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Iterator it = sourceFileData.getChildren().iterator(); | Iterator it = sourceFileData.getClasses().iterator(); | private void dumpClasses(SourceFileData sourceFileData) { Iterator it = sourceFileData.getChildren().iterator(); while (it.hasNext()) { dumpClass((ClassData)it.next()); } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/7f42310aa94d3450acefa63804376619941a31c5/XMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
dumpLines(classData.getChildren()); | dumpLines(classData.getLines()); | private void dumpLines(ClassData classData) { dumpLines(classData.getChildren()); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/7f42310aa94d3450acefa63804376619941a31c5/XMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
Iterator it = projectData.getChildren().iterator(); | Iterator it = projectData.getPackages().iterator(); | private void dumpPackages(ProjectData projectData) { println("<packages>"); increaseIndentation(); Iterator it = projectData.getChildren().iterator(); while (it.hasNext()) { dumpPackage((PackageData)it.next()); } decreaseIndentation(); println("</packages>"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/7f42310aa94d3450acefa63804376619941a31c5/XMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
Iterator it = packageData.getChildren().iterator(); | Iterator it = packageData.getSourceFiles().iterator(); | private void dumpSourceFiles(PackageData packageData) { println("<classes>"); increaseIndentation(); Iterator it = packageData.getChildren().iterator(); while (it.hasNext()) { dumpClasses((SourceFileData)it.next()); } decreaseIndentation(); println("</classes>"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/7f42310aa94d3450acefa63804376619941a31c5/XMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
private void buildPresentation() { control = new RenderingAgtCtrl(this); presentation = new RenderingAgtUIF(control, registry); control.setMenuItemListener(viewItem, RenderingAgtCtrl.R_VISIBLE); viewItem.setEnabled(true); //topFrame.addToDesktop(presentation, TopFrame.PALETTE_LAYER); //presentation.setVisible(true); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/48ceb21f32c6e542cd715e6793af3985deb6cee6/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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if (pxsDims == null) renderingControl.getPixelsDims(); | ChannelData[] getChannelData() { if (pxsDims == null) renderingControl.getPixelsDims(); if (channelData == null) channelData = new ChannelData[pxsDims.sizeW]; for (int i = 0; i < pxsDims.sizeW; i++) channelData[i] = new ChannelData(i, i, "Wavelenth "+i); return channelData; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/48ceb21f32c6e542cd715e6793af3985deb6cee6/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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if (pxsDims == null) renderingControl.getPixelsDims(); if (pxsStats == null) renderingControl.getPixelsStats(); | PixelsStatsEntry[] getChannelStats(int w) { if (pxsDims == null) renderingControl.getPixelsDims(); if (pxsStats == null) renderingControl.getPixelsStats(); PixelsStatsEntry[] channelStats = new PixelsStatsEntry[pxsDims.sizeT]; for (int t = 0; t < pxsDims.sizeT; t++) channelStats[t] = pxsStats.getEntry(w, t); return channelStats; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/48ceb21f32c6e542cd715e6793af3985deb6cee6/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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if (pxsStats == null) renderingControl.getPixelsStats(); | double getGlobalChannelWindowEnd(int w) { if (pxsStats == null) renderingControl.getPixelsStats(); return pxsStats.getGlobalEntry(w).globalMax; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/48ceb21f32c6e542cd715e6793af3985deb6cee6/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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if (pxsStats == null) renderingControl.getPixelsStats(); | double getGlobalChannelWindowStart(int w) { if (pxsStats == null) renderingControl.getPixelsStats(); return pxsStats.getGlobalEntry(w).globalMin; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/48ceb21f32c6e542cd715e6793af3985deb6cee6/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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pxsDims = renderingControl.getPixelsDims(); pxsStats = renderingControl.getPixelsStats(); | private void handleImageLoaded(ImageLoaded response) { LoadImage request = (LoadImage) response.getACT(); renderingControl = response.getProxy(); buildPresentation(); curImageID = request.getImageID(); curPixelsID = request.getPixelsID(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/48ceb21f32c6e542cd715e6793af3985deb6cee6/RenderingAgt.java/clean/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgt.java |
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{ this.abstraction = abstraction; renderersPool = new HashMap(); im = IconManager.getInstance(abstraction.getRegistry()); } | { this.abstraction = abstraction; renderersPool = new HashMap(); im = IconManager.getInstance(abstraction.getRegistry()); } | RenderingAgtCtrl(RenderingAgt abstraction) { this.abstraction = abstraction; //displayed = false; renderersPool = new HashMap(); im = IconManager.getInstance(abstraction.getRegistry()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
{ super("Rendering "+name); this.registry = registry; this.control = control; im = IconManager.getInstance(registry); setJMenuBar(createMenuBar()); initPanes(); buildMappingPanel(); buildGUI(); pack(); } | { super("Rendering "+name); this.registry = registry; this.control = control; im = IconManager.getInstance(registry); setJMenuBar(createMenuBar()); initPanes(); buildMappingPanel(); buildGUI(); pack(); } | RenderingAgtUIF(RenderingAgtCtrl control, Registry registry, String name) { super("Rendering "+name); this.registry = registry; this.control = control; im = IconManager.getInstance(registry); setJMenuBar(createMenuBar()); initPanes(); buildMappingPanel(); buildGUI(); pack(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtUIF.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtUIF.java |
{ item.setActionCommand(""+id); item.addActionListener(this); } | { item.setActionCommand(""+id); item.addActionListener(this); } | void setMenuItemListener(JMenuItem item, int id) { item.setActionCommand(""+id); item.addActionListener(this); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/RenderingAgtCtrl.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/RenderingAgtCtrl.java |
if (argsNode.getBlockArgNode() != null && ruby.isBlockGiven()) { RubyProc optionalBlockArg = RubyProc.newProc(ruby, ruby.getClasses().getProcClass()); | if (optionalBlockArg != null) { | final public RubyObject call(final Ruby ruby, final RubyObject receiver, final String name, RubyObject[] args, final boolean noSuper) { ruby.getScope().push(); Namespace savedNamespace = null; savedNamespace = ruby.getNamespace(); ruby.setNamespace(namespace); ruby.getCurrentFrame().setNamespace(namespace); if (body.getLocalNames() != null) { ruby.getScope().setLocalNames(body.getLocalNames()); } RubyVarmap.push(ruby); try { if (argsNode != null) { prepareArguments(ruby, receiver, args); } if (argsNode.getBlockArgNode() != null && ruby.isBlockGiven()) { RubyProc optionalBlockArg = RubyProc.newProc(ruby, ruby.getClasses().getProcClass()); ruby.getScope().setValue(argsNode.getBlockArgNode().getCount(), optionalBlockArg); } traceCall(ruby, receiver, name); return receiver.eval(body.getBodyNode()); } catch (ReturnException re) { return re.getReturnValue(); } finally { RubyVarmap.pop(ruby); ruby.getScope().pop(); ruby.setNamespace(savedNamespace); traceReturn(ruby, receiver, name); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/df4677fd33d50b5fcf367f40d093046797be366f/DefaultMethod.java/clean/org/jruby/internal/runtime/methods/DefaultMethod.java |
return argsCount; | return arguments == null ? 0 : arguments.size(); | public int getArgsCount() { return argsCount; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ArgsNode.java/buggy/src/org/jruby/ast/ArgsNode.java |
RubyObject rubyRecv = JavaUtil.convertJavaToRuby(ruby, recv); | RubyObject rubyRecv = recv != null ? JavaUtil.convertJavaToRuby(ruby, recv) : ruby.getRubyTopSelf(); | public Object call(Object recv, String method, Object[] args) throws BSFException { try { RubyObject rubyRecv = JavaUtil.convertJavaToRuby(ruby, recv); RubyObject[] rubyArgs = new RubyObject[args.length]; for (int i = args.length; i >= 0; i--) { rubyArgs[i] = JavaUtil.convertJavaToRuby(ruby, args[i]); } RubyObject result = rubyRecv.funcall(method, rubyArgs); return JavaUtil.convertRubyToJava(ruby, result, Object.class); } catch (Exception excptn) { throw new BSFException(BSFException.REASON_EXECUTION_ERROR, "Exception", excptn); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/JRubyEngine.java/buggy/org/jruby/javasupport/bsf/JRubyEngine.java |
RubyObject[] rubyArgs = new RubyObject[args.length]; for (int i = args.length; i >= 0; i--) { rubyArgs[i] = JavaUtil.convertJavaToRuby(ruby, args[i]); } | RubyObject[] rubyArgs = JavaUtil.convertJavaArrayToRuby(ruby, args); | public Object call(Object recv, String method, Object[] args) throws BSFException { try { RubyObject rubyRecv = JavaUtil.convertJavaToRuby(ruby, recv); RubyObject[] rubyArgs = new RubyObject[args.length]; for (int i = args.length; i >= 0; i--) { rubyArgs[i] = JavaUtil.convertJavaToRuby(ruby, args[i]); } RubyObject result = rubyRecv.funcall(method, rubyArgs); return JavaUtil.convertRubyToJava(ruby, result, Object.class); } catch (Exception excptn) { throw new BSFException(BSFException.REASON_EXECUTION_ERROR, "Exception", excptn); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/JRubyEngine.java/buggy/org/jruby/javasupport/bsf/JRubyEngine.java |
throw new BSFException(BSFException.REASON_EXECUTION_ERROR, "Exception", excptn); | ruby.printException(excptn); throw new BSFException(BSFException.REASON_EXECUTION_ERROR, excptn.getMessage(), excptn); | public Object call(Object recv, String method, Object[] args) throws BSFException { try { RubyObject rubyRecv = JavaUtil.convertJavaToRuby(ruby, recv); RubyObject[] rubyArgs = new RubyObject[args.length]; for (int i = args.length; i >= 0; i--) { rubyArgs[i] = JavaUtil.convertJavaToRuby(ruby, args[i]); } RubyObject result = rubyRecv.funcall(method, rubyArgs); return JavaUtil.convertRubyToJava(ruby, result, Object.class); } catch (Exception excptn) { throw new BSFException(BSFException.REASON_EXECUTION_ERROR, "Exception", excptn); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/JRubyEngine.java/buggy/org/jruby/javasupport/bsf/JRubyEngine.java |
metadataManagerName = ServiceName.createName(":j2eeType=MetadataManager"); List metadataProviders = new ArrayList(2); metadataProviders.add(new GeronimoMetadataProvider()); metadataProviders.add(new PropertiesMetadataProvider()); metadataManager = new SimpleMetadataManager(metadataProviders); kernel.loadService(metadataManagerName, new StaticServiceFactory(metadataManager), classLoader); kernel.startService(metadataManagerName); | public KernelBridge(String kernelName) { try { ClassLoader classLoader = getClass().getClassLoader(); // normally we would use the KernelFactory, but geronimo will only work with the simple kernel kernel = new SimpleKernel(kernelName); dependencyManagerBridge = new DependencyManagerBridge(kernel.getDependencyManager()); serviceInvokerManagerName = ServiceName.createName(":j2eeType=ServiceInvokerManager,name=default"); serviceInvokerManager = new ServiceInvokerManager(kernel); serviceInvokerManager.start(); kernel.loadService(serviceInvokerManagerName, new StaticServiceFactory(serviceInvokerManager), classLoader); kernel.startService(serviceInvokerManagerName); proxyManagerName = ServiceName.createName(":j2eeType=ProxyManager,name=default"); proxyManager = new ProxyManager(serviceInvokerManager); kernel.loadService(proxyManagerName, new StaticServiceFactory(proxyManager), classLoader); kernel.startService(proxyManagerName); lifecycleMonitorBridge = new LifecycleMonitorBridge(kernel); this.proxyManagerBridge = new ProxyManagerBridge(proxyManager); } catch (Exception e) { throw new org.apache.geronimo.kernel.InternalKernelException(e); } } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
