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coconut_python2010

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rem stringlengths 1 322k	add stringlengths 0 2.05M	context stringlengths 4 228k	meta stringlengths 156 215
print "e.g. \"( true & false \| ( true & !true ) )\""	print "e.g. \"( true & false \| ( true & ! true ) )\""	def infix_to_prefix(expr): """converts the infix expression to prefix using the shunting yard algorithm""" ops = [] results = [] for token in tokenize(expr): #print ops, results if is_op(token): #If the token is an operator, o1, then: #while there is an operator token, o2, at the top of the stack, and #either o1 is left-associative and its precedence is less than or equal to that of o2, #or o1 is right-associative and its precedence is less than that of o2, #pop o2 off the stack, onto the output queue; #push o1 onto the stack. while len(ops) > 0 and is_op(ops[-1]) and \ ( (associativity(token) == 'left' and precedence(token) <= ops[-1]) \ or (associativity(token) == 'right' and precedence(token) < ops[-1]) ): results.append(ops.pop()) ops.append(token) #If the token is a left parenthesis, then push it onto the stack. elif is_left_paran(token): ops.append(token) #If the token is a right parenthesis: elif is_right_paran(token): #Until the token at the top of the stack is a left parenthesis, pop operators off the stack onto the output queue. while len(ops) > 0 and not is_left_paran(ops[-1]): results.append(ops.pop()) #Pop the left parenthesis from the stack, but not onto the output queue. #If the stack runs out without finding a left parenthesis, then there are mismatched parentheses. if len(ops) == 0: print "error: mismatched parentheses" exit() if is_left_paran(ops[-1]): ops.pop() else: #If the token is a number, then add it to the output queue. results.append(token) #When there are no more tokens to read: #While there are still operator tokens in the stack: while len(ops) > 0: #If the operator token on the top of the stack is a parenthesis, then there are mismatched parentheses. if is_right_paran(ops[-1]) or is_left_paran(ops[-1]): print "error: mismatched parentheses" exit() #Pop the operator onto the output queue. results.append(ops.pop()) return results	e767b12033e64b5042fe38b01fa3dd7f6b9765d9 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/14576/e767b12033e64b5042fe38b01fa3dd7f6b9765d9/shuntingyard.py
v = obj.Schema().getField(field).get(obj, mimetype="text/plain")	v = obj.Schema().getField(field).getRaw(obj)	def get(self, obj, field, context=None): """ """ v = obj.Schema().getField(field).get(obj, mimetype="text/plain") return v	17ab13941f03c72a692c09805275c64163d96d17 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/17ab13941f03c72a692c09805275c64163d96d17/base.py
f = str(f.data) full_path = os.path.join(parent_path, filename) try: full_path = full_path.encode('ascii') except: try: full_path = full_path.decode('utf-8').encode('ascii') except: pass zip.writestr(full_path, f)	fdata = str(f.data) full_path = os.path.join(parent_path, zip_filename) zip.writestr(full_path, fdata)	def get(self, obj, field, context=None, zip=None, parent_path=''): """ """ f = obj.Schema().getField(field).get(obj) if not f : return '' else: filename = f.filename if zip is not None: #logger.error(obj.Schema().getField(field).getType()) if obj.Schema().getField(field).getType() in \ ("plone.app.blob.subtypes.file.ExtensionBlobField", "Products.Archetypes.Field.FileField", 'Products.AttachmentField.AttachmentField.AttachmentField', "Products.Archetypes.Field.ImageField"):	40041ba04503cafee99b4c2bb76a7457a842b91a /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/40041ba04503cafee99b4c2bb76a7457a842b91a/file.py
obj = getattr(container.aq_explicit, id, None) if obj is None:	oids = container.objectIds() if not id in oids:	def importObject(self, row, specific_fields, type, conflict_winner, export_date, wf_transition, zip, encoding='utf-8', ignore_content_errors=False, plain_format=False): """ """ modified = False is_new_object = False protected = True parent_path = row[0] id = row[1] type_class = row[2] if parent_path == "": container = self.context else: try: container = self.context.unrestrictedTraverse(parent_path) except: raise csvreplicataNonExistentContainer, \ "Non existent container %s " % parent_path	46dc04825b3abad9211bd86f96a3401a73c44f6b /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/46dc04825b3abad9211bd86f96a3401a73c44f6b/replicator.py
obj = getattr(container.aq_explicit, id)		def importObject(self, row, specific_fields, type, conflict_winner, export_date, wf_transition, zip, encoding='utf-8', ignore_content_errors=False, plain_format=False): """ """ modified = False is_new_object = False protected = True parent_path = row[0] id = row[1] type_class = row[2] if parent_path == "": container = self.context else: try: container = self.context.unrestrictedTraverse(parent_path) except: raise csvreplicataNonExistentContainer, \ "Non existent container %s " % parent_path	46dc04825b3abad9211bd86f96a3401a73c44f6b /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/46dc04825b3abad9211bd86f96a3401a73c44f6b/replicator.py
		def importObject(self, row, specific_fields, type, conflict_winner, export_date, wf_transition, zip, encoding='utf-8', ignore_content_errors=False, plain_format=False): """ """ modified = False is_new_object = False protected = True parent_path = row[0] id = row[1] type_class = row[2] if parent_path == "": container = self.context else: try: container = self.context.unrestrictedTraverse(parent_path) except: raise csvreplicataNonExistentContainer, \ "Non existent container %s " % parent_path	7b3f44a7192a2b3d019b344d69aa6f88161972ce /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/7b3f44a7192a2b3d019b344d69aa6f88161972ce/replicator.py
