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Object[] newArgs = new Object[argsLength]; | Object[] newArgs = new Object[argsLength]; | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.hasNext()) { Constructor constructor = (Constructor) iter.next(); if (constructor.getParameterTypes().length != argsLength) { iter.remove(); } } // remove constructors with wrong parameter types. iter = executeConstructors.iterator(); while (iter.hasNext()) { Constructor constructor = (Constructor) iter.next(); for (int i = 0; i < constructor.getParameterTypes().length; i++) { if (!JavaUtil.isCompatible(args[i], constructor.getParameterTypes()[i])) { iter.remove(); break; } } } if (executeConstructors.isEmpty()) { throw new RubyArgumentException(ruby, "wrong arguments."); } // take the first constructor. Constructor constructor = (Constructor) executeConstructors.getFirst(); Object[] newArgs = new Object[argsLength]; for (int i = 0; i < argsLength; i++) { newArgs[i] = JavaUtil.convertRubyToJava(ruby, args[i], constructor.getParameterTypes()[i]); } try { Object javaValue = constructor.newInstance(newArgs); RubyJavaObject javaObject = new RubyJavaObject(ruby, (RubyModule) recv, javaValue); javaObject.callInit(args); return javaObject; } catch (IllegalAccessException iaExcptn) { } catch (InstantiationException iExcptn) { } catch (IllegalArgumentException iaExcptn) { } catch (InvocationTargetException itExcptn) { } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/JavaConstructor.java/clean/org/jruby/javasupport/JavaConstructor.java |
for (int i = 0; i < argsLength; i++) { newArgs[i] = JavaUtil.convertRubyToJava(ruby, args[i], constructor.getParameterTypes()[i]); } | for (int i = 0; i < argsLength; i++) { newArgs[i] = JavaUtil.convertRubyToJava(ruby, args[i], constructor.getParameterTypes()[i]); } | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.hasNext()) { Constructor constructor = (Constructor) iter.next(); if (constructor.getParameterTypes().length != argsLength) { iter.remove(); } } // remove constructors with wrong parameter types. iter = executeConstructors.iterator(); while (iter.hasNext()) { Constructor constructor = (Constructor) iter.next(); for (int i = 0; i < constructor.getParameterTypes().length; i++) { if (!JavaUtil.isCompatible(args[i], constructor.getParameterTypes()[i])) { iter.remove(); break; } } } if (executeConstructors.isEmpty()) { throw new RubyArgumentException(ruby, "wrong arguments."); } // take the first constructor. Constructor constructor = (Constructor) executeConstructors.getFirst(); Object[] newArgs = new Object[argsLength]; for (int i = 0; i < argsLength; i++) { newArgs[i] = JavaUtil.convertRubyToJava(ruby, args[i], constructor.getParameterTypes()[i]); } try { Object javaValue = constructor.newInstance(newArgs); RubyJavaObject javaObject = new RubyJavaObject(ruby, (RubyModule) recv, javaValue); javaObject.callInit(args); return javaObject; } catch (IllegalAccessException iaExcptn) { } catch (InstantiationException iExcptn) { } catch (IllegalArgumentException iaExcptn) { } catch (InvocationTargetException itExcptn) { } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/JavaConstructor.java/clean/org/jruby/javasupport/JavaConstructor.java |
try { Object javaValue = constructor.newInstance(newArgs); RubyJavaObject javaObject = new RubyJavaObject(ruby, (RubyModule) recv, javaValue); javaObject.callInit(args); return javaObject; } catch (IllegalAccessException iaExcptn) { } catch (InstantiationException iExcptn) { } catch (IllegalArgumentException iaExcptn) { } catch (InvocationTargetException itExcptn) { } return ruby.getNil(); } | try { Object javaValue = constructor.newInstance(newArgs); RubyJavaObject javaObject = new RubyJavaObject(ruby, (RubyModule) recv, javaValue); javaObject.callInit(args); return javaObject; } catch (IllegalAccessException ex) { throw new RaiseException(ruby, "RuntimeError", ex.getMessage()); } catch (InstantiationException ex) { throw new RaiseException(ruby, "RuntimeError", ex.getMessage()); } catch (IllegalArgumentException ex) { throw new RaiseException(ruby, "RuntimeError", ex.getMessage()); } catch (InvocationTargetException ex) { throw new RaiseException(ruby, "RuntimeError", ex.getMessage()); } } | public RubyObject execute(RubyObject recv, RubyObject[] args, Ruby ruby) { LinkedList executeConstructors = new LinkedList(Arrays.asList(constructors)); int argsLength = args != null ? args.length : 0; // remove constructors with wrong parameter count. Iterator iter = executeConstructors.iterator(); while (iter.hasNext()) { Constructor constructor = (Constructor) iter.next(); if (constructor.getParameterTypes().length != argsLength) { iter.remove(); } } // remove constructors with wrong parameter types. iter = executeConstructors.iterator(); while (iter.hasNext()) { Constructor constructor = (Constructor) iter.next(); for (int i = 0; i < constructor.getParameterTypes().length; i++) { if (!JavaUtil.isCompatible(args[i], constructor.getParameterTypes()[i])) { iter.remove(); break; } } } if (executeConstructors.isEmpty()) { throw new RubyArgumentException(ruby, "wrong arguments."); } // take the first constructor. Constructor constructor = (Constructor) executeConstructors.getFirst(); Object[] newArgs = new Object[argsLength]; for (int i = 0; i < argsLength; i++) { newArgs[i] = JavaUtil.convertRubyToJava(ruby, args[i], constructor.getParameterTypes()[i]); } try { Object javaValue = constructor.newInstance(newArgs); RubyJavaObject javaObject = new RubyJavaObject(ruby, (RubyModule) recv, javaValue); javaObject.callInit(args); return javaObject; } catch (IllegalAccessException iaExcptn) { } catch (InstantiationException iExcptn) { } catch (IllegalArgumentException iaExcptn) { } catch (InvocationTargetException itExcptn) { } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/JavaConstructor.java/clean/org/jruby/javasupport/JavaConstructor.java |
{ return requst_.getRealPath("/"); } | { return sc_.getRealPath("/"); } | final public String getDOCUMENT_ROOT() { return requst_.getRealPath("/"); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/4603f6cee8b46d51274d6e6b533212c93f0fb160/CGI_Impersonator.java/clean/webmacro/src/org/webmacro/servlet/CGI_Impersonator.java |
login("root","system","Test"); | loginRoot(); | protected void onSetUp() throws Exception { iQuery = (LocalQuery) applicationContext.getBean("queryService"); iUpdate = (LocalUpdate) applicationContext.getBean("updateService"); iAnalysis = (IAnalysis) applicationContext.getBean("analysisService"); iPojos = (IPojos) applicationContext.getBean("pojosService"); iPixels = (IPixels) applicationContext.getBean("pixelsService"); eContext = (EventContext) applicationContext.getBean("eventContext"); login("root","system","Test"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b0d9b08448464cb80e12bda271a852daf0e5bd6a/AbstractManagedContextTest.java/clean/components/server/test/ome/server/itests/AbstractManagedContextTest.java |
runtime.getLoadService().init(runtime, new ArrayList()); | runtime.getLoadService().init(new ArrayList()); | public void setUp() { runtime = Ruby.getDefaultInstance(); runtime.getLoadService().init(runtime, new ArrayList()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/61503e7396c70acb6ed9f50922ff044d1fcc4bcc/TestRubySymbol.java/buggy/test/org/jruby/test/TestRubySymbol.java |
if(e.getTargetException() instanceof MainExitException) { throw (RuntimeException)e.getTargetException(); } | public IRubyObject internalCall(ThreadContext context, IRubyObject receiver, RubyModule lastClass, String name, IRubyObject[] args, boolean noSuper) { IRuby runtime = context.getRuntime(); arity.checkArity(runtime, args); assert receiver != null; assert args != null; assert method != null; Object[] methodArgs = !arity.isFixed() ? new Object[]{args} : args; try { return (IRubyObject) method.invoke(receiver, methodArgs); } catch (InvocationTargetException e) { if (e.getTargetException() instanceof RaiseException) { throw (RaiseException) e.getTargetException(); } else if (e.getTargetException() instanceof JumpException) { throw (JumpException) e.getTargetException(); } else if (e.getTargetException() instanceof ThreadKill) { // allow it to bubble up throw (ThreadKill) e.getTargetException(); } else if (e.getTargetException() instanceof Exception) { runtime.getJavaSupport().handleNativeException(e.getTargetException()); return runtime.getNil(); } else { throw (Error) e.getTargetException(); } } catch (IllegalAccessException e) { StringBuffer message = new StringBuffer(); message.append(e.getMessage()); message.append(':'); message.append(" methodName=").append(methodName); message.append(" recv=").append(receiver.toString()); message.append(" type=").append(type.getName()); message.append(" methodArgs=["); for (int i = 0; i < methodArgs.length; i++) { message.append(methodArgs[i]); message.append(' '); } message.append(']'); assert false : message.toString(); return null; } catch (final IllegalArgumentException e) {/* StringBuffer message = new StringBuffer(); message.append(e.getMessage()); message.append(':'); message.append(" methodName=").append(methodName); message.append(" recv=").append(recv.toString()); message.append(" type=").append(type.getName()); message.append(" methodArgs=["); for (int i = 0; i < methodArgs.length; i++) { message.append(methodArgs[i]); message.append(' '); } message.append(']');*/ assert false : e; return null; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/4312f891f233f275731e5d8afa842df31058fc8e/ReflectedMethod.java/clean/src/org/jruby/internal/runtime/methods/ReflectedMethod.java |
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RubyIO.print(defout.toRubyObject(), args); | RubyIO.print(defout, args); | public static IRubyObject print(IRubyObject recv, IRubyObject args[]) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); RubyIO.print(defout.toRubyObject(), args); return recv.getRuntime().getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/RubyKernel.java/clean/org/jruby/RubyKernel.java |
RubyIO.printf(defout.toRubyObject(), args); | RubyIO.printf(defout, args); | public static IRubyObject printf(IRubyObject recv, IRubyObject args[]) { if (args.length != 0) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); if (!(args[0] instanceof RubyString)) { defout = args[0]; IRubyObject[] newArgs = new IRubyObject[args.length - 1]; System.arraycopy(args, 1, newArgs, 0, args.length - 1); args = newArgs; } RubyIO.printf(defout.toRubyObject(), args); } return recv.getRuntime().getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/RubyKernel.java/clean/org/jruby/RubyKernel.java |
