id
stringlengths
1
6
tokens
sequence
labels
sequence
660100
[ "import", "{", "ControlsPlugin", "}", "from", "'./plugin'", ";", "export", "type", "{", "ControlOutput", ",", "ControlFactory", ",", "ControlEmbeddable", ",", "ControlEditorProps", ",", "CommonControlOutput", ",", "IEditableControlFactory", ",", "}", "from", "'./types'", ";", "export", "type", "{", "ControlWidth", ",", "ControlStyle", ",", "ParentIgnoreSettings", ",", "ControlInput", ",", "}", "from", "'../common/types'", ";", "export", "{", "OPTIONS_LIST_CONTROL", ",", "CONTROL_GROUP_TYPE", "}", "from", "'../common'", ";", "export", "{", "ControlGroupContainer", ",", "ControlGroupContainerFactory", ",", "type", ",", "ControlGroupInput", ",", "type", ",", "ControlGroupOutput", ",", "}", "from", "'./control_group'", ";", "export", "{", "OptionsListEmbeddableFactory", ",", "OptionsListEmbeddable", ",", "type", ",", "OptionsListEmbeddableInput", ",", "}", "from", "'./control_types'", ";", "export", "function", "plugin", "(", ")", "{", "return", "new", "ControlsPlugin", "(", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null ]
660101
[ "import", "{", "ControlEmbeddable", ",", "ControlFactory", ",", "ControlInput", ",", "ControlOutput", "}", "from", "'.'", ";", "import", "{", "EmbeddableFactory", "}", "from", "'../../embeddable/public'", ";", "import", "{", "ControlTypeRegistry", "}", "from", "'./services/controls'", ";", "export", "class", "ControlsService", "{", "private", "controlsFactoriesMap", ":", "ControlTypeRegistry", "=", "{", "}", ";", "public", "registerControlType", "=", "(", "factory", ")", "=>", "{", "this", ".", "controlsFactoriesMap", "[", "factory", ".", "type", "]", "=", "factory", ";", "}", ";", "public", "getControlFactory", "=", "<", "I", "extends", "ControlInput", "=", "ControlInput", ",", "O", "extends", "ControlOutput", "=", "ControlOutput", ",", "E", "extends", "ControlEmbeddable", "<", "I", ",", "O", ">", "=", "ControlEmbeddable", "<", "I", ",", "O", ">", ">", "(", "type", ")", "=>", "{", "return", "this", ".", "controlsFactoriesMap", "[", "type", "]", "as", "EmbeddableFactory", "<", "I", ",", "O", ",", "E", ">", ";", "}", ";", "public", "getControlTypes", "=", "(", ")", "=>", "Object", ".", "keys", "(", "this", ".", "controlsFactoriesMap", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660102
[ "import", "React", "from", "'react'", ";", "import", "{", "EuiFlexGroup", ",", "EuiFlexItem", "}", "from", "'@elastic/eui'", ";", "import", "{", "Story", "}", "from", "'@storybook/react'", ";", "const", "bar", "=", "'#c5ced8'", ";", "const", "panel", "=", "'#ffff'", ";", "const", "background", "=", "'#FAFBFD'", ";", "const", "minHeight", "=", "60", ";", "const", "panelStyle", "=", "{", "height", ":", "165", ",", "width", ":", "400", ",", "background", ":", "panel", ",", "}", ";", "const", "kqlBarStyle", "=", "{", "background", ":", "bar", ",", "padding", ":", "16", ",", "minHeight", ",", "fontStyle", ":", "'italic'", "}", ";", "const", "layout", "=", "(", "OptionStory", ")", "=>", "(", "<", "EuiFlexGroup", "style", "=", "{", "{", "background", "}", "}", "direction", "=", "\"column\"", ">", "<", "EuiFlexItem", "style", "=", "{", "kqlBarStyle", "}", ">", "KQL", "Bar", "<", "/EuiFlexItem>", "<", "EuiFlexItem", ">", "<", "OptionStory", "/>", "<", "/EuiFlexItem>", "<", "EuiFlexItem", ">", "<", "EuiFlexGroup", ">", "<", "EuiFlexItem", "style", "=", "{", "panelStyle", "}", "/>", "<", "EuiFlexItem", "style", "=", "{", "panelStyle", "}", "/", ">", "<", "EuiFlexItem", "style", "=", "{", "panelStyle", "}", "/>", "<", "/EuiFlexGroup>", "<", "/EuiFlexItem>", "<", "EuiFlexItem", ">", "<", "EuiFlexGroup", ">", "<", "EuiFlexItem", "style", "=", "{", "panelStyle", "}", "/>", "<", "EuiFlexItem", "style", "=", "{", "panelStyle", "}", "/", ">", "<", "EuiFlexItem", "style", "=", "{", "panelStyle", "}", "/>", "<", "/EuiFlexGroup>", "<", "/EuiFlexItem>", "<", "/EuiFlexGroup>);", "export", "const", "decorators", "=", "[", "layout", "]", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, 3, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 246, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660103
[ "import", "{", "EuiConfirmModal", ",", "EuiFlyout", "}", "from", "'@elastic/eui'", ";", "import", "{", "render", ",", "unmountComponentAtNode", "}", "from", "'react-dom'", ";", "import", "{", "Subject", "}", "from", "'rxjs'", ";", "import", "React", "from", "'react'", ";", "import", "{", "MountPoint", ",", "OverlayFlyoutOpenOptions", ",", "OverlayModalConfirmOptions", ",", "OverlayRef", ",", "}", "from", "'../../../../../core/public'", ";", "import", "{", "ControlsOverlaysService", "}", "from", "'../overlays'", ";", "import", "{", "MountWrapper", "}", "from", "'../../../../../core/public/utils'", ";", "import", "{", "PluginServiceFactory", "}", "from", "'../../../../presentation_util/public'", ";", "type", "OverlaysServiceFactory", "=", "PluginServiceFactory", "<", "ControlsOverlaysService", ">", ";", "/**\n * This code is a storybook stub version of src/core/public/overlays/overlay_service.ts\n * Eventually, core services should have simple storybook representations, but until that happens\n * it is necessary to recreate their functionality here.\n */", "class", "GenericOverlayRef", "implements", "OverlayRef", "{", "public", "readonly", "onClose", ":", "Promise", "<", "void", ">", ";", "private", "closeSubject", "=", "new", "Subject", "<", "void", ">", "(", ")", ";", "constructor", "(", ")", "{", "this", ".", "onClose", "=", "this", ".", "closeSubject", ".", "toPromise", "(", ")", ";", "}", "public", "close", "(", ")", "{", "if", "(", "!", "this", ".", "closeSubject", ".", "closed", ")", "{", "this", ".", "closeSubject", ".", "next", "(", ")", ";", "this", ".", "closeSubject", ".", "complete", "(", ")", ";", "}", "return", "this", ".", "onClose", ";", "}", "}", "export", "const", "overlaysServiceFactory", "=", "(", ")", "=>", "{", "const", "flyoutDomElement", "=", "document", ".", "createElement", "(", "'div'", ")", ";", "const", "modalDomElement", "=", "document", ".", "createElement", "(", "'div'", ")", ";", "let", "activeFlyout", ";", "let", "activeModal", ";", "const", "cleanupModal", "=", "(", ")", "=>", "{", "if", "(", "modalDomElement", "!=", "null", ")", "{", "unmountComponentAtNode", "(", "modalDomElement", ")", ";", "modalDomElement", ".", "innerHTML", "=", "''", ";", "}", "activeModal", "=", "null", ";", "}", ";", "const", "cleanupFlyout", "=", "(", ")", "=>", "{", "if", "(", "flyoutDomElement", "!=", "null", ")", "{", "unmountComponentAtNode", "(", "flyoutDomElement", ")", ";", "flyoutDomElement", ".", "innerHTML", "=", "''", ";", "}", "activeFlyout", "=", "null", ";", "}", ";", "return", "{", "openFlyout", ":", "(", "mount", ",", "options", "?", ")", "=>", "{", "if", "(", "activeFlyout", ")", "{", "activeFlyout", ".", "close", "(", ")", ";", "cleanupFlyout", "(", ")", ";", "}", "const", "flyout", "=", "new", "GenericOverlayRef", "(", ")", ";", "flyout", ".", "onClose", ".", "then", "(", "(", ")", "=>", "{", "if", "(", "activeFlyout", "===", "flyout", ")", "{", "cleanupFlyout", "(", ")", ";", "}", "}", ")", ";", "activeFlyout", "=", "flyout", ";", "const", "onCloseFlyout", "=", "(", ")", "=>", "{", "if", "(", "options", "?.", "onClose", ")", "{", "options", "?.", "onClose", "(", "flyout", ")", ";", "return", ";", "}", "flyout", ".", "close", "(", ")", ";", "}", ";", "render", "(", "<", "EuiFlyout", "onClose", "=", "{", "onCloseFlyout", "}", ">", "<", "MountWrapper", "mount", "=", "{", "mount", "}", "className", "=", "\"kbnOverlayMountWrapper\"", "/", ">", "<", "/EuiFlyout>, flyoutDomElement);", "return", "flyout", ";", "}", ",", "openConfirm", ":", "(", "message", ",", "options", "?", ")", "=>", "{", "if", "(", "activeModal", ")", "{", "activeModal", ".", "close", "(", ")", ";", "cleanupModal", "(", ")", ";", "}", "return", "new", "Promise", "(", "(", "resolve", ",", "reject", ")", "=>", "{", "let", "resolved", "=", "false", ";", "const", "closeModal", "=", "(", "confirmed", ")", "=>", "{", "resolved", "=", "true", ";", "modal", ".", "close", "(", ")", ";", "resolve", "(", "confirmed", ")", ";", "}", ";", "const", "modal", "=", "new", "GenericOverlayRef", "(", ")", ";", "modal", ".", "onClose", ".", "then", "(", "(", ")", "=>", "{", "if", "(", "activeModal", "===", "modal", ")", "{", "cleanupModal", "(", ")", ";", "}", "if", "(", "!", "resolved", ")", "{", "closeModal", "(", "false", ")", ";", "}", "}", ")", ";", "activeModal", "=", "modal", ";", "const", "props", "=", "{", "...", "options", ",", "children", ":", "typeof", "message", "===", "'string'", "?", "(", "message", ")", ":", "(", "<", "MountWrapper", "mount", "=", "{", "message", "}", "className", "=", "\"kbnOverlayMountWrapper\"", "/", ">", ")", ",", "onCancel", ":", "(", ")", "=>", "closeModal", "(", "false", ")", ",", "onConfirm", ":", "(", ")", "=>", "closeModal", "(", "true", ")", ",", "cancelButtonText", ":", "options", "?.", "cancelButtonText", "||", "''", ",", "confirmButtonText", ":", "options", "?.", "confirmButtonText", "||", "''", ",", "}", ";", "render", "(", "<", "EuiConfirmModal", "{", "...", "props", "}", "/", ">", ",", "modalDomElement", ")", ";", "}", ")", ";", "}", ",", "}", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, 39, null, null, null, null, null, null, null, null, null, 39, null, null, null, null, null, null, null, null, null, 1413, null, null, 1413, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8722, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 4, null, null, null, null, 8, null, null, null, null, 4, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660104
[ "import", "{", "PluginServiceFactory", "}", "from", "'../../../../presentation_util/public'", ";", "import", "{", "getCommonControlsService", ",", "ControlsService", "}", "from", "'../controls'", ";", "export", "type", "ControlsServiceFactory", "=", "PluginServiceFactory", "<", "ControlsService", ">", ";", "export", "const", "controlsServiceFactory", "=", "(", ")", "=>", "getCommonControlsService", "(", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null ]
660105
[ "import", "{", "OptionsListEmbeddableFactory", "}", "from", "'../control_types/options_list'", ";", "import", "{", "ControlsService", "}", "from", "'../services/controls'", ";", "import", "{", "ControlFactory", "}", "from", "'..'", ";", "export", "const", "populateStorybookControlFactories", "=", "(", "controlsServiceStub", ")", "=>", "{", "const", "optionsListFactoryStub", "=", "new", "OptionsListEmbeddableFactory", "(", ")", ";", "const", "optionsListControlFactory", "=", "optionsListFactoryStub", "as", "unknown", "as", "ControlFactory", ";", "optionsListControlFactory", ".", "getDefaultInput", "=", "(", ")", "=>", "(", "{", "}", ")", ";", "controlsServiceStub", ".", "registerControlType", "(", "optionsListControlFactory", ")", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, 9902, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660106
[ "import", "{", "EuiFlexGroup", ",", "EuiFlexItem", ",", "EuiSwitch", ",", "EuiTextAlign", "}", "from", "'@elastic/eui'", ";", "import", "React", ",", "{", "useEffect", ",", "useMemo", ",", "useState", ",", "useCallback", ",", "FC", "}", "from", "'react'", ";", "import", "useEffectOnce", "from", "'react-use/lib/useEffectOnce'", ";", "import", "uuid", "from", "'uuid'", ";", "import", "{", "getFlightOptionsAsync", ",", "storybookFlightsDataView", ",", "}", "from", "'../../../presentation_util/public/mocks'", ";", "import", "{", "ControlGroupContainerFactory", ",", "OptionsListEmbeddableInput", ",", "OPTIONS_LIST_CONTROL", ",", "}", "from", "'../'", ";", "import", "{", "ViewMode", "}", "from", "'../../../embeddable/public'", ";", "import", "{", "EmbeddablePersistableStateService", "}", "from", "'../../../embeddable/common'", ";", "import", "{", "decorators", "}", "from", "'./decorators'", ";", "import", "{", "ControlsPanels", "}", "from", "'../control_group/types'", ";", "import", "{", "ControlGroupContainer", "}", "from", "'../control_group'", ";", "import", "{", "pluginServices", ",", "registry", "}", "from", "'../services/storybook'", ";", "import", "{", "replaceValueSuggestionMethod", "}", "from", "'../services/storybook/data'", ";", "import", "{", "injectStorybookDataView", "}", "from", "'../services/storybook/data_views'", ";", "import", "{", "populateStorybookControlFactories", "}", "from", "'./storybook_control_factories'", ";", "export", "default", "{", "title", ":", "'Controls'", ",", "description", ":", "''", ",", "decorators", ",", "}", ";", "injectStorybookDataView", "(", "storybookFlightsDataView", ")", ";", "replaceValueSuggestionMethod", "(", "getFlightOptionsAsync", ")", ";", "const", "ControlGroupStoryComponent", "=", "(", "{", "panels", ",", "edit", "}", ")", "=>", "{", "const", "embeddableRoot", "=", "useMemo", "(", "(", ")", "=>", "React", ".", "createRef", "(", ")", ",", "[", "]", ")", ";", "const", "[", "embeddable", ",", "setEmbeddable", "]", "=", "useState", "<", "ControlGroupContainer", ">", "(", ")", ";", "const", "[", "viewMode", ",", "setViewMode", "]", "=", "useState", "<", "ViewMode", ">", "(", "edit", "===", "undefined", "||", "edit", "?", "ViewMode", ".", "EDIT", ":", "ViewMode", ".", "VIEW", ")", ";", "const", "handleToggleViewMode", "=", "useCallback", "(", "(", ")", "=>", "{", "if", "(", "embeddable", ")", "{", "const", "newViewMode", "=", "embeddable", ".", "getInput", "(", ")", ".", "viewMode", "===", "ViewMode", ".", "EDIT", "?", "ViewMode", ".", "VIEW", ":", "ViewMode", ".", "EDIT", ";", "embeddable", ".", "updateInput", "(", "{", "viewMode", ":", "newViewMode", "}", ")", ";", "}", "}", ",", "[", "embeddable", "]", ")", ";", "pluginServices", ".", "setRegistry", "(", "registry", ".", "start", "(", "{", "}", ")", ")", ";", "populateStorybookControlFactories", "(", "pluginServices", ".", "getServices", "(", ")", ".", "controls", ")", ";", "useEffectOnce", "(", "(", ")", "=>", "{", "(", "async", "(", ")", "=>", "{", "const", "factory", "=", "new", "ControlGroupContainerFactory", "(", "{", "}", "as", "unknown", "as", "EmbeddablePersistableStateService", ")", ";", "const", "controlGroupContainerEmbeddable", "=", "await", "factory", ".", "create", "(", "{", "controlStyle", ":", "'oneLine'", ",", "panels", ":", "panels", "??", "{", "}", ",", "id", ":", "uuid", ".", "v4", "(", ")", ",", "viewMode", ",", "}", ")", ";", "if", "(", "controlGroupContainerEmbeddable", "&&", "embeddableRoot", ".", "current", ")", "{", "controlGroupContainerEmbeddable", ".", "render", "(", "embeddableRoot", ".", "current", ")", ";", "}", "setEmbeddable", "(", "controlGroupContainerEmbeddable", ")", ";", "}", ")", "(", ")", ";", "}", ")", ";", "useEffect", "(", "(", ")", "=>", "{", "if", "(", "embeddable", ")", "{", "const", "subscription", "=", "embeddable", ".", "getInput$", "(", ")", ".", "subscribe", "(", "(", "updatedInput", ")", "=>", "{", "if", "(", "updatedInput", ".", "viewMode", ")", "{", "setViewMode", "(", "updatedInput", ".", "viewMode", ")", ";", "}", "}", ")", ";", "return", "(", ")", "=>", "subscription", ".", "unsubscribe", "(", ")", ";", "}", "}", ",", "[", "embeddable", ",", "setViewMode", "]", ")", ";", "return", "(", "<", ">", "<", "EuiFlexGroup", ">", "<", "EuiFlexItem", ">", "<", "EuiTextAlign", "textAlign", "=", "\"right\"", ">", "<", "EuiSwitch", "checked", "=", "{", "viewMode", "===", "'edit'", "}", "label", "=", "\"Edit\"", "onChange", "=", "{", "handleToggleViewMode", "}", "/", ">", "<", "/EuiTextAlign>", "<", "/EuiFlexItem>", "<", "/EuiFlexGroup>", "<", "br", "/", ">", "<", "div", "ref", "=", "{", "embeddableRoot", "}", "/>", "<", "/>);", "}", ";", "export", "const", "EmptyControlGroupStory", "=", "(", ")", "=>", "<", "ControlGroupStoryComponent", "edit", "=", "{", "false", "}", "/>;", "export", "const", "ConfiguredControlGroupStory", "=", "(", ")", "=>", "(", "<", "ControlGroupStoryComponent", "panels", "=", "{", "{", "optionsList1", ":", "{", "type", ":", "OPTIONS_LIST_CONTROL", ",", "order", ":", "1", ",", "width", ":", "'auto'", ",", "explicitInput", ":", "{", "title", ":", "'Origin City'", ",", "id", ":", "'optionsList1'", ",", "dataViewId", ":", "'demoDataFlights'", ",", "fieldName", ":", "'OriginCityName'", ",", "selectedOptions", ":", "[", "'Toronto'", "]", ",", "}", "as", "OptionsListEmbeddableInput", ",", "}", ",", "optionsList2", ":", "{", "type", ":", "OPTIONS_LIST_CONTROL", ",", "order", ":", "2", ",", "width", ":", "'auto'", ",", "explicitInput", ":", "{", "title", ":", "'Destination City'", ",", "id", ":", "'optionsList2'", ",", "dataViewId", ":", "'demoDataFlights'", ",", "fieldName", ":", "'DestCityName'", ",", "selectedOptions", ":", "[", "'London'", "]", ",", "}", "as", "OptionsListEmbeddableInput", ",", "}", ",", "optionsList3", ":", "{", "type", ":", "OPTIONS_LIST_CONTROL", ",", "order", ":", "3", ",", "width", ":", "'auto'", ",", "explicitInput", ":", "{", "title", ":", "'Carrier'", ",", "id", ":", "'optionsList3'", ",", "dataViewId", ":", "'demoDataFlights'", ",", "fieldName", ":", "'Carrier'", ",", "}", "as", "OptionsListEmbeddableInput", ",", "}", ",", "}", "}", "/>);" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 45, null, null, null, null, null, null, null, null, null, null, null, 823, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660107
[ "import", "{", "EmbeddablePersistableStateService", "}", "from", "'../../../embeddable/common'", ";", "import", "{", "EmbeddableRegistryDefinition", "}", "from", "'../../../embeddable/server'", ";", "import", "{", "CONTROL_GROUP_TYPE", "}", "from", "'../../common'", ";", "import", "{", "createControlGroupExtract", ",", "createControlGroupInject", ",", "}", "from", "'../../common/control_group/control_group_persistable_state'", ";", "export", "const", "controlGroupContainerPersistableStateServiceFactory", "=", "(", "persistableStateService", ")", ":", "EmbeddableRegistryDefinition", "=>", "{", "return", "{", "id", ":", "CONTROL_GROUP_TYPE", ",", "extract", ":", "createControlGroupExtract", "(", "persistableStateService", ")", ",", "inject", ":", "createControlGroupInject", "(", "persistableStateService", ")", ",", "}", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 36794, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660108
[ "import", "{", "EmbeddableRegistryDefinition", "}", "from", "'../../../../embeddable/server'", ";", "import", "{", "OPTIONS_LIST_CONTROL", "}", "from", "'../../../common'", ";", "import", "{", "createOptionsListExtract", ",", "createOptionsListInject", ",", "}", "from", "'../../../common/control_types/options_list/options_list_persistable_state'", ";", "export", "const", "optionsListPersistableStateServiceFactory", "=", "(", ")", ":", "EmbeddableRegistryDefinition", "=>", "{", "return", "{", "id", ":", "OPTIONS_LIST_CONTROL", ",", "extract", ":", "createOptionsListExtract", "(", ")", ",", "inject", ":", "createOptionsListInject", "(", ")", ",", "}", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660109
[ "import", "{", "CoreSetup", ",", "Plugin", "}", "from", "'kibana/server'", ";", "import", "{", "EmbeddableSetup", "}", "from", "'../../embeddable/server'", ";", "import", "{", "controlGroupContainerPersistableStateServiceFactory", "}", "from", "'./control_group/control_group_container_factory'", ";", "import", "{", "optionsListPersistableStateServiceFactory", "}", "from", "'./control_types/options_list/options_list_embeddable_factory'", ";", "interface", "SetupDeps", "{", "embeddable", ":", "EmbeddableSetup", ";", "}", "export", "class", "ControlsPlugin", "implements", "Plugin", "<", "object", ",", "object", ",", "SetupDeps", ">", "{", "public", "setup", "(", "core", ",", "plugins", ")", "{", "plugins", ".", "embeddable", ".", "registerEmbeddableFactory", "(", "optionsListPersistableStateServiceFactory", "(", ")", ")", ";", "plugins", ".", "embeddable", ".", "registerEmbeddableFactory", "(", "controlGroupContainerPersistableStateServiceFactory", "(", "plugins", ".", "embeddable", ")", ")", ";", "return", "{", "}", ";", "}", "public", "start", "(", ")", "{", "return", "{", "}", ";", "}", "public", "stop", "(", ")", "{", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, 501, null, 3479, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null ]
660110
[ "import", "{", "ControlsPlugin", "}", "from", "'./plugin'", ";", "export", "const", "plugin", "=", "(", ")", "=>", "new", "ControlsPlugin", "(", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null ]
660111
[ "import", "React", "from", "'react'", ";", "import", "{", "DecoratorFn", "}", "from", "'@storybook/react'", ";", "import", "{", "I18nProvider", "}", "from", "'@kbn/i18n-react'", ";", "import", "{", "pluginServices", "}", "from", "'../public/services'", ";", "import", "{", "ControlsServices", "}", "from", "'../public/services'", ";", "import", "{", "providers", "}", "from", "'../public/services/storybook'", ";", "import", "{", "PluginServiceRegistry", "}", "from", "'../../presentation_util/public'", ";", "import", "{", "KibanaContextProvider", "as", "KibanaReactProvider", "}", "from", "'../../kibana_react/public'", ";", "const", "settings", "=", "new", "Map", "(", ")", ";", "settings", ".", "set", "(", "'darkMode'", ",", "true", ")", ";", "const", "services", "=", "{", "http", ":", "{", "basePath", ":", "{", "get", ":", "(", ")", "=>", "''", ",", "prepend", ":", "(", ")", "=>", "''", ",", "remove", ":", "(", ")", "=>", "''", ",", "serverBasePath", ":", "''", ",", "}", ",", "}", ",", "uiSettings", ":", "settings", ",", "}", ";", "export", "const", "servicesContextDecorator", "=", "(", "story", ",", "storybook", ")", "=>", "{", "const", "registry", "=", "new", "PluginServiceRegistry", "<", "ControlsServices", ">", "(", "providers", ")", ";", "pluginServices", ".", "setRegistry", "(", "registry", ".", "start", "(", "storybook", ".", "args", ")", ")", ";", "const", "ContextProvider", "=", "pluginServices", ".", "getContextProvider", "(", ")", ";", "return", "(", "<", "I18nProvider", ">", "<", "KibanaReactProvider", "services", "=", "{", "services", "}", ">", "<", "ContextProvider", ">", "{", "story", "(", ")", "}", "<", "/ContextProvider>", "<", "/KibanaReactProvider>", "<", "/I18nProvider>);", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 19, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 26305, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660112
[ "import", "React", "from", "'react'", ";", "import", "{", "addDecorator", "}", "from", "'@storybook/react'", ";", "import", "{", "Title", ",", "Subtitle", ",", "Description", ",", "Primary", ",", "Stories", "}", "from", "'@storybook/addon-docs/blocks'", ";", "import", "{", "servicesContextDecorator", "}", "from", "'./decorator'", ";", "addDecorator", "(", "servicesContextDecorator", ")", ";", "export", "const", "parameters", "=", "{", "docs", ":", "{", "page", ":", "(", ")", "=>", "(", "<", ">", "<", "Title", "/>", "<", "Subtitle", "/", ">", "<", "Description", "/>", "<", "Primary", "/", ">", "<", "Stories", "/>", "<", "/>),", "}", ",", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660113
[ "'use strict'", ";", "import", "{", "addJSONProviders", "}", "from", "'./features/jsonContributions'", ";", "import", "*", "as", "httpRequest", "from", "'request-light'", ";", "import", "{", "ExtensionContext", ",", "env", ",", "workspace", "}", "from", "'vscode'", ";", "import", "*", "as", "nls", "from", "'vscode-nls'", ";", "export", "function", "activate", "(", "context", ")", "{", "nls", ".", "config", "(", "{", "locale", ":", "env", ".", "language", "}", ")", ";", "configureHttpRequest", "(", ")", ";", "workspace", ".", "onDidChangeConfiguration", "(", "e", "=>", "configureHttpRequest", "(", ")", ")", ";", "context", ".", "subscriptions", ".", "push", "(", "addJSONProviders", "(", "httpRequest", ".", "xhr", ")", ")", ";", "}", "function", "configureHttpRequest", "(", ")", "{", "let", "httpSettings", "=", "workspace", ".", "getConfiguration", "(", "'http'", ")", ";", "httpRequest", ".", "configure", "(", "httpSettings", ".", "get", "<", "string", ">", "(", "'proxy'", ")", ",", "httpSettings", ".", "get", "<", "boolean", ">", "(", "'proxyStrictSSL'", ")", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 606, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, 404, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660114
[ "export", "default", "class", "NestedFrequencyTable", "{", "public", "categories", ":", "{", "[", "key", "]", ":", "any", ";", "}", ";", "constructor", "(", "initialData", "=", "{", "}", ")", "{", "this", ".", "categories", "=", "{", "...", "initialData", "}", ";", "}", "total", "(", ")", "{", "let", "t", "=", "0", ";", "for", "(", "const", "k", "in", "this", ".", "categories", ")", "{", "const", "v", "=", "this", ".", "categories", "[", "k", "]", ";", "t", "+=", "v", ".", "total", "?", "v", ".", "total", "(", ")", ":", "v", ";", "}", "return", "t", ";", "}", "decrement", "(", "slotName", ",", "amount", ")", "{", "if", "(", "!", "amount", ")", "{", "amount", "=", "1", ";", "}", "if", "(", "!", "slotName", ")", "{", "slotName", "=", "'default'", ";", "}", "else", "{", "slotName", "=", "slotName", ".", "toString", "(", ")", ";", "}", "if", "(", "this", ".", "categories", "[", "slotName", "]", ")", "{", "this", ".", "categories", "[", "slotName", "]", "=", "Math", ".", "max", "(", "0", ",", "this", ".", "categories", "[", "slotName", "]", "-", "amount", ")", ";", "return", "this", ".", "categories", "[", "slotName", "]", ";", "}", "return", "0", ";", "}", "increment", "(", "slotName", ",", "amount", ")", "{", "if", "(", "!", "amount", ")", "{", "amount", "=", "1", ";", "}", "if", "(", "!", "slotName", ")", "{", "slotName", "=", "'default'", ";", "}", "else", "{", "slotName", "=", "slotName", ".", "toString", "(", ")", ";", "}", "this", ".", "categories", "[", "slotName", "]", "=", "(", "this", ".", "categories", "[", "slotName", "]", "||", "0", ")", "+", "amount", ";", "return", "this", ".", "categories", "[", "slotName", "]", ";", "}", "get", "(", "slotName", ")", "{", "return", "this", ".", "categories", "[", "slotName", "]", "||", "0", ";", "}", "getNested", "(", "path", ")", "{", "if", "(", "typeof", "path", "===", "'string'", ")", "{", "path", "=", "path", ".", "split", "(", "'/'", ")", ";", "}", "if", "(", "!", "path", ".", "length", ")", "{", "return", "this", ";", "}", "const", "slotName", "=", "path", "[", "0", "]", ".", "toString", "(", ")", ";", "let", "slot", "=", "this", ".", "categories", "[", "slotName", "]", ";", "if", "(", "!", "slot", "||", "!", "slot", ".", "categories", ")", "{", "this", ".", "categories", "[", "slotName", "]", "=", "new", "NestedFrequencyTable", "(", "slot", "?", "{", "default", ":", "slot", "+", "0", "}", ":", "{", "}", ")", ";", "}", "slot", "=", "this", ".", "categories", "[", "slotName", "]", ";", "if", "(", "path", ".", "length", ">", "1", ")", "{", "return", "slot", ".", "getNested", "(", "path", ".", "slice", "(", "1", ")", ")", ";", "}", "return", "slot", ";", "}", "toString", "(", ")", "{", "return", "this", ".", "total", "(", ")", ".", "toPrecision", "(", "6", ")", ".", "toString", "(", ")", ".", "replace", "(", "/\\.?0+$/", ",", "''", ")", ";", "}", "valueOf", "(", ")", "{", "return", "this", ".", "total", "(", ")", ";", "}", "forEach", "(", "func", ",", "ctx", ")", "{", "if", "(", "ctx", ")", "{", "for", "(", "const", "slotName", "in", "this", ".", "categories", ")", "{", "func", ".", "call", "(", "ctx", ",", "this", ".", "categories", "[", "slotName", "]", ",", "slotName", ")", ";", "}", "}", "else", "{", "for", "(", "const", "slotName", "in", "this", ".", "categories", ")", "{", "func", "(", "this", ".", "categories", "[", "slotName", "]", ",", "slotName", ")", ";", "}", "}", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, 4, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660115
[ "import", "{", "revcom", "}", "from", "'@jbrowse/core/util'", ";", "export", "interface", "Mismatch", "{", "qual", "?", ":", "number", ";", "start", ":", "number", ";", "length", ":", "number", ";", "type", ":", "string", ";", "base", ":", "string", ";", "altbase", "?", ":", "string", ";", "seq", "?", ":", "string", ";", "cliplen", "?", ":", "number", ";", "}", "export", "function", "parseCigar", "(", "cigar", ")", "{", "return", "(", "cigar", "||", "''", ")", ".", "split", "(", "/([MIDNSHPX=])/", ")", ";", "}", "export", "function", "cigarToMismatches", "(", "ops", ",", "seq", ",", "qual", "?", ")", "{", "let", "currOffset", "=", "0", ";", "let", "seqOffset", "=", "0", ";", "const", "mismatches", "=", "[", "]", ";", "for", "(", "let", "i", "=", "0", ";", "i", "<", "ops", ".", "length", "-", "1", ";", "i", "+=", "2", ")", "{", "const", "len", "=", "+", "ops", "[", "i", "]", ";", "const", "op", "=", "ops", "[", "i", "+", "1", "]", ";", "if", "(", "op", "===", "'M'", "||", "op", "===", "'='", "||", "op", "===", "'E'", ")", "{", "seqOffset", "+=", "len", ";", "}", "if", "(", "op", "===", "'I'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "currOffset", ",", "type", ":", "'insertion'", ",", "base", ":", "`${", "len", "}`", ",", "length", ":", "0", ",", "}", ")", ";", "seqOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'D'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "currOffset", ",", "type", ":", "'deletion'", ",", "base", ":", "'*'", ",", "length", ":", "len", ",", "}", ")", ";", "}", "else", "if", "(", "op", "===", "'N'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "currOffset", ",", "type", ":", "'skip'", ",", "base", ":", "'N'", ",", "length", ":", "len", ",", "}", ")", ";", "}", "else", "if", "(", "op", "===", "'X'", ")", "{", "const", "r", "=", "seq", ".", "slice", "(", "seqOffset", ",", "seqOffset", "+", "len", ")", ";", "const", "q", "=", "qual", "?.", "slice", "(", "seqOffset", ",", "seqOffset", "+", "len", ")", "||", "[", "]", ";", "for", "(", "let", "j", "=", "0", ";", "j", "<", "len", ";", "j", "++", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "currOffset", "+", "j", ",", "type", ":", "'mismatch'", ",", "base", ":", "r", "[", "j", "]", ",", "qual", ":", "q", "[", "j", "]", ",", "length", ":", "1", ",", "}", ")", ";", "}", "seqOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'H'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "currOffset", ",", "type", ":", "'hardclip'", ",", "base", ":", "`H${", "len", "}`", ",", "cliplen", ":", "len", ",", "length", ":", "1", ",", "}", ")", ";", "}", "else", "if", "(", "op", "===", "'S'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "currOffset", ",", "type", ":", "'softclip'", ",", "base", ":", "`S${", "len", "}`", ",", "cliplen", ":", "len", ",", "length", ":", "1", ",", "}", ")", ";", "seqOffset", "+=", "len", ";", "}", "if", "(", "op", "!==", "'I'", "&&", "op", "!==", "'S'", "&&", "op", "!==", "'H'", ")", "{", "currOffset", "+=", "len", ";", "}", "}", "return", "mismatches", ";", "}", "returns", "export", "function", "mdToMismatches", "(", "mdstring", ",", "cigarOps", ",", "cigarMismatches", ",", "seq", ",", "qual", "?", ")", "{", "const", "mismatchRecords", "=", "[", "]", ";", "let", "curr", "=", "{", "start", ":", "0", ",", "base", ":", "''", ",", "length", ":", "0", ",", "type", ":", "'mismatch'", "}", ";", "const", "skips", "=", "cigarMismatches", ".", "filter", "(", "cigar", "=>", "cigar", ".", "type", "===", "'skip'", ")", ";", "let", "lastCigar", "=", "0", ";", "let", "lastTemplateOffset", "=", "0", ";", "let", "lastRefOffset", "=", "0", ";", "let", "lastSkipPos", "=", "0", ";", "function", "nextRecord", "(", ")", "{", "mismatchRecords", ".", "push", "(", "curr", ")", ";", "curr", "=", "{", "start", ":", "curr", ".", "start", "+", "curr", ".", "length", ",", "length", ":", "0", ",", "base", ":", "''", ",", "type", ":", "'mismatch'", ",", "}", ";", "}", "function", "getTemplateCoordLocal", "(", "refCoord", ")", "{", "let", "templateOffset", "=", "lastTemplateOffset", ";", "let", "refOffset", "=", "lastRefOffset", ";", "for", "(", "let", "i", "=", "lastCigar", ";", "i", "<", "cigarOps", ".", "length", "&&", "refOffset", "<=", "refCoord", ";", "i", "+=", "2", ",", "lastCigar", "=", "i", ")", "{", "const", "len", "=", "+", "cigarOps", "[", "i", "]", ";", "const", "op", "=", "cigarOps", "[", "i", "+", "1", "]", ";", "if", "(", "op", "===", "'S'", "||", "op", "===", "'I'", ")", "{", "templateOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'D'", "||", "op", "===", "'P'", "||", "op", "===", "'N'", ")", "{", "refOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "!==", "'H'", ")", "{", "templateOffset", "+=", "len", ";", "refOffset", "+=", "len", ";", "}", "}", "lastTemplateOffset", "=", "templateOffset", ";", "lastRefOffset", "=", "refOffset", ";", "return", "templateOffset", "-", "(", "refOffset", "-", "refCoord", ")", ";", "}", "const", "md", "=", "mdstring", ".", "match", "(", "/(\\d+|\\^[a-z]+|[a-z])/gi", ")", "||", "[", "]", ";", "for", "(", "let", "i", "=", "0", ";", "i", "<", "md", ".", "length", ";", "i", "++", ")", "{", "const", "token", "=", "md", "[", "i", "]", ";", "const", "num", "=", "+", "token", ";", "if", "(", "!", "Number", ".", "isNaN", "(", "num", ")", ")", "{", "curr", ".", "start", "+=", "num", ";", "}", "else", "if", "(", "token", ".", "startsWith", "(", "'^'", ")", ")", "{", "curr", ".", "length", "=", "token", ".", "length", "-", "1", ";", "curr", ".", "base", "=", "'*'", ";", "curr", ".", "type", "=", "'deletion'", ";", "curr", ".", "seq", "=", "token", ".", "substring", "(", "1", ")", ";", "nextRecord", "(", ")", ";", "}", "else", "{", "for", "(", "let", "j", "=", "0", ";", "j", "<", "token", ".", "length", ";", "j", "+=", "1", ")", "{", "curr", ".", "length", "=", "1", ";", "while", "(", "lastSkipPos", "<", "skips", ".", "length", ")", "{", "const", "mismatch", "=", "skips", "[", "lastSkipPos", "]", ";", "if", "(", "curr", ".", "start", ">=", "mismatch", ".", "start", ")", "{", "curr", ".", "start", "+=", "mismatch", ".", "length", ";", "lastSkipPos", "++", ";", "}", "else", "{", "break", ";", "}", "}", "const", "s", "=", "cigarOps", "?", "getTemplateCoordLocal", "(", "curr", ".", "start", ")", ":", "curr", ".", "start", ";", "curr", ".", "base", "=", "seq", "?", "seq", ".", "substr", "(", "s", ",", "1", ")", ":", "'X'", ";", "const", "qualScore", "=", "qual", "?.", "slice", "(", "s", ",", "s", "+", "1", ")", "[", "0", "]", ";", "if", "(", "qualScore", ")", "{", "curr", ".", "qual", "=", "qualScore", ";", "}", "curr", ".", "altbase", "=", "token", ";", "nextRecord", "(", ")", ";", "}", "}", "}", "return", "mismatchRecords", ";", "}", "export", "function", "getTemplateCoord", "(", "refCoord", ",", "cigarOps", ")", "{", "let", "templateOffset", "=", "0", ";", "let", "refOffset", "=", "0", ";", "for", "(", "let", "i", "=", "0", ";", "i", "<", "cigarOps", ".", "length", "&&", "refOffset", "<=", "refCoord", ";", "i", "+=", "2", ")", "{", "const", "len", "=", "+", "cigarOps", "[", "i", "]", ";", "const", "op", "=", "cigarOps", "[", "i", "+", "1", "]", ";", "if", "(", "op", "===", "'S'", "||", "op", "===", "'I'", ")", "{", "templateOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'D'", "||", "op", "===", "'P'", ")", "{", "refOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "!==", "'H'", ")", "{", "templateOffset", "+=", "len", ";", "refOffset", "+=", "len", ";", "}", "}", "return", "templateOffset", "-", "(", "refOffset", "-", "refCoord", ")", ";", "}", "export", "function", "getMismatches", "(", "cigarString", ",", "mdString", ",", "seq", ",", "qual", "?", ")", "{", "let", "mismatches", "=", "[", "]", ";", "let", "cigarOps", "=", "[", "]", ";", "if", "(", "cigarString", ")", "{", "cigarOps", "=", "parseCigar", "(", "cigarString", ")", ";", "mismatches", "=", "mismatches", ".", "concat", "(", "cigarToMismatches", "(", "cigarOps", ",", "seq", ",", "qual", ")", ")", ";", "}", "if", "(", "mdString", ")", "{", "mismatches", "=", "mismatches", ".", "concat", "(", "mdToMismatches", "(", "mdString", ",", "cigarOps", ",", "mismatches", ",", "seq", ",", "qual", ")", ")", ";", "}", "const", "seen", "=", "{", "}", ";", "return", "mismatches", ".", "filter", "(", "m", "=>", "{", "const", "key", "=", "`${", "m", ".", "type", "},${", "m", ".", "start", "},${", "m", ".", "length", "}`", ";", "const", "s", "=", "seen", "[", "key", "]", ";", "seen", "[", "key", "]", "=", "true", ";", "return", "!", "s", ";", "}", ")", ";", "}", "export", "function", "generateMD", "(", "target", ",", "query", ",", "cigar", ")", "{", "let", "queryOffset", "=", "0", ";", "let", "targetOffset", "=", "0", ";", "let", "lengthMD", "=", "0", ";", "if", "(", "!", "target", ")", "{", "console", ".", "warn", "(", "'no ref supplied to generateMD'", ")", ";", "return", "''", ";", "}", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "let", "str", "=", "''", ";", "for", "(", "let", "i", "=", "0", ";", "i", "<", "cigarOps", ".", "length", ";", "i", "+=", "2", ")", "{", "const", "len", "=", "+", "cigarOps", "[", "i", "]", ";", "const", "op", "=", "cigarOps", "[", "i", "+", "1", "]", ";", "if", "(", "op", "===", "'M'", "||", "op", "===", "'X'", "||", "op", "===", "'='", ")", "{", "for", "(", "let", "j", "=", "0", ";", "j", "<", "len", ";", "j", "++", ")", "{", "if", "(", "query", "[", "queryOffset", "+", "j", "]", ".", "toLowerCase", "(", ")", "!