesn't expect to be dynamically # written to, but export the space in R/W mode cms.space 1k 2k {code}
| 2 |
1,778 |
DM-8630
|
12/11/2016 14:39:59
|
/ssd/lsstsw/stack not updating on lsst-dev01
|
Last weekly available is {{w_2016_48}}. Judging by the logs, builds have been failing since 29 November. Error is: {code} ***** error: from /ssd/lsstsw/stack/EupsBuildDir/Linux64/daf_persistence-12.1-15-gaf6b168/build.log: buildConfig(["doc/doxygen.conf"], ["doc/doxygen.conf.in"]) doxygen /ssd/lsstsw/stack/EupsBuildDir/Linux64/daf_persistence-12.1-15-gaf6b168/daf_persistence-12.1-15-gaf6b168/doc/doxygen.conf /ssd/lsstsw/stack/EupsBuildDir/Linux64/daf_persistence-12.1-15-gaf6b168/daf_persistence-12.1-15-gaf6b168/src/DbStorageImpl.cc:192: warning: argument 'am' of command @param is not found in the argument list of lsst::daf::persistence::DbStorageImpl::startSession(std::string const &location) DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/tests"], ["tests"]) Install file: "ups/eupspkg" as "/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/eupspkg" Install file: "ups/daf_persistence.cfg" as "/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/daf_persistence.cfg" Install file: "ups/daf_persistence.build" as "/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/daf_persistence.build" DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/include"], ["include"]) DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/lib"], ["lib"]) DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/policy"], ["policy"])DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/python"], ["python"])Install file: "ups/daf_persistence.table" as "/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/daf_persistence.table" DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/src"], ["src"]) eups expandbuild -i --version 12.1-15-gaf6b168 /ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/daf_persistence.build DirectoryInstaller(["/ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/doc"], ["doc"]) eups expandtable -i -W '^(?!LOCAL:)' /ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/daf_persistence.table eups expandtable: Processing /ssd/lsstsw/stack/Linux64/daf_persistence/12.1-15-gaf6b168/ups/daf_persistence.table: Product miniconda2 is a dependency for log 12.1-4-gad3b865+2, but is not setup scons: *** [table] Error 9 scons: building terminated because of errors. + exit -5 eups distrib: Failed to build daf_persistence-12.1-15-gaf6b168.eupspkg: Command: source /ssd/lsstsw/stack/eups/bin/setups.sh; export EUPS_PATH=/ssd/lsstsw/stack; (/ssd/lsstsw/stack/EupsBuildDir/Linux64/daf_persistence-12.1-15-gaf6b168/build.sh) >> /ssd/lsstsw/stack/EupsBuildDir/Linux64/daf_persistence-12.1-15-gaf6b168/build.log 2>&1 4>/ssd/lsstsw/stack/EupsBuildDir/Linux64/daf_persistence-12.1-15-gaf6b168/build.msg exited with code 251 {code}
| 1 |
1,779 |
DM-8642
|
12/12/2016 14:48:05
|
Understanding supertask quanta (round 2)
|
Few random thoughts on quanta to keep record of my misunderstanding.
| 2 |
1,780 |
DM-8645
|
12/12/2016 16:37:59
|
Implement new matcherSourceSelector object for use in matchOptimisticB code. This links to DM-6824.
|
astrometrySourceSelector can not be used alone in matchOptimisticB as it tests for two different criteria depending on if it's matching objects(needs good centroid, is a parent object, has a minimum S/N, valid flux) or returning those objects to astrometry.py(all the previous plus is not saturated, is not interpolated, and is not edge). The new source selector matcherSourceSelector will make former selection, astrometrySourceSelector will make the second test. This ticket extends the work of DM-6824.