RubyIO.puts(defout.toRubyObject(), args); | RubyIO.puts(defout, args); | public static IRubyObject puts(IRubyObject recv, IRubyObject args[]) { IRubyObject defout = recv.getRuntime().getGlobalVar("$>"); RubyIO.puts(defout.toRubyObject(), args); return recv.getRuntime().getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f235ab756f32ea9496f8f880066b46ad95ebb692/RubyKernel.java/clean/org/jruby/RubyKernel.java |
head = new BlockNode(head.getPosition()).add(head); | head = new BlockNode(union(head, tail)).add(head); | public Node appendToBlock(Node head, Node tail) { if (tail == null) { return head; } else if (head == null) { return tail; } if (!(head instanceof BlockNode)) { head = new BlockNode(head.getPosition()).add(head); } if (warnings.isVerbose() && new BreakStatementVisitor().isBreakStatement(((ListNode) head).getLast())) { warnings.warning(tail.getPosition(), "Statement not reached."); } if (tail instanceof BlockNode) { ((ListNode) head).addAll((ListNode) tail); } else { ((ListNode) head).add(tail); } return head; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
public Node new_fcall(String name, Node args, ISourcePosition iPosition) { | public Node new_fcall(String name, Node args, Token operation) { | public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCallNode(iPosition, name, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); | ((BlockPassNode) args).setIterNode(new FCallNode(union(operation, args), name, ((BlockPassNode) args).getArgsNode())); | public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCallNode(iPosition, name, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
return new FCallNode(iPosition, name, args); | return new FCallNode(operation.getPosition(), name, args); | public Node new_fcall(String name, Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new FCallNode(args.getPosition(), name, ((BlockPassNode) args).getArgsNode())); return args; } return new FCallNode(iPosition, name, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
public Node new_super(Node args, ISourcePosition iPosition) { | public Node new_super(Node args, Token operation) { | public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); | ((BlockPassNode) args).setIterNode(new SuperNode(union(operation, args), ((BlockPassNode) args).getArgsNode())); | public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
return new SuperNode(iPosition, args); | return new SuperNode(operation.getPosition(), args); | public Node new_super(Node args, ISourcePosition iPosition) { if (args != null && args instanceof BlockPassNode) { ((BlockPassNode) args).setIterNode(new SuperNode(args.getPosition(), ((BlockPassNode) args).getArgsNode())); return args; } return new SuperNode(iPosition, args); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/ParserSupport.java/buggy/src/org/jruby/parser/ParserSupport.java |
String articlePath = getArticlePath(); return ContentUtil.getParentPath(articlePath); | String articlePath = getResourcePath(); if(articlePath!=null){ return ContentUtil.getParentPath(ContentUtil.getParentPath(articlePath)); } else { return null; } | public String getFolderLocation() { String articlePath = getArticlePath(); return ContentUtil.getParentPath(articlePath); } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/1277cefd7fdbf27f5efbdc09726e9176c1de1e1c/ArticleItemBean.java/buggy/src/java/com/idega/block/article/bean/ArticleItemBean.java |
public DatasetLoader(HiViewer viewer, Set datasetsID) | public DatasetLoader(HiViewer viewer, Set datasetsID, boolean refresh) | public DatasetLoader(HiViewer viewer, Set datasetsID) { super(viewer); this.datasetsID = datasetsID; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/DatasetLoader.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/DatasetLoader.java |
this.refresh = refresh; | public DatasetLoader(HiViewer viewer, Set datasetsID) { super(viewer); this.datasetsID = datasetsID; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/DatasetLoader.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/DatasetLoader.java |
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viewer.setHierarchyRoots((Set) result, false); | viewer.setHierarchyRoots((Set) result, false, refresh); | public void handleResult(Object result) { if (viewer.getState() == HiViewer.DISCARDED) return; viewer.setHierarchyRoots((Set) result, false); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fb3743d6f75abbf12f788b3b2925f4a6f4606dd6/DatasetLoader.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/DatasetLoader.java |
public ContactList() { // Load Local Preferences localPreferences = SettingsManager.getLocalPreferences(); offlineGroup = new ContactGroup("Offline Group"); JToolBar toolbar = new JToolBar(); toolbar.setFloatable(false); addContactMenu = new JMenuItem(Res.getString("menuitem.add.contact"), SparkRes.getImageIcon(SparkRes.USER1_ADD_16x16)); addContactGroupMenu = new JMenuItem(Res.getString("menuitem.add.contact.group"), SparkRes.getImageIcon(SparkRes.SMALL_ADD_IMAGE)); removeContactFromGroupMenu = new JMenuItem(Res.getString("menuitem.remove.from.group"), SparkRes.getImageIcon(SparkRes.SMALL_DELETE)); chatMenu = new JMenuItem(Res.getString("menuitem.start.a.chat"), SparkRes.getImageIcon(SparkRes.SMALL_MESSAGE_IMAGE)); renameMenu = new JMenuItem(Res.getString("menuitem.rename"), SparkRes.getImageIcon(SparkRes.DESKTOP_IMAGE)); addContactMenu.addActionListener(this); removeContactFromGroupMenu.addActionListener(this); chatMenu.addActionListener(this); renameMenu.addActionListener(this); setLayout(new BorderLayout()); addingGroupButton = new RolloverButton(SparkRes.getImageIcon(SparkRes.ADD_CONTACT_IMAGE)); RolloverButton groupChatButton = new RolloverButton(SparkRes.getImageIcon(SparkRes.JOIN_GROUPCHAT_IMAGE)); toolbar.add(addingGroupButton); toolbar.add(groupChatButton); addingGroupButton.addActionListener(this); mainPanel.setLayout(new VerticalFlowLayout(VerticalFlowLayout.TOP, 0, 0, true, false)); mainPanel.setBackground((Color)UIManager.get("List.background")); treeScroller = new JScrollPane(mainPanel); treeScroller.setBorder(BorderFactory.createEmptyBorder()); treeScroller.getVerticalScrollBar().setBlockIncrement(50); treeScroller.getVerticalScrollBar().setUnitIncrement(20); retryPanel = new RetryPanel(); workspace = SparkManager.getWorkspace(); workspace.getCardPanel().add(RETRY_PANEL, retryPanel); add(treeScroller, BorderLayout.CENTER); // Load Properties file props = new Properties(); // Save to properties file. propertiesFile = new File(new File(Spark.getUserHome(), "Spark"), "groups.properties"); try { props.load(new FileInputStream(propertiesFile)); } catch (IOException e) { // File does not exist. } // Add ActionListener(s) to menus addContactGroup(unfiledGroup); addContactGroup(offlineGroup); showHideMenu.setSelected(false); // Add KeyMappings getInputMap(JComponent.WHEN_IN_FOCUSED_WINDOW).put(KeyStroke.getKeyStroke("control N"), "searchContacts"); getActionMap().put("searchContacts", new AbstractAction("searchContacts") { public void actionPerformed(ActionEvent evt) { // searchContacts(""); } }); // Save state on shutdown. SparkManager.getMainWindow().addMainWindowListener(new MainWindowListener() { public void shutdown() { saveState(); } public void mainWindowActivated() { } public void mainWindowDeactivated() { } }); SparkManager.getConnection().addConnectionListener(this); // Get command panel and add View Online/Offline, Add Contact StatusBar statusBar = SparkManager.getWorkspace().getStatusBar(); JPanel commandPanel = statusBar.getCommandPanel(); final RolloverButton addContactButton = new RolloverButton(SparkRes.getImageIcon(SparkRes.USER1_ADD_16x16)); commandPanel.add(addContactButton); addContactButton.setToolTipText(Res.getString("message.add.a.contact")); addContactButton.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { new RosterDialog().showRosterDialog(); } }); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/caf8563cc06ab68f1c251d173654deb6b4b1a77c/ContactList.java/buggy/src/java/org/jivesoftware/spark/ui/ContactList.java |
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public void actionPerformed(ActionEvent evt) { // searchContacts(""); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/caf8563cc06ab68f1c251d173654deb6b4b1a77c/ContactList.java/buggy/src/java/org/jivesoftware/spark/ui/ContactList.java |
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moveToOfflineGroup(bareJID); | presence = roster.getPresence(bareJID); if (presence == null) { moveToOfflineGroup(bareJID); } | private void updateUserPresence(Presence presence) { if (presence == null) { return; } Roster roster = SparkManager.getConnection().getRoster(); final String bareJID = StringUtils.parseBareAddress(presence.getFrom()); RosterEntry entry = roster.getEntry(bareJID); boolean isPending = entry != null && (entry.getType() == RosterPacket.ItemType.NONE || entry.getType() == RosterPacket.ItemType.FROM) && RosterPacket.ItemStatus.SUBSCRIPTION_PENDING == entry.getStatus(); // If online, check to see if they are in the offline group. // If so, remove from offline group and add to all groups they // belong to. if (presence.getType() == Presence.Type.available && offlineGroup.getContactItemByJID(bareJID) != null) { changeOfflineToOnline(bareJID, entry, presence); } else if (presence.getFrom().indexOf("workgroup.") != -1) { changeOfflineToOnline(bareJID, entry, presence); } // If online, but not in offline group, update presence. else if (presence.getType() == Presence.Type.available) { final Iterator groupIterator = groupList.iterator(); while (groupIterator.hasNext()) { ContactGroup group = (ContactGroup)groupIterator.next(); ContactItem item = group.getContactItemByJID(bareJID); if (item != null) { item.setPresence(presence); group.fireContactGroupUpdated(); } } } // If not available, move to offline group. else if (presence.getType() == Presence.Type.unavailable && !isPending) { moveToOfflineGroup(bareJID); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/caf8563cc06ab68f1c251d173654deb6b4b1a77c/ContactList.java/buggy/src/java/org/jivesoftware/spark/ui/ContactList.java |
int i, j, k, n = Integer.parseInt(args[0]); | public static void main(String args[]) { //@START int i, j, k, n = Integer.parseInt(args[0]); int x[] = new int[n]; int y[] = new int[n]; for (i = 0; i < n; i++) x[i] = i + 1; for (k = 0; k < 1000; k++ ) for (j = n-1; j >= 0; j--) y[j] += x[j]; System.out.println(y[0] + " " + y[n-1]); //@END } | 53330 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/53330/eb6c850277407b38bcaefb81155941da0f27b849/ary3.java/clean/tests/shootout/java-start/ary3.java |