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public org.apache.geronimo.gbean.GBeanData getGBeanData(ObjectName name) throws org.apache.geronimo.kernel.GBeanNotFoundException{ ServiceFactory serviceFactory = getServiceFactory(name); | public org.apache.geronimo.gbean.GBeanData getGBeanData(ObjectName objectName) throws org.apache.geronimo.kernel.GBeanNotFoundException{ ServiceFactory serviceFactory = getServiceFactory(objectName); | public org.apache.geronimo.gbean.GBeanData getGBeanData(ObjectName name) throws org.apache.geronimo.kernel.GBeanNotFoundException{ ServiceFactory serviceFactory = getServiceFactory(name); if (serviceFactory instanceof GeronimoServiceFactory) { GeronimoServiceFactory geronimoServiceFactory = null; geronimoServiceFactory = (GeronimoServiceFactory) serviceFactory; return GeronimoUtil.createGBeanData(geronimoServiceFactory.getGBeanDefinition()); } return createGBeanData(name); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
return GeronimoUtil.createGBeanData(geronimoServiceFactory.getGBeanDefinition()); | return GeronimoUtil.createGBeanData(objectName, geronimoServiceFactory); | public org.apache.geronimo.gbean.GBeanData getGBeanData(ObjectName name) throws org.apache.geronimo.kernel.GBeanNotFoundException{ ServiceFactory serviceFactory = getServiceFactory(name); if (serviceFactory instanceof GeronimoServiceFactory) { GeronimoServiceFactory geronimoServiceFactory = null; geronimoServiceFactory = (GeronimoServiceFactory) serviceFactory; return GeronimoUtil.createGBeanData(geronimoServiceFactory.getGBeanDefinition()); } return createGBeanData(name); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
return createGBeanData(name); | return createGBeanData(objectName); | public org.apache.geronimo.gbean.GBeanData getGBeanData(ObjectName name) throws org.apache.geronimo.kernel.GBeanNotFoundException{ ServiceFactory serviceFactory = getServiceFactory(name); if (serviceFactory instanceof GeronimoServiceFactory) { GeronimoServiceFactory geronimoServiceFactory = null; geronimoServiceFactory = (GeronimoServiceFactory) serviceFactory; return GeronimoUtil.createGBeanData(geronimoServiceFactory.getGBeanDefinition()); } return createGBeanData(name); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
return GeronimoUtil.createGBeanInfo(geronimoServiceFactory.getGBeanDefinition()); | return GeronimoUtil.createGBeanInfo(geronimoServiceFactory); | public org.apache.geronimo.gbean.GBeanInfo getGBeanInfo(ObjectName name) throws org.apache.geronimo.kernel.GBeanNotFoundException { ServiceFactory serviceFactory = getServiceFactory(name); if (serviceFactory instanceof GeronimoServiceFactory) { GeronimoServiceFactory geronimoServiceFactory = (GeronimoServiceFactory) serviceFactory; return GeronimoUtil.createGBeanInfo(geronimoServiceFactory.getGBeanDefinition()); } return createGBeanInfo(name); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
GBeanDefinition geronimoBeanDefinition = GeronimoUtil.createGeronimoBeanDefinition(gbeanData, classLoader); GeronimoServiceFactory geronimoServiceFactory = new GeronimoServiceFactory(proxyManager, geronimoBeanDefinition); | GeronimoServiceFactory geronimoServiceFactory = null; try { geronimoServiceFactory =GeronimoUtil.createGeronimoServiceFactory(gbeanData, classLoader, metadataManager, proxyManager); } catch (Exception e) { throw new org.apache.geronimo.kernel.InternalKernelException(e); } | public void loadGBean(org.apache.geronimo.gbean.GBeanData gbeanData, ClassLoader classLoader) throws org.apache.geronimo.kernel.GBeanAlreadyExistsException { ObjectName objectName = gbeanData.getName(); GBeanDefinition geronimoBeanDefinition = GeronimoUtil.createGeronimoBeanDefinition(gbeanData, classLoader); GeronimoServiceFactory geronimoServiceFactory = new GeronimoServiceFactory(proxyManager, geronimoBeanDefinition); try { kernel.loadService(objectName, geronimoServiceFactory, classLoader); } catch (ServiceAlreadyExistsException e) { throw new org.apache.geronimo.kernel.GBeanAlreadyExistsException(e); } } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
try { kernel.stopService(metadataManagerName); kernel.unloadService(metadataManagerName); } catch (ServiceNotFoundException e) { } | public void shutdown() { try { kernel.stopService(proxyManagerName); kernel.unloadService(proxyManagerName); } catch (ServiceNotFoundException e) { // igore service has already been removed } try { kernel.stopService(serviceInvokerManagerName); kernel.unloadService(serviceInvokerManagerName); serviceInvokerManager.stop(); } catch (ServiceNotFoundException e) { // igore service has already been removed } kernel.shutdown(); synchronized (this) { notify(); } org.apache.geronimo.kernel.KernelRegistry.unregisterKernel(this); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/KernelBridge.java/clean/kernel/src/java/org/gbean/geronimo/KernelBridge.java |
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public static GBeanData createGBeanData(GBeanDefinition gBeanDefinition) { GBeanData gbeanData = new GBeanData(gBeanDefinition.getObjectName(), createGBeanInfo(gBeanDefinition)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(gBeanDefinition.isEnabled())); | public static GBeanData createGBeanData(ObjectName objectName, GeronimoServiceFactory serviceFactory) { RootBeanDefinition beanDefinition = serviceFactory.getBeanDefinition(); Set persistentProperties = serviceFactory.getPersistentProperties(); GBeanData gbeanData = new GBeanData(objectName, createGBeanInfo(serviceFactory)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(serviceFactory.isEnabled())); | public static GBeanData createGBeanData(GBeanDefinition gBeanDefinition) { GBeanData gbeanData = new GBeanData(gBeanDefinition.getObjectName(), createGBeanInfo(gBeanDefinition)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(gBeanDefinition.isEnabled())); // add the normal properties PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; gbeanData.setAttribute(dynamicPropertyValue.getName(), dynamicPropertyValue.getValue()); } // add the constructor arguments for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { int index = ((Integer) entry.getKey()).intValue(); constructorArgName = "constructor-argument-" + index; } gbeanData.setAttribute(constructorArgName, valueHolder.getValue()); } // add the dependencies String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { String dependencyString = dependsOn[i]; Map map = stringToDependency(dependencyString); Map.Entry entry = ((Map.Entry) map.entrySet().iterator().next()); String dependencyName = (String) entry.getKey(); Set patterns = (Set) entry.getValue(); gbeanData.setReferencePatterns(dependencyName, patterns); } return gbeanData; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); | PropertyValue[] properties = beanDefinition.getPropertyValues().getPropertyValues(); | public static GBeanData createGBeanData(GBeanDefinition gBeanDefinition) { GBeanData gbeanData = new GBeanData(gBeanDefinition.getObjectName(), createGBeanInfo(gBeanDefinition)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(gBeanDefinition.isEnabled())); // add the normal properties PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; gbeanData.setAttribute(dynamicPropertyValue.getName(), dynamicPropertyValue.getValue()); } // add the constructor arguments for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { int index = ((Integer) entry.getKey()).intValue(); constructorArgName = "constructor-argument-" + index; } gbeanData.setAttribute(constructorArgName, valueHolder.getValue()); } // add the dependencies String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { String dependencyString = dependsOn[i]; Map map = stringToDependency(dependencyString); Map.Entry entry = ((Map.Entry) map.entrySet().iterator().next()); String dependencyName = (String) entry.getKey(); Set patterns = (Set) entry.getValue(); gbeanData.setReferencePatterns(dependencyName, patterns); } return gbeanData; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); | if (persistentProperties.contains(propertyValue.getName())) { gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); } | public static GBeanData createGBeanData(GBeanDefinition gBeanDefinition) { GBeanData gbeanData = new GBeanData(gBeanDefinition.getObjectName(), createGBeanInfo(gBeanDefinition)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(gBeanDefinition.isEnabled())); // add the normal properties PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; gbeanData.setAttribute(dynamicPropertyValue.getName(), dynamicPropertyValue.getValue()); } // add the constructor arguments for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { int index = ((Integer) entry.getKey()).intValue(); constructorArgName = "constructor-argument-" + index; } gbeanData.setAttribute(constructorArgName, valueHolder.getValue()); } // add the dependencies String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { String dependencyString = dependsOn[i]; Map map = stringToDependency(dependencyString); Map.Entry entry = ((Map.Entry) map.entrySet().iterator().next()); String dependencyName = (String) entry.getKey(); Set patterns = (Set) entry.getValue(); gbeanData.setReferencePatterns(dependencyName, patterns); } return gbeanData; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; gbeanData.setAttribute(dynamicPropertyValue.getName(), dynamicPropertyValue.getValue()); } for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { | for (Iterator iterator = serviceFactory.getDynamicProperties().entrySet().iterator(); iterator.hasNext();) { | public static GBeanData createGBeanData(GBeanDefinition gBeanDefinition) { GBeanData gbeanData = new GBeanData(gBeanDefinition.getObjectName(), createGBeanInfo(gBeanDefinition)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(gBeanDefinition.isEnabled())); // add the normal properties PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; gbeanData.setAttribute(dynamicPropertyValue.getName(), dynamicPropertyValue.getValue()); } // add the constructor arguments for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { int index = ((Integer) entry.getKey()).intValue(); constructorArgName = "constructor-argument-" + index; } gbeanData.setAttribute(constructorArgName, valueHolder.getValue()); } // add the dependencies String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { String dependencyString = dependsOn[i]; Map map = stringToDependency(dependencyString); Map.Entry entry = ((Map.Entry) map.entrySet().iterator().next()); String dependencyName = (String) entry.getKey(); Set patterns = (Set) entry.getValue(); gbeanData.setReferencePatterns(dependencyName, patterns); } return gbeanData; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { int index = ((Integer) entry.getKey()).intValue(); constructorArgName = "constructor-argument-" + index; } gbeanData.setAttribute(constructorArgName, valueHolder.getValue()); } String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { String dependencyString = dependsOn[i]; Map map = stringToDependency(dependencyString); Map.Entry entry = ((Map.Entry) map.entrySet().iterator().next()); String dependencyName = (String) entry.getKey(); Set patterns = (Set) entry.getValue(); gbeanData.setReferencePatterns(dependencyName, patterns); | String propertyName = (String) entry.getKey(); Object propertyValue = entry.getValue(); gbeanData.setAttribute(propertyName, propertyValue); | public static GBeanData createGBeanData(GBeanDefinition gBeanDefinition) { GBeanData gbeanData = new GBeanData(gBeanDefinition.getObjectName(), createGBeanInfo(gBeanDefinition)); gbeanData.setAttribute("gbeanEnabled", Boolean.valueOf(gBeanDefinition.isEnabled())); // add the normal properties PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; gbeanData.setAttribute(propertyValue.getName(), propertyValue.getValue()); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; gbeanData.setAttribute(dynamicPropertyValue.getName(), dynamicPropertyValue.getValue()); } // add the constructor arguments for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { int index = ((Integer) entry.getKey()).intValue(); constructorArgName = "constructor-argument-" + index; } gbeanData.setAttribute(constructorArgName, valueHolder.getValue()); } // add the dependencies String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { String dependencyString = dependsOn[i]; Map map = stringToDependency(dependencyString); Map.Entry entry = ((Map.Entry) map.entrySet().iterator().next()); String dependencyName = (String) entry.getKey(); Set patterns = (Set) entry.getValue(); gbeanData.setReferencePatterns(dependencyName, patterns); } return gbeanData; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { | public static GBeanInfo createGBeanInfo(GeronimoServiceFactory serviceFactory) { RootBeanDefinition beanDefinition = serviceFactory.getBeanDefinition(); Set persistentProperties = serviceFactory.getPersistentProperties(); | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); | PropertyValue[] properties = beanDefinition.getPropertyValues().getPropertyValues(); | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
attributeInfos.add(new GAttributeInfo(propertyValue.getName(), | String propertyName = propertyValue.getName(); attributeInfos.add(new GAttributeInfo(propertyName, | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
true, | persistentProperties.contains(propertyName), | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), | for (Iterator iterator = serviceFactory.getDynamicProperties().keySet().iterator(); iterator.hasNext();) { String propertyName = (String) iterator.next(); attributeInfos.add(new DynamicGAttributeInfo(propertyName, | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), | return new GBeanInfo(beanDefinition.getBeanClassName(), | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
new GConstructorInfo(constructorArgs), | new GConstructorInfo(serviceFactory.getConstructorArgNames()), | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
referenceInfos); | null); | public static GBeanInfo createGBeanInfo(GBeanDefinition gBeanDefinition) { // add the normal properties Set attributeInfos = new HashSet(); PropertyValue[] properties = gBeanDefinition.getPropertyValues().getPropertyValues(); for (int i = 0; i < properties.length; i++) { PropertyValue propertyValue = properties[i]; attributeInfos.add(new GAttributeInfo(propertyValue.getName(), "java.lang.Object", true, null, null)); } // add the dynamic properties PropertyValue[] dynamicProperties = gBeanDefinition.getDynamicPropertyValues().getPropertyValues(); for (int i = 0; i < dynamicProperties.length; i++) { PropertyValue dynamicPropertyValue = dynamicProperties[i]; attributeInfos.add(new DynamicGAttributeInfo(dynamicPropertyValue.getName(), "java.lang.Object", true, true, true)); } // add the constructor arguments int maxIndex = -1; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().keySet().iterator(); iterator.hasNext();) { int index = ((Integer) iterator.next()).intValue(); if (index > maxIndex) maxIndex = index; } String[] constructorArgs = new String[maxIndex + 1]; for (Iterator iterator = gBeanDefinition.getConstructorArgumentValues().getIndexedArgumentValues().entrySet().iterator(); iterator.hasNext();) { Map.Entry entry = (Map.Entry) iterator.next(); int index = ((Integer) entry.getKey()).intValue(); ConstructorArgumentValues.ValueHolder valueHolder = (ConstructorArgumentValues.ValueHolder) entry.getValue(); String constructorArgName; if (valueHolder instanceof NamedValueHolder) { NamedValueHolder namedValueHolder = (NamedValueHolder) valueHolder; constructorArgName = namedValueHolder.getName(); } else { constructorArgName = "constructor-argument-" + index; } attributeInfos.add(new GAttributeInfo(constructorArgName, valueHolder.getType(), true, null, null)); constructorArgs[index] = constructorArgName; } // add the dependencies Set referenceInfos = new HashSet(); String[] dependsOn = gBeanDefinition.getDependsOn(); for (int i = 0; i < dependsOn.length; i++) { Map map = stringToDependency(dependsOn[i]); String dependencyName = (String) map.keySet().iterator().next(); referenceInfos.add(new GReferenceInfo("@" + dependencyName, DependencyOnly.class.getName(), DependencyOnly.class.getName(), null, null)); } return new GBeanInfo(gBeanDefinition.getBeanClassName(), "GBean", attributeInfos, new GConstructorInfo(constructorArgs), Collections.EMPTY_SET, referenceInfos); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/6a661ce4fbc3261ed4b3a744b1e1919df53cbbf7/GeronimoUtil.java/buggy/kernel/src/java/org/gbean/geronimo/GeronimoUtil.java |
public ImagesLoader(HiViewer viewer, Set imagesID) | public ImagesLoader(HiViewer viewer, Set imagesID, boolean refresh) | public ImagesLoader(HiViewer viewer, Set imagesID) { super(viewer); this.imagesID = imagesID; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/ImagesLoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/ImagesLoader.java |
this.refresh = refresh; | public ImagesLoader(HiViewer viewer, Set imagesID) { super(viewer); this.imagesID = imagesID; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/ImagesLoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/ImagesLoader.java |
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viewer.setHierarchyRoots((Set) result, true); | viewer.setHierarchyRoots((Set) result, true, refresh); | public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; viewer.setHierarchyRoots((Set) result, true); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/ImagesLoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/ImagesLoader.java |
public void init() { | public OMEData init() { | public void init() { // Perhaps generalize on type HOW OFTEN IS THIS USED! Each ONCE ? TODO if (!initialized) { allUsers = getAllIds("experimenters", "attribute_id"); allImgs = getAllIds("images", "image_id"); allDss = getAllIds("datasets", "dataset_id"); allPrjs = getAllIds("projects", "project_id"); allCgs = getAllIds("category_groups", "attribute_id"); allCs = getAllIds("categories", "attribute_id"); userId = getOneFromCollection(allUsers); // Perhaps generalize on type HOW OFTEN IS THIS USED! Each ONCE ? prjId = getOneFromCollection(allPrjs); dsId = getOneFromCollection(allDss); cgId = getOneFromCollection(allCgs); cId = getOneFromCollection(allCs); /* * for example. should be done in sub-classes * *imgsPDI = getPercentOfCollection(allImgs, percent); *imgsCGCI = getPercentOfCollection(allImgs, percent); *imgsAnn1 = getPercentOfCollection(allImgs, percent); *imgsAnn2 = getPercentOfCollection(allImgs, percent); *dsAnn1 = getPercentOfCollection(allDss, percent); *dsAnn2 = getPercentOfCollection(allDss, percent); * */ } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2bc67970abd041b6cb8e0252d02a6e27f304bec4/OMEData.java/clean/components/common/src/org/openmicroscopy/omero/tests/OMEData.java |
return this; | public void init() { // Perhaps generalize on type HOW OFTEN IS THIS USED! Each ONCE ? TODO if (!initialized) { allUsers = getAllIds("experimenters", "attribute_id"); allImgs = getAllIds("images", "image_id"); allDss = getAllIds("datasets", "dataset_id"); allPrjs = getAllIds("projects", "project_id"); allCgs = getAllIds("category_groups", "attribute_id"); allCs = getAllIds("categories", "attribute_id"); userId = getOneFromCollection(allUsers); // Perhaps generalize on type HOW OFTEN IS THIS USED! Each ONCE ? prjId = getOneFromCollection(allPrjs); dsId = getOneFromCollection(allDss); cgId = getOneFromCollection(allCgs); cId = getOneFromCollection(allCs); /* * for example. should be done in sub-classes * *imgsPDI = getPercentOfCollection(allImgs, percent); *imgsCGCI = getPercentOfCollection(allImgs, percent); *imgsAnn1 = getPercentOfCollection(allImgs, percent); *imgsAnn2 = getPercentOfCollection(allImgs, percent); *dsAnn1 = getPercentOfCollection(allDss, percent); *dsAnn2 = getPercentOfCollection(allDss, percent); * */ } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2bc67970abd041b6cb8e0252d02a6e27f304bec4/OMEData.java/clean/components/common/src/org/openmicroscopy/omero/tests/OMEData.java |
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return "Thumbnail"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); | return "Thumbnail"+(attributeId==null ? ":Hash_"+this.hashCode() : ":Id_"+attributeId); | public String toString(){ return "Thumbnail"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/Thumbnail.java/buggy/components/common/src/ome/model/Thumbnail.java |
fail("test that row is gone."); | List list = iQuery.getListByFieldEq( DatasetImageLink.class, "child.id", img.getId() ); assertTrue( list.size() == 0 ); | public void testAndHeresHowWeUnlinkThings() throws Exception { // Method 1: saveImage(); List updated = unlinkImage(); iUpdate.saveCollection( updated ); fail("test that row is gone."); // Method 2: saveImage(); updated = unlinkImage(); iPojos.udpateDataObjects( (IObject[]) updated.toArray(new IObject[updated.size()]), null); // Method 3: Dataset d = new Dataset(); Project p = new Project(); p = (Project) iPojos.createDataObject( p, null ); d = (Dataset) iPojos.createDataObject( d, null ); ProjectDatasetLink link = new ProjectDatasetLink(); link.setParent( p ); link.setChild( d ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/PojosServiceTest.java/buggy/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java |
Dataset d = new Dataset(); Project p = new Project(); | Dataset d = new Dataset(); d.setName( "unlinking"); Project p = new Project(); p.setName( "unlinking"); | public void testAndHeresHowWeUnlinkThings() throws Exception { // Method 1: saveImage(); List updated = unlinkImage(); iUpdate.saveCollection( updated ); fail("test that row is gone."); // Method 2: saveImage(); updated = unlinkImage(); iPojos.udpateDataObjects( (IObject[]) updated.toArray(new IObject[updated.size()]), null); // Method 3: Dataset d = new Dataset(); Project p = new Project(); p = (Project) iPojos.createDataObject( p, null ); d = (Dataset) iPojos.createDataObject( d, null ); ProjectDatasetLink link = new ProjectDatasetLink(); link.setParent( p ); link.setChild( d ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/PojosServiceTest.java/buggy/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java |