| 2 |
1,781 |
DM-8646
|
12/12/2016 17:00:59
|
Update eups build tables in display_firefly
|
To make display_firefly be installable via eups, and with the implementation of its dependencies in DM-8295 and DM-8296, some updates are needed: * Add the firefly_client packages as a dependency in ups/display_firefly.table * Remove the xpa, pex_exceptions and swig parts from ups/display_firefly.cfg * Add the display_firefly repository to etc/repos.yaml in the lsstsw repository
| 1 |
1,782 |
DM-8647
|
12/12/2016 17:49:36
|
Enable autobrief in Doxygen
|
{{AUTOBRIEF}} is turned off by default in our Doxygen configuration. The developers guide https://developer.lsst.io/docs/cpp_docs.html suggests using @brief but the very first example after that omits it and much of our code omits it. I think it should be optional and certainly much of our code reflects that. The proposed fix is set the following to {{YES}} in in `doc/base.inc`: - {{JAVADOC_AUTOBRIEF}} - {{QT_AUTOBRIEF}} We mostly use javadoc style, but there is no harm in supporting both, and some of our code may already use QT style.
| 0.5 |
1,783 |
DM-8648
|
12/12/2016 19:11:10
|
Image viewer incorrectly displays flux unit when loading multiextension FITS file
|
Preparing next release of Herschel image set, Justin is using the IRSAViewer in {{OPS}} to load FITS file _(see attached an example of it that show the problem)_ and has found a problem with the image viewer (readout flux unit is incorrect but other value might be also affected). When the multiextension FITS file attached is loaded, the 3 images are correctly loaded but the unit shown is the one from the last image ({{coverage}}). From the code, debug shows that {code:java}edu.caltech.ipac.firefly.server.visualize.ImagePlotCreator#makeAllNoBand{code} uses NO_BAND as a key, so the {{WebFitsData}} corresponding to each image is overwritten with the last one read. The consequence is FITS values such as CVAL, NAXIS, and others of the ImagePlot might not be correct. In particular, the flux unit is '1' for all images when it should display 'Jy/beam' in the readout. [LZ 1-3-2017] The bug is located at the makeAllNoBand in ImagePlotCreator.java. When the FITS file has multi-extension and the image is not three color image, each image 's band is NO-BAND. The WebFitsData containing flux unit, dataMin, dataMax etc, is read in from the FitsRead and is stored in wfDataMap that is a Map<Band, WebFitsData>. However, the wfDataMap was created outside the for loop. When each WebFitsData is calculated, since the map key=NO_BAND is the same for all the extensions, the value in wfDataMap is replaced by the new value calculated in the loop. When the loop is over, the wfDataMap contains the last calculated wfData, ie., the last extension. Thus, the piArray contains three identical elements. Except the flux unit is wrong, the dataMin, dataMax etc. are wrong as well. {code} ImagePlotInfo piAry[]= new ImagePlotInfo[readAry.length]; FileReadInfo readInfo; Map<Band,WebFitsData> wfDataMap= new LinkedHashMap<Band,WebFitsData>(5); for(int i= 0; (i<readAry.length); i++) { WebFitsData wfData= makeWebFitsData(plot,frGroup, readInfo.getBand(),readInfo.getOriginalFile()); ... wfDataMap.put(Band.NO_BAND,wfData); ... piAry[i]= new ImagePlotInfo(stateAry[i],plot, frGroup,readInfo.getDataDesc(), wfDataMap,fileWriterMap); } return piAry; {code} This block shows the correct wfData calculation for the same input (1250p4106_1342188754_SpirePhoto_L20_PMP500_SPG14.0.fits). {code} _dataMin = -0.11674876511096954 _dataMax = 0.7930733561515808 _fitsFileSize = 1198080 _fluxUnits = "Jy/beam" _beta = 0.03296741879503815 _dataMin = 7.146336138248444E-4 _dataMax = 0.11852526664733887 _fitsFileSize = 1198080 _fluxUnits = "Jy/beam" _beta = 0.0044617014275964454 _dataMin = 0.0 _dataMax = 156.0 _fitsFileSize = 1198080 _fluxUnits = "1" _beta = 1.0 {code} This block shows what the value actually received. {code} _dataMin = 0.0 _dataMax = 156.0 _fitsFileSize = 1198080 _fluxUnits = "1" _beta = 1.0 {code} Since the wfDataMa is to store each WebFitsData, it should be initialized inside the for loop.
| 8 |
1,784 |
DM-8652
|
12/13/2016 12:01:51
|
Wrap afw ds9 test with pybind11
|
Wrap {{testDs9.py}} with pybind11. This was left over from DM-7799 because it didn't really fit there.