else:	obj = getattr(container.aq_explicit, id, None) if not is_new_object:	def importObject(self, row, specific_fields, type, conflict_winner, export_date, wf_transition, zip, encoding='utf-8', ignore_content_errors=False, plain_format=False): """ """ modified = False is_new_object = False protected = True parent_path = row[0] id = row[1] type_class = row[2] if parent_path == "": container = self.context else: try: container = self.context.unrestrictedTraverse(parent_path) except: raise csvreplicataNonExistentContainer, \ "Non existent container %s " % parent_path	7b3f44a7192a2b3d019b344d69aa6f88161972ce /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/7b3f44a7192a2b3d019b344d69aa6f88161972ce/replicator.py
obj = getattr(container.aq_explicit, id, None)		def importObject(self, row, specific_fields, type, conflict_winner, export_date, wf_transition, zip, encoding='utf-8', ignore_content_errors=False, plain_format=False): """ """ modified = False is_new_object = False protected = True parent_path = row[0] id = row[1] type_class = row[2] if parent_path == "": container = self.context else: try: container = self.context.unrestrictedTraverse(parent_path) except: raise csvreplicataNonExistentContainer, \ "Non existent container %s " % parent_path	7b3f44a7192a2b3d019b344d69aa6f88161972ce /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/7b3f44a7192a2b3d019b344d69aa6f88161972ce/replicator.py
zip.writestr(os.path.join(parent_path, filename), f)	full_path = os.path.join(parent_path, filename) try: full_path = full_path.encode('ascii') except: try: full_path = full_path.decode('utf-8').encode('ascii') except: pass zip.writestr(full_path, f)	def get(self, obj, field, context=None, zip=None, parent_path=''): """ """ f = obj.Schema().getField(field).get(obj) if not f : return '' else: filename = f.filename if zip is not None: #logger.error(obj.Schema().getField(field).getType()) if obj.Schema().getField(field).getType() in \ ("plone.app.blob.subtypes.file.ExtensionBlobField", "Products.Archetypes.Field.FileField", 'Products.AttachmentField.AttachmentField.AttachmentField', "Products.Archetypes.Field.ImageField"):	7405b193fcff1eee7ce5c52a04579d29315bcb33 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11226/7405b193fcff1eee7ce5c52a04579d29315bcb33/file.py
query = """INSERT INTO cmtSUBSCRIPTION (id_bibrec, id_user, creation_time)	query = """INSERT INTO cmtSUBSCRIPTION (id_bibrec, id_user, creation_time)	def subscribe_user_to_discussion(recID, uid): """ Subscribe a user to a discussion, so the she receives by emails all new new comments for this record. @param recID: record ID corresponding to the discussion we want to subscribe the user @param uid: user id """ query = """INSERT INTO cmtSUBSCRIPTION (id_bibrec, id_user, creation_time) VALUES (%s, %s, %s)""" params = (recID, uid, convert_datestruct_to_datetext(time.localtime())) try: res = run_sql(query, params) except: return 0 return 1	0a1e261095ef1900914b1aa5807b70e51080d1f1 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/3302/0a1e261095ef1900914b1aa5807b70e51080d1f1/webcomment.py
res = run_sql(query, params)	run_sql(query, params)	def subscribe_user_to_discussion(recID, uid): """ Subscribe a user to a discussion, so the she receives by emails all new new comments for this record. @param recID: record ID corresponding to the discussion we want to subscribe the user @param uid: user id """ query = """INSERT INTO cmtSUBSCRIPTION (id_bibrec, id_user, creation_time) VALUES (%s, %s, %s)""" params = (recID, uid, convert_datestruct_to_datetext(time.localtime())) try: res = run_sql(query, params) except: return 0 return 1	0a1e261095ef1900914b1aa5807b70e51080d1f1 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/3302/0a1e261095ef1900914b1aa5807b70e51080d1f1/webcomment.py
		def calculate_start_date(display_since): """ Private function Returns the datetime of display_since argument in MYSQL datetime format calculated according to the local time. @param display_since: = all= no filtering nd = n days ago nw = n weeks ago nm = n months ago ny = n years ago where n is a single digit number @return: string of wanted datetime. If 'all' given as argument, will return datetext_default datetext_default is defined in miscutils/lib/dateutils and equals 0000-00-00 00:00:00 => MySQL format If bad arguement given, will return datetext_default """ time_types = {'d':0, 'w':0, 'm':0, 'y':0} today = datetime.today() try: nb = int(display_since[:-1]) except: return datetext_default if display_since in [None, 'all']: return datetext_default if str(display_since[-1]) in time_types: time_type = str(display_since[-1]) else: return datetext_default # year if time_type == 'y': if (int(display_since[:-1]) > today.year - 1) or (int(display_since[:-1]) < 1): # 1 < nb years < 2008 return datetext_default else: final_nb_year = today.year - nb yesterday = today.replace(year=final_nb_year) # month elif time_type == 'm': # to convert nb of monthes in years nb_year = nb / 12 # nb_year = number of year to substract nb = nb % 12 if nb > today.month-1: # ex: july(07)-9 monthes = -1year -3monthes nb_year += 1 nb_month = 12 - (today.month % nb) else: nb_month = today.month - nb final_nb_year = today.year - nb_year # final_nb_year = number of year to print yesterday = today.replace(year=final_nb_year, month=nb_month) # week elif time_type == 'w': delta = timedelta(weeks=nb) yesterday = today - delta # day elif time_type == 'd': delta = timedelta(days=nb) yesterday = today - delta return yesterday.strftime("%Y-%m-%d %H:%M:%S")	b3331e5a9c1da552c6ace8d0804aa3e4e7916f01 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/3302/b3331e5a9c1da552c6ace8d0804aa3e4e7916f01/webcomment.py
