h4iku/coconut_java2006 · Datasets at Hugging Face

throw new CompilerException ("target for file " + src + " missing!");

throw new CompilerException("target for file " + src + " missing!");

public void setTargetFile (String targetFile) throws CompilerException { this.targetdir = null; if (targetFile == null) { if (this.src != null) throw new CompilerException ("target for file " + src + " missing!"); else throw new CompilerException ("target for file missing!"); } this.targetfile = targetFile; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

throw new CompilerException ("target for file missing!");

throw new CompilerException("target for file missing!");

public void setTargetFile (String targetFile) throws CompilerException { this.targetdir = null; if (targetFile == null) { if (this.src != null) throw new CompilerException ("target for file " + src + " missing!"); else throw new CompilerException ("target for file missing!"); } this.targetfile = targetFile; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

{ return "[PackSource file: '"+src+"' with path '"+targetdir+"']"; }

{ return "[PackSource file: '" + src + "' with path '" + targetdir + "']"; }

public String toString() { return "[PackSource file: '"+src+"' with path '"+targetdir+"']"; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} catch (Exception err)

public Compiler(String filename, String basedir, String kind, String output) { // Default initialisation this.filename = filename; this.basedir = basedir; this.kind = kind; this.output = output; // Creates a temporary temp file for keeping empty directories try { keepDirFile = File.createTempFile("izpack-keepme", ".tmp"); keepDirFile.deleteOnExit(); } catch (Exception err) { err.printStackTrace(); } }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected void addFile(File file, String relPath, List osList, int override, ArrayList list) throws CompilerException

protected void addFile( File file, String relPath, List osList, int override, ArrayList list) throws CompilerException

protected void addFile(File file, String relPath, List osList, int override, ArrayList list) throws CompilerException { // We check if 'file' is correct if (!file.exists()) throw new CompilerException(file.toString() + " does not exist"); // Recursive part if (file.isDirectory()) { File[] files = file.listFiles(); if (files.length == 0) // The directory is empty { // We add a special file so that the empty directory will be written // anyway files = new File[1]; files[0] = keepDirFile; } int size = files.length; String np = relPath + "/" + file.getName(); for (int i = 0; i < size; i++) addFile(files[i], np, osList, override, list); } else { PackSource nf = new PackSource(); nf.src = file.getAbsolutePath(); nf.setTargetDir (relPath); nf.osConstraints = osList; nf.override = override; debug("Adding file: "+ nf.toString()); list.add(nf); } }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else

protected void addFile(File file, String relPath, List osList, int override, ArrayList list) throws CompilerException { // We check if 'file' is correct if (!file.exists()) throw new CompilerException(file.toString() + " does not exist"); // Recursive part if (file.isDirectory()) { File[] files = file.listFiles(); if (files.length == 0) // The directory is empty { // We add a special file so that the empty directory will be written // anyway files = new File[1]; files[0] = keepDirFile; } int size = files.length; String np = relPath + "/" + file.getName(); for (int i = 0; i < size; i++) addFile(files[i], np, osList, override, list); } else { PackSource nf = new PackSource(); nf.src = file.getAbsolutePath(); nf.setTargetDir (relPath); nf.osConstraints = osList; nf.override = override; debug("Adding file: "+ nf.toString()); list.add(nf); } }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

nf.setTargetDir (relPath);

nf.setTargetDir(relPath);

protected void addFile(File file, String relPath, List osList, int override, ArrayList list) throws CompilerException { // We check if 'file' is correct if (!file.exists()) throw new CompilerException(file.toString() + " does not exist"); // Recursive part if (file.isDirectory()) { File[] files = file.listFiles(); if (files.length == 0) // The directory is empty { // We add a special file so that the empty directory will be written // anyway files = new File[1]; files[0] = keepDirFile; } int size = files.length; String np = relPath + "/" + file.getName(); for (int i = 0; i < size; i++) addFile(files[i], np, osList, override, list); } else { PackSource nf = new PackSource(); nf.src = file.getAbsolutePath(); nf.setTargetDir (relPath); nf.osConstraints = osList; nf.override = override; debug("Adding file: "+ nf.toString()); list.add(nf); } }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

debug("Adding file: "+ nf.toString());

debug("Adding file: " + nf.toString());

protected void addFile(File file, String relPath, List osList, int override, ArrayList list) throws CompilerException { // We check if 'file' is correct if (!file.exists()) throw new CompilerException(file.toString() + " does not exist"); // Recursive part if (file.isDirectory()) { File[] files = file.listFiles(); if (files.length == 0) // The directory is empty { // We add a special file so that the empty directory will be written // anyway files = new File[1]; files[0] = keepDirFile; } int size = files.length; String np = relPath + "/" + file.getName(); for (int i = 0; i < size; i++) addFile(files[i], np, osList, override, list); } else { PackSource nf = new PackSource(); nf.src = file.getAbsolutePath(); nf.setTargetDir (relPath); nf.osConstraints = osList; nf.override = override; debug("Adding file: "+ nf.toString()); list.add(nf); } }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException

protected void addFileSet( String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException

protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { DirectoryScanner ds = new DirectoryScanner(); ds.setIncludes(includes); ds.setExcludes(excludes); ds.setBasedir(new File(path)); ds.setCaseSensitive(casesensitive); ds.scan(); String[] files = ds.getIncludedFiles(); String[] dirs = ds.getIncludedDirectories(); /* Old buggy code String newRelativePath = null; String absolutBasePath = test.getParentFile().getAbsolutePath(); String absolutPath = test.getAbsolutePath(); String absolutFilePath = null; int copyPathFrom = absolutBasePath.length() + 1; for (int i = 0; i < files.length; i++) { File file = new File(absolutPath + File.separator + files[i]); absolutFilePath = file.getParentFile().getAbsolutePath(); newRelativePath = relPath + File.separator + absolutFilePath.substring(copyPathFrom); //FIX ME: the override for fileset is by default true, needs to be changed addFile(file, newRelativePath, targetOs, true, list); } */ // New working code (for files) String filePath, instPath, expPath; int pathLimit; File file; for (int i = 0; i < files.length; ++i) { filePath = path + File.separator + files[i]; expPath = relPath + File.separator + files[i]; file = new File(filePath); pathLimit = expPath.indexOf(file.getName()); if (pathLimit > 0) instPath = expPath.substring(0, pathLimit); else instPath = relPath; addFile(file, instPath, osList, override, list); } // Empty directories are left by the previous code section, so we need to // take care of them for (int i = 0; i < dirs.length; ++i) { expPath = path + File.separator + dirs[i]; File dir = new File(expPath); if (dir.list().length == 0) { instPath = relPath + File.separator + dirs[i]; pathLimit = instPath.indexOf(dir.getName()); instPath = instPath.substring(0, pathLimit); addFile(dir, instPath, osList, override, list); } } } else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { DirectoryScanner ds = new DirectoryScanner(); ds.setIncludes(includes); ds.setExcludes(excludes); ds.setBasedir(new File(path)); ds.setCaseSensitive(casesensitive); ds.scan(); String[] files = ds.getIncludedFiles(); String[] dirs = ds.getIncludedDirectories(); /* Old buggy code String newRelativePath = null; String absolutBasePath = test.getParentFile().getAbsolutePath(); String absolutPath = test.getAbsolutePath(); String absolutFilePath = null; int copyPathFrom = absolutBasePath.length() + 1; for (int i = 0; i < files.length; i++) { File file = new File(absolutPath + File.separator + files[i]); absolutFilePath = file.getParentFile().getAbsolutePath(); newRelativePath = relPath + File.separator + absolutFilePath.substring(copyPathFrom); //FIX ME: the override for fileset is by default true, needs to be changed addFile(file, newRelativePath, targetOs, true, list); } */ // New working code (for files) String filePath, instPath, expPath; int pathLimit; File file; for (int i = 0; i < files.length; ++i) { filePath = path + File.separator + files[i]; expPath = relPath + File.separator + files[i]; file = new File(filePath); pathLimit = expPath.indexOf(file.getName()); if (pathLimit > 0) instPath = expPath.substring(0, pathLimit); else instPath = relPath; addFile(file, instPath, osList, override, list); } // Empty directories are left by the previous code section, so we need to // take care of them for (int i = 0; i < dirs.length; ++i) { expPath = path + File.separator + dirs[i]; File dir = new File(expPath); if (dir.list().length == 0) { instPath = relPath + File.separator + dirs[i]; pathLimit = instPath.indexOf(dir.getName()); instPath = instPath.substring(0, pathLimit); addFile(dir, instPath, osList, override, list); } } } else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { DirectoryScanner ds = new DirectoryScanner(); ds.setIncludes(includes); ds.setExcludes(excludes); ds.setBasedir(new File(path)); ds.setCaseSensitive(casesensitive); ds.scan(); String[] files = ds.getIncludedFiles(); String[] dirs = ds.getIncludedDirectories(); /* Old buggy code String newRelativePath = null; String absolutBasePath = test.getParentFile().getAbsolutePath(); String absolutPath = test.getAbsolutePath(); String absolutFilePath = null; int copyPathFrom = absolutBasePath.length() + 1; for (int i = 0; i < files.length; i++) { File file = new File(absolutPath + File.separator + files[i]); absolutFilePath = file.getParentFile().getAbsolutePath(); newRelativePath = relPath + File.separator + absolutFilePath.substring(copyPathFrom); //FIX ME: the override for fileset is by default true, needs to be changed addFile(file, newRelativePath, targetOs, true, list); } */ // New working code (for files) String filePath, instPath, expPath; int pathLimit; File file; for (int i = 0; i < files.length; ++i) { filePath = path + File.separator + files[i]; expPath = relPath + File.separator + files[i]; file = new File(filePath); pathLimit = expPath.indexOf(file.getName()); if (pathLimit > 0) instPath = expPath.substring(0, pathLimit); else instPath = relPath; addFile(file, instPath, osList, override, list); } // Empty directories are left by the previous code section, so we need to // take care of them for (int i = 0; i < dirs.length; ++i) { expPath = path + File.separator + dirs[i]; File dir = new File(expPath); if (dir.list().length == 0) { instPath = relPath + File.separator + dirs[i]; pathLimit = instPath.indexOf(dir.getName()); instPath = instPath.substring(0, pathLimit); addFile(dir, instPath, osList, override, list); } } } else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { DirectoryScanner ds = new DirectoryScanner(); ds.setIncludes(includes); ds.setExcludes(excludes); ds.setBasedir(new File(path)); ds.setCaseSensitive(casesensitive); ds.scan(); String[] files = ds.getIncludedFiles(); String[] dirs = ds.getIncludedDirectories(); /* Old buggy code String newRelativePath = null; String absolutBasePath = test.getParentFile().getAbsolutePath(); String absolutPath = test.getAbsolutePath(); String absolutFilePath = null; int copyPathFrom = absolutBasePath.length() + 1; for (int i = 0; i < files.length; i++) { File file = new File(absolutPath + File.separator + files[i]); absolutFilePath = file.getParentFile().getAbsolutePath(); newRelativePath = relPath + File.separator + absolutFilePath.substring(copyPathFrom); //FIX ME: the override for fileset is by default true, needs to be changed addFile(file, newRelativePath, targetOs, true, list); } */ // New working code (for files) String filePath, instPath, expPath; int pathLimit; File file; for (int i = 0; i < files.length; ++i) { filePath = path + File.separator + files[i]; expPath = relPath + File.separator + files[i]; file = new File(filePath); pathLimit = expPath.indexOf(file.getName()); if (pathLimit > 0) instPath = expPath.substring(0, pathLimit); else instPath = relPath; addFile(file, instPath, osList, override, list); } // Empty directories are left by the previous code section, so we need to // take care of them for (int i = 0; i < dirs.length; ++i) { expPath = path + File.separator + dirs[i]; File dir = new File(expPath); if (dir.list().length == 0) { instPath = relPath + File.separator + dirs[i]; pathLimit = instPath.indexOf(dir.getName()); instPath = instPath.substring(0, pathLimit); addFile(dir, instPath, osList, override, list); } } } else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path);

} else throw new CompilerException( "\"dir\" attribute of fileset is not valid: " + path);

protected void addFileSet(String path, String[] includes, String[] excludes, String relPath, List osList, ArrayList list, boolean casesensitive, int override) throws CompilerException { File test = new File(path); if (test.isDirectory()) { DirectoryScanner ds = new DirectoryScanner(); ds.setIncludes(includes); ds.setExcludes(excludes); ds.setBasedir(new File(path)); ds.setCaseSensitive(casesensitive); ds.scan(); String[] files = ds.getIncludedFiles(); String[] dirs = ds.getIncludedDirectories(); /* Old buggy code String newRelativePath = null; String absolutBasePath = test.getParentFile().getAbsolutePath(); String absolutPath = test.getAbsolutePath(); String absolutFilePath = null; int copyPathFrom = absolutBasePath.length() + 1; for (int i = 0; i < files.length; i++) { File file = new File(absolutPath + File.separator + files[i]); absolutFilePath = file.getParentFile().getAbsolutePath(); newRelativePath = relPath + File.separator + absolutFilePath.substring(copyPathFrom); //FIX ME: the override for fileset is by default true, needs to be changed addFile(file, newRelativePath, targetOs, true, list); } */ // New working code (for files) String filePath, instPath, expPath; int pathLimit; File file; for (int i = 0; i < files.length; ++i) { filePath = path + File.separator + files[i]; expPath = relPath + File.separator + files[i]; file = new File(filePath); pathLimit = expPath.indexOf(file.getName()); if (pathLimit > 0) instPath = expPath.substring(0, pathLimit); else instPath = relPath; addFile(file, instPath, osList, override, list); } // Empty directories are left by the previous code section, so we need to // take care of them for (int i = 0; i < dirs.length; ++i) { expPath = path + File.separator + dirs[i]; File dir = new File(expPath); if (dir.list().length == 0) { instPath = relPath + File.separator + dirs[i]; pathLimit = instPath.indexOf(dir.getName()); instPath = instPath.substring(0, pathLimit); addFile(dir, instPath, osList, override, list); } } } else throw new CompilerException("\"dir\" attribute of fileset is not valid: " + path); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected void addSingleFile(File file, String targetFile, List osList, int override, ArrayList list) throws CompilerException

protected void addSingleFile( File file, String targetFile, List osList, int override, ArrayList list) throws CompilerException

protected void addSingleFile(File file, String targetFile, List osList, int override, ArrayList list) throws CompilerException { //System.out.println ("adding single file " + file.getName() + " as " + targetFile); PackSource nf = new PackSource(); nf.src = file.getAbsolutePath(); nf.setTargetFile (targetFile); nf.osConstraints = osList; nf.override = override; list.add(nf); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

nf.setTargetFile (targetFile);

nf.setTargetFile(targetFile);

protected void addSingleFile(File file, String targetFile, List osList, int override, ArrayList list) throws CompilerException { //System.out.println ("adding single file " + file.getName() + " as " + targetFile); PackSource nf = new PackSource(); nf.src = file.getAbsolutePath(); nf.setTargetFile (targetFile); nf.osConstraints = osList; nf.override = override; list.add(nf); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if (Debug.tracing()) { packagerListener.packagerMsg(s); }

private void debug(String s) { if (Debug.tracing())//if you are wondering what files gets added to the installer { packagerListener.packagerMsg(s); } }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base);

if (!base.canRead() || !base.isDirectory()) throw new CompilerException("Invalid base directory: " + base);