| 1 |
1,785 |
DM-8654
|
12/13/2016 17:15:39
|
Policy::names(bool) ignores its argument
|
The method {{names(bool topLevelOnly = false)}} in {{pex::policy::Policy}} does not use its argument, always behaving as if {{topLevelOnly}} were {{true}}. It appears that this bug went undetected because the swig wrapper for {{names(list<string> &, bool, bool)}} masked {{names(bool)}}, preventing it from ever being called from Python code. I propose that the implementation of {{names(bool)}} be changed to share code with {{names(list<string> &, bool, bool)}}, both fixing the immediate problem and preventing inconsistent behavior from calling the wrong overload in the future.
| 1 |
1,786 |
DM-8656
|
12/13/2016 18:38:54
|
meas_astrom tests depend on PyQt4 and Qt4 and break with PyQt5 and Qt5
|
When building meas_astrom with lsstsw using -b option on CentOS7 with gcc 4.8.5 tests break through a dependency on matplotlib. {code} *** error building product meas_astrom. *** exit code = 2 *** log is in /opt/lsstsw/build/meas_astrom/_build.log *** last few lines: ::::: [2016-12-13T22:08:07.868579Z] File "/opt/lsstsw/miniconda/lib/python2 .7/site-packages/matplotlib/backends/backend_qt5.py", line 31, in <module> ::::: [2016-12-13T22:08:07.868617Z] from .qt_compat import QtCore, QtGui, QtWidgets, _getSaveFileName, __version__ ::::: [2016-12-13T22:08:07.868716Z] File "/opt/lsstsw/miniconda/lib/python2 .7/site-packages/matplotlib/backends/qt_compat.py", line 137, in <module> ::::: [2016-12-13T22:08:07.868749Z] from PyQt4 import QtCore, QtGui ::::: [2016-12-13T22:08:07.868763Z] ImportError: No module named PyQt4 ::::: [2016-12-13T22:08:07.868775Z] The following tests failed: ::::: [2016-12-13T22:08:07.869806Z] /opt/lsstsw/build/meas_astrom/tests/.test s/testFitTanSipWcsHighOrder.py.failed ::::: [2016-12-13T22:08:07.869939Z] 1 tests failed ::::: [2016-12-13T22:08:07.870705Z] scons: *** [checkTestStatus] Error 1 ::::: [2016-12-13T22:08:07.875630Z] scons: building terminated because of err ors. {code}
| 1 |
1,787 |
DM-8660
|
12/14/2016 13:00:50
|
Create a Unit Test for Geom class
|
The unit test is needed for Geom class. This class is used for making images. Therefore it is important to make sure it works as it should. Analysis by Lijun: * Add unit test for its public method * Add end to end test for its seven cases so that all methods can be run. * Prepare different input and output data set to test different combinaitons
| 8 |
1,788 |
DM-8661
|
12/14/2016 13:04:34
|
Create a Unit Test for ImageData class
|
To ensure the Firefly works correctly, the unit test for ImageData is needed.
| 8 |
1,789 |
DM-8662
|
12/14/2016 15:57:31
|
Incorrect PYTHONPATH in firefly_client repo
|
The implementation of firefly_client as a third-party package in DM-8296 does not allow the module to be imported. A small change is needed to the PYTHONPATH in the eups table. The problem was missed in development because the module importing was tested in the repository's base directory. It is necessary to change directories before testing that the import works.
| 0.5 |
1,790 |
DM-8667
|
12/15/2016 11:04:39
|
Changes to lsstsw to add ctrl_platform_lsstvc remove old ctrl_platform_* references
|
This work removes the following: ctrl_platform_lsst ctrl_platform_gordon from etc/repos.yaml adds: ctrl_platform_lsstvc to etc/repos.yaml and moves the repos to lsst-dm/legacy_ctrl_platform_lsst lsst-dm/legacy_ctrl_platform_gordon
| 2 |
1,791 |
DM-8676
|
12/15/2016 14:09:23
|
Hide matplotlib imports in meas_algorithms
|
meas_algorithms has several "naked" matplotlib imports that happen at the top level, and thus prevent anything that imports meas_algorithms from subsequently setting the backend. A simple fix is to move those imports into the functions where matplotlib is used, so they only occur if matplotlib is run, and preferably wrap them in try:except and log.warn on any errors. This is a stop-gap until 5790 is properly dealt with.
