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{ | try { errorIfNullRenderingDef(); | public void saveCurrentSettings() { rwl.writeLock().lock(); { // TODO vararg save method. pixMetaSrv.saveRndSettings(rendDefObj); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void saveCurrentSettings() { rwl.writeLock().lock(); { // TODO vararg save method. pixMetaSrv.saveRndSettings(rendDefObj); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { rwl.writeLock().lock(); errorIfInvalidState(); | public void setActive(int w, boolean active) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); ChannelBinding[] cb = renderer.getChannelBindings(); cb[w].setActive(Boolean.valueOf(active)); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setActive(int w, boolean active) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); ChannelBinding[] cb = renderer.getChannelBindings(); cb[w].setActive(Boolean.valueOf(active)); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setChannelWindow(int w, double start, double end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setChannelWindow(w, start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setChannelWindow(int w, double start, double end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setChannelWindow(w, start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setCodomainInterval(int start, int end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setCodomainInterval(start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setCodomainInterval(int start, int end) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setCodomainInterval(start, end); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setDefaultT(int t) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultT(t); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setDefaultT(int t) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultT(t); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setDefaultZ(int z) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultZ(z); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setDefaultZ(int z) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setDefaultZ(z); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setModel(int model) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setModel(model); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setModel(int model) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setModel(model); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setQuantizationMap(w, family, coefficient, noiseReduction); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setQuantizationMap(w, family, coefficient, noiseReduction); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void setQuantizationMap(int w, int family, double coefficient, boolean noiseReduction) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setQuantizationMap(w, family, coefficient, noiseReduction); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void setRGBA(int w, int red, int green, int blue, int alpha) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setRGBA(w, red, green, blue, alpha); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
} finally { rwl.writeLock().unlock(); | public void setRGBA(int w, int red, int green, int blue, int alpha) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setRGBA(w, red, green, blue, alpha); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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rwl.writeLock().unlock(); | public void setRGBA(int w, int red, int green, int blue, int alpha) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.setRGBA(w, red, green, blue, alpha); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ if (renderer == null) throw new IllegalStateException(NULL_RENDERER); | try { errorIfInvalidState(); | public void updateCodomainMap(CodomainMapContext mapCtx) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.getCodomainChain().update(mapCtx.copy()); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | public void updateCodomainMap(CodomainMapContext mapCtx) { rwl.writeLock().lock(); { if (renderer == null) throw new IllegalStateException(NULL_RENDERER); renderer.getCodomainChain().update(mapCtx.copy()); } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
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{ | try { | public void usePixels(Pixels pixels) { rwl.writeLock().lock(); { this.pixelsObj = pixels; this.renderer = null; } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
rwl.writeLock().unlock(); | if (log.isDebugEnabled()) log.debug("Using pixels: "+this.pixelsObj); | public void usePixels(Pixels pixels) { rwl.writeLock().lock(); { this.pixelsObj = pixels; this.renderer = null; } rwl.writeLock().unlock(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1a80ae364d5a13aebca07b0ae7349d79247ded75/RenderingEngineImpl.java/buggy/components/rendering/src/omeis/providers/re/RenderingEngineImpl.java |
super(runtime, null, superClass, runtime.getObject(), "Class", RubyClass.class); | super(runtime, null, superClass, runtime.getObject().getCRef(), "Class", RubyClass.class); | public ClassMetaClass(IRuby runtime, RubyClass superClass) { super(runtime, null, superClass, runtime.getObject(), "Class", RubyClass.class); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/ClassMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/ClassMetaClass.java |
if (target == null) return; | void showMenu(int x, int y) { TreePopupMenu menu = view.getPopupMenu(); DataObject target = getDataObject(); String txt = TreePopupMenu.BROWSE; boolean b = false; if (target instanceof ImageSummary) { txt = TreePopupMenu.VIEW; b = true; } menu.setViewText(txt); menu.setClassifyEnabled(b); menu.show(this, x, y); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f8f7dcdd74bccad5e7a9d969c7ab47c1cfee6015/SearchResultsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/SearchResultsPane.java |
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throws IOException, QuantizationException | throws IOException, QuantizationException | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the rendering context for the current invocation. renderer = ctx; RenderingStats performanceStats = renderer.getStats(); //Initialize sizeX1 and sizeX2 according to the plane. initAxesSize(planeDef, renderer.getMetadata()); //Process each active wavelength. If their number N > 1, then //process N-1 async and one in the current thread. If N = 1, //just use the current thread. RenderHSBWaveTask[] tasks = makeRndTasks(planeDef); performanceStats.startRendering(); int n = tasks.length; Future[] rndTskFutures = new Future[n]; //[0] unused. //CmdProcessor processor = Env.getProcessor(); ExecutorService processor = Executors.newCachedThreadPool();//j.m while (0 < --n) rndTskFutures[n] = processor.submit(tasks[n]); //j.m exec(tasks[n]); RGBBuffer rndDataBuf = null; byte[] red = null, green = null, blue = null; if (n == 0) { rndDataBuf = (RGBBuffer) tasks[0].call(); red = rndDataBuf.getRedBand(); green = rndDataBuf.getGreenBand(); blue = rndDataBuf.getBlueBand(); } //Wait for all forked tasks (if any) to complete. //When a task completes, assemble its RGB buffer into rndDataBuf. RGBBuffer taskBuffer; int x1, x2, pix; byte[] r, g, b; for (n = 1; n < rndTskFutures.length; ++n) { try { taskBuffer = (RGBBuffer) rndTskFutures[n].get();//j.m getResult(); r = taskBuffer.getRedBand(); g = taskBuffer.getGreenBand(); b = taskBuffer.getBlueBand(); for (x2 = 0; x2 < sizeX2; ++x2) { for (x1 = 0; x1 < sizeX1; ++x1) { pix = sizeX1*x2+x1; red[pix] = (byte) (red[pix]+r[pix]); green[pix] = (byte) (green[pix]+g[pix]); blue[pix] = (byte) (blue[pix]+b[pix]); } } } catch (Exception e) { if (e instanceof QuantizationException) throw (QuantizationException) e; throw (RuntimeException) e; //B/c call() only throws QuantizationException, it must be RE. } } performanceStats.endRendering(); if (rndDataBuf == null) //No active channel, return a black image. return new RGBBuffer(sizeX1, sizeX2); //Done. return rndDataBuf; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/HSBStrategy.java/buggy/components/rendering/src/omeis/providers/re/HSBStrategy.java |