ds = (Dataset) img.iterateOverDatasetLinks().next(); | ds = (Dataset) img.linkedDatasetIterator().next(); | public void testAndSaveSomtheingWithParents() throws Exception { saveImage(); ds = (Dataset) img.iterateOverDatasetLinks().next(); Long id = ds.getId(); // another copy Image img2 = (Image) iQuery.queryUnique( "select i from Image i " + "left outer join fetch i.datasetLinks " + "where i.id = ?", new Object[]{img.getId()}); assertTrue("It better have a dataset link too", img2.sizeOfDatasetLinks()>0); Dataset ds2 = (Dataset) img2.iterateOverDatasetLinks().next(); assertTrue("And the ids have to be the same",id.equals(ds2.getId())); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/PojosServiceTest.java/buggy/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java |
Dataset ds2 = (Dataset) img2.iterateOverDatasetLinks().next(); | Dataset ds2 = (Dataset) img2.linkedDatasetIterator().next(); | public void testAndSaveSomtheingWithParents() throws Exception { saveImage(); ds = (Dataset) img.iterateOverDatasetLinks().next(); Long id = ds.getId(); // another copy Image img2 = (Image) iQuery.queryUnique( "select i from Image i " + "left outer join fetch i.datasetLinks " + "where i.id = ?", new Object[]{img.getId()}); assertTrue("It better have a dataset link too", img2.sizeOfDatasetLinks()>0); Dataset ds2 = (Dataset) img2.iterateOverDatasetLinks().next(); assertTrue("And the ids have to be the same",id.equals(ds2.getId())); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/PojosServiceTest.java/buggy/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java |
List updated = img.collectFromDatasetLinks( new CBlock() { | List updated = img.eachLinkedDataset( new CBlock() { | private List unlinkImage() { List updated = img.collectFromDatasetLinks( new CBlock() { public Object call(IObject arg0) { img.unlinkDataset( (Dataset) arg0 ); return arg0; } }); updated.add( img ); return updated; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/PojosServiceTest.java/buggy/components/shoola-adapter/test/ome/adapters/pojos/itests/PojosServiceTest.java |
System.err.println("super drag....."); | protected void drag(PInputEvent e) { PNode node = e.getPickedNode(); if (node instanceof ModuleView) { if (linkState != LINKING_MODULES) { ModuleView mod = (ModuleView) node; Dimension2D delta = e.getDeltaRelativeTo(node); mod.translate(delta.getWidth(),delta.getHeight()); e.setHandled(true); } } else if (linkState == LINK_CHANGING_POINT) { Dimension2D delta = e.getDeltaRelativeTo(node); if (node instanceof LinkSelectionTarget) { LinkSelectionTarget target = (LinkSelectionTarget) node; target.translate(delta.getWidth(),delta.getHeight()); } e.setHandled(true); } else if (!(node instanceof FormalParameter) && linkState == NOT_LINKING){ super.drag(e); e.setHandled(true); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e17e7128f66d7890debf64cf01235cd3cf15e683/ChainCreationEventHandler.java/clean/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java |
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System.err.println("mouse dragged..."+e.getPickedNode()); | public void mouseDragged(PInputEvent e) { // System.err.println("CHAIN HANDLER:got a drag event in chain canvas"); mouseMoved(e); super.mouseDragged(e); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e17e7128f66d7890debf64cf01235cd3cf15e683/ChainCreationEventHandler.java/clean/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java |
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super.mousePressed(e); | public void mousePressed(PInputEvent e) { if (e.isPopupTrigger()) { //System.err.println("mouse pressed.."); evaluatePopup(e); return; } PNode node = e.getPickedNode(); //System.err.println("mouse pressed on "+node+", state "+linkState); // clear off what was selected. if (selectedLink != null && linkState != LINK_CHANGING_POINT) { // System.err.println("setting selected link to not be selected, in mousePressed"); selectedLink.setSelected(false); selectedLink = null; } if (selectedModule != null) { selectedModule.removeHandles(); selectedModule = null; } if (selectionTarget != null) { selectionTarget.getLink().setSelected(false); selectionTarget = null; } //first do things based on types of nodes // then do based on state if (node instanceof LinkSelectionTarget) mousePressedSelectionTarget(node); else if (node instanceof Link) mousePressedLink(node); else if (node instanceof ModuleView) mousePressedModule(node); if (linkState == LINKING_PARAMS) mousePressedLinkingParams(node,e); else if (linkState == LINKING_MODULES) mousePressedLinkingModules(node,e); else if (linkState == NOT_LINKING) mousePressedNotLinking(node,e); else if (linkState == LINK_CHANGING_POINT) mousePressedChangingPoint(node,e); else linkState = NOT_LINKING; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e17e7128f66d7890debf64cf01235cd3cf15e683/ChainCreationEventHandler.java/clean/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java |
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else if (node instanceof PCamera){ | else if (node instanceof PCamera){ System.err.println("on camera"); | private void mousePressedLinkingModules(PNode node,PInputEvent e) { int count = e.getClickCount(); if (count ==2) { if (node instanceof FormalParameter) { FormalParameter p = (FormalParameter) node; ModuleView mod = p.getModuleView(); finishModuleLinks(mod); } else if (node instanceof ModuleView) { finishModuleLinks((ModuleView) node); } else cancelModuleLinks(); } else if (node instanceof PCamera){ // single click on camera //when linking modules.. Iterator iter = links.iterator(); Point2D pos = e.getPosition(); ParamLink lnk; int size = links.size(); float y = ((float) pos.getY()) - size/2*SPACING; while (iter.hasNext()) { lnk = (ParamLink) iter.next(); lnk.setIntermediatePoint((float) pos.getX(),y); y += SPACING; } } e.setHandled(true); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e17e7128f66d7890debf64cf01235cd3cf15e683/ChainCreationEventHandler.java/clean/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java |
System.err.println("adding an intermediate point to modules link"); | private void mousePressedLinkingModules(PNode node,PInputEvent e) { int count = e.getClickCount(); if (count ==2) { if (node instanceof FormalParameter) { FormalParameter p = (FormalParameter) node; ModuleView mod = p.getModuleView(); finishModuleLinks(mod); } else if (node instanceof ModuleView) { finishModuleLinks((ModuleView) node); } else cancelModuleLinks(); } else if (node instanceof PCamera){ // single click on camera //when linking modules.. Iterator iter = links.iterator(); Point2D pos = e.getPosition(); ParamLink lnk; int size = links.size(); float y = ((float) pos.getY()) - size/2*SPACING; while (iter.hasNext()) { lnk = (ParamLink) iter.next(); lnk.setIntermediatePoint((float) pos.getX(),y); y += SPACING; } } e.setHandled(true); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e17e7128f66d7890debf64cf01235cd3cf15e683/ChainCreationEventHandler.java/clean/SRC/org/openmicroscopy/shoola/agents/chainbuilder/piccolo/ChainCreationEventHandler.java |
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mode = args[1].convertToString().getValue(); | mode = args[1].convertToString().toString(); | public IRubyObject initialize(IRubyObject[] args) { int count = checkArgumentCount(args, 1, 2); int newFileno = RubyNumeric.fix2int(args[0]); String mode = null; if (count > 1) { mode = args[1].convertToString().getValue(); } // See if we already have this descriptor open. // If so then we can mostly share the handler (keep open // file, but possibly change the mode). IOHandler existingIOHandler = getIOHandlerByFileno(newFileno); if (existingIOHandler == null) { if (mode == null) { mode = "r"; } try { handler = new IOHandlerUnseekable(getRuntime(), newFileno, mode); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } modes = new IOModes(getRuntime(), mode); registerIOHandler(handler); } else { // We are creating a new IO object that shares the same // IOHandler (and fileno). handler = existingIOHandler; // Inherit if no mode specified otherwise create new one modes = mode == null ? handler.getModes() : new IOModes(getRuntime(), mode); // Reset file based on modes. try { handler.reset(modes); } catch (IOHandler.InvalidValueException e) { throw getRuntime().newErrnoEINVALError(); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } } return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyIO.java/buggy/src/org/jruby/RubyIO.java |
String separator = sepVal.isNil() ? null : ((RubyString) sepVal).getValue(); | String separator = sepVal.isNil() ? null : ((RubyString) sepVal).toString(); | public IRubyObject internalGets(IRubyObject[] args) { checkReadable(); IRubyObject sepVal = getRuntime().getGlobalVariables().get("$/"); if (args.length > 0) { sepVal = args[0]; } String separator = sepVal.isNil() ? null : ((RubyString) sepVal).getValue(); if (separator != null && separator.length() == 0) { separator = IOHandler.PARAGRAPH_DELIMETER; } try { String newLine = handler.gets(separator); if (newLine != null) { lineNumber++; getRuntime().getGlobalVariables().set("$.", getRuntime().newFixnum(lineNumber)); RubyString result = getRuntime().newString(newLine); result.taint(); return result; } return getRuntime().getNil(); } catch (IOHandler.BadDescriptorException e) { throw getRuntime().newErrnoEBADFError(); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyIO.java/buggy/src/org/jruby/RubyIO.java |
String path = ((RubyString) args[0]).getValue(); | String path = ((RubyString) args[0]).toString(); | public IRubyObject reopen(IRubyObject[] args) { if (args.length < 1) { throw getRuntime().newArgumentError("wrong number of arguments"); } if (args[0].isKindOf(getRuntime().getClass("IO"))) { RubyIO ios = (RubyIO) args[0]; int keepFileno = handler.getFileno(); // close the old handler before it gets overwritten if (handler.isOpen()) { try { handler.close(); } catch (IOHandler.BadDescriptorException e) { throw getRuntime().newErrnoEBADFError(); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } } // When we reopen, we want our fileno to be preserved even // though we have a new IOHandler. // Note: When we clone we get a new fileno...then we replace it. // This ends up incrementing our fileno index up, which makes the // fileno we choose different from ruby. Since this seems a bit // too implementation specific, I did not bother trying to get // these to agree (what scary code would depend on fileno generating // a particular way?) try { handler = ios.handler.cloneIOHandler(); } catch (IOHandler.InvalidValueException e) { throw getRuntime().newErrnoEINVALError(); } catch (IOHandler.PipeException e) { throw getRuntime().newErrnoESPIPEError(); } catch (FileNotFoundException e) { throw getRuntime().newErrnoENOENTError(); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } handler.setFileno(keepFileno); // Update fileno list with our new handler registerIOHandler(handler); } else if (args[0].isKindOf(getRuntime().getClass("String"))) { String path = ((RubyString) args[0]).getValue(); String mode = "r"; if (args.length > 1) { if (!args[1].isKindOf(getRuntime().getClass("String"))) { throw getRuntime().newTypeError(args[1], getRuntime().getClass("String")); } mode = ((RubyString) args[1]).getValue(); } try { if (handler != null) { close(); } modes = new IOModes(getRuntime(), mode); handler = new IOHandlerSeekable(getRuntime(), path, modes); registerIOHandler(handler); } catch (IOHandler.InvalidValueException e) { throw getRuntime().newErrnoEINVALError(); } catch (IOException e) { throw getRuntime().newIOError(e.toString()); } } // A potentially previously close IO is being 'reopened'. isOpen = true; return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyIO.java/buggy/src/org/jruby/RubyIO.java |