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this.ctx.applyBeanPropertyValues(this,getName()); | this.ctx.applyBeanPropertyValues(this,getServiceInterface()); | public void selfConfigure() { this.ctx = OmeroContext.getInternalServerContext(); this.ctx.applyBeanPropertyValues(this,getName()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/AbstractLevel1Service.java/clean/components/server/src/ome/logic/AbstractLevel1Service.java |
return new RubyNumeric[]{this, other}; | return new RubyNumeric[]{other, this}; | public RubyNumeric[] coerce(RubyNumeric iNum) { RubyNumeric other = numericValue(iNum); if (!(iNum instanceof RubyInteger)) { return new RubyNumeric[]{this, other}; } return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyBignum.java/buggy/org/jruby/RubyBignum.java |
return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; | return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), other.getDoubleValue()), RubyFloat.newFloat(getRuby(), getDoubleValue())}; | public RubyNumeric[] coerce(RubyNumeric iNum) { RubyNumeric other = numericValue(iNum); if (!(iNum instanceof RubyInteger)) { return new RubyNumeric[]{this, other}; } return new RubyNumeric[] {RubyFloat.newFloat(getRuby(), getDoubleValue()), RubyFloat.newFloat(getRuby(), other.getDoubleValue())}; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/e3f72aab20ef1fc8576d8fa6823d9722ed33c55c/RubyBignum.java/buggy/org/jruby/RubyBignum.java |
result.setFrozen(isFrozen()); | public IRubyObject rbClone() { RubyHash result = newHash(getRuntime(), getValueMap(), getDefaultValue()); result.initCopy(this); return result; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/49aa6e52e2393f8c17a3c126aed59b8fd08b68aa/RubyHash.java/clean/src/org/jruby/RubyHash.java |
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} catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); | /* } catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); */ | public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { ISourcePosition position = threadContext.getPosition(); Block tmpBlock = ArgsUtil.beginCallArgs(runtime); IRubyObject recv = null; try { recv = eval(iVisited.getIterNode()); } finally { threadContext.setPosition(position); ArgsUtil.endCallArgs(runtime, tmpBlock); } result = recv.getInternalClass().call(recv, "each", null, CallType.NORMAL); return; } catch (RetryJump rExcptn) { } } } catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); } catch (BreakJump bExcptn) { result = runtime.getNil(); } finally { runtime.getIterStack().pop(); runtime.getBlockStack().pop(); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/18dd02018c952c97ac0dcbdcf0fd8626a29324f3/EvaluateVisitor.java/buggy/org/jruby/evaluator/EvaluateVisitor.java |
result = runtime.getNil(); | throw new ReturnJump(runtime.getNil()); | public void visitForNode(ForNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { ISourcePosition position = threadContext.getPosition(); Block tmpBlock = ArgsUtil.beginCallArgs(runtime); IRubyObject recv = null; try { recv = eval(iVisited.getIterNode()); } finally { threadContext.setPosition(position); ArgsUtil.endCallArgs(runtime, tmpBlock); } result = recv.getInternalClass().call(recv, "each", null, CallType.NORMAL); return; } catch (RetryJump rExcptn) { } } } catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); } catch (BreakJump bExcptn) { result = runtime.getNil(); } finally { runtime.getIterStack().pop(); runtime.getBlockStack().pop(); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/18dd02018c952c97ac0dcbdcf0fd8626a29324f3/EvaluateVisitor.java/buggy/org/jruby/evaluator/EvaluateVisitor.java |
} catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); | /* } catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); */ | public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVisited.getIterNode()); return; } catch (RetryJump rExcptn) { } } } catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); } catch (BreakJump bExcptn) { result = runtime.getNil(); } finally { threadContext.getIterStack().pop(); threadContext.getBlockStack().pop(); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/18dd02018c952c97ac0dcbdcf0fd8626a29324f3/EvaluateVisitor.java/buggy/org/jruby/evaluator/EvaluateVisitor.java |
result = runtime.getNil(); | throw new ReturnJump(runtime.getNil()); | public void visitIterNode(IterNode iVisited) { threadContext.getBlockStack().push(iVisited.getVarNode(), new EvaluateMethod(iVisited.getBodyNode()), self); threadContext.getIterStack().push(Iter.ITER_PRE); try { while (true) { try { result = eval(iVisited.getIterNode()); return; } catch (RetryJump rExcptn) { } } } catch (ReturnJump rExcptn) { result = rExcptn.getReturnValue(); } catch (BreakJump bExcptn) { result = runtime.getNil(); } finally { threadContext.getIterStack().pop(); threadContext.getBlockStack().pop(); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/18dd02018c952c97ac0dcbdcf0fd8626a29324f3/EvaluateVisitor.java/buggy/org/jruby/evaluator/EvaluateVisitor.java |
XmlBeanDefinitionReader beanDefinitionReader = createBeanDefinitionReader(beanFactory); | XmlBeanDefinitionReader beanDefinitionReader = XBeanHelper.createBeanDefinitionReader(this, beanFactory, xmlPreprocessors); | protected void loadBeanDefinitions(DefaultListableBeanFactory beanFactory) throws IOException { // Create a new XmlBeanDefinitionReader for the given BeanFactory. XmlBeanDefinitionReader beanDefinitionReader = createBeanDefinitionReader(beanFactory); // Configure the bean definition reader with this context's // resource loading environment. beanDefinitionReader.setResourceLoader(this); beanDefinitionReader.setEntityResolver(new ResourceEntityResolver(this)); // Allow a subclass to provide custom initialization of the reader, // then proceed with actually loading the bean definitions. initBeanDefinitionReader(beanDefinitionReader); loadBeanDefinitions(beanDefinitionReader); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/5b129c66ca57cf04635177da2d822bc16f159a7d/XmlWebApplicationContext.java/clean/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/XmlWebApplicationContext.java |
pixelBuffer = new PixelBuffer(1, pixels); | PixelsService service = PixelsService.getInstance(); pixelBuffer = service.getPixelBuffer(pixels); | protected void setUp() { pixels = new Pixels(); pixels.setSizeX(512); pixels.setSizeY(512); pixels.setSizeZ(64); pixels.setSizeC(3); pixels.setSizeT(50); PixelsType type = new PixelsType(); pixels.setPixelsType(type); // FIXME pixelBuffer = new PixelBuffer(1, pixels); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/99dab4d872ad9799aad9dfdb29d0cf3d259a49a2/LargePixelBufferUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/utests/LargePixelBufferUnitTest.java |
public void testGetInitialPlaneOffset() | public void testGetInitialPlaneOffset() throws DimensionsOutOfBoundsException | public void testGetInitialPlaneOffset() { assertEquals(pixelBuffer.getPlaneOffset(0, 0, 0).longValue(), 0L); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/99dab4d872ad9799aad9dfdb29d0cf3d259a49a2/LargePixelBufferUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/utests/LargePixelBufferUnitTest.java |
public void testGetPlaneOffset1() | public void testGetPlaneOffset1() throws DimensionsOutOfBoundsException | public void testGetPlaneOffset1() { long offset = ((long)timepointSize * 25) + ((long)planeSize * 25); assertEquals(pixelBuffer.getPlaneOffset(25, 0, 25).longValue(), offset); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/99dab4d872ad9799aad9dfdb29d0cf3d259a49a2/LargePixelBufferUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/utests/LargePixelBufferUnitTest.java |
public void testGetPlaneOffset2() | public void testGetPlaneOffset2() throws DimensionsOutOfBoundsException | public void testGetPlaneOffset2() { long offset = ((long)timepointSize * 25) + ((long)stackSize * 1) + ((long)planeSize * 25); assertEquals(pixelBuffer.getPlaneOffset(25, 1, 25).longValue(), offset); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/99dab4d872ad9799aad9dfdb29d0cf3d259a49a2/LargePixelBufferUnitTest.java/clean/components/omeio-nio/test/ome/io/nio/utests/LargePixelBufferUnitTest.java |
double[] values = extractValues(attributes,elementName); | double[] values = HeatMapUtils.extractValues(attributes,elementName); | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); double currentVal = Double.POSITIVE_INFINITY; for(int i=0;i<values.length;i++) { if(values[i] < currentVal) { currentVal = values[i]; } } return currentVal; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d45d101f4e831fda33928e252f882d4d16128d2/HeatMapModes.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/heatmap/HeatMapModes.java |
double[] values = extractValues(attributes,elementName); | double[] values = HeatMapUtils.extractValues(attributes,elementName); | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); double currentVal = 0; for(int i=0;i<values.length;i++) { currentVal += values[i]; } return currentVal/(double)values.length; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d45d101f4e831fda33928e252f882d4d16128d2/HeatMapModes.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/heatmap/HeatMapModes.java |
double[] values = extractValues(attributes,elementName); | double[] values = HeatMapUtils.extractValues(attributes,elementName); | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); Arrays.sort(values); if(values.length % 2 != 0) { return values[values.length/2]; } else { double value1 = values[values.length/2-1]; double value2 = values[values.length/2]; return (value1+value2)/2.0; } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d45d101f4e831fda33928e252f882d4d16128d2/HeatMapModes.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/heatmap/HeatMapModes.java |
double[] values = extractValues(attributes,elementName); | double[] values = HeatMapUtils.extractValues(attributes,elementName); | public double computeValue(Attribute[] attributes, String elementName) throws IllegalArgumentException { double[] values = extractValues(attributes,elementName); double currentVal = Double.NEGATIVE_INFINITY; for(int i=0;i<values.length;i++) { if(values[i] > currentVal) { currentVal = values[i]; } } return currentVal; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d45d101f4e831fda33928e252f882d4d16128d2/HeatMapModes.java/clean/SRC/org/openmicroscopy/shoola/agents/browser/heatmap/HeatMapModes.java |