if nb > today.month-1:	if nb > today.month-1:	def calculate_start_date(display_since): """ Private function Returns the datetime of display_since argument in MYSQL datetime format calculated according to the local time. @param display_since: = all= no filtering nd = n days ago nw = n weeks ago nm = n months ago ny = n years ago where n is a single digit number @return: string of wanted datetime. If 'all' given as argument, will return datetext_default datetext_default is defined in miscutils/lib/dateutils and equals 0000-00-00 00:00:00 => MySQL format If bad arguement given, will return datetext_default """ time_types = {'d':0, 'w':0, 'm':0, 'y':0} today = datetime.today() try: nb = int(display_since[:-1]) except: return datetext_default if display_since in [None, 'all']: return datetext_default if str(display_since[-1]) in time_types: time_type = str(display_since[-1]) else: return datetext_default # year if time_type == 'y': if (int(display_since[:-1]) > today.year - 1) or (int(display_since[:-1]) < 1): # 1 < nb years < 2008 return datetext_default else: final_nb_year = today.year - nb yesterday = today.replace(year=final_nb_year) # month elif time_type == 'm': # to convert nb of monthes in years nb_year = nb / 12 # nb_year = number of year to substract nb = nb % 12 if nb > today.month-1: # ex: july(07)-9 monthes = -1year -3monthes nb_year += 1 nb_month = 12 - (today.month % nb) else: nb_month = today.month - nb final_nb_year = today.year - nb_year # final_nb_year = number of year to print yesterday = today.replace(year=final_nb_year, month=nb_month) # week elif time_type == 'w': delta = timedelta(weeks=nb) yesterday = today - delta # day elif time_type == 'd': delta = timedelta(days=nb) yesterday = today - delta return yesterday.strftime("%Y-%m-%d %H:%M:%S")	b3331e5a9c1da552c6ace8d0804aa3e4e7916f01 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/3302/b3331e5a9c1da552c6ace8d0804aa3e4e7916f01/webcomment.py
d = dict(zip(s, [1234]*len(s))) self.assertEqual(rencode.loads(rencode.dumps(d)), d)	d = dict(zip(s, ["foo"120]len(s))) d2 = {"foo": d, "bar": d, "baz": d} self.assertEqual(rencode.loads(rencode.dumps(d2)), d2)	def test_decode_dict(self): s = "abcdefghijklmnopqrstuvwxyz1234567890" d = dict(zip(s, [1234]*len(s))) self.assertEqual(rencode.loads(rencode.dumps(d)), d)	01ec9f169ee1736935a252f0b029cdaf51bb1dba /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/5961/01ec9f169ee1736935a252f0b029cdaf51bb1dba/test_rencode.py
log.info( "Instance '%s' found alive." % reservation.instances[0].id )	log.info( "Instance '%s' found alive. Restarting instance so it can register with the master." % reservation.instances[0].id ) ec2_conn.reboot_instances([reservation.instances[0].id])	def get_worker_instances( self ): instances = [] if self.app.TESTFLAG is True: # for i in range(5): # instance = Instance( self.app, inst=None, m_state="Pending" ) # instance.id = "WorkerInstance" # instances.append(instance) return instances log.debug("Trying to discover any worker instances associated with this cluster...") filters = {'tag:clusterName': self.app.ud['cluster_name'], 'tag:role': 'worker'} try: ec2_conn = self.app.cloud_interface.get_ec2_connection() reservations = ec2_conn.get_all_instances(filters=filters) for reservation in reservations: if reservation.instances[0].state != 'terminated' and reservation.instances[0].state != 'shutting-down': i = Instance( self.app, inst=reservation.instances[0], m_state=reservation.instances[0].state ) instances.append( i ) log.info( "Instance '%s' found alive." % reservation.instances[0].id ) except EC2ResponseError, e: log.debug( "Error checking for live instances: %s" % e ) return instances	d943af084217bc17559783cb9d670cf3afc6a237 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/d943af084217bc17559783cb9d670cf3afc6a237/master.py
log.info( "Setting up Galaxy" )	log.info( "Setting up Galaxy application" )	def manage_galaxy( self, to_be_started=True ): if self.app.TESTFLAG is True: log.debug( "Attempted to manage Galaxy, but TESTFLAG is set." ) return os.putenv( "GALAXY_HOME", self.galaxy_home ) os.putenv( "TEMP", '/mnt/galaxyData/tmp' ) if to_be_started: self.status() if not self.configured: log.info( "Setting up Galaxy" ) s3_conn = self.app.cloud_interface.get_s3_connection() if not os.path.exists(self.galaxy_home): log.error("Galaxy application directory '%s' does not exist! Aborting." % self.galaxy_home) log.debug("ls /mnt/: %s" % os.listdir('/mnt/')) return False	0b22386a42579657e2d68650b928181fb4bb4eee /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/0b22386a42579657e2d68650b928181fb4bb4eee/galaxy.py
	if os.path.exists('/mnt/galaxyIndices/locfiles/sam_fa_indices.loc'): shutil.copy('/mnt/galaxyIndices/locfiles/sam_fa_indices.loc', '/mnt/galaxyTools/galaxy-central/tool-data/sam_fa_indices.loc')	def manage_galaxy( self, to_be_started=True ): if self.app.TESTFLAG is True: log.debug( "Attempted to manage Galaxy, but TESTFLAG is set." ) return os.putenv( "GALAXY_HOME", self.galaxy_home ) os.putenv( "TEMP", '/mnt/galaxyData/tmp' ) if to_be_started: self.status() if not self.configured: log.info( "Setting up Galaxy" ) s3_conn = self.app.cloud_interface.get_s3_connection() if not os.path.exists(self.galaxy_home): log.error("Galaxy application directory '%s' does not exist! Aborting." % self.galaxy_home) log.debug("ls /mnt/: %s" % os.listdir('/mnt/')) return False	0b22386a42579657e2d68650b928181fb4bb4eee /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/0b22386a42579657e2d68650b928181fb4bb4eee/galaxy.py
try: misc.run("cd %s; sed 's/pyhton/python -ES/g' setup.sh > setup.sh.custom" % self.galaxy_home, "Failed to edit setup.sh", "Successfully adjusted setup.sh") shutil.copy( self.galaxy_home + '/setup.sh.custom', self.galaxy_home + '/setup.sh' ) os.chown( self.galaxy_home + '/setup.sh', pwd.getpwnam( "galaxy" )[2], grp.getgrnam( "galaxy" )[2] ) except Exception, e: log.error("Error adjusting setup.sh: %s" % e)		def manage_galaxy( self, to_be_started=True ): if self.app.TESTFLAG is True: log.debug( "Attempted to manage Galaxy, but TESTFLAG is set." ) return os.putenv( "GALAXY_HOME", self.galaxy_home ) os.putenv( "TEMP", '/mnt/galaxyData/tmp' ) if to_be_started: self.status() if not self.configured: log.info( "Setting up Galaxy" ) s3_conn = self.app.cloud_interface.get_s3_connection() if not os.path.exists(self.galaxy_home): log.error("Galaxy application directory '%s' does not exist! Aborting." % self.galaxy_home) log.debug("ls /mnt/: %s" % os.listdir('/mnt/')) return False	0b22386a42579657e2d68650b928181fb4bb4eee /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/0b22386a42579657e2d68650b928181fb4bb4eee/galaxy.py