renderer = ctx; RenderingStats performanceStats = renderer.getStats(); | renderer = ctx; RenderingStats performanceStats = renderer.getStats(); Pixels metadata = renderer.getMetadata(); initAxesSize(planeDef, metadata); performanceStats.startMalloc(); RGBBuffer buf = new RGBBuffer(sizeX1, sizeX2); performanceStats.endMalloc(); | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the rendering context for the current invocation. renderer = ctx; RenderingStats performanceStats = renderer.getStats(); //Initialize sizeX1 and sizeX2 according to the plane. initAxesSize(planeDef, renderer.getMetadata()); //Process each active wavelength. If their number N > 1, then //process N-1 async and one in the current thread. If N = 1, //just use the current thread. RenderHSBWaveTask[] tasks = makeRndTasks(planeDef); performanceStats.startRendering(); int n = tasks.length; Future[] rndTskFutures = new Future[n]; //[0] unused. //CmdProcessor processor = Env.getProcessor(); ExecutorService processor = Executors.newCachedThreadPool();//j.m while (0 < --n) rndTskFutures[n] = processor.submit(tasks[n]); //j.m exec(tasks[n]); RGBBuffer rndDataBuf = null; byte[] red = null, green = null, blue = null; if (n == 0) { rndDataBuf = (RGBBuffer) tasks[0].call(); red = rndDataBuf.getRedBand(); green = rndDataBuf.getGreenBand(); blue = rndDataBuf.getBlueBand(); } //Wait for all forked tasks (if any) to complete. //When a task completes, assemble its RGB buffer into rndDataBuf. RGBBuffer taskBuffer; int x1, x2, pix; byte[] r, g, b; for (n = 1; n < rndTskFutures.length; ++n) { try { taskBuffer = (RGBBuffer) rndTskFutures[n].get();//j.m getResult(); r = taskBuffer.getRedBand(); g = taskBuffer.getGreenBand(); b = taskBuffer.getBlueBand(); for (x2 = 0; x2 < sizeX2; ++x2) { for (x1 = 0; x1 < sizeX1; ++x1) { pix = sizeX1*x2+x1; red[pix] = (byte) (red[pix]+r[pix]); green[pix] = (byte) (green[pix]+g[pix]); blue[pix] = (byte) (blue[pix]+b[pix]); } } } catch (Exception e) { if (e instanceof QuantizationException) throw (QuantizationException) e; throw (RuntimeException) e; //B/c call() only throws QuantizationException, it must be RE. } } performanceStats.endRendering(); if (rndDataBuf == null) //No active channel, return a black image. return new RGBBuffer(sizeX1, sizeX2); //Done. return rndDataBuf; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/HSBStrategy.java/buggy/components/rendering/src/omeis/providers/re/HSBStrategy.java |
initAxesSize(planeDef, renderer.getMetadata()); RenderHSBWaveTask[] tasks = makeRndTasks(planeDef); performanceStats.startRendering(); int n = tasks.length; Future[] rndTskFutures = new Future[n]; ExecutorService processor = Executors.newCachedThreadPool(); while (0 < --n) rndTskFutures[n] = processor.submit(tasks[n]); RGBBuffer rndDataBuf = null; byte[] red = null, green = null, blue = null; if (n == 0) { rndDataBuf = (RGBBuffer) tasks[0].call(); red = rndDataBuf.getRedBand(); green = rndDataBuf.getGreenBand(); blue = rndDataBuf.getBlueBand(); } RGBBuffer taskBuffer; int x1, x2, pix; byte[] r, g, b; for (n = 1; n < rndTskFutures.length; ++n) { try { taskBuffer = (RGBBuffer) rndTskFutures[n].get(); r = taskBuffer.getRedBand(); g = taskBuffer.getGreenBand(); b = taskBuffer.getBlueBand(); for (x2 = 0; x2 < sizeX2; ++x2) { for (x1 = 0; x1 < sizeX1; ++x1) { pix = sizeX1*x2+x1; red[pix] = (byte) (red[pix]+r[pix]); green[pix] = (byte) (green[pix]+g[pix]); blue[pix] = (byte) (blue[pix]+b[pix]); } } } catch (Exception e) { if (e instanceof QuantizationException) throw (QuantizationException) e; throw (RuntimeException) e; } } performanceStats.endRendering(); if (rndDataBuf == null) return new RGBBuffer(sizeX1, sizeX2); return rndDataBuf; | render(buf, planeDef); return buf; | RGBBuffer render(Renderer ctx, PlaneDef planeDef) throws IOException, QuantizationException { //Set the rendering context for the current invocation. renderer = ctx; RenderingStats performanceStats = renderer.getStats(); //Initialize sizeX1 and sizeX2 according to the plane. initAxesSize(planeDef, renderer.getMetadata()); //Process each active wavelength. If their number N > 1, then //process N-1 async and one in the current thread. If N = 1, //just use the current thread. RenderHSBWaveTask[] tasks = makeRndTasks(planeDef); performanceStats.startRendering(); int n = tasks.length; Future[] rndTskFutures = new Future[n]; //[0] unused. //CmdProcessor processor = Env.getProcessor(); ExecutorService processor = Executors.newCachedThreadPool();//j.m while (0 < --n) rndTskFutures[n] = processor.submit(tasks[n]); //j.m exec(tasks[n]); RGBBuffer rndDataBuf = null; byte[] red = null, green = null, blue = null; if (n == 0) { rndDataBuf = (RGBBuffer) tasks[0].call(); red = rndDataBuf.getRedBand(); green = rndDataBuf.getGreenBand(); blue = rndDataBuf.getBlueBand(); } //Wait for all forked tasks (if any) to complete. //When a task completes, assemble its RGB buffer into rndDataBuf. RGBBuffer taskBuffer; int x1, x2, pix; byte[] r, g, b; for (n = 1; n < rndTskFutures.length; ++n) { try { taskBuffer = (RGBBuffer) rndTskFutures[n].get();//j.m getResult(); r = taskBuffer.getRedBand(); g = taskBuffer.getGreenBand(); b = taskBuffer.getBlueBand(); for (x2 = 0; x2 < sizeX2; ++x2) { for (x1 = 0; x1 < sizeX1; ++x1) { pix = sizeX1*x2+x1; red[pix] = (byte) (red[pix]+r[pix]); green[pix] = (byte) (green[pix]+g[pix]); blue[pix] = (byte) (blue[pix]+b[pix]); } } } catch (Exception e) { if (e instanceof QuantizationException) throw (QuantizationException) e; throw (RuntimeException) e; //B/c call() only throws QuantizationException, it must be RE. } } performanceStats.endRendering(); if (rndDataBuf == null) //No active channel, return a black image. return new RGBBuffer(sizeX1, sizeX2); //Done. return rndDataBuf; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/64e6d912272b039f986c1a36d1ca930cc5578578/HSBStrategy.java/buggy/components/rendering/src/omeis/providers/re/HSBStrategy.java |
public CGCILoader(HiViewer viewer, Set images) | public CGCILoader(HiViewer viewer, Set images, boolean refresh) | public CGCILoader(HiViewer viewer, Set images) { super(viewer); this.images = images; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/CGCILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/CGCILoader.java |
this.refresh = refresh; | public CGCILoader(HiViewer viewer, Set images) { super(viewer); this.images = images; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/CGCILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/CGCILoader.java |
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viewer.setHierarchyRoots((Set) result, false); | viewer.setHierarchyRoots((Set) result, false, refresh); | public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; //Async cancel. viewer.setHierarchyRoots((Set) result, false); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/CGCILoader.java/buggy/SRC/org/openmicroscopy/shoola/agents/hiviewer/CGCILoader.java |
this.name = RubyString.newString(ruby, name); this.script = RubyString.newString(ruby, script); } | this.name = RubyString.newString(ruby, name); this.script = RubyString.newString(ruby, script); } | EvalThread(String name, String script) { this.name = RubyString.newString(ruby, name); this.script = RubyString.newString(ruby, script); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
ruby.getRuntime().loadScript(name, script, false); out.close(); } | try { ruby.getRuntime().loadScript(name, script, false); } finally { out.close(); } } | public void run() { ruby.getRuntime().loadScript(name, script, false); out.close(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
super(name); } | super(name); } | public TestRubyBase(String name) { super(name); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); | pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); | protected String eval(String script) { pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); // ruby.getRuntime().setOutputStream(out); // ruby.getRuntime().setErrorStream(out); RubyIO lStream = new RubyIO(ruby); lStream.initIO(null, out, null); ruby.setGlobalVar("$stdout", lStream); ruby.setGlobalVar("$>", lStream); lStream = (RubyIO) ruby.getGlobalVar("$stderr"); lStream.initIO(null, out, null); ruby.setGlobalVar("$stderr", lStream); new EvalThread("test", script).start(); while ((output = in.readLine()) != null) { result.append(output); } } catch (Exception ex) { throw new RuntimeException(ex.getMessage()); } return result.toString(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); RubyIO lStream = new RubyIO(ruby); lStream.initIO(null, out, null); ruby.setGlobalVar("$stdout", lStream); ruby.setGlobalVar("$>", lStream); lStream = (RubyIO) ruby.getGlobalVar("$stderr"); lStream.initIO(null, out, null); ruby.setGlobalVar("$stderr", lStream); new EvalThread("test", script).start(); while ((output = in.readLine()) != null) { result.append(output); } } catch (Exception ex) { throw new RuntimeException(ex.getMessage()); } return result.toString(); } | String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); RubyIO lStream = new RubyIO(ruby); lStream.initIO(null, out, null); ruby.setGlobalVar("$stdout", lStream); ruby.setGlobalVar("$>", lStream); lStream = (RubyIO) ruby.getGlobalVar("$stderr"); lStream.initIO(null, out, null); ruby.setGlobalVar("$stderr", lStream); new EvalThread("test", script).start(); while ((output = in.readLine()) != null) { result.append(output); } } catch (Exception ex) { throw new RuntimeException(ex.getMessage()); } return result.toString(); } | protected String eval(String script) { pipeIn = new PipedInputStream(); in = new BufferedReader(new InputStreamReader(pipeIn)); String output = null; StringBuffer result = new StringBuffer(); try { out = new PrintStream(new PipedOutputStream(pipeIn), true); // ruby.getRuntime().setOutputStream(out); // ruby.getRuntime().setErrorStream(out); RubyIO lStream = new RubyIO(ruby); lStream.initIO(null, out, null); ruby.setGlobalVar("$stdout", lStream); ruby.setGlobalVar("$>", lStream); lStream = (RubyIO) ruby.getGlobalVar("$stderr"); lStream.initIO(null, out, null); ruby.setGlobalVar("$stderr", lStream); new EvalThread("test", script).start(); while ((output = in.readLine()) != null) { result.append(output); } } catch (Exception ex) { throw new RuntimeException(ex.getMessage()); } return result.toString(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException ex) { } } | try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException ex) { } } | public void tearDown() { try { if (in != null) in.close(); if (out != null) out.close(); } catch (IOException ex) { } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/7f6ab64381d604b2fe48f73bcfae05c88ebb3ceb/TestRubyBase.java/buggy/org/jruby/test/TestRubyBase.java |