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml");

inStream = getClass().getResourceAsStream( "/bin/langpacks/installer/" + str + ".xml");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml");

inStream = new FileInputStream( Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif");

inStream = getClass().getResourceAsStream("/bin/langpacks/flags/" + str + ".gif");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif");

inStream = new FileInputStream( Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream.close ();

inStream.close();

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

System.err.println("ERROR: cannot parse resource from stream. (Internal error.)");

System.err.println( "ERROR: cannot parse resource from stream. (Internal error.)");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile());

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed.");

} else { System.err.println( "ERROR: no variable is defined. " + res.src + " is not parsed.");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream.close (); } } else

inStream.close(); } } else

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

inStream.close ();

inStream.close();

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

Panel p = (Panel)iter.next();

Panel p = (Panel) iter.next();

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar");

InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/" + str + ".jar");

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

panel_is = new JarInputStream (jarInStream); } catch (IOException e)

panel_is = new JarInputStream(jarInStream); } catch (IOException e)

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

panel_is = null; }

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

{ if (panelsCache.contains(str)) continue;

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str);

packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File( Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str);

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if (panelsCache.contains(str)) continue;

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

Map storedFiles = new HashMap();

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush(); ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);

ZipOutputStream zipOut = packager.addPack( i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush(); ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

String targetFilename = p.getTargetFilename ();

String targetFilename = p.getTargetFilename();

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/');

if ('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/');

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; }

PackFile pf = new PackFile( targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[]) storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int) info[0], info[1]); addFile = false; }

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

objOut.flush(); long pos = dos.getByteCount(); if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes; in.close();

objOut.flush(); long pos = dos.getByteCount(); if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException("File size mismatch when reading " + f); storedFiles.put(p.src, new long[] { i, pos }); } packageBytes += nbytes; in.close();

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public void executeCompiler() throws Exception { // normalize and test: TODO: may allow failure if we require write access File base = new File(basedir).getAbsoluteFile(); if (! base.canRead() || ! base.isDirectory()) throw new CompilerException("Invalid base directory: "+base); // Usefull variables int i; String str; Iterator iter; InputStream inStream; // We get the XML data tree XMLElement data = getXMLTree(); // We get the Packager Packager packager = getPackager(); // We add the variable declaration packager.setVariables(getVariables(data)); // We add the info packager.setInfo(getInfo(data)); // We add the GUIPrefs packager.setGUIPrefs(getGUIPrefs(data)); // We add the language packs iter = getLangpacksCodes(data).iterator(); while (iter.hasNext()) { str = (String) iter.next(); // The language pack - first try to get stream directly (for standalone compiler) inStream = getClass().getResourceAsStream("/bin/langpacks/installer/"+str+".xml"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "installer" + File.separator + str + ".xml"); } packager.addLangPack(str, inStream); // The flag - try to get stream for standalone compiler inStream = getClass ().getResourceAsStream("/bin/langpacks/flags/"+str+".gif"); if (inStream == null) { inStream = new FileInputStream(Compiler.IZPACK_HOME + "bin" + File.separator + "langpacks" + File.separator + "flags" + File.separator + str + ".gif"); } packager.addResource("flag." + str, inStream); inStream.close (); } // We add the resources iter = getResources(data).iterator(); while (iter.hasNext()) { Resource res = (Resource) iter.next(); if (res.parse) { if ((res.src == null) || (res.src_is != null)) { System.err.println("ERROR: cannot parse resource from stream. (Internal error.)"); packager.addResource(res.id, res.src_is); } if (null != varMap) { File resFile = new File(res.src); FileInputStream inFile = new FileInputStream(resFile); BufferedInputStream bin = new BufferedInputStream(inFile, 5120); File parsedFile = File.createTempFile("izpp", null, resFile.getParentFile()); FileOutputStream outFile = new FileOutputStream(parsedFile); BufferedOutputStream bout = new BufferedOutputStream(outFile, 5120); VariableSubstitutor vs = new VariableSubstitutor(varMap); vs.substitute(bin, bout, res.type, res.encoding); bin.close(); bout.close(); inFile = new FileInputStream(parsedFile); packager.addResource(res.id, inFile); inFile.close(); parsedFile.delete(); } else { System.err.println("ERROR: no variable is defined. " + res.src + " is not parsed."); inStream = new FileInputStream(res.src); packager.addResource(res.id, inStream); inStream.close (); } } else { if (res.src != null) { inStream = new FileInputStream(res.src); } else { inStream = res.src_is; } packager.addResource(res.id, inStream); if (res.src != null) inStream.close (); } } // We add the native libraries iter = getNativeLibraries(data).iterator(); while (iter.hasNext()) { NativeLibrary nat = (NativeLibrary) iter.next(); inStream = new FileInputStream(nat.path); packager.addNativeLibrary(nat.name, inStream); } // We add the additionnal jar files content iter = getJars(data).iterator(); while (iter.hasNext()) packager.addJarContent((String) iter.next()); // We add the panels ArrayList panels = getPanels(data); TreeSet panelsCache = new TreeSet(); iter = getPanels(data).iterator(); while (iter.hasNext()) { Panel p = (Panel)iter.next(); // We locate the panel classes directory str = p.className; // first try to get a Jar file for standalone compiler JarInputStream panel_is = null; try { InputStream jarInStream = getClass().getResourceAsStream("/bin/panels/"+str+".jar"); if (jarInStream != null) panel_is = new JarInputStream (jarInStream); } catch (IOException e) { // for now, ignore this - try to read panel classes from filesystem panel_is = null; } if (panel_is != null) { if (panelsCache.contains(str)) continue; panelsCache.add(str); // now add files ZipEntry entry = null; while ((entry = panel_is.getNextEntry()) != null) packager.addPanelClass(entry.getName(), panel_is); } else { File dir = new File(Compiler.IZPACK_HOME + "bin" + File.separator + "panels" + File.separator + str); if (!dir.exists()) throw new Exception(str + " panel does not exist"); // We add each file in the panel folder if (panelsCache.contains(str)) continue; panelsCache.add(str); File[] files = dir.listFiles(); int nf = files.length; for (int j = 0; j < nf; j++) { if (files[j].isDirectory()) continue; FileInputStream inClass = new FileInputStream(files[j]); packager.addPanelClass(files[j].getName(), inClass); } } } // We set the panels order packager.setPanelsOrder(panels); Map storedFiles = new HashMap(); // We add the packs i = 0; //pack counter iter = getPacks(data).iterator(); while (iter.hasNext()) { Pack pack = (Pack) iter.next(); ZipOutputStream zipOut = packager.addPack(i, pack.name, pack.osConstraints, pack.required, pack.description, pack.preselected); zipOut.flush();//make sure buffers are flushed before we start counting ByteCountingOutputStream dos = new ByteCountingOutputStream(zipOut);//stream with byte counter ObjectOutputStream objOut = new ObjectOutputStream(dos); // We write the pack data objOut.writeInt(pack.packFiles.size()); Iterator iter2 = pack.packFiles.iterator(); long packageBytes = 0; while (iter2.hasNext()) { // Initialisations PackSource p = (PackSource) iter2.next(); File f = new File(p.src); FileInputStream in = new FileInputStream(f); long nbytes = f.length(); long mtime = f.lastModified(); String targetFilename = p.getTargetFilename (); // pack paths in canonical (unix) form regardless of current host o/s: if('/' != File.separatorChar) { targetFilename = targetFilename.replace(File.separatorChar, '/'); } // Writing PackFile pf = new PackFile(targetFilename, p.osConstraints, nbytes, mtime, p.override); long[] info = (long[])storedFiles.get(p.src); boolean addFile = true; if (info != null && packager.allowPackFileBackReferences()) { pf.setPreviousPackFileRef((int)info[0],info[1]); addFile = false; } objOut.writeObject(pf); objOut.flush();//make sure it is written long pos = dos.getByteCount();//get the position if (addFile) { byte[] buffer = new byte[5120]; long bytesWritten = 0; int bytesInBuffer; while ((bytesInBuffer = in.read(buffer)) != -1) { objOut.write(buffer, 0, bytesInBuffer); bytesWritten += bytesInBuffer; } if (bytesWritten != nbytes) throw new IOException ("File size mismatch when reading " + f); storedFiles.put(p.src,new long[]{i,pos}); } packageBytes += nbytes;//aldo could be not really written we still want to know size. in.close(); } packager.packAdded(i, packageBytes); // Write out information about parsable files objOut.writeInt(pack.parsables.size()); iter2 = pack.parsables.iterator(); while (iter2.hasNext()) objOut.writeObject(iter2.next()); // Write out information about executable files objOut.writeInt(pack.executables.size()); iter2 = pack.executables.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Write out information about executable files objOut.writeInt(pack.updatechecks.size()); iter2 = pack.updatechecks.iterator(); while (iter2.hasNext()) { objOut.writeObject(iter2.next()); } // Cleanup objOut.flush(); zipOut.closeEntry(); i++; } // We ask the packager to finish packager.finish(); this.compileFailed = false; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected GUIPrefs getGUIPrefs(XMLElement data) throws CompilerException { // We get the XMLElement & the values XMLElement gp = data.getFirstChildNamed("guiprefs"); Integer integer; GUIPrefs p = new GUIPrefs(); if (gp == null) return p; p.resizable = requireYesNoAttribute(gp, "resizable"); p.width = requireIntAttribute(gp, "width"); p.height = requireIntAttribute(gp, "height"); // We return the GUIPrefs return p; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected GUIPrefs getGUIPrefs(XMLElement data) throws CompilerException { // We get the XMLElement & the values XMLElement gp = data.getFirstChildNamed("guiprefs"); Integer integer; GUIPrefs p = new GUIPrefs(); if (gp == null) return p; p.resizable = requireYesNoAttribute(gp, "resizable"); p.width = requireIntAttribute(gp, "width"); p.height = requireIntAttribute(gp, "height"); // We return the GUIPrefs return p; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