with open('/etc/profile', 'a') as f: f.write('export PATH=/mnt/galaxyTools/tools/bin:/mnt/galaxyTools/tools/pkg/fastx_toolkit_0.0.13:/mnt/galaxyTools/tools/pkg/bowtie-0.12.5:/mnt/galaxyTools/tools/pkg/samtools-0.1.7_x86_64-linux:/mnt/galaxyTools/tools/pkg/gnuplot-4.4.0/bin:/opt/PostgreSQL/8.4/bin:$PATH\n') os.chown(self.galaxy_home + '/universe_wsgi.ini', pwd.getpwnam("galaxy")[2], grp.getgrnam("galaxy")[2])		def manage_galaxy( self, to_be_started=True ): if self.app.TESTFLAG is True: log.debug( "Attempted to manage Galaxy, but TESTFLAG is set." ) return os.putenv( "GALAXY_HOME", self.galaxy_home ) os.putenv( "TEMP", '/mnt/galaxyData/tmp' ) if to_be_started: self.status() if not self.configured: log.info( "Setting up Galaxy" ) s3_conn = self.app.cloud_interface.get_s3_connection() if not os.path.exists(self.galaxy_home): log.error("Galaxy application directory '%s' does not exist! Aborting." % self.galaxy_home) log.debug("ls /mnt/: %s" % os.listdir('/mnt/')) return False	0b22386a42579657e2d68650b928181fb4bb4eee /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/0b22386a42579657e2d68650b928181fb4bb4eee/galaxy.py
'snapshot' : {'progress' : str(self.app.manager.snapshot_progress), 'status' : str(self.app.manager.snapshot_status)},	'snapshot' : {'progress' : str(ss_progress), 'status' : str(ss_status)},	def instance_state_json(self, trans, no_json=False): g_s = self.app.manager.get_services('Galaxy') if g_s and g_s[0].state == service_states.RUNNING: dns = 'http://%s' % str( self.app.cloud_interface.get_self_public_ip() ) else: # dns = '<a href="http://%s" target="_blank">Access Galaxy</a>' % str( 'localhost:8080' ) dns = '#' ret_dict = {'instance_state':self.app.manager.get_instance_state(), 'cluster_status':self.app.manager.get_cluster_status(), 'dns':dns, 'instance_status':{'idle': str(len(self.app.manager.get_idle_instances())), 'available' : str(self.app.manager.get_num_available_workers()), 'requested' : str(len(self.app.manager.worker_instances))}, 'disk_usage':{'used':str(self.app.manager.disk_used), 'total':str(self.app.manager.disk_total), 'pct':str(self.app.manager.disk_pct)}, 'data_status':self.app.manager.get_data_status(), 'app_status':self.app.manager.get_app_status(), # 'services' : {'fs' : self.app.manager.fs_status_text(), # 'pg' : self.app.manager.pg_status_text(), # 'sge' : self.app.manager.sge_status_text(), # 'galaxy' : self.app.manager.galaxy_status_text()}, 'all_fs' : self.app.manager.all_fs_status_array(), 'snapshot' : {'progress' : str(self.app.manager.snapshot_progress), 'status' : str(self.app.manager.snapshot_status)}, 'autoscaling': {'use_autoscaling': bool(self.app.manager.get_services('Autoscale')), 'as_min': 'N/A' if not self.app.manager.get_services('Autoscale') else self.app.manager.get_services('Autoscale')[0].as_min, 'as_max': 'N/A' if not self.app.manager.get_services('Autoscale') else self.app.manager.get_services('Autoscale')[0].as_max} } if no_json: return ret_dict else: return to_json_string(ret_dict)	b092e742642def3940eb5e198e3e5499ba9b8cf5 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/b092e742642def3940eb5e198e3e5499ba9b8cf5/root.py
def update_galaxy(self, trans, repository="http://bitbucket.org/galaxy/cloudman"):	def update_galaxy(self, trans, repository="http://bitbucket.org/galaxy/galaxy-central"):	def update_galaxy(self, trans, repository="http://bitbucket.org/galaxy/cloudman"): log.debug("Updating Galaxy... Using repository %s" % repository) svcs = self.app.manager.get_services('Galaxy') for service in svcs: service.remove() misc.run('su galaxy -c "cd %s; hg pull %s --update"' % (paths.P_GALAXY_HOME, repository)) misc.run('su galaxy -c "cd %s; sh setup.sh; sh manage_db.sh upgrade"' % (paths.P_GALAXY_HOME)) for service in svcs: service.add()	78a047bc5efd72a9276af90a4f65e67acf0949a8 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/78a047bc5efd72a9276af90a4f65e67acf0949a8/root.py
misc.run('su galaxy -c "cd %s; hg pull %s --update"' % (paths.P_GALAXY_HOME, repository)) misc.run('su galaxy -c "cd %s; sh setup.sh; sh manage_db.sh upgrade"' % (paths.P_GALAXY_HOME))	cmd = '%s - galaxy -c "cd %s; hg --config ui.merge=internal:local pull %s --update"' % (paths.P_SU, paths.P_GALAXY_HOME, repository) retval = os.system(cmd) log.debug("Galaxy update cmd '%s'; return value %s" % (cmd, retval)) cmd = '%s - galaxy -c "cd %s; sh manage_db.sh upgrade"' % (paths.P_SU, paths.P_GALAXY_HOME) retval = os.system(cmd) log.debug("Galaxy DB update cmd '%s'; return value %s" % (cmd, retval))	def update_galaxy(self, trans, repository="http://bitbucket.org/galaxy/cloudman"): log.debug("Updating Galaxy... Using repository %s" % repository) svcs = self.app.manager.get_services('Galaxy') for service in svcs: service.remove() misc.run('su galaxy -c "cd %s; hg pull %s --update"' % (paths.P_GALAXY_HOME, repository)) misc.run('su galaxy -c "cd %s; sh setup.sh; sh manage_db.sh upgrade"' % (paths.P_GALAXY_HOME)) for service in svcs: service.add()	78a047bc5efd72a9276af90a4f65e67acf0949a8 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/78a047bc5efd72a9276af90a4f65e67acf0949a8/root.py
service.add()	service.start() log.debug("Done updating Galaxy")	def update_galaxy(self, trans, repository="http://bitbucket.org/galaxy/cloudman"): log.debug("Updating Galaxy... Using repository %s" % repository) svcs = self.app.manager.get_services('Galaxy') for service in svcs: service.remove() misc.run('su galaxy -c "cd %s; hg pull %s --update"' % (paths.P_GALAXY_HOME, repository)) misc.run('su galaxy -c "cd %s; sh setup.sh; sh manage_db.sh upgrade"' % (paths.P_GALAXY_HOME)) for service in svcs: service.add()	78a047bc5efd72a9276af90a4f65e67acf0949a8 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/78a047bc5efd72a9276af90a4f65e67acf0949a8/root.py