ArticleListBean a = new ArticleListBean(articleItemBean[i].getFolderLocation()+"/"+articleItemBean[i].getHeadline()+".xml", articleItemBean[i].getHeadline(), articleItemBean[i].getItemType(), articleItemBean[i].getAuthor(), articleItemBean[i].getStatus()); | ArticleListBean a = new ArticleListBean(articleItemBean[i].getFolderLocation()+"/"+articleItemBean[i].getHeadline()+ArticleItemBean.ARTICLE_SUFFIX, articleItemBean[i].getHeadline(), articleItemBean[i].getItemType(), articleItemBean[i].getAuthor(), articleItemBean[i].getStatus()); | public void updateDataModel(Integer start, Integer rows) { if (_dataModel == null) { _dataModel = new WFDataModel(); } int availableRows = 0; ArticleItemBean[] articleItemBean; try { articleItemBean = (ArticleItemBean[])loadAllArticlesInFolder(ContentUtil.ARTICLE_PATH).toArray(new ArticleItemBean[0]); availableRows = articleItemBean.length; int nrOfRows = rows.intValue(); if (nrOfRows == 0) { nrOfRows = availableRows; } int maxRow = Math.min(start.intValue() + nrOfRows,availableRows); for (int i = start.intValue(); i < maxRow; i++) { ArticleListBean a = new ArticleListBean(articleItemBean[i].getFolderLocation()+"/"+articleItemBean[i].getHeadline()+".xml", articleItemBean[i].getHeadline(), articleItemBean[i].getItemType(), articleItemBean[i].getAuthor(), articleItemBean[i].getStatus()); _dataModel.set(a, i); } } catch (XmlException e) { // TODO Auto-generated catch block e.printStackTrace(); } catch (IOException e) { // TODO Auto-generated catch block e.printStackTrace(); } _dataModel.setRowCount(availableRows); } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/e75e5a35d9b917c44d8a58d117a43ccf5ad660b4/ArticleListBean.java/buggy/src/java/com/idega/block/article/bean/ArticleListBean.java |
{ String s = e.getActionCommand(); int index = Integer.parseInt(s); try { switch (index) { case FAMILY: JComboBox cbx = (JComboBox) e.getSource(); setFamily(cbx.getSelectedIndex()); break; case WAVELENGTH: JComboBox cbx1 = (JComboBox) e.getSource(); setWavelength(cbx1.getSelectedIndex()); break; case HISTOGRAM: popUpHistogram(); } } catch(NumberFormatException nfe) { throw new Error("Invalid Action ID "+index, nfe); } } | { String s = e.getActionCommand(); int index = Integer.parseInt(s); try { switch (index) { case FAMILY: JComboBox cbx = (JComboBox) e.getSource(); setFamily(cbx.getSelectedIndex()); break; case WAVELENGTH: JComboBox cbx1 = (JComboBox) e.getSource(); setWavelength(cbx1.getSelectedIndex()); break; case HISTOGRAM: popUpHistogram(); break; case NOISE: JCheckBox box = (JCheckBox) e.getSource(); setNoiseReduction(box.isSelected()); } } catch(NumberFormatException nfe) { throw new Error("Invalid Action ID "+index, nfe); } } | public void actionPerformed(ActionEvent e) { String s = e.getActionCommand(); int index = Integer.parseInt(s); try { switch (index) { case FAMILY: JComboBox cbx = (JComboBox) e.getSource(); setFamily(cbx.getSelectedIndex()); break; case WAVELENGTH: JComboBox cbx1 = (JComboBox) e.getSource(); setWavelength(cbx1.getSelectedIndex()); break; case HISTOGRAM: popUpHistogram(); } } catch(NumberFormatException nfe) { throw new Error("Invalid Action ID "+index, nfe); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ if (histogramDialog == null) { int w, start, end, min, max; w = view.getWavelengths().getSelectedIndex(); start = control.getChannelWindowStart(w); end = control.getChannelWindowEnd(w); min = control.getGlobalChannelWindowStart(w); max = control.getGlobalChannelWindowEnd(w); PixelsStatsEntry[] channelStats = control.getChannelStats(w); histogramDialog = new HistogramDialog(control, min, max, start, end, channelStats); } UIUtilities.centerAndShow(histogramDialog); } | { if (histogramDialog == null) { int w, start, end, min, max; w = view.getWavelengths().getSelectedIndex(); start = control.getChannelWindowStart(w); end = control.getChannelWindowEnd(w); min = control.getGlobalChannelWindowStart(w); max = control.getGlobalChannelWindowEnd(w); PixelsStatsEntry[] channelStats = control.getChannelStats(w); histogramDialog = new HistogramDialog(control, min, max, start, end, channelStats); } UIUtilities.centerAndShow(histogramDialog); } | private void popUpHistogram() { if (histogramDialog == null) { int w, start, end, min, max; w = view.getWavelengths().getSelectedIndex(); start = control.getChannelWindowStart(w); end = control.getChannelWindowEnd(w); min = control.getGlobalChannelWindowStart(w); max = control.getGlobalChannelWindowEnd(w); PixelsStatsEntry[] channelStats = control.getChannelStats(w); histogramDialog = new HistogramDialog(control, min, max, start, end, channelStats); } UIUtilities.centerAndShow(histogramDialog); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ JSlider slider = view.getBitResolution(); slider.removeChangeListener(this); slider.setValue(DomainPane.DEPTH_END); slider.addChangeListener(this); } | { JSlider slider = view.getBitResolution(); slider.removeChangeListener(this); slider.setValue(DomainPane.DEPTH_END); slider.addChangeListener(this); } | private void resetDefaultBitResolution() { JSlider slider = view.getBitResolution(); //Remove temporarily the listener otherwise an event is fired. slider.removeChangeListener(this); slider.setValue(DomainPane.DEPTH_END); slider.addChangeListener(this); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ int k = view.getGamma().getValue(); int family = view.getTransformations().getSelectedIndex(); int br = ((Integer) resolutions.get(new Integer(v))).intValue(); control.setQuantumStrategy(k/10, family, br, BR); } | { int br = ((Integer) resolutions.get(new Integer(v))).intValue(); control.setQuantumStrategy(br, box.isSelected()); } | private void setBitResolution(int v) { int k = view.getGamma().getValue(); //gamma int family = view.getTransformations().getSelectedIndex(); //family //bitResolution int br = ((Integer) resolutions.get(new Integer(v))).intValue(); control.setQuantumStrategy(k/10, family, br, BR); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ double k = (double) value/10; view.getGammaLabel().setText(" Gamma: "+k); int family = view.getTransformations().getSelectedIndex(); int b = view.getBitResolution().getValue(); int br = ((Integer) resolutions.get(new Integer(b))).intValue(); control.setQuantumStrategy(k, family, br, GAMMA); } | { double k = (double) value/10; view.getGammaLabel().setText(" Gamma: "+k); int w = view.getWavelengths().getSelectedIndex(); int family = view.getTransformations().getSelectedIndex(); control.setQuantizationMap(w, family, k, GAMMA); } | private void setCurveCoefficient(int value) { double k = (double) value/10; view.getGammaLabel().setText(" Gamma: "+k); int family = view.getTransformations().getSelectedIndex(); //family int b = view.getBitResolution().getValue(); // bitResolution int br = ((Integer) resolutions.get(new Integer(b))).intValue(); control.setQuantumStrategy(k, family, br, GAMMA); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ if (family == QuantumFactory.LOGARITHMIC || family == QuantumFactory.LINEAR) view.getGamma().setEnabled(false); else view.getGamma().setEnabled(true); resetDefaultGamma(); int b = view.getBitResolution().getValue(); int br = ((Integer) resolutions.get(new Integer(b))).intValue(); int k = view.getGamma().getValue(); control.setQuantumStrategy(k/10, family, br, FAMILY); } | { resetDefaultGamma(1, family); int w = view.getWavelengths().getSelectedIndex(); control.setQuantizationMap(w, family, 1, FAMILY); } | private void setFamily(int family) { if (family == QuantumFactory.LOGARITHMIC || family == QuantumFactory.LINEAR) view.getGamma().setEnabled(false); else view.getGamma().setEnabled(true); resetDefaultGamma(); int b = view.getBitResolution().getValue(); // bitResolution int br = ((Integer) resolutions.get(new Integer(b))).intValue(); int k = view.getGamma().getValue(); //gamma control.setQuantumStrategy(k/10, family, br, FAMILY); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ disposeDialogs(); control.setWavelength(w); } | { disposeDialogs(); control.setWavelength(w); } | private void setWavelength(int w) { disposeDialogs(); control.setWavelength(w); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ JSlider source = (JSlider) e.getSource(); if (source == view.getGamma()) setCurveCoefficient(source.getValue()); else setBitResolution(source.getValue()); } | { JSlider source = (JSlider) e.getSource(); if (source == view.getGamma()) setCurveCoefficient(source.getValue()); else setBitResolution(source.getValue()); } | public void stateChanged(ChangeEvent e) { JSlider source = (JSlider) e.getSource(); if (source == view.getGamma()) setCurveCoefficient(source.getValue()); else setBitResolution(source.getValue()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/DomainPaneManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/DomainPaneManager.java |
{ int gv = convertRealIntoGraphics(v); setInputEndBox(gv); view.getHistogramPanel().updateInputEnd(gv, v); } | { int gv = convertRealIntoGraphics(v); setInputEndBox(gv); view.getHistogramPanel().updateInputEnd(gv, v); } | void setInputWindowEnd(int v) { int gv = convertRealIntoGraphics(v); setInputEndBox(gv); view.getHistogramPanel().updateInputEnd(gv, v); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
{ int gv = convertRealIntoGraphics(v); setInputStartBox(gv); view.getHistogramPanel().updateInputStart(gv, v); } | { int gv = convertRealIntoGraphics(v); setInputStartBox(gv); view.getHistogramPanel().updateInputStart(gv, v); } | void setInputWindowStart(int v) { int gv = convertRealIntoGraphics(v); setInputStartBox(gv); view.getHistogramPanel().updateInputStart(gv, v); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/1722ebf9ac60fc8e45cdc8d0049e85db5b86715c/HistogramDialogManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/rnd/pane/HistogramDialogManager.java |
return Character.isLetterOrDigit(ch) || ch == '_'; | return Character.isLetterOrDigit(ch) || ch == '_'; | public static final boolean isIdentChar(char ch) { return Character.isLetterOrDigit(ch) || ch == '_'; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/RubyId.java/buggy/org/jruby/RubyId.java |
return errorInfo.isNil() ? runtime.getNil() : errorInfo.callMethod(errorInfo.getRuntime().getCurrentContext(), "backtrace"); | IRubyObject backtrace = errorInfo.isNil() ? runtime.getNil() : errorInfo.callMethod(errorInfo.getRuntime().getCurrentContext(), "backtrace"); if (!(backtrace instanceof RubyArray)) { backtrace = runtime.getNil(); } return backtrace; | public IRubyObject get() { IRubyObject errorInfo = runtime.getGlobalVariables().get("$!"); return errorInfo.isNil() ? runtime.getNil() : errorInfo.callMethod(errorInfo.getRuntime().getCurrentContext(), "backtrace"); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyGlobal.java/clean/src/org/jruby/RubyGlobal.java |
