h4iku/coconut_java2006 · Datasets at Hugging Face

if(component.getId()==null){

IWMainApplication iwma = IWMainApplication.getIWMainApplication(context); String prop = iwma.getSettings().getProperty("article.cache.enabled"); boolean defaultEnabled = true; if(prop!=null){ defaultEnabled = Boolean.valueOf(prop).booleanValue(); } if(defaultEnabled){ if(component.getId()==null){ return false; } if(component instanceof ArticleItemViewer){ ArticleItemViewer viewer = (ArticleItemViewer)component; return viewer.isCacheEnabled(); } return true; } else{

public boolean isCacheEnbled(UIComponent component, FacesContext context) { if(component.getId()==null){ return false; } return true; }

57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticleCacher.java/clean/src/java/com/idega/block/article/ArticleCacher.java

return true;

public boolean isCacheEnbled(UIComponent component, FacesContext context) { if(component.getId()==null){ return false; } return true; }

57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/18f3f17c7d7e21ff910a232da3187e72e9de9847/ArticleCacher.java/clean/src/java/com/idega/block/article/ArticleCacher.java

if (!file.isAbsolute()) { file = new NormalizedFile(path.getRuntime().getCurrentDirectory(), path.getValue()); }

private static NormalizedFile newFile(RubyString path) { NormalizedFile file = new NormalizedFile(path.getValue()); try { file = (NormalizedFile)file.getCanonicalFile(); } catch (IOException e) { file = (NormalizedFile)file.getAbsoluteFile(); } return file; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/295cdd11472f7ae4b0426336dc7cdcabe946fdc1/RubyFileTest.java/buggy/src/org/jruby/RubyFileTest.java

displayed = true;

protected BrowserModel(int browserType, TreeViewer parent) { state = Browser.NEW; this.parent = parent; checkBrowserType(browserType); this.browserType = browserType; clickPoint = null; filterType = Browser.IN_DATASET_FILTER; foundNodeIndex = -1; selectedNodes = new HashSet(); mainTree = true; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/275dac348ef9abda7c33482582699efea0d0ed19/BrowserModel.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/BrowserModel.java

DatasetData d = (DatasetData) it.next(); p.linkDataset((Dataset) mapper.map(d));

DatasetData dd = (DatasetData) it.next(); Dataset d = (Dataset) mapper.map( dd ); if ( ! linked( d.findProjectDatasetLink( p ))) p.linkDataset( d );

public IObject fillIObject( IObject obj, ReverseModelMapper mapper) { if ( obj instanceof Project ) { Project p = (Project) obj; if (super.fill(p)) { p.setName(this.getName()); p.setDescription(this.getDescription()); // TODO / NOTE: could also take care of this in the getters and setters. // further we could just store the IObject and put all the logic in // the getters/setters! if (this.getDatasets() != null) { for (Iterator it = this.getDatasets().iterator(); it.hasNext();) { DatasetData d = (DatasetData) it.next(); p.linkDataset((Dataset) mapper.map(d)); } } } return p; } else { throw new IllegalArgumentException("ProjectData can only fill Project."); } }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b7d44d4a82558acd2336a661072dda1f38cfc0b3/ProjectData.java/clean/components/shoola-adapter/src/pojos/ProjectData.java

assertStringTemplateThrows ("$set $foo=$TestObject.throwException()",

assertStringTemplateThrows ("#set $foo=$TestObject.throwException()",

public void testEvalThrowsMethod() throws Exception { assertStringTemplateThrows ("$set $foo=$TestObject.throwException()", org.webmacro.PropertyException.class); }

52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c0a4783b7b1011468d906143e0417fffe173b39d/TestCrankyEEH.java/clean/webmacro/test/unit/org/webmacro/template/TestCrankyEEH.java