==", "target", "[", "targetOffset", "+", "j", "]", ".", "toLowerCase", "(", ")", ")", "{", "str", "+=", "`${", "lengthMD", "}${", "target", "[", "targetOffset", "+", "j", "]", ".", "toUpperCase", "(", ")", "}`", ";", "lengthMD", "=", "0", ";", "}", "else", "{", "lengthMD", "++", ";", "}", "}", "queryOffset", "+=", "len", ";", "targetOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'I'", ")", "{", "queryOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'D'", ")", "{", "let", "tmp", "=", "''", ";", "for", "(", "let", "j", "=", "0", ";", "j", "<", "len", ";", "j", "++", ")", "{", "tmp", "+=", "target", "[", "targetOffset", "+", "j", "]", ".", "toUpperCase", "(", ")", ";", "}", "str", "+=", "`${", "lengthMD", "}^${", "tmp", "}`", ";", "lengthMD", "=", "0", ";", "targetOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'N'", ")", "{", "targetOffset", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'S'", ")", "{", "queryOffset", "+=", "len", ";", "}", "}", "if", "(", "lengthMD", ">", "0", ")", "{", "str", "+=", "lengthMD", ";", "}", "return", "str", ";", "}", "export", "function", "*", "getNextRefPos", "(", "cigarOps", ",", "positions", ")", "{", "let", "cigarIdx", "=", "0", ";", "let", "readPos", "=", "0", ";", "let", "refPos", "=", "0", ";", "for", "(", "let", "i", "=", "0", ";", "i", "<", "positions", ".", "length", ";", "i", "++", ")", "{", "const", "pos", "=", "positions", "[", "i", "]", ";", "for", "(", ";", "cigarIdx", "<", "cigarOps", ".", "length", "&&", "readPos", "<", "pos", ";", "cigarIdx", "+=", "2", ")", "{", "const", "len", "=", "+", "cigarOps", "[", "cigarIdx", "]", ";", "const", "op", "=", "cigarOps", "[", "cigarIdx", "+", "1", "]", ";", "if", "(", "op", "===", "'S'", "||", "op", "===", "'I'", ")", "{", "readPos", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'D'", "||", "op", "===", "'N'", ")", "{", "refPos", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'M'", "||", "op", "===", "'X'", "||", "op", "===", "'='", ")", "{", "readPos", "+=", "len", ";", "refPos", "+=", "len", ";", "}", "}", "yield", "positions", "[", "i", "]", "-", "readPos", "+", "refPos", ";", "}", "}", "export", "function", "getModificationPositions", "(", "mm", ",", "fseq", ",", "fstrand", ")", "{", "const", "seq", "=", "fstrand", "===", "-", "1", "?", "revcom", "(", "fseq", ")", ":", "fseq", ";", "return", "mm", ".", "split", "(", "';'", ")", ".", "filter", "(", "mod", "=>", "!", "!", "mod", ")", ".", "map", "(", "mod", "=>", "{", "const", "[", "basemod", ",", "...", "skips", "]", "=", "mod", ".", "split", "(", "','", ")", ";", "const", "matches", "=", "basemod", ".", "match", "(", "/([A-Z])([-+])([^,.?]+)([.?])?/", ")", ";", "if", "(", "!", "matches", ")", "{", "throw", "new", "Error", "(", "'bad format for MM tag'", ")", ";", "}", "const", "[", ",", "base", ",", "strand", ",", "typestr", "]", "=", "matches", ";", "const", "types", "=", "typestr", ".", "split", "(", "/(\\d+|.)/", ")", ".", "filter", "(", "f", "=>", "!", "!", "f", ")", ";", "if", "(", "strand", "===", "'-'", ")", "{", "console", ".", "warn", "(", "'unsupported negative strand modifications'", ")", ";", "return", "{", "type", ":", "'unsupported'", ",", "positions", ":", "[", "]", "}", ";", "}", "return", "types", ".", "map", "(", "type", "=>", "{", "let", "i", "=", "0", ";", "return", "{", "type", ",", "positions", ":", "skips", ".", "map", "(", "score", "=>", "+", "score", ")", ".", "map", "(", "delta", "=>", "{", "do", "{", "if", "(", "base", "===", "'N'", "||", "base", "===", "seq", "[", "i", "]", ")", "{", "delta", "--", ";", "}", "i", "++", ";", "}", "while", "(", "delta", ">=", "0", "&&", "i", "<", "seq", ".", "length", ")", ";", "const", "temp", "=", "i", "-", "1", ";", "return", "fstrand", "===", "-", "1", "?", "seq", ".", "length", "-", "1", "-", "temp", ":", "temp", ";", "}", ")", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", "-", "b", ")", ",", "}", ";", "}", ")", ";", "}", ")", ".", "flat", "(", ")", ";", "}", "export", "function", "getModificationTypes", "(", "mm", ")", "{", "const", "mods", "=", "mm", ".", "split", "(", "';'", ")", ";", "return", "mods", ".", "filter", "(", "mod", "=>", "!", "!", "mod", ")", ".", "map", "(", "mod", "=>", "{", "const", "[", "basemod", "]", "=", "mod", ".", "split", "(", "','", ")", ";", "const", "matches", "=", "basemod", ".", "match", "(", "/([A-Z])([-+])([^,]+)/", ")", ";", "if", "(", "!", "matches", ")", "{", "throw", "new", "Error", "(", "'bad format for MM tag'", ")", ";", "}", "const", "[", ",", ",", ",", "typestr", "]", "=", "matches", ";", "return", "typestr", ".", "split", "(", "/(\\d+|.)/", ")", ".", "filter", "(", "f", "=>", "!", "!", "f", ")", ";", "}", ")", ".", "flat", "(", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 5, null, 2, null, 12, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 5, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 2, null, 5, null, 5, null, 2, null, 12, null, null, null, null, 5, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 3, null, null, null, 3, null, null, null, null, 3, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 63, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 3, null, 5, null, null, null, 3, null, null, null, null, 3, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 2, null, 2, null, 2, null, 12, null, null, null, null, 5, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, 23109, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 2, null, 2, null, 2, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 95, null, 5, null, 5, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 2, null, 2, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 63, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 2, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 63, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660116
[ "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "linearBasicDisplayConfigSchemaFactory", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "import", "{", "types", ",", "Instance", "}", "from", "'mobx-state-tree'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "function", "PileupConfigFactory", "(", "pluginManager", ")", "{", "const", "PileupRendererConfigSchema", "=", "pluginManager", ".", "getRendererType", "(", "'PileupRenderer'", ")", ".", "configSchema", ";", "const", "SvgFeatureRendererConfigSchema", "=", "pluginManager", ".", "getRendererType", "(", "'SvgFeatureRenderer'", ")", ".", "configSchema", ";", "return", "ConfigurationSchema", "(", "'LinearPileupDisplay'", ",", "{", "defaultRendering", ":", "{", "type", ":", "'stringEnum'", ",", "model", ":", "types", ".", "enumeration", "(", "'Rendering'", ",", "[", "'pileup'", ",", "'svg'", "]", ")", ",", "defaultValue", ":", "'pileup'", ",", "}", ",", "renderers", ":", "ConfigurationSchema", "(", "'RenderersConfiguration'", ",", "{", "PileupRenderer", ":", "PileupRendererConfigSchema", ",", "SvgFeatureRenderer", ":", "SvgFeatureRendererConfigSchema", ",", "}", ")", ",", "renderer", ":", "''", ",", "maxDisplayedBpPerPx", ":", "{", "type", ":", "'number'", ",", "description", ":", "'maximum bpPerPx that is displayed in the view'", ",", "defaultValue", ":", "100", ",", "}", ",", "colorScheme", ":", "{", "type", ":", "'stringEnum'", ",", "model", ":", "types", ".", "enumeration", "(", "'colorScheme'", ",", "[", "'strand'", ",", "'normal'", ",", "'insertSize'", ",", "'insertSizeAndOrientation'", ",", "'mappingQuality'", ",", "'tag'", ",", "]", ")", ",", "description", ":", "'color scheme to use'", ",", "defaultValue", ":", "'normal'", ",", "}", ",", "}", ",", "{", "baseConfiguration", ":", "linearBasicDisplayConfigSchemaFactory", "(", "pluginManager", ")", ",", "explicitlyTyped", ":", "true", ",", "}", ")", ";", "}", "export", "type", "LinearPileupDisplayConfigModel", "=", "ReturnType", "<", "typeof", "PileupConfigFactory", ">", ";", "export", "type", "LinearPileupDisplayConfig", "=", "Instance", "<", "LinearPileupDisplayConfigModel", ">", ";", "export", "default", "PileupConfigFactory", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660117
[ "import", "React", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "Typography", "from", "'@material-ui/core/Typography'", ";", "export", "interface", "LinearPileupDisplayBlurbProps", "{", "model", ":", "{", "sortedBy", "?", ":", "{", "pos", ":", "number", ";", "refName", ":", "number", ";", "type", ":", "string", ";", "}", ";", "}", ";", "}", "function", "LinearPileupDisplayBlurb", "(", "props", ")", "{", "const", "{", "model", "}", "=", "props", ";", "const", "{", "sortedBy", "}", "=", "model", ";", "return", "sortedBy", "?", "(", "<", "div", "data", "-", "testid", "=", "{", "`blurb-${", "model", ".", "sortedBy", "}`", "}", "style", "=", "{", "{", "backgroundColor", ":", "'white'", "}", "}", ">", "<", "Typography", "color", "=", "\"secondary\"", "variant", "=", "\"caption\"", ">", "{", "model", ".", "sortedBy", "?", "`Sorted by ${", "sortedBy", ".", "type", ".", "toLowerCase", "(", ")", "} at ${", "sortedBy", ".", "refName", "}:${", "sortedBy", ".", "pos", "}`", ":", "null", "}", "<", "/Typography>", "<", "/div>) : null;", "}", "export", "default", "observer", "(", "LinearPileupDisplayBlurb", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660118
[ "import", "{", "BlockSet", "}", "from", "'@jbrowse/core/util/blockTypes'", ";", "import", "{", "getSession", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "getRpcSessionId", "}", "from", "'@jbrowse/core/util/tracks'", ";", "import", "{", "IAnyStateTreeNode", "}", "from", "'mobx-state-tree'", ";", "import", "{", "AnyConfigurationModel", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "export", "async", "function", "getUniqueTagValues", "(", "self", ",", "colorScheme", ",", "blocks", ",", "opts", "?", ")", "{", "const", "{", "rpcManager", "}", "=", "getSession", "(", "self", ")", ";", "const", "{", "adapterConfig", "}", "=", "self", ";", "const", "sessionId", "=", "getRpcSessionId", "(", "self", ")", ";", "const", "values", "=", "await", "rpcManager", ".", "call", "(", "getRpcSessionId", "(", "self", ")", ",", "'PileupGetGlobalValueForTag'", ",", "{", "adapterConfig", ",", "tag", ":", "colorScheme", ".", "tag", ",", "sessionId", ",", "regions", ":", "blocks", ".", "contentBlocks", ",", "...", "opts", ",", "}", ")", ";", "return", "values", "as", "string", "[", "]", ";", "}", "export", "async", "function", "getUniqueModificationValues", "(", "self", ",", "adapterConfig", ",", "colorScheme", ",", "blocks", ",", "opts", "?", ")", "{", "const", "{", "rpcManager", "}", "=", "getSession", "(", "self", ")", ";", "const", "sessionId", "=", "getRpcSessionId", "(", "self", ")", ";", "const", "values", "=", "await", "rpcManager", ".", "call", "(", "sessionId", ",", "'PileupGetVisibleModifications'", ",", "{", "adapterConfig", ",", "tag", ":", "colorScheme", ".", "tag", ",", "sessionId", ",", "regions", ":", "blocks", ".", "contentBlocks", ",", "...", "opts", ",", "}", ")", ";", "return", "values", "as", "string", "[", "]", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 6, null, 0, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 9615, null, 6, null, 0, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660119
[ "import", "React", ",", "{", "useState", "}", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "Button", ",", "Dialog", ",", "DialogContent", ",", "DialogTitle", ",", "IconButton", ",", "TextField", ",", "Typography", ",", "makeStyles", ",", "}", "from", "'@material-ui/core'", ";", "import", "CloseIcon", "from", "'@material-ui/icons/Close'", ";", "const", "useStyles", "=", "makeStyles", "(", "theme", "=>", "(", "{", "root", ":", "{", "width", ":", "300", ",", "}", ",", "closeButton", ":", "{", "position", ":", "'absolute'", ",", "right", ":", "theme", ".", "spacing", "(", "1", ")", ",", "top", ":", "theme", ".", "spacing", "(", "1", ")", ",", "color", ":", "theme", ".", "palette", ".", "grey", "[", "500", "]", ",", "}", ",", "}", ")", ")", ";", "function", "ColorByTagDlg", "(", "props", ")", "{", "const", "classes", "=", "useStyles", "(", ")", ";", "const", "{", "model", ",", "handleClose", "}", "=", "props", ";", "const", "[", "tag", ",", "setTag", "]", "=", "useState", "(", "''", ")", ";", "const", "validTag", "=", "tag", ".", "match", "(", "/^[A-Za-z][A-Za-z0-9]$/", ")", ";", "return", "(", "<", "Dialog", "open", "onClose", "=", "{", "handleClose", "}", ">", "<", "DialogTitle", ">", "Color", "by", "tag", "<", "IconButton", "aria", "-", "label", "=", "\"close\"", "className", "=", "{", "classes", ".", "closeButton", "}", "onClick", "=", "{", "handleClose", "}", ">", "<", "CloseIcon", "/>", "<", "/IconButton>", "<", "/DialogTitle>", "<", "DialogContent", "style", "=", "{", "{", "overflowX", ":", "'hidden'", "}", "}", ">", "<", "div", "className", "=", "{", "classes", ".", "root", "}", ">", "<", "Typography", ">", "Enter", "tag", "to", "color", "by", ":", "<", "/Typography>", "<", "Typography", "color", "=", "\"textSecondary\"", ">", "Examples", ":", "XS", "or", "TS", "for", "RNA", "-", "seq", "inferred", "read", "strand", ",", "ts", "(", "lower", "-", "case", ")", "for", "minimap2", "read", "strand", ",", "HP", "for", "haplotype", ",", "RG", "for", "read", "group", ",", "etc", ".", "<", "/Typography>", "<", "TextField", "value", "=", "{", "tag", "}", "onChange", "=", "{", "event", "=>", "{", "setTag", "(", "event", ".", "target", ".", "value", ")", ";", "}", "}", "placeholder", "=", "\"Enter tag name\"", "inputProps", "=", "{", "{", "maxLength", ":", "2", ",", "'data-testid'", ":", "'color-tag-name-input'", ",", "}", "}", "error", "=", "{", "tag", ".", "length", "===", "2", "&&", "!", "validTag", "}", "helperText", "=", "{", "tag", ".", "length", "===", "2", "&&", "!", "validTag", "?", "'Not a valid tag'", ":", "''", "}", "autoComplete", "=", "\"off\"", "data", "-", "testid", "=", "\"color-tag-name\"", "/", ">", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"primary\"", "style", "=", "{", "{", "marginLeft", ":", "20", "}", "}", "onClick", "=", "{", "(", ")", "=>", "{", "model", ".", "setColorScheme", "(", "{", "type", ":", "'tag'", ",", "tag", ",", "}", ")", ";", "handleClose", "(", ")", ";", "}", "}", "disabled", "=", "{", "!", "validTag", "}", ">", "Submit", "<", "/Button>", "<", "/div>", "<", "/DialogContent>", "<", "/Dialog>);", "}", "export", "default", "observer", "(", "ColorByTagDlg", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 80, null, null, null, 73, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 6, null, null, null, 80, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 63, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660120
[ "import", "React", ",", "{", "useState", "}", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "Button", ",", "Dialog", ",", "DialogContent", ",", "DialogTitle", ",", "IconButton", ",", "Link", ",", "Paper", ",", "TextField", ",", "Typography", ",", "makeStyles", ",", "}", "from", "'@material-ui/core'", ";", "import", "CloseIcon", "from", "'@material-ui/icons/Close'", ";", "const", "useStyles", "=", "makeStyles", "(", "theme", "=>", "(", "{", "root", ":", "{", "width", ":", "500", ",", "}", ",", "paper", ":", "{", "padding", ":", "theme", ".", "spacing", "(", "2", ")", ",", "margin", ":", "theme", ".", "spacing", "(", "2", ")", ",", "}", ",", "closeButton", ":", "{", "position", ":", "'absolute'", ",", "right", ":", "theme", ".", "spacing", "(", "1", ")", ",", "top", ":", "theme", ".", "spacing", "(", "1", ")", ",", "color", ":", "theme", ".", "palette", ".", "grey", "[", "500", "]", ",", "}", ",", "field", ":", "{", "margin", ":", "theme", ".", "spacing", "(", "2", ")", ",", "}", ",", "}", ")", ")", ";", "const", "flagNames", "=", "[", "'read paired'", ",", "'read mapped in proper pair'", ",", "'read unmapped'", ",", "'mate unmapped'", ",", "'read reverse strand'", ",", "'mate reverse strand'", ",", "'first in pair'", ",", "'second in pair'", ",", "'not primary alignment'", ",", "'read fails platform/vendor quality checks'", ",", "'read is PCR or optical duplicate'", ",", "'supplementary alignment'", ",", "]", ";", "function", "Bitmask", "(", "props", ")", "{", "const", "{", "flag", "=", "0", ",", "setFlag", "}", "=", "props", ";", "return", "(", "<", ">", "<", "TextField", "type", "=", "\"number\"", "value", "=", "{", "flag", "}", "onChange", "=", "{", "event", "=>", "setFlag", "(", "+", "event", ".", "target", ".", "value", ")", "}", "/>", "{", "flagNames", ".", "map", "(", "(", "name", ",", "index", ")", "=>", "{", "const", "val", "=", "flag", "&", "(", "1", "<<", "index", ")", ";", "const", "key", "=", "`${", "name", "}_${", "val", "}`", ";", "return", "(", "<", "div", "key", "=", "{", "key", "}", ">", "<", "input", "type", "=", "\"checkbox\"", "checked", "=", "{", "Boolean", "(", "val", ")", "}", "onChange", "=", "{", "event", "=>", "{", "if", "(", "event", ".", "target", ".", "checked", ")", "{", "setFlag", "(", "flag", "|", "(", "1", "<<", "index", ")", ")", ";", "}", "else", "{", "setFlag", "(", "flag", "&", "~", "(", "1", "<<", "index", ")", ")", ";", "}", "}", "}", "/>", "<", "label", "htmlFor", "=", "{", "key", "}", ">", "{", "name", "}", "<", "/label>", "<", "/div>);", "}", ")", "}", "<", "/>);", "}", "function", "FilterByTagDlg", "(", "props", ")", "{", "const", "{", "model", ",", "handleClose", "}", "=", "props", ";", "const", "classes", "=", "useStyles", "(", ")", ";", "const", "{", "filterBy", "}", "=", "model", ";", "const", "[", "flagInclude", ",", "setFlagInclude", "]", "=", "useState", "(", "filterBy", "?.", "flagInclude", ")", ";", "const", "[", "flagExclude", ",", "setFlagExclude", "]", "=", "useState", "(", "filterBy", "?.", "flagExclude", ")", ";", "const", "[", "tag", ",", "setTag", "]", "=", "useState", "(", "filterBy", "?.", "tagFilter", "?.", "tag", "||", "''", ")", ";", "const", "[", "tagValue", ",", "setTagValue", "]", "=", "useState", "(", "filterBy", "?.", "tagFilter", "?.", "value", "||", "''", ")", ";", "const", "[", "readName", ",", "setReadName", "]", "=", "useState", "(", "filterBy", "?.", "readName", "||", "''", ")", ";", "const", "validTag", "=", "tag", ".", "match", "(", "/^[A-Za-z][A-Za-z0-9]$/", ")", ";", "const", "site", "=", "'https://broadinstitute.github.io/picard/explain-flags.html'", ";", "return", "(", "<", "Dialog", "open", "onClose", "=", "{", "handleClose", "}", ">", "<", "DialogTitle", ">", "Filter", "options", "<", "IconButton", "aria", "-", "label", "=", "\"close\"", "className", "=", "{", "classes", ".", "closeButton", "}", "onClick", "=", "{", "handleClose", "}", ">", "<", "CloseIcon", "/>", "<", "/IconButton>", "<", "/DialogTitle>", "<", "DialogContent", ">", "<", "Typography", ">", "Set", "filter", "bitmask", "options", ".", "Refer", "to", "<", "Link", "href", "=", "{", "site", "}", ">", "{", "site", "}", "<", "/Link>{' '}", "for", "details", "<", "/Typography>", "<", "div", "className", "=", "{", "classes", ".", "root", "}", ">", "<", "Paper", "className", "=", "{", "classes", ".", "paper", "}", "variant", "=", "\"outlined\"", ">", "<", "div", "style", "=", "{", "{", "display", ":", "'flex'", "}", "}", ">", "<", "div", ">", "<", "Typography", ">", "Read", "must", "have", "ALL", "these", "flags", "<", "/Typography>", "<", "Bitmask", "flag", "=", "{", "flagInclude", "}", "setFlag", "=", "{", "setFlagInclude", "}", "/", ">", "<", "/div>", "<", "div", ">", "<", "Typography", ">", "Read", "must", "have", "NONE", "of", "these", "flags", "<", "/Typography>", "<", "Bitmask", "flag", "=", "{", "flagExclude", "}", "setFlag", "=", "{", "setFlagExclude", "}", "/", ">", "<", "/div>", "<", "/div>", "<", "/Paper>", "<", "Paper", "className", "=", "{", "classes", ".", "paper", "}", "variant", "=", "\"outlined\"", ">", "<", "Typography", ">", "Filter", "by", "tag", "name", "and", "value", ".", "Use", "*", "in", "the", "value", "field", "to", "get", "all", "reads", "containing", "any", "value", "for", "that", "tag", ".", "Example", ":", "filter", "tag", "name", "SA", "with", "value", "*", "to", "get", "all", "split", "/", "supplementary", "reads", ".", "Other", "examples", "include", "HP", "for", "haplotype", ",", "or", "RG", "for", "read", "group", "<", "/Typography>", "<", "TextField", "className", "=", "{", "classes", ".", "field", "}", "value", "=", "{", "tag", "}", "onChange", "=", "{", "event", "=>", "{", "setTag", "(", "event", ".", "target", ".", "value", ")", ";", "}", "}", "placeholder", "=", "\"Enter tag name\"", "inputProps", "=", "{", "{", "maxLength", ":", "2", ",", "'data-testid'", ":", "'color-tag-name-input'", ",", "}", "}", "error", "=", "{", "tag", ".", "length", "===", "2", "&&", "!", "validTag", "}", "helperText", "=", "{", "tag", ".", "length", "===", "2", "&&", "!", "validTag", "?", "'Not a valid tag'", ":", "''", "}", "data", "-", "testid", "=", "\"color-tag-name\"", "/", ">", "<", "TextField", "className", "=", "{", "classes", ".", "field", "}", "value", "=", "{", "tagValue", "}", "onChange", "=", "{", "event", "=>", "{", "setTagValue", "(", "event", ".", "target", ".", "value", ")", ";", "}", "}", "placeholder", "=", "\"Enter tag value\"", "inputProps", "=", "{", "{", "'data-testid'", ":", "'color-tag-name-input'", ",", "}", "}", "data", "-", "testid", "=", "\"color-tag-value\"", "/", ">", "<", "/Paper>", "<", "Paper", "className", "=", "{", "classes", ".", "paper", "}", "variant", "=", "\"outlined\"", ">", "<", "Typography", ">", "Filter", "by", "read", "name", "<", "/Typography>", "<", "TextField", "className", "=", "{", "classes", ".", "field", "}", "value", "=", "{", "readName", "}", "onChange", "=", "{", "event", "=>", "{", "setReadName", "(", "event", ".", "target", ".", "value", ")", ";", "}", "}", "placeholder", "=", "\"Enter read name\"", "inputProps", "=", "{", "{", "'data-testid'", ":", "'color-tag-readname-input'", ",", "}", "}", "data", "-", "testid", "=", "\"color-tag-readname\"", "/", ">", "<", "/Paper>", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"primary\"", "onClick", "=", "{", "(", ")", "=>", "{", "model", ".", "setFilterBy", "(", "{", "flagInclude", ",", "flagExclude", ",", "readName", ",", "tagFilter", ":", "tag", "!==", "''", "?", "{", "tag", ",", "value", ":", "tagValue", ",", "}", ":", "undefined", ",", "}", ")", ";", "handleClose", "(", ")", ";", "}", "}", ">", "Submit", "<", "/Button>", "<", "/div>", "<", "/DialogContent>", "<", "/Dialog>);", "}", "export", "default", "observer", "(", "FilterByTagDlg", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 80, null, null, null, 73, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 64, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660121
[ "import", "React", ",", "{", "useState", "}", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "Button", ",", "Dialog", ",", "DialogContent", ",", "DialogTitle", ",", "IconButton", ",", "TextField", ",", "Typography", ",", "makeStyles", ",", "}", "from", "'@material-ui/core'", ";", "import", "CloseIcon", "from", "'@material-ui/icons/Close'", ";", "const", "useStyles", "=", "makeStyles", "(", "theme", "=>", "(", "{", "root", ":", "{", "margin", ":", "0", ",", "padding", ":", "theme", ".", "spacing", "(", "2", ")", ",", "}", ",", "closeButton", ":", "{", "position", ":", "'absolute'", ",", "right", ":", "theme", ".", "spacing", "(", "1", ")", ",", "top", ":", "theme", ".", "spacing", "(", "1", ")", ",", "color", ":", "theme", ".", "palette", ".", "grey", "[", "500", "]", ",", "}", ",", "}", ")", ")", ";", "function", "SortByTagDlg", "(", "props", ")", "{", "const", "classes", "=", "useStyles", "(", ")", ";", "const", "{", "model", ",", "handleClose", "}", "=", "props", ";", "const", "[", "tag", ",", "setTag", "]", "=", "useState", "(", "''", ")", ";", "const", "validTag", "=", "tag", ".", "match", "(", "/^[A-Za-z][A-Za-z0-9]$/", ")", ";", "return", "(", "<", "Dialog", "open", "onClose", "=", "{", "handleClose", "}", ">", "<", "DialogTitle", ">", "Sort", "by", "tag", "<", "IconButton", "aria", "-", "label", "=", "\"close\"", "className", "=", "{", "classes", ".", "closeButton", "}", "onClick", "=", "{", "handleClose", "}", ">", "<", "CloseIcon", "/>", "<", "/IconButton>", "<", "/DialogTitle>", "<", "DialogContent", ">", "<", "div", ">", "<", "Typography", ">", "Set", "the", "tag", "to", "sort", "by", "<", "/Typography>", "<", "Typography", "color", "=", "\"textSecondary\"", ">", "Examples", ":", "HP", "for", "haplotype", ",", "RG", "for", "read", "group", ",", "etc", ".", "<", "/Typography>", "<", "TextField", "value", "=", "{", "tag", "}", "onChange", "=", "{", "event", "=>", "{", "setTag", "(", "event", ".", "target", ".", "value", ")", ";", "}", "}", "placeholder", "=", "\"Enter tag name\"", "inputProps", "=", "{", "{", "maxLength", ":", "2", ",", "'data-testid'", ":", "'sort-tag-name-input'", ",", "}", "}", "error", "=", "{", "tag", ".", "length", "===", "2", "&&", "!", "validTag", "}", "helperText", "=", "{", "tag", ".", "length", "===", "2", "&&", "!", "validTag", "?", "'Not a valid tag'", ":", "''", "}", "autoComplete", "=", "\"off\"", "data", "-", "testid", "=", "\"sort-tag-name\"", "/", ">", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"primary\"", "onClick", "=", "{", "(", ")", "=>", "{", "model", ".", "setSortedBy", "(", "'tag'", ",", "tag", ")", ";", "handleClose", "(", ")", ";", "}", "}", ">", "Submit", "<", "/Button>", "<", "/div>", "<", "/DialogContent>", "<", "/Dialog>);", "}", "export", "default", "observer", "(", "SortByTagDlg", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 80, null, null, null, 73, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 6, null, null, null, 80, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 63, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660122
[ "import", "React", ",", "{", "useState", "}", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "Button", ",", "TextField", ",", "Typography", ",", "IconButton", ",", "Dialog", ",", "DialogContent", ",", "DialogTitle", ",", "Checkbox", ",", "FormControlLabel", ",", "makeStyles", ",", "}", "from", "'@material-ui/core'", ";", "import", "CloseIcon", "from", "'@material-ui/icons/Close'", ";", "const", "useStyles", "=", "makeStyles", "(", "theme", "=>", "(", "{", "root", ":", "{", "margin", ":", "theme", ".", "spacing", "(", "4", ")", ",", "}", ",", "closeButton", ":", "{", "position", ":", "'absolute'", ",", "right", ":", "theme", ".", "spacing", "(", "1", ")", ",", "top", ":", "theme", ".", "spacing", "(", "1", ")", ",", "color", ":", "theme", ".", "palette", ".", "grey", "[", "500", "]", ",", "}", ",", "}", ")", ")", ";", "function", "SetFeatureHeightDlg", "(", "props", ")", "{", "const", "classes", "=", "useStyles", "(", ")", ";", "const", "{", "model", ",", "handleClose", "}", "=", "props", ";", "const", "{", "featureHeightSetting", ",", "noSpacing", ":", "noSpacingSetting", "}", "=", "model", ";", "const", "[", "height", ",", "setHeight", "]", "=", "useState", "(", "`${", "featureHeightSetting", "}`", ")", ";", "const", "[", "noSpacing", ",", "setNoSpacing", "]", "=", "useState", "(", "noSpacingSetting", ")", ";", "const", "ok", "=", "height", "!==", "''", "&&", "!", "Number", ".", "isNaN", "(", "+", "height", ")", ";", "return", "(", "<", "Dialog", "open", "onClose", "=", "{", "handleClose", "}", ">", "<", "DialogTitle", ">", "Set", "feature", "height", "<", "IconButton", "className", "=", "{", "classes", ".", "closeButton", "}", "onClick", "=", "{", "handleClose", "}", ">", "<", "CloseIcon", "/>", "<", "/IconButton>", "<", "/DialogTitle>", "<", "DialogContent", ">", "<", "Typography", ">", "Adjust", "the", "feature", "height", "and", "whether", "there", "is", "any", "spacing", "between", "features", ".", "Setting", "feature", "height", "to", "1", "and", "removing", "spacing", "makes", "the", "display", "very", "compact", "<", "/Typography>", "<", "div", "className", "=", "{", "classes", ".", "root", "}", ">", "<", "Typography", ">", "Enter", "feature", "height", ":", "<", "/Typography>", "<", "TextField", "value", "=", "{", "height", "}", "onChange", "=", "{", "event", "=>", "{", "setHeight", "(", "event", ".", "target", ".", "value", ")", ";", "}", "}", "/>", "<", "FormControlLabel", "control", "=", "{", "<", "Checkbox", "checked", "=", "{", "!", "!", "noSpacing", "}", "onChange", "=", "{", "(", ")", "=>", "setNoSpacing", "(", "val", "=>", "!", "val", ")", "}", "/>} label=\"Remove spacing between features in y-direction?\"/", ">", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"primary\"", "type", "=", "\"submit\"", "style", "=", "{", "{", "marginLeft", ":", "20", "}", "}", "disabled", "=", "{", "!", "ok", "}", "onClick", "=", "{", "(", ")", "=>", "{", "model", ".", "setFeatureHeight", "(", "height", "!==", "''", "&&", "!", "Number", ".", "isNaN", "(", "+", "height", ")", "?", "+", "height", ":", "undefined", ")", ";", "model", ".", "setNoSpacing", "(", "noSpacing", ")", ";", "handleClose", "(", ")", ";", "}", "}", ">", "Submit", "<", "/Button>", "<", "/div>", "<", "/DialogContent>", "<", "/Dialog>);", "}", "export", "default", "observer", "(", "SetFeatureHeightDlg", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 80, null, null, null, 73, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 6, null, null, null, 80, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660123
[ "import", "React", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "ObservableMap", "}", "from", "'mobx'", ";", "import", "{", "Button", ",", "Dialog", ",", "DialogContent", ",", "DialogTitle", ",", "IconButton", ",", "Typography", ",", "CircularProgress", ",", "makeStyles", ",", "}", "from", "'@material-ui/core'", ";", "import", "CloseIcon", "from", "'@material-ui/icons/Close'", ";", "const", "useStyles", "=", "makeStyles", "(", "theme", "=>", "(", "{", "root", ":", "{", "}", ",", "closeButton", ":", "{", "position", ":", "'absolute'", ",", "right", ":", "theme", ".", "spacing", "(", "1", ")", ",", "top", ":", "theme", ".", "spacing", "(", "1", ")", ",", "color", ":", "theme", ".", "palette", ".", "grey", "[", "500", "]", ",", "}", ",", "table", ":", "{", "border", ":", "'1px solid #888'", ",", "margin", ":", "theme", ".", "spacing", "(", "4", ")", ",", "'& td'", ":", "{", "padding", ":", "theme", ".", "spacing", "(", "1", ")", ",", "}", ",", "}", ",", "}", ")", ")", ";", "function", "ModificationTable", "(", "{", "modifications", ",", "}", ")", "{", "const", "classes", "=", "useStyles", "(", ")", ";", "return", "(", "<", "table", "className", "=", "{", "classes", ".", "table", "}", ">", "<", "tbody", ">", "{", "modifications", ".", "map", "(", "(", "[", "key", ",", "value", "]", ")", "=>", "(", "<", "tr", "key", "=", "{", "key", "}", ">", "<", "td", ">", "{", "key", "}", "<", "/td>", "<", "td", ">", "{", "value", "}", "<", "/td>", "<", "td", "style", "=", "{", "{", "width", ":", "'1em'", ",", "background", ":", "value", ",", "}", "}", "/", ">", "<", "/tr>))}", "<", "/tbody>", "<", "/table>);", "}", "function", "ColorByTagDlg", "(", "props", ")", "{", "const", "classes", "=", "useStyles", "(", ")", ";", "const", "{", "model", ",", "handleClose", "}", "=", "props", ";", "const", "{", "colorBy", ",", "modificationTagMap", "}", "=", "model", ";", "const", "modifications", "=", "[", "...", "modificationTagMap", ".", "entries", "(", ")", "]", ";", "return", "(", "<", "Dialog", "open", "onClose", "=", "{", "handleClose", "}", ">", "<", "DialogTitle", ">", "Color", "by", "modifications", "<", "IconButton", "aria", "-", "label", "=", "\"close\"", "className", "=", "{", "classes", ".", "closeButton", "}", "onClick", "=", "{", "handleClose", "}", ">", "<", "CloseIcon", "/>", "<", "/IconButton>", "<", "/DialogTitle>", "<", "DialogContent", ">", "<", "div", "className", "=", "{", "classes", ".", "root", "}", ">", "<", "Typography", ">", "You", "can", "choose", "to", "color", "the", "modifications", "in", "the", "BAM", "/", "CRAM", "MM", "/", "ML", "specification", "using", "this", "dialog", ".", "Choosing", "modifications", "colors", "the", "modified", "positions", "and", "can", "color", "multiple", "modification", "types", ".", "Choosing", "the", "methylation", "setting", "colors", "methylated", "and", "unmethylated", "CpG", ".", "<", "/Typography>", "<", "Typography", ">", "Note", ":", "you", "can", "revisit", "this", "dialog", "to", "see", "the", "current", "mapping", "of", "colors", "to", "modification", "type", "for", "the", "modification", "coloring", "mode", "<", "/Typography>", "<", "div", "style", "=", "{", "{", "margin", ":", "20", "}", "}", ">", "{", "colorBy", "?.", "type", "===", "'modifications'", "?", "(", "<", "div", ">", "{", "modifications", ".", "length", "?", "(", "<", ">", "Current", "modification", "-", "type", "-", "to", "-", "color", "mapping", "<", "ModificationTable", "modifications", "=", "{", "[", "...", "modificationTagMap", ".", "entries", "(", ")", "]", "}", "/", ">", "<", "/>) : (<div>", "<", "Typography", ">", "Note", ":", "color", "by", "modifications", "is", "already", "enabled", ".", "Loading", "current", "modifications", "...", "<", "/Typography>", "<", "CircularProgress", "size", "=", "{", "15", "}", "/", ">", "<", "/div>)}", "<", "/div>) : null}", "{", "colorBy", "?.", "type", "===", "'methylation'", "?", "(", "<", "ModificationTable", "modifications", "=", "{", "[", "[", "'methylated'", ",", "'red'", "]", ",", "[", "'unmethylated'", ",", "'blue'", "]", ",", "]", "}", "/", ">", ")", ":", "null", "}", "<", "/div>", "<", "div", "style", "=", "{", "{", "display", ":", "'flex'", "}", "}", ">", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"primary\"", "style", "=", "{", "{", "margin", ":", "5", "}", "}", "onClick", "=", "{", "(", ")", "=>", "{", "model", ".", "setColorScheme", "(", "{", "type", ":", "'modifications'", ",", "}", ")", ";", "handleClose", "(", ")", ";", "}", "}", ">", "Modifications", "<", "/Button>", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"primary\"", "style", "=", "{", "{", "margin", ":", "5", "}", "}", "onClick", "=", "{", "(", ")", "=>", "{", "model", ".", "setColorScheme", "(", "{", "type", ":", "'methylation'", ",", "}", ")", ";", "handleClose", "(", ")", ";", "}", "}", ">", "Methylation", "<", "/Button>", "<", "Button", "variant", "=", "\"contained\"", "color", "=", "\"secondary\"", "style", "=", "{", "{", "margin", ":", "5", "}", "}", "onClick", "=", "{", "(", ")", "=>", "handleClose", "(", ")", "}", ">", "Cancel", "<", "/Button>", "<", "/div>", "<", "/div>", "<", "/DialogContent>", "<", "/Dialog>);", "}", "export", "default", "observer", "(", "ColorByTagDlg", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 80, null, null, null, 73, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660124