mode = ((RubyString) args[1]).getValue(); | mode = ((RubyString) args[1]).toString(); | public IRubyObject reopen(IRubyObject[] args) { if (args.length < 1) { throw getRuntime().newArgumentError("wrong number of arguments"); } if (args[0].isKindOf(getRuntime().getClass("IO"))) { RubyIO ios = (RubyIO) args[0]; int keepFileno = handler.getFileno(); // close the old handler before it gets overwritten if (handler.isOpen()) { try { handler.close(); } catch (IOHandler.BadDescriptorException e) { throw getRuntime().newErrnoEBADFError(); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } } // When we reopen, we want our fileno to be preserved even // though we have a new IOHandler. // Note: When we clone we get a new fileno...then we replace it. // This ends up incrementing our fileno index up, which makes the // fileno we choose different from ruby. Since this seems a bit // too implementation specific, I did not bother trying to get // these to agree (what scary code would depend on fileno generating // a particular way?) try { handler = ios.handler.cloneIOHandler(); } catch (IOHandler.InvalidValueException e) { throw getRuntime().newErrnoEINVALError(); } catch (IOHandler.PipeException e) { throw getRuntime().newErrnoESPIPEError(); } catch (FileNotFoundException e) { throw getRuntime().newErrnoENOENTError(); } catch (IOException e) { throw getRuntime().newIOError(e.getMessage()); } handler.setFileno(keepFileno); // Update fileno list with our new handler registerIOHandler(handler); } else if (args[0].isKindOf(getRuntime().getClass("String"))) { String path = ((RubyString) args[0]).getValue(); String mode = "r"; if (args.length > 1) { if (!args[1].isKindOf(getRuntime().getClass("String"))) { throw getRuntime().newTypeError(args[1], getRuntime().getClass("String")); } mode = ((RubyString) args[1]).getValue(); } try { if (handler != null) { close(); } modes = new IOModes(getRuntime(), mode); handler = new IOHandlerSeekable(getRuntime(), path, modes); registerIOHandler(handler); } catch (IOHandler.InvalidValueException e) { throw getRuntime().newErrnoEINVALError(); } catch (IOException e) { throw getRuntime().newIOError(e.toString()); } } // A potentially previously close IO is being 'reopened'. isOpen = true; return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9f2efc63a858fa0507245b207025eab027840a04/RubyIO.java/buggy/src/org/jruby/RubyIO.java |
public IOModes(IRuby runtime, String modesString) { this(runtime, convertModesStringToModesInt(runtime, modesString)); | public IOModes(IRuby runtime) { modes = 0; this.runtime = runtime; | public IOModes(IRuby runtime, String modesString) { this(runtime, convertModesStringToModesInt(runtime, modesString)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/24fc00ac9f647542a77f440ea686cea2d209f347/IOModes.java/buggy/src/org/jruby/util/IOModes.java |
public int getc() throws IOException, BadDescriptorException { checkReadable(); int c = read(); if (c == -1) { return c; } return c & 0xff; } | public abstract int getc() throws IOException, BadDescriptorException, EOFException; | public int getc() throws IOException, BadDescriptorException { checkReadable(); int c = read(); if (c == -1) { return c; } return c & 0xff; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public abstract void sync() throws IOException; | public abstract void sync() throws IOException, BadDescriptorException; | public abstract void sync() throws IOException; | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public String gets(String separatorString) throws IOException, BadDescriptorException { checkReadable(); if (separatorString == null) { return getsEntireStream(); } final char[] separator = separatorString.equals(PARAGRAPH_DELIMETER) ? "\n\n".toCharArray() : separatorString.toCharArray(); int c = read(); if (c == -1) { return null; } StringBuffer buffer = new StringBuffer(); LineLoop : while (true) { while (c != separator[0] && c != -1) { buffer.append((char) c); c = read(); } for (int i = 0; i < separator.length; i++) { if (c == -1) { break LineLoop; } else if (c != separator[i]) { continue LineLoop; } buffer.append((char) c); if (i < separator.length - 1) { c = read(); } } break; } if (separatorString.equals(PARAGRAPH_DELIMETER)) { while (c == separator[0]) { c = read(); } ungetc(c); } return buffer.toString(); } | public abstract String gets(String separatorString) throws IOException, BadDescriptorException, EOFException; | public String gets(String separatorString) throws IOException, BadDescriptorException { checkReadable(); if (separatorString == null) { return getsEntireStream(); } final char[] separator = separatorString.equals(PARAGRAPH_DELIMETER) ? "\n\n".toCharArray() : separatorString.toCharArray(); int c = read(); if (c == -1) { return null; } StringBuffer buffer = new StringBuffer(); LineLoop : while (true) { while (c != separator[0] && c != -1) { buffer.append((char) c); c = read(); } for (int i = 0; i < separator.length; i++) { if (c == -1) { break LineLoop; } else if (c != separator[i]) { continue LineLoop; } buffer.append((char) c); if (i < separator.length - 1) { c = read(); } } break; } if (separatorString.equals(PARAGRAPH_DELIMETER)) { while (c == separator[0]) { c = read(); } ungetc(c); } return buffer.toString(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public void putc(int c) throws IOException, BadDescriptorException { try { syswrite("" + (char) c); } catch (IOException e) { } } | public abstract void putc(int c) throws IOException, BadDescriptorException; | public void putc(int c) throws IOException, BadDescriptorException { try { syswrite("" + (char) c); // LAME } catch (IOException e) { } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public String read(int number) throws IOException, BadDescriptorException { try { if (ungotc >= 0) { String buf2 = sysread(number - 1); int c = ungotc; ungotc = -1; return c + buf2; } return sysread(number); } catch (EOFException e) { return null; } } | public abstract String read(int number) throws IOException, BadDescriptorException, EOFException; | public String read(int number) throws IOException, BadDescriptorException { try { if (ungotc >= 0) { String buf2 = sysread(number - 1); int c = ungotc; ungotc = -1; return c + buf2; } return sysread(number); } catch (EOFException e) { return null; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public String getsEntireStream() throws IOException { StringBuffer result = new StringBuffer(); int c; while ((c = read()) != -1) { result.append((char) c); } if (result.length() == 0) { return null; } return result.toString(); } | public abstract String getsEntireStream() throws IOException, BadDescriptorException, EOFException; | public String getsEntireStream() throws IOException { StringBuffer result = new StringBuffer(); int c; while ((c = read()) != -1) { result.append((char) c); } // We are already at EOF if (result.length() == 0) { return null; } return result.toString(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
NormalizedFile theFile = (NormalizedFile)new NormalizedFile(path).getAbsoluteFile(); | NormalizedFile theFile = new NormalizedFile(path); if (!theFile.isAbsolute()) { theFile = (NormalizedFile)new NormalizedFile(getRuntime().getCurrentDirectory(), path).getAbsoluteFile(); } | public IOHandlerSeekable(IRuby runtime, String path, IOModes modes) throws IOException, InvalidValueException { super(runtime); this.path = path; this.modes = modes; NormalizedFile theFile = (NormalizedFile)new NormalizedFile(path).getAbsoluteFile(); if (theFile.exists()) { if (modes.shouldTruncate()) { // If we only want to open for writing we should remove // the old file before opening the fresh one. If it fails // to remove it we should do something? if (!theFile.delete()) { } } } else { if (modes.isReadable() && !modes.isWriteable()) { throw new FileNotFoundException(); } } // Do not open as 'rw' if we don't need to since a file with permissions for read-only // will barf if opened 'rw'. String javaMode = "r"; if (modes.isWriteable()) { javaMode += "w"; } // We always open this rw since we can only open it r or rw. file = new RandomAccessFile(theFile, javaMode); isOpen = true; if (modes.isAppendable()) { seek(0, SEEK_END); } // We give a fileno last so that we do not consume these when // we have a problem opening a file. fileno = RubyIO.getNewFileno(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/295cdd11472f7ae4b0426336dc7cdcabe946fdc1/IOHandlerSeekable.java/buggy/src/org/jruby/util/IOHandlerSeekable.java |
public String sysread(int number) throws IOException, BadDescriptorException { if (!isOpen()) { throw new IOException("File not open"); } checkReadable(); StringBuffer buf = new StringBuffer(); int position = 0; while (position < number) { int s = sysread(buf, number - position); if (s == -1) { if (position <= 0) { throw new EOFException(); } break; } position += s; } return buf.toString(); } | public abstract String sysread(int number) throws IOException, BadDescriptorException, EOFException; | public String sysread(int number) throws IOException, BadDescriptorException { if (!isOpen()) { throw new IOException("File not open"); } checkReadable(); StringBuffer buf = new StringBuffer(); int position = 0; while (position < number) { int s = sysread(buf, number - position); if (s == -1) { if (position <= 0) { throw new EOFException(); } break; } position += s; } return buf.toString(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public void ungetc(int c) { if (c >= 0) { ungotc = c; } } | public abstract void ungetc(int c); | public void ungetc(int c) { // Ruby silently ignores negative ints for some reason? if (c >= 0) { ungotc = c; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
public int write(String string) throws IOException, BadDescriptorException { return syswrite(string); } | public abstract int write(String string) throws IOException, BadDescriptorException; | public int write(String string) throws IOException, BadDescriptorException { return syswrite(string); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/54e6b8da799629e0b7db879c45149399878f5f84/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); | try { BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); } catch(IllegalArgumentException iae) { System.err.println("illegal width:["+iX+","+iEX+",0," +iW+"]"); iae.printStackTrace(); } | public BrowserInternalFrame(BrowserController theController) { setSize(600,600); setDefaultCloseOperation(JInternalFrame.DISPOSE_ON_CLOSE); if(theController != null) { this.controller = theController; String title = controller.getName(); setTitle("Image Browser: "+title); this.embeddedView = controller.getView(); embeddedView.setZoomToScale(true); this.env = BrowserEnvironment.getInstance(); } setJMenuBar(new BrowserMenuBar(theController.getBrowserModel())); JPanel toolbarPanel = new JPanel(); toolbarPanel.setLayout(new FlowLayout(FlowLayout.LEFT)); IconManager manager = env.getIconManager(); JButton optionsButton = new JButton(manager.getSmallIcon(IconManager.OPTIONS_BAR)); optionsButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { controller.getOverlayModel().showPalette(UIConstants.OPTIONS_PALETTE_NAME); } }); optionsButton.setToolTipText("Show Options Menu"); toolbarPanel.add(optionsButton); toolbarPanel.add(new JSeparator(JSeparator.HORIZONTAL)); ZoomButtonPanel panel = new ZoomButtonPanel(embeddedView); toolbarPanel.add(panel); Container container = getContentPane(); container.setLayout(new BorderLayout()); final JScrollBar horizontalBar = new JScrollBar(JScrollBar.HORIZONTAL); final JScrollBar verticalBar = new JScrollBar(JScrollBar.VERTICAL); embeddedView.getViewCamera().addCameraListener(new CameraListener() { /* (non-Javadoc) * @see org.openmicroscopy.shoola.agents.browser.ui.CameraListener#cameraBoundsChanged(double, double, double, double, double, double) */ public void cameraBoundsChanged(double valueX, double valueY, double extentX, double extentY, double width, double height) { int iX = (int)Math.round(valueX); int iY = (int)Math.round(valueY); int iEX = (int)Math.round(extentX); int iEY = (int)Math.round(extentY); int iW = (int)Math.round(width); int iH = (int)Math.round(height); BoundedRangeModel horizModel = horizontalBar.getModel(); BoundedRangeModel vertModel = verticalBar.getModel(); if(iEX+iX > iW) horizontalBar.setEnabled(false); else { horizontalBar.setEnabled(true); if(iW != horizModel.getMaximum() || iEX != horizModel.getExtent()) { BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); } else { horizModel.setValue(iX); } } if(iEY+iY > iH) verticalBar.setEnabled(false); else { verticalBar.setEnabled(true); if(iH != vertModel.getMaximum() || iEY != vertModel.getExtent()) { BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); } else { vertModel.setValue(iY); } } } }); horizontalBar.setEnabled(false); horizontalBar.setModel(new DefaultBoundedRangeModel(0,0,0,0)); horizontalBar.addAdjustmentListener(new AdjustmentListener() { public void adjustmentValueChanged(AdjustmentEvent e) { int value = e.getValue(); embeddedView.getViewCamera().setX(value); } }); verticalBar.setEnabled(false); verticalBar.setModel(new DefaultBoundedRangeModel(0,0,0,0)); verticalBar.addAdjustmentListener(new AdjustmentListener() { public void adjustmentValueChanged(AdjustmentEvent e) { int value = e.getValue(); embeddedView.getViewCamera().setY(value); } }); JPanel fakeScrollPane = new JPanel(); JPanel verticalPanel = new JPanel(); verticalPanel.setLayout(new BorderLayout()); verticalPanel.add(embeddedView,BorderLayout.CENTER); verticalPanel.add(verticalBar,BorderLayout.EAST); JPanel horizontalPanel = new JPanel(); horizontalPanel.setLayout(new BorderLayout()); horizontalPanel.add(horizontalBar,BorderLayout.CENTER); horizontalPanel.add(Box.createHorizontalStrut(verticalBar.getPreferredSize().width), BorderLayout.EAST); verticalPanel.add(horizontalPanel,BorderLayout.SOUTH); fakeScrollPane.setLayout(new BorderLayout()); fakeScrollPane.add(verticalPanel,BorderLayout.CENTER); container.add(fakeScrollPane,BorderLayout.CENTER); container.add(toolbarPanel,BorderLayout.NORTH); if(controller.getStatusView() != null) { container.add(controller.getStatusView(),BorderLayout.SOUTH); } this.addFocusListener(new CommonFocusAdapter(this)); final UIWrapper refCopy = this; this.addInternalFrameListener(new InternalFrameAdapter() { /* (non-Javadoc) * @see javax.swing.event.InternalFrameAdapter#internalFrameClosing(javax.swing.event.InternalFrameEvent) */ public void internalFrameClosing(InternalFrameEvent arg0) { env.getBrowserManager().removeBrowser(refCopy); } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/BrowserInternalFrame.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserInternalFrame.java |
BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); | try { BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); } catch(IllegalArgumentException iae) { System.err.println("illegal height:["+iY+","+iEY+",0," +iH+"]"); iae.printStackTrace(); } | public BrowserInternalFrame(BrowserController theController) { setSize(600,600); setDefaultCloseOperation(JInternalFrame.DISPOSE_ON_CLOSE); if(theController != null) { this.controller = theController; String title = controller.getName(); setTitle("Image Browser: "+title); this.embeddedView = controller.getView(); embeddedView.setZoomToScale(true); this.env = BrowserEnvironment.getInstance(); } setJMenuBar(new BrowserMenuBar(theController.getBrowserModel())); JPanel toolbarPanel = new JPanel(); toolbarPanel.setLayout(new FlowLayout(FlowLayout.LEFT)); IconManager manager = env.getIconManager(); JButton optionsButton = new JButton(manager.getSmallIcon(IconManager.OPTIONS_BAR)); optionsButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { controller.getOverlayModel().showPalette(UIConstants.OPTIONS_PALETTE_NAME); } }); optionsButton.setToolTipText("Show Options Menu"); toolbarPanel.add(optionsButton); toolbarPanel.add(new JSeparator(JSeparator.HORIZONTAL)); ZoomButtonPanel panel = new ZoomButtonPanel(embeddedView); toolbarPanel.add(panel); Container container = getContentPane(); container.setLayout(new BorderLayout()); final JScrollBar horizontalBar = new JScrollBar(JScrollBar.HORIZONTAL); final JScrollBar verticalBar = new JScrollBar(JScrollBar.VERTICAL); embeddedView.getViewCamera().addCameraListener(new CameraListener() { /* (non-Javadoc) * @see org.openmicroscopy.shoola.agents.browser.ui.CameraListener#cameraBoundsChanged(double, double, double, double, double, double) */ public void cameraBoundsChanged(double valueX, double valueY, double extentX, double extentY, double width, double height) { int iX = (int)Math.round(valueX); int iY = (int)Math.round(valueY); int iEX = (int)Math.round(extentX); int iEY = (int)Math.round(extentY); int iW = (int)Math.round(width); int iH = (int)Math.round(height); BoundedRangeModel horizModel = horizontalBar.getModel(); BoundedRangeModel vertModel = verticalBar.getModel(); if(iEX+iX > iW) horizontalBar.setEnabled(false); else { horizontalBar.setEnabled(true); if(iW != horizModel.getMaximum() || iEX != horizModel.getExtent()) { BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); } else { horizModel.setValue(iX); } } if(iEY+iY > iH) verticalBar.setEnabled(false); else { verticalBar.setEnabled(true); if(iH != vertModel.getMaximum() || iEY != vertModel.getExtent()) { BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); } else { vertModel.setValue(iY); } } } }); horizontalBar.setEnabled(false); horizontalBar.setModel(new DefaultBoundedRangeModel(0,0,0,0)); horizontalBar.addAdjustmentListener(new AdjustmentListener() { public void adjustmentValueChanged(AdjustmentEvent e) { int value = e.getValue(); embeddedView.getViewCamera().setX(value); } }); verticalBar.setEnabled(false); verticalBar.setModel(new DefaultBoundedRangeModel(0,0,0,0)); verticalBar.addAdjustmentListener(new AdjustmentListener() { public void adjustmentValueChanged(AdjustmentEvent e) { int value = e.getValue(); embeddedView.getViewCamera().setY(value); } }); JPanel fakeScrollPane = new JPanel(); JPanel verticalPanel = new JPanel(); verticalPanel.setLayout(new BorderLayout()); verticalPanel.add(embeddedView,BorderLayout.CENTER); verticalPanel.add(verticalBar,BorderLayout.EAST); JPanel horizontalPanel = new JPanel(); horizontalPanel.setLayout(new BorderLayout()); horizontalPanel.add(horizontalBar,BorderLayout.CENTER); horizontalPanel.add(Box.createHorizontalStrut(verticalBar.getPreferredSize().width), BorderLayout.EAST); verticalPanel.add(horizontalPanel,BorderLayout.SOUTH); fakeScrollPane.setLayout(new BorderLayout()); fakeScrollPane.add(verticalPanel,BorderLayout.CENTER); container.add(fakeScrollPane,BorderLayout.CENTER); container.add(toolbarPanel,BorderLayout.NORTH); if(controller.getStatusView() != null) { container.add(controller.getStatusView(),BorderLayout.SOUTH); } this.addFocusListener(new CommonFocusAdapter(this)); final UIWrapper refCopy = this; this.addInternalFrameListener(new InternalFrameAdapter() { /* (non-Javadoc) * @see javax.swing.event.InternalFrameAdapter#internalFrameClosing(javax.swing.event.InternalFrameEvent) */ public void internalFrameClosing(InternalFrameEvent arg0) { env.getBrowserManager().removeBrowser(refCopy); } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/BrowserInternalFrame.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserInternalFrame.java |
BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); | try { BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); } catch(IllegalArgumentException iae) { System.err.println("illegal width:["+iX+","+iEX+",0," +iW+"]"); iae.printStackTrace(); } | public void cameraBoundsChanged(double valueX, double valueY, double extentX, double extentY, double width, double height) { int iX = (int)Math.round(valueX); int iY = (int)Math.round(valueY); int iEX = (int)Math.round(extentX); int iEY = (int)Math.round(extentY); int iW = (int)Math.round(width); int iH = (int)Math.round(height); BoundedRangeModel horizModel = horizontalBar.getModel(); BoundedRangeModel vertModel = verticalBar.getModel(); if(iEX+iX > iW) horizontalBar.setEnabled(false); else { horizontalBar.setEnabled(true); if(iW != horizModel.getMaximum() || iEX != horizModel.getExtent()) { BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); } else { horizModel.setValue(iX); } } if(iEY+iY > iH) verticalBar.setEnabled(false); else { verticalBar.setEnabled(true); if(iH != vertModel.getMaximum() || iEY != vertModel.getExtent()) { BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); } else { vertModel.setValue(iY); } } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/BrowserInternalFrame.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserInternalFrame.java |
BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); | try { BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); } catch(IllegalArgumentException iae) { System.err.println("illegal height:["+iY+","+iEY+",0," +iH+"]"); iae.printStackTrace(); } | public void cameraBoundsChanged(double valueX, double valueY, double extentX, double extentY, double width, double height) { int iX = (int)Math.round(valueX); int iY = (int)Math.round(valueY); int iEX = (int)Math.round(extentX); int iEY = (int)Math.round(extentY); int iW = (int)Math.round(width); int iH = (int)Math.round(height); BoundedRangeModel horizModel = horizontalBar.getModel(); BoundedRangeModel vertModel = verticalBar.getModel(); if(iEX+iX > iW) horizontalBar.setEnabled(false); else { horizontalBar.setEnabled(true); if(iW != horizModel.getMaximum() || iEX != horizModel.getExtent()) { BoundedRangeModel hModel = new DefaultBoundedRangeModel(iX,iEX,0,iW); horizontalBar.setModel(hModel); } else { horizModel.setValue(iX); } } if(iEY+iY > iH) verticalBar.setEnabled(false); else { verticalBar.setEnabled(true); if(iH != vertModel.getMaximum() || iEY != vertModel.getExtent()) { BoundedRangeModel vModel = new DefaultBoundedRangeModel(iY,iEY,0,iH); verticalBar.setModel(vModel); } else { vertModel.setValue(iY); } } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/BrowserInternalFrame.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserInternalFrame.java |
add(createLayoutMenu()); target.addModelListener(new BrowserModelAdapter() { public void modelUpdated() { JMenu menu = (JMenu)menuMap.get(new Integer(LAYOUT_MENU)); JMenuItem menuItem = (JMenuItem)menuItemMap.get(new Integer(LAYOUT_CATEGORY_ITEM)); menu.remove(menuItem); menu.add(createCategoryLayoutMenu()); } }); | public BrowserMenuBar(BrowserModel target) { menuMap = new HashMap(); menuItemMap = new HashMap(); this.actionTarget = target; add(createViewMenu()); add(createAnalyzeMenu()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f82d914fe97ef0c74bef944bf12ae4961776c814/BrowserMenuBar.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserMenuBar.java |