Iterator iter = ignoreRegexs.iterator(); while (iter.hasNext())

if (RegexUtil.matches(ignoreRegexs, owner))

public void visitMethodInsn(int opcode, String owner, String name, String desc) { super.visitMethodInsn(opcode, owner, name, desc); // If any of the ignore patterns match this line // then remove it from our data Iterator iter = ignoreRegexs.iterator(); while (iter.hasNext()) { Pattern ignoreRegex = (Pattern)iter.next(); if ((ignoreRegexs != null) && (pm.matches(owner, ignoreRegex))) { classData.removeLine(currentLine); return; } } }

50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/f21d7d6c791a9d50e30e19d77af0c8b3f2897c6c/MethodInstrumenter.java/clean/cobertura/src/net/sourceforge/cobertura/instrument/MethodInstrumenter.java

Pattern ignoreRegex = (Pattern)iter.next(); if ((ignoreRegexs != null) && (pm.matches(owner, ignoreRegex))) { classData.removeLine(currentLine); return; }

classData.removeLine(currentLine);

public void visitMethodInsn(int opcode, String owner, String name, String desc) { super.visitMethodInsn(opcode, owner, name, desc); // If any of the ignore patterns match this line // then remove it from our data Iterator iter = ignoreRegexs.iterator(); while (iter.hasNext()) { Pattern ignoreRegex = (Pattern)iter.next(); if ((ignoreRegexs != null) && (pm.matches(owner, ignoreRegex))) { classData.removeLine(currentLine); return; } } }

50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/f21d7d6c791a9d50e30e19d77af0c8b3f2897c6c/MethodInstrumenter.java/clean/cobertura/src/net/sourceforge/cobertura/instrument/MethodInstrumenter.java

List l = Arrays.asList( s.split(LookupNames.SERVER_NAME_SEPARATOR, 0)); if (l == null || l.size() == 0) {

String[] l = s.split(LookupNames.SERVER_NAME_SEPARATOR, 0); if (l == null || l.length == 0) {

private boolean attempt() { UserCredentials uc = config.getCredentials(); try { if (uc == null) throw new DSOutOfServiceException( "No user's credentials have been entered yet."); //NOTE: This will never happen if the Splash Screen always blocks //waiting for the user's credentials and the login dialog never //passes null credentials along. DataServicesFactory factory = DataServicesFactory.getInstance( container); if (factory.isConnected()) return true; factory.connect(uc); //Log success. LogMessage msg = new LogMessage(); msg.println("Logged onto OMERO at: "+uc.getHostName()); msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.info(this, msg); //Write property. Properties defaultProp = new Properties(); try { FileInputStream in = new FileInputStream( LookupNames.OMERO_PROPERTIES); defaultProp.load(in); in.close(); } catch (Exception e) { // TODO: handle exception } String s = defaultProp.getProperty(LookupNames.OMERO_SERVER); String listOfServers = null; if (s == null) { listOfServers = uc.getHostName(); } else { List l = Arrays.asList( s.split(LookupNames.SERVER_NAME_SEPARATOR, 0)); if (l == null || l.size() == 0) { listOfServers = uc.getHostName(); } else { Iterator i = l.iterator(); boolean b = false; int index = 0; int n = l.size()-1; String name = uc.getHostName(); String host; while (i.hasNext()) { host = ((String) i.next()).trim(); if (name.equals(host)) b = true; if (index == 0) listOfServers = host; else listOfServers += host; if (index != n) listOfServers += ","; index++; } if (!b) listOfServers += ","+uc.getHostName(); } } Properties prop = new Properties(); if (listOfServers != null) prop.setProperty(LookupNames.OMERO_SERVER, listOfServers); try { FileOutputStream out = new FileOutputStream( LookupNames.OMERO_PROPERTIES); prop.store(out, ""); out.close(); } catch (Exception e) { // TODO: handle exception } return true; } catch (DSOutOfServiceException dsose) { //Log failure. LogMessage msg = new LogMessage(); msg.println("Failed to log onto OMERO."); msg.println("Reason: "+dsose); msg.println("OMERO Address: "+uc.getHostName()); if (uc != null) msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.error(this, msg); } return false; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7bf166a5aea933565232544ef7535e345cd27f93/LoginServiceImpl.java/buggy/SRC/org/openmicroscopy/shoola/env/data/login/LoginServiceImpl.java