XMLElement uninstallInfo = root.getFirstChildNamed ("uninstaller");

XMLElement uninstallInfo = root.getFirstChildNamed("uninstaller");

protected Info getInfo(XMLElement data) throws Exception { // Initialisation Info info = new Info(); XMLElement root = requireChildNamed(data, "info"); info.setAppName(requireContent(requireChildNamed(root, "appname"))); info.setAppVersion(requireContent(requireChildNamed(root, "appversion"))); info.setAppURL(requireContent(requireChildNamed(root, "url"))); // We get the authors list XMLElement authors = root.getFirstChildNamed("authors"); if (authors != null) { Iterator iter = authors.getChildrenNamed("author").iterator(); while (iter.hasNext()) { XMLElement author = (XMLElement) iter.next(); String name = requireAttribute(author, "name"); String email = requireAttribute(author, "email"); info.addAuthor(new Info.Author(name, email)); } } // We get the java version required XMLElement javaVersion = root.getFirstChildNamed("javaversion"); if (javaVersion != null) info.setJavaVersion(javaVersion.getContent()); XMLElement uninstallInfo = root.getFirstChildNamed ("uninstaller"); if (uninstallInfo != null) info.setWriteUninstaller(validateYesNoAttribute(uninstallInfo, "write", YES)); // We return the suitable Info object return info; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

info.setWriteUninstaller(validateYesNoAttribute(uninstallInfo, "write", YES));

info.setWriteUninstaller( validateYesNoAttribute(uninstallInfo, "write", YES));

protected Info getInfo(XMLElement data) throws Exception { // Initialisation Info info = new Info(); XMLElement root = requireChildNamed(data, "info"); info.setAppName(requireContent(requireChildNamed(root, "appname"))); info.setAppVersion(requireContent(requireChildNamed(root, "appversion"))); info.setAppURL(requireContent(requireChildNamed(root, "url"))); // We get the authors list XMLElement authors = root.getFirstChildNamed("authors"); if (authors != null) { Iterator iter = authors.getChildrenNamed("author").iterator(); while (iter.hasNext()) { XMLElement author = (XMLElement) iter.next(); String name = requireAttribute(author, "name"); String email = requireAttribute(author, "email"); info.addAuthor(new Info.Author(name, email)); } } // We get the java version required XMLElement javaVersion = root.getFirstChildNamed("javaversion"); if (javaVersion != null) info.setJavaVersion(javaVersion.getContent()); XMLElement uninstallInfo = root.getFirstChildNamed ("uninstaller"); if (uninstallInfo != null) info.setWriteUninstaller(validateYesNoAttribute(uninstallInfo, "write", YES)); // We return the suitable Info object return info; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected ArrayList getLangpacksCodes(XMLElement data) throws CompilerException

protected ArrayList getLangpacksCodes(XMLElement data) throws CompilerException { // Initialisation ArrayList langpacks = new ArrayList(); XMLElement locals = requireChildNamed(data, "locale"); // We process each langpack markup Iterator iter = locals.getChildrenNamed("langpack").iterator(); while (iter.hasNext()) { XMLElement pack = (XMLElement) iter.next(); langpacks.add(requireAttribute(pack, "iso3")); } if (langpacks.isEmpty()) parseError (locals, "<locale> requires a <langpack>"); // We return the ArrayList return langpacks; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

parseError (locals, "<locale> requires a <langpack>");

parseError(locals, "<locale> requires a <langpack>");

protected ArrayList getLangpacksCodes(XMLElement data) throws CompilerException { // Initialisation ArrayList langpacks = new ArrayList(); XMLElement locals = requireChildNamed(data, "locale"); // We process each langpack markup Iterator iter = locals.getChildrenNamed("langpack").iterator(); while (iter.hasNext()) { XMLElement pack = (XMLElement) iter.next(); langpacks.add(requireAttribute(pack, "iso3")); } if (langpacks.isEmpty()) parseError (locals, "<locale> requires a <langpack>"); // We return the ArrayList return langpacks; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