Logger.logError(e.getMessage(), e); | Log.error(e.getMessage(), e); | private NSImage getImage(String image) { InputStream in = this.getClass().getResourceAsStream(image); ByteArrayOutputStream out = new ByteArrayOutputStream(); byte[] buff = new byte[10 * 1024]; int len; try { while ((len = in.read(buff)) != -1) { out.write(buff, 0, len); } in.close(); out.close(); } catch (IOException e) { Logger.logError(e.getMessage(), e); } NSData data = new NSData(out.toByteArray()); return new NSImage(data); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/497a4624414816d71dc4e2ca2d8ecbea3db08cd4/GrowlMessageListener.java/buggy/src/plugins/growl/src/com/jivesoftware/spark/plugin/growl/GrowlMessageListener.java |
List<CategoryImageLink> images = c.collectFromImageLinks( null ); List<CategoryGroupCategoryLink> cgs = c.collectFromCategoryGroupLinks( null ); | List<CategoryImageLink> images = c.collectImageLinks( null ); List<CategoryGroupCategoryLink> cgs = c.collectCategoryGroupLinks( null ); | public boolean category(Category c) { List<CategoryImageLink> images = c.collectFromImageLinks( null ); List<CategoryGroupCategoryLink> cgs = c.collectFromCategoryGroupLinks( null ); // TODO return false; // TODO images.contains(i); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/ClassificationExclusivityRule.java/buggy/components/server/src/ome/rules/drools/ClassificationExclusivityRule.java |
System.err.println(node.getOffset()); | public void run() { target.addChild(node); awaitingDisplay = false; displayingNode = true; displayedNode = node; target.repaint(); // TODO fix this hack if(displayedNode instanceof SemanticZoomNode) { SemanticZoomNode node = (SemanticZoomNode)displayedNode; node.loadCompositeImages(); System.err.println(node.getOffset()); Point parentPoint = parentComponent.getLocationOnScreen(); Point2D offset = node.getOffset(); int x = (int)Math.round(offset.getX()); int y = (int)Math.round(offset.getY()); node.setAbsoluteLocation(new Point(parentPoint.x+x, parentPoint.y+y)); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/28e98417641b00a2e12a791f10f204dc4562dec1/HoverManager.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/HoverManager.java |
|
WFErrorMessages em = new WFErrorMessages(); em.addErrorMessage(SEARCH_PUBLISHED_FROM_ID); em.addErrorMessage(SEARCH_PUBLISHED_TO_ID); | WFMessages em = new WFMessages(); em.addMessageToDisplay(SEARCH_PUBLISHED_FROM_ID); em.addMessageToDisplay(SEARCH_PUBLISHED_TO_ID); | private UIComponent getSearchPanel() { String ref = SEARCH_ARTICLE_BEAN_ID + "."; WFContainer mainContainer = new WFContainer(); WFErrorMessages em = new WFErrorMessages(); em.addErrorMessage(SEARCH_PUBLISHED_FROM_ID); em.addErrorMessage(SEARCH_PUBLISHED_TO_ID); mainContainer.add(em); HtmlPanelGrid p = WFPanelUtil.getFormPanel(3); //adding myfaces component stuff IWMainApplication iwma = IWMainApplication.getDefaultIWMainApplication(); IWBundle myfacesBundle = iwma.getBundle("org.apache.myfaces"); String jsPath = myfacesBundle.getResourcesVirtualPath()+"/popcalendar.js"; String styleSheet1Path = myfacesBundle.getResourcesVirtualPath()+"/style/WH/theme.css"; String styleSheet2Path = myfacesBundle.getResourcesVirtualPath()+"/style/DB/theme.css"; Stylesheet stylesheet = new Stylesheet(); stylesheet.setPath(styleSheet1Path); stylesheet.setId("css1"); mainContainer.add(stylesheet); Stylesheet stylesheet2 = new Stylesheet(); stylesheet2.setPath(styleSheet2Path); stylesheet2.setId("css2"); mainContainer.add(stylesheet2); Script script = new Script(); script.setScriptSource(jsPath); mainContainer.add(script); //myfaces done p.getChildren().add(WFUtil.getText("Article text:")); p.getChildren().add(WFUtil.getText("Author:")); p.getChildren().add(WFUtil.getText("Category")); HtmlInputText searchTextInput = WFUtil.getInputText(SEARCH_TEXT_ID, ref + "searchText"); searchTextInput.setSize(40); p.getChildren().add(searchTextInput); HtmlInputText searchAuthorInput = WFUtil.getInputText(SEARCH_AUTHOR_ID, ref + "searchAuthor"); searchAuthorInput.setSize(30); p.getChildren().add(searchAuthorInput); HtmlSelectOneMenu searchCategoryMenu = WFUtil.getSelectOneMenu(SEARCH_CATEGORY_ID, ref + "categories", ref + "searchCategory"); p.getChildren().add(searchCategoryMenu); p.getChildren().add(WFUtil.getText("Published from:")); p.getChildren().add(WFUtil.getText("Published to:")); p.getChildren().add(WFUtil.getText(" ")); // HtmlInputText searchPublishedFromInput = WFUtil.getInputText(SEARCH_PUBLISHED_FROM_ID, ref + "searchPublishedFrom"); // searchPublishedFromInput.setSize(20);// searchPublishedFromInput.setConverter(new WFDateConverter());// HtmlInputCalendar searchPublishedFromInput = new HtmlInputCalendar(); searchPublishedFromInput.setId("fromDate"); searchPublishedFromInput.setRenderAsPopup(true); WFUtil.setValueBinding(searchPublishedFromInput,"value",ref + "searchPublishedFrom"); p.getChildren().add(searchPublishedFromInput); // HtmlInputText searchPublishedToInput = WFUtil.getInputText(SEARCH_PUBLISHED_TO_ID, ref + "searchPublishedTo"); // searchPublishedToInput.setSize(20);// searchPublishedToInput.setConverter(new WFDateConverter()); HtmlInputCalendar searchPublishedToInput = new HtmlInputCalendar(); searchPublishedToInput.setId("toDate"); searchPublishedToInput.setRenderAsPopup(true); WFUtil.setValueBinding(searchPublishedToInput,"value",ref + "searchPublishedTo"); p.getChildren().add(searchPublishedToInput); p.getChildren().add(WFUtil.getText(" ")); mainContainer.add(p); p = WFPanelUtil.getPlainFormPanel(1); p.getChildren().add(WFUtil.getText(" ")); p.getChildren().add(WFUtil.getButton(SEARCH_BUTTON_ID, "Search", this)); mainContainer.add(p); return mainContainer; } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/5db26355cf68616cbd8859fa37cd6aa73d783808/SearchArticleBlock.java/buggy/src/java/com/idega/block/article/component/SearchArticleBlock.java |
ExperimenterGroup g = iQuery.execute(new GroupQ(new Parameters() .addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: " + groupId); } int count = g.sizeOfGroupExperimenterMap(); if (count < 1) { return new Experimenter[] {}; } return (Experimenter[]) g.linkedExperimenterList().toArray( new Experimenter[count]); | List<Experimenter> experimenters = iQuery.findAllByQuery("select e from Experimenter as e left outer " + "join e.groupExperimenterMap as map left outer join " + "map.parent as g where g.id = :id", new Parameters().addId(groupId)); return (Experimenter[]) experimenters.toArray( new Experimenter[experimenters.size()]); | public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute(new GroupQ(new Parameters() .addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: " + groupId); } int count = g.sizeOfGroupExperimenterMap(); if (count < 1) { return new Experimenter[] {}; } return (Experimenter[]) g.linkedExperimenterList().toArray( new Experimenter[count]); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0821eaa1ce9ad6663bc414dcdedec42f400fa93a/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
Experimenter e = iQuery.execute(new UserQ(new Parameters() .addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: " + experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if (count < 1) { return new ExperimenterGroup[] {}; } return (ExperimenterGroup[]) e.linkedExperimenterGroupList().toArray( new ExperimenterGroup[count]); | List<ExperimenterGroup> groups = iQuery.findAllByQuery("select g from ExperimenterGroup as g left " + "outer join g.groupExperimenterMap as map left outer " + "join map.child as e where e.id = :id", new Parameters().addId(experimenterId)); return (ExperimenterGroup[]) groups.toArray( new ExperimenterGroup[groups.size()]); | public ExperimenterGroup[] containedGroups(Long experimenterId) { Experimenter e = iQuery.execute(new UserQ(new Parameters() .addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: " + experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if (count < 1) { return new ExperimenterGroup[] {}; } return (ExperimenterGroup[]) e.linkedExperimenterGroupList().toArray( new ExperimenterGroup[count]); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0821eaa1ce9ad6663bc414dcdedec42f400fa93a/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
clazz = new Clazz("HelloWorld"); | clazz = new Clazz("HelloWorld", new CoverageData()); | public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverageRate(), 0); assertEquals(1.0, clazz.getLineCoverageRate(), 0); assertFalse(clazz.isValidSourceLine(19)); clazz = new Clazz("com.example.HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("com.example", clazz.getPackageName()); assertEquals("com/example/HelloWorld.java", clazz.getLongFileName()); assertEquals("com.example.HelloWorld", clazz.getLongName()); try { new Clazz(null); fail("Expected an IllegalArgumentException but did not receive one!"); } catch (IllegalArgumentException e) { //Good } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/ClazzTest.java/buggy/cobertura/test/net/sourceforge/cobertura/reporting/ClazzTest.java |
clazz = new Clazz("com.example.HelloWorld"); | clazz = new Clazz("com.example.HelloWorld", new CoverageData()); | public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverageRate(), 0); assertEquals(1.0, clazz.getLineCoverageRate(), 0); assertFalse(clazz.isValidSourceLine(19)); clazz = new Clazz("com.example.HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("com.example", clazz.getPackageName()); assertEquals("com/example/HelloWorld.java", clazz.getLongFileName()); assertEquals("com.example.HelloWorld", clazz.getLongName()); try { new Clazz(null); fail("Expected an IllegalArgumentException but did not receive one!"); } catch (IllegalArgumentException e) { //Good } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/ClazzTest.java/buggy/cobertura/test/net/sourceforge/cobertura/reporting/ClazzTest.java |
new Clazz(null); | new Clazz(null, new CoverageData()); | public static void testClazz() { Clazz clazz; clazz = new Clazz("HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("", clazz.getPackageName()); assertEquals("HelloWorld.java", clazz.getLongFileName()); assertEquals("HelloWorld", clazz.getLongName()); assertEquals(0, clazz.getBranchCoverageRate(), 0); assertEquals(1.0, clazz.getLineCoverageRate(), 0); assertFalse(clazz.isValidSourceLine(19)); clazz = new Clazz("com.example.HelloWorld"); assertEquals("HelloWorld", clazz.getName()); assertEquals("com.example", clazz.getPackageName()); assertEquals("com/example/HelloWorld.java", clazz.getLongFileName()); assertEquals("com.example.HelloWorld", clazz.getLongName()); try { new Clazz(null); fail("Expected an IllegalArgumentException but did not receive one!"); } catch (IllegalArgumentException e) { //Good } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/100512ee483a0d8eebc3eb78a5d8913b7b64ddb6/ClazzTest.java/buggy/cobertura/test/net/sourceforge/cobertura/reporting/ClazzTest.java |