handleShowProperties((ShowProperties) ae); | handleShowProperties((ShowProperties) ae); | public void eventFired(AgentEvent ae) { if (ae instanceof ShowProperties) handleShowProperties((ShowProperties) ae); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a4d9266809d3b97be3f024727acd05038573d4c0/TreeViewerAgent.java/clean/SRC/org/openmicroscopy/shoola/agents/treeviewer/TreeViewerAgent.java |
for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) | for (Enumeration enumeration = _request.getParameterNames(); enumeration.hasMoreElements();) | final public String toString () { StringBuffer sb = new StringBuffer(); String eol = java.lang.System.getProperty("line.separator"); for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) { String key = (String) enum.nextElement(); String[] value = _request.getParameterValues(key); for (int x = 0; value != null && x < value.length; x++) { sb.append(key).append("=").append(value[x]).append(eol); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/66b6fa23bd4cbc41e75a36f1705ebb0db3d2f013/Form.java/buggy/webmacro/src/org/webmacro/servlet/Form.java |
String key = (String) enum.nextElement(); | String key = (String) enumeration.nextElement(); | final public String toString () { StringBuffer sb = new StringBuffer(); String eol = java.lang.System.getProperty("line.separator"); for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) { String key = (String) enum.nextElement(); String[] value = _request.getParameterValues(key); for (int x = 0; value != null && x < value.length; x++) { sb.append(key).append("=").append(value[x]).append(eol); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/66b6fa23bd4cbc41e75a36f1705ebb0db3d2f013/Form.java/buggy/webmacro/src/org/webmacro/servlet/Form.java |
return sb.toString(); } | final public String toString () { StringBuffer sb = new StringBuffer(); String eol = java.lang.System.getProperty("line.separator"); for (Enumeration enum = _request.getParameterNames(); enum.hasMoreElements();) { String key = (String) enum.nextElement(); String[] value = _request.getParameterValues(key); for (int x = 0; value != null && x < value.length; x++) { sb.append(key).append("=").append(value[x]).append(eol); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/66b6fa23bd4cbc41e75a36f1705ebb0db3d2f013/Form.java/buggy/webmacro/src/org/webmacro/servlet/Form.java |
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int numberOfMillisecondsInTheFuture = 5000; | int numberOfMillisecondsInTheFuture = 10000; | public void loadPlugins() { // Add presence and message listeners // we listen for these to force open a 1-1 peer chat window from other operators if // one isn't already open PacketFilter workspaceMessageFilter = new PacketTypeFilter(Message.class); // Add the packetListener to this instance SparkManager.getSessionManager().getConnection().addPacketListener(this, workspaceMessageFilter); // Make presence available to anonymous requests, if from anonymous user in the system. PacketListener workspacePresenceListener = new PacketListener() { public void processPacket(Packet packet) { Presence presence = (Presence)packet; if (presence != null && presence.getProperty("anonymous") != null) { boolean isAvailable = statusBox.getPresence().getMode() == Presence.Mode.available; Presence reply = new Presence(Presence.Type.available); if (!isAvailable) { reply.setType(Presence.Type.unavailable); } reply.setTo(presence.getFrom()); SparkManager.getSessionManager().getConnection().sendPacket(reply); } } }; SparkManager.getSessionManager().getConnection().addPacketListener(workspacePresenceListener, new PacketTypeFilter(Presence.class)); // Send Available status final Presence presence = SparkManager.getWorkspace().getStatusBar().getPresence(); SparkManager.getSessionManager().changePresence(presence); // Load Plugins SwingWorker worker = new SwingWorker() { public Object construct() { try { Thread.sleep(100); } catch (InterruptedException e) { Log.error("Unable to sleep thread.", e); } return "ok"; } public void finished() { final PluginManager pluginManager = PluginManager.getInstance(); pluginManager.loadPlugins(); pluginManager.initializePlugins(); } }; worker.start(); int numberOfMillisecondsInTheFuture = 5000; // 5 sec Date timeToRun = new Date(System.currentTimeMillis() + numberOfMillisecondsInTheFuture); Timer timer = new Timer(); timer.schedule(new TimerTask() { public void run() { SwingUtilities.invokeLater(new Runnable() { public void run() { final Iterator offlineMessage = offlineMessages.iterator(); while (offlineMessage.hasNext()) { Message offline = (Message)offlineMessage.next(); handleOfflineMessage(offline); } } }); } }, timeToRun); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/e3a7a307a8f9a8e562406bb4e0820d56a5810759/Workspace.java/buggy/src/java/org/jivesoftware/spark/Workspace.java |
public ModelBased map (Filterable source){ | public ModelBased map (Filterable source){ | public ModelBased map (Filterable source){ // TODO take any object. just like filter() Filterable o = this.filter("MAPPING...",source); return (ModelBased) model2target.get(o); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0aa4af63b981e511b5fb82621bc6293945ca0d64/ModelMapper.java/clean/components/common/src/ome/util/ModelMapper.java |
public AnnotateAction(TreeViewer model) { super(model); name = NAME; //putValue(Action.NAME, NAME); putValue(Action.SHORT_DESCRIPTION, UIUtilities.formatToolTipText(DESCRIPTION)); IconManager im = IconManager.getInstance(); putValue(Action.SMALL_ICON, im.getIcon(IconManager.ANNOTATION)); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java |
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description = DESCRIPTION; | public AnnotateAction(TreeViewer model) { super(model); name = NAME; //putValue(Action.NAME, NAME); putValue(Action.SHORT_DESCRIPTION, UIUtilities.formatToolTipText(DESCRIPTION)); IconManager im = IconManager.getInstance(); putValue(Action.SMALL_ICON, im.getIcon(IconManager.ANNOTATION)); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java |
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Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); | setValuesFor(selectedDisplay.getUserObject()); | protected void onDisplayChange(TreeImageDisplay selectedDisplay) { if (selectedDisplay == null) { setEnabled(false); return; } Browser browser = model.getSelectedBrowser(); if (browser != null) { if (browser.getSelectedDisplays().length > 1) { Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); return; } } Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java |
Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); | setValuesFor(selectedDisplay.getUserObject()); | protected void onDisplayChange(TreeImageDisplay selectedDisplay) { if (selectedDisplay == null) { setEnabled(false); return; } Browser browser = model.getSelectedBrowser(); if (browser != null) { if (browser.getSelectedDisplays().length > 1) { Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); return; } } Object ho = selectedDisplay.getUserObject(); setEnabled((ho instanceof ImageData) || (ho instanceof DatasetData)); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/ea7509babe2344eb702969105eb77096cc5b6bcf/AnnotateAction.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/actions/AnnotateAction.java |
return (int) (a*(x-tW)+b); | return (int) (a*y+b); | int convertGraphicsIntoReal(int x) { int b = control.getGlobalMaximum(); double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; return (int) (a*(x-tW)+b); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/de5f198f3677f9aa6bbdd6719a3abfc6406f1479/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
public void setPaneIndex(int index) | public void setPaneIndex(int index, ImageDisplay node) | public void setPaneIndex(int index) { if (index != SEARCH_PANEL && index != ANNOTATION_PANEL) throw new IllegalArgumentException("Pane index not valid."); if (model.getPaneIndex() == index) return; model.setPaneIndex(index); view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); view.setSelectedPane(index); if (index != ANNOTATION_PANEL) discardAnnotation(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java |