nat.path = IZPACK_HOME + "bin" + File.separator + "native" + File.separator + el.getAttribute("type") + File.separator + el.getAttribute("name");

protected ArrayList getNativeLibraries(XMLElement data) throws Exception { // Initialisation ArrayList natives = new ArrayList(); Vector v = data.getChildrenNamed("native"); // We add each native lib path to the list Iterator iter = v.iterator(); while (iter.hasNext()) { XMLElement el = (XMLElement) iter.next(); NativeLibrary nat = new NativeLibrary(); nat.path = IZPACK_HOME + "bin" + File.separator + "native" + File.separator + el.getAttribute("type") + File.separator + el.getAttribute("name"); nat.name = el.getAttribute("name"); natives.add(nat); } // We return the paths to the native libraries return natives; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected int getOverrideValue (XMLElement f)

protected int getOverrideValue(XMLElement f)

protected int getOverrideValue (XMLElement f) { int override = PackSource.OVERRIDE_UPDATE; String override_val = f.getAttribute("override"); if (override_val != null) { if (override_val.equalsIgnoreCase("true")) { override = PackSource.OVERRIDE_TRUE; } else if (override_val.equalsIgnoreCase("false")) { override = PackSource.OVERRIDE_FALSE; } else if (override_val.equalsIgnoreCase("asktrue")) { override = PackSource.OVERRIDE_ASK_TRUE; } else if (override_val.equalsIgnoreCase("askfalse")) { override = PackSource.OVERRIDE_ASK_FALSE; } else if (override_val.equalsIgnoreCase("update")) { override = PackSource.OVERRIDE_UPDATE; } } return override; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else if (override_val.equalsIgnoreCase("false"))

protected int getOverrideValue (XMLElement f) { int override = PackSource.OVERRIDE_UPDATE; String override_val = f.getAttribute("override"); if (override_val != null) { if (override_val.equalsIgnoreCase("true")) { override = PackSource.OVERRIDE_TRUE; } else if (override_val.equalsIgnoreCase("false")) { override = PackSource.OVERRIDE_FALSE; } else if (override_val.equalsIgnoreCase("asktrue")) { override = PackSource.OVERRIDE_ASK_TRUE; } else if (override_val.equalsIgnoreCase("askfalse")) { override = PackSource.OVERRIDE_ASK_FALSE; } else if (override_val.equalsIgnoreCase("update")) { override = PackSource.OVERRIDE_UPDATE; } } return override; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else if (override_val.equalsIgnoreCase("asktrue"))

protected int getOverrideValue (XMLElement f) { int override = PackSource.OVERRIDE_UPDATE; String override_val = f.getAttribute("override"); if (override_val != null) { if (override_val.equalsIgnoreCase("true")) { override = PackSource.OVERRIDE_TRUE; } else if (override_val.equalsIgnoreCase("false")) { override = PackSource.OVERRIDE_FALSE; } else if (override_val.equalsIgnoreCase("asktrue")) { override = PackSource.OVERRIDE_ASK_TRUE; } else if (override_val.equalsIgnoreCase("askfalse")) { override = PackSource.OVERRIDE_ASK_FALSE; } else if (override_val.equalsIgnoreCase("update")) { override = PackSource.OVERRIDE_UPDATE; } } return override; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else if (override_val.equalsIgnoreCase("askfalse"))

protected int getOverrideValue (XMLElement f) { int override = PackSource.OVERRIDE_UPDATE; String override_val = f.getAttribute("override"); if (override_val != null) { if (override_val.equalsIgnoreCase("true")) { override = PackSource.OVERRIDE_TRUE; } else if (override_val.equalsIgnoreCase("false")) { override = PackSource.OVERRIDE_FALSE; } else if (override_val.equalsIgnoreCase("asktrue")) { override = PackSource.OVERRIDE_ASK_TRUE; } else if (override_val.equalsIgnoreCase("askfalse")) { override = PackSource.OVERRIDE_ASK_FALSE; } else if (override_val.equalsIgnoreCase("update")) { override = PackSource.OVERRIDE_UPDATE; } } return override; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} else if (override_val.equalsIgnoreCase("update"))

protected int getOverrideValue (XMLElement f) { int override = PackSource.OVERRIDE_UPDATE; String override_val = f.getAttribute("override"); if (override_val != null) { if (override_val.equalsIgnoreCase("true")) { override = PackSource.OVERRIDE_TRUE; } else if (override_val.equalsIgnoreCase("false")) { override = PackSource.OVERRIDE_FALSE; } else if (override_val.equalsIgnoreCase("asktrue")) { override = PackSource.OVERRIDE_ASK_TRUE; } else if (override_val.equalsIgnoreCase("askfalse")) { override = PackSource.OVERRIDE_ASK_FALSE; } else if (override_val.equalsIgnoreCase("update")) { override = PackSource.OVERRIDE_UPDATE; } } return override; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

else if (kind.equalsIgnoreCase(STANDARD_KUNSTSTOFF))

protected Packager getPackager() throws Exception { if (kind.equalsIgnoreCase(STANDARD)) return new StdPackager(output, packagerListener); else if (kind.equalsIgnoreCase(STANDARD_KUNSTSTOFF)) return new StdKunststoffPackager(output, packagerListener); else if (kind.equalsIgnoreCase(WEB)) return new WebPackager(output, packagerListener); else if (kind.equalsIgnoreCase(WEB_KUNSTSTOFF)) return new WebKunststoffPackager(output, packagerListener); else throw new Exception("unknown installer kind"); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

else if (kind.equalsIgnoreCase(WEB))

protected Packager getPackager() throws Exception { if (kind.equalsIgnoreCase(STANDARD)) return new StdPackager(output, packagerListener); else if (kind.equalsIgnoreCase(STANDARD_KUNSTSTOFF)) return new StdKunststoffPackager(output, packagerListener); else if (kind.equalsIgnoreCase(WEB)) return new WebPackager(output, packagerListener); else if (kind.equalsIgnoreCase(WEB_KUNSTSTOFF)) return new WebKunststoffPackager(output, packagerListener); else throw new Exception("unknown installer kind"); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

else if (kind.equalsIgnoreCase(WEB_KUNSTSTOFF))

protected Packager getPackager() throws Exception { if (kind.equalsIgnoreCase(STANDARD)) return new StdPackager(output, packagerListener); else if (kind.equalsIgnoreCase(STANDARD_KUNSTSTOFF)) return new StdKunststoffPackager(output, packagerListener); else if (kind.equalsIgnoreCase(WEB)) return new WebPackager(output, packagerListener); else if (kind.equalsIgnoreCase(WEB_KUNSTSTOFF)) return new WebKunststoffPackager(output, packagerListener); else throw new Exception("unknown installer kind"); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

pack.osConstraints = OsConstraint.getOsList (el);

pack.osConstraints = OsConstraint.getOsList(el);

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList));

XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList(p); pack.parsables.add( new ParsableFile( targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList));

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

XMLElement e = (XMLElement) iter.next(); int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; String executeClass = e.getAttribute("class"); int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile));

XMLElement e = (XMLElement) iter.next(); int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; String executeClass = e.getAttribute("class"); int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; boolean keepFile = false; val = e.getAttribute("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add( new ExecutableFile( targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile));