Iterator i = l.iterator();

private boolean attempt() { UserCredentials uc = config.getCredentials(); try { if (uc == null) throw new DSOutOfServiceException( "No user's credentials have been entered yet."); //NOTE: This will never happen if the Splash Screen always blocks //waiting for the user's credentials and the login dialog never //passes null credentials along. DataServicesFactory factory = DataServicesFactory.getInstance( container); if (factory.isConnected()) return true; factory.connect(uc); //Log success. LogMessage msg = new LogMessage(); msg.println("Logged onto OMERO at: "+uc.getHostName()); msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.info(this, msg); //Write property. Properties defaultProp = new Properties(); try { FileInputStream in = new FileInputStream( LookupNames.OMERO_PROPERTIES); defaultProp.load(in); in.close(); } catch (Exception e) { // TODO: handle exception } String s = defaultProp.getProperty(LookupNames.OMERO_SERVER); String listOfServers = null; if (s == null) { listOfServers = uc.getHostName(); } else { List l = Arrays.asList( s.split(LookupNames.SERVER_NAME_SEPARATOR, 0)); if (l == null || l.size() == 0) { listOfServers = uc.getHostName(); } else { Iterator i = l.iterator(); boolean b = false; int index = 0; int n = l.size()-1; String name = uc.getHostName(); String host; while (i.hasNext()) { host = ((String) i.next()).trim(); if (name.equals(host)) b = true; if (index == 0) listOfServers = host; else listOfServers += host; if (index != n) listOfServers += ","; index++; } if (!b) listOfServers += ","+uc.getHostName(); } } Properties prop = new Properties(); if (listOfServers != null) prop.setProperty(LookupNames.OMERO_SERVER, listOfServers); try { FileOutputStream out = new FileOutputStream( LookupNames.OMERO_PROPERTIES); prop.store(out, ""); out.close(); } catch (Exception e) { // TODO: handle exception } return true; } catch (DSOutOfServiceException dsose) { //Log failure. LogMessage msg = new LogMessage(); msg.println("Failed to log onto OMERO."); msg.println("Reason: "+dsose); msg.println("OMERO Address: "+uc.getHostName()); if (uc != null) msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.error(this, msg); } return false; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7bf166a5aea933565232544ef7535e345cd27f93/LoginServiceImpl.java/buggy/SRC/org/openmicroscopy/shoola/env/data/login/LoginServiceImpl.java

int index = 0; int n = l.size()-1;

int n = l.length-1;

private boolean attempt() { UserCredentials uc = config.getCredentials(); try { if (uc == null) throw new DSOutOfServiceException( "No user's credentials have been entered yet."); //NOTE: This will never happen if the Splash Screen always blocks //waiting for the user's credentials and the login dialog never //passes null credentials along. DataServicesFactory factory = DataServicesFactory.getInstance( container); if (factory.isConnected()) return true; factory.connect(uc); //Log success. LogMessage msg = new LogMessage(); msg.println("Logged onto OMERO at: "+uc.getHostName()); msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.info(this, msg); //Write property. Properties defaultProp = new Properties(); try { FileInputStream in = new FileInputStream( LookupNames.OMERO_PROPERTIES); defaultProp.load(in); in.close(); } catch (Exception e) { // TODO: handle exception } String s = defaultProp.getProperty(LookupNames.OMERO_SERVER); String listOfServers = null; if (s == null) { listOfServers = uc.getHostName(); } else { List l = Arrays.asList( s.split(LookupNames.SERVER_NAME_SEPARATOR, 0)); if (l == null || l.size() == 0) { listOfServers = uc.getHostName(); } else { Iterator i = l.iterator(); boolean b = false; int index = 0; int n = l.size()-1; String name = uc.getHostName(); String host; while (i.hasNext()) { host = ((String) i.next()).trim(); if (name.equals(host)) b = true; if (index == 0) listOfServers = host; else listOfServers += host; if (index != n) listOfServers += ","; index++; } if (!b) listOfServers += ","+uc.getHostName(); } } Properties prop = new Properties(); if (listOfServers != null) prop.setProperty(LookupNames.OMERO_SERVER, listOfServers); try { FileOutputStream out = new FileOutputStream( LookupNames.OMERO_PROPERTIES); prop.store(out, ""); out.close(); } catch (Exception e) { // TODO: handle exception } return true; } catch (DSOutOfServiceException dsose) { //Log failure. LogMessage msg = new LogMessage(); msg.println("Failed to log onto OMERO."); msg.println("Reason: "+dsose); msg.println("OMERO Address: "+uc.getHostName()); if (uc != null) msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.error(this, msg); } return false; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7bf166a5aea933565232544ef7535e345cd27f93/LoginServiceImpl.java/buggy/SRC/org/openmicroscopy/shoola/env/data/login/LoginServiceImpl.java