view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); | public void setPaneIndex(int index) { if (index != SEARCH_PANEL && index != ANNOTATION_PANEL) throw new IllegalArgumentException("Pane index not valid."); if (model.getPaneIndex() == index) return; model.setPaneIndex(index); view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); view.setSelectedPane(index); if (index != ANNOTATION_PANEL) discardAnnotation(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java |
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if (node == null) view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); else firePropertyChange(ClipBoard.LOCALIZE_IMAGE_DISPLAY, null, node); | public void setPaneIndex(int index) { if (index != SEARCH_PANEL && index != ANNOTATION_PANEL) throw new IllegalArgumentException("Pane index not valid."); if (model.getPaneIndex() == index) return; model.setPaneIndex(index); view.onDisplayChange( model.getParentModel().getBrowser().getSelectedDisplay()); view.setSelectedPane(index); if (index != ANNOTATION_PANEL) discardAnnotation(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b4992016524102ee0a5c7465d4cc7a94e9ffce2d/ClipBoardComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/ClipBoardComponent.java |
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threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); | threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode(), iVisited.getVarNode()), self); | public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { SourcePosition position = threadContext.getPosition(); Block tmpBlock = threadContext.beginCallArgs(); IRubyObject recv = null; try { recv = eval(iVisited.getIterNode()); } finally { threadContext.setPosition(position); threadContext.endCallArgs(tmpBlock); } result = recv.getMetaClass().call(recv, "each", IRubyObject.NULL_ARRAY, CallType.NORMAL); return; } catch (RetryJump retry) { } } } catch (BreakJump bExcptn) { IRubyObject breakValue = bExcptn.getBreakValue(); result = breakValue == null ? runtime.getNil() : breakValue; } finally { threadContext.getIterStack().pop(); threadContext.getBlockStack().pop(); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/95597cee751b3d52aa89d777e164e620f649ade9/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java |
threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); | threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode(), iVisited.getVarNode()), self); | public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVisited.getIterNode()); return; } catch (RetryJump rExcptn) { } } } catch (BreakJump bExcptn) { IRubyObject breakValue = bExcptn.getBreakValue(); result = breakValue == null ? runtime.getNil() : breakValue; } finally { threadContext.getIterStack().pop(); threadContext.getBlockStack().pop(); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/95597cee751b3d52aa89d777e164e620f649ade9/EvaluateVisitor.java/clean/src/org/jruby/evaluator/EvaluateVisitor.java |
super.paintComponent(g); | public void paintComponent(Graphics g) { Graphics2D g2D = (Graphics2D) g; g2D.setColor(bgColor); g2D.fillRect(0, 0, WIDTH, HEIGHT); Font font = g2D.getFont(); FontMetrics fontMetrics = g2D.getFontMetrics(); int hFont = fontMetrics.getHeight(); Rectangle2D rInput = font.getStringBounds("(1) Input", g2D.getFontRenderContext()); Rectangle2D rUpper= font.getStringBounds("upper", g2D.getFontRenderContext()); int wInput = (int) rInput.getWidth(); int wUpper = (int) rUpper.getWidth(); // grid AffineTransform transform = new AffineTransform(); // 140/10 = 14 then middle = 14/2 transform.translate(leftBorder+70, topBorder+70); transform.scale(1, -1); transform.scale(10, 10); g2D.setPaint(gridColor); GeneralPath path = new GeneralPath(); for (int i = -7; i <= 7; i++) { path.moveTo(i, -7); path.lineTo(i, 7); } for (int i = -7; i <= 7; i++) { path.moveTo(-7, i); path.lineTo(7, i); } g2D.draw(transform.createTransformedShape(path)); g2D.setColor(axisColor); //y-axis g2D.drawLine(leftBorder, topBorder-8, leftBorder, tS+5); g2D.drawLine(leftBorder, topBorder-8, leftBorder-3, topBorder-5); g2D.drawLine(leftBorder, topBorder-8, leftBorder+3, topBorder-5); g2D.drawLine(leftBorder-5, topBorder, leftBorder, topBorder); //x-axis g2D.drawLine(leftBorder-5, tS, lS+8, tS); g2D.drawLine(lS+5, tS-3, lS+8, tS); g2D.drawLine(lS+5, tS+3, lS+8, tS); g2D.drawLine(lS, tS, lS, tS+5); //output cursor start int xStartOutputPoints[] = {xStartOutput1, xStartOutput2, xStartOutput3}; int yStartOutputPoints[] = {yStartOutput1, yStartOutput2, yStartOutput3}; GeneralPath filledPolygonStartOutput = new GeneralPath(); filledPolygonStartOutput.moveTo(xStartOutputPoints[0], yStartOutputPoints[0]); for (int index = 1; index < xStartOutputPoints.length; index++) filledPolygonStartOutput.lineTo(xStartOutputPoints[index], yStartOutputPoints[index]); filledPolygonStartOutput.closePath(); g2D.setColor(ostartColor); g2D.fill(filledPolygonStartOutput); //output cursor end output int xEndOutputPoints[] = {xEndOutput1, xEndOutput2, xEndOutput3}; int yEndOutputPoints[] = {yEndOutput1, yEndOutput2, yEndOutput3}; GeneralPath filledPolygonEndOutput = new GeneralPath(); filledPolygonEndOutput.moveTo(xEndOutputPoints[0], yEndOutputPoints[0]); for (int index = 1; index < xEndOutputPoints.length; index++) filledPolygonEndOutput.lineTo(xEndOutputPoints[index], yEndOutputPoints[index]); filledPolygonEndOutput.closePath(); g2D.setColor(oendColor); g2D.fill(filledPolygonEndOutput); g2D.drawString("lower", leftBorder+10, tS+hFont); g2D.drawString("upper", lS-wUpper-10, tS+hFont); g2D.drawString("(1) Input", leftBorder+square/2-wInput/2, tS+bottomBorder/2+hFont); g2D.drawLine(rStart-1, (int) startPt.getY(), rStart-1, tS2); g2D.drawLine(rEnd, tS2, rEnd, (int) endPt.getY()); //set line color g2D.setColor(lineColor); g2D.setStroke(new BasicStroke(1.5f)); //drawline g2D.drawLine(leftBorder+1, (int) startPt.getY(), rStart-1, (int) startPt.getY()); g2D.drawLine(rEnd+1, (int) endPt.getY(), lS, (int) endPt.getY()); //Fixed line. g2D.setColor(fixedLineColor); g2D.drawLine(rStart, tS2, rEnd, tS2); if (isSelected) { g2D.setColor(borderColor); g2D.draw(new Rectangle2D.Double(0, 0, WIDTH, HEIGHT)); } else { g2D.setColor(layerColor); g2D.fillRect(0, 0, WIDTH, HEIGHT); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6a28b54c142c80cf786f76c45b6be256d92fd0bb/PlaneSlicingPanel.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/PlaneSlicingPanel.java |
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return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/VCallNode.java/clean/src/org/jruby/ast/VCallNode.java |
throw lastCallType == CallType.VARIABLE ? runtime.newNameError(msg) : runtime.newNoMethodError(msg); | throw lastCallType == CallType.VARIABLE ? runtime.newNameError(msg, name) : runtime.newNoMethodError(msg, name); | public static IRubyObject method_missing(IRubyObject recv, IRubyObject[] args) { IRuby runtime = recv.getRuntime(); if (args.length == 0) { throw recv.getRuntime().newArgumentError("no id given"); } String name = args[0].asSymbol(); String description = recv.callMethod(runtime.getCurrentContext(), "inspect").toString(); boolean noClass = description.length() > 0 && description.charAt(0) == '#'; ThreadContext tc = runtime.getCurrentContext(); Visibility lastVis = tc.getLastVisibility(); CallType lastCallType = tc.getLastCallType(); String format = lastVis.errorMessageFormat(lastCallType, name); String msg = new PrintfFormat(format).sprintf(new Object[] { name, description, noClass ? "" : ":", noClass ? "" : recv.getType().getName()}); throw lastCallType == CallType.VARIABLE ? runtime.newNameError(msg) : runtime.newNoMethodError(msg); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1278c5bb3507a052d150d814f15453542ae41aed/RubyKernel.java/buggy/src/org/jruby/RubyKernel.java |
throw runtime.newNameError(message); | throw runtime.newNameError(message, tag); | public static IRubyObject rbThrow(IRubyObject recv, IRubyObject[] args) { IRuby runtime = recv.getRuntime(); String tag = args[0].asSymbol(); String[] catches = runtime.getCurrentContext().getActiveCatches(); String message = "uncaught throw '" + tag + '\''; //Ordering of array traversal not important, just intuitive for (int i = catches.length - 1 ; i >= 0 ; i--) { if (tag.equals(catches[i])) { //Catch active, throw for catch to handle JumpException je = new JumpException(JumpException.JumpType.ThrowJump); je.setPrimaryData(tag); je.setSecondaryData(args.length > 1 ? args[1] : runtime.getNil()); throw je; } } //No catch active for this throw throw runtime.newNameError(message); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1278c5bb3507a052d150d814f15453542ae41aed/RubyKernel.java/buggy/src/org/jruby/RubyKernel.java |
getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("control N"), "searchContacts"); getActionMap().put("searchContacts", new AbstractAction("searchContacts") { public void actionPerformed(ActionEvent evt) { SparkManager.getUserManager().searchContacts("", SparkManager.getChatManager().getChatContainer()); } }); | private void addKeyNavigation() { KeyStroke leftStroke = KeyStroke.getKeyStroke(KeyEvent.VK_LEFT, 0); String leftStrokeString = org.jivesoftware.spark.util.StringUtils.keyStroke2String(leftStroke); // Handle Left Arrow this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("alt " + leftStrokeString + ""), "navigateLeft"); this.getActionMap().put("navigateLeft", new AbstractAction("navigateLeft") { public void actionPerformed(ActionEvent evt) { int selectedIndex = getSelectedIndex(); if (selectedIndex > 0) { setSelectedIndex(selectedIndex - 1); } else { setSelectedIndex(getTabCount() - 1); } } }); KeyStroke rightStroke = KeyStroke.getKeyStroke(KeyEvent.VK_RIGHT, 0); String rightStrokeString = org.jivesoftware.spark.util.StringUtils.keyStroke2String(rightStroke); // Handle Right Arrow this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("alt " + rightStrokeString + ""), "navigateRight"); this.getActionMap().put("navigateRight", new AbstractAction("navigateRight") { public void actionPerformed(ActionEvent evt) { int selectedIndex = getSelectedIndex(); if (selectedIndex > -1) { int count = getTabCount(); if (selectedIndex == (count - 1)) { setSelectedIndex(0); } else { setSelectedIndex(selectedIndex + 1); } } } }); this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("ESCAPE"), "escape"); this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("Ctrl W"), "escape"); this.getActionMap().put("escape", new AbstractAction("escape") { public void actionPerformed(ActionEvent evt) { closeActiveRoom(); } }); KeyStroke appleStroke = KeyStroke.getKeyStroke(Toolkit.getDefaultToolkit().getMenuShortcutKeyMask(), 0); String appleString = org.jivesoftware.spark.util.StringUtils.keyStroke2String(appleStroke); // Handle Apple Key W this.getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke(appleString + "w"), "appleStroke"); this.getActionMap().put("appleStroke", new AbstractAction("appleStroke") { public void actionPerformed(ActionEvent evt) { closeActiveRoom(); } }); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } | ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { closeTab(chatRoom); | public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
} | public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); | ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } | public void actionPerformed(ActionEvent e) { for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasJoined(room, userid); } | handleMessageNotification(chatRoom); | public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasJoined(room, userid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
((ChatRoomListener)iter.next()).userHasLeft(room, userid); | ((ChatRoomListener)iter.next()).userHasJoined(room, userid); | public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setText(room.getTabTitle() + appendedMessage); if (room instanceof ChatRoomImpl) { checkNotificationPreferences(room); } makeTabRed(room); } boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); } } catch (Exception ex) { Log.error("Issue in ChatRooms with tab location.", ex); | final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); | public void run() { try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setText(room.getTabTitle() + appendedMessage); // Check notifications. if (room instanceof ChatRoomImpl) { checkNotificationPreferences(room); } makeTabRed(room); } boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); } } catch (Exception ex) { Log.error("Issue in ChatRooms with tab location.", ex); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); | boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); } } catch (Exception ex) { Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); } SparkManager.getAlertManager().stopFlashing(chatFrame); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); | Log.error("Issue in ChatRooms with tab location.", ex); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); } } catch (Exception ex) { Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); } SparkManager.getAlertManager().stopFlashing(chatFrame); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
SparkManager.getAlertManager().stopFlashing(chatFrame); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); } } catch (Exception ex) { Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); } SparkManager.getAlertManager().stopFlashing(chatFrame); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setText(room.getTabTitle() + appendedMessage); if (room instanceof ChatRoomImpl) { checkNotificationPreferences(room); } makeTabRed(room); } | public void run() { try { boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); } } catch (Exception ex) { Log.error("Issue in ChatRooms with tab location.", ex); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/37d2c9c1910f8cad82e65ab912959a96c5121978/ChatContainer.java/clean/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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public RubyObject reverse_bang() { modify(); Collections.reverse(list); return this; | public RubyArray reverse_bang() { if (list.size() <= 1) { return nilArray(ruby); } modify(); Collections.reverse(list); return this; | public RubyObject reverse_bang() { modify(); Collections.reverse(list); return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0335f0acaf11ca0feb41907f65e7274f8ed49fc3/RubyArray.java/clean/org/jruby/RubyArray.java |
receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), new IRubyObject[] {value}, 0); | receiver.getInternalClass().call(receiver, iVisited.getName(), new IRubyObject[] {value}, 0); | public void visitCallNode(CallNode iVisited) { EvaluateVisitor evaluator = EvaluateVisitor.createVisitor(self); IRubyObject receiver = evaluator.eval(iVisited.getReceiverNode()); if (iVisited.getArgsNode() == null) { // attribute set. receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), new IRubyObject[] {value}, 0); } else { // element set RubyArray args = (RubyArray) evaluator.eval(iVisited.getArgsNode()); args.append(value); receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), args.toJavaArray(), 0); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/AssignmentVisitor.java/buggy/org/jruby/evaluator/AssignmentVisitor.java |
receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), args.toJavaArray(), 0); | receiver.getInternalClass().call(receiver, iVisited.getName(), args.toJavaArray(), 0); | public void visitCallNode(CallNode iVisited) { EvaluateVisitor evaluator = EvaluateVisitor.createVisitor(self); IRubyObject receiver = evaluator.eval(iVisited.getReceiverNode()); if (iVisited.getArgsNode() == null) { // attribute set. receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), new IRubyObject[] {value}, 0); } else { // element set RubyArray args = (RubyArray) evaluator.eval(iVisited.getArgsNode()); args.append(value); receiver.getInternalClass().call(receiver.toRubyObject(), iVisited.getName(), args.toJavaArray(), 0); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/AssignmentVisitor.java/buggy/org/jruby/evaluator/AssignmentVisitor.java |
env.getBrowserManager().addBrowser(controller); | public void loadDataset(int datasetID) { DataManagementService dms = registry.getDataManagementService(); DatasetData dataset; final BrowserModel model = new BrowserModel(); model.setLayoutMethod(new NumColsLayoutMethod(8)); BrowserTopModel topModel = new BrowserTopModel(); BPalette modePalette = PaletteFactory.getMainPalette(model,topModel); topModel.addPalette("Modes",modePalette); BPalette paintPalette = PaletteFactory.getPaintModePalette(model,topModel); topModel.addPalette("Overlays",paintPalette); BPalette zoomPalette = PaletteFactory.getZoomPalette(model,topModel); topModel.addPalette(UIConstants.ZOOM_PALETTE_NAME,zoomPalette); modePalette.setOffset(0,0); paintPalette.setOffset(0,75); zoomPalette.setOffset(0,125); BrowserView view = new BrowserView(model,topModel); BrowserController controller = new BrowserController(model,topModel,view); controller.setStatusView(new StatusBar()); int count = env.getBrowserManager().getBrowserCount(); env.getBrowserManager().addBrowser(controller); final int browserIndex = count; final BrowserInternalFrame bif = new BrowserInternalFrame(controller); StatusBar status = controller.getStatusView(); tf.addToDesktop(bif,TopFrame.PALETTE_LAYER); bif.setClosable(true); bif.setIconifiable(true); bif.setMaximizable(true); bif.setResizable(true); bif.show(); final int theDataset = datasetID; Thread retrieveThread = new Thread() { public void run() { try { DataManagementService dms = registry.getDataManagementService(); DatasetData dataset = dms.retrieveDataset(theDataset); model.setDataset(dataset); bif.setTitle("Image Browser: "+dataset.getName()); loadDataset(browserIndex,dataset); } catch(DSAccessException dsae) { UserNotifier notifier = registry.getUserNotifier(); notifier.notifyError("Data retrieval failure", "Unable to retrieve dataset (id = " + theDataset + ")", dsae); return; } catch(DSOutOfServiceException dsoe) { // pop up new login window (eventually caught) throw new RuntimeException(dsoe); } } }; retrieveThread.start(); writeStatusImmediately(status,"Loading dataset from DB..."); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