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); String targetdir_attr = requireAttribute (f, "targetdir");

int override = getOverrideValue(f); List osList = OsConstraint.getOsList(f); String targetdir_attr = requireAttribute(f, "targetdir");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x)

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

String src_attr = requireAttribute (f, "src");

String src_attr = requireAttribute(f, "src");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if (new File (src_attr).isAbsolute ())

if (new File(src_attr).isAbsolute())

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); String target_attr = requireAttribute (f, "target");

int override = getOverrideValue(f); List osList = OsConstraint.getOsList(f); String target_attr = requireAttribute(f, "target");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x)

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

String dir_attr = requireAttribute (f, "dir");

String dir_attr = requireAttribute(f, "dir");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

int override = getOverrideValue (f);

int override = getOverrideValue(f);

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

List osList = OsConstraint.getOsList (f); try { addFileSet(path, includes, excludes,

List osList = OsConstraint.getOsList(f); try { addFileSet( path, includes, excludes,

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} catch (CompilerException x)

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

ArrayList includesList = new ArrayList ();

ArrayList includesList = new ArrayList();

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next();

for (Iterator include_it = includesElementList.iterator(); include_it.hasNext(); ) { XMLElement inc_el = (XMLElement) include_it.next();

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

{ includesList.add (name);

{ includesList.add(name); } else { parseError( inc_el, "missing \"name\" attribute for <include> in <updatecheck>");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>");

} } ArrayList excludesList = new ArrayList(); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext(); ) { XMLElement excl_el = (XMLElement) exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add(name); } else { parseError( excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); }

pack.updatechecks.add( new UpdateCheck(includesList, excludesList, casesensitive)); }

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

parseError (root, "<packs> requires a <pack>");

parseError(root, "<packs> requires a <pack>");

protected ArrayList getPacks(XMLElement data) throws CompilerException { // Initialisation ArrayList packs = new ArrayList(); XMLElement root = requireChildNamed(data, "packs"); // dummy variable used for values from XML String val; // We process each pack markup int packCounter = 0; Iterator packIter = root.getChildrenNamed("pack").iterator(); while (packIter.hasNext()) { XMLElement el = (XMLElement) packIter.next(); // Trivial initialisations Pack pack = new Pack(); pack.number = packCounter++; pack.name = requireAttribute(el, "name"); pack.osConstraints = OsConstraint.getOsList (el); // TODO: unverified pack.required = requireYesNoAttribute(el, "required"); pack.description = requireChildNamed(el, "description").getContent(); pack.preselected = validateYesNoAttribute(el, "preselected", YES); // We get the parsables list Iterator iter = el.getChildrenNamed("parsable").iterator(); while (iter.hasNext()) { XMLElement p = (XMLElement) iter.next(); String targetFile = requireAttribute(p, "targetfile"); List osList = OsConstraint.getOsList (p); // TODO: unverified pack.parsables.add (new ParsableFile(targetFile, p.getAttribute("type", "plain"), p.getAttribute("encoding", null), osList)); } // We get the executables list iter = el.getChildrenNamed("executable").iterator(); while (iter.hasNext()) { XMLElement e = (XMLElement) iter.next(); // when to execute this executable int executeOn = ExecutableFile.NEVER; val = e.getAttribute("stage", "never"); if ("postinstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.POSTINSTALL; else if ("uninstall".equalsIgnoreCase(val)) executeOn = ExecutableFile.UNINSTALL; // main class of this executable String executeClass = e.getAttribute("class"); // type of this executable int executeType = ExecutableFile.BIN; val = e.getAttribute("type", "bin"); if ("jar".equalsIgnoreCase(val)) executeType = ExecutableFile.JAR; // what to do if execution fails int onFailure = ExecutableFile.ASK; val = e.getAttribute("failure", "ask"); if ("abort".equalsIgnoreCase(val)) onFailure = ExecutableFile.ABORT; else if ("warn".equalsIgnoreCase(val)) onFailure = ExecutableFile.WARN; // whether to keep the executable after executing it boolean keepFile = false; val = e.getAttribute ("keep"); if ("true".equalsIgnoreCase(val)) keepFile = true; // get arguments for this executable ArrayList argList = new ArrayList(); XMLElement args = e.getFirstChildNamed("args"); if (null != args) { argList = new ArrayList(); Iterator argIterator = args.getChildrenNamed("arg").iterator(); while (argIterator.hasNext()) { XMLElement arg = (XMLElement) argIterator.next(); argList.add(requireAttribute(arg, "value")); } } List osList = OsConstraint.getOsList(e); // TODO: unverified String targetfile_attr = requireAttribute(e, "targetfile"); pack.executables.add(new ExecutableFile(targetfile_attr, executeType, executeClass, executeOn, onFailure, argList, osList, keepFile)); } // We get the files list iter = el.getChildrenNamed("file").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute(f, "src"); String path; if (new File(src_attr).isAbsolute()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String targetdir_attr = requireAttribute (f, "targetdir"); try { addFile(file, targetdir_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the singlefiles list iter = el.getChildrenNamed("singlefile").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String src_attr = requireAttribute (f, "src"); String path; if (new File (src_attr).isAbsolute ()) path = src_attr; else path = basedir + File.separator + src_attr; File file = new File(path); int override = getOverrideValue (f); List osList = OsConstraint.getOsList (f); // TODO: unverified String target_attr = requireAttribute (f, "target"); try { addSingleFile(file, target_attr, osList, override, pack.packFiles); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // We get the fileset list iter = el.getChildrenNamed("fileset").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String dir_attr = requireAttribute (f, "dir"); String path; if (new File(dir_attr).isAbsolute()) path = dir_attr; else path = basedir + File.separator + dir_attr; boolean casesensitive = validateYesNoAttribute(f, "casesensitive", YES); // get includes and excludes Vector xcludesList = f.getChildrenNamed("include"); String[] includes = null; XMLElement xclude = null; if (xcludesList.size() > 0) { includes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); includes[j] = requireAttribute(xclude, "name"); } } xcludesList = f.getChildrenNamed("exclude"); String[] excludes = null; xclude = null; if (xcludesList.size() > 0) { excludes = new String[xcludesList.size()]; for (int j = 0; j < xcludesList.size(); j++) { xclude = (XMLElement) xcludesList.get(j); excludes[j] = requireAttribute(xclude, "name"); } } int override = getOverrideValue (f); String targetdir_attr = requireAttribute(f, "targetdir"); List osList = OsConstraint.getOsList (f); // TODO: unverified try { addFileSet(path, includes, excludes, targetdir_attr, osList, pack.packFiles, casesensitive, override); } catch (CompilerException x) { parseError(f, x.getMessage(), x); } } // get the updatechecks list // We get the fileset list iter = el.getChildrenNamed("updatecheck").iterator(); while (iter.hasNext()) { XMLElement f = (XMLElement) iter.next(); String casesensitive = f.getAttribute("casesensitive"); // get includes and excludes ArrayList includesList = new ArrayList (); Vector includesElementList = f.getChildrenNamed("include"); if (includesElementList != null) { for (Iterator include_it = includesElementList.iterator(); include_it.hasNext();) { XMLElement inc_el = (XMLElement)include_it.next(); String name = inc_el.getAttribute("name"); if (name != null) { includesList.add (name); } else { parseError(inc_el, "missing \"name\" attribute for <include> in <updatecheck>"); } } } ArrayList excludesList = new ArrayList (); Vector excludesElementList = f.getChildrenNamed("exclude"); if (excludesElementList != null) { for (Iterator exclude_it = excludesElementList.iterator(); exclude_it.hasNext();) { XMLElement excl_el = (XMLElement)exclude_it.next(); String name = excl_el.getAttribute("name"); if (name != null) { excludesList.add (name); } else { parseError(excl_el, "missing \"name\" attribute for <exclude> in <updatecheck>"); } } } pack.updatechecks.add (new UpdateCheck (includesList, excludesList, casesensitive)); } // We add the pack packs.add(pack); } if (packs.isEmpty()) parseError (root, "<packs> requires a <pack>"); // We return the ArrayList return packs; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