while (i.hasNext()) { host = ((String) i.next()).trim();

for (int index = 0; index < l.length; index++) { host = l[index].trim();

private boolean attempt() { UserCredentials uc = config.getCredentials(); try { if (uc == null) throw new DSOutOfServiceException( "No user's credentials have been entered yet."); //NOTE: This will never happen if the Splash Screen always blocks //waiting for the user's credentials and the login dialog never //passes null credentials along. DataServicesFactory factory = DataServicesFactory.getInstance( container); if (factory.isConnected()) return true; factory.connect(uc); //Log success. LogMessage msg = new LogMessage(); msg.println("Logged onto OMERO at: "+uc.getHostName()); msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.info(this, msg); //Write property. Properties defaultProp = new Properties(); try { FileInputStream in = new FileInputStream( LookupNames.OMERO_PROPERTIES); defaultProp.load(in); in.close(); } catch (Exception e) { // TODO: handle exception } String s = defaultProp.getProperty(LookupNames.OMERO_SERVER); String listOfServers = null; if (s == null) { listOfServers = uc.getHostName(); } else { List l = Arrays.asList( s.split(LookupNames.SERVER_NAME_SEPARATOR, 0)); if (l == null || l.size() == 0) { listOfServers = uc.getHostName(); } else { Iterator i = l.iterator(); boolean b = false; int index = 0; int n = l.size()-1; String name = uc.getHostName(); String host; while (i.hasNext()) { host = ((String) i.next()).trim(); if (name.equals(host)) b = true; if (index == 0) listOfServers = host; else listOfServers += host; if (index != n) listOfServers += ","; index++; } if (!b) listOfServers += ","+uc.getHostName(); } } Properties prop = new Properties(); if (listOfServers != null) prop.setProperty(LookupNames.OMERO_SERVER, listOfServers); try { FileOutputStream out = new FileOutputStream( LookupNames.OMERO_PROPERTIES); prop.store(out, ""); out.close(); } catch (Exception e) { // TODO: handle exception } return true; } catch (DSOutOfServiceException dsose) { //Log failure. LogMessage msg = new LogMessage(); msg.println("Failed to log onto OMERO."); msg.println("Reason: "+dsose); msg.println("OMERO Address: "+uc.getHostName()); if (uc != null) msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.error(this, msg); } return false; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7bf166a5aea933565232544ef7535e345cd27f93/LoginServiceImpl.java/buggy/SRC/org/openmicroscopy/shoola/env/data/login/LoginServiceImpl.java

index++;