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env.getBrowserManager().addBrowser(bif); | public void loadDataset(int datasetID) { DataManagementService dms = registry.getDataManagementService(); DatasetData dataset; final BrowserModel model = new BrowserModel(); model.setLayoutMethod(new NumColsLayoutMethod(8)); BrowserTopModel topModel = new BrowserTopModel(); BPalette modePalette = PaletteFactory.getMainPalette(model,topModel); topModel.addPalette("Modes",modePalette); BPalette paintPalette = PaletteFactory.getPaintModePalette(model,topModel); topModel.addPalette("Overlays",paintPalette); BPalette zoomPalette = PaletteFactory.getZoomPalette(model,topModel); topModel.addPalette(UIConstants.ZOOM_PALETTE_NAME,zoomPalette); modePalette.setOffset(0,0); paintPalette.setOffset(0,75); zoomPalette.setOffset(0,125); BrowserView view = new BrowserView(model,topModel); BrowserController controller = new BrowserController(model,topModel,view); controller.setStatusView(new StatusBar()); int count = env.getBrowserManager().getBrowserCount(); env.getBrowserManager().addBrowser(controller); final int browserIndex = count; final BrowserInternalFrame bif = new BrowserInternalFrame(controller); StatusBar status = controller.getStatusView(); tf.addToDesktop(bif,TopFrame.PALETTE_LAYER); bif.setClosable(true); bif.setIconifiable(true); bif.setMaximizable(true); bif.setResizable(true); bif.show(); final int theDataset = datasetID; Thread retrieveThread = new Thread() { public void run() { try { DataManagementService dms = registry.getDataManagementService(); DatasetData dataset = dms.retrieveDataset(theDataset); model.setDataset(dataset); bif.setTitle("Image Browser: "+dataset.getName()); loadDataset(browserIndex,dataset); } catch(DSAccessException dsae) { UserNotifier notifier = registry.getUserNotifier(); notifier.notifyError("Data retrieval failure", "Unable to retrieve dataset (id = " + theDataset + ")", dsae); return; } catch(DSOutOfServiceException dsoe) { // pop up new login window (eventually caught) throw new RuntimeException(dsoe); } } }; retrieveThread.start(); writeStatusImmediately(status,"Loading dataset from DB..."); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
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model.addThumbnail(t); | thumbnails.add(t); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.setLayoutMethod(lm); CompletePlate plate = new CompletePlate(); for(Iterator iter = refPlateList.iterator(); iter.hasNext();) { ImagePlate ip = (ImagePlate)iter.next(); plate.put(ip.getWell(),new Integer(ip.getImage().getID())); } boolean wellSized = false; for(int i=0;i<refInfo.getNumRows();i++) { for(int j=0;j<refInfo.getNumCols();j++) { String row = refInfo.getRowName(i); String col = refInfo.getColumnName(j); String well = row+col; List sampleList = (List)plate.get(well); if(sampleList.size() == 1) { Integer intVal = (Integer)sampleList.get(0); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); if(!wellSized) { lm.setWellWidth(image.getWidth(null)); lm.setWellHeight(image.getHeight(null)); wellSized = true; } ImageData data = new ImageData(); data.setID(sum.getID()); data.setName(sum.getName()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); ImageAnnotation annotation = (ImageAnnotation)refAnnotations.get(new Integer(sum.getID())); if(annotation != null) { tdm.getAttributeMap().putAttribute(annotation); } final Thumbnail t = new Thumbnail(image,tdm); lm.setIndex(t,i,j); final int theCount = count; final int theTotal = total; Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); } }; SwingUtilities.invokeLater(addTask); count++; } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } else { Image[] images = new Image[sampleList.size()]; ThumbnailDataModel[] models = new ThumbnailDataModel[sampleList.size()]; for(int k=0;k<sampleList.size();k++) { Integer intVal = (Integer)sampleList.get(k); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); ImageData data = new ImageData(); data.setID(pix.getID()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); images[k] = image; models[k] = tdm; count++; String message = ProgressMessageFormatter.format("Loaded image %n of %t...", count,total); status.processAdvanced(message); } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } final Thumbnail t = new Thumbnail(images,models); lm.setIndex(t,i,j); Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); } }; SwingUtilities.invokeLater(addTask); } } } Runnable finalTask = new Runnable() { public void run() { status.processSucceeded("All images loaded."); } }; SwingUtilities.invokeLater(finalTask); return; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
String message = ProgressMessageFormatter.format("Loaded image %n of %t...", count,total); status.processAdvanced(message); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.setLayoutMethod(lm); CompletePlate plate = new CompletePlate(); for(Iterator iter = refPlateList.iterator(); iter.hasNext();) { ImagePlate ip = (ImagePlate)iter.next(); plate.put(ip.getWell(),new Integer(ip.getImage().getID())); } boolean wellSized = false; for(int i=0;i<refInfo.getNumRows();i++) { for(int j=0;j<refInfo.getNumCols();j++) { String row = refInfo.getRowName(i); String col = refInfo.getColumnName(j); String well = row+col; List sampleList = (List)plate.get(well); if(sampleList.size() == 1) { Integer intVal = (Integer)sampleList.get(0); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); if(!wellSized) { lm.setWellWidth(image.getWidth(null)); lm.setWellHeight(image.getHeight(null)); wellSized = true; } ImageData data = new ImageData(); data.setID(sum.getID()); data.setName(sum.getName()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); ImageAnnotation annotation = (ImageAnnotation)refAnnotations.get(new Integer(sum.getID())); if(annotation != null) { tdm.getAttributeMap().putAttribute(annotation); } final Thumbnail t = new Thumbnail(image,tdm); lm.setIndex(t,i,j); final int theCount = count; final int theTotal = total; Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); } }; SwingUtilities.invokeLater(addTask); count++; } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } else { Image[] images = new Image[sampleList.size()]; ThumbnailDataModel[] models = new ThumbnailDataModel[sampleList.size()]; for(int k=0;k<sampleList.size();k++) { Integer intVal = (Integer)sampleList.get(k); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); ImageData data = new ImageData(); data.setID(pix.getID()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); images[k] = image; models[k] = tdm; count++; String message = ProgressMessageFormatter.format("Loaded image %n of %t...", count,total); status.processAdvanced(message); } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } final Thumbnail t = new Thumbnail(images,models); lm.setIndex(t,i,j); Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); } }; SwingUtilities.invokeLater(addTask); } } } Runnable finalTask = new Runnable() { public void run() { status.processSucceeded("All images loaded."); } }; SwingUtilities.invokeLater(finalTask); return; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
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model.addThumbnail(t); | String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); thumbnails.add(t); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.setLayoutMethod(lm); CompletePlate plate = new CompletePlate(); for(Iterator iter = refPlateList.iterator(); iter.hasNext();) { ImagePlate ip = (ImagePlate)iter.next(); plate.put(ip.getWell(),new Integer(ip.getImage().getID())); } boolean wellSized = false; for(int i=0;i<refInfo.getNumRows();i++) { for(int j=0;j<refInfo.getNumCols();j++) { String row = refInfo.getRowName(i); String col = refInfo.getColumnName(j); String well = row+col; List sampleList = (List)plate.get(well); if(sampleList.size() == 1) { Integer intVal = (Integer)sampleList.get(0); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); if(!wellSized) { lm.setWellWidth(image.getWidth(null)); lm.setWellHeight(image.getHeight(null)); wellSized = true; } ImageData data = new ImageData(); data.setID(sum.getID()); data.setName(sum.getName()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); ImageAnnotation annotation = (ImageAnnotation)refAnnotations.get(new Integer(sum.getID())); if(annotation != null) { tdm.getAttributeMap().putAttribute(annotation); } final Thumbnail t = new Thumbnail(image,tdm); lm.setIndex(t,i,j); final int theCount = count; final int theTotal = total; Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); } }; SwingUtilities.invokeLater(addTask); count++; } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } else { Image[] images = new Image[sampleList.size()]; ThumbnailDataModel[] models = new ThumbnailDataModel[sampleList.size()]; for(int k=0;k<sampleList.size();k++) { Integer intVal = (Integer)sampleList.get(k); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); ImageData data = new ImageData(); data.setID(pix.getID()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); images[k] = image; models[k] = tdm; count++; String message = ProgressMessageFormatter.format("Loaded image %n of %t...", count,total); status.processAdvanced(message); } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } final Thumbnail t = new Thumbnail(images,models); lm.setIndex(t,i,j); Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); } }; SwingUtilities.invokeLater(addTask); } } } Runnable finalTask = new Runnable() { public void run() { status.processSucceeded("All images loaded."); } }; SwingUtilities.invokeLater(finalTask); return; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