List osList = OsConstraint.getOsList (xmlPanel); Panel panel = new Panel(); panel.osConstraints = osList; panel.className = xmlPanel.getAttribute("classname");

List osList = OsConstraint.getOsList(xmlPanel); Panel panel = new Panel(); panel.osConstraints = osList; panel.className = xmlPanel.getAttribute("classname");

protected ArrayList getPanels(XMLElement data) throws CompilerException { // Initialisation ArrayList panels = new ArrayList(); XMLElement root = requireChildNamed(data, "panels"); // We process each langpack markup Iterator iter = root.getChildrenNamed("panel").iterator(); while (iter.hasNext()) { XMLElement xmlPanel = (XMLElement) iter.next(); List osList = OsConstraint.getOsList (xmlPanel); Panel panel = new Panel(); panel.osConstraints = osList; panel.className = xmlPanel.getAttribute("classname"); panels.add(panel); } if (panels.isEmpty()) parseError (root, "<panels> requires a <panel>"); // We return the ArrayList return panels; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

parseError (root, "<panels> requires a <panel>");

parseError(root, "<panels> requires a <panel>");

protected ArrayList getPanels(XMLElement data) throws CompilerException { // Initialisation ArrayList panels = new ArrayList(); XMLElement root = requireChildNamed(data, "panels"); // We process each langpack markup Iterator iter = root.getChildrenNamed("panel").iterator(); while (iter.hasNext()) { XMLElement xmlPanel = (XMLElement) iter.next(); List osList = OsConstraint.getOsList (xmlPanel); Panel panel = new Panel(); panel.osConstraints = osList; panel.className = xmlPanel.getAttribute("classname"); panels.add(panel); } if (panels.isEmpty()) parseError (root, "<panels> requires a <panel>"); // We return the ArrayList return panels; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if (root == null) return resources;

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

if (! src.isAbsolute())

if (!src.isAbsolute())

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding")));

resources.add( new Resource( requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding")));

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

parseError (root, "<resources> requires a <res>");

parseError(root, "<resources> requires a <res>");

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar");

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar";

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

uninst_is = new FileInputStream (uninst); } catch (IOException x)

uninst_is = new FileInputStream(uninst); } catch (IOException x)

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString());

throw new RuntimeException( "The uninstaller (" + uninst + ") seems to be missing: " + x.toString());

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

protected ArrayList getResources(XMLElement data) throws CompilerException { // Initialisation ArrayList resources = new ArrayList(); XMLElement root = data.getFirstChildNamed("resources"); if (root == null) return resources; // We process each res markup Iterator iter = root.getChildrenNamed("res").iterator(); while (iter.hasNext()) { XMLElement res = (XMLElement) iter.next(); // Do not prepend basedir if src is already an absolute path File src = new File(requireAttribute(res, "src")); if (! src.isAbsolute()) src = new File(basedir, src.getPath()); resources.add(new Resource(requireAttribute(res, "id"), src.getPath(), validateYesNoAttribute(res, "parse", NO), res.getAttribute("type"), res.getAttribute("encoding"))); } if (resources.isEmpty()) parseError (root, "<resources> requires a <res>"); // Uninstaller must be added as a resource for standalone compiler InputStream uninst_is = getClass().getResourceAsStream("/lib/uninstaller.jar"); if (uninst_is == null) { String uninst = Compiler.IZPACK_HOME + "lib" + File.separator + "uninstaller.jar"; try { uninst_is = new FileInputStream (uninst); } catch (IOException x) { // it's a runtime exception if this can't be found throw new RuntimeException ("The uninstaller ("+uninst+") seems to be missing: "+x.toString()); } } resources.add(new Resource("IzPack.uninstaller", uninst_is)); // We return the ArrayList return resources; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

this.varMap = new VariableValueMapImpl ();

this.varMap = new VariableValueMapImpl();

protected Properties getVariables(XMLElement data) throws Exception { this.varMap = new VariableValueMapImpl (); Properties retVal = null; // We get the varible list XMLElement root = data.getFirstChildNamed("variables"); if (root == null) return retVal; retVal = new Properties(); Iterator iter = root.getChildrenNamed("variable").iterator(); while (iter.hasNext()) { XMLElement var = (XMLElement) iter.next(); retVal.setProperty(requireAttribute(var, "name"), requireAttribute(var, "value")); varMap.setVariable(requireAttribute(var, "name"), requireAttribute(var, "value")); } return retVal; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

retVal.setProperty(requireAttribute(var, "name"), requireAttribute(var, "value")); varMap.setVariable(requireAttribute(var, "name"), requireAttribute(var, "value"));

retVal.setProperty( requireAttribute(var, "name"), requireAttribute(var, "value")); varMap.setVariable( requireAttribute(var, "name"), requireAttribute(var, "value"));

protected Properties getVariables(XMLElement data) throws Exception { this.varMap = new VariableValueMapImpl (); Properties retVal = null; // We get the varible list XMLElement root = data.getFirstChildNamed("variables"); if (root == null) return retVal; retVal = new Properties(); Iterator iter = root.getChildrenNamed("variable").iterator(); while (iter.hasNext()) { XMLElement var = (XMLElement) iter.next(); retVal.setProperty(requireAttribute(var, "name"), requireAttribute(var, "value")); varMap.setVariable(requireAttribute(var, "name"), requireAttribute(var, "value")); } return retVal; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

} catch (Exception x)

protected XMLElement getXMLTree() throws CompilerException, IOException { // Initialises the parser StdXMLParser parser = new StdXMLParser(); parser.setBuilder(new StdXMLBuilder()); parser.setReader(new StdXMLReader(new FileInputStream(filename))); parser.setValidator(new NonValidator()); // We get it XMLElement data = null; try { data = (XMLElement) parser.parse(); } catch (Exception x) { throw new CompilerException("Error parsing installation file", x); } // We check it if (!"installation".equalsIgnoreCase(data.getName())) parseError(data, "this is not an IzPack XML installation file"); if (!requireAttribute(data, "version").equalsIgnoreCase(VERSION)) parseError(data, "the file version is different from the compiler version"); // We finally return the tree return data; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

parseError(data, "the file version is different from the compiler version");

parseError( data, "the file version is different from the compiler version");