private boolean attempt() { UserCredentials uc = config.getCredentials(); try { if (uc == null) throw new DSOutOfServiceException( "No user's credentials have been entered yet."); //NOTE: This will never happen if the Splash Screen always blocks //waiting for the user's credentials and the login dialog never //passes null credentials along. DataServicesFactory factory = DataServicesFactory.getInstance( container); if (factory.isConnected()) return true; factory.connect(uc); //Log success. LogMessage msg = new LogMessage(); msg.println("Logged onto OMERO at: "+uc.getHostName()); msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.info(this, msg); //Write property. Properties defaultProp = new Properties(); try { FileInputStream in = new FileInputStream( LookupNames.OMERO_PROPERTIES); defaultProp.load(in); in.close(); } catch (Exception e) { // TODO: handle exception } String s = defaultProp.getProperty(LookupNames.OMERO_SERVER); String listOfServers = null; if (s == null) { listOfServers = uc.getHostName(); } else { List l = Arrays.asList( s.split(LookupNames.SERVER_NAME_SEPARATOR, 0)); if (l == null || l.size() == 0) { listOfServers = uc.getHostName(); } else { Iterator i = l.iterator(); boolean b = false; int index = 0; int n = l.size()-1; String name = uc.getHostName(); String host; while (i.hasNext()) { host = ((String) i.next()).trim(); if (name.equals(host)) b = true; if (index == 0) listOfServers = host; else listOfServers += host; if (index != n) listOfServers += ","; index++; } if (!b) listOfServers += ","+uc.getHostName(); } } Properties prop = new Properties(); if (listOfServers != null) prop.setProperty(LookupNames.OMERO_SERVER, listOfServers); try { FileOutputStream out = new FileOutputStream( LookupNames.OMERO_PROPERTIES); prop.store(out, ""); out.close(); } catch (Exception e) { // TODO: handle exception } return true; } catch (DSOutOfServiceException dsose) { //Log failure. LogMessage msg = new LogMessage(); msg.println("Failed to log onto OMERO."); msg.println("Reason: "+dsose); msg.println("OMERO Address: "+uc.getHostName()); if (uc != null) msg.println(uc); Logger logger = container.getRegistry().getLogger(); logger.error(this, msg); } return false; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7bf166a5aea933565232544ef7535e345cd27f93/LoginServiceImpl.java/buggy/SRC/org/openmicroscopy/shoola/env/data/login/LoginServiceImpl.java

super(runtime); }

public ThreadDefinition(Ruby runtime) { super(runtime); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dc7ce748a0710f6824ce88e4621f4479beb195fc/ThreadDefinition.java/buggy/src/org/jruby/internal/runtime/builtin/definitions/ThreadDefinition.java

switch (index) { case ABORT_ON_EXCEPTION : return ThreadClass.abort_on_exception(receiver); case ABORT_ON_EXCEPTION_SET : return ThreadClass.abort_on_exception_set(receiver, args[0]); case CURRENT : return ThreadClass.current(receiver); case S_EXIT : case LIST : return ThreadClass.list(receiver); case NEW : return ThreadClass.newInstance(receiver, args); case PASS : return ThreadClass.pass(receiver); case START : return ThreadClass.start(receiver, args); } Asserts.notReached(); return null; }

switch (index) { case CURRENT : return org.jruby.ThreadClass.current(receiver); case NEWINSTANCE : return org.jruby.ThreadClass.newInstance(receiver, args); case LIST : return org.jruby.ThreadClass.list(receiver); case PASS : return org.jruby.ThreadClass.pass(receiver); case START : return org.jruby.ThreadClass.start(receiver, args); default : Asserts.notReached(); return null; } }

public IRubyObject callIndexed(int index, IRubyObject receiver, IRubyObject[] args) { switch (index) { case ABORT_ON_EXCEPTION : return ThreadClass.abort_on_exception(receiver); case ABORT_ON_EXCEPTION_SET : return ThreadClass.abort_on_exception_set(receiver, args[0]); case CURRENT : return ThreadClass.current(receiver); case S_EXIT : //return RubyThread.exit(receiver); case LIST : return ThreadClass.list(receiver); case NEW : return ThreadClass.newInstance(receiver, args); case PASS : return ThreadClass.pass(receiver); case START : return ThreadClass.start(receiver, args); } Asserts.notReached(); return null; }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dc7ce748a0710f6824ce88e4621f4479beb195fc/ThreadDefinition.java/buggy/src/org/jruby/internal/runtime/builtin/definitions/ThreadDefinition.java