Thumbnail[] ts = new Thumbnail[thumbnails.size()]; thumbnails.toArray(ts); model.addThumbnails(ts); | public void run() { int count = 1; int total = refList.size(); PlateLayoutMethod lm = new PlateLayoutMethod(refInfo.getNumRows(), refInfo.getNumCols()); model.setLayoutMethod(lm); CompletePlate plate = new CompletePlate(); for(Iterator iter = refPlateList.iterator(); iter.hasNext();) { ImagePlate ip = (ImagePlate)iter.next(); plate.put(ip.getWell(),new Integer(ip.getImage().getID())); } boolean wellSized = false; for(int i=0;i<refInfo.getNumRows();i++) { for(int j=0;j<refInfo.getNumCols();j++) { String row = refInfo.getRowName(i); String col = refInfo.getColumnName(j); String well = row+col; List sampleList = (List)plate.get(well); if(sampleList.size() == 1) { Integer intVal = (Integer)sampleList.get(0); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); if(!wellSized) { lm.setWellWidth(image.getWidth(null)); lm.setWellHeight(image.getHeight(null)); wellSized = true; } ImageData data = new ImageData(); data.setID(sum.getID()); data.setName(sum.getName()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); ImageAnnotation annotation = (ImageAnnotation)refAnnotations.get(new Integer(sum.getID())); if(annotation != null) { tdm.getAttributeMap().putAttribute(annotation); } final Thumbnail t = new Thumbnail(image,tdm); lm.setIndex(t,i,j); final int theCount = count; final int theTotal = total; Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); } }; SwingUtilities.invokeLater(addTask); count++; } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } else { Image[] images = new Image[sampleList.size()]; ThumbnailDataModel[] models = new ThumbnailDataModel[sampleList.size()]; for(int k=0;k<sampleList.size();k++) { Integer intVal = (Integer)sampleList.get(k); ImageSummary sum = (ImageSummary)imageMap.get(intVal); try { Pixels pix = sum.getDefaultPixels().getPixels(); Image image = ps.getThumbnail(pix); ImageData data = new ImageData(); data.setID(pix.getID()); ThumbnailDataModel tdm = new ThumbnailDataModel(data); tdm.setValue(UIConstants.WELL_KEY_STRING,well); tdm.getAttributeMap().putAttribute(pix); images[k] = image; models[k] = tdm; count++; String message = ProgressMessageFormatter.format("Loaded image %n of %t...", count,total); status.processAdvanced(message); } catch(ImageServerException ise) { UserNotifier un = registry.getUserNotifier(); un.notifyError("ImageServer Error",ise.getMessage(),ise); status.processFailed("Error loading images."); return; } } final Thumbnail t = new Thumbnail(images,models); lm.setIndex(t,i,j); Runnable addTask = new Runnable() { public void run() { model.addThumbnail(t); } }; SwingUtilities.invokeLater(addTask); } } } Runnable finalTask = new Runnable() { public void run() { status.processSucceeded("All images loaded."); } }; SwingUtilities.invokeLater(finalTask); return; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
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Thumbnail[] ts = new Thumbnail[thumbnails.size()]; thumbnails.toArray(ts); model.addThumbnails(ts); | public void run() { status.processSucceeded("All images loaded."); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
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model.addThumbnail(t); | thumbnails.add(t); | public void run() { model.addThumbnail(t); String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
model.addThumbnail(t); | String message = ProgressMessageFormatter.format("Loaded image %n of %t...", theCount,theTotal); status.processAdvanced(message); thumbnails.add(t); | public void run() { model.addThumbnail(t); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
public void loadImage(int imageID) | public void loadImage(Thumbnail t) | public void loadImage(int imageID) { // TODO: fill in loadImage(int) } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
ThumbnailDataModel tdm = t.getModel(); int imageID = tdm.getID(); Pixels pixels = (Pixels)tdm.getAttributeMap().getAttribute("Pixels"); int pixelsID = pixels.getID(); loadImage(imageID,pixelsID); | public void loadImage(int imageID) { // TODO: fill in loadImage(int) } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/a74dcf148f6dd7ae6d4c17a9e0406afba262a755/BrowserAgent.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserAgent.java |
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: "UNKNOWN. Throwing exceptin")); | : "UNKNOWN. Throwing exception")); | public void write(FastWriter out, Context context) throws PropertyException, IOException { Broker broker = context.getBroker(); // the filename arg passed to us was a Macro, so // evaluate and check it now if (_macFilename != null) { _strFilename = _macFilename.evaluate(context).toString(); if (_strFilename == null || _strFilename.length() == 0) { throw makePropertyException("Filename cannot be null or empty"); } } if (_log.loggingDebug() && context.getCurrentLocation().indexOf(_strFilename) > -1) { // when in debug mode, output a warning if a template tries to include itself // there are situtations where this is desired, but it's good to make // the user aware of what they're doing _log.warning(context.getCurrentLocation() + " includes itself."); } // this should only be true if StrictCompatibility is set to false // and "as <something>" wasn't specified in the arg list if (_type == TYPE_DYNAMIC) _type = guessType(broker, _strFilename); if (_log.loggingDebug()) { _log.debug("Including '" + _strFilename + "' as " + ((_type == TYPE_MACRO) ? "MACRO" : (_type == TYPE_TEMPLATE) ? "TEMPLATE" : (_type == TYPE_TEXT) ? "TEXT" : "UNKNOWN. Throwing exceptin")); } Object toInclude = getThingToInclude(broker, _type, _strFilename); switch (_type) { case TYPE_MACRO: // during runtime evaluation of a template, // a TYPE_MACRO doesn't really work as expected. // we logged a warning above in build(), but // we still need to write it out as a template // so just fall through case TYPE_TEMPLATE: ((Template) toInclude).write(out, context); break; case TYPE_TEXT: // static types are strings out.write(toInclude.toString()); break; default: // should never happen throw makePropertyException("Unrecognized file type: " + _type); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/ff709ec8523aa5b42a000462169b11be88cd46de/IncludeDirective.java/buggy/webmacro/src/org/webmacro/directive/IncludeDirective.java |
double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; | double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; | int convertGraphicsIntoReal(int x) { int b = control.getGlobalMaximum(); double a = (double) (control.getGlobalMinimum()-b)/(double) rangeGraphics; return (int) (a*(x-tW)+b); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/83f676753e39a506a8cb86c443c49fa697ec99eb/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
autoResize(Math.max(0, index + position - 1)); | autoResize(Math.max(0, index + position)); | public void add(int index, Object element) { autoResize(Math.max(0, index + position - 1)); delegate.add(index + position, element); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
delegate.addAll(0, Collections.nCopies(-index, autoResizeObject)); position += -index; } else if (index >= delegate.size()) { | throw new UnsupportedOperationException("Cannot access an element left of the list"); } else if (index > delegate.size()) { | protected void autoResize(int index) { if (!autoResize) { return; } else if (index < 0) { delegate.addAll(0, Collections.nCopies(-index, autoResizeObject)); position += -index; } else if (index >= delegate.size()) { delegate.ensureCapacity(index); for (int i = delegate.size(); i <= index; i++) { delegate.add(autoResizeObject); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
for (int i = delegate.size(); i <= index; i++) { | for (int i = delegate.size(); i < index; i++) { | protected void autoResize(int index) { if (!autoResize) { return; } else if (index < 0) { delegate.addAll(0, Collections.nCopies(-index, autoResizeObject)); position += -index; } else if (index >= delegate.size()) { delegate.ensureCapacity(index); for (int i = delegate.size(); i <= index; i++) { delegate.add(autoResizeObject); } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
autoResize(index + position); | autoResize(index + position + 1); | public Object get(int index) { autoResize(index + position); return delegate.get(index + position); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
autoResize(index + position); | autoResize(index + position + 1); | public Object set(int index, Object element) { autoResize(index + position); return delegate.set(index + position, element); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/662c05593e6f402ddd6badcfa923a544ab949833/DefaultPointer.java/buggy/org/jruby/util/DefaultPointer.java |