[ "import", "{", "lazy", "}", "from", "'react'", ";", "import", "{", "ConfigurationReference", ",", "readConfObject", ",", "getConf", ",", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "getRpcSessionId", "}", "from", "'@jbrowse/core/util/tracks'", ";", "import", "{", "getSession", ",", "isSessionModelWithWidgets", ",", "getContainingView", ",", "}", "from", "'@jbrowse/core/util'", ";", "import", "VisibilityIcon", "from", "'@material-ui/icons/Visibility'", ";", "import", "{", "ContentCopy", "as", "ContentCopyIcon", "}", "from", "'@jbrowse/core/ui/Icons'", ";", "import", "{", "LinearGenomeViewModel", ",", "BaseLinearDisplay", ",", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "import", "{", "cast", ",", "types", ",", "addDisposer", ",", "getEnv", ",", "Instance", "}", "from", "'mobx-state-tree'", ";", "import", "copy", "from", "'copy-to-clipboard'", ";", "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "MenuOpenIcon", "from", "'@material-ui/icons/MenuOpen'", ";", "import", "SortIcon", "from", "'@material-ui/icons/Sort'", ";", "import", "PaletteIcon", "from", "'@material-ui/icons/Palette'", ";", "import", "FilterListIcon", "from", "'@material-ui/icons/ClearAll'", ";", "import", "{", "autorun", ",", "observable", "}", "from", "'mobx'", ";", "import", "{", "AnyConfigurationModel", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "import", "SerializableFilterChain", "from", "'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'", ";", "import", "{", "LinearPileupDisplayConfigModel", "}", "from", "'./configSchema'", ";", "import", "LinearPileupDisplayBlurb", "from", "'./components/LinearPileupDisplayBlurb'", ";", "import", "{", "getUniqueTagValues", ",", "getUniqueModificationValues", "}", "from", "'../shared'", ";", "const", "ColorByTagDlg", "=", "lazy", "(", "(", ")", "=>", "import", "(", "'./components/ColorByTag'", ")", ")", ";", "const", "FilterByTagDlg", "=", "lazy", "(", "(", ")", "=>", "import", "(", "'./components/FilterByTag'", ")", ")", ";", "const", "SortByTagDlg", "=", "lazy", "(", "(", ")", "=>", "import", "(", "'./components/SortByTag'", ")", ")", ";", "const", "SetFeatureHeightDlg", "=", "lazy", "(", "(", ")", "=>", "import", "(", "'./components/SetFeatureHeight'", ")", ")", ";", "const", "SetMaxHeightDlg", "=", "lazy", "(", "(", ")", "=>", "import", "(", "'./components/SetMaxHeight'", ")", ")", ";", "const", "ModificationsDlg", "=", "lazy", "(", "(", ")", "=>", "import", "(", "'./components/ColorByModifications'", ")", ")", ";", "const", "rendererTypes", "=", "new", "Map", "(", "[", "[", "'pileup'", ",", "'PileupRenderer'", "]", ",", "[", "'svg'", ",", "'SvgFeatureRenderer'", "]", ",", "]", ")", ";", "type", "LGV", "=", "LinearGenomeViewModel", ";", "const", "stateModelFactory", "=", "(", "configSchema", ")", "=>", "types", ".", "compose", "(", "'LinearPileupDisplay'", ",", "BaseLinearDisplay", ",", "types", ".", "model", "(", "{", "type", ":", "types", ".", "literal", "(", "'LinearPileupDisplay'", ")", ",", "configuration", ":", "ConfigurationReference", "(", "configSchema", ")", ",", "showSoftClipping", ":", "false", ",", "featureHeight", ":", "types", ".", "maybe", "(", "types", ".", "number", ")", ",", "noSpacing", ":", "types", ".", "maybe", "(", "types", ".", "boolean", ")", ",", "fadeLikelihood", ":", "types", ".", "maybe", "(", "types", ".", "boolean", ")", ",", "trackMaxHeight", ":", "types", ".", "maybe", "(", "types", ".", "number", ")", ",", "mismatchAlpha", ":", "types", ".", "maybe", "(", "types", ".", "boolean", ")", ",", "sortedBy", ":", "types", ".", "maybe", "(", "types", ".", "model", "(", "{", "type", ":", "types", ".", "string", ",", "pos", ":", "types", ".", "number", ",", "tag", ":", "types", ".", "maybe", "(", "types", ".", "string", ")", ",", "refName", ":", "types", ".", "string", ",", "assemblyName", ":", "types", ".", "string", ",", "}", ")", ")", ",", "colorBy", ":", "types", ".", "maybe", "(", "types", ".", "model", "(", "{", "type", ":", "types", ".", "string", ",", "tag", ":", "types", ".", "maybe", "(", "types", ".", "string", ")", ",", "extra", ":", "types", ".", "frozen", "(", ")", ",", "}", ")", ")", ",", "filterBy", ":", "types", ".", "optional", "(", "types", ".", "model", "(", "{", "flagInclude", ":", "types", ".", "optional", "(", "types", ".", "number", ",", "0", ")", ",", "flagExclude", ":", "types", ".", "optional", "(", "types", ".", "number", ",", "1540", ")", ",", "readName", ":", "types", ".", "maybe", "(", "types", ".", "string", ")", ",", "tagFilter", ":", "types", ".", "maybe", "(", "types", ".", "model", "(", "{", "tag", ":", "types", ".", "string", ",", "value", ":", "types", ".", "string", "}", ")", ")", ",", "}", ")", ",", "{", "}", ")", ",", "}", ")", ")", ".", "volatile", "(", "(", ")", "=>", "(", "{", "colorTagMap", ":", "observable", ".", "map", "<", "string", ",", "string", ">", "(", "{", "}", ")", ",", "modificationTagMap", ":", "observable", ".", "map", "<", "string", ",", "string", ">", "(", "{", "}", ")", ",", "ready", ":", "false", ",", "currBpPerPx", ":", "0", ",", "}", ")", ")", ".", "actions", "(", "self", "=>", "(", "{", "setReady", "(", "flag", ")", "{", "self", ".", "ready", "=", "flag", ";", "}", ",", "setCurrBpPerPx", "(", "n", ")", "{", "self", ".", "currBpPerPx", "=", "n", ";", "}", ",", "setMaxHeight", "(", "n", ")", "{", "self", ".", "trackMaxHeight", "=", "n", ";", "}", ",", "setFeatureHeight", "(", "n", ")", "{", "self", ".", "featureHeight", "=", "n", ";", "}", ",", "setNoSpacing", "(", "flag", ")", "{", "self", ".", "noSpacing", "=", "flag", ";", "}", ",", "setColorScheme", "(", "colorScheme", ")", "{", "self", ".", "colorTagMap", "=", "observable", ".", "map", "(", "{", "}", ")", ";", "self", ".", "colorBy", "=", "cast", "(", "colorScheme", ")", ";", "self", ".", "ready", "=", "false", ";", "}", ",", "updateModificationColorMap", "(", "uniqueModifications", ")", "{", "const", "colorPalette", "=", "[", "'red'", ",", "'blue'", ",", "'green'", ",", "'orange'", ",", "'purple'", "]", ";", "uniqueModifications", ".", "forEach", "(", "value", "=>", "{", "if", "(", "!", "self", ".", "modificationTagMap", ".", "has", "(", "value", ")", ")", "{", "const", "totalKeys", "=", "[", "...", "self", ".", "modificationTagMap", ".", "keys", "(", ")", "]", ".", "length", ";", "const", "newColor", "=", "colorPalette", "[", "totalKeys", "]", ";", "self", ".", "modificationTagMap", ".", "set", "(", "value", ",", "newColor", ")", ";", "}", "}", ")", ";", "}", ",", "updateColorTagMap", "(", "uniqueTag", ")", "{", "const", "colorPalette", "=", "[", "'#BBCCEE'", ",", "'pink'", ",", "'#CCDDAA'", ",", "'#EEEEBB'", ",", "'#FFCCCC'", ",", "'lightblue'", ",", "'lightgreen'", ",", "'tan'", ",", "'#CCEEFF'", ",", "'lightsalmon'", ",", "]", ";", "uniqueTag", ".", "forEach", "(", "value", "=>", "{", "if", "(", "!", "self", ".", "colorTagMap", ".", "has", "(", "value", ")", ")", "{", "const", "totalKeys", "=", "[", "...", "self", ".", "colorTagMap", ".", "keys", "(", ")", "]", ".", "length", ";", "const", "newColor", "=", "colorPalette", "[", "totalKeys", "]", ";", "self", ".", "colorTagMap", ".", "set", "(", "value", ",", "newColor", ")", ";", "}", "}", ")", ";", "}", ",", "}", ")", ")", ".", "actions", "(", "self", "=>", "(", "{", "afterAttach", "(", ")", "{", "addDisposer", "(", "self", ",", "autorun", "(", "async", "(", ")", "=>", "{", "try", "{", "const", "{", "rpcManager", "}", "=", "getSession", "(", "self", ")", ";", "const", "{", "sortedBy", ",", "colorBy", "}", "=", "self", ";", "const", "view", "=", "getContainingView", "(", "self", ")", "as", "LGV", ";", "if", "(", "colorBy", "?.", "tag", ")", "{", "const", "uniqueTagSet", "=", "await", "getUniqueTagValues", "(", "self", ",", "colorBy", ",", "view", ".", "staticBlocks", ")", ";", "self", ".", "updateColorTagMap", "(", "uniqueTagSet", ")", ";", "}", "if", "(", "colorBy", "?.", "type", "===", "'modifications'", ")", "{", "const", "uniqueModificationsSet", "=", "await", "getUniqueModificationValues", "(", "self", ",", "getConf", "(", "self", ".", "parentTrack", ",", "[", "'adapter'", "]", ")", ",", "colorBy", ",", "view", ".", "staticBlocks", ")", ";", "self", ".", "updateModificationColorMap", "(", "uniqueModificationsSet", ")", ";", "}", "if", "(", "sortedBy", ")", "{", "const", "{", "pos", ",", "refName", ",", "assemblyName", "}", "=", "sortedBy", ";", "const", "region", "=", "{", "start", ":", "pos", ",", "end", ":", "pos", "+", "1", ",", "refName", ",", "assemblyName", ",", "}", ";", "await", "self", ".", "rendererType", ".", "renderInClient", "(", "rpcManager", ",", "{", "assemblyName", ",", "regions", ":", "[", "region", "]", ",", "adapterConfig", ":", "self", ".", "adapterConfig", ",", "rendererType", ":", "self", ".", "rendererType", ".", "name", ",", "sessionId", ":", "getRpcSessionId", "(", "self", ")", ",", "timeout", ":", "1000000", ",", "...", "self", ".", "renderProps", "(", ")", ",", "}", ")", ";", "self", ".", "setReady", "(", "true", ")", ";", "self", ".", "setCurrBpPerPx", "(", "view", ".", "bpPerPx", ")", ";", "}", "else", "{", "self", ".", "setReady", "(", "true", ")", ";", "}", "}", "catch", "(", "e", ")", "{", "console", ".", "error", "(", "e", ")", ";", "self", ".", "setError", "(", "e", ")", ";", "}", "}", ",", "{", "delay", ":", "1000", "}", ")", ")", ";", "}", ",", "selectFeature", "(", "feature", ")", "{", "const", "session", "=", "getSession", "(", "self", ")", ";", "if", "(", "isSessionModelWithWidgets", "(", "session", ")", ")", "{", "const", "featureWidget", "=", "session", ".", "addWidget", "(", "'AlignmentsFeatureWidget'", ",", "'alignmentFeature'", ",", "{", "featureData", ":", "feature", ".", "toJSON", "(", ")", ",", "view", ":", "getContainingView", "(", "self", ")", "}", ")", ";", "session", ".", "showWidget", "(", "featureWidget", ")", ";", "}", "session", ".", "setSelection", "(", "feature", ")", ";", "}", ",", "clearSelected", "(", ")", "{", "self", ".", "sortedBy", "=", "undefined", ";", "}", ",", "copyFeatureToClipboard", "(", "feature", ")", "{", "const", "{", "uniqueId", ",", "...", "rest", "}", "=", "feature", ".", "toJSON", "(", ")", ";", "const", "session", "=", "getSession", "(", "self", ")", ";", "copy", "(", "JSON", ".", "stringify", "(", "rest", ",", "null", ",", "4", ")", ")", ";", "session", ".", "notify", "(", "'Copied to clipboard'", ",", "'success'", ")", ";", "}", ",", "toggleSoftClipping", "(", ")", "{", "self", ".", "showSoftClipping", "=", "!", "self", ".", "showSoftClipping", ";", "}", ",", "toggleMismatchAlpha", "(", ")", "{", "self", ".", "mismatchAlpha", "=", "!", "self", ".", "mismatchAlpha", ";", "}", ",", "setConfig", "(", "configuration", ")", "{", "self", ".", "configuration", "=", "configuration", ";", "}", ",", "setSortedBy", "(", "type", ",", "tag", "?", ")", "{", "const", "{", "centerLineInfo", "}", "=", "getContainingView", "(", "self", ")", "as", "LGV", ";", "if", "(", "!", "centerLineInfo", ")", "{", "return", ";", "}", "const", "{", "refName", ",", "assemblyName", ",", "offset", "}", "=", "centerLineInfo", ";", "const", "centerBp", "=", "Math", ".", "round", "(", "offset", ")", "+", "1", ";", "const", "centerRefName", "=", "refName", ";", "if", "(", "centerBp", "<", "0", ")", "{", "return", ";", "}", "self", ".", "sortedBy", "=", "{", "type", ",", "pos", ":", "centerBp", ",", "refName", ":", "centerRefName", ",", "assemblyName", ",", "tag", ",", "}", ";", "self", ".", "ready", "=", "false", ";", "}", ",", "setFilterBy", "(", "filter", ")", "{", "self", ".", "filterBy", "=", "cast", "(", "filter", ")", ";", "}", ",", "}", ")", ")", ".", "actions", "(", "self", "=>", "{", "const", "superReload", "=", "self", ".", "reload", ";", "return", "{", "reload", "(", ")", "{", "self", ".", "clearSelected", "(", ")", ";", "superReload", "(", ")", ";", "}", ",", "}", ";", "}", ")", ".", "views", "(", "self", "=>", "(", "{", "get", "maxHeight", "(", ")", "{", "const", "conf", "=", "getConf", "(", "self", ",", "[", "'renderers'", ",", "self", ".", "rendererTypeName", "]", ")", "||", "{", "}", ";", "return", "self", ".", "trackMaxHeight", "!==", "undefined", "?", "self", ".", "trackMaxHeight", ":", "conf", ".", "maxHeight", ";", "}", ",", "get", "rendererConfig", "(", ")", "{", "const", "configBlob", "=", "getConf", "(", "self", ",", "[", "'renderers'", ",", "self", ".", "rendererTypeName", "]", ")", "||", "{", "}", ";", "return", "self", ".", "rendererType", ".", "configSchema", ".", "create", "(", "{", "...", "configBlob", ",", "height", ":", "self", ".", "featureHeight", ",", "noSpacing", ":", "self", ".", "noSpacing", ",", "maxHeight", ":", "this", ".", "maxHeight", ",", "mismatchAlpha", ":", "self", ".", "mismatchAlpha", ",", "}", ",", "getEnv", "(", "self", ")", ")", ";", "}", ",", "get", "featureHeightSetting", "(", ")", "{", "return", "(", "self", ".", "featureHeight", "||", "readConfObject", "(", "this", ".", "rendererConfig", ",", "'height'", ")", ")", ";", "}", ",", "get", "mismatchAlphaSetting", "(", ")", "{", "return", "self", ".", "mismatchAlpha", "!==", "undefined", "?", "self", ".", "mismatchAlpha", ":", "readConfObject", "(", "this", ".", "rendererConfig", ",", "'mismatchAlpha'", ")", ";", "}", ",", "}", ")", ")", ".", "views", "(", "self", "=>", "{", "const", "{", "trackMenuItems", ":", "superTrackMenuItems", ",", "renderProps", ":", "superRenderProps", ",", "}", "=", "self", ";", "return", "{", "get", "rendererTypeName", "(", ")", "{", "const", "viewName", "=", "getConf", "(", "self", ",", "'defaultRendering'", ")", ";", "const", "rendererType", "=", "rendererTypes", ".", "get", "(", "viewName", ")", ";", "if", "(", "!", "rendererType", ")", "{", "throw", "new", "Error", "(", "`unknown alignments view name ${", "viewName", "}`", ")", ";", "}", "return", "rendererType", ";", "}", ",", "contextMenuItems", "(", ")", "{", "const", "feat", "=", "self", ".", "contextMenuFeature", ";", "const", "contextMenuItems", "=", "feat", "?", "[", "{", "label", ":", "'Open feature details'", ",", "icon", ":", "MenuOpenIcon", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "clearFeatureSelection", "(", ")", ";", "if", "(", "feat", ")", "{", "self", ".", "selectFeature", "(", "feat", ")", ";", "}", "}", ",", "}", ",", "{", "label", ":", "'Copy info to clipboard'", ",", "icon", ":", "ContentCopyIcon", ",", "onClick", ":", "(", ")", "=>", "{", "if", "(", "feat", ")", "{", "self", ".", "copyFeatureToClipboard", "(", "feat", ")", ";", "}", "}", ",", "}", ",", "]", ":", "[", "]", ";", "return", "contextMenuItems", ";", "}", ",", "get", "DisplayBlurb", "(", ")", "{", "return", "LinearPileupDisplayBlurb", ";", "}", ",", "get", "filters", "(", ")", "{", "let", "filters", "=", "[", "]", ";", "const", "{", "flagInclude", ",", "flagExclude", ",", "tagFilter", ",", "readName", "}", "=", "self", ".", "filterBy", ";", "filters", "=", "[", "`jexl:((get(feature,'flags')&${", "flagInclude", "})==${", "flagInclude", "}) && !(get(feature,'flags')&${", "flagExclude", "})`", ",", "]", ";", "if", "(", "tagFilter", ")", "{", "const", "{", "tag", ",", "value", "}", "=", "tagFilter", ";", "filters", ".", "push", "(", "`jexl:\"${", "value", "}\" =='*' ? getTag(feature,\"${", "tag", "}\") != undefined : getTag(feature,\"${", "tag", "}\") == \"${", "value", "}\"`", ")", ";", "}", "if", "(", "readName", ")", "{", "filters", ".", "push", "(", "`jexl:get(feature,'name') == \"${", "readName", "}\"`", ")", ";", "}", "return", "new", "SerializableFilterChain", "(", "{", "filters", "}", ")", ";", "}", ",", "renderProps", "(", ")", "{", "const", "view", "=", "getContainingView", "(", "self", ")", "as", "LGV", ";", "const", "{", "ready", ",", "colorTagMap", ",", "modificationTagMap", ",", "sortedBy", ",", "colorBy", ",", "rpcDriverName", ",", "}", "=", "self", ";", "return", "{", "...", "superRenderProps", "(", ")", ",", "notReady", ":", "!", "ready", "||", "(", "sortedBy", "&&", "self", ".", "currBpPerPx", "!==", "view", ".", "bpPerPx", ")", ",", "rpcDriverName", ",", "displayModel", ":", "self", ",", "sortedBy", ",", "colorBy", ",", "colorTagMap", ":", "JSON", ".", "parse", "(", "JSON", ".", "stringify", "(", "colorTagMap", ")", ")", ",", "modificationTagMap", ":", "JSON", ".", "parse", "(", "JSON", ".", "stringify", "(", "modificationTagMap", ")", ")", ",", "filters", ":", "this", ".", "filters", ",", "showSoftClip", ":", "self", ".", "showSoftClipping", ",", "config", ":", "self", ".", "rendererConfig", ",", "}", ";", "}", ",", "trackMenuItems", "(", ")", "{", "return", "[", "...", "superTrackMenuItems", "(", ")", ",", "{", "label", ":", "'Show soft clipping'", ",", "icon", ":", "VisibilityIcon", ",", "type", ":", "'checkbox'", ",", "checked", ":", "self", ".", "showSoftClipping", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "toggleSoftClipping", "(", ")", ";", "if", "(", "self", ".", "showSoftClipping", ")", "{", "self", ".", "clearSelected", "(", ")", ";", "}", "}", ",", "}", ",", "{", "label", ":", "'Sort by'", ",", "icon", ":", "SortIcon", ",", "disabled", ":", "self", ".", "showSoftClipping", ",", "subMenu", ":", "[", "...", "[", "'Start location'", ",", "'Read strand'", ",", "'Base pair'", "]", ".", "map", "(", "option", "=>", "{", "return", "{", "label", ":", "option", ",", "onClick", ":", "(", ")", "=>", "self", ".", "setSortedBy", "(", "option", ")", ",", "}", ";", "}", ")", ",", "{", "label", ":", "'Sort by tag...'", ",", "onClick", ":", "(", ")", "=>", "{", "getSession", "(", "self", ")", ".", "queueDialog", "(", "(", "doneCallback", ")", "=>", "[", "SortByTagDlg", ",", "{", "model", ":", "self", ",", "handleClose", ":", "doneCallback", "}", ",", "]", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Clear sort'", ",", "onClick", ":", "(", ")", "=>", "self", ".", "clearSelected", "(", ")", ",", "}", ",", "]", ",", "}", ",", "{", "label", ":", "'Color scheme'", ",", "icon", ":", "PaletteIcon", ",", "subMenu", ":", "[", "{", "label", ":", "'Normal'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'normal'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Mapping quality'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'mappingQuality'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Strand'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'strand'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Pair orientation'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'pairOrientation'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Per-base quality'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'perBaseQuality'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Modifications or methylation'", ",", "onClick", ":", "(", ")", "=>", "{", "getSession", "(", "self", ")", ".", "queueDialog", "(", "(", "doneCallback", ")", "=>", "[", "ModificationsDlg", ",", "{", "model", ":", "self", ",", "handleClose", ":", "doneCallback", "}", ",", "]", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Insert size'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'insertSize'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Stranded paired-end'", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "setColorScheme", "(", "{", "type", ":", "'reverseTemplate'", "}", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Color by tag...'", ",", "onClick", ":", "(", ")", "=>", "{", "getSession", "(", "self", ")", ".", "queueDialog", "(", "(", "doneCallback", ")", "=>", "[", "ColorByTagDlg", ",", "{", "model", ":", "self", ",", "handleClose", ":", "doneCallback", "}", ",", "]", ")", ";", "}", ",", "}", ",", "]", ",", "}", ",", "{", "label", ":", "'Filter by'", ",", "icon", ":", "FilterListIcon", ",", "onClick", ":", "(", ")", "=>", "{", "getSession", "(", "self", ")", ".", "queueDialog", "(", "(", "doneCallback", ")", "=>", "[", "FilterByTagDlg", ",", "{", "model", ":", "self", ",", "handleClose", ":", "doneCallback", "}", ",", "]", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Set feature height'", ",", "onClick", ":", "(", ")", "=>", "{", "getSession", "(", "self", ")", ".", "queueDialog", "(", "(", "doneCallback", ")", "=>", "[", "SetFeatureHeightDlg", ",", "{", "model", ":", "self", ",", "handleClose", ":", "doneCallback", "}", ",", "]", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Set max height'", ",", "onClick", ":", "(", ")", "=>", "{", "getSession", "(", "self", ")", ".", "queueDialog", "(", "(", "doneCallback", ")", "=>", "[", "SetMaxHeightDlg", ",", "{", "model", ":", "self", ",", "handleClose", ":", "doneCallback", "}", ",", "]", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Fade mismatches by quality'", ",", "type", ":", "'checkbox'", ",", "checked", ":", "self", ".", "mismatchAlphaSetting", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "toggleMismatchAlpha", "(", ")", ";", "}", ",", "}", ",", "]", ";", "}", ",", "}", ";", "}", ")", ";", "export", "type", "LinearPileupDisplayStateModel", "=", "ReturnType", "<", "typeof", "stateModelFactory", ">", ";", "export", "type", "LinearPileupDisplayModel", "=", "Instance", "<", "LinearPileupDisplayStateModel", ">", ";", "export", "default", "stateModelFactory", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 643, null, null, null, null, null, null, null, null, null, null, null, null, null, 643, null, null, null, null, null, null, null, null, null, null, null, null, null, 643, null, null, null, null, null, null, null, null, null, null, null, null, null, 643, null, null, null, null, null, null, null, null, null, null, null, null, null, 643, null, null, null, null, null, null, null, null, null, null, null, null, null, 643, null, null, null, null, null, null, null, null, null, null, null, null, null, 19, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 731, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 8, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, 4, null, 8, null, null, null, null, null, null, null, null, null, null, 4, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 5, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 5, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 536, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, 4, null, 536, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 9615, null, null, null, null, null, null, null, null, null, null, 4, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 33, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660125
[ "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "export", "default", "(", "pluginManager", ")", "=>", "{", "const", "{", "types", "}", "=", "pluginManager", ".", "lib", "[", "'mobx-state-tree'", "]", ";", "return", "types", ".", "late", "(", "(", ")", "=>", "ConfigurationSchema", "(", "'CramAdapter'", ",", "{", "cramLocation", ":", "{", "type", ":", "'fileLocation'", ",", "defaultValue", ":", "{", "uri", ":", "'/path/to/my.cram'", ",", "locationType", ":", "'UriLocation'", ",", "}", ",", "}", ",", "craiLocation", ":", "{", "type", ":", "'fileLocation'", ",", "defaultValue", ":", "{", "uri", ":", "'/path/to/my.cram.crai'", ",", "locationType", ":", "'UriLocation'", ",", "}", ",", "}", ",", "sequenceAdapter", ":", "pluginManager", ".", "pluggableConfigSchemaType", "(", "'adapter'", ")", ",", "}", ",", "{", "explicitlyTyped", ":", "true", "}", ")", ")", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660126
[ "import", "{", "Feature", ",", "SimpleFeatureSerialized", ",", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "CramAdapter", "from", "'./CramAdapter'", ";", "export", "interface", "Mismatch", "{", "qual", "?", ":", "number", ";", "start", ":", "number", ";", "length", ":", "number", ";", "type", ":", "string", ";", "base", ":", "string", ";", "altbase", "?", ":", "string", ";", "seq", "?", ":", "string", ";", "cliplen", "?", ":", "number", ";", "}", "export", "default", "class", "CramSlightlyLazyFeature", "implements", "Feature", "{", "private", "_store", ":", "CramAdapter", ";", "constructor", "(", "private", "record", ",", "store", ")", "{", "this", ".", "_store", "=", "store", ";", "}", "_get_name", "(", ")", "{", "return", "this", ".", "record", ".", "readName", ";", "}", "_get_start", "(", ")", "{", "return", "this", ".", "record", ".", "alignmentStart", "-", "1", ";", "}", "_get_end", "(", ")", "{", "return", "this", ".", "record", ".", "alignmentStart", "+", "this", ".", "record", ".", "lengthOnRef", "-", "1", ";", "}", "_get_cram_read_features", "(", ")", "{", "return", "this", ".", "record", ".", "readFeatures", ";", "}", "_get_type", "(", ")", "{", "return", "'match'", ";", "}", "_get_score", "(", ")", "{", "return", "this", ".", "record", ".", "mappingQuality", ";", "}", "_get_flags", "(", ")", "{", "return", "this", ".", "record", ".", "flags", ";", "}", "_get_strand", "(", ")", "{", "return", "this", ".", "record", ".", "isReverseComplemented", "(", ")", "?", "-", "1", ":", "1", ";", "}", "_read_group_id", "(", ")", "{", "const", "rg", "=", "this", ".", "_store", ".", "samHeader", ".", "readGroups", ";", "return", "rg", "?", "rg", "[", "this", ".", "record", ".", "readGroupId", "]", ":", "undefined", ";", "}", "_get_qual", "(", ")", "{", "return", "(", "this", ".", "record", ".", "qualityScores", "||", "[", "]", ")", ".", "join", "(", "' '", ")", ";", "}", "qualRaw", "(", ")", "{", "return", "this", ".", "record", ".", "qualityScores", ";", "}", "_get_seq_id", "(", ")", "{", "return", "this", ".", "_store", ".", "refIdToName", "(", "this", ".", "record", ".", "sequenceId", ")", ";", "}", "_get_refName", "(", ")", "{", "return", "this", ".", "_get_seq_id", "(", ")", ";", "}", "_get_is_paired", "(", ")", "{", "return", "!", "!", "this", ".", "record", ".", "mate", ";", "}", "_get_pair_orientation", "(", ")", "{", "return", "this", ".", "record", ".", "isPaired", "(", ")", "?", "this", ".", "record", ".", "getPairOrientation", "(", ")", ":", "undefined", ";", "}", "_get_template_length", "(", ")", "{", "return", "this", ".", "record", ".", "templateLength", "||", "this", ".", "record", ".", "templateSize", ";", "}", "_get_next_seq_id", "(", ")", "{", "return", "this", ".", "record", ".", "mate", "?", "this", ".", "_store", ".", "refIdToName", "(", "this", ".", "record", ".", "mate", ".", "sequenceId", ")", ":", "undefined", ";", "}", "_get_next_pos", "(", ")", "{", "return", "this", ".", "record", ".", "mate", "?", "this", ".", "record", ".", "mate", ".", "alignmentStart", ":", "undefined", ";", "}", "_get_next_segment_position", "(", ")", "{", "return", "this", ".", "record", ".", "mate", "?", "`${", "this", ".", "_store", ".", "refIdToName", "(", "this", ".", "record", ".", "mate", ".", "sequenceId", ")", "}:${", "this", ".", "record", ".", "mate", ".", "alignmentStart", "}`", ":", "undefined", ";", "}", "_get_tags", "(", ")", "{", "const", "RG", "=", "this", ".", "_read_group_id", "(", ")", ";", "const", "{", "tags", "}", "=", "this", ".", "record", ";", "return", "RG", "!==", "undefined", "?", "{", "...", "tags", ",", "RG", "}", ":", "tags", ";", "}", "_get_seq", "(", ")", "{", "return", "this", ".", "record", ".", "getReadBases", "(", ")", ";", "}", "_get_CIGAR", "(", ")", "{", "let", "seq", "=", "''", ";", "let", "cigar", "=", "''", ";", "let", "op", "=", "'M'", ";", "let", "oplen", "=", "0", ";", "const", "ref", "=", "this", ".", "record", ".", "_refRegion", ".", "seq", ";", "const", "refStart", "=", "this", ".", "record", ".", "_refRegion", ".", "start", ";", "let", "last_pos", "=", "this", ".", "record", ".", "alignmentStart", ";", "let", "sublen", "=", "0", ";", "if", "(", "typeof", "this", ".", "record", ".", "readFeatures", "!==", "'undefined'", ")", "{", "this", ".", "record", ".", "readFeatures", ".", "forEach", "(", "(", "{", "code", ",", "refPos", ",", "sub", ",", "data", "}", ")", "=>", "{", "sublen", "=", "refPos", "-", "last_pos", ";", "seq", "+=", "ref", ".", "substring", "(", "last_pos", "-", "refStart", ",", "refPos", "-", "refStart", ")", ";", "last_pos", "=", "refPos", ";", "if", "(", "oplen", "&&", "op", "!==", "'M'", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "oplen", "=", "0", ";", "}", "if", "(", "sublen", ")", "{", "op", "=", "'M'", ";", "oplen", "+=", "sublen", ";", "}", "if", "(", "code", "===", "'b'", ")", "{", "const", "ret", "=", "data", ".", "split", "(", "','", ")", ";", "const", "added", "=", "String", ".", "fromCharCode", "(", "...", "ret", ")", ";", "seq", "+=", "added", ";", "last_pos", "+=", "added", ".", "length", ";", "oplen", "+=", "added", ".", "length", ";", "}", "else", "if", "(", "code", "===", "'B'", ")", "{", "seq", "+=", "sub", ";", "last_pos", "++", ";", "oplen", "++", ";", "}", "else", "if", "(", "code", "===", "'X'", ")", "{", "seq", "+=", "sub", ";", "last_pos", "++", ";", "oplen", "++", ";", "}", "else", "if", "(", "code", "===", "'D'", "||", "code", "===", "'N'", ")", "{", "last_pos", "+=", "data", ";", "if", "(", "oplen", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "}", "cigar", "+=", "data", "+", "code", ";", "oplen", "=", "0", ";", "}", "else", "if", "(", "code", "===", "'I'", "||", "code", "===", "'S'", ")", "{", "seq", "+=", "data", ";", "if", "(", "oplen", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "}", "cigar", "+=", "data", ".", "length", "+", "code", ";", "oplen", "=", "0", ";", "}", "else", "if", "(", "code", "===", "'i'", ")", "{", "seq", "+=", "data", ";", "if", "(", "oplen", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "}", "cigar", "+=", "`${", "1", "}I`", ";", "oplen", "=", "0", ";", "}", "else", "if", "(", "code", "===", "'P'", ")", "{", "if", "(", "oplen", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "}", "cigar", "+=", "`${", "data", "}P`", ";", "}", "else", "if", "(", "code", "===", "'H'", ")", "{", "if", "(", "oplen", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "}", "cigar", "+=", "`${", "data", "}H`", ";", "oplen", "=", "0", ";", "}", "}", ")", ";", "}", "else", "{", "sublen", "=", "this", ".", "record", ".", "readLength", "-", "seq", ".", "length", ";", "}", "if", "(", "seq", ".", "length", "!==", "this", ".", "record", ".", "readLength", ")", "{", "sublen", "=", "this", ".", "record", ".", "readLength", "-", "seq", ".", "length", ";", "seq", "+=", "ref", ".", "substring", "(", "last_pos", "-", "refStart", ",", "last_pos", "-", "refStart", "+", "sublen", ")", ";", "if", "(", "oplen", "&&", "op", "!==", "'M'", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "oplen", "=", "0", ";", "}", "op", "=", "'M'", ";", "oplen", "+=", "sublen", ";", "}", "if", "(", "oplen", ")", "{", "cigar", "+=", "oplen", "+", "op", ";", "}", "return", "cigar", ";", "}", "tags", "(", ")", "{", "const", "properties", "=", "Object", ".", "getOwnPropertyNames", "(", "CramSlightlyLazyFeature", ".", "prototype", ")", ";", "return", "properties", ".", "filter", "(", "prop", "=>", "prop", ".", "startsWith", "(", "'_get_'", ")", "&&", "prop", "!==", "'_get_mismatches'", "&&", "prop", "!==", "'_get_skips_and_dels'", "&&", "prop", "!==", "'_get_cram_read_features'", ")", ".", "map", "(", "methodName", "=>", "methodName", ".", "replace", "(", "'_get_'", ",", "''", ")", ")", ";", "}", "id", "(", ")", "{", "return", "`${", "this", ".", "_store", ".", "id", "}-${", "this", ".", "record", ".", "uniqueId", "}`", ";", "}", "get", "(", "field", ")", "{", "const", "methodName", "=", "`_get_${", "field", "}`", ";", "if", "(", "this", "[", "methodName", "]", ")", "{", "return", "this", "[", "methodName", "]", "(", ")", ";", "}", "return", "undefined", ";", "}", "parent", "(", ")", "{", "return", "undefined", ";", "}", "children", "(", ")", "{", "return", "undefined", ";", "}", "set", "(", ")", "{", "}", "pairedFeature", "(", ")", "{", "return", "false", ";", "}", "_get_clipPos", "(", ")", "{", "const", "mismatches", "=", "this", ".", "get", "(", "'mismatches'", ")", ";", "if", "(", "mismatches", ".", "length", ")", "{", "const", "record", "=", "this", ".", "get", "(", "'strand'", ")", "===", "-", "1", "?", "mismatches", "[", "mismatches", ".", "length", "-", "1", "]", ":", "mismatches", "[", "0", "]", ";", "const", "{", "type", ",", "cliplen", "}", "=", "record", ";", "if", "(", "type", "===", "'softclip'", "||", "type", "===", "'hardclip'", ")", "{", "return", "cliplen", ";", "}", "}", "return", "0", ";", "}", "toJSON", "(", ")", "{", "const", "tags", "=", "{", "}", ";", "this", ".", "tags", "(", ")", ".", "forEach", "(", "(", "t", ")", "=>", "{", "const", "val", "=", "this", ".", "get", "(", "t", ")", ";", "if", "(", "val", "!==", "undefined", ")", "{", "tags", "[", "t", "]", "=", "val", ";", "}", "}", ")", ";", "return", "{", "...", "tags", ",", "name", ":", "this", ".", "get", "(", "'name'", ")", ",", "type", ":", "this", ".", "get", "(", "'type'", ")", ",", "uniqueId", ":", "this", ".", "id", "(", ")", ",", "}", ";", "}", "_get_mismatches", "(", ")", "{", "const", "readFeatures", "=", "this", ".", "get", "(", "'cram_read_features'", ")", ";", "const", "qual", "=", "this", ".", "qualRaw", "(", ")", ";", "if", "(", "!", "readFeatures", ")", "{", "return", "[", "]", ";", "}", "const", "start", "=", "this", ".", "get", "(", "'start'", ")", ";", "const", "mismatches", "=", "[", "]", ";", "readFeatures", ".", "forEach", "(", "(", "args", ")", "=>", "{", "const", "{", "code", ",", "pos", ",", "data", ",", "sub", ",", "ref", "}", "=", "args", ";", "const", "refPos", "=", "args", ".", "refPos", "-", "1", "-", "start", ";", "if", "(", "code", "===", "'X'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "refPos", ",", "length", ":", "1", ",", "base", ":", "sub", ",", "qual", ":", "qual", "?.", "[", "pos", "]", ",", "altbase", ":", "ref", ",", "type", ":", "'mismatch'", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'I'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "refPos", ",", "type", ":", "'insertion'", ",", "base", ":", "`${", "data", ".", "length", "}`", ",", "length", ":", "0", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'N'", ")", "{", "mismatches", ".", "push", "(", "{", "type", ":", "'skip'", ",", "length", ":", "data", ",", "start", ":", "refPos", ",", "base", ":", "'N'", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'S'", ")", "{", "const", "len", "=", "data", ".", "length", ";", "mismatches", ".", "push", "(", "{", "start", ":", "refPos", ",", "type", ":", "'softclip'", ",", "base", ":", "`S${", "len", "}`", ",", "cliplen", ":", "len", ",", "length", ":", "1", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'P'", ")", "{", "}", "else", "if", "(", "code", "===", "'H'", ")", "{", "const", "len", "=", "data", ";", "mismatches", ".", "push", "(", "{", "start", ":", "refPos", ",", "type", ":", "'hardclip'", ",", "base", ":", "`H${", "len", "}`", ",", "cliplen", ":", "len", ",", "length", ":", "1", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'D'", ")", "{", "mismatches", ".", "push", "(", "{", "type", ":", "'deletion'", ",", "length", ":", "data", ",", "start", ":", "refPos", ",", "base", ":", "'*'", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'b'", ")", "{", "}", "else", "if", "(", "code", "===", "'q'", ")", "{", "}", "else", "if", "(", "code", "===", "'B'", ")", "{", "}", "else", "if", "(", "code", "===", "'i'", ")", "{", "mismatches", ".", "push", "(", "{", "start", ":", "refPos", ",", "type", ":", "'insertion'", ",", "base", ":", "data", ",", "length", ":", "1", ",", "}", ")", ";", "}", "else", "if", "(", "code", "===", "'Q'", ")", "{", "}", "}", ")", ";", "return", "mismatches", ";", "}", "_get_skips_and_dels", "(", ")", "{", "return", "this", ".", "_get_mismatches", "(", ")", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, 17, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null ]
660127
