|
""" |
|
Copyright 2021, Dana-Farber Cancer Institute and Weill Cornell Medicine |
|
License: GNU GPL 2.0 |
|
""" |
|
|
|
import warnings |
|
|
|
from pathml.ml.models.hovernet import ( |
|
HoVerNet, |
|
_BatchNormRelu, |
|
_ce_loss_nc_head, |
|
_ce_loss_np_head, |
|
_convert_multiclass_mask_to_binary, |
|
_dice_loss_nc_head, |
|
_dice_loss_np_head, |
|
_get_gradient_hv, |
|
_HoverNetDecoder, |
|
_HoVerNetDenseUnit, |
|
_HoVerNetEncoder, |
|
_HoVerNetResidualUnit, |
|
_loss_hv_grad, |
|
_loss_hv_mse, |
|
_make_HoVerNet_dense_block, |
|
_make_HoVerNet_residual_block, |
|
_post_process_single_hovernet, |
|
_vis_outputs_single, |
|
compute_hv_map, |
|
extract_nuclei_info, |
|
group_centroids_by_type, |
|
loss_hovernet, |
|
post_process_batch_hovernet, |
|
remove_small_objs, |
|
) |
|
|
|
|
|
warnings.warn( |
|
"Importing from 'pathml.ml.hovernet' is deprecated and will be removed in a future version. " |
|
"Please use 'pathml.ml.models.hovernet' instead.", |
|
DeprecationWarning, |
|
stacklevel=2, |
|
) |
|
|
|
|
|
__all__ = [ |
|
"_BatchNormRelu", |
|
"_HoVerNetResidualUnit", |
|
"_make_HoVerNet_residual_block", |
|
"_HoVerNetEncoder", |
|
"_HoVerNetDenseUnit", |
|
"_make_HoVerNet_dense_block", |
|
"_HoverNetDecoder", |
|
"HoVerNet", |
|
"_convert_multiclass_mask_to_binary", |
|
"_dice_loss_np_head", |
|
"_dice_loss_nc_head", |
|
"_ce_loss_nc_head", |
|
"_ce_loss_np_head", |
|
"compute_hv_map", |
|
"_get_gradient_hv", |
|
"_loss_hv_grad", |
|
"_loss_hv_mse", |
|
"loss_hovernet", |
|
"remove_small_objs", |
|
"_post_process_single_hovernet", |
|
"post_process_batch_hovernet", |
|
"_vis_outputs_single", |
|
"extract_nuclei_info", |
|
"group_centroids_by_type", |
|
] |
|
|