<input type="text" value="http://bitbucket.org/galaxy/cloudman" name="repository">	<input type="text" value="http://bitbucket.org/galaxy/galaxy-central" name="repository">	def admin(self, trans): return """ <ul> <li>This admin panel is only a very temporary way to control galaxy services. Use with caution.</li> <li><strong>Service Control</strong></li> <li><a href='manage_galaxy'>Start Galaxy</a></li> <li><a href='manage_galaxy?to_be_started=False'>Stop Galaxy</a></li> <form action="update_galaxy" method="get"> <input type="text" value="http://bitbucket.org/galaxy/cloudman" name="repository"> <input type="submit" value="Update Galaxy"> </form> <li><a href='manage_postgres'>Start Postgres</a></li> <li><a href='manage_postgres?to_be_started=False'>Start Postgres</a></li> <li><a href='manage_sge'>Start SGE</a></li> <li><a href='manage_sge?to_be_started=False'>Stop SGE</a></li> <li><strong>Emergency Tools -use with care.</strong></li> <li><a href='recover_monitor'>Recover monitor.</a></li> <li><a href='recover_monitor?force=True'>Recover monitor with Force.</a></li> <li><a href='add_instances?number_nodes=1'>Add one instance</a></li> <li><a href='remove_instances?number_nodes=1'>Remove one instance</a></li> <li><a href='remove_instances?number_nodes=1&force=True'>Remove one instance with Force.</a></li> <li><a href='cleanup'>Cleanup - shutdown all services/instances, keep volumes</a></li> <li><a href='kill_all'>Kill all - shutdown everything, disconnect/delete all.</a></li> </ul> """	78a047bc5efd72a9276af90a4f65e67acf0949a8 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/78a047bc5efd72a9276af90a4f65e67acf0949a8/root.py
worker_ud['password'] = self.app.ud['password']	if self.app.ud.has_key('password'): worker_ud['password'] = self.app.ud['password']	def add_instances( self, num_nodes, instance_type=''): num_nodes = int( num_nodes ) ec2_conn = self.app.cloud_interface.get_ec2_connection() log.info( "Adding %s instance(s)..." % num_nodes ) # Compose worker instance user data worker_ud = {} worker_ud['access_key'] = self.app.ud['access_key'] worker_ud['secret_key'] = self.app.ud['secret_key'] worker_ud['password'] = self.app.ud['password'] worker_ud['cluster_name'] = self.app.ud['cluster_name'] worker_ud['role'] = 'worker' worker_ud['master_ip'] = self.app.cloud_interface.get_self_private_ip() worker_ud_str = "\n".join(['%s: %s' % (key, value) for key, value in worker_ud.iteritems()]) #log.debug( "Worker user data: %s " % worker_ud ) reservation = None if instance_type == '': instance_type = self.app.cloud_interface.get_type() log.debug( "Using following command: ec2_conn.run_instances( image_id='%s', min_count=1, max_count='%s', key_name='%s', security_groups=['%s'], user_data=[%s], instance_type='%s', placement='%s' )" % ( self.app.cloud_interface.get_ami(), num_nodes, self.app.cloud_interface.get_key_pair_name(), ", ".join( self.app.cloud_interface.get_security_groups() ), worker_ud_str, instance_type, self.app.cloud_interface.get_zone() ) ) try: # log.debug( "Would be starting worker instance(s)..." ) reservation = ec2_conn.run_instances( image_id=self.app.cloud_interface.get_ami(), min_count=1, max_count=num_nodes, key_name=self.app.cloud_interface.get_key_pair_name(), security_groups=self.app.cloud_interface.get_security_groups(), user_data=worker_ud_str, instance_type=instance_type, placement=self.app.cloud_interface.get_zone() ) if reservation: for instance in reservation.instances: i = Instance( self.app, inst=instance, m_state=instance.state ) self.worker_instances.append( i ) # Save list of started instances into a file on S3 to be used in case of cluster restart self.save_worker_instance_IDs_to_S3( self.worker_instances ) except BotoServerError, e: log.error( "EC2 insufficient capacity error: %s" % str( e ) ) return False except EC2ResponseError, e: err = "EC2 response error when starting worker nodes: %s" % str( e ) log.error( err ) return False # Update cluster status # self.master_state = master_states.ERROR # self.console_monitor.last_state_change_time = dt.datetime.utcnow() # log.debug( "Changed state to '%s'" % self.master_state ) except Exception, ex: err = "Error when starting worker nodes: %s" % str( ex ) log.error( err ) return False # self.master_state = master_states.ERROR # self.console_monitor.last_state_change_time = dt.datetime.utcnow() # log.debug( "Changed state to '%s'" % self.master_state ) log.debug( "Started %s instance(s)" % num_nodes ) return True	b5a8fb4b17a65058e4bce4310dac3d156b9dafc6 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/b5a8fb4b17a65058e4bce4310dac3d156b9dafc6/master.py
self.app.manager.update_users_CM() return trans.fill_template('index.mako')	return to_json_string({'updated':self.app.manager.update_users_CM()})	def update_users_CM(self, trans): self.app.manager.update_users_CM() return trans.fill_template('index.mako')	157057b13f5380edd7fc3e58057f038ada42bdbd /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/157057b13f5380edd7fc3e58057f038ada42bdbd/root.py
CM_url = trans.app.config.get( "CM_url", "http://bitbucket.org/galaxy/cloudman/changesets/" )		def get_CM_url(self, trans): CM_url = trans.app.config.get( "CM_url", "http://bitbucket.org/galaxy/cloudman/changesets/" ) changesets = self.app.manager.check_for_new_version_of_CM() if changesets.has_key('default_CM_rev') and changesets.has_key('user_CM_rev'): try: num_changes = int(changesets['default_CM_rev']) - int(changesets['user_CM_rev']) CM_url += changesets['default_CM_rev'] + '/' + str(num_changes) except Exception, e: log.debug("Error calculating changeset range for CM 'What's new' link: %s" % e) return CM_url	f91170760a7e8b495377486bc187299e52c2b543 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/f91170760a7e8b495377486bc187299e52c2b543/root.py
return CM_url	return None	def get_CM_url(self, trans): CM_url = trans.app.config.get( "CM_url", "http://bitbucket.org/galaxy/cloudman/changesets/" ) changesets = self.app.manager.check_for_new_version_of_CM() if changesets.has_key('default_CM_rev') and changesets.has_key('user_CM_rev'): try: num_changes = int(changesets['default_CM_rev']) - int(changesets['user_CM_rev']) CM_url += changesets['default_CM_rev'] + '/' + str(num_changes) except Exception, e: log.debug("Error calculating changeset range for CM 'What's new' link: %s" % e) return CM_url	f91170760a7e8b495377486bc187299e52c2b543 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/f91170760a7e8b495377486bc187299e52c2b543/root.py