[ "import", "{", "CraiIndex", ",", "IndexedCramFile", "}", "from", "'@gmod/cram'", ";", "import", "{", "BaseFeatureDataAdapter", ",", "BaseOptions", ",", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "import", "{", "Region", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "{", "checkAbortSignal", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "openLocation", "}", "from", "'@jbrowse/core/util/io'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "ObservableCreate", "}", "from", "'@jbrowse/core/util/rxjs'", ";", "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "CramSlightlyLazyFeature", "from", "'./CramSlightlyLazyFeature'", ";", "interface", "HeaderLine", "{", "tag", ":", "string", ";", "value", ":", "any", ";", "data", ":", "HeaderLine", "[", "]", ";", "}", "interface", "Header", "{", "idToName", "?", ":", "string", "[", "]", ";", "nameToId", "?", ":", "Record", "<", "string", ",", "number", ">", ";", "readGroups", "?", ":", "number", "[", "]", ";", "}", "export", "default", "class", "CramAdapter", "extends", "BaseFeatureDataAdapter", "{", "private", "cram", ":", "any", ";", "private", "setupP", "?", ":", "Promise", "<", "Header", ">", ";", "private", "sequenceAdapter", "?", ":", "BaseFeatureDataAdapter", ";", "public", "samHeader", ":", "Header", "=", "{", "}", ";", "private", "seqIdToRefName", ":", "string", "[", "]", "|", "undefined", ";", "private", "seqIdToOriginalRefName", ":", "string", "[", "]", "=", "[", "]", ";", "public", "async", "configure", "(", ")", "{", "const", "cramLocation", "=", "readConfObject", "(", "this", ".", "config", ",", "'cramLocation'", ")", ";", "const", "craiLocation", "=", "readConfObject", "(", "this", ".", "config", ",", "'craiLocation'", ")", ";", "if", "(", "!", "cramLocation", ")", "{", "throw", "new", "Error", "(", "'missing cramLocation argument'", ")", ";", "}", "if", "(", "!", "craiLocation", ")", "{", "throw", "new", "Error", "(", "'missing craiLocation argument'", ")", ";", "}", "this", ".", "cram", "=", "new", "IndexedCramFile", "(", "{", "cramFilehandle", ":", "openLocation", "(", "cramLocation", ",", "this", ".", "pluginManager", ")", ",", "index", ":", "new", "CraiIndex", "(", "{", "filehandle", ":", "openLocation", "(", "craiLocation", ",", "this", ".", "pluginManager", ")", ",", "}", ")", ",", "seqFetch", ":", "this", ".", "seqFetch", ".", "bind", "(", "this", ")", ",", "checkSequenceMD5", ":", "false", ",", "fetchSizeLimit", ":", "this", ".", "config", ".", "fetchSizeLimit", "||", "600000000", ",", "}", ")", ";", "const", "sequenceAdapterType", "=", "readConfObject", "(", "this", ".", "config", ",", "[", "'sequenceAdapter'", ",", "'type'", ",", "]", ")", ";", "if", "(", "!", "this", ".", "getSubAdapter", ")", "{", "throw", "new", "Error", "(", "'Error getting subadapter'", ")", ";", "}", "const", "{", "dataAdapter", "}", "=", "await", "this", ".", "getSubAdapter", "(", "readConfObject", "(", "this", ".", "config", ",", "'sequenceAdapter'", ")", ")", ";", "if", "(", "dataAdapter", "instanceof", "BaseFeatureDataAdapter", ")", "{", "this", ".", "sequenceAdapter", "=", "dataAdapter", ";", "}", "else", "{", "throw", "new", "Error", "(", "`CRAM feature adapters cannot use sequence adapters of type '${", "sequenceAdapterType", "}'`", ")", ";", "}", "return", "{", "sequenceAdapter", ":", "this", ".", "sequenceAdapter", "}", ";", "}", "async", "getHeader", "(", "opts", "?", ")", "{", "await", "this", ".", "configure", "(", ")", ";", "return", "this", ".", "cram", ".", "cram", ".", "getHeaderText", "(", "opts", ")", ";", "}", "private", "async", "seqFetch", "(", "seqId", ",", "start", ",", "end", ")", "{", "start", "-=", "1", ";", "const", "refSeqStore", "=", "this", ".", "sequenceAdapter", ";", "if", "(", "!", "refSeqStore", ")", "{", "return", "undefined", ";", "}", "const", "refName", "=", "this", ".", "refIdToOriginalName", "(", "seqId", ")", "||", "this", ".", "refIdToName", "(", "seqId", ")", ";", "if", "(", "!", "refName", ")", "{", "return", "undefined", ";", "}", "const", "features", "=", "refSeqStore", ".", "getFeatures", "(", "{", "refName", ",", "start", ",", "end", ",", "assemblyName", ":", "''", ",", "}", ",", "{", "}", ")", ";", "const", "seqChunks", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "trimmed", "=", "[", "]", ";", "seqChunks", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "get", "(", "'start'", ")", "-", "b", ".", "get", "(", "'start'", ")", ")", ".", "forEach", "(", "(", "chunk", ")", "=>", "{", "const", "chunkStart", "=", "chunk", ".", "get", "(", "'start'", ")", ";", "const", "chunkEnd", "=", "chunk", ".", "get", "(", "'end'", ")", ";", "const", "trimStart", "=", "Math", ".", "max", "(", "start", "-", "chunkStart", ",", "0", ")", ";", "const", "trimEnd", "=", "Math", ".", "min", "(", "end", "-", "chunkStart", ",", "chunkEnd", "-", "chunkStart", ")", ";", "const", "trimLength", "=", "trimEnd", "-", "trimStart", ";", "const", "chunkSeq", "=", "chunk", ".", "get", "(", "'seq'", ")", "||", "chunk", ".", "get", "(", "'residues'", ")", ";", "trimmed", ".", "push", "(", "chunkSeq", ".", "substr", "(", "trimStart", ",", "trimLength", ")", ")", ";", "}", ")", ";", "const", "sequence", "=", "trimmed", ".", "join", "(", "''", ")", ";", "if", "(", "sequence", ".", "length", "!==", "end", "-", "start", ")", "{", "throw", "new", "Error", "(", "`sequence fetch failed: fetching ${", "refName", "}:${", "(", "start", "-", "1", ")", ".", "toLocaleString", "(", ")", "}-${", "end", ".", "toLocaleString", "(", ")", "} returned ${", "sequence", ".", "length", ".", "toLocaleString", "(", ")", "} bases, but should have returned ${", "(", "end", "-", "start", ")", ".", "toLocaleString", "(", ")", "}`", ")", ";", "}", "return", "sequence", ";", "}", "private", "async", "setup", "(", "opts", "?", ")", "{", "const", "{", "statusCallback", "=", "(", ")", "=>", "{", "}", "}", "=", "opts", "||", "{", "}", ";", "if", "(", "!", "this", ".", "setupP", ")", "{", "this", ".", "setupP", "=", "this", ".", "configure", "(", ")", ".", "then", "(", "async", "(", ")", "=>", "{", "statusCallback", "(", "'Downloading index'", ")", ";", "const", "samHeader", "=", "await", "this", ".", "cram", ".", "cram", ".", "getSamHeader", "(", "opts", "?.", "signal", ")", ";", "const", "idToName", "=", "[", "]", ";", "const", "nameToId", "=", "{", "}", ";", "samHeader", ".", "filter", "(", "l", "=>", "l", ".", "tag", "===", "'SQ'", ")", ".", "forEach", "(", "(", "sqLine", ",", "refId", ")", "=>", "{", "sqLine", ".", "data", ".", "forEach", "(", "item", "=>", "{", "if", "(", "item", ".", "tag", "===", "'SN'", ")", "{", "const", "refName", "=", "item", ".", "value", ";", "nameToId", "[", "refName", "]", "=", "refId", ";", "idToName", "[", "refId", "]", "=", "refName", ";", "}", "}", ")", ";", "}", ")", ";", "const", "readGroups", "=", "samHeader", ".", "filter", "(", "l", "=>", "l", ".", "tag", "===", "'RG'", ")", ".", "map", "(", "rgLine", "=>", "rgLine", ".", "data", ".", "find", "(", "item", "=>", "item", ".", "tag", "===", "'ID'", ")", "?.", "value", ")", ";", "if", "(", "idToName", ".", "length", ")", "{", "this", ".", "samHeader", "=", "{", "idToName", ",", "nameToId", ",", "readGroups", "}", ";", "}", "statusCallback", "(", "''", ")", ";", "return", "this", ".", "samHeader", ";", "}", ")", ".", "catch", "(", "e", "=>", "{", "this", ".", "setupP", "=", "undefined", ";", "throw", "e", ";", "}", ")", ";", "}", "return", "this", ".", "setupP", ";", "}", "async", "getRefNames", "(", "opts", "?", ")", "{", "await", "this", ".", "setup", "(", "opts", ")", ";", "if", "(", "this", ".", "samHeader", ".", "idToName", ")", "{", "return", "this", ".", "samHeader", ".", "idToName", ";", "}", "if", "(", "this", ".", "sequenceAdapter", ")", "{", "return", "this", ".", "sequenceAdapter", ".", "getRefNames", "(", ")", ";", "}", "throw", "new", "Error", "(", "'unable to get refnames'", ")", ";", "}", "refNameToId", "(", "refName", ")", "{", "if", "(", "this", ".", "samHeader", ".", "nameToId", ")", "{", "return", "this", ".", "samHeader", ".", "nameToId", "[", "refName", "]", ";", "}", "if", "(", "this", ".", "seqIdToRefName", ")", "{", "return", "this", ".", "seqIdToRefName", ".", "indexOf", "(", "refName", ")", ";", "}", "return", "undefined", ";", "}", "refIdToName", "(", "refId", ")", "{", "if", "(", "this", ".", "samHeader", ".", "idToName", ")", "{", "return", "this", ".", "samHeader", ".", "idToName", "[", "refId", "]", ";", "}", "if", "(", "this", ".", "seqIdToRefName", ")", "{", "return", "this", ".", "seqIdToRefName", "[", "refId", "]", ";", "}", "return", "undefined", ";", "}", "refIdToOriginalName", "(", "refId", ")", "{", "return", "this", ".", "seqIdToOriginalRefName", "[", "refId", "]", ";", "}", "getFeatures", "(", "region", ",", "opts", "?", ")", "{", "const", "{", "signal", ",", "statusCallback", "=", "(", ")", "=>", "{", "}", "}", "=", "opts", "||", "{", "}", ";", "const", "{", "refName", ",", "start", ",", "end", ",", "originalRefName", "}", "=", "region", ";", "return", "ObservableCreate", "<", "Feature", ">", "(", "async", "(", "observer", ")", "=>", "{", "await", "this", ".", "setup", "(", "opts", ")", ";", "if", "(", "this", ".", "sequenceAdapter", "&&", "!", "this", ".", "seqIdToRefName", ")", "{", "this", ".", "seqIdToRefName", "=", "await", "this", ".", "sequenceAdapter", ".", "getRefNames", "(", "opts", ")", ";", "}", "const", "refId", "=", "this", ".", "refNameToId", "(", "refName", ")", ";", "if", "(", "refId", "!==", "undefined", ")", "{", "if", "(", "originalRefName", ")", "{", "this", ".", "seqIdToOriginalRefName", "[", "refId", "]", "=", "originalRefName", ";", "}", "statusCallback", "(", "'Downloading alignments'", ")", ";", "const", "records", "=", "await", "this", ".", "cram", ".", "getRecordsForRange", "(", "refId", ",", "start", ",", "end", ",", "opts", ")", ";", "checkAbortSignal", "(", "signal", ")", ";", "records", ".", "forEach", "(", "(", "record", ")", "=>", "{", "observer", ".", "next", "(", "this", ".", "cramRecordToFeature", "(", "record", ")", ")", ";", "}", ")", ";", "}", "statusCallback", "(", "''", ")", ";", "observer", ".", "complete", "(", ")", ";", "}", ",", "signal", ")", ";", "}", "freeResources", "(", ")", "{", "}", "cramRecordToFeature", "(", "record", ")", "{", "return", "new", "CramSlightlyLazyFeature", "(", "record", ",", "this", ")", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 3, null, 3, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 536, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, 17, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, 0, null, 3, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, 536, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660128
[ "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "AdapterType", "from", "'@jbrowse/core/pluggableElementTypes/AdapterType'", ";", "import", "configSchemaF", "from", "'./configSchema'", ";", "export", "default", "(", "pluginManager", ")", "=>", "{", "pluginManager", ".", "addAdapterType", "(", "(", ")", "=>", "new", "AdapterType", "(", "{", "name", ":", "'CramAdapter'", ",", "configSchema", ":", "pluginManager", ".", "load", "(", "configSchemaF", ")", ",", "getAdapterClass", ":", "(", ")", "=>", "import", "(", "'./CramAdapter'", ")", ".", "then", "(", "r", "=>", "r", ".", "default", ")", ",", "}", ")", ")", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null ]
660129
[ "import", "{", "Feature", ",", "SimpleFeatureSerialized", ",", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "BamRecord", "}", "from", "'@gmod/bam'", ";", "import", "{", "parseCigar", ",", "generateMD", ",", "cigarToMismatches", ",", "mdToMismatches", ",", "Mismatch", ",", "}", "from", "'./MismatchParser'", ";", "import", "BamAdapter", "from", "'./BamAdapter'", ";", "export", "default", "class", "BamSlightlyLazyFeature", "implements", "Feature", "{", "constructor", "(", "private", "record", ",", "private", "adapter", ",", "private", "ref", "?", ")", "{", "}", "_get_name", "(", ")", "{", "return", "this", ".", "record", ".", "get", "(", "'name'", ")", ";", "}", "_get_type", "(", ")", "{", "return", "'match'", ";", "}", "_get_score", "(", ")", "{", "return", "this", ".", "record", ".", "get", "(", "'mq'", ")", ";", "}", "_get_flags", "(", ")", "{", "return", "this", ".", "record", ".", "flags", ";", "}", "_get_strand", "(", ")", "{", "return", "this", ".", "record", ".", "isReverseComplemented", "(", ")", "?", "-", "1", ":", "1", ";", "}", "_get_read_group_id", "(", ")", "{", "return", "this", ".", "record", ".", "readGroupId", ";", "}", "_get_pair_orientation", "(", ")", "{", "return", "this", ".", "record", ".", "isPaired", "(", ")", "?", "this", ".", "record", ".", "getPairOrientation", "(", ")", ":", "undefined", ";", "}", "_get_next_seq_id", "(", ")", "{", "return", "this", ".", "record", ".", "_next_refid", "(", ")", ";", "}", "_get_seq_id", "(", ")", "{", "return", "this", ".", "record", ".", "_refID", ";", "}", "_get_next_refName", "(", ")", "{", "return", "this", ".", "adapter", ".", "refIdToName", "(", "this", ".", "record", ".", "_next_refid", "(", ")", ")", ";", "}", "_get_next_segment_position", "(", ")", "{", "return", "this", ".", "record", ".", "isPaired", "(", ")", "?", "`${", "this", ".", "adapter", ".", "refIdToName", "(", "this", ".", "record", ".", "_next_refid", "(", ")", ")", "}:${", "this", ".", "record", ".", "_next_pos", "(", ")", "+", "1", "}`", ":", "undefined", ";", "}", "_get_seq", "(", ")", "{", "return", "this", ".", "record", ".", "getReadBases", "(", ")", ";", "}", "_get_MD", "(", ")", "{", "const", "md", "=", "this", ".", "record", ".", "get", "(", "'MD'", ")", ";", "const", "seq", "=", "this", ".", "get", "(", "'seq'", ")", ";", "if", "(", "!", "md", "&&", "seq", "&&", "this", ".", "ref", ")", "{", "return", "generateMD", "(", "this", ".", "ref", ",", "this", ".", "record", ".", "getReadBases", "(", ")", ",", "this", ".", "get", "(", "'CIGAR'", ")", ")", ";", "}", "return", "md", ";", "}", "qualRaw", "(", ")", "{", "return", "this", ".", "record", ".", "qualRaw", "(", ")", ";", "}", "set", "(", ")", "{", "}", "tags", "(", ")", "{", "const", "properties", "=", "Object", ".", "getOwnPropertyNames", "(", "BamSlightlyLazyFeature", ".", "prototype", ")", ";", "return", "[", "...", "new", "Set", "(", "properties", ".", "filter", "(", "prop", "=>", "prop", ".", "startsWith", "(", "'_get_'", ")", "&&", "prop", "!==", "'_get_mismatches'", "&&", "prop", "!==", "'_get_skips_and_dels'", "&&", "prop", "!==", "'_get_cram_read_features'", "&&", "prop", "!==", "'_get_tags'", "&&", "prop", "!==", "'_get_next_seq_id'", "&&", "prop", "!==", "'_get_seq_id'", ")", ".", "map", "(", "methodName", "=>", "methodName", ".", "replace", "(", "'_get_'", ",", "''", ")", ")", ".", "concat", "(", "this", ".", "record", ".", "_tags", "(", ")", ")", ")", ",", "]", ";", "}", "id", "(", ")", "{", "return", "`${", "this", ".", "adapter", ".", "id", "}-${", "this", ".", "record", ".", "id", "(", ")", "}`", ";", "}", "get", "(", "field", ")", "{", "const", "methodName", "=", "`_get_${", "field", "}`", ";", "if", "(", "this", "[", "methodName", "]", ")", "{", "return", "this", "[", "methodName", "]", "(", ")", ";", "}", "return", "this", ".", "record", ".", "get", "(", "field", ")", ";", "}", "_get_refName", "(", ")", "{", "return", "this", ".", "adapter", ".", "refIdToName", "(", "this", ".", "record", ".", "seq_id", "(", ")", ")", ";", "}", "parent", "(", ")", "{", "return", "undefined", ";", "}", "children", "(", ")", "{", "return", "undefined", ";", "}", "pairedFeature", "(", ")", "{", "return", "false", ";", "}", "toJSON", "(", ")", "{", "return", "{", "...", "Object", ".", "fromEntries", "(", "this", ".", "tags", "(", ")", ".", "map", "(", "t", "=>", "[", "t", ",", "this", ".", "get", "(", "t", ")", "]", ")", ".", "filter", "(", "elt", "=>", "elt", "[", "1", "]", "!==", "undefined", ")", ")", ",", "uniqueId", ":", "this", ".", "id", "(", ")", ",", "}", ";", "}", "_get_skips_and_dels", "(", "opts", "=", "{", "cigarAttributeName", ":", "'CIGAR'", ",", "}", ")", "{", "const", "{", "cigarAttributeName", "}", "=", "opts", ";", "let", "mismatches", "=", "[", "]", ";", "let", "cigarOps", "=", "[", "]", ";", "const", "cigarString", "=", "this", ".", "get", "(", "cigarAttributeName", ")", ";", "if", "(", "cigarString", ")", "{", "cigarOps", "=", "parseCigar", "(", "cigarString", ")", ";", "mismatches", "=", "mismatches", ".", "concat", "(", "cigarToMismatches", "(", "cigarOps", ",", "this", ".", "get", "(", "'seq'", ")", ",", "this", ".", "qualRaw", "(", ")", ")", ")", ";", "}", "return", "mismatches", ";", "}", "_get_mismatches", "(", "{", "cigarAttributeName", "=", "'CIGAR'", ",", "mdAttributeName", "=", "'MD'", ",", "}", "=", "{", "}", ")", "{", "let", "mismatches", "=", "[", "]", ";", "let", "cigarOps", "=", "[", "]", ";", "const", "cigarString", "=", "this", ".", "get", "(", "cigarAttributeName", ")", ";", "const", "seq", "=", "this", ".", "get", "(", "'seq'", ")", ";", "const", "qual", "=", "this", ".", "qualRaw", "(", ")", ";", "if", "(", "cigarString", ")", "{", "cigarOps", "=", "parseCigar", "(", "cigarString", ")", ";", "mismatches", "=", "mismatches", ".", "concat", "(", "cigarToMismatches", "(", "cigarOps", ",", "seq", ",", "qual", ")", ")", ";", "}", "const", "mdString", "=", "this", ".", "get", "(", "mdAttributeName", ")", ";", "if", "(", "mdString", ")", "{", "mismatches", "=", "mismatches", ".", "concat", "(", "mdToMismatches", "(", "mdString", ",", "cigarOps", ",", "mismatches", ",", "seq", ",", "qual", ")", ")", ";", "}", "const", "seen", "=", "{", "}", ";", "return", "mismatches", ".", "filter", "(", "m", "=>", "{", "const", "key", "=", "`${", "m", ".", "type", "},${", "m", ".", "start", "},${", "m", ".", "length", "}`", ";", "const", "s", "=", "seen", "[", "key", "]", ";", "seen", "[", "key", "]", "=", "true", ";", "return", "!", "s", ";", "}", ")", ";", "}", "_get_clipPos", "(", ")", "{", "const", "cigar", "=", "this", ".", "get", "(", "'CIGAR'", ")", "||", "''", ";", "return", "this", ".", "get", "(", "'strand'", ")", "===", "-", "1", "?", "+", "(", "cigar", ".", "match", "(", "/(\\d+)[SH]$/", ")", "||", "[", "]", ")", "[", "1", "]", "||", "0", ":", "+", "(", "cigar", ".", "match", "(", "/^(\\d+)([SH])/", ")", "||", "[", "]", ")", "[", "1", "]", "||", "0", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, 0, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 12, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, 5, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 126, null, null, null, null, null, null, null, 126, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660130
[ "import", "{", "BamFile", "}", "from", "'@gmod/bam'", ";", "import", "{", "BaseFeatureDataAdapter", ",", "BaseOptions", ",", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "import", "{", "Region", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "{", "checkAbortSignal", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "openLocation", "}", "from", "'@jbrowse/core/util/io'", ";", "import", "{", "ObservableCreate", "}", "from", "'@jbrowse/core/util/rxjs'", ";", "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "BamSlightlyLazyFeature", "from", "'./BamSlightlyLazyFeature'", ";", "interface", "Header", "{", "idToName", ":", "string", "[", "]", ";", "nameToId", ":", "Record", "<", "string", ",", "number", ">", ";", "}", "export", "default", "class", "BamAdapter", "extends", "BaseFeatureDataAdapter", "{", "private", "samHeader", "?", ":", "Header", ";", "private", "setupP", "?", ":", "Promise", "<", "Header", ">", ";", "protected", "configured", "?", ":", "Promise", "<", "{", "bam", ":", "BamFile", ";", "sequenceAdapter", "?", ":", "BaseFeatureDataAdapter", ";", "}", ">", ";", "protected", "async", "configure", "(", ")", "{", "if", "(", "!", "this", ".", "configured", ")", "{", "const", "bamLocation", "=", "readConfObject", "(", "this", ".", "config", ",", "'bamLocation'", ")", ";", "const", "location", "=", "readConfObject", "(", "this", ".", "config", ",", "[", "'index'", ",", "'location'", "]", ")", ";", "const", "indexType", "=", "readConfObject", "(", "this", ".", "config", ",", "[", "'index'", ",", "'indexType'", "]", ")", ";", "const", "chunkSizeLimit", "=", "readConfObject", "(", "this", ".", "config", ",", "'chunkSizeLimit'", ")", ";", "const", "fetchSizeLimit", "=", "readConfObject", "(", "this", ".", "config", ",", "'fetchSizeLimit'", ")", ";", "const", "bam", "=", "new", "BamFile", "(", "{", "bamFilehandle", ":", "openLocation", "(", "bamLocation", ",", "this", ".", "pluginManager", ")", ",", "csiFilehandle", ":", "indexType", "===", "'CSI'", "?", "openLocation", "(", "location", ",", "this", ".", "pluginManager", ")", ":", "undefined", ",", "baiFilehandle", ":", "indexType", "!==", "'CSI'", "?", "openLocation", "(", "location", ",", "this", ".", "pluginManager", ")", ":", "undefined", ",", "chunkSizeLimit", ",", "fetchSizeLimit", ",", "}", ")", ";", "const", "adapterConfig", "=", "readConfObject", "(", "this", ".", "config", ",", "'sequenceAdapter'", ")", ";", "if", "(", "adapterConfig", "&&", "this", ".", "getSubAdapter", ")", "{", "this", ".", "configured", "=", "this", ".", "getSubAdapter", "(", "adapterConfig", ")", ".", "then", "(", "(", "{", "dataAdapter", "}", ")", "=>", "(", "{", "bam", ",", "sequenceAdapter", ":", "dataAdapter", "as", "BaseFeatureDataAdapter", ",", "}", ")", ")", ";", "}", "else", "{", "this", ".", "configured", "=", "Promise", ".", "resolve", "(", "{", "bam", "}", ")", ";", "}", "}", "return", "this", ".", "configured", ";", "}", "async", "getHeader", "(", "opts", "?", ")", "{", "const", "{", "bam", "}", "=", "await", "this", ".", "configure", "(", ")", ";", "return", "bam", ".", "getHeaderText", "(", "opts", ")", ";", "}", "private", "async", "setup", "(", "opts", "?", ")", "{", "const", "{", "statusCallback", "=", "(", ")", "=>", "{", "}", "}", "=", "opts", "||", "{", "}", ";", "if", "(", "!", "this", ".", "setupP", ")", "{", "this", ".", "setupP", "=", "this", ".", "configure", "(", ")", ".", "then", "(", "async", "(", "{", "bam", "}", ")", "=>", "{", "statusCallback", "(", "'Downloading index'", ")", ";", "const", "samHeader", "=", "await", "bam", ".", "getHeader", "(", "opts", ")", ";", "const", "idToName", "=", "[", "]", ";", "const", "nameToId", "=", "{", "}", ";", "samHeader", ".", "filter", "(", "l", "=>", "l", ".", "tag", "===", "'SQ'", ")", ".", "forEach", "(", "(", "sqLine", ",", "refId", ")", "=>", "{", "sqLine", ".", "data", ".", "forEach", "(", "item", "=>", "{", "if", "(", "item", ".", "tag", "===", "'SN'", ")", "{", "const", "refName", "=", "item", ".", "value", ";", "nameToId", "[", "refName", "]", "=", "refId", ";", "idToName", "[", "refId", "]", "=", "refName", ";", "}", "}", ")", ";", "}", ")", ";", "statusCallback", "(", "''", ")", ";", "this", ".", "samHeader", "=", "{", "idToName", ",", "nameToId", "}", ";", "return", "this", ".", "samHeader", ";", "}", ")", ".", "catch", "(", "e", "=>", "{", "this", ".", "setupP", "=", "undefined", ";", "throw", "e", ";", "}", ")", ";", "}", "return", "this", ".", "setupP", ";", "}", "async", "getRefNames", "(", "opts", "?", ")", "{", "const", "{", "idToName", "}", "=", "await", "this", ".", "setup", "(", "opts", ")", ";", "return", "idToName", ";", "}", "private", "async", "seqFetch", "(", "refName", ",", "start", ",", "end", ")", "{", "const", "{", "sequenceAdapter", "}", "=", "await", "this", ".", "configure", "(", ")", ";", "const", "refSeqStore", "=", "sequenceAdapter", ";", "if", "(", "!", "refSeqStore", ")", "{", "return", "undefined", ";", "}", "if", "(", "!", "refName", ")", "{", "return", "undefined", ";", "}", "const", "features", "=", "refSeqStore", ".", "getFeatures", "(", "{", "refName", ",", "start", ",", "end", ",", "assemblyName", ":", "''", ",", "}", ")", ";", "const", "seqChunks", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "trimmed", "=", "[", "]", ";", "seqChunks", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "get", "(", "'start'", ")", "-", "b", ".", "get", "(", "'start'", ")", ")", ".", "forEach", "(", "chunk", "=>", "{", "const", "chunkStart", "=", "chunk", ".", "get", "(", "'start'", ")", ";", "const", "chunkEnd", "=", "chunk", ".", "get", "(", "'end'", ")", ";", "const", "trimStart", "=", "Math", ".", "max", "(", "start", "-", "chunkStart", ",", "0", ")", ";", "const", "trimEnd", "=", "Math", ".", "min", "(", "end", "-", "chunkStart", ",", "chunkEnd", "-", "chunkStart", ")", ";", "const", "trimLength", "=", "trimEnd", "-", "trimStart", ";", "const", "chunkSeq", "=", "chunk", ".", "get", "(", "'seq'", ")", "||", "chunk", ".", "get", "(", "'residues'", ")", ";", "trimmed", ".", "push", "(", "chunkSeq", ".", "substr", "(", "trimStart", ",", "trimLength", ")", ")", ";", "}", ")", ";", "const", "sequence", "=", "trimmed", ".", "join", "(", "''", ")", ";", "if", "(", "sequence", ".", "length", "!==", "end", "-", "start", ")", "{", "throw", "new", "Error", "(", "`sequence fetch failed: fetching ${", "refName", "}:${", "(", "start", "-", "1", ")", ".", "toLocaleString", "(", ")", "}-${", "end", ".", "toLocaleString", "(", ")", "} returned ${", "sequence", ".", "length", ".", "toLocaleString", "(", ")", "} bases, but should have returned ${", "(", "end", "-", "start", ")", ".", "toLocaleString", "(", ")", "}`", ")", ";", "}", "return", "sequence", ";", "}", "getFeatures", "(", "region", ",", "opts", "?", ")", "{", "const", "{", "refName", ",", "start", ",", "end", ",", "originalRefName", "}", "=", "region", ";", "const", "{", "signal", ",", "statusCallback", "=", "(", ")", "=>", "{", "}", "}", "=", "opts", "||", "{", "}", ";", "return", "ObservableCreate", "<", "Feature", ">", "(", "async", "(", "observer", ")", "=>", "{", "const", "{", "bam", "}", "=", "await", "this", ".", "configure", "(", ")", ";", "await", "this", ".", "setup", "(", "opts", ")", ";", "statusCallback", "(", "'Downloading alignments'", ")", ";", "const", "records", "=", "await", "bam", ".", "getRecordsForRange", "(", "refName", ",", "start", ",", "end", ",", "opts", ")", ";", "checkAbortSignal", "(", "signal", ")", ";", "for", "(", "const", "record", "of", "records", ")", "{", "let", "ref", ";", "if", "(", "!", "record", ".", "get", "(", "'md'", ")", ")", "{", "ref", "=", "await", "this", ".", "seqFetch", "(", "originalRefName", "||", "refName", ",", "record", ".", "get", "(", "'start'", ")", ",", "record", ".", "get", "(", "'end'", ")", ")", ";", "}", "observer", ".", "next", "(", "new", "BamSlightlyLazyFeature", "(", "record", ",", "this", ",", "ref", ")", ")", ";", "}", "statusCallback", "(", "''", ")", ";", "observer", ".", "complete", "(", ")", ";", "}", ",", "signal", ")", ";", "}", "freeResources", "(", ")", "{", "}", "refIdToName", "(", "refId", ")", "{", "return", "this", ".", "samHeader", "?.", "idToName", "[", "refId", "]", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, 17, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, 6, null, 3, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 2, null, 3, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, 2, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660131
[ "import", "{", "BamFile", ",", "HtsgetFile", "}", "from", "'@gmod/bam'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "BaseFeatureDataAdapter", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "import", "BamAdapter", "from", "'../BamAdapter/BamAdapter'", ";", "export", "default", "class", "HtsgetBamAdapter", "extends", "BamAdapter", "{", "protected", "async", "configure", "(", ")", "{", "if", "(", "!", "this", ".", "configured", ")", "{", "const", "htsgetBase", "=", "readConfObject", "(", "this", ".", "config", ",", "'htsgetBase'", ")", ";", "const", "htsgetTrackId", "=", "readConfObject", "(", "this", ".", "config", ",", "'htsgetTrackId'", ")", ";", "const", "bam", "=", "new", "HtsgetFile", "(", "{", "baseUrl", ":", "htsgetBase", ",", "trackId", ":", "htsgetTrackId", ",", "}", ")", "as", "unknown", "as", "BamFile", ";", "const", "adapterConfig", "=", "readConfObject", "(", "this", ".", "config", ",", "'sequenceAdapter'", ")", ";", "if", "(", "adapterConfig", "&&", "this", ".", "getSubAdapter", ")", "{", "this", ".", "configured", "=", "this", ".", "getSubAdapter", "(", "adapterConfig", ")", ".", "then", "(", "(", "{", "dataAdapter", "}", ")", "=>", "{", "return", "{", "bam", ",", "sequenceAdapter", ":", "dataAdapter", "as", "BaseFeatureDataAdapter", ",", "}", ";", "}", ")", ";", "}", "this", ".", "configured", "=", "Promise", ".", "resolve", "(", "{", "bam", "}", ")", ";", "}", "return", "this", ".", "configured", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660132
[ "import", "configSchema", "from", "'./configSchema'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "AdapterType", "from", "'@jbrowse/core/pluggableElementTypes/AdapterType'", ";", "export", "default", "(", "pluginManager", ")", "=>", "{", "pluginManager", ".", "addAdapterType", "(", "(", ")", "=>", "new", "AdapterType", "(", "{", "name", ":", "'HtsgetBamAdapter'", ",", "adapterMetadata", ":", "{", "category", ":", "null", ",", "hiddenFromGUI", ":", "true", ",", "displayName", ":", "null", ",", "description", ":", "null", ",", "}", ",", "configSchema", ",", "getAdapterClass", ":", "(", ")", "=>", "import", "(", "'./HtsgetBamAdapter'", ")", ".", "then", "(", "r", "=>", "r", ".", "default", ")", ",", "}", ")", ")", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null ]
660133
[ "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "types", "}", "from", "'mobx-state-tree'", ";", "export", "default", "(", "pluginManager", ")", "=>", "types", ".", "late", "(", "(", ")", "=>", "ConfigurationSchema", "(", "'SNPCoverageAdapter'", ",", "{", "subadapter", ":", "pluginManager", ".", "pluggableConfigSchemaType", "(", "'adapter'", ")", ",", "}", ",", "{", "explicitlyTyped", ":", "true", "}", ")", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660134
[ "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "export", "function", "getTag", "(", "feature", ",", "tag", ")", "{", "const", "tags", "=", "feature", ".", "get", "(", "'tags'", ")", ";", "return", "tags", "?", "tags", "[", "tag", "]", ":", "feature", ".", "get", "(", "tag", ")", ";", "}", "export", "function", "getTagAlt", "(", "feature", ",", "tag", ",", "alt", ")", "{", "return", "getTag", "(", "feature", ",", "tag", ")", "||", "getTag", "(", "feature", ",", "alt", ")", ";", "}", "export", "const", "orientationTypes", "=", "{", "fr", ":", "{", "F1R2", ":", "'LR'", ",", "F2R1", ":", "'LR'", ",", "F1F2", ":", "'LL'", ",", "F2F1", ":", "'LL'", ",", "R1R2", ":", "'RR'", ",", "R2R1", ":", "'RR'", ",", "R1F2", ":", "'RL'", ",", "R2F1", ":", "'RL'", ",", "}", "as", "{", "[", "key", "]", ":", "string", ";", "}", ",", "rf", ":", "{", "R1F2", ":", "'LR'", ",", "R2F1", ":", "'LR'", ",", "R1R2", ":", "'LL'", ",", "R2R1", ":", "'LL'", ",", "F1F2", ":", "'RR'", ",", "F2F1", ":", "'RR'", ",", "F1R2", ":", "'RL'", ",", "F2R1", ":", "'RL'", ",", "}", "as", "{", "[", "key", "]", ":", "string", ";", "}", ",", "ff", ":", "{", "F2F1", ":", "'LR'", ",", "R1R2", ":", "'LR'", ",", "F2R1", ":", "'LL'", ",", "R1F2", ":", "'LL'", ",", "R2F1", ":", "'RR'", ",", "F1R2", ":", "'RR'", ",", "R2R1", ":", "'RL'", ",", "F1F2", ":", "'RL'", ",", "}", "as", "{", "[", "key", "]", ":", "string", ";", "}", ",", "}", ";", "export", "function", "getColorWGBS", "(", "strand", ",", "base", ")", "{", "if", "(", "strand", "===", "1", ")", "{", "if", "(", "base", "===", "'C'", ")", "{", "return", "'#f00'", ";", "}", "if", "(", "base", "===", "'T'", ")", "{", "return", "'#00f'", ";", "}", "}", "else", "if", "(", "strand", "===", "-", "1", ")", "{", "if", "(", "base", "===", "'G'", ")", "{", "return", "'#f00'", ";", "}", "if", "(", "base", "===", "'A'", ")", "{", "return", "'#00f'", ";", "}", "}", "return", "'#888'", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, 536, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 536, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660135
[ "import", "{", "BaseFeatureDataAdapter", ",", "BaseOptions", ",", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "import", "{", "AugmentedRegion", "as", "Region", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "SimpleFeature", ",", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "SerializableFilterChain", "from", "'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'", ";", "import", "{", "ObservableCreate", "}", "from", "'@jbrowse/core/util/rxjs'", ";", "import", "{", "reduce", ",", "filter", ",", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "{", "Observable", "}", "from", "'rxjs'", ";", "import", "{", "getTagAlt", "}", "from", "'../util'", ";", "import", "{", "parseCigar", ",", "getNextRefPos", ",", "getModificationPositions", ",", "Mismatch", ",", "}", "from", "'../BamAdapter/MismatchParser'", ";", "interface", "SNPCoverageOptions", "extends", "BaseOptions", "{", "filters", "?", ":", "SerializableFilterChain", ";", "}", "function", "mismatchLen", "(", "mismatch", ")", "{", "return", "!", "isInterbase", "(", "mismatch", ".", "type", ")", "?", "mismatch", ".", "length", ":", "1", ";", "}", "function", "isInterbase", "(", "type", ")", "{", "return", "type", "===", "'softclip'", "||", "type", "===", "'hardclip'", "||", "type", "===", "'insertion'", ";", "}", "function", "inc", "(", "bin", ",", "strand", ",", "type", ",", "field", ")", "{", "if", "(", "!", "bin", "[", "type", "]", "[", "field", "]", ")", "{", "bin", "[", "type", "]", "[", "field", "]", "=", "{", "total", ":", "0", ",", "strands", ":", "{", "'-1'", ":", "0", ",", "'0'", ":", "0", ",", "'1'", ":", "0", "}", "}", ";", "}", "bin", "[", "type", "]", "[", "field", "]", ".", "total", "++", ";", "bin", "[", "type", "]", "[", "field", "]", ".", "strands", "[", "strand", "]", "++", ";", "}", "function", "dec", "(", "bin", ",", "strand", ",", "type", ",", "field", ")", "{", "if", "(", "!", "bin", "[", "type", "]", "[", "field", "]", ")", "{", "bin", "[", "type", "]", "[", "field", "]", "=", "{", "total", ":", "0", ",", "strands", ":", "{", "'-1'", ":", "0", ",", "'0'", ":", "0", ",", "'1'", ":", "0", "}", "}", ";", "}", "bin", "[", "type", "]", "[", "field", "]", ".", "total", "--", ";", "bin", "[", "type", "]", "[", "field", "]", ".", "strands", "[", "strand", "]", "--", ";", "}", "export", "default", "class", "SNPCoverageAdapter", "extends", "BaseFeatureDataAdapter", "{", "protected", "async", "configure", "(", ")", "{", "const", "subadapterConfig", "=", "readConfObject", "(", "this", ".", "config", ",", "'subadapter'", ")", ";", "const", "sequenceConf", "=", "readConfObject", "(", "this", ".", "config", ",", "[", "'subadapter'", ",", "'sequenceAdapter'", ",", "]", ")", ";", "const", "dataAdapter", "=", "await", "this", ".", "getSubAdapter", "?.", "(", "subadapterConfig", ")", ";", "const", "sequenceAdapter", "=", "sequenceConf", "?", "await", "this", ".", "getSubAdapter", "?.", "(", "sequenceConf", ")", ":", "undefined", ";", "if", "(", "!", "dataAdapter", ")", "{", "throw", "new", "Error", "(", "'Failed to get subadapter'", ")", ";", "}", "return", "{", "subadapter", ":", "dataAdapter", ".", "dataAdapter", "as", "BaseFeatureDataAdapter", ",", "sequenceAdapter", ":", "sequenceAdapter", "?.", "dataAdapter", "as", "BaseFeatureDataAdapter", "|", "undefined", ",", "}", ";", "}", "getFeatures", "(", "region", ",", "opts", "=", "{", "}", ")", "{", "return", "ObservableCreate", "<", "Feature", ">", "(", "async", "(", "observer", ")", "=>", "{", "const", "{", "subadapter", "}", "=", "await", "this", ".", "configure", "(", ")", ";", "let", "stream", "=", "subadapter", ".", "getFeatures", "(", "region", ",", "opts", ")", ";", "if", "(", "opts", ".", "filters", ")", "{", "const", "{", "filters", "}", "=", "opts", ";", "stream", "=", "stream", ".", "pipe", "(", "filter", "(", "f", "=>", "filters", ".", "passes", "(", "f", ",", "opts", ")", ")", ")", ";", "}", "const", "{", "bins", ",", "skipmap", "}", "=", "await", "this", ".", "generateCoverageBins", "(", "stream", ",", "region", ",", "opts", ")", ";", "bins", ".", "forEach", "(", "(", "bin", ",", "index", ")", "=>", "{", "if", "(", "bin", ".", "total", ")", "{", "observer", ".", "next", "(", "new", "SimpleFeature", "(", "{", "id", ":", "`${", "this", ".", "id", "}-${", "region", ".", "start", "}-${", "index", "}`", ",", "data", ":", "{", "score", ":", "bin", ".", "total", ",", "snpinfo", ":", "bin", ",", "start", ":", "region", ".", "start", "+", "index", ",", "end", ":", "region", ".", "start", "+", "index", "+", "1", ",", "refName", ":", "region", ".", "refName", ",", "}", ",", "}", ")", ")", ";", "}", "}", ")", ";", "Object", ".", "entries", "(", "skipmap", ")", ".", "forEach", "(", "(", "[", "key", ",", "skip", "]", ")", "=>", "{", "observer", ".", "next", "(", "new", "SimpleFeature", "(", "{", "id", ":", "key", ",", "data", ":", "{", "type", ":", "'skip'", ",", "start", ":", "skip", ".", "start", ",", "end", ":", "skip", ".", "end", ",", "strand", ":", "skip", ".", "strand", ",", "score", ":", "skip", ".", "score", ",", "xs", ":", "skip", ".", "xs", ",", "}", ",", "}", ")", ")", ";", "}", ")", ";", "observer", ".", "complete", "(", ")", ";", "}", ",", "opts", ".", "signal", ")", ";", "}", "async", "getRefNames", "(", "opts", "=", "{", "}", ")", "{", "const", "{", "subadapter", "}", "=", "await", "this", ".", "configure", "(", ")", ";", "return", "subadapter", ".", "getRefNames", "(", "opts", ")", ";", "}", "freeResources", "(", ")", "{", "}", "param", "features", "param", "region", "param", "bpPerPx", "returns", "async", "generateCoverageBins", "(", "features", ",", "region", ",", "opts", ")", "{", "const", "{", "colorBy", "}", "=", "opts", ";", "const", "{", "sequenceAdapter", "}", "=", "await", "this", ".", "configure", "(", ")", ";", "const", "{", "originalRefName", ",", "refName", ",", "start", ",", "end", "}", "=", "region", ";", "const", "binMax", "=", "Math", ".", "ceil", "(", "region", ".", "end", "-", "region", ".", "start", ")", ";", "const", "skipmap", "=", "{", "}", "as", "{", "[", "key", "]", ":", "{", "score", ":", "number", ";", "feature", ":", "unknown", ";", "start", ":", "number", ";", "end", ":", "number", ";", "strand", ":", "number", ";", "xs", ":", "string", ";", "}", ";", "}", ";", "type", "BinType", "=", "{", "total", ":", "number", ";", "strands", ":", "{", "[", "key", "]", ":", "number", ";", "}", ";", "}", ";", "const", "initBins", "=", "Array", ".", "from", "(", "{", "length", ":", "binMax", "}", ",", "(", ")", "=>", "(", "{", "total", ":", "0", ",", "lowqual", ":", "{", "}", "as", "BinType", ",", "cov", ":", "{", "}", "as", "BinType", ",", "delskips", ":", "{", "}", "as", "BinType", ",", "noncov", ":", "{", "}", "as", "BinType", ",", "ref", ":", "{", "}", "as", "BinType", ",", "}", ")", ")", ";", "let", "regionSeq", ";", "if", "(", "sequenceAdapter", ")", "{", "const", "[", "feat", "]", "=", "await", "sequenceAdapter", ".", "getFeatures", "(", "{", "refName", ":", "originalRefName", "||", "refName", ",", "start", ",", "end", ":", "end", "+", "1", ",", "assemblyName", ":", "'na'", ",", "}", ")", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "regionSeq", "=", "feat", "?.", "get", "(", "'seq'", ")", ";", "}", "const", "bins", "=", "await", "features", ".", "pipe", "(", "reduce", "(", "(", "bins", ",", "feature", ")", "=>", "{", "const", "cigar", "=", "feature", ".", "get", "(", "'CIGAR'", ")", ";", "const", "fstart", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "fend", "=", "feature", ".", "get", "(", "'end'", ")", ";", "const", "fstrand", "=", "feature", ".", "get", "(", "'strand'", ")", ";", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "for", "(", "let", "j", "=", "fstart", ";", "j", "<", "fend", ";", "j", "++", ")", "{", "const", "i", "=", "j", "-", "region", ".", "start", ";", "if", "(", "i", ">=", "0", "&&", "i", "<", "bins", ".", "length", ")", "{", "const", "bin", "=", "bins", "[", "i", "]", ";", "bin", ".", "total", "++", ";", "inc", "(", "bin", ",", "fstrand", ",", "'ref'", ",", "'ref'", ")", ";", "}", "}", "if", "(", "colorBy", "?.", "type", "===", "'modifications'", ")", "{", "const", "seq", "=", "feature", ".", "get", "(", "'seq'", ")", ";", "const", "mm", "=", "getTagAlt", "(", "feature", ",", "'MM'", ",", "'Mm'", ")", "||", "''", ";", "const", "ml", "=", "(", "getTagAlt", "(", "feature", ",", "'ML'", ",", "'Ml'", ")", "as", "number", "[", "]", "|", "string", ")", "||", "[", "]", ";", "const", "probabilities", "=", "ml", "?", "(", "typeof", "ml", "===", "'string'", "?", "ml", ".", "split", "(", "','", ")", ".", "map", "(", "e", "=>", "+", "e", ")", ":", "ml", ")", ".", "map", "(", "e", "=>", "e", "/", "255", ")", ":", "(", "getTagAlt", "(", "feature", ",", "'MP'", ",", "'Mp'", ")", "as", "string", ")", ".", "split", "(", "''", ")", ".", "map", "(", "s", "=>", "s", ".", "charCodeAt", "(", "0", ")", "-", "33", ")", ".", "map", "(", "elt", "=>", "Math", ".", "min", "(", "1", ",", "elt", "/", "50", ")", ")", ";", "let", "probIndex", "=", "0", ";", "getModificationPositions", "(", "mm", ",", "seq", ",", "fstrand", ")", ".", "forEach", "(", "(", "{", "type", ",", "positions", "}", ")", "=>", "{", "const", "mod", "=", "`mod_${", "type", "}`", ";", "for", "(", "const", "pos", "of", "getNextRefPos", "(", "cigarOps", ",", "positions", ")", ")", "{", "const", "epos", "=", "pos", "+", "fstart", "-", "region", ".", "start", ";", "if", "(", "epos", ">=", "0", "&&", "epos", "<", "bins", ".", "length", "&&", "pos", "+", "fstart", "<", "fend", ")", "{", "const", "bin", "=", "bins", "[", "epos", "]", ";", "if", "(", "probabilities", "[", "probIndex", "]", ">", "0.5", ")", "{", "inc", "(", "bin", ",", "fstrand", ",", "'cov'", ",", "mod", ")", ";", "}", "else", "{", "inc", "(", "bin", ",", "fstrand", ",", "'lowqual'", ",", "mod", ")", ";", "}", "}", "probIndex", "++", ";", "}", "}", ")", ";", "}", "else", "if", "(", "colorBy", "?.", "type", "===", "'methylation'", ")", "{", "if", "(", "!", "regionSeq", ")", "{", "throw", "new", "Error", "(", "'no