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public void mouseClicked(MouseEvent me) { if(zoomLevel + 0.04 < maxZoomLevel) { zoomLevel += 0.04; view.setZoomLevel(zoomLevel); } else { zoomLevel = maxZoomLevel; view.setZoomLevel(zoomLevel); } } | public ZoomButtonPanel(BrowserView embeddedView) { currentTimer = new Timer(); BrowserEnvironment env = BrowserEnvironment.getInstance(); manager = env.getIconManager(); JButton zoomOutButton = new JButton(manager.getSmallIcon(IconManager.ZOOM_OUT)); // adjust percent format to not display fractional zoom percentFormat.setMaximumFractionDigits(0); this.view = embeddedView; zoomOutButton.addMouseListener(new MouseAdapter() { public void mousePressed(MouseEvent me) { running = true; view.setZoomToScale(false); currentTimerTask = new TimerTask() { public void run() { if(!running) running = true; if(zoomLevel == minZoomLevel) { running = false; cancel(); } else if(zoomLevel - 0.04 > minZoomLevel) { zoomLevel -= 0.04; view.setZoomLevel(zoomLevel); } else { running = false; zoomLevel = minZoomLevel; view.setZoomLevel(zoomLevel); cancel(); } } }; currentTimer.schedule(currentTimerTask,200,50); } public void mouseReleased(MouseEvent me) { if(running) { currentTimerTask.cancel(); running = false; } } }); zoomTextField = new JTextField(5); zoomTextField.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent ae) { getZoomFromText(); } }); zoomTextField.addFocusListener(new FocusAdapter() { public void focusLost(FocusEvent fe) { getZoomFromText(); } }); JButton zoomInButton = new JButton(manager.getSmallIcon(IconManager.ZOOM_IN)); zoomInButton.addMouseListener(new MouseAdapter() { public void mousePressed(MouseEvent me) { running = true; view.setZoomToScale(false); currentTimerTask = new TimerTask() { public void run() { if(!running) running = true; if(zoomLevel == maxZoomLevel) { running = false; cancel(); } else if(zoomLevel + 0.04 < maxZoomLevel) { zoomLevel += 0.04; view.setZoomLevel(zoomLevel); view.repaint(); } else { running = false; zoomLevel = maxZoomLevel; view.setZoomLevel(zoomLevel); view.repaint(); cancel(); } } }; currentTimer.schedule(currentTimerTask,200,50); } public void mouseReleased(MouseEvent me) { if(running) { running = false; currentTimerTask.cancel(); } } }); JButton zoomFitButton = new JButton(manager.getSmallIcon(IconManager.ZOOM_FIT)); zoomFitButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent ae) { view.setZoomToScale(true); } }); view.addZoomParamListener(new ZoomParamListener() { public void minZoomLevelChanged(double level) { minZoomLevel = level; } public void maxZoomLevelChanged(double level) { maxZoomLevel = level; } public void zoomLevelChanged(double level) { if(!running) { zoomLevel = level; } zoomTextField.setText(percentFormat.format(level)); } }); setLayout(new FlowLayout()); add(zoomOutButton); add(zoomTextField); add(zoomInButton); add(zoomFitButton); zoomOutButton.setToolTipText("Zoom Out"); zoomInButton.setToolTipText("Zoom In"); zoomFitButton.setToolTipText("Zoom to Fit"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/07357b3d8cbf047af1ecb7b0a4514d2c06b4b04f/ZoomButtonPanel.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/ZoomButtonPanel.java |
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camera.repaint(); | public void setX(double value) { System.err.println("setX: "+value); camera.translateView(getX()-value,0); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/09a5200ef146cc2a7e958d63e16c892b5b05f499/BrowserCamera.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserCamera.java |
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camera.repaint(); | public void setY(double value) { System.err.println("setY: "+value); camera.translateView(0,getY()-value); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/09a5200ef146cc2a7e958d63e16c892b5b05f499/BrowserCamera.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/BrowserCamera.java |
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public void removeBrowser(BrowserController browser) | public void removeBrowser(UIWrapper browser) | public void removeBrowser(BrowserController browser) { if (browser != null && browserList.contains(browser)) { browserList.remove(browser); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserManager.java |
.addClass( Project.class ); | .addClass( Project.class ) .addLong( "id", getNewProjects(1,TICKET_83).iterator().next()); | public void test_IObjectClassQuery_unique() throws Exception { p = new Parameters() .addClass( Project.class ); p.getFilter().unique(); Query q = new IObjectClassQuery(p); iQuery.execute( q ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0039ef3c66932163f0ec9bfa2b7f37eaa70abe47/UniqueResultTest.java/buggy/components/server/test/ome/server/itests/query/UniqueResultTest.java |
super( parameters); | super( defs, parameters ); | public PojosLoadHierarchyQueryDefinition(Parameters parameters) { super( parameters); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0039ef3c66932163f0ec9bfa2b7f37eaa70abe47/PojosLoadHierarchyQueryDefinition.java/buggy/components/server/src/ome/services/query/PojosLoadHierarchyQueryDefinition.java |
super(parameters); | super( defs, parameters ); | public StringQuery(QueryParameter...parameters ){ super(parameters); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f990a7d35ce265e182121d562725175896db41f4/StringQuerySource.java/buggy/components/server/src/ome/services/query/StringQuerySource.java |
if (map == null) throw new IllegalArgumentException("No annotations."); model.setAnnotations(map); view.showAnnotations(); if (model.hasThumbnail()) firePropertyChange(TreeViewer.THUMBNAIL_LOADING_PROPERTY, null, model.getHierarchyObject()); | if (map != null) { model.setAnnotations(map); view.showAnnotations(); if (model.hasThumbnail()) firePropertyChange(TreeViewer.THUMBNAIL_LOADING_PROPERTY, null, model.getHierarchyObject()); } | public void setAnnotations(Map map) { if (model.getState() == LOADING_ANNOTATION) { if (map == null) throw new IllegalArgumentException("No annotations."); model.setAnnotations(map); view.showAnnotations(); if (model.hasThumbnail()) firePropertyChange(TreeViewer.THUMBNAIL_LOADING_PROPERTY, null, model.getHierarchyObject()); model.setState(READY); fireStateChange(); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9737266ee96b9f45b2cbba505426251cbb52e6e2/EditorComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/editors/EditorComponent.java |
if (tail == null || head == null) { | if (tail == null) { return head; } else if (head == null) { | public Node block_append(Node head, Node tail) { if (tail == null || head == null) { return tail; } Node end; if (head instanceof BlockNode) { end = ((BlockNode)head).getEndNode(); } else { end = nf.newBlock(head); end.setEndNode(end); fixpos(end, head); head = end; } if (ruby.isVerbose()) { Node nd = end.getHeadNode(); while (true) { switch (nd.getType()) { case Constants.NODE_RETURN: case Constants.NODE_BREAK: case Constants.NODE_NEXT: case Constants.NODE_REDO: case Constants.NODE_RETRY: rb_warning("statement not reached"); break; case Constants.NODE_NEWLINE: nd = nd.getNextNode(); continue; default: break; } break; } } if (!(tail instanceof BlockNode)) { tail = nf.newBlock(tail); tail.setEndNode(tail); } end.setNextNode(tail); head.setEndNode(tail.getEndNode()); return head; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/59743974f1f8d5a50153b05647dac2d75d510976/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
return new ThreadContext(Ruby.this); | return mainContext; | protected Object initialValue() { return new ThreadContext(Ruby.this); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1ceedf02ac15d7325cfcf505ca74f35c5bc4a258/Ruby.java/buggy/org/jruby/Ruby.java |
this.ruby = ruby; internalParser.setErrorHandler(ruby.getErrorHandler()); | this.runtime = ruby; | public Parser(Ruby ruby) { this.ruby = ruby; internalParser.setErrorHandler(ruby.getErrorHandler()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1d78ab5252d2279eb5749dfcabc977e8def15496/Parser.java/buggy/org/jruby/parser/Parser.java |
public static ILoadService createLoadService() { return new LoadService(); | public static ILoadService createLoadService(Ruby runtime) { return new LoadService(runtime); | public static ILoadService createLoadService() { return new LoadService(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5d81c9b241cfde36fd62602eb41786ab5a0cd134/LoadServiceFactory.java/buggy/org/jruby/runtime/load/LoadServiceFactory.java |
Asserts.assertExpression(name.startsWith("$")); | public GlobalVariable(Ruby ruby, String name, IRubyObject value) { this.ruby = ruby; this.name = name; this.value = value; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/9028c57cb1199775e0b355581f41e146adcb60c1/GlobalVariable.java/buggy/org/jruby/runtime/GlobalVariable.java |
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public void push() { this.push(new Scope(ruby)); | public void push(List localNames) { push(); resetLocalVariables(localNames); | public void push() { this.push(new Scope(ruby)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/6e143e1ded2275ed4da3449d4a13446b099f800d/ScopeStack.java/buggy/src/org/jruby/runtime/ScopeStack.java |
initCoreClasses(); | public RubyClasses(Ruby ruby) { this.ruby = ruby; classMap = new RubyHashMap(); initCoreClasses(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/03950522a75c28f406bd4cb011cb1916a662366d/RubyClasses.java/buggy/org/jruby/RubyClasses.java |
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private void initCoreClasses() { | public void initCoreClasses() { | private void initCoreClasses() { RubyClass metaClass; objectClass = defineBootClass("Object", null); moduleClass = defineBootClass("Module", objectClass); classClass = defineBootClass("Class", moduleClass); metaClass = classClass.newSingletonClass(); objectClass.setRubyClass(metaClass); metaClass.attachSingletonClass(objectClass); metaClass = metaClass.newSingletonClass(); moduleClass.setRubyClass(metaClass); metaClass.attachSingletonClass(moduleClass); metaClass = metaClass.newSingletonClass(); classClass.setRubyClass(metaClass); metaClass.attachSingletonClass(classClass); kernelModule = RBKernel.createKernelModule(ruby); objectClass.includeModule(kernelModule); objectClass.definePrivateMethod("initialize", DefaultCallbackMethods.getMethodNil()); classClass.definePrivateMethod("inherited", DefaultCallbackMethods.getMethodNil()); /* * * Ruby's Class Hierarchy Chart * * +------------------+ * | | * Object---->(Object) | * ^ ^ ^ ^ | * | | | | | * | | +-----+ +---------+ | * | | | | | * | +-----------+ | | * | | | | | * +------+ | Module--->(Module) | * | | ^ ^ | * OtherClass-->(OtherClass) | | | * | | | * Class---->(Class) | * ^ | * | | * +----------------+ * * + All metaclasses are instances of the class `Class'. */ RbObject.initObjectClass(objectClass); RbClass.initClassClass(classClass); RbModule.initModuleClass(moduleClass); /*rubyTopSelf = objectClass.m_new((RubyObject[])null); rubyTopSelf.defineSingletonMethod("to_s", new RubyCallbackMethod() { public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { return RubyString.m_newString(ruby, "main"); } });*/ symbolClass = RbSymbol.createSymbolClass(ruby); nilClass = RbNilClass.createNilClass(ruby); falseClass = RbFalseClass.createFalseClass(ruby); trueClass = RbTrueClass.createTrueClass(ruby); comparableModule = RbComparable.createComparable(ruby); enumerableModule = RbEnumerable.createEnumerableModule(ruby); numericClass = RbNumeric.createNumericClass(ruby); integerClass = RbInteger.createIntegerClass(ruby); fixnumClass = RbFixnum.createFixnum(ruby); floatClass = RbFloat.createFloat(ruby); stringClass = RbString.createStringClass(ruby); arrayClass = RbArray.createArrayClass(ruby); rangeClass = RbRange.createRangeClass(ruby); javaObjectClass = RbJavaObject.createJavaObjectClass(ruby); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/03950522a75c28f406bd4cb011cb1916a662366d/RubyClasses.java/buggy/org/jruby/RubyClasses.java |