| 1 |
1,792 |
DM-8678
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12/16/2016 08:56:28
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update jenkins qserv container generation job
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Request from [~fritzm] via slack: "update CI to generate it using following command `./1_build-image.sh -CD`". As jenkins is currently using a fork of the qserv docker scripts with some minor modifications, testing will be required to migrate to the qserv master branch.
| 1 |
1,793 |
DM-8686
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12/16/2016 17:51:06
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Change Child Repo Access to Parent Registries
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Child Repositories need to be able to perform lookups in the sqlite Registry of one or more parent repositories. Old Butler repositories used to find the registry by looking in the current repo, then following the _parent symlink until a registry was found. New Butler repositories do not access their parent repositories directly. The shorter term fix is for butler to pass all of a repo’s parent sqlite registries to a repo (via an ordered list of registry objects, each of which is of course a reference). The butler will use that list, whose order will be 1. a local sqlite registry (if present), 2. all the parent registries in order, and 3. use a PosixRegisry on the local repository. In the case of no results found when searching sqlite registries, butler will verify that the tables specified for the policy are in the registry. If they are, butler will return ‘no results’. If the tables are not in that registry, butler will look in the next registry. (The better/longer term fix is “output registries”, where butler updates a repo-local registry when writing a dataset to a repo, and never does lookups in parent registries.)
| 8 |
1,794 |
DM-8688
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12/16/2016 18:14:54
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testPsfSelectTest fails when run with via "pytest *.py"
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testPsfSelectTest fails when run via {{pytest *.py}} in {{meas_algorithms/tests}}, but passes if run with {{python testPsfSelectTest.py}} or {{pytest testPsfSelectTest.py}}. Sample failing run shown below. I'm betting this is a badly-initialized random seed (e.g. the one on line 45). Including [~vpk24] since it looks like he did the pytest port, and [~sullivan] because he added the new-style test boilerplate at the bottom. {code} $ pytest *.py ============================= test session starts ============================== platform linux2 -- Python 2.7.12, pytest-3.0.4, py-1.4.31, pluggy-0.4.0 rootdir: /home/parejkoj/lsst/lsstsw/build/meas_algorithms/tests, inifile: plugins: cov-2.4.0 collected 147 items testAstrometrySourceSelector.py .......... testBinnedWcs.py ... testCoaddApCorrMap.py ... testCoaddBoundedField.py .... testCoaddPsf.py ........... testCr.py .... testDetection.py ... testExecutables.py ..... testGaussianPsf.py ........... testGaussianPsfFactory.py ..... testHtmIndex.py ......... testInstallGaussianPsf.py ...... testInterp.py ...... testLoadReferenceObjects.py .... testMeasure.py ..... testMeasureApCorr.py .......... testNegative.py ... testPsfAttributes.py ... testPsfCandidate.py ..... testPsfDetermination.py ......... testPsfIO.py ....... testPsfSelectTest.py F... testReadFitsCatalog.py ........ testReadTextCatalog.py ...... testTicket-2986.py ... =================================== FAILURES =================================== ___________________ PsfSelectionTestCase.testDistortedImage ____________________ self = <testPsfSelectTest.PsfSelectionTestCase testMethod=testDistortedImage> def testDistortedImage(self): detector = self.detector psfSigma = 1.5 stars = plantSources(self.x0, self.y0, self.nx, self.ny, self.sky, self.nObj, psfSigma, detector) expos, starXy = stars[0], stars[1] # add some faint round galaxies ... only slightly bigger than the psf gxy = plantSources(self.x0, self.y0, self.nx, self.ny, self.sky, 10, 1.07*psfSigma, detector) mi = expos.getMaskedImage() mi += gxy[0].getMaskedImage() gxyXy = gxy[1] kwid = 15 # int(10*psfSigma) + 1 psf = measAlg.SingleGaussianPsf(kwid, kwid, psfSigma) expos.setPsf(psf) expos.setDetector(detector) ######################## # try without distorter expos.setDetector(self.flatDetector) print("Testing PSF selection *without* distortion") sourceList = self.detectAndMeasure(expos) psfCandidateList = self.starSelector.run(expos, sourceList).psfCandidates ######################## # try with distorter expos.setDetector(self.detector) print("Testing PSF selection *with* distortion") sourceList = self.detectAndMeasure(expos) psfCandidateListCorrected = self.starSelector.run(expos, sourceList).psfCandidates def countObjects(candList): nStar, nGxy = 0, 0 for c in candList: s = c.getSource() x, y = s.getX(), s.getY() for xs, ys in starXy: if abs(x-xs) < 2.0 and abs(y-ys) < 2.0: nStar += 1 for xg, yg in gxyXy: if abs(x-xg) < 2.0 and abs(y-yg) < 2.0: nGxy += 1 return nStar, nGxy nstar, ngxy = countObjects(psfCandidateList) nstarC, ngxyC = countObjects(psfCandidateListCorrected) print("uncorrected nStar, nGxy: ", nstar, "/", len(starXy), " ", ngxy, '/', len(gxyXy)) print("dist-corrected nStar, nGxy: ", nstarC, '/', len(starXy), " ", ngxyC, '/', len(gxyXy)) ######################## # display if display: iDisp = 1 ds9.mtv(expos, frame=iDisp) size = 40 for c in psfCandidateList: s = c.getSource() ixx, iyy, ixy = size*s.getIxx(), size*s.getIyy(), size*s.getIxy() ds9.dot("@:%g,%g,%g" % (ixx, ixy, iyy), s.getX(), s.getY(), frame=iDisp, ctype=ds9.RED) size *= 2.0 for c in psfCandidateListCorrected: s = c.getSource() ixx, iyy, ixy = size*s.getIxx(), size*s.getIyy(), size*s.getIxy() ds9.dot("@:%g,%g,%g" % (ixx, ixy, iyy), s.getX(), s.getY(), frame=iDisp, ctype=ds9.GREEN) # we shouldn't expect to get all available stars without distortion correcting > self.assertLess(nstar, len(starXy)) E AssertionError: 64 not less than 64 testPsfSelectTest.py:452: AssertionError ----------------------------- Captured stdout call ----------------------------- Testing PSF selection *without* distortion Testing PSF selection *with* distortion uncorrected nStar, nGxy: 64 / 64 0 / 9 dist-corrected nStar, nGxy: 64 / 64 0 / 9 ----------------------------- Captured stderr call ----------------------------- sourceDetection INFO: Detected 70 positive sources to 5 sigma. sourceDetection INFO: Resubtracting the background after object detection measurement INFO: Measuring 70 sources (70 parents, 0 children) measurement INFO: Measuring 1 sources (1 parents, 0 children) sourceDetection INFO: Detected 70 positive sources to 5 sigma. sourceDetection INFO: Resubtracting the background after object detection measurement INFO: Measuring 70 sources (70 parents, 0 children) measurement INFO: Measuring 1 sources (1 parents, 0 children) ============================ pytest-warning summary ============================ WC1 /home/parejkoj/lsst/lsstsw/build/meas_algorithms/tests/testGaussianPsfFactory.py cannot collect test class 'TestConfig' because it has a __new__ constructor =========== 1 failed, 146 passed, 1 pytest-warnings in 28.33 seconds =========== {code}
| 1 |
1,795 |
DM-8689
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12/16/2016 18:32:52
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In one place code calls log.warning instead of log.warn
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In one place code from DM-8656 calls {{log.warning}} instead of {{log.warn}}
| 0 |
1,796 |
DM-8691
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12/19/2016 08:52:48
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ConvolvedFluxPlugin should measure even if seeing is small
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The {{ConvolvedFluxPlugin}} currently refuses to measure a source if the target seeing is smaller than the actual seeing. This was a bad choice, as having a potentially-incorrect measurement is more useful than having nothing at all (so long as there's a flag indicating the problem).
| 1 |
1,797 |
DM-8695
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12/19/2016 13:37:11
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Fix dataRef list creation bug introduced in DM-8230
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A bug was introduced in DM-8230 such that the {{dataRef}} was not being appended to the refList in the {{PerTractCcdDataIdContainer}} found in *forcedPhotCcd.py* (resulting in an empty refList). Please fix.
| 1 |
1,798 |
DM-8696
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12/19/2016 16:43:28
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Wrap testTicketDM-433 with pybind11
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Moved here from DM-6297 because it depends on DM-8674 to be merged.
| 1 |
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