region sequence detected, need sequenceAdapter configuration'", ")", ";", "}", "const", "seq", "=", "feature", ".", "get", "(", "'seq'", ")", ";", "const", "mm", "=", "getTagAlt", "(", "feature", ",", "'MM'", ",", "'Mm'", ")", "||", "''", ";", "const", "methBins", "=", "new", "Array", "(", "region", ".", "end", "-", "region", ".", "start", ")", ".", "fill", "(", "0", ")", ";", "getModificationPositions", "(", "mm", ",", "seq", ",", "fstrand", ")", ".", "forEach", "(", "(", "{", "type", ",", "positions", "}", ")", "=>", "{", "if", "(", "type", "===", "'m'", ")", "{", "for", "(", "const", "pos", "of", "getNextRefPos", "(", "cigarOps", ",", "positions", ")", ")", "{", "const", "epos", "=", "pos", "+", "fstart", "-", "region", ".", "start", ";", "if", "(", "epos", ">=", "0", "&&", "epos", "<", "methBins", ".", "length", ")", "{", "methBins", "[", "epos", "]", "=", "1", ";", "}", "}", "}", "}", ")", ";", "for", "(", "let", "j", "=", "fstart", ";", "j", "<", "fend", ";", "j", "++", ")", "{", "const", "i", "=", "j", "-", "region", ".", "start", ";", "if", "(", "i", ">=", "0", "&&", "i", "<", "bins", ".", "length", "-", "1", ")", "{", "const", "l1", "=", "regionSeq", "[", "i", "]", ".", "toLowerCase", "(", ")", ";", "const", "l2", "=", "regionSeq", "[", "i", "+", "1", "]", ".", "toLowerCase", "(", ")", ";", "const", "bin", "=", "bins", "[", "i", "]", ";", "const", "bin1", "=", "bins", "[", "i", "+", "1", "]", ";", "if", "(", "l1", "===", "'c'", "&&", "l2", "===", "'g'", ")", "{", "if", "(", "methBins", "[", "i", "]", "||", "methBins", "[", "i", "+", "1", "]", ")", "{", "inc", "(", "bin", ",", "fstrand", ",", "'cov'", ",", "'meth'", ")", ";", "inc", "(", "bin1", ",", "fstrand", ",", "'cov'", ",", "'meth'", ")", ";", "dec", "(", "bin", ",", "fstrand", ",", "'ref'", ",", "'ref'", ")", ";", "dec", "(", "bin1", ",", "fstrand", ",", "'ref'", ",", "'ref'", ")", ";", "}", "else", "{", "inc", "(", "bin", ",", "fstrand", ",", "'cov'", ",", "'unmeth'", ")", ";", "inc", "(", "bin1", ",", "fstrand", ",", "'cov'", ",", "'unmeth'", ")", ";", "dec", "(", "bin", ",", "fstrand", ",", "'ref'", ",", "'ref'", ")", ";", "dec", "(", "bin1", ",", "fstrand", ",", "'ref'", ",", "'ref'", ")", ";", "}", "}", "}", "}", "}", "else", "{", "const", "mismatches", "=", "feature", ".", "get", "(", "'mismatches'", ")", "as", "Mismatch", "[", "]", "|", "undefined", ";", "if", "(", "mismatches", ")", "{", "for", "(", "let", "i", "=", "0", ";", "i", "<", "mismatches", ".", "length", ";", "i", "++", ")", "{", "const", "mismatch", "=", "mismatches", "[", "i", "]", ";", "const", "mstart", "=", "fstart", "+", "mismatch", ".", "start", ";", "for", "(", "let", "j", "=", "mstart", ";", "j", "<", "mstart", "+", "mismatchLen", "(", "mismatch", ")", ";", "j", "++", ")", "{", "const", "epos", "=", "j", "-", "region", ".", "start", ";", "if", "(", "epos", ">=", "0", "&&", "epos", "<", "bins", ".", "length", ")", "{", "const", "bin", "=", "bins", "[", "epos", "]", ";", "const", "{", "base", ",", "type", "}", "=", "mismatch", ";", "const", "interbase", "=", "isInterbase", "(", "type", ")", ";", "if", "(", "!", "interbase", ")", "{", "dec", "(", "bin", ",", "fstrand", ",", "'ref'", ",", "'ref'", ")", ";", "}", "else", "{", "inc", "(", "bin", ",", "fstrand", ",", "'noncov'", ",", "type", ")", ";", "}", "if", "(", "type", "===", "'deletion'", "||", "type", "===", "'skip'", ")", "{", "inc", "(", "bin", ",", "fstrand", ",", "'delskips'", ",", "type", ")", ";", "bin", ".", "total", "--", ";", "}", "else", "if", "(", "!", "interbase", ")", "{", "inc", "(", "bin", ",", "fstrand", ",", "'cov'", ",", "base", ")", ";", "}", "}", "}", "}", "mismatches", ".", "filter", "(", "mismatch", "=>", "mismatch", ".", "type", "===", "'skip'", ")", ".", "forEach", "(", "mismatch", "=>", "{", "const", "mstart", "=", "feature", ".", "get", "(", "'start'", ")", "+", "mismatch", ".", "start", ";", "const", "start", "=", "mstart", ";", "const", "end", "=", "mstart", "+", "mismatch", ".", "length", ";", "const", "strand", "=", "feature", ".", "get", "(", "'strand'", ")", ";", "const", "hash", "=", "`${", "start", "}_${", "end", "}_${", "strand", "}`", ";", "if", "(", "!", "skipmap", "[", "hash", "]", ")", "{", "skipmap", "[", "hash", "]", "=", "{", "feature", ":", "feature", ",", "start", ",", "end", ",", "strand", ",", "xs", ":", "feature", ".", "get", "(", "'xs'", ")", "||", "feature", ".", "get", "(", "'ts'", ")", "||", "feature", ".", "get", "(", "'tags'", ")", ".", "XS", "||", "feature", ".", "get", "(", "'tags'", ")", ".", "TS", ",", "score", ":", "1", ",", "}", ";", "}", "else", "{", "skipmap", "[", "hash", "]", ".", "score", "++", ";", "}", "}", ")", ";", "}", "}", "return", "bins", ";", "}", ",", "initBins", ")", ")", ".", "toPromise", "(", ")", ";", "return", "{", "bins", ",", "skipmap", "}", ";", "}", "}", "const", "{", "capabilities", "}", "=", "SNPCoverageAdapter", ";", "export", "{", "capabilities", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, 3, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, 3, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 143, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 7266, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 18, null, 143, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660136
[ "import", "{", "createJBrowseTheme", "}", "from", "'@jbrowse/core/ui'", ";", "import", "{", "featureSpanPx", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "bpSpanPx", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "RenderArgsDeserialized", "as", "FeatureRenderArgsDeserialized", "}", "from", "'@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType'", ";", "import", "{", "getOrigin", ",", "getScale", ",", "ScaleOpts", ",", "WiggleBaseRenderer", ",", "YSCALEBAR_LABEL_OFFSET", ",", "}", "from", "'@jbrowse/plugin-wiggle'", ";", "export", "interface", "RenderArgsDeserialized", "extends", "FeatureRenderArgsDeserialized", "{", "bpPerPx", ":", "number", ";", "height", ":", "number", ";", "highResolutionScaling", ":", "number", ";", "scaleOpts", ":", "ScaleOpts", ";", "}", "export", "interface", "RenderArgsDeserializedWithFeatures", "extends", "RenderArgsDeserialized", "{", "features", ":", "Map", "<", "string", ",", "Feature", ">", ";", "ticks", ":", "{", "values", ":", "number", "[", "]", ";", "}", ";", "displayCrossHatches", ":", "boolean", ";", "modificationTagMap", ":", "Record", "<", "string", ",", "string", ">", ";", "}", "type", "Counts", "=", "{", "[", "key", "]", ":", "{", "total", ":", "number", ";", "strands", ":", "{", "[", "key", "]", ":", "number", ";", "}", ";", "}", ";", "}", ";", "interface", "SNPInfo", "{", "cov", ":", "Counts", ";", "noncov", ":", "Counts", ";", "total", ":", "number", ";", "}", "export", "default", "class", "SNPCoverageRenderer", "extends", "WiggleBaseRenderer", "{", "draw", "(", "ctx", ",", "props", ")", "{", "const", "{", "features", ",", "regions", ",", "bpPerPx", ",", "displayCrossHatches", ",", "modificationTagMap", ",", "scaleOpts", ",", "height", ":", "unadjustedHeight", ",", "theme", ":", "configTheme", ",", "config", ":", "cfg", ",", "ticks", ":", "{", "values", "}", ",", "}", "=", "props", ";", "const", "theme", "=", "createJBrowseTheme", "(", "configTheme", ")", ";", "const", "[", "region", "]", "=", "regions", ";", "const", "width", "=", "(", "region", ".", "end", "-", "region", ".", "start", ")", "/", "bpPerPx", ";", "const", "offset", "=", "YSCALEBAR_LABEL_OFFSET", ";", "const", "height", "=", "unadjustedHeight", "-", "offset", "*", "2", ";", "const", "opts", "=", "{", "...", "scaleOpts", ",", "range", ":", "[", "0", ",", "height", "]", "}", ";", "const", "viewScale", "=", "getScale", "(", "opts", ")", ";", "const", "snpViewScale", "=", "getScale", "(", "{", "...", "opts", ",", "scaleType", ":", "'linear'", "}", ")", ";", "const", "originY", "=", "getOrigin", "(", "scaleOpts", ".", "scaleType", ")", ";", "const", "snpOriginY", "=", "getOrigin", "(", "'linear'", ")", ";", "const", "indicatorThreshold", "=", "readConfObject", "(", "cfg", ",", "'indicatorThreshold'", ")", ";", "const", "drawInterbaseCounts", "=", "readConfObject", "(", "cfg", ",", "'drawInterbaseCounts'", ")", ";", "const", "drawArcs", "=", "readConfObject", "(", "cfg", ",", "'drawArcs'", ")", ";", "const", "drawIndicators", "=", "readConfObject", "(", "cfg", ",", "'drawIndicators'", ")", ";", "const", "toY", "=", "(", "n", ")", "=>", "height", "-", "(", "viewScale", "(", "n", ")", "||", "0", ")", "+", "offset", ";", "const", "toHeight", "=", "(", "n", ")", "=>", "toY", "(", "originY", ")", "-", "toY", "(", "n", ")", ";", "const", "snpToY", "=", "(", "n", ")", "=>", "height", "-", "(", "snpViewScale", "(", "n", ")", "||", "0", ")", "+", "offset", ";", "const", "snpToHeight", "=", "(", "n", ")", "=>", "snpToY", "(", "snpOriginY", ")", "-", "snpToY", "(", "n", ")", ";", "const", "colorForBase", "=", "{", "A", ":", "theme", ".", "palette", ".", "bases", ".", "A", ".", "main", ",", "C", ":", "theme", ".", "palette", ".", "bases", ".", "C", ".", "main", ",", "G", ":", "theme", ".", "palette", ".", "bases", ".", "G", ".", "main", ",", "T", ":", "theme", ".", "palette", ".", "bases", ".", "T", ".", "main", ",", "total", ":", "'lightgrey'", ",", "insertion", ":", "'purple'", ",", "softclip", ":", "'blue'", ",", "hardclip", ":", "'red'", ",", "meth", ":", "'red'", ",", "unmeth", ":", "'blue'", ",", "ref", ":", "'lightgrey'", ",", "}", ";", "const", "feats", "=", "[", "...", "features", ".", "values", "(", ")", "]", ";", "const", "coverage", "=", "feats", ".", "filter", "(", "f", "=>", "f", ".", "get", "(", "'type'", ")", "!==", "'skip'", ")", ";", "const", "skips", "=", "feats", ".", "filter", "(", "f", "=>", "f", ".", "get", "(", "'type'", ")", "===", "'skip'", ")", ";", "ctx", ".", "fillStyle", "=", "colorForBase", ".", "total", ";", "coverage", ".", "forEach", "(", "feature", "=>", "{", "const", "[", "leftPx", ",", "rightPx", "]", "=", "featureSpanPx", "(", "feature", ",", "region", ",", "bpPerPx", ")", ";", "const", "w", "=", "rightPx", "-", "leftPx", "+", "0.3", ";", "const", "score", "=", "feature", ".", "get", "(", "'score'", ")", "as", "number", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "toY", "(", "score", ")", ",", "w", ",", "toHeight", "(", "score", ")", ")", ";", "}", ")", ";", "ctx", ".", "fillStyle", "=", "'grey'", ";", "ctx", ".", "beginPath", "(", ")", ";", "ctx", ".", "lineTo", "(", "0", ",", "0", ")", ";", "ctx", ".", "moveTo", "(", "0", ",", "width", ")", ";", "ctx", ".", "stroke", "(", ")", ";", "coverage", ".", "forEach", "(", "feature", "=>", "{", "const", "[", "leftPx", ",", "rightPx", "]", "=", "featureSpanPx", "(", "feature", ",", "region", ",", "bpPerPx", ")", ";", "const", "snpinfo", "=", "feature", ".", "get", "(", "'snpinfo'", ")", "as", "SNPInfo", ";", "const", "w", "=", "Math", ".", "max", "(", "rightPx", "-", "leftPx", "+", "0.3", ",", "1", ")", ";", "const", "totalScore", "=", "snpinfo", ".", "total", ";", "Object", ".", "entries", "(", "snpinfo", ".", "cov", ")", ".", "sort", "(", "(", "[", "a", "]", ",", "[", "b", "]", ")", "=>", "{", "if", "(", "a", "<", "b", ")", "{", "return", "-", "1", ";", "}", "if", "(", "a", ">", "b", ")", "{", "return", "1", ";", "}", "return", "0", ";", "}", ")", ".", "reduce", "(", "(", "curr", ",", "[", "base", ",", "{", "total", "}", "]", ")", "=>", "{", "ctx", ".", "fillStyle", "=", "colorForBase", "[", "base", "]", "||", "modificationTagMap", "[", "base", ".", "replace", "(", "'mod_'", ",", "''", ")", "]", "||", "'red'", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "snpToY", "(", "total", "+", "curr", ")", ",", "w", ",", "snpToHeight", "(", "total", ")", ")", ";", "return", "curr", "+", "total", ";", "}", ",", "0", ")", ";", "const", "interbaseEvents", "=", "Object", ".", "entries", "(", "snpinfo", ".", "noncov", ")", ";", "const", "indicatorHeight", "=", "4.5", ";", "if", "(", "drawInterbaseCounts", ")", "{", "interbaseEvents", ".", "reduce", "(", "(", "curr", ",", "[", "base", ",", "{", "total", "}", "]", ")", "=>", "{", "ctx", ".", "fillStyle", "=", "colorForBase", "[", "base", "]", ";", "ctx", ".", "fillRect", "(", "leftPx", "-", "0.6", ",", "indicatorHeight", "+", "snpToHeight", "(", "curr", ")", ",", "1.2", ",", "snpToHeight", "(", "total", ")", ")", ";", "return", "curr", "+", "total", ";", "}", ",", "0", ")", ";", "}", "if", "(", "drawIndicators", ")", "{", "let", "accum", "=", "0", ";", "let", "max", "=", "0", ";", "let", "maxBase", "=", "''", ";", "interbaseEvents", ".", "forEach", "(", "(", "[", "base", ",", "{", "total", "}", "]", ")", "=>", "{", "accum", "+=", "total", ";", "if", "(", "total", ">", "max", ")", "{", "max", "=", "total", ";", "maxBase", "=", "base", ";", "}", "}", ")", ";", "if", "(", "accum", ">", "totalScore", "*", "indicatorThreshold", "&&", "totalScore", ">", "7", ")", "{", "ctx", ".", "fillStyle", "=", "colorForBase", "[", "maxBase", "]", ";", "ctx", ".", "beginPath", "(", ")", ";", "ctx", ".", "moveTo", "(", "leftPx", "-", "3", ",", "0", ")", ";", "ctx", ".", "lineTo", "(", "leftPx", "+", "3", ",", "0", ")", ";", "ctx", ".", "lineTo", "(", "leftPx", ",", "indicatorHeight", ")", ";", "ctx", ".", "fill", "(", ")", ";", "}", "}", "}", ")", ";", "ctx", ".", "globalAlpha", "=", "0.7", ";", "if", "(", "drawArcs", ")", "{", "skips", ".", "forEach", "(", "f", "=>", "{", "const", "[", "left", ",", "right", "]", "=", "bpSpanPx", "(", "f", ".", "get", "(", "'start'", ")", ",", "f", ".", "get", "(", "'end'", ")", ",", "region", ",", "bpPerPx", ")", ";", "ctx", ".", "beginPath", "(", ")", ";", "const", "str", "=", "f", ".", "get", "(", "'strand'", ")", "as", "number", ";", "const", "xs", "=", "f", ".", "get", "(", "'xs'", ")", "as", "string", ";", "const", "pos", "=", "'rgb(255,200,200)'", ";", "const", "neg", "=", "'rgb(200,200,255)'", ";", "const", "neutral", "=", "'rgb(200,200,200)'", ";", "if", "(", "xs", "===", "'+'", ")", "{", "ctx", ".", "strokeStyle", "=", "pos", ";", "}", "else", "if", "(", "xs", "===", "'-'", ")", "{", "ctx", ".", "strokeStyle", "=", "neg", ";", "}", "else", "if", "(", "str", "===", "1", ")", "{", "ctx", ".", "strokeStyle", "=", "pos", ";", "}", "else", "if", "(", "str", "===", "-", "1", ")", "{", "ctx", ".", "strokeStyle", "=", "neg", ";", "}", "else", "{", "ctx", ".", "strokeStyle", "=", "neutral", ";", "}", "ctx", ".", "lineWidth", "=", "Math", ".", "log", "(", "f", ".", "get", "(", "'score'", ")", "+", "1", ")", ";", "ctx", ".", "moveTo", "(", "left", ",", "height", "-", "offset", "*", "2", ")", ";", "ctx", ".", "bezierCurveTo", "(", "left", ",", "0", ",", "right", ",", "0", ",", "right", ",", "height", "-", "offset", "*", "2", ")", ";", "ctx", ".", "stroke", "(", ")", ";", "}", ")", ";", "}", "if", "(", "displayCrossHatches", ")", "{", "ctx", ".", "lineWidth", "=", "1", ";", "ctx", ".", "strokeStyle", "=", "'rgba(140,140,140,0.8)'", ";", "values", ".", "forEach", "(", "tick", "=>", "{", "ctx", ".", "beginPath", "(", ")", ";", "ctx", ".", "moveTo", "(", "0", ",", "Math", ".", "round", "(", "toY", "(", "tick", ")", ")", ")", ";", "ctx", ".", "lineTo", "(", "width", ",", "Math", ".", "round", "(", "toY", "(", "tick", ")", ")", ")", ";", "ctx", ".", "stroke", "(", ")", ";", "}", ")", ";", "}", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 115, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660137
[ "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "ConfigSchema", "from", "'./configSchema'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "SNPCoverageRenderer", "from", "'./SNPCoverageRenderer'", ";", "import", "{", "WiggleRendering", "}", "from", "'@jbrowse/plugin-wiggle'", ";", "export", "const", "configSchema", "=", "ConfigurationSchema", "(", "'SNPCoverageRenderer'", ",", "{", "}", ",", "{", "baseConfiguration", ":", "ConfigSchema", ",", "explicitlyTyped", ":", "true", "}", ")", ";", "export", "default", "function", "register", "(", "pluginManager", ")", "{", "pluginManager", ".", "addRendererType", "(", "(", ")", "=>", "new", "SNPCoverageRenderer", "(", "{", "name", ":", "'SNPCoverageRenderer'", ",", "ReactComponent", ":", "WiggleRendering", ",", "configSchema", ",", "pluginManager", ",", "}", ")", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660138
[ "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "doesIntersect2", "}", "from", "'@jbrowse/core/util/range'", ";", "import", "{", "Mismatch", "}", "from", "'../BamAdapter/MismatchParser'", ";", "interface", "SortObject", "{", "pos", ":", "number", ";", "type", ":", "string", ";", "tag", "?", ":", "string", ";", "}", "export", "const", "sortFeature", "=", "(", "features", ",", "sortedBy", ")", "=>", "{", "const", "featureArray", "=", "Array", ".", "from", "(", "features", ".", "values", "(", ")", ")", ";", "const", "featuresInCenterLine", "=", "[", "]", ";", "const", "featuresOutsideCenter", "=", "[", "]", ";", "const", "{", "pos", ",", "type", "}", "=", "sortedBy", ";", "featureArray", ".", "forEach", "(", "innerArray", "=>", "{", "const", "feature", "=", "innerArray", ";", "const", "start", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "end", "=", "feature", ".", "get", "(", "'end'", ")", ";", "if", "(", "doesIntersect2", "(", "pos", "-", "1", ",", "pos", ",", "start", ",", "end", ")", ")", "{", "featuresInCenterLine", ".", "push", "(", "innerArray", ")", ";", "}", "else", "{", "featuresOutsideCenter", ".", "push", "(", "innerArray", ")", ";", "}", "}", ")", ";", "const", "isCram", "=", "featureArray", ".", "length", "?", "featureArray", "[", "0", "]", ".", "get", "(", "'tags'", ")", ":", "false", ";", "switch", "(", "type", ")", "{", "case", "'Start location'", ":", "{", "featuresInCenterLine", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "get", "(", "'start'", ")", "-", "b", ".", "get", "(", "'start'", ")", ")", ";", "break", ";", "}", "case", "'tag'", ":", "{", "const", "tag", "=", "sortedBy", ".", "tag", "as", "string", ";", "const", "getTag", "=", "(", "f", ",", "t", ")", "=>", "{", "return", "isCram", "?", "f", ".", "get", "(", "'tags'", ")", "[", "t", "]", ":", "f", ".", "get", "(", "t", ")", ";", "}", ";", "const", "isString", "=", "featuresInCenterLine", "[", "0", "]", "&&", "typeof", "getTag", "(", "featuresInCenterLine", "[", "0", "]", ",", "tag", ")", "===", "'string'", ";", "if", "(", "isString", ")", "{", "featuresInCenterLine", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "getTag", "(", "b", ",", "tag", ")", ".", "localeCompare", "(", "getTag", "(", "a", ",", "tag", ")", ")", ")", ";", "}", "else", "{", "featuresInCenterLine", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "(", "getTag", "(", "b", ",", "tag", ")", "||", "0", ")", "-", "(", "getTag", "(", "a", ",", "tag", ")", "||", "0", ")", ")", ";", "}", "break", ";", "}", "case", "'Base pair'", ":", "{", "const", "baseSortArray", "=", "[", "]", ";", "featuresInCenterLine", ".", "forEach", "(", "feature", "=>", "{", "const", "mismatches", "=", "feature", ".", "get", "(", "'mismatches'", ")", ";", "mismatches", ".", "forEach", "(", "mismatch", "=>", "{", "const", "start", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "offset", "=", "start", "+", "mismatch", ".", "start", "+", "1", ";", "const", "consuming", "=", "mismatch", ".", "type", "===", "'insertion'", "||", "mismatch", ".", "type", "===", "'softclip'", ";", "const", "len", "=", "consuming", "?", "0", ":", "mismatch", ".", "length", ";", "if", "(", "pos", ">=", "offset", "&&", "pos", "<", "offset", "+", "len", ")", "{", "baseSortArray", ".", "push", "(", "[", "feature", ".", "id", "(", ")", ",", "mismatch", "]", ")", ";", "}", "}", ")", ";", "}", ")", ";", "const", "baseMap", "=", "new", "Map", "(", "baseSortArray", ")", ";", "featuresInCenterLine", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "{", "const", "aMismatch", "=", "baseMap", ".", "get", "(", "a", ".", "id", "(", ")", ")", ";", "const", "bMismatch", "=", "baseMap", ".", "get", "(", "b", ".", "id", "(", ")", ")", ";", "const", "acode", "=", "bMismatch", "&&", "bMismatch", ".", "base", ".", "toUpperCase", "(", ")", ";", "const", "bcode", "=", "aMismatch", "&&", "aMismatch", ".", "base", ".", "toUpperCase", "(", ")", ";", "if", "(", "acode", "===", "bcode", "&&", "acode", "===", "'*'", ")", "{", "return", "aMismatch", ".", "length", "-", "bMismatch", ".", "length", ";", "}", "return", "(", "(", "acode", "?", "acode", ".", "charCodeAt", "(", "0", ")", ":", "0", ")", "-", "(", "bcode", "?", "bcode", ".", "charCodeAt", "(", "0", ")", ":", "0", ")", ")", ";", "}", ")", ";", "break", ";", "}", "case", "'Read strand'", ":", "{", "featuresInCenterLine", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "get", "(", "'strand'", ")", "<=", "b", ".", "get", "(", "'strand'", ")", "?", "1", ":", "-", "1", ")", ";", "break", ";", "}", "}", "const", "sortedMap", "=", "new", "Map", "(", "featuresInCenterLine", ".", "concat", "(", "featuresOutsideCenter", ")", ".", "map", "(", "feature", "=>", "[", "feature", ".", "id", "(", ")", ",", "feature", "]", ")", ")", ";", "return", "sortedMap", ";", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 19, null, null, 19, null, 0, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 536, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 19, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 19, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660139
[ "import", "deepEqual", "from", "'fast-deep-equal'", ";", "import", "{", "LayoutSession", "}", "from", "'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'", ";", "import", "{", "AnyConfigurationModel", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "import", "SerializableFilterChain", "from", "'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'", ";", "import", "GranularRectLayout", "from", "'@jbrowse/core/util/layouts/GranularRectLayout'", ";", "import", "MultiLayout", "from", "'@jbrowse/core/util/layouts/MultiLayout'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "export", "interface", "PileupLayoutSessionProps", "{", "config", ":", "AnyConfigurationModel", ";", "bpPerPx", ":", "number", ";", "filters", ":", "SerializableFilterChain", ";", "sortedBy", ":", "unknown", ";", "showSoftClip", ":", "unknown", ";", "}", "type", "MyMultiLayout", "=", "MultiLayout", "<", "GranularRectLayout", "<", "unknown", ">", ",", "unknown", ">", ";", "interface", "CachedPileupLayout", "{", "layout", ":", "MyMultiLayout", ";", "config", ":", "AnyConfigurationModel", ";", "filters", ":", "SerializableFilterChain", ";", "sortedBy", ":", "unknown", ";", "showSoftClip", ":", "boolean", ";", "}", "export", "class", "PileupLayoutSession", "extends", "LayoutSession", "{", "sortedBy", ":", "unknown", ";", "showSoftClip", "=", "false", ";", "constructor", "(", "args", ")", "{", "super", "(", "args", ")", ";", "this", ".", "config", "=", "args", ".", "config", ";", "}", "cachedLayoutIsValid", "(", "cachedLayout", ")", "{", "return", "(", "super", ".", "cachedLayoutIsValid", "(", "cachedLayout", ")", "&&", "this", ".", "showSoftClip", "===", "cachedLayout", ".", "showSoftClip", "&&", "deepEqual", "(", "this", ".", "sortedBy", ",", "cachedLayout", ".", "sortedBy", ")", ")", ";", "}", "cachedLayout", ":", "CachedPileupLayout", "|", "undefined", ";", "get", "layout", "(", ")", ":", "MyMultiLayout", "{", "if", "(", "!", "this", ".", "cachedLayout", "||", "!", "this", ".", "cachedLayoutIsValid", "(", "this", ".", "cachedLayout", ")", ")", "{", "this", ".", "cachedLayout", "=", "{", "layout", ":", "this", ".", "makeLayout", "(", ")", ",", "config", ":", "readConfObject", "(", "this", ".", "config", ")", ",", "filters", ":", "this", ".", "filters", ",", "sortedBy", ":", "this", ".", "sortedBy", ",", "showSoftClip", ":", "this", ".", "showSoftClip", ",", "}", ";", "}", "return", "this", ".", "cachedLayout", ".", "layout", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660140
[ "import", "{", "AnyConfigurationModel", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "import", "{", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "BoxRendererType", ",", "{", "RenderArgs", ",", "RenderArgsSerialized", ",", "RenderArgsDeserialized", "as", "BoxRenderArgsDeserialized", ",", "RenderResults", ",", "ResultsSerialized", ",", "ResultsDeserialized", ",", "}", "from", "'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'", ";", "import", "{", "Theme", "}", "from", "'@material-ui/core'", ";", "import", "{", "createJBrowseTheme", "}", "from", "'@jbrowse/core/ui'", ";", "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "bpSpanPx", ",", "iterMap", "}", "from", "'@jbrowse/core/util'", ";", "import", "Color", "from", "'color'", ";", "import", "{", "Region", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "{", "renderToAbstractCanvas", "}", "from", "'@jbrowse/core/util/offscreenCanvasUtils'", ";", "import", "{", "BaseLayout", "}", "from", "'@jbrowse/core/util/layouts/BaseLayout'", ";", "import", "{", "getAdapter", "}", "from", "'@jbrowse/core/data_adapters/dataAdapterCache'", ";", "import", "{", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "Mismatch", ",", "parseCigar", ",", "getModificationPositions", ",", "getNextRefPos", ",", "}", "from", "'../BamAdapter/MismatchParser'", ";", "import", "{", "sortFeature", "}", "from", "'./sortUtil'", ";", "import", "{", "getTagAlt", ",", "orientationTypes", "}", "from", "'../util'", ";", "import", "{", "PileupLayoutSession", ",", "PileupLayoutSessionProps", ",", "}", "from", "'./PileupLayoutSession'", ";", "import", "{", "BaseFeatureDataAdapter", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "function", "getColorBaseMap", "(", "theme", ")", "{", "return", "{", "A", ":", "theme", ".", "palette", ".", "bases", ".", "A", ".", "main", ",", "C", ":", "theme", ".", "palette", ".", "bases", ".", "C", ".", "main", ",", "G", ":", "theme", ".", "palette", ".", "bases", ".", "G", ".", "main", ",", "T", ":", "theme", ".", "palette", ".", "bases", ".", "T", ".", "main", ",", "deletion", ":", "'#808080'", ",", "}", ";", "}", "export", "interface", "RenderArgsDeserialized", "extends", "BoxRenderArgsDeserialized", "{", "colorBy", "?", ":", "{", "type", ":", "string", ";", "tag", "?", ":", "string", ";", "}", ";", "colorTagMap", "?", ":", "Record", "<", "string", ",", "string", ">", ";", "modificationTagMap", "?", ":", "Record", "<", "string", ",", "string", ">", ";", "sortedBy", "?", ":", "{", "type", ":", "string", ";", "pos", ":", "number", ";", "refName", ":", "string", ";", "assemblyName", ":", "string", ";", "tag", "?", ":", "string", ";", "}", ";", "showSoftClip", ":", "boolean", ";", "highResolutionScaling", ":", "number", ";", "}", "export", "interface", "RenderArgsDeserializedWithFeaturesAndLayout", "extends", "RenderArgsDeserialized", "{", "features", ":", "Map", "<", "string", ",", "Feature", ">", ";", "layout", ":", "BaseLayout", "<", "Feature", ">", ";", "regionSequence", "?", ":", "string", ";", "}", "interface", "LayoutRecord", "{", "feature", ":", "Feature", ";", "leftPx", ":", "number", ";", "rightPx", ":", "number", ";", "topPx", ":", "number", ";", "heightPx", ":", "number", ";", "}", "const", "alignmentColoring", "=", "{", "color_fwd_strand_not_proper", ":", "'#ECC8C8'", ",", "color_rev_strand_not_proper", ":", "'#BEBED8'", ",", "color_fwd_strand", ":", "'#EC8B8B'", ",", "color_rev_strand", ":", "'#8F8FD8'", ",", "color_fwd_missing_mate", ":", "'#D11919'", ",", "color_rev_missing_mate", ":", "'#1919D1'", ",", "color_fwd_diff_chr", ":", "'#000'", ",", "color_rev_diff_chr", ":", "'#969696'", ",", "color_pair_lr", ":", "'#c8c8c8'", ",", "color_pair_rr", ":", "'navy'", ",", "color_pair_rl", ":", "'teal'", ",", "color_pair_ll", ":", "'green'", ",", "color_nostrand", ":", "'#c8c8c8'", ",", "color_interchrom", ":", "'orange'", ",", "color_longinsert", ":", "'red'", ",", "color_shortinsert", ":", "'pink'", ",", "}", ";", "interface", "LayoutFeature", "{", "heightPx", ":", "number", ";", "topPx", ":", "number", ";", "feature", ":", "Feature", ";", "}", "function", "shouldDrawMismatches", "(", "type", "?", ")", "{", "return", "!", "[", "'methylation'", ",", "'modifications'", "]", ".", "includes", "(", "type", "||", "''", ")", ";", "}", "export", "default", "class", "PileupRenderer", "extends", "BoxRendererType", "{", "supportsSVG", "=", "true", ";", "getCharWidthHeight", "(", "ctx", ")", "{", "const", "charWidth", "=", "ctx", ".", "measureText", "(", "'A'", ")", ".", "width", ";", "const", "charHeight", "=", "ctx", ".", "measureText", "(", "'M'", ")", ".", "width", ";", "return", "{", "charWidth", ",", "charHeight", "}", ";", "}", "layoutFeature", "(", "{", "feature", ",", "layout", ",", "bpPerPx", ",", "region", ",", "showSoftClip", ",", "heightPx", ",", "displayMode", ",", "}", ")", "{", "let", "expansionBefore", "=", "0", ";", "let", "expansionAfter", "=", "0", ";", "if", "(", "showSoftClip", ")", "{", "const", "mismatches", "=", "feature", ".", "get", "(", "'mismatches'", ")", "as", "Mismatch", "[", "]", ";", "const", "seq", "=", "feature", ".", "get", "(", "'seq'", ")", "as", "string", ";", "if", "(", "seq", ")", "{", "for", "(", "let", "i", "=", "0", ";", "i", "<", "mismatches", ".", "length", ";", "i", "+=", "1", ")", "{", "const", "{", "type", ",", "start", ",", "cliplen", "=", "0", "}", "=", "mismatches", "[", "i", "]", ";", "if", "(", "type", "===", "'softclip'", ")", "{", "start", "===", "0", "?", "(", "expansionBefore", "=", "cliplen", ")", ":", "(", "expansionAfter", "=", "cliplen", ")", ";", "}", "}", "}", "}", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "feature", ".", "get", "(", "'start'", ")", "-", "expansionBefore", ",", "feature", ".", "get", "(", "'end'", ")", "+", "expansionAfter", ",", "region", ",", "bpPerPx", ")", ";", "if", "(", "displayMode", "===", "'compact'", ")", "{", "heightPx", "/=", "3", ";", "}", "if", "(", "feature", ".", "get", "(", "'refName'", ")", "!==", "region", ".", "refName", ")", "{", "throw", "new", "Error", "(", "`feature ${", "feature", ".", "id", "(", ")", "} is not on the current region's reference sequence ${", "region", ".", "refName", "}`", ")", ";", "}", "const", "topPx", "=", "layout", ".", "addRect", "(", "feature", ".", "id", "(", ")", ",", "feature", ".", "get", "(", "'start'", ")", "-", "expansionBefore", ",", "feature", ".", "get", "(", "'end'", ")", "+", "expansionAfter", ",", "heightPx", ")", ";", "if", "(", "topPx", "===", "null", ")", "{", "return", "null", ";", "}", "return", "{", "feature", ",", "leftPx", ",", "rightPx", ",", "topPx", ":", "displayMode", "===", "'collapse'", "?", "0", ":", "topPx", ",", "heightPx", ",", "}", ";", "}", "getExpandedRegion", "(", "region", ",", "renderArgs", ")", "{", "const", "{", "config", ",", "showSoftClip", "}", "=", "renderArgs", ";", "const", "maxClippingSize", "=", "readConfObject", "(", "config", ",", "'maxClippingSize'", ")", ";", "const", "{", "start", ",", "end", "}", "=", "region", ";", "const", "len", "=", "end", "-", "start", ";", "const", "bpExpansion", "=", "Math", ".", "max", "(", "len", ",", "showSoftClip", "?", "Math", ".", "round", "(", "maxClippingSize", ")", ":", "0", ")", ";", "return", "{", "...", "region", ",", "start", ":", "Math", ".", "floor", "(", "Math", ".", "max", "(", "start", "-", "bpExpansion", ",", "0", ")", ")", ",", "end", ":", "Math", ".", "ceil", "(", "end", "+", "bpExpansion", ")", ",", "}", ";", "}", "colorByOrientation", "(", "feature", ",", "config", ")", "{", "return", "alignmentColoring", "[", "this", ".", "getOrientation", "(", "feature", ",", "config", ")", "||", "'color_nostrand'", "]", ";", "}", "getOrientation", "(", "feature", ",", "config", ")", "{", "const", "orientationType", "=", "readConfObject", "(", "config", ",", "'orientationType'", ")", "as", "'fr'", "|", "'ff'", "|", "'rf'", ";", "const", "type", "=", "orientationTypes", "[", "orientationType", "]", ";", "const", "orientation", "=", "type", "[", "feature", ".", "get", "(", "'pair_orientation'", ")", "as", "string", "]", ";", "const", "map", "=", "{", "LR", ":", "'color_pair_lr'", ",", "RR", ":", "'color_pair_rr'", ",", "RL", ":", "'color_pair_rl'", ",", "LL", ":", "'color_pair_ll'", ",", "}", ";", "return", "map", "[", "orientation", "]", ";", "}", "colorByInsertSize", "(", "feature", ",", "_config", ")", "{", "return", "feature", ".", "get", "(", "'is_paired'", ")", "&&", "feature", ".", "get", "(", "'seq_id'", ")", "!