import time if time.gmtime().tm_sec < 20 or time.gmtime().tm_sec > 40: ss_status = "Working" ss_progress = (time.gmtime().tm_sec % 20) * 5 else: ss_progress = None ss_status = None		def instance_state_json(self, trans, no_json=False): g_s = self.app.manager.get_services('Galaxy') if g_s and g_s[0].state == service_states.RUNNING: dns = 'http://%s' % str( self.app.cloud_interface.get_self_public_ip() ) else: # dns = '<a href="http://%s" target="_blank">Access Galaxy</a>' % str( 'localhost:8080' ) dns = '#' # TEMP TEST FOR RESIZING import time if time.gmtime().tm_sec < 20 or time.gmtime().tm_sec > 40: ss_status = "Working" ss_progress = (time.gmtime().tm_sec % 20) * 5 else: ss_progress = None ss_status = None ret_dict = {'instance_state':self.app.manager.get_instance_state(), 'cluster_status':self.app.manager.get_cluster_status(), 'dns':dns, 'instance_status':{'idle': str(len(self.app.manager.get_idle_instances())), 'available' : str(self.app.manager.get_num_available_workers()), 'requested' : str(len(self.app.manager.worker_instances))}, 'disk_usage':{'used':str(self.app.manager.disk_used), 'total':str(self.app.manager.disk_total), 'pct':str(self.app.manager.disk_pct)}, 'data_status':self.app.manager.get_data_status(), 'app_status':self.app.manager.get_app_status(), # 'services' : {'fs' : self.app.manager.fs_status_text(), # 'pg' : self.app.manager.pg_status_text(), # 'sge' : self.app.manager.sge_status_text(), # 'galaxy' : self.app.manager.galaxy_status_text()}, 'all_fs' : self.app.manager.all_fs_status_array(), # 'snapshot' : {'progress' : str(self.app.manager.snapshot_progress), # 'status' : str(self.app.manager.snapshot_status)}, 'snapshot' : {'progress' : str(ss_progress), 'status' : str(ss_status)}, 'autoscaling': {'use_autoscaling': bool(self.app.manager.get_services('Autoscale')), 'as_min': 'N/A' if not self.app.manager.get_services('Autoscale') else self.app.manager.get_services('Autoscale')[0].as_min, 'as_max': 'N/A' if not self.app.manager.get_services('Autoscale') else self.app.manager.get_services('Autoscale')[0].as_max} } if no_json: return ret_dict else: return to_json_string(ret_dict)	ae4e0df8e2176479c03ed851987eb5a12a9836e1 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/ae4e0df8e2176479c03ed851987eb5a12a9836e1/root.py
'snapshot' : {'progress' : str(ss_progress), 'status' : str(ss_status)},	'snapshot' : {'progress' : str(self.app.manager.snapshot_progress), 'status' : str(self.app.manager.snapshot_status)},	def instance_state_json(self, trans, no_json=False): g_s = self.app.manager.get_services('Galaxy') if g_s and g_s[0].state == service_states.RUNNING: dns = 'http://%s' % str( self.app.cloud_interface.get_self_public_ip() ) else: # dns = '<a href="http://%s" target="_blank">Access Galaxy</a>' % str( 'localhost:8080' ) dns = '#' # TEMP TEST FOR RESIZING import time if time.gmtime().tm_sec < 20 or time.gmtime().tm_sec > 40: ss_status = "Working" ss_progress = (time.gmtime().tm_sec % 20) * 5 else: ss_progress = None ss_status = None ret_dict = {'instance_state':self.app.manager.get_instance_state(), 'cluster_status':self.app.manager.get_cluster_status(), 'dns':dns, 'instance_status':{'idle': str(len(self.app.manager.get_idle_instances())), 'available' : str(self.app.manager.get_num_available_workers()), 'requested' : str(len(self.app.manager.worker_instances))}, 'disk_usage':{'used':str(self.app.manager.disk_used), 'total':str(self.app.manager.disk_total), 'pct':str(self.app.manager.disk_pct)}, 'data_status':self.app.manager.get_data_status(), 'app_status':self.app.manager.get_app_status(), # 'services' : {'fs' : self.app.manager.fs_status_text(), # 'pg' : self.app.manager.pg_status_text(), # 'sge' : self.app.manager.sge_status_text(), # 'galaxy' : self.app.manager.galaxy_status_text()}, 'all_fs' : self.app.manager.all_fs_status_array(), # 'snapshot' : {'progress' : str(self.app.manager.snapshot_progress), # 'status' : str(self.app.manager.snapshot_status)}, 'snapshot' : {'progress' : str(ss_progress), 'status' : str(ss_status)}, 'autoscaling': {'use_autoscaling': bool(self.app.manager.get_services('Autoscale')), 'as_min': 'N/A' if not self.app.manager.get_services('Autoscale') else self.app.manager.get_services('Autoscale')[0].as_min, 'as_max': 'N/A' if not self.app.manager.get_services('Autoscale') else self.app.manager.get_services('Autoscale')[0].as_max} } if no_json: return ret_dict else: return to_json_string(ret_dict)	ae4e0df8e2176479c03ed851987eb5a12a9836e1 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/11241/ae4e0df8e2176479c03ed851987eb5a12a9836e1/root.py
self.reconnecting = False		def __init__(self, owner_bot, xmpp_room_jid, irc_room, irc_server, mode, say_level, irc_port=6667, irc_connection_interval=None, irc_charsets=None): """Create a new bridge.""" self.bot = owner_bot self.irc_server = irc_server self.irc_port = irc_port self.irc_room = irc_room.lower() self.irc_connection_interval = irc_connection_interval self.irc_charsets = irc_charsets self.irc_op = False self.xmpp_room_jid = xmpp_room_jid self.say_level = say_level self.participants = [] self.reconnecting = False if mode not in self.__class__.modes: raise Exception('[Error] "'+mode+'" is not a correct value for a bridge\'s "mode" attribute') self.mode = mode self.lock = threading.RLock() self.init2()	c452eafaa4502bd655de3d0dd9d7fef0daa19247 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/c452eafaa4502bd655de3d0dd9d7fef0daa19247/bridge.py
except ServerNotConnectedError:	except irclib.ServerNotConnectedError:	def _say_on_irc(self, message): try: self.irc_connection.privmsg(self.irc_room, message) except ServerNotConnectedError: bridges = self.bot.iter_bridges(irc_server=self.irc_server) self.bot.restart_bridges_delayed(bridges, 0, say_levels.error, 'Lost bot IRC connection', protocol='irc')	6d1b546fd869783fb1fb175db6562a88a674cc5c /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/6d1b546fd869783fb1fb175db6562a88a674cc5c/bridge.py
except ServerNotConnectedError: c = e.args[1]	except ServerNotConnectedError as e: if len(e.args) > 0: c = e.args[0] else: self.bot.error(say_levels.error, 'Unkonwn exception on IRC thread:\n'+str(e.args)) continue	def process_forever(self, timeout=0.2): """Run an infinite loop, processing data from connections.	3b8fce5d1026baa024494243f1b3178ac3c79c67 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/3b8fce5d1026baa024494243f1b3178ac3c79c67/irclib.py