return runtime.defineClass("Thread", runtime.getClasses().getObjectClass()); }

RubyClass result = runtime.defineClass("Thread", (RubyClass) runtime.getClasses().getClass("Object")); return result; }

protected RubyClass createType(Ruby runtime) { return runtime.defineClass("Thread", runtime.getClasses().getObjectClass()); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dc7ce748a0710f6824ce88e4621f4479beb195fc/ThreadDefinition.java/buggy/src/org/jruby/internal/runtime/builtin/definitions/ThreadDefinition.java

context.create("[]", AREF, 1); context.create("[]=", ASET, 2); context.create("abort_on_exception", ABORT_ON_EXCEPTION, 0); context.create("abort_on_exception=", ABORT_ON_EXCEPTION_SET, 1); context.create("alive?", IS_ALIVE, 0); context.create("exit", EXIT, 0); context.create("join", JOIN, 0); context.create("key?", IS_KEY, 1); context.create("kill", EXIT, 0); context.create("priority", PRIORITY, 0); context.create("priority=", PRIORITY_SET, 1); context.createOptional("raise", RAISE, 1); context.create("run", RUN, 0); context.create("safe_level", SAFE_LEVEL, 0); context.create("status", STATUS, 0); context.create("stop?", IS_STOP, 0); context.create("value", VALUE, 0); context.create("wakeup", WAKEUP, 0); }

context.create("[]", AREF, 1); context.create("[]=", ASET, 2); context.create("abort_on_exception", ABORT_ON_EXCEPTION, 0); context.create("abort_on_exception=", ABORT_ON_EXCEPTION_SET, 1); context.create("alive?", IS_ALIVE, 0); context.create("exit", EXIT, 0); context.create("join", JOIN, 0); context.create("key?", IS_KEY, 1); context.create("priority", PRIORITY, 0); context.create("priority=", PRIORITY_SET, 1); context.createOptional("raise", RAISE, 1); context.create("status", STATUS, 0); }

protected void defineMethods(MethodContext context) { context.create("[]", AREF, 1); context.create("[]=", ASET, 2); context.create("abort_on_exception", ABORT_ON_EXCEPTION, 0); context.create("abort_on_exception=", ABORT_ON_EXCEPTION_SET, 1); context.create("alive?", IS_ALIVE, 0); context.create("exit", EXIT, 0); context.create("join", JOIN, 0); context.create("key?", IS_KEY, 1); context.create("kill", EXIT, 0); context.create("priority", PRIORITY, 0); context.create("priority=", PRIORITY_SET, 1); context.createOptional("raise", RAISE, 1); context.create("run", RUN, 0); context.create("safe_level", SAFE_LEVEL, 0); context.create("status", STATUS, 0); context.create("stop?", IS_STOP, 0); context.create("value", VALUE, 0); context.create("wakeup", WAKEUP, 0); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dc7ce748a0710f6824ce88e4621f4479beb195fc/ThreadDefinition.java/buggy/src/org/jruby/internal/runtime/builtin/definitions/ThreadDefinition.java

context.create("abort_on_exception", S_ABORT_ON_EXCEPTION, 0); context.create("abort_on_exception=", S_ABORT_ON_EXCEPTION_SET, 1); context.create("current", CURRENT, 0); context.create("exit", S_EXIT, 0); context.createOptional("fork", NEW); context.create("list", LIST, 0); context.createOptional("new", NEW); context.create("pass", PASS, 0); context.createOptional("start", START); }

context.create("current", CURRENT, 0); context.createOptional("fork", NEWINSTANCE, 0); context.create("list", LIST, 0); context.createOptional("new", NEWINSTANCE, 0); context.create("pass", PASS, 0); context.createOptional("start", START, 0); }