Object value = getValue(getElementText(childElement), null); | Element valueElement = getFirstChildElement(childElement); Object value; if (valueElement != null) { value = parsePropertySubElement(valueElement, ""); } else { value = getElementText(childElement); } | protected Object parseCustomMapElement(MappingMetaData metadata, Element element, String name) { Map map = new HashMap(); Element parent = (Element) element.getParentNode(); String entryName = metadata.getMapEntryName(getLocalName(parent), name); String keyName = metadata.getMapKeyName(getLocalName(parent), name); if (entryName == null) entryName = "property"; if (keyName == null) keyName = "key"; // TODO : support further customizations //String valueName = "value"; //boolean keyIsAttr = true; //boolean valueIsAttr = false; NodeList nl = element.getChildNodes(); for (int i = 0; i < nl.getLength(); i++) { Node node = nl.item(i); if (node instanceof Element) { Element childElement = (Element) node; String localName = childElement.getLocalName(); String uri = childElement.getNamespaceURI(); if (localName == null || localName.equals("xmlns") || localName.startsWith("xmlns:")) { continue; } // we could use namespaced attributes to differentiate real spring // attributes from namespace-specific attributes if (!isEmpty(uri) && localName.equals(entryName)) { String key = childElement.getAttribute(keyName); if (key == null) throw new RuntimeException("No key defined for map " + entryName); Object keyValue = getValue(key, null); Object value = getValue(getElementText(childElement), null); map.put(keyValue, value); } } } return map; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/4a3dda22527dffb579d2266a490a4bf02b280c4f/XBeanXmlBeanDefinitionParser.java/clean/xbean-spring-v1/src/main/java/org/apache/xbean/spring/context/v1/XBeanXmlBeanDefinitionParser.java |
public BaseQ(Parameters params) { super(defs,new Parameters( new Filter().unique() ).addAll( params )); } | public BaseQ(Parameters params) { super(defs, new Parameters(new Filter().unique()).addAll(params)); } | public BaseQ(Parameters params) { super(defs,new Parameters( new Filter().unique() ).addAll( params )); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public GroupQ(Parameters params) { super(params); } | public GroupQ(Parameters params) { super(params); } | public GroupQ(Parameters params) { super(params); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (value("name") != null) { c.add( Restrictions.eq("name", value("name"))); } else if (value("id") != null) { c.add( Restrictions.eq("id", value("id"))); } | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap", Query.LEFT_JOIN); Criteria e = m.createCriteria("child", Query.LEFT_JOIN); | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (value("name") != null) { c.add( Restrictions.eq("name", value("name"))); } else if (value("id") != null) { c.add( Restrictions.eq("id", value("id"))); } else { throw new InternalException( "Name and id are both null for group query."); } setCriteria( c ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
else { throw new InternalException( "Name and id are both null for group query."); } setCriteria( c ); } | if (value("name") != null) { c.add(Restrictions.eq("name", value("name"))); } else if (value("id") != null) { c.add(Restrictions.eq("id", value("id"))); } else { throw new InternalException( "Name and id are both null for group query."); } setCriteria(c); } | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(ExperimenterGroup.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria e = m.createCriteria("child",Query.LEFT_JOIN); if (value("name") != null) { c.add( Restrictions.eq("name", value("name"))); } else if (value("id") != null) { c.add( Restrictions.eq("id", value("id"))); } else { throw new InternalException( "Name and id are both null for group query."); } setCriteria( c ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public UserQ(Parameters params) { super(params); } | public UserQ(Parameters params) { super(params); } | public UserQ(Parameters params) { super(params); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(Experimenter.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria g = m.createCriteria("parent",Query.LEFT_JOIN); if (value("name") != null) { c.add( Restrictions.eq("omeName", value("name"))); } else if (value("id") != null) { c.add( Restrictions.eq("id", value("id"))); } else { throw new InternalException( "Name and id are both null for user query."); } setCriteria( c ); } | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(Experimenter.class); Criteria m = c.createCriteria("groupExperimenterMap", Query.LEFT_JOIN); Criteria g = m.createCriteria("parent", Query.LEFT_JOIN); if (value("name") != null) { c.add(Restrictions.eq("omeName", value("name"))); } else if (value("id") != null) { c.add(Restrictions.eq("id", value("id"))); } else { throw new InternalException( "Name and id are both null for user query."); } setCriteria(c); } | protected void buildQuery(Session session) throws HibernateException, SQLException { Criteria c = session.createCriteria(Experimenter.class); Criteria m = c.createCriteria("groupExperimenterMap",Query.LEFT_JOIN); Criteria g = m.createCriteria("parent",Query.LEFT_JOIN); if (value("name") != null) { c.add( Restrictions.eq("omeName", value("name"))); } else if (value("id") != null) { c.add( Restrictions.eq("id", value("id"))); } else { throw new InternalException( "Name and id are both null for user query."); } setCriteria( c ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = groupProxy(group.getId()); GroupExperimenterMap map = new GroupExperimenterMap(); map.link(foundGroup,foundUser); map.setDetails( getSecuritySystem().transientDetails(map)); getSecuritySystem().doAction(map,new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }); | public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = groupProxy(group.getId()); GroupExperimenterMap map = new GroupExperimenterMap(); map.link(foundGroup, foundUser); map.setDetails(getSecuritySystem().transientDetails(map)); getSecuritySystem().doAction(map, new SecureAction() { public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject(obj); } }); | public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = groupProxy(group.getId()); GroupExperimenterMap map = new GroupExperimenterMap(); map.link(foundGroup,foundUser); map.setDetails( getSecuritySystem().transientDetails(map)); getSecuritySystem().doAction(map,new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }); } iUpdate.flush(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
iUpdate.flush(); } | iUpdate.flush(); } | public void addGroups(Experimenter user, ExperimenterGroup... groups) { if (user == null) return; // Handled by annotations if (groups == null) return; Experimenter foundUser = userProxy(user.getId()); for (ExperimenterGroup group : groups) { ExperimenterGroup foundGroup = groupProxy(group.getId()); GroupExperimenterMap map = new GroupExperimenterMap(); map.link(foundGroup,foundUser); map.setDetails( getSecuritySystem().transientDetails(map)); getSecuritySystem().doAction(map,new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }); } iUpdate.flush(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
return iUpdate.saveAndReturnObject( obj ); } | return iUpdate.saveAndReturnObject(obj); } | public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void changeGroup(IObject iObject, String groupName) { final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); ExperimenterGroup group = groupProxy(groupName); copy.getDetails().setGroup(group); getSecuritySystem().doAction(copy, new SecureAction(){ public IObject updateObject(IObject obj) { update.flush(); return null; } }); } | public void changeGroup(IObject iObject, String groupName) { final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); ExperimenterGroup group = groupProxy(groupName); copy.getDetails().setGroup(group); getSecuritySystem().doAction(copy, new SecureAction() { public IObject updateObject(IObject obj) { update.flush(); return null; } }); } | public void changeGroup(IObject iObject, String groupName) { final LocalUpdate update = iUpdate; // should take a group final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); ExperimenterGroup group = groupProxy(groupName); copy.getDetails().setGroup(group); getSecuritySystem().doAction(copy, new SecureAction(){ public IObject updateObject(IObject obj) { update.flush(); return null; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public IObject updateObject(IObject obj) { update.flush(); return null; } | public IObject updateObject(IObject obj) { update.flush(); return null; } | public IObject updateObject(IObject obj) { update.flush(); return null; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void changeOwner(IObject iObject, String omeName) { IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Experimenter owner = userProxy(omeName); copy.getDetails().setOwner(owner); iUpdate.saveObject(copy); } | public void changeOwner(IObject iObject, String omeName) { IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Experimenter owner = userProxy(omeName); copy.getDetails().setOwner(owner); iUpdate.saveObject(copy); } | public void changeOwner(IObject iObject, String omeName) { // should take an Owner IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); Experimenter owner = userProxy(omeName); copy.getDetails().setOwner(owner); iUpdate.saveObject(copy); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void changePassword(String newPassword) { internalChangeUserPasswordById( getSecuritySystem().currentUserId(), newPassword); } | public void changePassword(String newPassword) { internalChangeUserPasswordById(getSecuritySystem().currentUserId(), newPassword); } | public void changePassword(String newPassword) { internalChangeUserPasswordById( getSecuritySystem().currentUserId(), newPassword); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void changePermissions(final IObject iObject, final Permissions perms) { final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); copy.getDetails().setPermissions(perms); getSecuritySystem().doAction(copy, new SecureAction(){ public <T extends IObject> T updateObject(T obj) { update.flush(); return null; } }); } | public void changePermissions(final IObject iObject, final Permissions perms) { final LocalUpdate update = iUpdate; final EventContext ec = getSecuritySystem().getEventContext(); final boolean isAdmin = ec.isCurrentUserAdmin(); getSecuritySystem().runAsAdmin(new AdminAction(){ public void