self.irc_id = prefix if DEBUG: print "irc_id: %s" % (prefix)	if self.irc_id != prefix: self.irc_id = prefix if DEBUG: print "irc_id: %s" % (prefix)	def process_data(self): """[Internal]"""	29f0268dfee4fc0977650ea17c594b7a7db4c172 /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/29f0268dfee4fc0977650ea17c594b7a7db4c172/irclib.py
if command in ["nick", "welcome"]: self.logged_in = True self.real_nickname = arguments[0] if self.new_nickname != arguments[0]: if len(self.new_nickname) > len(arguments[0]): self._handle_event(Event('nicknametoolong', None, None, None)) else: self._handle_event(Event('erroneusnickname', None, None, None)) else: self._call_nick_callbacks(None) self.new_nickname = None		def process_data(self): """[Internal]"""	129d2ef4b8971c2d1bed3c6006a3b5ffcc9e52ab /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/129d2ef4b8971c2d1bed3c6006a3b5ffcc9e52ab/irclib.py
elif self.socket:	elif self.socket and hasattr(self.socket, 'recv'):	def process_data(self): """[Internal]"""	833c88a06c7ad5b6080ab3800aa7127dcbe98dda /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/833c88a06c7ad5b6080ab3800aa7127dcbe98dda/irclib.py
leave_message = 'kicked by '+nickname	leave_message = 'kicked by '+source_nickname	def _irc_event_handler(self, connection, event): """[Internal] Manage IRC events""" # Answer ping if event.eventtype() == 'ping': connection.pong(connection.get_server_name()) return # Events we always want to ignore if 'all' in event.eventtype() or 'motd' in event.eventtype() or event.eventtype() in ['nicknameinuse', 'nickcollision', 'erroneusnickname']: return if event.eventtype() in ['pong', 'privnotice', 'ctcp', 'nochanmodes', 'notexttosend', 'currenttopic', 'topicinfo', '328', 'pubnotice', '042', 'umode', 'welcome', 'yourhost', 'created', 'myinfo', 'featurelist', 'luserclient', 'luserop', 'luserchannels', 'luserme', 'n_local', 'n_global', 'endofnames', 'luserunknown', 'luserconns', 'inviteonlychan', 'bannedfromchan', 'channelisfull', 'badchannelkey', 'topic', 'noorigin']: self.error(1, 'ignoring IRC '+event.eventtype(), debug=True) return source_nickname = None if event.source() and '!' in event.source(): source_nickname = event.source().split('!')[0] # A string representation of the event event_str = '\nconnection='+connection.__str__()+'\neventtype='+event.eventtype()+'\nsource='+repr(event.source())+'\ntarget='+repr(event.target())+'\narguments='+repr(event.arguments()) debug_str = 'Received IRC event.'+event_str handled = False # Private message if event.eventtype() in ['privmsg', 'action']: if event.target() == self.nickname: # message is for the bot connection.privmsg(source_nickname, self.respond(event.arguments()[0])) return elif not irclib.is_channel(event.target()[0]): # search if the IRC user who sent the message is in one of the bridges for bridge in self.iter_bridges(irc_server=connection.server): try: from_ = bridge.get_participant(source_nickname) # he is, forward the message on XMPP if event.eventtype() == 'action': action = True else: action = False from_.say_on_xmpp_to(connection.nickname, event.arguments()[0], action=action) return except Bridge.NoSuchParticipantException: continue # he isn't, send an error connection.privmsg(source_nickname, 'XIB error: you cannot send a private message to an XMPP user if you are not in one of the chans he is in') # Connection errors if event.eventtype() in ['disconnect', 'kill', 'error']: if len(event.arguments()) > 0 and event.arguments()[0] == 'Connection reset by peer': self.error(2, debug_str, debug=True) else: self.error(say_levels.debug, debug_str, send_to_admins=True) return # Chan errors if event.eventtype() in ['cannotsendtochan', 'notonchannel']: self.error(2, debug_str, debug=True) bridge = self.get_bridge(irc_room=event.arguments()[0], irc_server=connection.server) if event.eventtype() == 'cannotsendtochan': if connection.nickname == self.nickname: bridge._join_irc_failed(event.eventtype()) else: p = bridge.get_participant(connection.nickname) p._close_irc_connection(event.eventtype()) p.irc_connection = event.eventtype() elif event.eventtype() == 'notonchannel': if connection.nickname == self.nickname: bridge.restart(message='Restarting bridge because we received the IRC event '+event.eventtype()) else: p = bridge.get_participant(connection.nickname) p.irc_connection.join(bridge.irc_room) return # Ignore events not received on bot connection if connection.nickname != self.nickname: self.error(1, 'ignoring IRC '+event.eventtype()+' not received on bridge connection', debug=True) return # Server events if event.eventtype() in ['quit', 'nick']: for bridge in self.iter_bridges(irc_server=connection.server): try: from_ = bridge.get_participant(source_nickname) except Bridge.NoSuchParticipantException: continue handled = True # Quit event if event.eventtype() == 'quit': if len(event.arguments()) > 0: leave_message = event.arguments()[0] else: leave_message = 'Left server.' bridge.remove_participant('irc', from_.nickname, leave_message) continue # Nickname change if event.eventtype() == 'nick': from_.change_nickname(event.target(), 'xmpp') continue if handled: return # Chan events if event.eventtype() in ['pubmsg', 'action', 'part', 'kick', 'mode', 'join']: if event.eventtype() in ['pubmsg', 'action', 'part', 'kick', 'join'] and not source_nickname: self.error(say_levels.debug, 'a source is needed for a '+event.eventtype()+' event'+event_str) return if event.eventtype() in ['kick', 'mode'] and len(event.arguments()) == 0: self.error(say_levels.debug, 'at least 1 argument is needed for a '+event.eventtype()+' event'+event_str) return chan = event.target().lower() bridge = self.get_bridge(irc_room=chan, irc_server=connection.server) from_ = None if source_nickname: try: from_ = bridge.get_participant(source_nickname) except Bridge.NoSuchParticipantException: pass # Join event if event.eventtype() == 'join': bridge.add_participant('irc', source_nickname) return # kick handling if event.eventtype() == 'kick': try: kicked = bridge.get_participant(event.arguments()[0]) except Bridge.NoSuchParticipantException: self.error(say_levels.debug, 'a participant that was not here has been kicked ? WTF ?'