FastWriter w = new FastWriter(System.out, "UTF8"); | FastWriter w = new FastWriter(System.out, context.getEncoding()); | public static void main(String arg[]) { Log.traceExceptions(true); Log.setLevel(Log.ALL); Log.setTarget(System.err); if (arg.length != 0) { System.out.println("Enabling log types"); Log.enableTypes(arg); } // Build a context WebMacro wm = null; Context context = null; try { wm = new WM(); context = wm.getContext(); Object names[] = { "prop" }; context.setProperty(names, "Example property"); } catch (Exception e) { e.printStackTrace(); } try { context.put("helloworld", "Hello World"); context.put("hello", "Hello"); context.put("file", "include.txt"); context.put("today", new Date()); TestObject[] fruits = { new TestObject("apple",false), new TestObject("lemon",true), new TestObject("pear",false), new TestObject("orange",true), new TestObject("watermelon",false), new TestObject("peach",false), new TestObject("lime",true) }; SelectList sl = new SelectList(fruits, 3); context.put("sl-fruits", sl); context.put("fruits", fruits); context.put("flipper", new TestObject("flip",false)); System.out.println("- - - - - - - - - - - - - - - - - - - -"); System.out.println("Context contains: helloWorld, hello, file, TestObject[] fruits, SelectList sl(fruits, 3), TestObject flipper"); System.out.println("- - - - - - - - - - - - - - - - - - - -"); Template t1 = new StreamTemplate(wm.getBroker(), new InputStreamReader(System.in)); t1.parse(); FastWriter w = new FastWriter(System.out, "UTF8"); System.out.println("*** RESULT ***"); t1.write(w,context); w.close(); System.out.println("*** DONE ***"); //System.out.println(result); } catch (Exception e) { e.printStackTrace(); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/9dc4324fb914abcbf2ec188e4eb77b1bf503f330/StreamTemplate.java/clean/webmacro/src/org/webmacro/engine/StreamTemplate.java |
panHandler = new BoundedDragPanHandler(null); | panHandler = new BoundedEdgePanHandler(); | private void init() { env = BrowserEnvironment.getInstance(); setBackground(new Color(192,192,192)); layoutMap = new HashMap(); footprint = new Rectangle2D.Double(0,0,0,0); // here we disable zoom/pan (TODO: save for later, reinstate on mode) removeInputEventListener(getZoomEventHandler()); removeInputEventListener(getPanEventHandler()); panHandler = new BoundedDragPanHandler(null); addInputEventListener(panHandler); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b927571573c6b14fb6e5653fcb9385cd15bd16be/BrowserView.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserView.java |
return "ImageDimension"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); | return "ImageDimension"+(attributeId==null ? ":Hash_"+this.hashCode() : ":Id_"+attributeId); | public String toString(){ return "ImageDimension"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/ImageDimension.java/clean/components/common/src/ome/model/ImageDimension.java |
super(parameters); | super( defs, parameters); | public PojosLoadHierarchyQueryDefinition(QueryParameter... parameters) { super(parameters); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/f990a7d35ce265e182121d562725175896db41f4/PojosLoadHierarchyQueryDefinition.java/clean/components/server/src/ome/services/query/PojosLoadHierarchyQueryDefinition.java |
Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = methods[i]; if (method.getName().equals(name)) { return method; | try { Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = methods[i]; if (method.getName().equals(name)) { return method; } | protected static Method findMethod(String name) { Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = methods[i]; if (method.getName().equals(name)) { return method; } } } return null; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/19ade509a8b0389eecc524e7e39c49aeaf9c65c7/QNameReflectionHelper.java/clean/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/impl/QNameReflectionHelper.java |
} catch (Throwable t) { | protected static Method findMethod(String name) { Class type = PropertyEditorHelper.loadClass("org.apache.xbean.spring.context.impl.QNameHelper"); if (type != null) { Method[] methods = type.getMethods(); for (int i = 0; i < methods.length; i++) { Method method = methods[i]; if (method.getName().equals(name)) { return method; } } } return null; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/19ade509a8b0389eecc524e7e39c49aeaf9c65c7/QNameReflectionHelper.java/clean/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/impl/QNameReflectionHelper.java |
|
public static RubyObject m_print(Ruby ruby, RubyObject args[]) { | public static RubyObject m_print(Ruby ruby, RubyModule rubyClass, RubyObject args[]) { | public static RubyObject m_print(Ruby ruby, RubyObject args[]) { for (int i = 0; i < args.length; i++) { if (args[i] != null) { System.out.print(((RubyString)args[i].funcall(ruby.intern("to_s"))).getString()); } } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/76d3fd1bbcdbd38082a9b8c19c593b06ed915280/RBKernel.java/buggy/org/jruby/core/RBKernel.java |
public static RubyObject m_puts(Ruby ruby, RubyObject args[]) { | public static RubyObject m_puts(Ruby ruby, RubyModule rubyClass, RubyObject args[]) { | public static RubyObject m_puts(Ruby ruby, RubyObject args[]) { if (args.length == 0) { System.out.println(); } else { for (int i = 0; i < args.length; i++) { if (args[i] != null) { System.out.println(((RubyString)args[i].funcall(ruby.intern("to_s"))).getString()); } } } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/76d3fd1bbcdbd38082a9b8c19c593b06ed915280/RBKernel.java/buggy/org/jruby/core/RBKernel.java |
ht.flush(); | public Object invoke(MethodInvocation arg0) throws Throwable { CurrentDetails.clear(); setDetails(); try { Object retVal = arg0.proceed(); ht.flush(); // TODO performance? but HInterceptor is flushing // after finally { clear } return retVal; } finally { CurrentDetails.clear(); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2752630e0bbf2c7a5f4bcfda3cff9f1e4a433664/EventHandler.java/clean/components/server/src/ome/tools/hibernate/EventHandler.java |
|
removeContactItem(jid); | RosterEntry rosterEntry = roster.getEntry(jid); if (rosterEntry != null) { boolean isUnfiled = true; for (RosterGroup group : rosterEntry.getGroups()) { isUnfiled = false; if (getContactGroup(group.getName()) == null) { ContactGroup contactGroup = addContactGroup(group.getName()); contactGroup.setVisible(false); contactGroup = getContactGroup(group.getName()); String name = rosterEntry.getName(); if (name == null) { name = rosterEntry.getUser(); } ContactItem contactItem = new ContactItem(name, rosterEntry.getUser()); contactGroup.addContactItem(contactItem); Presence presence = roster.getPresence(jid); contactItem.setPresence(presence); if (presence != null) { contactGroup.setVisible(true); } } else { ContactGroup contactGroup = getContactGroup(group.getName()); ContactItem item = offlineGroup.getContactItemByJID(jid); if (item == null) { item = contactGroup.getContactItemByJID(jid); } if (item == null) { String name = rosterEntry.getName(); if (name == null) { name = rosterEntry.getUser(); } item = new ContactItem(name, rosterEntry.getUser()); Presence presence = roster.getPresence(jid); item.setPresence(presence); if (presence != null) { contactGroup.addContactItem(item); contactGroup.fireContactGroupUpdated(); } else { offlineGroup.addContactItem(item); offlineGroup.fireContactGroupUpdated(); } } else { Presence presence = roster.getPresence(jid); item.setPresence(presence); updateUserPresence(presence); contactGroup.fireContactGroupUpdated(); } } } final Set<String> groupSet = new HashSet<String>(); jids = addresses.iterator(); while (jids.hasNext()) { jid = (String)jids.next(); rosterEntry = roster.getEntry(jid); for (RosterGroup g : rosterEntry.getGroups()) { groupSet.add(g.getName()); } for (ContactGroup group : new ArrayList<ContactGroup>(getContactGroups())) { if (group.getContactItemByJID(jid) != null && group != unfiledGroup && group != offlineGroup) { if (!groupSet.contains(group.getGroupName())) { removeContactGroup(group); } } } } if (!isUnfiled) { return; } ContactItem unfiledItem = unfiledGroup.getContactItemByJID(jid); if (unfiledItem != null) { } else { ContactItem offlineItem = offlineGroup.getContactItemByJID(jid); if (offlineItem != null) { if ((rosterEntry.getType() == RosterPacket.ItemType.NONE || rosterEntry.getType() == RosterPacket.ItemType.FROM) && RosterPacket.ItemStatus.SUBSCRIPTION_PENDING == rosterEntry.getStatus()) { offlineGroup.removeContactItem(offlineItem); unfiledGroup.addContactItem(offlineItem); unfiledGroup.fireContactGroupUpdated(); unfiledGroup.setVisible(true); } } } } | public void run() { Iterator jids = addresses.iterator(); while (jids.hasNext()) { String jid = (String)jids.next(); removeContactItem(jid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/2241699ff3d2ad8e9d909d7be10dd19a3a3c757c/ContactList.java/buggy/src/java/org/jivesoftware/spark/ui/ContactList.java |
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