protected void defineSingletonMethods(SingletonMethodContext context) { context.create("abort_on_exception", S_ABORT_ON_EXCEPTION, 0); context.create("abort_on_exception=", S_ABORT_ON_EXCEPTION_SET, 1); context.create("current", CURRENT, 0); context.create("exit", S_EXIT, 0); context.createOptional("fork", NEW); context.create("list", LIST, 0); context.createOptional("new", NEW); context.create("pass", PASS, 0); context.createOptional("start", START); // context.create("main", MAIN, 0); // context.create("stop", STOP, 0); // context.create("critical", CRITICAL, 0); // context.create("critical=", CRITICAL_SET, 1); // context.create("kill", KILL, 1); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dc7ce748a0710f6824ce88e4621f4479beb195fc/ThreadDefinition.java/buggy/src/org/jruby/internal/runtime/builtin/definitions/ThreadDefinition.java

ArrayList list = new ArrayList(); Iterator iter = recv.getRuntime().objectSpace.iterator(recv.getRuntime().getClasses().getThreadClass());

Ruby ruby = recv.getRuntime(); List list = new ArrayList(); Iterator iter = ruby.objectSpace.iterator(recv.getRuntime().getClasses().getThreadClass());

public static RubyArray list(IRubyObject recv) { ArrayList list = new ArrayList(); Iterator iter = recv.getRuntime().objectSpace.iterator(recv.getRuntime().getClasses().getThreadClass()); while (iter.hasNext()) { list.add(iter.next()); } return RubyArray.newArray(recv.getRuntime(), list); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0dddc2281d031c27f48b5cb2519e375dfcf2196e/ThreadClass.java/buggy/src/org/jruby/ThreadClass.java

public static RubyArray list(IRubyObject recv) { ArrayList list = new ArrayList(); Iterator iter = recv.getRuntime().objectSpace.iterator(recv.getRuntime().getClasses().getThreadClass()); while (iter.hasNext()) { list.add(iter.next()); } return RubyArray.newArray(recv.getRuntime(), list); }

50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0dddc2281d031c27f48b5cb2519e375dfcf2196e/ThreadClass.java/buggy/src/org/jruby/ThreadClass.java

} else if (usrObject instanceof String) id = NO_ICON;

} else if (usrObject instanceof String) { text = (String) usrObject; id = NO_ICON; }

private int getIconID(Object value) { DefaultMutableTreeNode node = (DefaultMutableTreeNode) value; Object usrObject = node.getUserObject(); int id = ROOT_ICON; if (node.getLevel() != 0) { Set set; String text = null; if (usrObject instanceof ProjectData) { text = ((ProjectData) usrObject).getName(); id = PROJECT_ICON; } else if (usrObject instanceof DatasetData) { DatasetData dataset = (DatasetData) usrObject; text = dataset.getName(); set = dataset.getAnnotations(); if (set == null || set.size() == 0) id = DATASET_ICON; else id = ANNOTATED_DATASET_ICON; } else if (usrObject instanceof ImageData) { ImageData image = (ImageData) usrObject; text = image.getName(); set = image.getAnnotations(); if (set == null || set.size() == 0) id = IMAGE_ICON; else id = ANNOTATED_IMAGE_ICON; } else if (usrObject instanceof CategoryGroupData) { text = ((CategoryGroupData) usrObject).getName(); id = CATEGORY_GROUP_ICON; } else if (usrObject instanceof CategoryData) { text = ((CategoryData) usrObject).getName(); id = CATEGORY_ICON; } else if (usrObject instanceof String) id = NO_ICON; setText(text); } return id; }

54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5d253e1d8b8b563bd79074b962fe0a01fca0a091/DataTreeCellRenderer.java/buggy/SRC/org/openmicroscopy/shoola/agents/datamng/DataTreeCellRenderer.java

if (jj_scan_token(BEGIN)) return true;

if (jj_scan_token(WS)) return true;

final private boolean jj_3R_15() { if (jj_scan_token(BEGIN)) return true; if (jj_la == 0 && jj_scanpos == jj_lastpos) return false; return false; }