+event_str) return leave_message = 'kicked by '+nickname if len(event.arguments()) > 1: leave_message += ' with reason: '+event.arguments()[1] else: leave_message += ' (no reason was given)' log_message = '"'+kicked.nickname+'" has been '+leave_message self.error(say_levels.warning, log_message) if isinstance(kicked.irc_connection, irclib.ServerConnection): # an IRC duplicate of an XMPP user has been kicked, auto-rejoin kicked.irc_connection.join(bridge.irc_room) elif isinstance(kicked.xmpp_c, xmpp.client.Client): # an IRC user has been kicked, make its duplicate leave kicked.leave(m) else: # an IRC user with no duplicate on XMPP has been kicked, say it on XMPP bridge.say(say_levels.warning, log_message, on_irc=False) return # Part event if event.eventtype() == 'part': if not from_: self.error(say_levels.debug, 'a participant that wasn\'t here left:'+event_str) return if len(event.arguments()) > 0: leave_message = event.arguments()[0] else: leave_message = 'Left channel.' bridge.remove_participant('irc', from_.nickname, leave_message) return # Chan message if event.eventtype() in ['pubmsg', 'action']: message = event.arguments()[0] if event.eventtype() == 'action': action = True else: action = False if isinstance(from_, Participant): from_.say_on_xmpp(message, action=action) else: bridge.say_on_behalf(source_nickname, message, 'xmpp', action=action) return # Mode event if event.eventtype() == 'mode': if len(event.arguments()) == 1: # chan mode self.error(1, 'ignoring IRC mode "'+event.arguments()[0]+'" for chan "'+event.target()+'"', debug=True) elif len(event.arguments()) == 2: # participant mode if event.arguments()[1] != self.nickname or not 'o' in event.arguments()[0]: self.error(1, 'ignoring IRC mode "'+event.arguments()[0]+'" for "'+event.arguments()[1]+'" in chan "'+event.target()+'"', debug=True) return if re.search('\+[^\-]o', event.arguments()[0]): # bot is channel operator bridge.irc_op = True self.error(say_levels.notice, 'bot has IRC operator privileges in '+chan) elif re.search('\-[^\+]o', event.arguments()[0]): # bot lost channel operator privileges if bridge.irc_op: self.error(say_levels.notice, 'bot lost IRC operator privileges in '+chan, send_to_admins=True) bridge.irc_op = False else: # unknown mode self.error(say_levels.debug, 'unknown IRC "mode" event (has 3 arguments):'+event_str) return # Namreply event if event.eventtype() == 'namreply': bridge = self.get_bridge(irc_room=event.arguments()[1].lower(), irc_server=connection.server) for nickname in re.split('(?:^[&@\+%]?\|(?: [&@\+%]?)*)', event.arguments()[2].strip()): if nickname == '' or nickname == self.nickname: continue bridge.add_participant('irc', nickname) return # Unhandled events self.error(1, 'event not handled', debug=True) self._send_message_to_admins(say_levels.debug, 'The following IRC event was not handled:'+event_str)	5b31c83aeeeacecbc60b62e840741ce8f9d005cf /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/5b31c83aeeeacecbc60b62e840741ce8f9d005cf/bot.py
if not self.mode:	if self.stopped:	def _irc_nick_callback(self, error, arguments=None): if not error: if not self.mode: return self.irc_connection.join(self.irc_room, callback=self._irc_join_callback) else: self.mode = None self.say(say_levels.error, 'failed to connect to the IRC chan, leaving ...', on_irc=False) if error in ['nicknameinuse', 'nickcollision']: reason = '"'+self.bot.nickname+'" is already used or reserved on the IRC server' elif error == 'erroneusnickname': reason = '"'+self.bot.nickname+'" got "erroneusnickname"' elif error == 'nicknametoolong': reason = '"'+self.bot.nickname+'" got "nicknametoolong", limit seems to be '+str(len(self.irc_connection.real_nickname)) else: reason = error self._join_irc_failed(reason)	1c428761fad5529b2fa3940d261d3286f3d1fd2e /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/1c428761fad5529b2fa3940d261d3286f3d1fd2e/bridge.py
self.mode = None	self.stopped = True	def _irc_nick_callback(self, error, arguments=None): if not error: if not self.mode: return self.irc_connection.join(self.irc_room, callback=self._irc_join_callback) else: self.mode = None self.say(say_levels.error, 'failed to connect to the IRC chan, leaving ...', on_irc=False) if error in ['nicknameinuse', 'nickcollision']: reason = '"'+self.bot.nickname+'" is already used or reserved on the IRC server' elif error == 'erroneusnickname': reason = '"'+self.bot.nickname+'" got "erroneusnickname"' elif error == 'nicknametoolong': reason = '"'+self.bot.nickname+'" got "nicknametoolong", limit seems to be '+str(len(self.irc_connection.real_nickname)) else: reason = error self._join_irc_failed(reason)	1c428761fad5529b2fa3940d261d3286f3d1fd2e /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/1c428761fad5529b2fa3940d261d3286f3d1fd2e/bridge.py
if not self.mode:	if self.stopped:	def _xmpp_join_callback(self, errors): """Called by muc._xmpp_presence_handler""" if len(errors) == 0: self.reconnecting = False if not self.mode: return self.bot.error(3, 'succesfully connected on XMPP side of bridge "'+str(self)+'"', debug=True) self.say(say_levels.notice, 'bridge "'+str(self)+'" is running in '+self.mode+' mode', on_irc=False) else: self.mode = None self.say(say_levels.error, 'failed to connect to the XMPP room, leaving ...', on_xmpp=False) for error in errors: try: raise error except xmpp.muc.RemoteServerNotFound: self._RemoteServerNotFound_handler() except: trace = traceback.format_exc().splitlines()[-1] self.bot.error(say_levels.error, 'failed to connect to the XMPP room of bridge "'+str(self)+'", stopping bridge\n'+trace, send_to_admins=True) self.stop(message='Failed to connect to the XMPP room, stopping bridge', log=False)	1c428761fad5529b2fa3940d261d3286f3d1fd2e /local1/tlutelli/issta_data/temp/all_python//python/2010_temp/2010/9915/1c428761fad5529b2fa3940d261d3286f3d1fd2e/bridge.py