/* * * Ruby's Class Hierarchy Chart * * +------------------+ * | | * Object---->(Object) | * ^ ^ ^ ^ | * | | | | | * | | +-----+ +---------+ | * | | | | | * | +-----------+ | | * | | | | | * +------+ | Module--->(Module) | * | | ^ ^ | * OtherClass-->(OtherClass) | | | * | | | * Class---->(Class) | * ^ | * | | * +----------------+ * * + All metaclasses are instances of the class `Class'. */ | private void initCoreClasses() { RubyClass metaClass; objectClass = defineBootClass("Object", null); moduleClass = defineBootClass("Module", objectClass); classClass = defineBootClass("Class", moduleClass); metaClass = classClass.newSingletonClass(); objectClass.setRubyClass(metaClass); metaClass.attachSingletonClass(objectClass); metaClass = metaClass.newSingletonClass(); moduleClass.setRubyClass(metaClass); metaClass.attachSingletonClass(moduleClass); metaClass = metaClass.newSingletonClass(); classClass.setRubyClass(metaClass); metaClass.attachSingletonClass(classClass); kernelModule = RBKernel.createKernelModule(ruby); objectClass.includeModule(kernelModule); objectClass.definePrivateMethod("initialize", DefaultCallbackMethods.getMethodNil()); classClass.definePrivateMethod("inherited", DefaultCallbackMethods.getMethodNil()); /* * * Ruby's Class Hierarchy Chart * * +------------------+ * | | * Object---->(Object) | * ^ ^ ^ ^ | * | | | | | * | | +-----+ +---------+ | * | | | | | * | +-----------+ | | * | | | | | * +------+ | Module--->(Module) | * | | ^ ^ | * OtherClass-->(OtherClass) | | | * | | | * Class---->(Class) | * ^ | * | | * +----------------+ * * + All metaclasses are instances of the class `Class'. */ RbObject.initObjectClass(objectClass); RbClass.initClassClass(classClass); RbModule.initModuleClass(moduleClass); /*rubyTopSelf = objectClass.m_new((RubyObject[])null); rubyTopSelf.defineSingletonMethod("to_s", new RubyCallbackMethod() { public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { return RubyString.m_newString(ruby, "main"); } });*/ symbolClass = RbSymbol.createSymbolClass(ruby); nilClass = RbNilClass.createNilClass(ruby); falseClass = RbFalseClass.createFalseClass(ruby); trueClass = RbTrueClass.createTrueClass(ruby); comparableModule = RbComparable.createComparable(ruby); enumerableModule = RbEnumerable.createEnumerableModule(ruby); numericClass = RbNumeric.createNumericClass(ruby); integerClass = RbInteger.createIntegerClass(ruby); fixnumClass = RbFixnum.createFixnum(ruby); floatClass = RbFloat.createFloat(ruby); stringClass = RbString.createStringClass(ruby); arrayClass = RbArray.createArrayClass(ruby); rangeClass = RbRange.createRangeClass(ruby); javaObjectClass = RbJavaObject.createJavaObjectClass(ruby); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/03950522a75c28f406bd4cb011cb1916a662366d/RubyClasses.java/buggy/org/jruby/RubyClasses.java |
|
this.ruby = ruby; } | this.ruby = ruby; } | public RubyExceptions(Ruby ruby) { this.ruby = ruby; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyExceptions.java/buggy/org/jruby/runtime/RubyExceptions.java |
RubyClass exceptionClass = ruby.getClasses().getExceptionClass(); systemExit = ruby.defineClass("SystemExit", exceptionClass); fatal = ruby.defineClass("Fatal", exceptionClass); interrupt = ruby.defineClass("Interrupt", exceptionClass); signalException = ruby.defineClass("SignalException", exceptionClass); standardError = ruby.defineClass("StandardError", exceptionClass); typeError = ruby.defineClass("TypeError", standardError); argumentError = ruby.defineClass("ArgumentError", standardError); indexError = ruby.defineClass("IndexError", standardError); rangeError = ruby.defineClass("RangeError", standardError); scriptError = ruby.defineClass("ScriptError", exceptionClass); syntaxError = ruby.defineClass("SyntaxError", scriptError); nameError = ruby.defineClass("NameError", scriptError); loadError = ruby.defineClass("LoadError", scriptError); notImplementedError = ruby.defineClass("NotImplementedError", scriptError); runtimeError = ruby.defineClass("RuntimeError", standardError); securityError = ruby.defineClass("SecurityError", standardError); noMemError = ruby.defineClass("NoMemError", exceptionClass); regexpError = ruby.defineClass("RegexpError", standardError); } | RubyClass exceptionClass = ruby.getClasses().getExceptionClass(); systemExit = ruby.defineClass("SystemExit", exceptionClass); fatal = ruby.defineClass("Fatal", exceptionClass); interrupt = ruby.defineClass("Interrupt", exceptionClass); signalException = ruby.defineClass("SignalException", exceptionClass); standardError = ruby.defineClass("StandardError", exceptionClass); typeError = ruby.defineClass("TypeError", standardError); argumentError = ruby.defineClass("ArgumentError", standardError); indexError = ruby.defineClass("IndexError", standardError); rangeError = ruby.defineClass("RangeError", standardError); scriptError = ruby.defineClass("ScriptError", exceptionClass); syntaxError = ruby.defineClass("SyntaxError", scriptError); nameError = ruby.defineClass("NameError", scriptError); loadError = ruby.defineClass("LoadError", scriptError); notImplementedError = ruby.defineClass("NotImplementedError", scriptError); runtimeError = ruby.defineClass("RuntimeError", standardError); securityError = ruby.defineClass("SecurityError", standardError); noMemError = ruby.defineClass("NoMemError", exceptionClass); regexpError = ruby.defineClass("RegexpError", standardError); } | public void initDefaultExceptionClasses() { RubyClass exceptionClass = ruby.getClasses().getExceptionClass(); systemExit = ruby.defineClass("SystemExit", exceptionClass); fatal = ruby.defineClass("Fatal", exceptionClass); interrupt = ruby.defineClass("Interrupt", exceptionClass); signalException = ruby.defineClass("SignalException", exceptionClass); standardError = ruby.defineClass("StandardError", exceptionClass); typeError = ruby.defineClass("TypeError", standardError); argumentError = ruby.defineClass("ArgumentError", standardError); indexError = ruby.defineClass("IndexError", standardError); rangeError = ruby.defineClass("RangeError", standardError); scriptError = ruby.defineClass("ScriptError", exceptionClass); syntaxError = ruby.defineClass("SyntaxError", scriptError); nameError = ruby.defineClass("NameError", scriptError); loadError = ruby.defineClass("LoadError", scriptError); notImplementedError = ruby.defineClass("NotImplementedError", scriptError); runtimeError = ruby.defineClass("RuntimeError", standardError); securityError = ruby.defineClass("SecurityError", standardError); noMemError = ruby.defineClass("NoMemError", exceptionClass); regexpError = ruby.defineClass("RegexpError", standardError); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyExceptions.java/buggy/org/jruby/runtime/RubyExceptions.java |
return 0; | return -1; | public static IRubyObject createTopSelf(final Ruby runtime) { IRubyObject topSelf = runtime.getFactory().newObject(runtime.getClasses().getObjectClass()); topSelf.defineSingletonMethod("to_s", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return RubyString.newString(runtime, "main"); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("include", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { runtime.secure(4); return runtime.getClasses().getObjectClass().include(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("public", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return runtime.getClasses().getObjectClass().rbPublic(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("private", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return runtime.getClasses().getObjectClass().rbPrivate(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); return topSelf; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7b4144d109e833088b99fef35098efa1ab482436/TopSelfFactory.java/buggy/org/jruby/TopSelfFactory.java |
return 0; | return -1; | public static IRubyObject createTopSelf(final Ruby runtime) { IRubyObject topSelf = runtime.getFactory().newObject(runtime.getClasses().getObjectClass()); topSelf.defineSingletonMethod("to_s", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return RubyString.newString(runtime, "main"); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("include", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { runtime.secure(4); return runtime.getClasses().getObjectClass().include(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("public", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return runtime.getClasses().getObjectClass().rbPublic(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("private", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return runtime.getClasses().getObjectClass().rbPrivate(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); return topSelf; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7b4144d109e833088b99fef35098efa1ab482436/TopSelfFactory.java/buggy/org/jruby/TopSelfFactory.java |
return 0; | return -1; | public static IRubyObject createTopSelf(final Ruby runtime) { IRubyObject topSelf = runtime.getFactory().newObject(runtime.getClasses().getObjectClass()); topSelf.defineSingletonMethod("to_s", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return RubyString.newString(runtime, "main"); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("include", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { runtime.secure(4); return runtime.getClasses().getObjectClass().include(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("public", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return runtime.getClasses().getObjectClass().rbPublic(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); topSelf.defineSingletonMethod("private", new Callback() { /** * @see org.jruby.runtime.Callback#execute(IRubyObject, IRubyObject[]) */ public IRubyObject execute(IRubyObject recv, IRubyObject[] args) { return runtime.getClasses().getObjectClass().rbPrivate(args); } /** * @see org.jruby.runtime.Callback#getArity() */ public int getArity() { return 0; } }); return topSelf; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7b4144d109e833088b99fef35098efa1ab482436/TopSelfFactory.java/buggy/org/jruby/TopSelfFactory.java |
public INode parse(String file, Reader content) { return parse(file, content, new RubyParserConfiguration()); | public INode parse(String file, String content) { return parse(file, new StringReader(content)); | public INode parse(String file, Reader content) { return parse(file, content, new RubyParserConfiguration()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1d78ab5252d2279eb5749dfcabc977e8def15496/Parser.java/buggy/org/jruby/parser/Parser.java |
public Set<Token> allTokens() { if ( tokens.get() == null) return Collections.emptySet(); | public Set<Token> allTokens() { if (tokens.get() == null) return Collections.emptySet(); | public Set<Token> allTokens() { if ( tokens.get() == null) return Collections.emptySet(); return tokens.get().keySet(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9c53370b3f7a88f29e38673527398c205d19f7d6/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
public Token find(GraphHolder gh) { if ( tokens.get() == null ) return null; | public Token find(GraphHolder gh) { if (tokens.get() == null) return null; | public Token find(GraphHolder gh) { if ( tokens.get() == null ) return null; for (Token t : allTokens()) { if (gh.tokenMatches(t)) { return t; } } return null; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9c53370b3f7a88f29e38673527398c205d19f7d6/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
if (gh.tokenMatches(t)) { return t; | if (gh.tokenMatches(t)) { return t; | public Token find(GraphHolder gh) { if ( tokens.get() == null ) return null; for (Token t : allTokens()) { if (gh.tokenMatches(t)) { return t; } } return null; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/9c53370b3f7a88f29e38673527398c205d19f7d6/BasicSecuritySystem.java/buggy/components/server/src/ome/security/BasicSecuritySystem.java |
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