==", "feature", ".", "get", "(", "'next_seq_id'", ")", "?", "'#555'", ":", "`hsl(${", "Math", ".", "abs", "(", "feature", ".", "get", "(", "'template_length'", ")", ")", "/", "10", "},50%,50%)`", ";", "}", "colorByStranded", "(", "feature", ",", "_config", ")", "{", "const", "flags", "=", "feature", ".", "get", "(", "'flags'", ")", ";", "const", "strand", "=", "feature", ".", "get", "(", "'strand'", ")", ";", "if", "(", "flags", "&", "1", ")", "{", "const", "revflag", "=", "flags", "&", "64", ";", "const", "flipper", "=", "revflag", "?", "-", "1", ":", "1", ";", "if", "(", "flags", "&", "2", ")", "{", "return", "strand", "*", "flipper", "===", "1", "?", "'color_rev_strand'", ":", "'color_fwd_strand'", ";", "}", "if", "(", "feature", ".", "get", "(", "'multi_segment_next_segment_unmapped'", ")", ")", "{", "return", "strand", "*", "flipper", "===", "1", "?", "'color_rev_missing_mate'", ":", "'color_fwd_missing_mate'", ";", "}", "if", "(", "feature", ".", "get", "(", "'seq_id'", ")", "===", "feature", ".", "get", "(", "'next_seq_id'", ")", ")", "{", "return", "strand", "*", "flipper", "===", "1", "?", "'color_rev_strand_not_proper'", ":", "'color_fwd_strand_not_proper'", ";", "}", "return", "strand", "===", "1", "?", "'color_fwd_diff_chr'", ":", "'color_rev_diff_chr'", ";", "}", "return", "strand", "===", "1", "?", "'color_fwd_strand'", ":", "'color_rev_strand'", ";", "}", "colorByPerBaseQuality", "(", "ctx", ",", "feat", ",", "_config", ",", "region", ",", "bpPerPx", ")", "{", "const", "{", "feature", ",", "topPx", ",", "heightPx", "}", "=", "feat", ";", "const", "qual", "=", "feature", ".", "get", "(", "'qual'", ")", "||", "''", ";", "const", "scores", "=", "qual", ".", "split", "(", "' '", ")", ".", "map", "(", "val", "=>", "+", "val", ")", ";", "const", "cigarOps", "=", "parseCigar", "(", "feature", ".", "get", "(", "'CIGAR'", ")", ")", ";", "const", "width", "=", "1", "/", "bpPerPx", ";", "const", "start", "=", "feature", ".", "get", "(", "'start'", ")", ";", "for", "(", "let", "i", "=", "0", ",", "j", "=", "0", ",", "k", "=", "0", ";", "k", "<", "scores", ".", "length", ";", "i", "+=", "2", ",", "k", "++", ")", "{", "const", "len", "=", "+", "cigarOps", "[", "i", "]", ";", "const", "op", "=", "cigarOps", "[", "i", "+", "1", "]", ";", "if", "(", "op", "===", "'S'", "||", "op", "===", "'I'", ")", "{", "k", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'D'", "||", "op", "===", "'N'", ")", "{", "j", "+=", "len", ";", "}", "else", "if", "(", "op", "===", "'M'", "||", "op", "===", "'X'", "||", "op", "===", "'='", ")", "{", "for", "(", "let", "m", "=", "0", ";", "m", "<", "len", ";", "m", "++", ")", "{", "const", "score", "=", "scores", "[", "k", "+", "m", "]", ";", "ctx", ".", "fillStyle", "=", "`hsl(${", "score", "===", "255", "?", "150", ":", "score", "*", "1.5", "},55%,50%)`", ";", "const", "[", "leftPx", "]", "=", "bpSpanPx", "(", "start", "+", "j", "+", "m", ",", "start", "+", "j", "+", "m", "+", "1", ",", "region", ",", "bpPerPx", ")", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "width", "+", "0.5", ",", "heightPx", ")", ";", "}", "j", "+=", "len", ";", "}", "}", "}", "colorByModifications", "(", "ctx", ",", "layoutFeature", ",", "_config", ",", "region", ",", "bpPerPx", ",", "props", ")", "{", "const", "{", "feature", ",", "topPx", ",", "heightPx", "}", "=", "layoutFeature", ";", "const", "{", "modificationTagMap", "=", "{", "}", "}", "=", "props", ";", "const", "mm", "=", "(", "getTagAlt", "(", "feature", ",", "'MM'", ",", "'Mm'", ")", "as", "string", ")", "||", "''", ";", "const", "ml", "=", "(", "getTagAlt", "(", "feature", ",", "'ML'", ",", "'Ml'", ")", "as", "number", "[", "]", "|", "string", ")", "||", "[", "]", ";", "const", "probabilities", "=", "ml", "?", "(", "typeof", "ml", "===", "'string'", "?", "ml", ".", "split", "(", "','", ")", ".", "map", "(", "e", "=>", "+", "e", ")", ":", "ml", ")", ".", "map", "(", "e", "=>", "e", "/", "255", ")", ":", "(", "getTagAlt", "(", "feature", ",", "'MP'", ",", "'Mp'", ")", "as", "string", ")", ".", "split", "(", "''", ")", ".", "map", "(", "s", "=>", "s", ".", "charCodeAt", "(", "0", ")", "-", "33", ")", ".", "map", "(", "elt", "=>", "Math", ".", "min", "(", "1", ",", "elt", "/", "50", ")", ")", ";", "const", "cigar", "=", "feature", ".", "get", "(", "'CIGAR'", ")", ";", "const", "start", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "end", "=", "feature", ".", "get", "(", "'end'", ")", ";", "const", "seq", "=", "feature", ".", "get", "(", "'seq'", ")", ";", "const", "strand", "=", "feature", ".", "get", "(", "'strand'", ")", ";", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "const", "modifications", "=", "getModificationPositions", "(", "mm", ",", "seq", ",", "strand", ")", ";", "let", "probIndex", "=", "0", ";", "modifications", ".", "forEach", "(", "(", "{", "type", ",", "positions", "}", ")", "=>", "{", "const", "col", "=", "modificationTagMap", "[", "type", "]", "||", "'black'", ";", "const", "base", "=", "Color", "(", "col", ")", ";", "for", "(", "const", "readPos", "of", "getNextRefPos", "(", "cigarOps", ",", "positions", ")", ")", "{", "if", "(", "readPos", ">=", "0", "&&", "start", "+", "readPos", "<", "end", ")", "{", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "start", "+", "readPos", ",", "start", "+", "readPos", "+", "1", ",", "region", ",", "bpPerPx", ")", ";", "ctx", ".", "fillStyle", "=", "base", ".", "alpha", "(", "probabilities", "[", "probIndex", "]", "+", "0.1", ")", ".", "hsl", "(", ")", ".", "string", "(", ")", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "rightPx", "-", "leftPx", "+", "0.5", ",", "heightPx", ")", ";", "}", "probIndex", "++", ";", "}", "}", ")", ";", "}", "colorByMethylation", "(", "ctx", ",", "layoutFeature", ",", "_config", ",", "region", ",", "bpPerPx", ",", "props", ")", "{", "const", "{", "regionSequence", "}", "=", "props", ";", "const", "{", "feature", ",", "topPx", ",", "heightPx", "}", "=", "layoutFeature", ";", "const", "mm", "=", "getTagAlt", "(", "feature", ",", "'MM'", ",", "'Mm'", ")", "||", "''", ";", "if", "(", "!", "regionSequence", ")", "{", "throw", "new", "Error", "(", "'region sequence required for methylation'", ")", ";", "}", "const", "cigar", "=", "feature", ".", "get", "(", "'CIGAR'", ")", ";", "const", "fstart", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "fend", "=", "feature", ".", "get", "(", "'end'", ")", ";", "const", "seq", "=", "feature", ".", "get", "(", "'seq'", ")", ";", "const", "strand", "=", "feature", ".", "get", "(", "'strand'", ")", ";", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "const", "{", "start", ":", "rstart", ",", "end", ":", "rend", "}", "=", "region", ";", "const", "methBins", "=", "new", "Array", "(", "rend", "-", "rstart", ")", ".", "fill", "(", "0", ")", ";", "getModificationPositions", "(", "mm", ",", "seq", ",", "strand", ")", ".", "forEach", "(", "(", "{", "type", ",", "positions", "}", ")", "=>", "{", "if", "(", "type", "===", "'m'", "&&", "positions", ")", "{", "for", "(", "const", "pos", "of", "getNextRefPos", "(", "cigarOps", ",", "positions", ")", ")", "{", "const", "epos", "=", "pos", "+", "fstart", "-", "rstart", ";", "if", "(", "epos", ">=", "0", "&&", "epos", "<", "methBins", ".", "length", ")", "{", "methBins", "[", "epos", "]", "=", "1", ";", "}", "}", "}", "}", ")", ";", "for", "(", "let", "j", "=", "fstart", ";", "j", "<", "fend", ";", "j", "++", ")", "{", "const", "i", "=", "j", "-", "rstart", ";", "if", "(", "i", ">=", "0", "&&", "i", "<", "methBins", ".", "length", ")", "{", "const", "l1", "=", "regionSequence", "[", "i", "]", ".", "toLowerCase", "(", ")", ";", "const", "l2", "=", "regionSequence", "[", "i", "+", "1", "]", ".", "toLowerCase", "(", ")", ";", "if", "(", "bpPerPx", ">", "2", ")", "{", "if", "(", "l1", "===", "'c'", "&&", "l2", "===", "'g'", ")", "{", "const", "s", "=", "rstart", "+", "i", ";", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "s", ",", "s", "+", "2", ",", "region", ",", "bpPerPx", ")", ";", "if", "(", "methBins", "[", "i", "]", "||", "methBins", "[", "i", "+", "1", "]", ")", "{", "ctx", ".", "fillStyle", "=", "'red'", ";", "}", "else", "{", "ctx", ".", "fillStyle", "=", "'blue'", ";", "}", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "rightPx", "-", "leftPx", "+", "0.5", ",", "heightPx", ")", ";", "}", "}", "else", "{", "if", "(", "l1", "===", "'c'", "&&", "l2", "===", "'g'", ")", "{", "const", "s", "=", "rstart", "+", "i", ";", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "s", ",", "s", "+", "1", ",", "region", ",", "bpPerPx", ")", ";", "if", "(", "methBins", "[", "i", "]", ")", "{", "ctx", ".", "fillStyle", "=", "'red'", ";", "}", "else", "{", "ctx", ".", "fillStyle", "=", "'blue'", ";", "}", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "rightPx", "-", "leftPx", "+", "0.5", ",", "heightPx", ")", ";", "const", "[", "leftPx2", ",", "rightPx2", "]", "=", "bpSpanPx", "(", "s", "+", "1", ",", "s", "+", "2", ",", "region", ",", "bpPerPx", ")", ";", "if", "(", "methBins", "[", "i", "+", "1", "]", ")", "{", "ctx", ".", "fillStyle", "=", "'red'", ";", "}", "else", "{", "ctx", ".", "fillStyle", "=", "'blue'", ";", "}", "ctx", ".", "fillRect", "(", "leftPx2", ",", "topPx", ",", "rightPx2", "-", "leftPx2", "+", "0.5", ",", "heightPx", ")", ";", "}", "}", "}", "}", "}", "drawRect", "(", "ctx", ",", "feat", ",", "props", ")", "{", "const", "{", "regions", ",", "bpPerPx", "}", "=", "props", ";", "const", "{", "heightPx", ",", "topPx", ",", "feature", "}", "=", "feat", ";", "const", "[", "region", "]", "=", "regions", ";", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "feature", ".", "get", "(", "'start'", ")", ",", "feature", ".", "get", "(", "'end'", ")", ",", "region", ",", "bpPerPx", ")", ";", "const", "flip", "=", "region", ".", "reversed", "?", "-", "1", ":", "1", ";", "const", "strand", "=", "feature", ".", "get", "(", "'strand'", ")", "*", "flip", ";", "if", "(", "bpPerPx", "<", "10", ")", "{", "if", "(", "strand", "===", "-", "1", ")", "{", "ctx", ".", "beginPath", "(", ")", ";", "ctx", ".", "moveTo", "(", "leftPx", "-", "5", ",", "topPx", "+", "heightPx", "/", "2", ")", ";", "ctx", ".", "lineTo", "(", "leftPx", ",", "topPx", "+", "heightPx", ")", ";", "ctx", ".", "lineTo", "(", "rightPx", ",", "topPx", "+", "heightPx", ")", ";", "ctx", ".", "lineTo", "(", "rightPx", ",", "topPx", ")", ";", "ctx", ".", "lineTo", "(", "leftPx", ",", "topPx", ")", ";", "ctx", ".", "closePath", "(", ")", ";", "ctx", ".", "fill", "(", ")", ";", "}", "else", "{", "ctx", ".", "beginPath", "(", ")", ";", "ctx", ".", "moveTo", "(", "leftPx", ",", "topPx", ")", ";", "ctx", ".", "lineTo", "(", "leftPx", ",", "topPx", "+", "heightPx", ")", ";", "ctx", ".", "lineTo", "(", "rightPx", ",", "topPx", "+", "heightPx", ")", ";", "ctx", ".", "lineTo", "(", "rightPx", "+", "5", ",", "topPx", "+", "heightPx", "/", "2", ")", ";", "ctx", ".", "lineTo", "(", "rightPx", ",", "topPx", ")", ";", "ctx", ".", "closePath", "(", ")", ";", "ctx", ".", "fill", "(", ")", ";", "}", "}", "else", "{", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "rightPx", "-", "leftPx", ",", "heightPx", ")", ";", "}", "}", "drawAlignmentRect", "(", "ctx", ",", "feat", ",", "props", ")", "{", "const", "{", "defaultColor", ",", "config", ",", "bpPerPx", ",", "regions", ",", "colorBy", ",", "colorTagMap", "=", "{", "}", ",", "}", "=", "props", ";", "const", "{", "tag", "=", "''", ",", "type", ":", "colorType", "=", "''", "}", "=", "colorBy", "||", "{", "}", ";", "const", "{", "feature", "}", "=", "feat", ";", "const", "region", "=", "regions", "[", "0", "]", ";", "switch", "(", "colorType", ")", "{", "case", "'insertSize'", ":", "ctx", ".", "fillStyle", "=", "this", ".", "colorByInsertSize", "(", "feature", ",", "config", ")", ";", "break", ";", "case", "'strand'", ":", "ctx", ".", "fillStyle", "=", "feature", ".", "get", "(", "'strand'", ")", "===", "-", "1", "?", "'#8F8FD8'", ":", "'#EC8B8B'", ";", "break", ";", "case", "'mappingQuality'", ":", "ctx", ".", "fillStyle", "=", "`hsl(${", "feature", ".", "get", "(", "'mq'", ")", "},50%,50%)`", ";", "break", ";", "case", "'pairOrientation'", ":", "ctx", ".", "fillStyle", "=", "this", ".", "colorByOrientation", "(", "feature", ",", "config", ")", ";", "break", ";", "case", "'stranded'", ":", "ctx", ".", "fillStyle", "=", "alignmentColoring", "[", "this", ".", "colorByStranded", "(", "feature", ",", "config", ")", "]", ";", "break", ";", "case", "'xs'", ":", "case", "'tag'", ":", "{", "const", "tags", "=", "feature", ".", "get", "(", "'tags'", ")", ";", "const", "val", "=", "tags", "?", "tags", "[", "tag", "]", ":", "feature", ".", "get", "(", "tag", ")", ";", "if", "(", "tag", "===", "'XS'", "||", "tag", "===", "'TS'", ")", "{", "const", "map", "=", "{", "'-'", ":", "'color_rev_strand'", ",", "'+'", ":", "'color_fwd_strand'", ",", "}", ";", "ctx", ".", "fillStyle", "=", "alignmentColoring", "[", "map", "[", "val", "]", "||", "'color_nostrand'", "]", ";", "}", "if", "(", "tag", "===", "'ts'", ")", "{", "const", "map", "=", "{", "'-'", ":", "feature", ".", "get", "(", "'strand'", ")", "===", "-", "1", "?", "'color_fwd_strand'", ":", "'color_rev_strand'", ",", "'+'", ":", "feature", ".", "get", "(", "'strand'", ")", "===", "-", "1", "?", "'color_rev_strand'", ":", "'color_fwd_strand'", ",", "}", ";", "ctx", ".", "fillStyle", "=", "alignmentColoring", "[", "map", "[", "val", "]", "||", "'color_nostrand'", "]", ";", "}", "else", "{", "const", "foundValue", "=", "colorTagMap", "[", "val", "]", ";", "ctx", ".", "fillStyle", "=", "foundValue", "||", "alignmentColoring", "[", "'color_nostrand'", "]", ";", "}", "break", ";", "}", "case", "'insertSizeAndPairOrientation'", ":", "break", ";", "case", "'normal'", ":", "default", ":", "if", "(", "defaultColor", ")", "{", "ctx", ".", "fillStyle", "=", "'#c8c8c8'", ";", "}", "else", "{", "ctx", ".", "fillStyle", "=", "readConfObject", "(", "config", ",", "'color'", ",", "{", "feature", "}", ")", ";", "}", "break", ";", "}", "this", ".", "drawRect", "(", "ctx", ",", "feat", ",", "props", ")", ";", "switch", "(", "colorType", ")", "{", "case", "'perBaseQuality'", ":", "this", ".", "colorByPerBaseQuality", "(", "ctx", ",", "feat", ",", "config", ",", "region", ",", "bpPerPx", ")", ";", "break", ";", "case", "'modifications'", ":", "this", ".", "colorByModifications", "(", "ctx", ",", "feat", ",", "config", ",", "region", ",", "bpPerPx", ",", "props", ")", ";", "break", ";", "case", "'methylation'", ":", "this", ".", "colorByMethylation", "(", "ctx", ",", "feat", ",", "config", ",", "region", ",", "bpPerPx", ",", "props", ")", ";", "break", ";", "}", "}", "drawMismatches", "(", "ctx", ",", "feat", ",", "props", ",", "theme", ",", "colorForBase", ",", "opts", ")", "{", "const", "{", "minSubfeatureWidth", ":", "minWidth", ",", "largeInsertionIndicatorScale", ",", "mismatchAlpha", ",", "drawSNPs", "=", "true", ",", "drawIndels", "=", "true", ",", "charWidth", ",", "charHeight", ",", "}", "=", "opts", ";", "const", "{", "bpPerPx", ",", "regions", "}", "=", "props", ";", "const", "{", "heightPx", ",", "topPx", ",", "feature", "}", "=", "feat", ";", "const", "[", "region", "]", "=", "regions", ";", "const", "start", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "pxPerBp", "=", "Math", ".", "min", "(", "1", "/", "bpPerPx", ",", "2", ")", ";", "const", "w", "=", "Math", ".", "max", "(", "minWidth", ",", "pxPerBp", ")", ";", "const", "mismatches", "=", "feature", ".", "get", "(", "'mismatches'", ")", ";", "const", "heightLim", "=", "charHeight", "-", "2", ";", "function", "getAlphaColor", "(", "baseColor", ",", "mismatch", ")", "{", "let", "color", "=", "baseColor", ";", "if", "(", "mismatchAlpha", "&&", "mismatch", ".", "qual", "!==", "undefined", ")", "{", "color", "=", "Color", "(", "baseColor", ")", ".", "alpha", "(", "Math", ".", "min", "(", "1", ",", "mismatch", ".", "qual", "/", "50", ")", ")", ".", "hsl", "(", ")", ".", "string", "(", ")", ";", "}", "return", "color", ";", "}", "for", "(", "let", "i", "=", "0", ";", "i", "<", "mismatches", ".", "length", ";", "i", "+=", "1", ")", "{", "const", "mismatch", "=", "mismatches", "[", "i", "]", ";", "const", "mstart", "=", "start", "+", "mismatch", ".", "start", ";", "const", "mlen", "=", "mismatch", ".", "length", ";", "const", "mbase", "=", "mismatch", ".", "base", ";", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "mstart", ",", "mstart", "+", "mlen", ",", "region", ",", "bpPerPx", ")", ";", "const", "widthPx", "=", "Math", ".", "max", "(", "minWidth", ",", "Math", ".", "abs", "(", "leftPx", "-", "rightPx", ")", ")", ";", "if", "(", "mismatch", ".", "type", "===", "'mismatch'", "&&", "drawSNPs", ")", "{", "const", "baseColor", "=", "colorForBase", "[", "mismatch", ".", "base", "]", "||", "'#888'", ";", "ctx", ".", "fillStyle", "=", "getAlphaColor", "(", "baseColor", ",", "mismatch", ")", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "widthPx", ",", "heightPx", ")", ";", "if", "(", "widthPx", ">=", "charWidth", "&&", "heightPx", ">=", "heightLim", ")", "{", "ctx", ".", "fillStyle", "=", "getAlphaColor", "(", "theme", ".", "palette", ".", "getContrastText", "(", "baseColor", ")", ",", "mismatch", ")", ";", "ctx", ".", "fillText", "(", "mbase", ",", "leftPx", "+", "(", "widthPx", "-", "charWidth", ")", "/", "2", "+", "1", ",", "topPx", "+", "heightPx", ")", ";", "}", "}", "else", "if", "(", "mismatch", ".", "type", "===", "'deletion'", "&&", "drawIndels", ")", "{", "const", "baseColor", "=", "colorForBase", ".", "deletion", ";", "ctx", ".", "fillStyle", "=", "baseColor", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", ",", "widthPx", ",", "heightPx", ")", ";", "if", "(", "widthPx", ">=", "charWidth", "&&", "heightPx", ">=", "heightLim", ")", "{", "ctx", ".", "fillStyle", "=", "theme", ".", "palette", ".", "getContrastText", "(", "baseColor", ")", ";", "ctx", ".", "fillText", "(", "mbase", ",", "leftPx", "+", "(", "widthPx", "-", "charWidth", ")", "/", "2", "+", "1", ",", "topPx", "+", "heightPx", ")", ";", "}", "}", "else", "if", "(", "mismatch", ".", "type", "===", "'insertion'", "&&", "drawIndels", ")", "{", "ctx", ".", "fillStyle", "=", "'purple'", ";", "const", "pos", "=", "leftPx", "-", "1", ";", "const", "len", "=", "+", "mismatch", ".", "base", "||", "mismatch", ".", "length", ";", "if", "(", "len", "<", "10", ")", "{", "ctx", ".", "fillRect", "(", "pos", ",", "topPx", ",", "w", ",", "heightPx", ")", ";", "if", "(", "1", "/", "bpPerPx", ">=", "charWidth", ")", "{", "ctx", ".", "fillRect", "(", "pos", "-", "w", ",", "topPx", ",", "w", "*", "3", ",", "1", ")", ";", "ctx", ".", "fillRect", "(", "pos", "-", "w", ",", "topPx", "+", "heightPx", "-", "1", ",", "w", "*", "3", ",", "1", ")", ";", "}", "if", "(", "1", "/", "bpPerPx", ">=", "charWidth", "&&", "heightPx", ">=", "heightLim", ")", "{", "ctx", ".", "fillText", "(", "`(${", "mismatch", ".", "base", "})`", ",", "leftPx", "+", "2", ",", "topPx", "+", "heightPx", ")", ";", "}", "}", "}", "else", "if", "(", "mismatch", ".", "type", "===", "'hardclip'", "||", "mismatch", ".", "type", "===", "'softclip'", ")", "{", "ctx", ".", "fillStyle", "=", "mismatch", ".", "type", "===", "'hardclip'", "?", "'red'", ":", "'blue'", ";", "const", "pos", "=", "leftPx", "-", "1", ";", "ctx", ".", "fillRect", "(", "pos", ",", "topPx", "+", "1", ",", "w", ",", "heightPx", "-", "2", ")", ";", "ctx", ".", "fillRect", "(", "pos", "-", "w", ",", "topPx", ",", "w", "*", "3", ",", "1", ")", ";", "ctx", ".", "fillRect", "(", "pos", "-", "w", ",", "topPx", "+", "heightPx", "-", "1", ",", "w", "*", "3", ",", "1", ")", ";", "if", "(", "widthPx", ">=", "charWidth", "&&", "heightPx", ">=", "heightLim", ")", "{", "ctx", ".", "fillText", "(", "`(${", "mismatch", ".", "base", "})`", ",", "leftPx", "+", "2", ",", "topPx", "+", "heightPx", ")", ";", "}", "}", "else", "if", "(", "mismatch", ".", "type", "===", "'skip'", ")", "{", "if", "(", "leftPx", "+", "widthPx", ">", "0", ")", "{", "ctx", ".", "clearRect", "(", "leftPx", ",", "topPx", ",", "widthPx", "-", "(", "bpPerPx", ">", "10", "?", "1.5", ":", "0", ")", ",", "heightPx", ")", ";", "}", "ctx", ".", "fillStyle", "=", "'#333'", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "topPx", "+", "heightPx", "/", "2", ",", "widthPx", ",", "2", ")", ";", "}", "}", "if", "(", "drawIndels", ")", "{", "for", "(", "let", "i", "=", "0", ";", "i", "<", "mismatches", ".", "length", ";", "i", "+=", "1", ")", "{", "const", "mismatch", "=", "mismatches", "[", "i", "]", ";", "const", "mstart", "=", "start", "+", "mismatch", ".", "start", ";", "const", "mlen", "=", "mismatch", ".", "length", ";", "const", "[", "leftPx", "]", "=", "bpSpanPx", "(", "mstart", ",", "mstart", "+", "mlen", ",", "region", ",", "bpPerPx", ")", ";", "const", "len", "=", "+", "mismatch", ".", "base", "||", "mismatch", ".", "length", ";", "const", "txt", "=", "`${", "len", "}`", ";", "if", "(", "mismatch", ".", "type", "===", "'insertion'", "&&", "len", ">=", "10", ")", "{", "if", "(", "bpPerPx", ">", "largeInsertionIndicatorScale", ")", "{", "ctx", ".", "fillStyle", "=", "'purple'", ";", "ctx", ".", "fillRect", "(", "leftPx", "-", "1", ",", "topPx", ",", "2", ",", "heightPx", ")", ";", "}", "else", "if", "(", "heightPx", ">", "charHeight", ")", "{", "const", "rect", "=", "ctx", ".", "measureText", "(", "txt", ")", ";", "const", "padding", "=", "5", ";", "ctx", ".", "fillStyle", "=", "'purple'", ";", "ctx", ".", "fillRect", "(", "leftPx", "-", "rect", ".", "width", "/", "2", "-", "padding", ",", "topPx", ",", "rect", ".", "width", "+", "2", "*", "padding", ",", "heightPx", ")", ";", "ctx", ".", "fillStyle", "=", "'white'", ";", "ctx", ".", "fillText", "(", "txt", ",", "leftPx", "-", "rect", ".", "width", "/", "2", ",", "topPx", "+", "heightPx", ")", ";", "}", "else", "{", "const", "padding", "=", "2", ";", "ctx", ".", "fillStyle", "=", "'purple'", ";", "ctx", ".", "fillRect", "(", "leftPx", "-", "padding", ",", "topPx", ",", "2", "*", "padding", ",", "heightPx", ")", ";", "}", "}", "}", "}", "}", "drawSoftClipping", "(", "ctx", ",", "feat", ",", "props", ",", "config", ",", "theme", ")", "{", "const", "{", "feature", ",", "topPx", ",", "heightPx", "}", "=", "feat", ";", "const", "{", "regions", ",", "bpPerPx", "}", "=", "props", ";", "const", "[", "region", "]", "=", "regions", ";", "const", "minFeatWidth", "=", "readConfObject", "(", "config", ",", "'minSubfeatureWidth'", ")", ";", "const", "mismatches", "=", "feature", ".", "get", "(", "'mismatches'", ")", ";", "const", "seq", "=", "feature", ".", "get", "(", "'seq'", ")", ";", "const", "{", "charWidth", ",", "charHeight", "}", "=", "this", ".", "getCharWidthHeight", "(", "ctx", ")", ";", "const", "colorForBase", "=", "{", "A", ":", "theme", ".", "palette", ".", "bases", ".", "A", ".", "main", ",", "C", ":", "theme", ".", "palette", ".", "bases", ".", "C", ".", "main", ",", "G", ":", "theme", ".", "palette", ".", "bases", ".", "G", ".", "main", ",", "T", ":", "theme", ".", "palette", ".", "bases", ".", "T", ".", "main", ",", "deletion", ":", "'#808080'", ",", "}", ";", "if", "(", "seq", ")", "{", "mismatches", ".", "filter", "(", "mismatch", "=>", "mismatch", ".", "type", "===", "'softclip'", ")", ".", "forEach", "(", "mismatch", "=>", "{", "const", "softClipLength", "=", "mismatch", ".", "cliplen", "||", "0", ";", "const", "softClipStart", "=", "mismatch", ".", "start", "===", "0", "?", "feature", ".", "get", "(", "'start'", ")", "-", "softClipLength", ":", "feature", ".", "get", "(", "'start'", ")", "+", "mismatch", ".", "start", ";", "for", "(", "let", "k", "=", "0", ";", "k", "<", "softClipLength", ";", "k", "+=", "1", ")", "{", "const", "base", "=", "seq", ".", "charAt", "(", "k", "+", "mismatch", ".", "start", ")", ";", "if", "(", "!", "base", ")", "{", "return", ";", "}", "const", "[", "softClipLeftPx", ",", "softClipRightPx", "]", "=", "bpSpanPx", "(", "softClipStart", "+", "k", ",", "softClipStart", "+", "k", "+", "1", ",", "region", ",", "bpPerPx", ")", ";", "const", "softClipWidthPx", "=", "Math", ".", "max", "(", "minFeatWidth", ",", "Math", ".", "abs", "(", "softClipLeftPx", "-", "softClipRightPx", ")", ")", ";", "const", "baseColor", "=", "colorForBase", "[", "base", "]", "||", "'#000000'", ";", "ctx", ".", "fillStyle", "=", "baseColor", ";", "ctx", ".", "fillRect", "(", "softClipLeftPx", ",", "topPx", ",", "softClipWidthPx", ",", "heightPx", ")", ";", "if", "(", "softClipWidthPx", ">=", "charWidth", "&&", "heightPx", ">=", "charHeight", "-", "5", ")", "{", "ctx", ".", "fillStyle", "=", "theme", ".", "palette", ".", "getContrastText", "(", "baseColor", ")", ";", "ctx", ".", "fillText", "(", "base", ",", "softClipLeftPx", "+", "(", "softClipWidthPx", "-", "charWidth", ")", "/", "2", "+", "1", ",", "topPx", "+", "heightPx", ")", ";", "}", "}", "}", ")", ";", "}", "}", "async", "makeImageData", "(", "ctx", ",", "layoutRecords", ",", "props", ")", "{", "const", "{", "layout", ",", "config", ",", "showSoftClip", ",", "colorBy", ",", "theme", ":", "configTheme", "}", "=", "props", ";", "const", "mismatchAlpha", "=", "readConfObject", "(", "config", ",", "'mismatchAlpha'", ")", ";", "const", "minSubfeatureWidth", "=", "readConfObject", "(", "config", ",", "'minSubfeatureWidth'", ")", ";", "const", "insertScale", "=", "readConfObject", "(", "config", ",", "'largeInsertionIndicatorScale'", ")", ";", "const", "defaultColor", "=", "readConfObject", "(", "config", ",", "'color'", ")", "===", "'#f0f'", ";", "const", "theme", "=", "createJBrowseTheme", "(", "configTheme", ")", ";", "const", "colorForBase", "=", "getColorBaseMap", "(", "theme", ")", ";", "if", "(", "!", "layout", ")", "{", "throw", "new", "Error", "(", "`layout required`", ")", ";", "}", "if", "(", "!", "layout", ".", "addRect", ")", "{", "throw", "new", "Error", "(", "'invalid layout object'", ")", ";", "}", "ctx", ".", "font", "=", "'bold 10px Courier New,monospace'", ";", "const", "{", "charWidth", ",", "charHeight", "}", "=", "this", ".", "getCharWidthHeight", "(", "ctx", ")", ";", "layoutRecords", ".", "forEach", "(", "feat", "=>", "{", "if", "(", "feat", "===", "null", ")", "{", "return", ";", "}", "this", ".", "drawAlignmentRect", "(", "ctx", ",", "feat", ",", "{", "...", "props", ",", "defaultColor", ",", "}", ")", ";", "this", ".", "drawMismatches", "(", "ctx", ",", "feat", ",", "props", ",", "theme", ",", "colorForBase", ",", "{", "mismatchAlpha", ",", "drawSNPs", ":", "shouldDrawMismatches", "(", "colorBy", "?.", "type", ")", ",", "drawIndels", ":", "shouldDrawMismatches", "(", "colorBy", "?.", "type", ")", ",", "largeInsertionIndicatorScale", ":", "insertScale", ",", "minSubfeatureWidth", ",", "charWidth", ",", "charHeight", ",", "}", ")", ";", "if", "(", "showSoftClip", ")", "{", "this", ".", "drawSoftClipping", "(", "ctx", ",", "feat", ",", "props", ",", "config", ",", "theme", ")", ";", "}", "}", ")", ";", "}", "layoutFeats", "(", "props", ")", "{", "const", "{", "layout", ",", "features", ",", "sortedBy", ",", "config", ",", "bpPerPx", ",", "showSoftClip", ",", "regions", ",", "}", "=", "props", ";", "const", "[", "region", "]", "=", "regions", ";", "if", "(", "!", "layout", ")", "{", "throw", "new", "Error", "(", "`layout required`", ")", ";", "}", "if", "(", "!", "layout", ".", "addRect", ")", "{", "throw", "new", "Error", "(", "'invalid layout object'", ")", ";", "}", "const", "featureMap", "=", "sortedBy", "?.", "type", "&&", "region", ".", "start", "===", "sortedBy", ".", "pos", "?", "sortFeature", "(", "features", ",", "sortedBy", ")", ":", "features", ";", "const", "heightPx", "=", "readConfObject", "(", "config", ",", "'height'", ")", ";", "const", "displayMode", "=", "readConfObject", "(", "config", ",", "'displayMode'", ")", ";", "const", "layoutRecords", "=", "iterMap", "(", "featureMap", ".", "values", "(", ")", ",", "feature", "=>", "this", ".", "layoutFeature", "(", "{", "feature", ",", "layout", ",", "bpPerPx", ",", "region", ",", "showSoftClip", ",", "heightPx", ",", "displayMode", ",", "}", ")", ",", "featureMap", ".", "size", ")", ";", "return", "layoutRecords", ";", "}", "async", "render", "(", "renderProps", ")", "{", "const", "{", "sessionId", ",", "bpPerPx", ",", "regions", ",", "adapterConfig", "}", "=", "renderProps", ";", "const", "{", "sequenceAdapter", "}", "=", "adapterConfig", ";", "const", "features", "=", "await", "this", ".", "getFeatures", "(", "renderProps", ")", ";", "const", "layout", "=", "this", ".", "createLayoutInWorker", "(", "renderProps", ")", ";", "const", "layoutRecords", "=", "this", ".", "layoutFeats", "(", "{", "...", "renderProps", ",", "features", ",", "layout", "}", ")", ";", "const", "[", "region", "]", "=", "regions", ";", "let", "regionSequence", ";", "const", "{", "end", ",", "start", ",", "originalRefName", ",", "refName", "}", "=", "region", ";", "if", "(", "sequenceAdapter", ")", "{", "const", "{", "dataAdapter", "}", "=", "await", "getAdapter", "(", "this", ".", "pluginManager", ",", "sessionId", ",", "sequenceAdapter", ")", ";", "const", "feats", "=", "await", "(", "dataAdapter", "as", "BaseFeatureDataAdapter", ")", ".", "getFeatures", "(", "{", "...", "region", ",", "refName", ":", "originalRefName", "||", "refName", ",", "end", ":", "region", ".", "end", "+", "1", ",", "}", ")", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "regionSequence", "=", "feats", "[", "0", "]", "?.", "get", "(", "'seq'", ")", ";", "}", "const", "width", "=", "(", "end", "-", "start", ")", "/", "bpPerPx", ";", "const", "height", "=", "Math", ".", "max", "(", "layout", ".", "getTotalHeight", "(", ")", ",", "1", ")", ";", "const", "res", "=", "await", "renderToAbstractCanvas", "(", "width", ",", "height", ",", "renderProps", ",", "(", "ctx", ")", "=>", "this", ".", "makeImageData", "(", "ctx", ",", "layoutRecords", ",", "{", "...", "renderProps", ",", "layout", ",", "features", ",", "regionSequence", ",", "}", ")", ")", ";", "const", "results", "=", "await", "super", ".", "render", "(", "{", "...", "renderProps", ",", "...", "res", ",", "features", ",", "layout", ",", "height", ",", "width", ",", "}", ")", ";", "return", "{", "...", "results", ",", "...", "res", ",", "features", ",", "layout", ",", "height", ",", "width", ",", "maxHeightReached", ":", "layout", ".", "maxHeightReached", ",", "}", ";", "}", "createSession", "(", "args", ")", "{", "return", "new", "PileupLayoutSession", "(", "args", ")", ";", "}", "}", "export", "type", "{", "RenderArgs", ",", "RenderArgsSerialized", ",", "RenderResults", ",", "ResultsSerialized", ",", "ResultsDeserialized", ",", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, 73, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, 115, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660141
[ "import", "{", "Region", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "{", "PrerenderedCanvas", "}", "from", "'@jbrowse/core/ui'", ";", "import", "{", "bpSpanPx", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "React", ",", "{", "MouseEvent", ",", "useRef", ",", "useState", ",", "useEffect", "}", "from", "'react'", ";", "import", "type", "{", "BaseLinearDisplayModel", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "const", "canvasPadding", "=", "100", ";", "function", "PileupRendering", "(", "props", ")", "{", "const", "{", "onMouseMove", ",", "blockKey", ",", "displayModel", ",", "width", ",", "height", ",", "regions", ",", "bpPerPx", ",", "sortedBy", ",", "colorBy", ",", "}", "=", "props", ";", "const", "{", "selectedFeatureId", ",", "featureIdUnderMouse", ",", "contextMenuFeature", "}", "=", "displayModel", ";", "const", "[", "region", "]", "=", "regions", ";", "const", "highlightOverlayCanvas", "=", "useRef", "<", "HTMLCanvasElement", ">", "(", "null", ")", ";", "const", "[", "mouseIsDown", ",", "setMouseIsDown", "]", "=", "useState", "(", "false", ")", ";", "const", "[", "movedDuringLastMouseDown", ",", "setMovedDuringLastMouseDown", "]", "=", "useState", "(", "false", ")", ";", "useEffect", "(", "(", ")", "=>", "{", "const", "canvas", "=", "highlightOverlayCanvas", ".", "current", ";", "if", "(", "!", "canvas", ")", "{", "return", ";", "}", "const", "ctx", "=", "canvas", ".", "getContext", "(", "'2d'", ")", ";", "if", "(", "!", "ctx", ")", "{", "return", ";", "}", "ctx", ".", "clearRect", "(", "0", ",", "0", ",", "canvas", ".", "width", ",", "canvas", ".", "height", ")", ";", "const", "selectedRect", "=", "selectedFeatureId", "?", "displayModel", ".", "getFeatureByID", "?.", "(", "blockKey", ",", "selectedFeatureId", ")", ":", "undefined", ";", "if", "(", "selectedRect", ")", "{", "const", "[", "leftBp", ",", "topPx", ",", "rightBp", ",", "bottomPx", "]", "=", "selectedRect", ";", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "leftBp", ",", "rightBp", ",", "region", ",", "bpPerPx", ")", ";", "const", "rectTop", "=", "Math", ".", "round", "(", "topPx", ")", ";", "const", "rectHeight", "=", "Math", ".", "round", "(", "bottomPx", "-", "topPx", ")", ";", "ctx", ".", "shadowColor", "=", "'#222266'", ";", "ctx", ".", "shadowBlur", "=", "10", ";", "ctx", ".", "lineJoin", "=", "'bevel'", ";", "ctx", ".", "lineWidth", "=", "2", ";", "ctx", ".", "strokeStyle", "=", "'#00b8ff'", ";", "ctx", ".", "strokeRect", "(", "leftPx", "-", "2", ",", "rectTop", "-", "2", ",", "rightPx", "-", "leftPx", "+", "4", ",", "rectHeight", "+", "4", ")", ";", "ctx", ".", "clearRect", "(", "leftPx", ",", "rectTop", ",", "rightPx", "-", "leftPx", ",", "rectHeight", ")", ";", "}", "const", "highlightedFeature", "=", "featureIdUnderMouse", "||", "contextMenuFeature", "?.", "id", "(", ")", ";", "const", "highlightedRect", "=", "highlightedFeature", "?", "displayModel", ".", "getFeatureByID", "?.", "(", "blockKey", ",", "highlightedFeature", ")", ":", "undefined", ";", "if", "(", "highlightedRect", ")", "{", "const", "[", "leftBp", ",", "topPx", ",", "rightBp", ",", "bottomPx", "]", "=", "highlightedRect", ";", "const", "[", "leftPx", ",", "rightPx", "]", "=", "bpSpanPx", "(", "leftBp", ",", "rightBp", ",", "region", ",", "bpPerPx", ")", ";", "const", "rectTop", "=", "Math", ".", "round", "(", "topPx", ")", ";", "const", "rectHeight", "=", "Math", ".", "round", "(", "bottomPx", "-", "topPx", ")", ";", "ctx", ".", "fillStyle", "=", "'#0003'", ";", "ctx", ".", "fillRect", "(", "leftPx", ",", "rectTop", ",", "rightPx", "-", "leftPx", ",", "rectHeight", ")", ";", "}", "}", ",", "[", "bpPerPx", ",", "region", ",", "blockKey", ",", "selectedFeatureId", ",", "displayModel", ",", "featureIdUnderMouse", ",", "contextMenuFeature", ",", "]", ")", ";", "function", "onMouseDown", "(", "event", ")", "{", "setMouseIsDown", "(", "true", ")", ";", "setMovedDuringLastMouseDown", "(", "false", ")", ";", "callMouseHandler", "(", "'MouseDown'", ",", "event", ")", ";", "}", "function", "onMouseEnter", "(", "event", ")", "{", "callMouseHandler", "(", "'MouseEnter'", ",", "event", ")", ";", "}", "function", "onMouseOut", "(", "event", ")", "{", "callMouseHandler", "(", "'MouseOut'", ",", "event", ")", ";", "callMouseHandler", "(", "'MouseLeave'", ",", "event", ")", ";", "}", "function", "onMouseOver", "(", "event", ")", "{", "callMouseHandler", "(", "'MouseOver'", ",", "event", ")", ";", "}", "function", "onMouseUp", "(", "event", ")", "{", "setMouseIsDown", "(", "false", ")", ";", "callMouseHandler", "(", "'MouseUp'", ",", "event", ")", ";", "}", "function", "onClick", "(", "event", ")", "{", "if", "(", "!", "movedDuringLastMouseDown", ")", "{", "callMouseHandler", "(", "'Click'", ",", "event", ")", ";", "}", "}", "function", "onMouseLeave", "(", "event", ")", "{", "callMouseHandler", "(", "'MouseOut'", ",", "event", ")", ";", "callMouseHandler", "(", "'MouseLeave'", ",", "event", ")", ";", "}", "function", "onContextMenu", "(", "event", ")", "{", "callMouseHandler", "(", "'ContextMenu'", ",", "event", ")", ";", "}", "function", "mouseMove", "(", "event", ")", "{", "if", "(", "mouseIsDown", ")", "{", "setMovedDuringLastMouseDown", "(", "true", ")", ";", "}", "let", "offsetX", "=", "0", ";", "let", "offsetY", "=", "0", ";", "if", "(", "highlightOverlayCanvas", ".", "current", ")", "{", "offsetX", "=", "highlightOverlayCanvas", ".", "current", ".", "getBoundingClientRect", "(", ")", ".", "left", ";", "offsetY", "=", "highlightOverlayCanvas", ".", "current", ".", "getBoundingClientRect", "(", ")", ".", "top", ";", "}", "offsetX", "=", "event", ".", "clientX", "-", "offsetX", ";", "offsetY", "=", "event", ".", "clientY", "-", "offsetY", ";", "const", "px", "=", "region", ".", "reversed", "?", "width", "-", "offsetX", ":", "offsetX", ";", "const", "clientBp", "=", "region", ".", "start", "+", "bpPerPx", "*", "px", ";", "const", "featIdUnderMouse", "=", "displayModel", ".", "getFeatureOverlapping", "(", "blockKey", ",", "clientBp", ",", "offsetY", ")", ";", "if", "(", "onMouseMove", ")", "{", "onMouseMove", "(", "event", ",", "featIdUnderMouse", ")", ";", "}", "}", "function", "callMouseHandler", "(", "handlerName", ",", "event", ")", "{", "const", "featureHandler", "=", "props", "[", "`onFeature${", "handlerName", "}`", "]", ";", "const", "canvasHandler", "=", "props", "[", "`on${", "handlerName", "}`", "]", ";", "if", "(", "featureHandler", "&&", "featureIdUnderMouse", ")", "{", "featureHandler", "(", "event", ",", "featureIdUnderMouse", ")", ";", "}", "else", "if", "(", "canvasHandler", ")", "{", "canvasHandler", "(", "event", ",", "featureIdUnderMouse", ")", ";", "}", "}", "const", "canvasWidth", "=", "Math", ".", "ceil", "(", "width", ")", ";", "return", "(", "<", "div", "className", "=", "\"PileupRendering\"", "data", "-", "testid", "=", "{", "`pileup-${", "sortedBy", "||", "colorBy", "?", "`${", "sortedBy", "?.", "type", "||", "''", "}${", "colorBy", "?.", "type", "||", "''", "}${", "colorBy", "?.", "tag", "||", "''", "}`", ":", "'normal'", "}`", "}", "style", "=", "{", "{", "position", ":", "'relative'", ",", "width", ":", "canvasWidth", ",", "height", "}", "}", ">", "<", "PrerenderedCanvas", "{", "...", "props", "}", "style", "=", "{", "{", "position", ":", "'absolute'", ",", "left", ":", "0", ",", "top", ":", "0", "}", "}", "/>", "<", "canvas", "data", "-", "testid", "=", "\"pileup_overlay_canvas\"", "width", "=", "{", "canvasWidth", "}", "height", "=", "{", "height", "+", "canvasPadding", "}", "style", "=", "{", "{", "position", ":", "'absolute'", ",", "left", ":", "0", ",", "top", ":", "0", "}", "}", "className", "=", "\"highlightOverlayCanvas\"", "ref", "=", "{", "highlightOverlayCanvas", "}", "onMouseDown", "=", "{", "event", "=>", "onMouseDown", "(", "event", ")", "}", "onMouseEnter", "=", "{", "event", "=>", "onMouseEnter", "(", "event", ")", "}", "onMouseOut", "=", "{", "event", "=>", "onMouseOut", "(", "event", ")", "}", "onMouseOver", "=", "{", "event", "=>", "onMouseOver", "(", "event", ")", "}", "onMouseUp", "=", "{", "event", "=>", "onMouseUp", "(", "event", ")", "}", "onMouseLeave", "=", "{", "event", "=>", "onMouseLeave", "(", "event", ")", "}", "onMouseMove", "=", "{", "event", "=>", "mouseMove", "(", "event", ")", "}", "onClick", "=", "{", "event", "=>", "onClick", "(", "event", ")", "}", "onContextMenu", "=", "{", "event", "=>", "onContextMenu", "(", "event", ")", "}", "onFocus", "=", "{", "(", ")", "=>", "{", "}", "}", "onBlur", "=", "{", "(", ")", "=>", "{", "}", "}", "/>", "<", "/div>);", "}", "export", "default", "observer", "(", "PileupRendering", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 9, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 139, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 115, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 2, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660142