protected XMLElement getXMLTree() throws CompilerException, IOException { // Initialises the parser StdXMLParser parser = new StdXMLParser(); parser.setBuilder(new StdXMLBuilder()); parser.setReader(new StdXMLReader(new FileInputStream(filename))); parser.setValidator(new NonValidator()); // We get it XMLElement data = null; try { data = (XMLElement) parser.parse(); } catch (Exception x) { throw new CompilerException("Error parsing installation file", x); } // We check it if (!"installation".equalsIgnoreCase(data.getName())) parseError(data, "this is not an IzPack XML installation file"); if (!requireAttribute(data, "version").equalsIgnoreCase(VERSION)) parseError(data, "the file version is different from the compiler version"); // We finally return the tree return data; }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public static void main(String[] args) { // Outputs some informations System.out.println(""); System.out.println(".:: IzPack - Version " + IZPACK_VERSION + " ::."); System.out.println(""); System.out.println("< compiler specifications version : " + VERSION + " >"); System.out.println(""); System.out.println("- Copyright (C) 2001-2003 Julien Ponge"); System.out.println("- Visit http://www.izforge.com/ for the latests releases"); System.out.println("- Released under the terms of the GNU GPL either version 2"); System.out.println(" of the licence, or any later version."); System.out.println(""); // exit code 1 means: error int exitCode = 1; // We analyse the command line parameters try { // Our arguments String filename; String base = "."; String kind = "standard"; String output; // First check int nArgs = args.length; if (nArgs < 3) throw new Exception("no arguments given"); // We get the IzPack home directory int stdArgsIndex; if (args[0].equalsIgnoreCase("-HOME")) { stdArgsIndex = 2; IZPACK_HOME = args[1]; } else stdArgsIndex = 0; if (!IZPACK_HOME.endsWith(File.separator)) IZPACK_HOME = IZPACK_HOME + File.separator; // The users wants to know the command line parameters if (args[stdArgsIndex].equalsIgnoreCase("-?")) { System.out.println("-> Command line parameters are : (xml file) [args]"); System.out.println(" (xml file): the xml file describing the installation"); System.out.println(" -b (base) : indicates the base path that the compiler will use for filenames"); System.out.println(" default is the current path"); System.out.println(" -k (kind) : indicates the kind of installer to generate"); System.out.println(" default is standard"); System.out.println(" -o (out) : indicates the output file name"); System.out.println(" default is the xml file name\n"); System.out.println(" When using vm option -DSTACKTRACE=true there is all kind of debug info "); System.out.println(""); } else {// We can parse the other parameters & try to compile the installation // We get the input file name and we initialize the output file name filename = args[stdArgsIndex]; output = filename.substring(0, filename.length() - 3) + "jar"; // We parse the other ones int pos = stdArgsIndex + 1; while (pos < nArgs) if ((args[pos].startsWith("-")) && (args[pos].length() == 2)) { switch (args[pos].toLowerCase().charAt(1)) { case 'b': if ((pos + 1) < nArgs) { pos++; base = args[pos]; } else throw new Exception("base argument missing"); break; case 'k': if ((pos + 1) < nArgs) { pos++; kind = args[pos]; } else throw new Exception("kind argument missing"); break; case 'o': if ((pos + 1) < nArgs) { pos++; output = args[pos]; } else throw new Exception("output argument missing"); break; default: throw new Exception("unknown argument"); } pos++; } else throw new Exception("bad argument"); // Outputs what we are going to do System.out.println("-> Processing : " + filename); System.out.println("-> Output : " + output); System.out.println("-> Base path : " + base); System.out.println("-> Kind : " + kind); System.out.println(""); // Calls the compiler Compiler compiler = new Compiler(filename, base, kind, output); CmdlinePackagerListener listener = new CmdlinePackagerListener(); compiler.setPackagerListener(listener); compiler.compile(); // Waits while (compiler.isAlive()) Thread.sleep(100); if (compiler.wasSuccessful()) exitCode = 0; System.out.println("Build time: "+new Date()); } } catch (Exception err) { // Something bad has happened System.err.println("-> Fatal error :"); System.err.println(" " + err.getMessage()); err.printStackTrace(); System.err.println(""); System.err.println("(tip : use -? to get the commmand line parameters)"); } // Closes the JVM System.exit(exitCode); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java

public static void main(String[] args) { // Outputs some informations System.out.println(""); System.out.println(".:: IzPack - Version " + IZPACK_VERSION + " ::."); System.out.println(""); System.out.println("< compiler specifications version : " + VERSION + " >"); System.out.println(""); System.out.println("- Copyright (C) 2001-2003 Julien Ponge"); System.out.println("- Visit http://www.izforge.com/ for the latests releases"); System.out.println("- Released under the terms of the GNU GPL either version 2"); System.out.println(" of the licence, or any later version."); System.out.println(""); // exit code 1 means: error int exitCode = 1; // We analyse the command line parameters try { // Our arguments String filename; String base = "."; String kind = "standard"; String output; // First check int nArgs = args.length; if (nArgs < 3) throw new Exception("no arguments given"); // We get the IzPack home directory int stdArgsIndex; if (args[0].equalsIgnoreCase("-HOME")) { stdArgsIndex = 2; IZPACK_HOME = args[1]; } else stdArgsIndex = 0; if (!IZPACK_HOME.endsWith(File.separator)) IZPACK_HOME = IZPACK_HOME + File.separator; // The users wants to know the command line parameters if (args[stdArgsIndex].equalsIgnoreCase("-?")) { System.out.println("-> Command line parameters are : (xml file) [args]"); System.out.println(" (xml file): the xml file describing the installation"); System.out.println(" -b (base) : indicates the base path that the compiler will use for filenames"); System.out.println(" default is the current path"); System.out.println(" -k (kind) : indicates the kind of installer to generate"); System.out.println(" default is standard"); System.out.println(" -o (out) : indicates the output file name"); System.out.println(" default is the xml file name\n"); System.out.println(" When using vm option -DSTACKTRACE=true there is all kind of debug info "); System.out.println(""); } else {// We can parse the other parameters & try to compile the installation // We get the input file name and we initialize the output file name filename = args[stdArgsIndex]; output = filename.substring(0, filename.length() - 3) + "jar"; // We parse the other ones int pos = stdArgsIndex + 1; while (pos < nArgs) if ((args[pos].startsWith("-")) && (args[pos].length() == 2)) { switch (args[pos].toLowerCase().charAt(1)) { case 'b': if ((pos + 1) < nArgs) { pos++; base = args[pos]; } else throw new Exception("base argument missing"); break; case 'k': if ((pos + 1) < nArgs) { pos++; kind = args[pos]; } else throw new Exception("kind argument missing"); break; case 'o': if ((pos + 1) < nArgs) { pos++; output = args[pos]; } else throw new Exception("output argument missing"); break; default: throw new Exception("unknown argument"); } pos++; } else throw new Exception("bad argument"); // Outputs what we are going to do System.out.println("-> Processing : " + filename); System.out.println("-> Output : " + output); System.out.println("-> Base path : " + base); System.out.println("-> Kind : " + kind); System.out.println(""); // Calls the compiler Compiler compiler = new Compiler(filename, base, kind, output); CmdlinePackagerListener listener = new CmdlinePackagerListener(); compiler.setPackagerListener(listener); compiler.compile(); // Waits while (compiler.isAlive()) Thread.sleep(100); if (compiler.wasSuccessful()) exitCode = 0; System.out.println("Build time: "+new Date()); } } catch (Exception err) { // Something bad has happened System.err.println("-> Fatal error :"); System.err.println(" " + err.getMessage()); err.printStackTrace(); System.err.println(""); System.err.println("(tip : use -? to get the commmand line parameters)"); } // Closes the JVM System.exit(exitCode); }

54145 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54145/6e8ab3930a21f787bcd0f3cf0b9937f9d50c80c0/Compiler.java/buggy/src/lib/com/izforge/izpack/compiler/Compiler.java