runAsAdmin() { IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); if (isAdmin || ec.getCurrentUserId().equals( copy.getDetails().getOwner().getId())) { copy.getDetails().setPermissions(perms); update.flush(); } else { throw new SecurityViolation("Cannot change permissions for:"+ copy); } } }); } | public void changePermissions(final IObject iObject, final Permissions perms) { final LocalUpdate update = iUpdate; final IObject copy = iQuery.get(iObject.getClass(), iObject.getId()); copy.getDetails().setPermissions(perms); getSecuritySystem().doAction(copy, new SecureAction(){ public <T extends IObject> T updateObject(T obj) { update.flush(); return null; } }); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void changeUserPassword(String omeName, String newPassword) { Experimenter e = lookupExperimenter(omeName); internalChangeUserPasswordById(e.getId(),newPassword); } | public void changeUserPassword(String omeName, String newPassword) { Experimenter e = lookupExperimenter(omeName); internalChangeUserPasswordById(e.getId(), newPassword); } | public void changeUserPassword(String omeName, String newPassword) { Experimenter e = lookupExperimenter(omeName); internalChangeUserPasswordById(e.getId(),newPassword); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: "+groupId); } int count = g.sizeOfGroupExperimenterMap(); if ( count < 1 ) { return new Experimenter[]{}; } return (Experimenter[]) g.linkedExperimenterList() .toArray(new Experimenter[count]); } | public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute(new GroupQ(new Parameters() .addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: " + groupId); } int count = g.sizeOfGroupExperimenterMap(); if (count < 1) { return new Experimenter[] {}; } return (Experimenter[]) g.linkedExperimenterList().toArray( new Experimenter[count]); } | public Experimenter[] containedExperimenters(Long groupId) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(groupId))); if (g == null) { throw new ApiUsageException("No such group: "+groupId); } int count = g.sizeOfGroupExperimenterMap(); if ( count < 1 ) { return new Experimenter[]{}; } return (Experimenter[]) g.linkedExperimenterList() .toArray(new Experimenter[count]); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public ExperimenterGroup[] containedGroups(Long experimenterId) { Experimenter e = iQuery.execute( new UserQ( new Parameters( ).addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: "+experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if ( count < 1 ) { return new ExperimenterGroup[]{}; } return (ExperimenterGroup[]) e.linkedExperimenterGroupList() .toArray(new ExperimenterGroup[count]); } | public ExperimenterGroup[] containedGroups(Long experimenterId) { Experimenter e = iQuery.execute(new UserQ(new Parameters() .addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: " + experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if (count < 1) { return new ExperimenterGroup[] {}; } return (ExperimenterGroup[]) e.linkedExperimenterGroupList().toArray( new ExperimenterGroup[count]); } | public ExperimenterGroup[] containedGroups(Long experimenterId) { Experimenter e = iQuery.execute( new UserQ( new Parameters( ).addId(experimenterId))); if (e == null) { throw new ApiUsageException("No such user: "+experimenterId); } int count = e.sizeOfGroupExperimenterMap(); if ( count < 1 ) { return new ExperimenterGroup[]{}; } return (ExperimenterGroup[]) e.linkedExperimenterGroupList() .toArray(new ExperimenterGroup[count]); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
protected ExperimenterGroup copyGroup(ExperimenterGroup g) { if ( g.getName() == null ) { throw new ValidationException("Group name may not be null."); } ExperimenterGroup copy = new ExperimenterGroup(); copy.setDescription( g.getDescription() ); copy.setName( g.getName() ); copy.setDetails( getSecuritySystem().transientDetails(g)); return copy; } | protected ExperimenterGroup copyGroup(ExperimenterGroup g) { if (g.getName() == null) { throw new ValidationException("Group name may not be null."); } ExperimenterGroup copy = new ExperimenterGroup(); copy.setDescription(g.getDescription()); copy.setName(g.getName()); copy.setDetails(getSecuritySystem().transientDetails(g)); return copy; } | protected ExperimenterGroup copyGroup(ExperimenterGroup g) { if ( g.getName() == null ) { throw new ValidationException("Group name may not be null."); } ExperimenterGroup copy = new ExperimenterGroup(); copy.setDescription( g.getDescription() ); copy.setName( g.getName() ); copy.setDetails( getSecuritySystem().transientDetails(g)); // TODO see shallow copy comment on copy user return copy; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
protected Experimenter copyUser(Experimenter e) { if ( e.getOmeName() == null ) { throw new ValidationException("OmeName may not be null."); } Experimenter copy = new Experimenter(); copy.setOmeName( e.getOmeName() ); copy.setFirstName( e.getOmeName() ); copy.setLastName( e.getLastName() ); copy.setEmail( e.getEmail() ); if (e.getDetails()!=null && e.getDetails().getPermissions()!=null) { copy.getDetails().setPermissions(e.getDetails().getPermissions()); } return copy; } | protected Experimenter copyUser(Experimenter e) { if (e.getOmeName() == null) { throw new ValidationException("OmeName may not be null."); } Experimenter copy = new Experimenter(); copy.setOmeName(e.getOmeName()); copy.setFirstName(e.getOmeName()); copy.setLastName(e.getLastName()); copy.setEmail(e.getEmail()); if (e.getDetails() != null && e.getDetails().getPermissions() != null) { copy.getDetails().setPermissions(e.getDetails().getPermissions()); } return copy; } | protected Experimenter copyUser(Experimenter e) { if ( e.getOmeName() == null ) { throw new ValidationException("OmeName may not be null."); } Experimenter copy = new Experimenter(); copy.setOmeName( e.getOmeName() ); copy.setFirstName( e.getOmeName() ); copy.setLastName( e.getLastName() ); copy.setEmail( e.getEmail() ); if (e.getDetails()!=null && e.getDetails().getPermissions()!=null) { copy.getDetails().setPermissions(e.getDetails().getPermissions()); } // TODO make ShallowCopy-like which ignores collections and details. // if possible, values should be validated. i.e. iTypes should say what // is non-null return copy; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public long createExperimenter( Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) { Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { throw new ApiUsageException("Default group may not be null."); } | public long createExperimenter(Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) { | public long createExperimenter( Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) {// TODO check that no other group is default Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { throw new ApiUsageException("Default group may not be null."); } SecureAction action = new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }; e = getSecuritySystem().doAction(e, action); final GroupExperimenterMap defaultGroupMap = new GroupExperimenterMap(); defaultGroupMap.link( groupProxy(defaultGroup.getId()), userProxy(e.getId())); defaultGroupMap.setDefaultGroupLink(Boolean.TRUE); defaultGroupMap.setDetails( getSecuritySystem().transientDetails( defaultGroupMap )); getSecuritySystem().doAction(defaultGroupMap,action); if ( null != otherGroups ) { for (ExperimenterGroup group : otherGroups) { if ( group == null ) continue; if ( group.getId() == null) { throw new ApiUsageException( "Groups must be previously saved during " + "Experimenter creation."); } GroupExperimenterMap groupMap = new GroupExperimenterMap(); groupMap.link( groupProxy(group.getId()), userProxy(e.getId())); groupMap.setDefaultGroupLink(Boolean.FALSE); groupMap.setDetails( getSecuritySystem().transientDetails( groupMap )); getSecuritySystem().doAction(groupMap, action); } } changeUserPassword(e.getOmeName()," "); return e.getId(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
SecureAction action = new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }; e = getSecuritySystem().doAction(e, action); final GroupExperimenterMap defaultGroupMap = new GroupExperimenterMap(); defaultGroupMap.link( groupProxy(defaultGroup.getId()), userProxy(e.getId())); | Experimenter e = copyUser(experimenter); if (defaultGroup == null || defaultGroup.getId() == null) { throw new ApiUsageException("Default group may not be null."); } SecureAction action = new SecureAction() { public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject(obj); } }; e = getSecuritySystem().doAction(e, action); final GroupExperimenterMap defaultGroupMap = new GroupExperimenterMap(); defaultGroupMap.link(groupProxy(defaultGroup.getId()), userProxy(e .getId())); | public long createExperimenter( Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) {// TODO check that no other group is default Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { throw new ApiUsageException("Default group may not be null."); } SecureAction action = new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }; e = getSecuritySystem().doAction(e, action); final GroupExperimenterMap defaultGroupMap = new GroupExperimenterMap(); defaultGroupMap.link( groupProxy(defaultGroup.getId()), userProxy(e.getId())); defaultGroupMap.setDefaultGroupLink(Boolean.TRUE); defaultGroupMap.setDetails( getSecuritySystem().transientDetails( defaultGroupMap )); getSecuritySystem().doAction(defaultGroupMap,action); if ( null != otherGroups ) { for (ExperimenterGroup group : otherGroups) { if ( group == null ) continue; if ( group.getId() == null) { throw new ApiUsageException( "Groups must be previously saved during " + "Experimenter creation."); } GroupExperimenterMap groupMap = new GroupExperimenterMap(); groupMap.link( groupProxy(group.getId()), userProxy(e.getId())); groupMap.setDefaultGroupLink(Boolean.FALSE); groupMap.setDetails( getSecuritySystem().transientDetails( groupMap )); getSecuritySystem().doAction(groupMap, action); } } changeUserPassword(e.getOmeName()," "); return e.getId(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