[ "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "PileupRenderer", "from", "'./PileupRenderer'", ";", "import", "ReactComponent", "from", "'./components/PileupRendering'", ";", "import", "configSchema", "from", "'./configSchema'", ";", "export", "default", "function", "register", "(", "pluginManager", ")", "{", "pluginManager", ".", "addRendererType", "(", "(", ")", "=>", "new", "PileupRenderer", "(", "{", "name", ":", "'PileupRenderer'", ",", "ReactComponent", ",", "configSchema", ",", "pluginManager", ",", "}", ")", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660143
[ "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "baseLinearDisplayConfigSchema", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "const", "configModelFactory", "=", "(", "pluginManager", ")", "=>", "{", "const", "PileupDisplayConfigSchema", "=", "pluginManager", ".", "getDisplayType", "(", "'LinearPileupDisplay'", ")", ".", "configSchema", ";", "const", "SNPCoverageDisplayConfigSchema", "=", "pluginManager", ".", "getDisplayType", "(", "'LinearSNPCoverageDisplay'", ")", ".", "configSchema", ";", "return", "ConfigurationSchema", "(", "'LinearAlignmentsDisplay'", ",", "{", "pileupDisplay", ":", "PileupDisplayConfigSchema", ",", "snpCoverageDisplay", ":", "SNPCoverageDisplayConfigSchema", ",", "}", ",", "{", "baseConfiguration", ":", "baseLinearDisplayConfigSchema", ",", "explicitlyTyped", ":", "true", "}", ")", ";", "}", ";", "export", "type", "AlignmentsConfigModel", "=", "ReturnType", "<", "typeof", "configModelFactory", ">", ";", "export", "default", "configModelFactory", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660144
[ "import", "React", "from", "'react'", ";", "import", "{", "ConfigurationReference", ",", "getConf", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "AnyConfigurationModel", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "import", "{", "BaseDisplay", "}", "from", "'@jbrowse/core/pluggableElementTypes/models'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "MenuItem", "}", "from", "'@jbrowse/core/ui'", ";", "import", "deepEqual", "from", "'fast-deep-equal'", ";", "import", "{", "autorun", ",", "when", "}", "from", "'mobx'", ";", "import", "{", "addDisposer", ",", "getSnapshot", ",", "Instance", ",", "types", "}", "from", "'mobx-state-tree'", ";", "import", "{", "getContainingTrack", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "AlignmentsConfigModel", "}", "from", "'./configSchema'", ";", "const", "minDisplayHeight", "=", "20", ";", "const", "stateModelFactory", "=", "(", "pluginManager", ",", "configSchema", ")", "=>", "{", "return", "types", ".", "compose", "(", "'LinearAlignmentsDisplay'", ",", "BaseDisplay", ",", "types", ".", "model", "(", "{", "PileupDisplay", ":", "types", ".", "maybe", "(", "pluginManager", ".", "getDisplayType", "(", "'LinearPileupDisplay'", ")", ".", "stateModel", ")", ",", "SNPCoverageDisplay", ":", "types", ".", "maybe", "(", "pluginManager", ".", "getDisplayType", "(", "'LinearSNPCoverageDisplay'", ")", ".", "stateModel", ")", ",", "snpCovHeight", ":", "45", ",", "type", ":", "types", ".", "literal", "(", "'LinearAlignmentsDisplay'", ")", ",", "configuration", ":", "ConfigurationReference", "(", "configSchema", ")", ",", "height", ":", "250", ",", "showCoverage", ":", "true", ",", "showPileup", ":", "true", ",", "}", ")", ")", ".", "volatile", "(", "(", ")", "=>", "(", "{", "scrollTop", ":", "0", ",", "}", ")", ")", ".", "actions", "(", "self", "=>", "(", "{", "toggleCoverage", "(", ")", "{", "self", ".", "showCoverage", "=", "!", "self", ".", "showCoverage", ";", "}", ",", "togglePileup", "(", ")", "{", "self", ".", "showPileup", "=", "!", "self", ".", "showPileup", ";", "}", ",", "setScrollTop", "(", "scrollTop", ")", "{", "self", ".", "scrollTop", "=", "scrollTop", ";", "}", ",", "setSNPCoverageHeight", "(", "n", ")", "{", "self", ".", "snpCovHeight", "=", "n", ";", "}", ",", "}", ")", ")", ".", "views", "(", "self", "=>", "{", "const", "{", "trackMenuItems", ":", "superTrackMenuItems", "}", "=", "self", ";", "return", "{", "get", "pileupDisplayConfig", "(", ")", "{", "const", "conf", "=", "getConf", "(", "self", ",", "'pileupDisplay'", ")", ";", "const", "track", "=", "getContainingTrack", "(", "self", ")", ";", "return", "{", "...", "conf", ",", "type", ":", "'LinearPileupDisplay'", ",", "name", ":", "`${", "getConf", "(", "track", ",", "'name'", ")", "} pileup`", ",", "displayId", ":", "`${", "self", ".", "configuration", ".", "displayId", "}_pileup_xyz`", ",", "}", ";", "}", ",", "getFeatureByID", "(", "blockKey", ",", "id", ")", "{", "return", "self", ".", "PileupDisplay", ".", "getFeatureByID", "(", "blockKey", ",", "id", ")", ";", "}", ",", "searchFeatureByID", "(", "id", ")", "{", "return", "self", ".", "PileupDisplay", ".", "searchFeatureByID", "(", "id", ")", ";", "}", ",", "get", "features", "(", ")", "{", "return", "self", ".", "PileupDisplay", ".", "features", ";", "}", ",", "get", "DisplayBlurb", "(", ")", "{", "return", "self", ".", "PileupDisplay", "?.", "DisplayBlurb", ";", "}", ",", "get", "sortedBy", "(", ")", "{", "return", "self", ".", "PileupDisplay", ".", "sortedBy", ";", "}", ",", "get", "sortedByPosition", "(", ")", "{", "return", "self", ".", "PileupDisplay", ".", "sortedByPosition", ";", "}", ",", "get", "sortedByRefName", "(", ")", "{", "return", "self", ".", "PileupDisplay", ".", "sortedByRefName", ";", "}", ",", "get", "snpCoverageDisplayConfig", "(", ")", "{", "const", "conf", "=", "getConf", "(", "self", ",", "'snpCoverageDisplay'", ")", ";", "const", "track", "=", "getContainingTrack", "(", "self", ")", ";", "return", "{", "...", "conf", ",", "type", ":", "'LinearSNPCoverageDisplay'", ",", "name", ":", "`${", "getConf", "(", "track", ",", "'name'", ")", "} snp coverage`", ",", "displayId", ":", "`${", "self", ".", "configuration", ".", "displayId", "}_snpcoverage_xyz`", ",", "}", ";", "}", ",", "trackMenuItems", "(", ")", "{", "return", "[", "...", "superTrackMenuItems", "(", ")", ",", "{", "type", ":", "'subMenu'", ",", "label", ":", "'Pileup settings'", ",", "subMenu", ":", "self", ".", "PileupDisplay", ".", "trackMenuItems", "(", ")", ",", "}", ",", "{", "type", ":", "'subMenu'", ",", "label", ":", "'SNPCoverage settings'", ",", "subMenu", ":", "self", ".", "SNPCoverageDisplay", ".", "trackMenuItems", "(", ")", ",", "}", ",", "]", ";", "}", ",", "}", ";", "}", ")", ".", "actions", "(", "self", "=>", "(", "{", "setSNPCoverageDisplay", "(", "displayConfig", ")", "{", "self", ".", "SNPCoverageDisplay", "=", "{", "type", ":", "'LinearSNPCoverageDisplay'", ",", "configuration", ":", "displayConfig", ",", "height", ":", "self", ".", "snpCovHeight", ",", "}", ";", "}", ",", "setUserBpPerPxLimit", "(", "limit", ")", "{", "self", ".", "PileupDisplay", ".", "setUserBpPerPxLimit", "(", "limit", ")", ";", "self", ".", "SNPCoverageDisplay", ".", "setUserBpPerPxLimit", "(", "limit", ")", ";", "}", ",", "setPileupDisplay", "(", "displayConfig", ")", "{", "self", ".", "PileupDisplay", "=", "{", "type", ":", "'LinearPileupDisplay'", ",", "configuration", ":", "displayConfig", ",", "}", ";", "}", ",", "setHeight", "(", "displayHeight", ")", "{", "if", "(", "displayHeight", ">", "minDisplayHeight", ")", "{", "self", ".", "height", "=", "displayHeight", ";", "}", "else", "{", "self", ".", "height", "=", "minDisplayHeight", ";", "}", "return", "self", ".", "height", ";", "}", ",", "resizeHeight", "(", "distance", ")", "{", "const", "oldHeight", "=", "self", ".", "height", ";", "const", "newHeight", "=", "this", ".", "setHeight", "(", "self", ".", "height", "+", "distance", ")", ";", "return", "newHeight", "-", "oldHeight", ";", "}", ",", "}", ")", ")", ".", "actions", "(", "self", "=>", "(", "{", "afterAttach", "(", ")", "{", "addDisposer", "(", "self", ",", "autorun", "(", "(", ")", "=>", "{", "if", "(", "!", "self", ".", "SNPCoverageDisplay", ")", "{", "self", ".", "setSNPCoverageDisplay", "(", "self", ".", "snpCoverageDisplayConfig", ")", ";", "}", "else", "if", "(", "!", "deepEqual", "(", "self", ".", "snpCoverageDisplayConfig", ",", "getSnapshot", "(", "self", ".", "SNPCoverageDisplay", ".", "configuration", ")", ")", ")", "{", "self", ".", "SNPCoverageDisplay", ".", "setHeight", "(", "self", ".", "snpCovHeight", ")", ";", "self", ".", "SNPCoverageDisplay", ".", "setConfig", "(", "self", ".", "snpCoverageDisplayConfig", ")", ";", "}", "if", "(", "!", "self", ".", "PileupDisplay", ")", "{", "self", ".", "setPileupDisplay", "(", "self", ".", "pileupDisplayConfig", ")", ";", "}", "else", "if", "(", "!", "deepEqual", "(", "self", ".", "pileupDisplayConfig", ",", "getSnapshot", "(", "self", ".", "PileupDisplay", ".", "configuration", ")", ")", ")", "{", "self", ".", "PileupDisplay", ".", "setConfig", "(", "self", ".", "pileupDisplayConfig", ")", ";", "}", "if", "(", "self", ".", "PileupDisplay", ".", "filterBy", "&&", "!", "deepEqual", "(", "getSnapshot", "(", "self", ".", "PileupDisplay", ".", "filterBy", ")", ",", "getSnapshot", "(", "self", ".", "SNPCoverageDisplay", ".", "filterBy", ")", ")", ")", "{", "self", ".", "SNPCoverageDisplay", ".", "setFilterBy", "(", "getSnapshot", "(", "self", ".", "PileupDisplay", ".", "filterBy", ")", ")", ";", "}", "if", "(", "self", ".", "PileupDisplay", ".", "colorBy", "&&", "!", "deepEqual", "(", "getSnapshot", "(", "self", ".", "PileupDisplay", ".", "colorBy", ")", ",", "self", ".", "SNPCoverageDisplay", ".", "colorBy", "?", "getSnapshot", "(", "self", ".", "SNPCoverageDisplay", ".", "colorBy", ")", ":", "{", "}", ")", ")", "{", "self", ".", "SNPCoverageDisplay", ".", "setColorBy", "(", "getSnapshot", "(", "self", ".", "PileupDisplay", ".", "colorBy", ")", ")", ";", "}", "}", ")", ")", ";", "addDisposer", "(", "self", ",", "autorun", "(", "(", ")", "=>", "{", "self", ".", "setSNPCoverageHeight", "(", "self", ".", "SNPCoverageDisplay", ".", "height", ")", ";", "}", ")", ")", ";", "}", ",", "async", "renderSvg", "(", "opts", ")", "{", "const", "pileupHeight", "=", "self", ".", "height", "-", "self", ".", "SNPCoverageDisplay", ".", "height", ";", "await", "when", "(", "(", ")", "=>", "self", ".", "PileupDisplay", ".", "ready", ")", ";", "return", "(", "<", ">", "<", "g", ">", "{", "await", "self", ".", "SNPCoverageDisplay", ".", "renderSvg", "(", "opts", ")", "}", "<", "/g>", "<", "g", "transform", "=", "{", "`translate(0 ${", "self", ".", "SNPCoverageDisplay", ".", "height", "})`", "}", ">", "{", "await", "self", ".", "PileupDisplay", ".", "renderSvg", "(", "{", "...", "opts", ",", "overrideHeight", ":", "pileupHeight", ",", "}", ")", "}", "<", "/g>", "<", "/>);", "}", ",", "}", ")", ")", ";", "}", ";", "export", "default", "stateModelFactory", ";", "export", "type", "AlignmentsDisplayStateModel", "=", "ReturnType", "<", "typeof", "stateModelFactory", ">", ";", "export", "type", "AlignmentsDisplayModel", "=", "Instance", "<", "AlignmentsDisplayStateModel", ">", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, 731, null, null, 3083, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 9615, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 9615, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, 3, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 6, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660145
[ "import", "React", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "getConf", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "ResizeHandle", "}", "from", "'@jbrowse/core/ui'", ";", "import", "{", "AlignmentsDisplayModel", "}", "from", "'../models/model'", ";", "function", "AlignmentsDisplay", "(", "{", "model", "}", ")", "{", "const", "{", "PileupDisplay", ",", "SNPCoverageDisplay", ",", "showPileup", ",", "showCoverage", "}", "=", "model", ";", "return", "(", "<", "div", "data", "-", "testid", "=", "{", "`display-${", "getConf", "(", "model", ",", "'displayId'", ")", "}`", "}", "style", "=", "{", "{", "position", ":", "'relative'", "}", "}", ">", "<", "div", "data", "-", "testid", "=", "\"Blockset-snpcoverage\"", ">", "{", "showCoverage", "?", "(", "<", "SNPCoverageDisplay", ".", "RenderingComponent", "model", "=", "{", "SNPCoverageDisplay", "}", "/", ">", ")", ":", "null", "}", "<", "/div>", "<", "ResizeHandle", "onDrag", "=", "{", "delta", "=>", "{", "if", "(", "SNPCoverageDisplay", ")", "{", "SNPCoverageDisplay", ".", "setHeight", "(", "SNPCoverageDisplay", ".", "height", "+", "delta", ")", ";", "return", "delta", ";", "}", "return", "0", ";", "}", "}", "style", "=", "{", "{", "position", ":", "'absolute'", ",", "top", ":", "showCoverage", "?", "SNPCoverageDisplay", ".", "height", "+", "2", ":", "0", ",", "height", ":", "3", ",", "}", "}", "/>", "<", "div", "data", "-", "testid", "=", "\"Blockset-pileup\"", "style", "=", "{", "{", "position", ":", "'absolute'", ",", "top", ":", "showCoverage", "?", "SNPCoverageDisplay", ".", "height", "+", "5", ":", "0", ",", "height", ":", "3", ",", "}", "}", ">", "{", "showPileup", "?", "(", "<", "PileupDisplay", ".", "RenderingComponent", "model", "=", "{", "PileupDisplay", "}", "/", ">", ")", ":", "null", "}", "<", "/div>", "<", "/div>);", "}", "export", "default", "observer", "(", "AlignmentsDisplay", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660146
[ "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "baseLinearDisplayConfigSchema", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "import", "{", "types", "}", "from", "'mobx-state-tree'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "export", "default", "function", "SNPCoverageConfigFactory", "(", "pluginManager", ")", "{", "const", "SNPCoverageRendererConfigSchema", "=", "pluginManager", ".", "getRendererType", "(", "'SNPCoverageRenderer'", ")", ".", "configSchema", ";", "return", "ConfigurationSchema", "(", "'LinearSNPCoverageDisplay'", ",", "{", "autoscale", ":", "{", "type", ":", "'stringEnum'", ",", "defaultValue", ":", "'local'", ",", "model", ":", "types", ".", "enumeration", "(", "'Autoscale type'", ",", "[", "'local'", "]", ")", ",", "description", ":", "'performs local autoscaling (no other options for SNP Coverage available)'", ",", "}", ",", "minScore", ":", "{", "type", ":", "'number'", ",", "defaultValue", ":", "Number", ".", "MIN_VALUE", ",", "description", ":", "'minimum value for the y-scale'", ",", "}", ",", "maxScore", ":", "{", "type", ":", "'number'", ",", "description", ":", "'maximum value for the y-scale'", ",", "defaultValue", ":", "Number", ".", "MAX_VALUE", ",", "}", ",", "scaleType", ":", "{", "type", ":", "'stringEnum'", ",", "model", ":", "types", ".", "enumeration", "(", "'Scale type'", ",", "[", "'linear'", ",", "'log'", "]", ")", ",", "description", ":", "'The type of scale to use'", ",", "defaultValue", ":", "'linear'", ",", "}", ",", "inverted", ":", "{", "type", ":", "'boolean'", ",", "description", ":", "'draw upside down'", ",", "defaultValue", ":", "false", ",", "}", ",", "maxDisplayedBpPerPx", ":", "{", "type", ":", "'number'", ",", "description", ":", "'maximum bpPerPx that is displayed in the view'", ",", "defaultValue", ":", "100", ",", "}", ",", "headroom", ":", "{", "type", ":", "'number'", ",", "description", ":", "'round the upper value of the domain scale to the nearest N'", ",", "defaultValue", ":", "0", ",", "}", ",", "renderers", ":", "ConfigurationSchema", "(", "'RenderersConfiguration'", ",", "{", "SNPCoverageRenderer", ":", "SNPCoverageRendererConfigSchema", ",", "}", ")", ",", "}", ",", "{", "baseConfiguration", ":", "baseLinearDisplayConfigSchema", ",", "explicitlyTyped", ":", "true", "}", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660147
[ "import", "React", "from", "'react'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "Feature", "}", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "Tooltip", "}", "from", "'@jbrowse/plugin-wiggle'", ";", "type", "Count", "=", "{", "[", "key", "]", ":", "{", "total", ":", "number", ";", "strands", ":", "{", "[", "key", "]", ":", "number", ";", "}", ";", "}", ";", "}", ";", "type", "SNPInfo", "=", "{", "ref", ":", "Count", ";", "cov", ":", "Count", ";", "lowqual", ":", "Count", ";", "noncov", ":", "Count", ";", "delskips", ":", "Count", ";", "total", ":", "number", ";", "}", ";", "const", "en", "=", "(", "n", ")", "=>", "n", ".", "toLocaleString", "(", "'en-US'", ")", ";", "const", "TooltipContents", "=", "React", ".", "forwardRef", "(", "(", "{", "feature", "}", ",", "ref", ")", "=>", "{", "const", "start", "=", "feature", ".", "get", "(", "'start'", ")", ";", "const", "end", "=", "feature", ".", "get", "(", "'end'", ")", ";", "const", "name", "=", "feature", ".", "get", "(", "'refName'", ")", ";", "const", "loc", "=", "[", "name", ",", "start", "===", "end", "?", "en", "(", "start", ")", ":", "`${", "en", "(", "start", ")", "}..${", "en", "(", "end", ")", "}`", "]", ".", "filter", "(", "f", "=>", "!", "!", "f", ")", ".", "join", "(", "':'", ")", ";", "const", "info", "=", "feature", ".", "get", "(", "'snpinfo'", ")", "as", "SNPInfo", ";", "const", "total", "=", "info", "?.", "total", ";", "return", "(", "<", "div", "ref", "=", "{", "ref", "}", ">", "<", "table", ">", "<", "caption", ">", "{", "loc", "}", "<", "/caption>", "<", "thead", ">", "<", "tr", ">", "<", "th", ">", "Base", "<", "/th>", "<", "th", ">", "Count", "<", "/th>", "<", "th", ">", "%", "of", "Total", "<", "/th>", "<", "th", ">", "Strands", "<", "/th>", "<", "th", ">", "Source", "<", "/th>", "<", "/tr>", "<", "/thead>", "<", "tbody", ">", "<", "tr", ">", "<", "td", ">", "Total", "<", "/td>", "<", "td", ">", "{", "total", "}", "<", "/td>", "<", "td", "/", ">", "<", "/tr>", "{", "Object", ".", "entries", "(", "info", ")", ".", "map", "(", "(", "[", "key", ",", "entry", "]", ")", "=>", "{", "return", "Object", ".", "entries", "(", "entry", ")", ".", "map", "(", "(", "[", "base", ",", "score", "]", ")", "=>", "{", "const", "{", "strands", "}", "=", "score", ";", "return", "(", "<", "tr", "key", "=", "{", "base", "}", ">", "<", "td", ">", "{", "base", ".", "toUpperCase", "(", ")", "}", "<", "/td>", "<", "td", ">", "{", "score", ".", "total", "}", "<", "/td>", "<", "td", ">", "{", "base", "===", "'total'", "||", "base", "===", "'skip'", "?", "'---'", ":", "`${", "Math", ".", "floor", "(", "(", "score", ".", "total", "/", "total", ")", "*", "100", ")", "}%`", "}", "<", "/td>", "<", "td", ">", "{", "strands", "[", "'-1'", "]", "?", "`${", "strands", "[", "'-1'", "]", "}(-)`", ":", "''", "}", "{", "strands", "[", "'1'", "]", "?", "`${", "strands", "[", "'1'", "]", "}(+)`", ":", "''", "}", "<", "/td>", "<", "td", ">", "{", "key", "}", "<", "/td>", "<", "/tr>);", "}", ")", ";", "}", ")", "}", "<", "/tbody>", "<", "/table>", "<", "/div>);", "}", ")", ";", "type", "Coord", "=", "[", "number", ",", "number", "]", ";", "const", "SNPCoverageTooltip", "=", "observer", "(", "(", "props", ")", "=>", "{", "const", "{", "model", "}", "=", "props", ";", "const", "{", "featureUnderMouse", ":", "feat", "}", "=", "model", ";", "return", "feat", "&&", "feat", ".", "get", "(", "'type'", ")", "===", "'skip'", "?", "null", ":", "(", "<", "Tooltip", "TooltipContents", "=", "{", "TooltipContents", "}", "{", "...", "props", "}", "/>);", "}", ")", ";", "export", "default", "SNPCoverageTooltip", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, 3, null, null, null, null, null, null, null, null, null, null, 128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660148
[ "import", "{", "addDisposer", ",", "types", ",", "cast", ",", "getEnv", ",", "getSnapshot", "}", "from", "'mobx-state-tree'", ";", "import", "{", "observable", ",", "autorun", "}", "from", "'mobx'", ";", "import", "{", "getConf", ",", "readConfObject", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "linearWiggleDisplayModelFactory", "}", "from", "'@jbrowse/plugin-wiggle'", ";", "import", "{", "AnyConfigurationSchemaType", ",", "AnyConfigurationModel", ",", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "SerializableFilterChain", "from", "'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'", ";", "import", "{", "getContainingView", "}", "from", "'@jbrowse/core/util'", ";", "import", "Tooltip", "from", "'../components/Tooltip'", ";", "import", "{", "getUniqueModificationValues", "}", "from", "'../../shared'", ";", "import", "{", "LinearGenomeViewModel", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "const", "rendererTypes", "=", "new", "Map", "(", "[", "[", "'snpcoverage'", ",", "'SNPCoverageRenderer'", "]", "]", ")", ";", "type", "LGV", "=", "LinearGenomeViewModel", ";", "const", "stateModelFactory", "=", "(", "pluginManager", ",", "configSchema", ")", "=>", "types", ".", "compose", "(", "'LinearSNPCoverageDisplay'", ",", "linearWiggleDisplayModelFactory", "(", "pluginManager", ",", "configSchema", ")", ",", "types", ".", "model", "(", "{", "type", ":", "types", ".", "literal", "(", "'LinearSNPCoverageDisplay'", ")", ",", "drawInterbaseCounts", ":", "types", ".", "maybe", "(", "types", ".", "boolean", ")", ",", "drawIndicators", ":", "types", ".", "maybe", "(", "types", ".", "boolean", ")", ",", "drawArcs", ":", "types", ".", "maybe", "(", "types", ".", "boolean", ")", ",", "filterBy", ":", "types", ".", "optional", "(", "types", ".", "model", "(", "{", "flagInclude", ":", "types", ".", "optional", "(", "types", ".", "number", ",", "0", ")", ",", "flagExclude", ":", "types", ".", "optional", "(", "types", ".", "number", ",", "1540", ")", ",", "readName", ":", "types", ".", "maybe", "(", "types", ".", "string", ")", ",", "tagFilter", ":", "types", ".", "maybe", "(", "types", ".", "model", "(", "{", "tag", ":", "types", ".", "string", ",", "value", ":", "types", ".", "string", "}", ")", ")", ",", "}", ")", ",", "{", "}", ")", ",", "colorBy", ":", "types", ".", "maybe", "(", "types", ".", "model", "(", "{", "type", ":", "types", ".", "string", ",", "tag", ":", "types", ".", "maybe", "(", "types", ".", "string", ")", ",", "}", ")", ")", ",", "}", ")", ")", ".", "volatile", "(", "(", ")", "=>", "(", "{", "modificationTagMap", ":", "observable", ".", "map", "(", "{", "}", ")", ",", "}", ")", ")", ".", "actions", "(", "self", "=>", "(", "{", "setConfig", "(", "configuration", ")", "{", "self", ".", "configuration", "=", "configuration", ";", "}", ",", "setFilterBy", "(", "filter", ")", "{", "self", ".", "filterBy", "=", "cast", "(", "filter", ")", ";", "}", ",", "setColorBy", "(", "colorBy", "?", ")", "{", "self", ".", "colorBy", "=", "cast", "(", "colorBy", ")", ";", "}", ",", "updateModificationColorMap", "(", "uniqueModifications", ")", "{", "const", "colorPalette", "=", "[", "'red'", ",", "'blue'", ",", "'green'", ",", "'orange'", ",", "'purple'", "]", ";", "let", "i", "=", "0", ";", "uniqueModifications", ".", "forEach", "(", "value", "=>", "{", "if", "(", "!", "self", ".", "modificationTagMap", ".", "has", "(", "value", ")", ")", "{", "const", "newColor", "=", "colorPalette", "[", "i", "++", "]", ";", "self", ".", "modificationTagMap", ".", "set", "(", "value", ",", "newColor", ")", ";", "}", "}", ")", ";", "}", ",", "}", ")", ")", ".", "views", "(", "self", "=>", "{", "const", "{", "renderProps", ":", "superRenderProps", "}", "=", "self", ";", "return", "{", "get", "rendererConfig", "(", ")", "{", "const", "configBlob", "=", "getConf", "(", "self", ",", "[", "'renderers'", ",", "self", ".", "rendererTypeName", "]", ")", "||", "{", "}", ";", "return", "self", ".", "rendererType", ".", "configSchema", ".", "create", "(", "{", "...", "configBlob", ",", "drawInterbaseCounts", ":", "self", ".", "drawInterbaseCounts", "===", "undefined", "?", "configBlob", ".", "drawInterbaseCounts", ":", "self", ".", "drawInterbaseCounts", ",", "drawIndicators", ":", "self", ".", "drawIndicators", "===", "undefined", "?", "configBlob", ".", "drawIndicators", ":", "self", ".", "drawIndicators", ",", "drawArcs", ":", "self", ".", "drawArcs", "===", "undefined", "?", "configBlob", ".", "drawArcs", ":", "self", ".", "drawArcs", ",", "}", ",", "getEnv", "(", "self", ")", ")", ";", "}", ",", "get", "drawArcsSetting", "(", ")", "{", "return", "self", ".", "drawArcs", "!==", "undefined", "?", "self", ".", "drawArcs", ":", "readConfObject", "(", "this", ".", "rendererConfig", ",", "'drawArcs'", ")", ";", "}", ",", "get", "drawInterbaseCountsSetting", "(", ")", "{", "return", "self", ".", "drawInterbaseCounts", "!==", "undefined", "?", "self", ".", "drawInterbaseCounts", ":", "readConfObject", "(", "this", ".", "rendererConfig", ",", "'drawInterbaseCounts'", ")", ";", "}", ",", "get", "drawIndicatorsSetting", "(", ")", "{", "return", "self", ".", "drawIndicators", "!==", "undefined", "?", "self", ".", "drawIndicators", ":", "readConfObject", "(", "this", ".", "rendererConfig", ",", "'drawIndicators'", ")", ";", "}", ",", "get", "modificationsReady", "(", ")", "{", "return", "self", ".", "colorBy", "?.", "type", "===", "'modifications'", "?", "Object", ".", "keys", "(", "JSON", ".", "parse", "(", "JSON", ".", "stringify", "(", "self", ".", "modificationTagMap", ")", ")", ")", ".", "length", ">", "0", ":", "true", ";", "}", ",", "renderProps", "(", ")", "{", "return", "{", "...", "superRenderProps", "(", ")", ",", "notReady", ":", "!", "self", ".", "ready", "||", "!", "this", ".", "modificationsReady", ",", "filters", ":", "self", ".", "filters", ",", "modificationTagMap", ":", "JSON", ".", "parse", "(", "JSON", ".", "stringify", "(", "self", ".", "modificationTagMap", ")", ")", ",", "colorBy", ":", "self", ".", "colorBy", "?", "getSnapshot", "(", "self", ".", "colorBy", ")", ":", "undefined", ",", "}", ";", "}", ",", "}", ";", "}", ")", ".", "actions", "(", "self", "=>", "(", "{", "toggleDrawIndicators", "(", ")", "{", "self", ".", "drawIndicators", "=", "!", "self", ".", "drawIndicatorsSetting", ";", "}", ",", "toggleDrawInterbaseCounts", "(", ")", "{", "self", ".", "drawInterbaseCounts", "=", "!", "self", ".", "drawInterbaseCountsSetting", ";", "}", ",", "toggleDrawArcs", "(", ")", "{", "self", ".", "drawArcs", "=", "!", "self", ".", "drawArcsSetting", ";", "}", ",", "afterAttach", "(", ")", "{", "addDisposer", "(", "self", ",", "autorun", "(", "async", "(", ")", "=>", "{", "try", "{", "const", "{", "colorBy", "}", "=", "self", ";", "const", "{", "staticBlocks", "}", "=", "getContainingView", "(", "self", ")", "as", "LGV", ";", "if", "(", "colorBy", "?.", "type", "===", "'modifications'", ")", "{", "const", "vals", "=", "await", "getUniqueModificationValues", "(", "self", ",", "getConf", "(", "self", ".", "parentTrack", ",", "'adapter'", ")", ",", "colorBy", ",", "staticBlocks", ")", ";", "self", ".", "updateModificationColorMap", "(", "vals", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "error", ")", ";", "self", ".", "setError", "(", "error", ")", ";", "}", "}", ",", "{", "delay", ":", "1000", "}", ")", ")", ";", "}", ",", "}", ")", ")", ".", "views", "(", "self", "=>", "{", "const", "{", "trackMenuItems", ":", "superTrackMenuItems", "}", "=", "self", ";", "return", "{", "get", "TooltipComponent", "(", ")", "{", "return", "Tooltip", ";", "}", ",", "get", "adapterConfig", "(", ")", "{", "const", "subadapter", "=", "getConf", "(", "self", ".", "parentTrack", ",", "'adapter'", ")", ";", "return", "{", "type", ":", "'SNPCoverageAdapter'", ",", "subadapter", ",", "}", ";", "}", ",", "get", "rendererTypeName", "(", ")", "{", "return", "rendererTypes", ".", "get", "(", "'snpcoverage'", ")", ";", "}", ",", "get", "needsScalebar", "(", ")", "{", "return", "true", ";", "}", ",", "contextMenuItems", "(", ")", "{", "return", "[", "]", ";", "}", ",", "trackMenuItems", "(", ")", "{", "return", "[", "...", "superTrackMenuItems", "(", ")", ",", "{", "label", ":", "'Draw insertion/clipping indicators'", ",", "type", ":", "'checkbox'", ",", "checked", ":", "self", ".", "drawIndicatorsSetting", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "toggleDrawIndicators", "(", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Draw insertion/clipping counts'", ",", "type", ":", "'checkbox'", ",", "checked", ":", "self", ".", "drawInterbaseCountsSetting", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "toggleDrawInterbaseCounts", "(", ")", ";", "}", ",", "}", ",", "{", "label", ":", "'Draw arcs'", ",", "type", ":", "'checkbox'", ",", "checked", ":", "self", ".", "drawArcsSetting", ",", "onClick", ":", "(", ")", "=>", "{", "self", ".", "toggleDrawArcs", "(", ")", ";", "}", ",", "}", ",", "]", ";", "}", ",", "get", "filters", "(", ")", "{", "let", "filters", "=", "[", "]", ";", "if", "(", "self", ".", "filterBy", ")", "{", "const", "{", "flagInclude", ",", "flagExclude", ",", "tagFilter", ",", "readName", "}", "=", "self", ".", "filterBy", ";", "filters", "=", "[", "`jexl:get(feature,'snpinfo') != undefined ? true : `", "+", "`((get(feature,'flags')&${", "flagInclude", "})==${", "flagInclude", "}) && `", "+", "`!((get(feature,'flags')&${", "flagExclude", "}))`", ",", "]", ";", "if", "(", "tagFilter", ")", "{", "const", "{", "tag", ",", "value", "}", "=", "tagFilter", ";", "filters", ".", "push", "(", "`jexl:get(feature,'snpinfo') != undefined ? true : `", "+", "`\"${", "value", "}\" =='*' ? getTag(feature,\"${", "tag", "}\") != undefined : `", "+", "`getTag(feature,\"${", "tag", "}\") == \"${", "value", "}\"`", ")", ";", "}", "if", "(", "readName", ")", "{", "filters", ".", "push", "(", "`jexl:get(feature,'snpinfo') != undefined ? true : `", "+", "`get(feature,'name') == \"${", "readName", "}\"`", ")", ";", "}", "}", "return", "new", "SerializableFilterChain", "(", "{", "filters", "}", ")", ";", "}", ",", "}", ";", "}", ")", ";", "export", "type", "SNPCoverageDisplayModel", "=", "ReturnType", "<", "typeof", "stateModelFactory", ">", ";", "export", "default", "stateModelFactory", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 19, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 731, null, null, 3083, null, 46567, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 9615, null, null, null, null, null, null, null, null, null, null, 4, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 5, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660149
[ "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "configSchemaFactory", "from", "'./models/configSchema'", ";", "import", "modelFactory", "from", "'./models/model'", ";", "import", "{", "LinearWiggleDisplayReactComponent", "}", "from", "'@jbrowse/plugin-wiggle'", ";", "import", "DisplayType", "from", "'@jbrowse/core/pluggableElementTypes/DisplayType'", ";", "export", "default", "function", "register", "(", "pluginManager", ")", "{", "pluginManager", ".", "addDisplayType", "(", "(", ")", "=>", "{", "const", "configSchema", "=", "configSchemaFactory", "(", "pluginManager", ")", ";", "return", "new", "DisplayType", "(", "{", "name", ":", "'LinearSNPCoverageDisplay'", ",", "configSchema", ",", "stateModel", ":", "modelFactory", "(", "pluginManager", ",", "configSchema", ")", ",", "trackType", ":", "'AlignmentsTrack'", ",", "viewType", ":", "'LinearGenomeView'", ",", "ReactComponent", ":", "LinearWiggleDisplayReactComponent", ",", "}", ")", ";", "}", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660150
[ "import", "configSchemaFactory", "from", "'./configSchema'", ";", "import", "modelFactory", "from", "'./model'", ";", "import", "DisplayType", "from", "'@jbrowse/core/pluggableElementTypes/DisplayType'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "BaseLinearDisplayComponent", "}", "from", "'@jbrowse/plugin-linear-genome-view'", ";", "export", "default", "function", "register", "(", "pluginManager", ")", "{", "pluginManager", ".", "addDisplayType", "(", "(", ")", "=>", "{", "const", "configSchema", "=", "configSchemaFactory", "(", "pluginManager", ")", ";", "return", "new", "DisplayType", "(", "{", "name", ":", "'LinearPileupDisplay'", ",", "configSchema", ",", "stateModel", ":", "modelFactory", "(", "configSchema", ")", ",", "trackType", ":", "'AlignmentsTrack'", ",", "viewType", ":", "'LinearGenomeView'", ",", "ReactComponent", ":", "BaseLinearDisplayComponent", ",", "}", ")", ";", "}", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660151
[ "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "TrackType", "from", "'@jbrowse/core/pluggableElementTypes/TrackType'", ";", "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "createBaseTrackConfig", ",", "createBaseTrackModel", ",", "}", "from", "'@jbrowse/core/pluggableElementTypes/models'", ";", "function", "configSchemaFactory", "(", "pluginManager", ")", "{", "return", "ConfigurationSchema", "(", "'AlignmentsTrack'", ",", "{", "}", ",", "{", "baseConfiguration", ":", "createBaseTrackConfig", "(", "pluginManager", ")", "}", ")", ";", "}", "export", "default", "function", "register", "(", "pluginManager", ")", "{", "pluginManager", ".", "addTrackType", "(", "(", ")", "=>", "{", "const", "configSchema", "=", "configSchemaFactory", "(", "pluginManager", ")", ";", "const", "track", "=", "new", "TrackType", "(", "{", "name", ":", "'AlignmentsTrack'", ",", "configSchema", ",", "stateModel", ":", "createBaseTrackModel", "(", "pluginManager", ",", "'AlignmentsTrack'", ",", "configSchema", ")", ",", "}", ")", ";", "const", "linearAlignmentsDisplay", "=", "pluginManager", ".", "getDisplayType", "(", "'LinearAlignmentsDisplay'", ")", ";", "track", ".", "addDisplayType", "(", "linearAlignmentsDisplay", ")", ";", "return", "track", ";", "}", ")", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660152