defaultGroupMap.setDetails( getSecuritySystem().transientDetails( defaultGroupMap )); getSecuritySystem().doAction(defaultGroupMap,action); if ( null != otherGroups ) { for (ExperimenterGroup group : otherGroups) { if ( group == null ) continue; if ( group.getId() == null) { throw new ApiUsageException( "Groups must be previously saved during " + "Experimenter creation."); } GroupExperimenterMap groupMap = new GroupExperimenterMap(); groupMap.link( groupProxy(group.getId()), userProxy(e.getId())); groupMap.setDefaultGroupLink(Boolean.FALSE); groupMap.setDetails( getSecuritySystem().transientDetails( groupMap )); getSecuritySystem().doAction(groupMap, action); } } changeUserPassword(e.getOmeName()," "); return e.getId(); } | defaultGroupMap.setDetails(getSecuritySystem().transientDetails( defaultGroupMap)); getSecuritySystem().doAction(defaultGroupMap, action); if (null != otherGroups) { for (ExperimenterGroup group : otherGroups) { if (group == null) continue; if (group.getId() == null) { throw new ApiUsageException( "Groups must be previously saved during " + "Experimenter creation."); } GroupExperimenterMap groupMap = new GroupExperimenterMap(); groupMap.link(groupProxy(group.getId()), userProxy(e.getId())); groupMap.setDefaultGroupLink(Boolean.FALSE); groupMap.setDetails(getSecuritySystem().transientDetails( groupMap)); getSecuritySystem().doAction(groupMap, action); } } changeUserPassword(e.getOmeName(), " "); return e.getId(); } | public long createExperimenter( Experimenter experimenter, ExperimenterGroup defaultGroup, ExperimenterGroup[] otherGroups) {// TODO check that no other group is default Experimenter e = copyUser( experimenter ); if ( defaultGroup == null || defaultGroup.getId() == null ) { throw new ApiUsageException("Default group may not be null."); } SecureAction action = new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }; e = getSecuritySystem().doAction(e, action); final GroupExperimenterMap defaultGroupMap = new GroupExperimenterMap(); defaultGroupMap.link( groupProxy(defaultGroup.getId()), userProxy(e.getId())); defaultGroupMap.setDefaultGroupLink(Boolean.TRUE); defaultGroupMap.setDetails( getSecuritySystem().transientDetails( defaultGroupMap )); getSecuritySystem().doAction(defaultGroupMap,action); if ( null != otherGroups ) { for (ExperimenterGroup group : otherGroups) { if ( group == null ) continue; if ( group.getId() == null) { throw new ApiUsageException( "Groups must be previously saved during " + "Experimenter creation."); } GroupExperimenterMap groupMap = new GroupExperimenterMap(); groupMap.link( groupProxy(group.getId()), userProxy(e.getId())); groupMap.setDefaultGroupLink(Boolean.FALSE); groupMap.setDetails( getSecuritySystem().transientDetails( groupMap )); getSecuritySystem().doAction(groupMap, action); } } changeUserPassword(e.getOmeName()," "); return e.getId(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
return iUpdate.saveAndReturnObject( obj ); } | return iUpdate.saveAndReturnObject(obj); } | public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public long createGroup(ExperimenterGroup group) { group = copyGroup( group ); ExperimenterGroup g = getSecuritySystem().doAction(group, new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }); return g.getId(); } | public long createGroup(ExperimenterGroup group) { group = copyGroup(group); ExperimenterGroup g = getSecuritySystem().doAction(group, new SecureAction() { public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject(obj); } }); return g.getId(); } | public long createGroup(ExperimenterGroup group) { group = copyGroup( group ); ExperimenterGroup g = getSecuritySystem().doAction(group, new SecureAction(){ public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } }); return g.getId(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
return iUpdate.saveAndReturnObject( obj ); } | return iUpdate.saveAndReturnObject(obj); } | public <T extends IObject> T updateObject(T obj) { return iUpdate.saveAndReturnObject( obj ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public long createSystemUser(Experimenter newSystemUser) { return createExperimenter( newSystemUser, groupProxy("system"), new ExperimenterGroup[]{ groupProxy("user") } ); } | public long createSystemUser(Experimenter newSystemUser) { return createExperimenter(newSystemUser, groupProxy("system"), new ExperimenterGroup[] { groupProxy("user") }); } | public long createSystemUser(Experimenter newSystemUser) { return createExperimenter( newSystemUser, groupProxy("system"), new ExperimenterGroup[]{ groupProxy("user") } ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public long createUser(Experimenter newUser) { return createExperimenter( newUser, groupProxy("user"),null); } | public long createUser(Experimenter newUser) { return createExperimenter(newUser, groupProxy("user"), null); } | public long createUser(Experimenter newUser) { return createExperimenter( newUser, groupProxy("user"),null); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public void deleteExperimenter( Experimenter user ) { Experimenter e = userProxy(user.getId()); int count = jdbc.update("delete from password where experimenter_id = ?", e.getId()); if ( count == 0 ) { getLogger().info("No password found for user " +e.getOmeName() +". Cannot delete."); } iUpdate.deleteObject(e); } | public void deleteExperimenter(Experimenter user) { Experimenter e = userProxy(user.getId()); int count = jdbc.update( "delete from password where experimenter_id = ?", e.getId()); if (count == 0) { getLogger().info( "No password found for user " + e.getOmeName() + ". Cannot delete."); } iUpdate.deleteObject(e); } | public void deleteExperimenter( Experimenter user ) { Experimenter e = userProxy(user.getId()); int count = jdbc.update("delete from password where experimenter_id = ?", e.getId()); if ( count == 0 ) { getLogger().info("No password found for user " +e.getOmeName() +". Cannot delete."); } iUpdate.deleteObject(e); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public ExperimenterGroup getDefaultGroup( @NotNull Long experimenterId ) { ExperimenterGroup g = iQuery.findByQuery( "select g from ExperimenterGroup g " + "join fetch g.groupExperimenterMap m " + "join fetch m.child e " + "where e.id = :id " + "and m.defaultGroupLink = true", new Parameters().addId(experimenterId)); if (g==null) { throw new ValidationException( "The user "+experimenterId+" has no default group set."); } return g; } | public ExperimenterGroup getDefaultGroup(@NotNull Long experimenterId) { ExperimenterGroup g = iQuery.findByQuery( "select g from ExperimenterGroup g " + "join fetch g.groupExperimenterMap m " + "join fetch m.child e " + "where e.id = :id " + "and m.defaultGroupLink = true", new Parameters() .addId(experimenterId)); if (g == null) { throw new ValidationException("The user " + experimenterId + " has no default group set."); } return g; } | public ExperimenterGroup getDefaultGroup( @NotNull Long experimenterId ) { ExperimenterGroup g = iQuery.findByQuery( "select g from ExperimenterGroup g " + "join fetch g.groupExperimenterMap m " + "join fetch m.child e " + "where e.id = :id " + "and m.defaultGroupLink = true", new Parameters().addId(experimenterId)); if (g==null) { throw new ValidationException( "The user "+experimenterId+" has no default group set."); } return g; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public EventContext getEventContext() { return new SimpleEventContext( getSecuritySystem().getEventContext() ); } | public EventContext getEventContext() { return new SimpleEventContext(getSecuritySystem().getEventContext()); } | public EventContext getEventContext() { return new SimpleEventContext( getSecuritySystem().getEventContext() ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public Experimenter getExperimenter(final Long id) { Experimenter e = iQuery.execute( new UserQ( new Parameters( ).addId(id))); if (e == null) { throw new ApiUsageException("No such experimenter: " + id); } | public Experimenter getExperimenter(final Long id) { Experimenter e = iQuery.execute(new UserQ(new Parameters().addId(id))); | public Experimenter getExperimenter(final Long id) { Experimenter e = iQuery.execute( new UserQ( new Parameters( ).addId(id))); if (e == null) { throw new ApiUsageException("No such experimenter: " + id); } return e; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
return e; } | if (e == null) { throw new ApiUsageException("No such experimenter: " + id); } return e; } | public Experimenter getExperimenter(final Long id) { Experimenter e = iQuery.execute( new UserQ( new Parameters( ).addId(id))); if (e == null) { throw new ApiUsageException("No such experimenter: " + id); } return e; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public ExperimenterGroup getGroup(Long id) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(id))); if (g == null) { throw new ApiUsageException("No such group: " + id); } | public ExperimenterGroup getGroup(Long id) { ExperimenterGroup g = iQuery.execute(new GroupQ(new Parameters() .addId(id))); | public ExperimenterGroup getGroup(Long id) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(id))); if (g == null) { throw new ApiUsageException("No such group: " + id); } return g; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
return g; } | if (g == null) { throw new ApiUsageException("No such group: " + id); } return g; } | public ExperimenterGroup getGroup(Long id) { ExperimenterGroup g = iQuery.execute( new GroupQ( new Parameters( ).addId(id))); if (g == null) { throw new ApiUsageException("No such group: " + id); } return g; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
public List<Long> getLeaderOfGroupIds( final Experimenter e ) { Assert.notNull(e); Assert.notNull(e.getId()); List<Long> groupIds = iQuery.execute(new HibernateCallback(){ public Object doInHibernate(Session session) throws HibernateException, SQLException { org.hibernate.Query q = session.createQuery( "select g.id from ExperimenterGroup g where g.details.owner.id = :id"); q.setParameter("id", e.getId()); return q.list(); } }); return groupIds; } | public List<Long> getLeaderOfGroupIds(final Experimenter e) { Assert.notNull(e); Assert.notNull(e.getId()); List<Long> groupIds = iQuery.execute(new HibernateCallback() { public Object doInHibernate(Session session) throws HibernateException, SQLException { org.hibernate.Query q = session .createQuery("select g.id from ExperimenterGroup g where g.details.owner.id = :id"); q.setParameter("id", e.getId()); return q.list(); } }); return groupIds; } | public List<Long> getLeaderOfGroupIds( final Experimenter e ) { Assert.notNull(e); Assert.notNull(e.getId()); List<Long> groupIds = iQuery.execute(new HibernateCallback(){ public Object doInHibernate(Session session) throws HibernateException, SQLException { org.hibernate.Query q = session.createQuery( "select g.id from ExperimenterGroup g where g.details.owner.id = :id"); q.setParameter("id", e.getId()); return q.list(); } }); return groupIds; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7e7c45d25ea1bbef3485ae116b3eb108d9f6f5ef/AdminImpl.java/clean/components/server/src/ome/logic/AdminImpl.java |
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