[ "import", "React", ",", "{", "useState", "}", "from", "'react'", ";", "import", "{", "Typography", ",", "Link", ",", "Paper", ",", "Checkbox", ",", "FormControlLabel", ",", "FormGroup", ",", "makeStyles", ",", "}", "from", "'@material-ui/core'", ";", "import", "{", "observer", "}", "from", "'mobx-react'", ";", "import", "{", "getSession", "}", "from", "'@jbrowse/core/util'", ";", "import", "copy", "from", "'copy-to-clipboard'", ";", "import", "{", "FeatureDetails", ",", "BaseCard", ",", "SimpleValue", ",", "}", "from", "'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail'", ";", "import", "{", "parseCigar", "}", "from", "'../BamAdapter/MismatchParser'", ";", "const", "useStyles", "=", "makeStyles", "(", "(", ")", "=>", "(", "{", "compact", ":", "{", "paddingRight", ":", "0", ",", "paddingTop", ":", "0", ",", "paddingBottom", ":", "0", ",", "}", ",", "}", ")", ")", ";", "const", "omit", "=", "[", "'clipPos'", ",", "'flags'", "]", ";", "function", "AlignmentFlags", "(", "props", ")", "{", "const", "classes", "=", "useStyles", "(", ")", ";", "const", "{", "feature", "}", "=", "props", ";", "const", "{", "flags", "}", "=", "feature", ";", "const", "flagNames", "=", "[", "'read paired'", ",", "'read mapped in proper pair'", ",", "'read unmapped'", ",", "'mate unmapped'", ",", "'read reverse strand'", ",", "'mate reverse strand'", ",", "'first in pair'", ",", "'second in pair'", ",", "'not primary alignment'", ",", "'read fails platform/vendor quality checks'", ",", "'read is PCR or optical duplicate'", ",", "'supplementary alignment'", ",", "]", ";", "return", "(", "<", "BaseCard", "{", "...", "props", "}", "title", "=", "\"Flags\"", ">", "<", "SimpleValue", "name", "=", "{", "'Flag'", "}", "value", "=", "{", "flags", "}", "/", ">", "<", "FormGroup", ">", "{", "flagNames", ".", "map", "(", "(", "name", ",", "index", ")", "=>", "{", "const", "val", "=", "flags", "&", "(", "1", "<<", "index", ")", ";", "const", "key", "=", "`${", "name", "}_${", "val", "}`", ";", "return", "(", "<", "FormControlLabel", "key", "=", "{", "key", "}", "control", "=", "{", "<", "Checkbox", "className", "=", "{", "classes", ".", "compact", "}", "checked", "=", "{", "Boolean", "(", "val", ")", "}", "name", "=", "{", "name", "}", "readOnly", "/", ">", "}", "label", "=", "{", "name", "}", "/", ">", ")", ";", "}", ")", "}", "<", "/FormGroup>", "<", "/BaseCard>);", "}", "function", "Formatter", "(", "{", "value", "}", ")", "{", "const", "[", "show", ",", "setShow", "]", "=", "useState", "(", "false", ")", ";", "const", "display", "=", "String", "(", "value", ")", ";", "if", "(", "display", ".", "length", ">", "100", ")", "{", "return", "(", "<", ">", "<", "button", "type", "=", "\"button\"", "onClick", "=", "{", "(", ")", "=>", "copy", "(", "display", ")", "}", ">", "Copy", "<", "/button>", "<", "button", "type", "=", "\"button\"", "onClick", "=", "{", "(", ")", "=>", "setShow", "(", "val", "=>", "!", "val", ")", "}", ">", "{", "show", "?", "'Show less'", ":", "'Show more'", "}", "<", "/button>", "<", "div", ">", "{", "show", "?", "display", ":", "`${", "display", ".", "slice", "(", "0", ",", "100", ")", "}...`", "}", "<", "/div>", "<", "/>);", "}", "return", "<", "div", ">", "{", "display", "}", "<", "/div>;", "}", "function", "getLengthOnRef", "(", "cigar", ")", "{", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "let", "lengthOnRef", "=", "0", ";", "for", "(", "let", "i", "=", "0", ";", "i", "<", "cigarOps", ".", "length", ";", "i", "+=", "2", ")", "{", "const", "len", "=", "+", "cigarOps", "[", "i", "]", ";", "const", "op", "=", "cigarOps", "[", "i", "+", "1", "]", ";", "if", "(", "op", "!==", "'H'", "&&", "op", "!==", "'S'", "&&", "op", "!==", "'I'", ")", "{", "lengthOnRef", "+=", "len", ";", "}", "}", "return", "lengthOnRef", ";", "}", "function", "SupplementaryAlignments", "(", "props", ")", "{", "const", "{", "tag", ",", "model", "}", "=", "props", ";", "const", "session", "=", "getSession", "(", "model", ")", ";", "return", "(", "<", "BaseCard", "{", "...", "props", "}", "title", "=", "\"Supplementary alignments\"", ">", "<", "Typography", ">", "List", "of", "supplementary", "alignment", "locations", "<", "/Typography>", "<", "ul", ">", "{", "tag", ".", "split", "(", "';'", ")", ".", "filter", "(", "SA", "=>", "!", "!", "SA", ")", ".", "map", "(", "(", "SA", ",", "index", ")", "=>", "{", "const", "[", "saRef", ",", "saStart", ",", "saStrand", ",", "saCigar", "]", "=", "SA", ".", "split", "(", "','", ")", ";", "const", "saLength", "=", "getLengthOnRef", "(", "saCigar", ")", ";", "const", "extra", "=", "Math", ".", "floor", "(", "saLength", "/", "5", ")", ";", "const", "start", "=", "+", "saStart", ";", "const", "end", "=", "+", "saStart", "+", "saLength", ";", "const", "locString", "=", "`${", "saRef", "}:${", "Math", ".", "max", "(", "1", ",", "start", "-", "extra", ")", "}-${", "end", "+", "extra", "}`", ";", "const", "displayStart", "=", "start", ".", "toLocaleString", "(", "'en-US'", ")", ";", "const", "displayEnd", "=", "end", ".", "toLocaleString", "(", "'en-US'", ")", ";", "const", "displayString", "=", "`${", "saRef", "}:${", "displayStart", "}-${", "displayEnd", "} (${", "saStrand", "})`", ";", "return", "(", "<", "li", "key", "=", "{", "`${", "locString", "}-${", "index", "}`", "}", ">", "<", "Link", "onClick", "=", "{", "(", ")", "=>", "{", "const", "{", "view", "}", "=", "model", ";", "if", "(", "view", ")", "{", "view", ".", "navToLocString", "(", "locString", ")", ";", "}", "else", "{", "session", ".", "notify", "(", "'No view associated with this feature detail panel anymore'", ",", "'warning'", ")", ";", "}", "}", "}", "href", "=", "\"#\"", ">", "{", "displayString", "}", "<", "/Link>", "<", "/li>);", "}", ")", "}", "<", "/ul>", "<", "/BaseCard>);", "}", "function", "PairLink", "(", "{", "locString", ",", "model", "}", ")", "{", "const", "session", "=", "getSession", "(", "model", ")", ";", "return", "(", "<", "Link", "onClick", "=", "{", "(", ")", "=>", "{", "const", "{", "view", "}", "=", "model", ";", "if", "(", "view", ")", "{", "view", ".", "navToLocString", "(", "locString", ")", ";", "}", "else", "{", "session", ".", "notify", "(", "'No view associated with this feature detail panel anymore'", ",", "'warning'", ")", ";", "}", "}", "}", "href", "=", "\"#\"", ">", "{", "locString", "}", "<", "/Link>);", "}", "function", "AlignmentFeatureDetails", "(", "props", ")", "{", "const", "{", "model", "}", "=", "props", ";", "const", "feat", "=", "JSON", ".", "parse", "(", "JSON", ".", "stringify", "(", "model", ".", "featureData", ")", ")", ";", "const", "SA", "=", "(", "feat", ".", "tags", "&&", "feat", ".", "tags", ".", "SA", ")", "||", "feat", ".", "SA", ";", "return", "(", "<", "Paper", "data", "-", "testid", "=", "\"alignment-side-drawer\"", ">", "<", "FeatureDetails", "{", "...", "props", "}", "omit", "=", "{", "omit", "}", "feature", "=", "{", "feat", "}", "formatter", "=", "{", "(", "value", ",", "key", ")", "=>", "{", "return", "key", "===", "'next_segment_position'", "?", "(", "<", "PairLink", "model", "=", "{", "model", "}", "locString", "=", "{", "value", "as", "string", "}", "/", ">", ")", ":", "(", "<", "Formatter", "value", "=", "{", "value", "}", "/", ">", ")", ";", "}", "}", "/>", "{", "SA", "?", "<", "SupplementaryAlignments", "model", "=", "{", "model", "}", "tag", "=", "{", "SA", "}", "/", ">", ":", "null", "}", "<", "AlignmentFlags", "feature", "=", "{", "feat", "}", "{", "...", "props", "}", "/>", "<", "/Paper>);", "}", "export", "default", "observer", "(", "AlignmentFeatureDetails", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 80, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, 9, null, 6, null, null, null, 80, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, 3, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660153
[ "import", "{", "lazy", "}", "from", "'react'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "ElementId", "}", "from", "'@jbrowse/core/util/types/mst'", ";", "import", "{", "types", "}", "from", "'mobx-state-tree'", ";", "import", "WidgetType", "from", "'@jbrowse/core/pluggableElementTypes/WidgetType'", ";", "const", "configSchema", "=", "ConfigurationSchema", "(", "'AlignmentsFeatureWidget'", ",", "{", "}", ")", ";", "export", "function", "stateModelFactory", "(", "pluginManager", ")", "{", "return", "types", ".", "model", "(", "'AlignmentsFeatureWidget'", ",", "{", "id", ":", "ElementId", ",", "type", ":", "types", ".", "literal", "(", "'AlignmentsFeatureWidget'", ")", ",", "featureData", ":", "types", ".", "frozen", "(", ")", ",", "view", ":", "types", ".", "safeReference", "(", "pluginManager", ".", "pluggableMstType", "(", "'view'", ",", "'stateModel'", ")", ")", ",", "}", ")", ".", "actions", "(", "self", "=>", "(", "{", "setFeatureData", "(", "data", ")", "{", "self", ".", "featureData", "=", "data", ";", "}", ",", "clearFeatureData", "(", ")", "{", "self", ".", "featureData", "=", "undefined", ";", "}", ",", "}", ")", ")", ";", "}", "export", "default", "function", "register", "(", "pluginManager", ")", "{", "pluginManager", ".", "addWidgetType", "(", "(", ")", "=>", "new", "WidgetType", "(", "{", "name", ":", "'AlignmentsFeatureWidget'", ",", "heading", ":", "'Feature details'", ",", "configSchema", ",", "stateModel", ":", "stateModelFactory", "(", "pluginManager", ")", ",", "ReactComponent", ":", "lazy", "(", "(", ")", "=>", "import", "(", "'./AlignmentsFeatureDetail'", ")", ")", ",", "}", ")", ")", ";", "}", "export", "{", "configSchema", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 731, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660154
[ "import", "{", "getAdapter", "}", "from", "'@jbrowse/core/data_adapters/dataAdapterCache'", ";", "import", "RpcMethodType", "from", "'@jbrowse/core/pluggableElementTypes/RpcMethodType'", ";", "import", "{", "RenderArgs", "}", "from", "'@jbrowse/core/rpc/coreRpcMethods'", ";", "import", "{", "renameRegionsIfNeeded", "}", "from", "'@jbrowse/core/util'", ";", "import", "{", "Region", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "{", "RemoteAbortSignal", "}", "from", "'@jbrowse/core/rpc/remoteAbortSignals'", ";", "import", "{", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "{", "BaseFeatureDataAdapter", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "import", "{", "getTagAlt", "}", "from", "'../util'", ";", "import", "{", "getModificationTypes", "}", "from", "'../BamAdapter/MismatchParser'", ";", "export", "class", "PileupGetGlobalValueForTag", "extends", "RpcMethodType", "{", "name", "=", "'PileupGetGlobalValueForTag'", ";", "async", "serializeArguments", "(", "args", ",", "rpcDriverClassName", ")", "{", "const", "{", "rootModel", "}", "=", "this", ".", "pluginManager", ";", "const", "assemblyManager", "=", "rootModel", "?.", "session", "?.", "assemblyManager", ";", "if", "(", "!", "assemblyManager", ")", "{", "throw", "new", "Error", "(", "'no assembly manager available'", ")", ";", "}", "const", "renamedArgs", "=", "await", "renameRegionsIfNeeded", "(", "assemblyManager", ",", "args", ")", ";", "return", "super", ".", "serializeArguments", "(", "renamedArgs", ",", "rpcDriverClassName", ")", ";", "}", "async", "execute", "(", "args", ",", "rpcDriverClassName", ")", "{", "const", "deserializedArgs", "=", "await", "this", ".", "deserializeArguments", "(", "args", ",", "rpcDriverClassName", ")", ";", "const", "{", "adapterConfig", ",", "sessionId", ",", "regions", ",", "tag", "}", "=", "deserializedArgs", ";", "const", "dataAdapter", "=", "(", "await", "getAdapter", "(", "this", ".", "pluginManager", ",", "sessionId", ",", "adapterConfig", ")", ")", ".", "dataAdapter", "as", "BaseFeatureDataAdapter", ";", "const", "features", "=", "dataAdapter", ".", "getFeaturesInMultipleRegions", "(", "regions", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "uniqueValues", "=", "new", "Set", "<", "string", ">", "(", ")", ";", "featuresArray", ".", "forEach", "(", "feature", "=>", "{", "const", "tags", "=", "feature", ".", "get", "(", "'tags'", ")", ";", "const", "val", "=", "tags", "?", "tags", "[", "tag", "]", ":", "feature", ".", "get", "(", "tag", ")", ";", "if", "(", "val", "!==", "undefined", ")", "{", "uniqueValues", ".", "add", "(", "`${", "val", "}`", ")", ";", "}", "}", ")", ";", "return", "[", "...", "uniqueValues", "]", ";", "}", "}", "export", "class", "PileupGetVisibleModifications", "extends", "RpcMethodType", "{", "name", "=", "'PileupGetVisibleModifications'", ";", "async", "serializeArguments", "(", "args", ",", "rpcDriverClassName", ")", "{", "const", "{", "rootModel", "}", "=", "this", ".", "pluginManager", ";", "const", "assemblyManager", "=", "rootModel", "?.", "session", "?.", "assemblyManager", ";", "if", "(", "!", "assemblyManager", ")", "{", "throw", "new", "Error", "(", "'no assembly manager available'", ")", ";", "}", "const", "renamedArgs", "=", "await", "renameRegionsIfNeeded", "(", "assemblyManager", ",", "args", ")", ";", "return", "super", ".", "serializeArguments", "(", "renamedArgs", ",", "rpcDriverClassName", ")", ";", "}", "async", "execute", "(", "args", ",", "rpcDriverClassName", ")", "{", "const", "deserializedArgs", "=", "await", "this", ".", "deserializeArguments", "(", "args", ",", "rpcDriverClassName", ")", ";", "const", "{", "adapterConfig", ",", "sessionId", ",", "regions", "}", "=", "deserializedArgs", ";", "const", "dataAdapter", "=", "(", "await", "getAdapter", "(", "this", ".", "pluginManager", ",", "sessionId", ",", "adapterConfig", ")", ")", ".", "dataAdapter", "as", "BaseFeatureDataAdapter", ";", "const", "features", "=", "dataAdapter", ".", "getFeaturesInMultipleRegions", "(", "regions", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "uniqueValues", "=", "new", "Set", "<", "string", ">", "(", ")", ";", "featuresArray", ".", "forEach", "(", "feature", "=>", "{", "const", "val", "=", "(", "getTagAlt", "(", "feature", ",", "'MM'", ",", "'Mm'", ")", "as", "string", ")", "||", "''", ";", "if", "(", "val", "!==", "undefined", ")", "{", "getModificationTypes", "(", "val", ")", ".", "forEach", "(", "t", "=>", "uniqueValues", ".", "add", "(", "t", ")", ")", ";", "}", "}", ")", ";", "return", "[", "...", "uniqueValues", "]", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 6, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 30, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 6, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 30, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660155
[ "import", "{", "FileLocation", "}", "from", "'@jbrowse/core/util/types'", ";", "import", "Plugin", "from", "'@jbrowse/core/Plugin'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "*", "as", "MismatchParser", "from", "'./BamAdapter/MismatchParser'", ";", "import", "{", "LinearPileupDisplayModel", "}", "from", "'./LinearPileupDisplay/model'", ";", "import", "BamAdapterF", "from", "'./CramAdapter'", ";", "import", "CramAdapterF", "from", "'./BamAdapter'", ";", "import", "HtsgetBamAdapterF", "from", "'./HtsgetBamAdapter'", ";", "import", "SNPCoverageAdapterF", "from", "'./SNPCoverageAdapter'", ";", "import", "SNPCoverageRendererF", "from", "'./SNPCoverageRenderer'", ";", "import", "PileupRendererF", "from", "'./PileupRenderer'", ";", "import", "LinearAlignmentsDisplayF", "from", "'./LinearAlignmentsDisplay'", ";", "import", "LinearSNPCoverageDisplayF", "from", "'./LinearSNPCoverageDisplay'", ";", "import", "LinearPileupDisplayF", "from", "'./LinearPileupDisplay'", ";", "import", "AlignmentsTrackF", "from", "'./AlignmentsTrack'", ";", "import", "AlignmentsFeatureWidgetF", "from", "'./AlignmentsFeatureDetail'", ";", "import", "{", "PileupGetGlobalValueForTag", ",", "PileupGetVisibleModifications", ",", "}", "from", "'./PileupRPC/rpcMethods'", ";", "import", "{", "makeIndex", ",", "makeIndexType", ",", "getFileName", ",", "AdapterGuesser", ",", "TrackTypeGuesser", ",", "}", "from", "'@jbrowse/core/util/tracks'", ";", "export", "{", "MismatchParser", "}", ";", "export", "type", "{", "LinearPileupDisplayModel", "}", ";", "export", "default", "class", "AlignmentsPlugin", "extends", "Plugin", "{", "name", "=", "'AlignmentsPlugin'", ";", "install", "(", "pluginManager", ")", "{", ";", "[", "CramAdapterF", ",", "BamAdapterF", ",", "LinearPileupDisplayF", ",", "LinearSNPCoverageDisplayF", ",", "AlignmentsTrackF", ",", "SNPCoverageAdapterF", ",", "HtsgetBamAdapterF", ",", "PileupRendererF", ",", "SNPCoverageRendererF", ",", "LinearAlignmentsDisplayF", ",", "AlignmentsFeatureWidgetF", ",", "]", ".", "map", "(", "f", "=>", "f", "(", "pluginManager", ")", ")", ";", "pluginManager", ".", "addToExtensionPoint", "(", "'Core-guessAdapterForLocation'", ",", "(", "adapterGuesser", ")", "=>", "{", "return", "(", "file", ",", "index", "?", ",", "adapterHint", "?", ")", "=>", "{", "const", "regexGuess", "=", "/\\.cram$/i", ";", "const", "adapterName", "=", "'CramAdapter'", ";", "const", "fileName", "=", "getFileName", "(", "file", ")", ";", "if", "(", "regexGuess", ".", "test", "(", "fileName", ")", "||", "adapterHint", "===", "adapterName", ")", "{", "return", "{", "type", ":", "adapterName", ",", "cramLocation", ":", "file", ",", "craiLocation", ":", "index", "||", "makeIndex", "(", "file", ",", "'.crai'", ")", ",", "}", ";", "}", "return", "adapterGuesser", "(", "file", ",", "index", ",", "adapterHint", ")", ";", "}", ";", "}", ")", ";", "pluginManager", ".", "addToExtensionPoint", "(", "'Core-guessAdapterForLocation'", ",", "(", "adapterGuesser", ")", "=>", "{", "return", "(", "file", ",", "index", "?", ",", "adapterHint", "?", ")", "=>", "{", "const", "regexGuess", "=", "/\\.bam$/i", ";", "const", "adapterName", "=", "'BamAdapter'", ";", "const", "fileName", "=", "getFileName", "(", "file", ")", ";", "const", "indexName", "=", "index", "&&", "getFileName", "(", "index", ")", ";", "if", "(", "regexGuess", ".", "test", "(", "fileName", ")", "||", "adapterHint", "===", "adapterName", ")", "{", "return", "{", "type", ":", "adapterName", ",", "bamLocation", ":", "file", ",", "index", ":", "{", "location", ":", "index", "||", "makeIndex", "(", "file", ",", "'.bai'", ")", ",", "indexType", ":", "makeIndexType", "(", "indexName", ",", "'CSI'", ",", "'BAI'", ")", ",", "}", ",", "}", ";", "}", "return", "adapterGuesser", "(", "file", ",", "index", ",", "adapterHint", ")", ";", "}", ";", "}", ")", ";", "pluginManager", ".", "addToExtensionPoint", "(", "'Core-guessTrackTypeForLocation'", ",", "(", "trackTypeGuesser", ")", "=>", "{", "return", "(", "adapterName", ")", "=>", "{", "if", "(", "adapterName", "===", "'BamAdapter'", "||", "adapterName", "===", "'CramAdapter'", ")", "{", "return", "'AlignmentsTrack'", ";", "}", "return", "trackTypeGuesser", "(", "adapterName", ")", ";", "}", ";", "}", ")", ";", "pluginManager", ".", "addRpcMethod", "(", "(", ")", "=>", "new", "PileupGetGlobalValueForTag", "(", "pluginManager", ")", ")", ";", "pluginManager", ".", "addRpcMethod", "(", "(", ")", "=>", "new", "PileupGetVisibleModifications", "(", "pluginManager", ")", ")", ";", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3083, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 42495, null, null, null, null, null, 13045, null, 13045, null, null, 2, null, null, null, null, null, 27, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 42495, null, null, null, null, null, 13045, null, 13045, null, null, 2, null, null, null, null, null, 27, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660156
[ "import", "{", "render", "}", "from", "'@testing-library/react'", ";", "import", "{", "types", "}", "from", "'mobx-state-tree'", ";", "import", "React", "from", "'react'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration'", ";", "import", "{", "stateModelFactory", "}", "from", "'.'", ";", "import", "ReactComponent", "from", "'./AlignmentsFeatureDetail'", ";", "test", "(", "'open up a widget'", ",", "(", ")", "=>", "{", "console", ".", "warn", "=", "jest", ".", "fn", "(", ")", ";", "const", "pluginManager", "=", "new", "PluginManager", "(", "[", "]", ")", ";", "const", "Session", "=", "types", ".", "model", "(", "{", "pluginManager", ":", "types", ".", "optional", "(", "types", ".", "frozen", "(", ")", ",", "{", "}", ")", ",", "rpcManager", ":", "types", ".", "optional", "(", "types", ".", "frozen", "(", ")", ",", "{", "}", ")", ",", "configuration", ":", "ConfigurationSchema", "(", "'test'", ",", "{", "}", ")", ",", "widget", ":", "stateModelFactory", "(", "pluginManager", ")", ",", "}", ")", ";", "const", "session", "=", "Session", ".", "create", "(", "{", "widget", ":", "{", "type", ":", "'AlignmentsFeatureWidget'", "}", ",", "}", ")", ";", "session", ".", "widget", ".", "setFeatureData", "(", "{", "seq", ":", "'TTGTTGCGGAGTTGAACAACGGCATTAGGAACACTTCCGTCTCTCACTTTTATACGATTATGATTGGTTCTTTAGCCTTGGTTTAGATTGGTAGTAGTAG'", ",", "start", ":", "2", ",", "end", ":", "102", ",", "strand", ":", "1", ",", "score", ":", "37", ",", "qual", ":", "'17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17'", ",", "MQ", ":", "37", ",", "CIGAR", ":", "'100M'", ",", "length_on_ref", ":", "100", ",", "template_length", ":", "0", ",", "seq_length", ":", "100", ",", "name", ":", "'ctgA_3_555_0:0:0_2:0:0_102d'", ",", "refName", ":", "'ctgA'", ",", "type", ":", "'match'", ",", "}", ")", ";", "const", "{", "container", ",", "getByText", "}", "=", "render", "(", "<", "ReactComponent", "model", "=", "{", "session", ".", "widget", "}", "/", ">", ")", ";", "expect", "(", "container", ".", "firstChild", ")", ".", "toMatchSnapshot", "(", ")", ";", "expect", "(", "getByText", "(", "'ctgA:3..102 (+)'", ")", ")", ".", "toBeTruthy", "(", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 731, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660157
[ "import", "{", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "Adapter", "from", "'./BamAdapter'", ";", "import", "configSchema", "from", "'./configSchema'", ";", "test", "(", "'adapter can fetch features from volvox.bam'", ",", "async", "(", ")", "=>", "{", "const", "adapter", "=", "new", "Adapter", "(", "configSchema", ".", "create", "(", "{", "bamLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.bam'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "index", ":", "{", "location", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.bam.bai'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "}", ",", "}", ")", ")", ";", "const", "features", "=", "adapter", ".", "getFeatures", "(", "{", "assemblyName", ":", "'volvox'", ",", "refName", ":", "'ctgA'", ",", "start", ":", "0", ",", "end", ":", "20000", ",", "}", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "expect", "(", "featuresArray", "[", "0", "]", ".", "get", "(", "'refName'", ")", ")", ".", "toBe", "(", "'ctgA'", ")", ";", "const", "featuresJsonArray", "=", "featuresArray", ".", "map", "(", "f", "=>", "f", ".", "toJSON", "(", ")", ")", ";", "expect", "(", "featuresJsonArray", ".", "length", ")", ".", "toEqual", "(", "3809", ")", ";", "expect", "(", "featuresJsonArray", ".", "slice", "(", "1000", ",", "1010", ")", ")", ".", "toMatchSnapshot", "(", ")", ";", "expect", "(", "adapter", ".", "refIdToName", "(", "0", ")", ")", ".", "toBe", "(", "'ctgA'", ")", ";", "expect", "(", "adapter", ".", "refIdToName", "(", "1", ")", ")", ".", "toBe", "(", "undefined", ")", ";", "expect", "(", "await", "adapter", ".", "hasDataForRefName", "(", "'ctgA'", ")", ")", ".", "toBe", "(", "true", ")", ";", "const", "adapterCSI", "=", "new", "Adapter", "(", "configSchema", ".", "create", "(", "{", "bamLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.bam'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "index", ":", "{", "indexType", ":", "'CSI'", ",", "location", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.bam.csi'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "}", ",", "}", ")", ")", ";", "const", "featuresCSI", "=", "adapterCSI", ".", "getFeatures", "(", "{", "assemblyName", ":", "'volvox'", ",", "refName", ":", "'ctgA'", ",", "start", ":", "0", ",", "end", ":", "20000", ",", "}", ")", ";", "const", "featuresArrayCSI", "=", "await", "featuresCSI", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "featuresJsonArrayCSI", "=", "featuresArrayCSI", ".", "map", "(", "f", "=>", "f", ".", "toJSON", "(", ")", ")", ";", "expect", "(", "featuresJsonArrayCSI", ")", ".", "toEqual", "(", "featuresJsonArray", ")", ";", "}", ")", ";", "test", "(", "'test usage of BamSlightlyLazyFeature toJSON (used in the widget)'", ",", "async", "(", ")", "=>", "{", "const", "adapter", "=", "new", "Adapter", "(", "configSchema", ".", "create", "(", "{", "bamLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.bam'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "index", ":", "{", "location", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.bam.bai'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "indexType", ":", "'BAI'", ",", "}", ",", "}", ")", ")", ";", "const", "features", "=", "adapter", ".", "getFeatures", "(", "{", "assemblyName", ":", "'volvox'", ",", "refName", ":", "'ctgA'", ",", "start", ":", "0", ",", "end", ":", "100", ",", "}", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "f", "=", "featuresArray", "[", "0", "]", ".", "toJSON", "(", ")", ";", "expect", "(", "f", ".", "refName", ")", ".", "toBe", "(", "'ctgA'", ")", ";", "expect", "(", "f", ".", "start", ")", ".", "toBe", "(", "2", ")", ";", "expect", "(", "f", ".", "end", ")", ".", "toBe", "(", "102", ")", ";", "expect", "(", "f", ".", "mismatches", ")", ".", "not", ".", "toBeTruthy", "(", ")", ";", "}", ")", ";", "test", "(", "'test usage of BamSlightlyLazyFeature for extended CIGAR'", ",", "async", "(", ")", "=>", "{", "const", "adapter", "=", "new", "Adapter", "(", "configSchema", ".", "create", "(", "{", "bamLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/extended_cigar.bam'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "index", ":", "{", "location", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/extended_cigar.bam.bai'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "indexType", ":", "'BAI'", ",", "}", ",", "}", ")", ")", ";", "const", "features", "=", "adapter", ".", "getFeatures", "(", "{", "assemblyName", ":", "'hg19'", ",", "refName", ":", "'1'", ",", "start", ":", "13260", ",", "end", ":", "13340", ",", "}", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "f", "=", "featuresArray", "[", "0", "]", ";", "expect", "(", "f", ".", "get", "(", "'mismatches'", ")", ")", ".", "toMatchSnapshot", "(", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660158
[ "import", "{", "generateMD", ",", "getMismatches", ",", "cigarToMismatches", ",", "parseCigar", ",", "mdToMismatches", ",", "getNextRefPos", ",", "getModificationPositions", ",", "}", "from", "'./MismatchParser'", ";", "const", "seq", "=", "'AAAAAAAAAACAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTT'", ";", "test", "(", "'cigar to mismatches'", ",", "(", ")", "=>", "{", "expect", "(", "cigarToMismatches", "(", "parseCigar", "(", "'56M1D45M'", ")", ",", "seq", ")", ")", ".", "toEqual", "(", "[", "{", "start", ":", "56", ",", "type", ":", "'deletion'", ",", "base", ":", "'*'", ",", "length", ":", "1", "}", ",", "]", ")", ";", "}", ")", ";", "test", "(", "'md to mismatches'", ",", "(", ")", "=>", "{", "const", "cigarMismatches", "=", "cigarToMismatches", "(", "parseCigar", "(", "'56M1D45M'", ")", ",", "seq", ")", ";", "expect", "(", "mdToMismatches", "(", "'10A80'", ",", "parseCigar", "(", "'56M1D45M'", ")", ",", "cigarMismatches", ",", "seq", ")", ")", ".", "toEqual", "(", "[", "{", "start", ":", "10", ",", "type", ":", "'mismatch'", ",", "base", ":", "'C'", ",", "altbase", ":", "'A'", ",", "length", ":", "1", "}", ",", "]", ")", ";", "}", ")", ";", "test", "(", "'get mismatches'", ",", "(", ")", "=>", "{", "expect", "(", "getMismatches", "(", "'56M1D45M'", ",", "'56^A45'", ",", "seq", ")", ")", ".", "toEqual", "(", "[", "{", "start", ":", "56", ",", "type", ":", "'deletion'", ",", "base", ":", "'*'", ",", "length", ":", "1", "}", ",", "]", ")", ";", "expect", "(", "getMismatches", "(", "'89M1I11M'", ",", "'100'", ",", "'AAAAAAAAAACAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTA'", ")", ")", ".", "toEqual", "(", "[", "{", "start", ":", "89", ",", "type", ":", "'insertion'", ",", "base", ":", "'1'", ",", "length", ":", "0", "}", "]", ")", ";", "expect", "(", "getMismatches", "(", "'5M2D6M'", ",", "'5^AC0C5'", ",", "'GGGGGATTTTTT'", ")", ")", ".", "toEqual", "(", "[", "{", "start", ":", "5", ",", "type", ":", "'deletion'", ",", "base", ":", "'*'", ",", "length", ":", "2", "}", ",", "{", "start", ":", "7", ",", "type", ":", "'mismatch'", ",", "base", ":", "'A'", ",", "altbase", ":", "'C'", ",", "length", ":", "1", "}", ",", "]", ")", ";", "expect", "(", "getMismatches", "(", "'12M'", ",", "'5A0C5'", ",", "'GGGGGCATTTTT'", ")", ")", ".", "toEqual", "(", "[", "{", "altbase", ":", "'A'", ",", "base", ":", "'C'", ",", "length", ":", "1", ",", "start", ":", "5", ",", "type", ":", "'mismatch'", "}", ",", "{", "altbase", ":", "'C'", ",", "base", ":", "'A'", ",", "length", ":", "1", ",", "start", ":", "6", ",", "type", ":", "'mismatch'", "}", ",", "]", ")", ";", "expect", "(", "getMismatches", "(", "'12M'", ",", "'5AC5'", ",", "'GGGGGCATTTTT'", ")", ")", ".", "toEqual", "(", "[", "{", "altbase", ":", "'A'", ",", "base", ":", "'C'", ",", "length", ":", "1", ",", "start", ":", "5", ",", "type", ":", "'mismatch'", "}", ",", "{", "altbase", ":", "'C'", ",", "base", ":", "'A'", ",", "length", ":", "1", ",", "start", ":", "6", ",", "type", ":", "'mismatch'", "}", ",", "]", ")", ";", "}", ")", ";", "test", "(", "'basic skip'", ",", "(", ")", "=>", "{", "expect", "(", "getMismatches", "(", "'6M200N6M'", ",", "'5AC5'", ",", "'GGGGGCATTTTT'", ")", ")", ".", "toEqual", "(", "[", "{", "base", ":", "'N'", ",", "length", ":", "200", ",", "start", ":", "6", ",", "type", ":", "'skip'", "}", ",", "{", "altbase", ":", "'A'", ",", "base", ":", "'C'", ",", "length", ":", "1", ",", "start", ":", "5", ",", "type", ":", "'mismatch'", "}", ",", "{", "altbase", ":", "'C'", ",", "base", ":", "'A'", ",", "length", ":", "1", ",", "start", ":", "206", ",", "type", ":", "'mismatch'", "}", ",", "]", ")", ";", "}", ")", ";", "test", "(", "'vsbuffalo'", ",", "(", ")", "=>", "{", "expect", "(", "getMismatches", "(", "'89M1I11M'", ",", "'100'", ",", "'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'", ")", ")", ".", "toEqual", "(", "[", "{", "base", ":", "'1'", ",", "length", ":", "0", ",", "start", ":", "89", ",", "type", ":", "'insertion'", "}", "]", ")", ";", "expect", "(", "getMismatches", "(", "'9M1I91M'", ",", "'48T42G8'", ",", "'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'", ")", ")", ".", "toEqual", "(", "[", "{", "base", ":", "'1'", ",", "length", ":", "0", ",", "start", ":", "9", ",", "type", ":", "'insertion'", "}", ",", "{", "altbase", ":", "'T'", ",", "base", ":", "'A'", ",", "length", ":", "1", ",", "start", ":", "48", ",", "type", ":", "'mismatch'", ",", "}", ",", "{", "altbase", ":", "'G'", ",", "base", ":", "'A'", ",", "length", ":", "1", ",", "start", ":", "91", ",", "type", ":", "'mismatch'", ",", "}", ",", "]", ")", ";", "}", ")", ";", "test", "(", "'more skip'", ",", "(", ")", "=>", "{", "expect", "(", "getMismatches", "(", "'3M200N3M200N3M'", ",", "'8A'", ",", "'GGGGGCATTTTT'", ")", ")", ".", "toEqual", "(", "[", "{", "base", ":", "'N'", ",", "length", ":", "200", ",", "start", ":", "3", ",", "type", ":", "'skip'", "}", ",", "{", "base", ":", "'N'", ",", "length", ":", "200", ",", "start", ":", "206", ",", "type", ":", "'skip'", "}", ",", "{", "altbase", ":", "'A'", ",", "base", ":", "'T'", ",", "length", ":", "1", ",", "start", ":", "408", ",", "type", ":", "'mismatch'", "}", ",", "]", ")", ";", "expect", "(", "getMismatches", "(", "'31M1I17M1D37M'", ",", "'6G4C20G1A5C5A1^C3A15G1G15'", ",", "seq", ")", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "start", "-", "b", ".", "start", ")", ")", ".", "toMatchInlineSnapshot", "(", "`\n Array [\n Object {\n \"altbase\": \"G\",\n \"base\": \"A\",\n \"length\": 1,\n \"start\": 6,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"C\",\n \"base\": \"A\",\n \"length\": 1,\n \"start\": 11,\n \"type\": \"mismatch\",\n },\n Object {\n \"base\": \"1\",\n \"length\": 0,\n \"start\": 31,\n \"type\": \"insertion\",\n },\n Object {\n \"altbase\": \"G\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 32,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"A\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 34,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"C\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 40,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"A\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 46,\n \"type\": \"mismatch\",\n },\n Object {\n \"base\": \"*\",\n \"length\": 1,\n \"start\": 48,\n \"type\": \"deletion\",\n },\n Object {\n \"altbase\": \"A\",\n \"base\": \"G\",\n \"length\": 1,\n \"start\": 52,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"G\",\n \"base\": \"G\",\n \"length\": 1,\n \"start\": 68,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"G\",\n \"base\": \"G\",\n \"length\": 1,\n \"start\": 70,\n \"type\": \"mismatch\",\n },\n ]\n `", ")", ";", "}", ")", ";", "test", "(", "'clipping'", ",", "(", ")", "=>", "{", "expect", "(", "getMismatches", "(", "'200H10M200H'", ",", "'9A'", ",", "'AAAAAAAAAC'", ")", ")", ".", "toEqual", "(", "[", "{", "cliplen", ":", "200", ",", "base", ":", "'H200'", ",", "length", ":", "1", ",", "start", ":", "0", ",", "type", ":", "'hardclip'", "}", ",", "{", "cliplen", ":", "200", ",", "base", ":", "'H200'", ",", "length", ":", "1", ",", "start", ":", "10", ",", "type", ":", "'hardclip'", "}", ",", "{", "altbase", ":", "'A'", ",", "base", ":", "'C'", ",", "length", ":", "1", ",", "start", ":", "9", ",", "type", ":", "'mismatch'", "}", ",", "]", ")", ";", "expect", "(", "getMismatches", "(", "'10S10M10S'", ",", "'9A'", ",", "'AAAAAAAAAAGGGGGGGGGC'", ")", ")", ".", "toEqual", "(", "[", "{", "cliplen", ":", "10", ",", "base", ":", "'S10'", ",", "length", ":", "1", ",", "start", ":", "0", ",", "type", ":", "'softclip'", "}", ",", "{", "cliplen", ":", "10", ",", "base", ":", "'S10'", ",", "length", ":", "1", ",", "start", ":", "10", ",", "type", ":", "'softclip'", "}", ",", "{", "altbase", ":", "'A'", ",", "base", ":", "'C'", ",", "length", ":", "1", ",", "start", ":", "9", ",", "type", ":", "'mismatch'", "}", ",", "]", ")", ";", "}", ")", ";", "test", "(", "'md generation'", ",", "(", ")", "=>", "{", "const", "query", "=", "`CACACTAGCCCGTCAGCGAACGCGTGCGCGGCCGCTGCCCTGCAGCGAATGGGGCTAACGACGCATAAAACGCCCGCATA\nACCACTCGAGCTACGGGAAATTCACTCAGGCTGTGTTGCTTCGACGTGTAGATCTCATTCACATATCATAATACCTCCAA\nGACCAACGGCTGCTCATGACTCTCTTACCTTGTTAGGGACATTTCGGCACTAGGGAAGAGCTGAGGACTTTGAAAACGTC\nGATAAAACCATCGCGGGAACTAGCCTGCGTTAGAACTCCCATATTTTACGGGTCGCAAGCTTGAGAGTCCTGTCCCGGCA\nGCTGCAAGTGCTACGGCAGGAGGGGATCTACCATAACGTGCAGTAAGACCCCTGCCCGTAATGAGGCGGTACTCGTCTCT\nAATCGTCAGTAGTTACTATGTCCGAGGACGTGCCTCTACGAGTTGAACTCTGGCTAGGCCCACCTGTCCGCGCCACTGCT\nCGGGTACCCCATCTGCTTTATCCAACTTCACCTGCGCCTTAACGGAATCTCTGGTTGCCAGTCATCCGATGGTCATTAAG\nCAGCGTGGTACATCGTAAGCCAATACTTCAGGGCGCCTAGCCATATTCCCAGCCAAGCGGCTGCATAATTACAAGCGCTG\nGCACGACTAATCGATCCCACGAAGCCTGGGAGATGACCCTAGCCCTAAAAGTCTGCCCTCGTGACCTATCTGCCACGTGA\nTACTTGATATATTTGTAATGAGCGGAGCAGGGTAGATGACTAATATACAGGGTCGTCTAGGTTTGCACGAATGCAGACAT\nCATCCGCGCAAGGCCCGGACGGCTGTACTCACACAAGCGTAGGTCTCCATTCTCCCTCAGCCAGCACTAAGATTCCCACG\nTGACCAGGGCGACGGGCCCTCAGCCAAACGTATACCTTGATATCTACTTAAGTCAAGGTTGACTCCGAACCCTATGGGTC\nGGTGCCGTTAACAGGGAGTCTATAGTCTCGGCGTTTCCATTGTTGTTTCAAACTCCTGCTTATAAGGGTGAAAGCGCTGG\nAGGGCATAGTTTATGCCCAAAGTTGCGCGTAGATCCGTCGGGATAGTGTGCTATAATAAGGACTGCTCGAGGTGTAGGCG\nGTAACGGCTCCCGCCTTCAGTAGGGCGCGGAACTCGAATCGGAGTTACAGGACTTGACCCGAGTCATATCCAAGTTTATG\nTTAGCCCGATCGGATCTCGGATGCTCGTATCTGCGACGAGGTCGAAGACGGACGAAATACGATTCAACCGCGCGAACCAT\nTGCATCTAACCTTTAGCCTCAATGGGTGTTAACGTGGTGGTGCTCACTGGTCGTACTCTTTTGTGCAACTACTTCCAGTA\nTGAACAACAGTCAAGTTGCGACATGATGCCTCTTTACGTGATTCCCACAGTTTCCCACCTCAGGATGCTTGCTTCTTTAG\nCTAAACCCAATAGTTATGGCGGCCACCTTCAGACGTCCCACGAGGACGGCTATGACGTTGCTAAACGCATTCGCCGCCGA\nAAGGTAGCGCTAACGAGTTCTGTAGAGTTTGTTCCGGGCCAGATCTCCAGGATGGTCGCAACAACGCAGTACCGGTTTTA\nTACTGGTGAACCCTCTACCTGTTATTAAGTTTACAGCGTTGTCCTACGGTACATGGTCGTGAGTACTCGCGTAGTCAAAC\nGCCAGGACTAGCAGCGAGAATTATTGGTCGCGATACTTACTACAATAACTTACCCGATATTGACAGTGCAGGGTTGAAAG\nAGATGGACAGTTGAATATCTACTTTTGACGGAATCCTCAAAACTCCCTCCACCTACAGGTAACGGCCCTGTCCGGGACCG\nCTTTCTTGCATATATTGGTTTCCACAGAGCGTATCTAAGTTAGTCTCTTGACCGTTCACCGACTCTAGGGCGACTCGTTA\nTCGCCCTCCGAAACGATGCTATTCGTTACCTCAATGATGACAGTTGGTCAGACGTAAGTGATCCCAATCTCACTCGTGCC\nTTGTCCACCAGTTCCGTGAAGACGAAGCAATACGCGGAATACGTGGCTTCGTAATATTTTGACGATATGGGGCTGGGACG\nCTCAAGACTTCCAGTGACAAACAAAGTGAAGAGCAACTTGCATCCCTCATCATGACACTATTACCAGAGTAGCCGATGGA\nTTAACGCTAATTTGGTCAGGGCAGCTATCGCATCCCGCAGGTGTAGGCGGAGACTTTTTTTTTTTGCGAGTTGACAGGTA\nATCTCACGGTATAAGCACGGTTATTTACGCAAGCGACGTCCCTGGGAGAATCCGCCCACGGTAGGACCCCATAATCCATA\nAATACTGCGGTCGAAACCGTTCATATCGTGATCAGGAACCTGCTTTCTAGGGATGCGGTCCCCGCATTCAGAGTTCTACT\nTTGGCCAGCGTGAGACGTTAACAACCCACTTACGCGGTACATTGAAGTCGTTCGAGTCCAGTGTGACCTGTGTACCGAAT\nAACGTGTAGACCAGCGCGTCTACGACTTAGCGCGGCTCCACTCCAAAGCACCTTTTGGGACTTTGCCAACGAGCCTGTTG\nGCCGTTAAGCGGTATTTGCACAAACTAGATCACCCTAGTGTCGGTAACCGACTCACCCTATTGGGATCATCGTGAGCTCG\nAAACACTAGGCGGACCAACGGATGAGCATTTGATTCGGCTCTACAGAGCTTGTCGCCAGAGAAAAACTGTGGCAACTCTA\nCGCTCGCGGGGAATTGACTTTAGCGGCCCCCTAGACAGGTGTGGGACACCTAGTCTAGATTCACGTCCTACACGACATAA\nCAGCACCTTCCTGGCCAGCCCAGAAATATGTACCTGGACGACACTCCAGTCCTTCCGACGCCATAATGTGAGCCGTAGCG\nCCCACGACGATCAACGAGGAGAAATTTACAAAGGCTAGTGTGAATGCTACGTCGTCTACCCATTGCTCCATCGAAACGAA\nCGCAACGCACAGCATACAACGTTCTACCATGCCGGAGCGCGGATCCTCAAGTACAGAAAACAGTAGGTCTAAACATGATC\nCGAACAAATCGGTAGGTTTACACAGCTACCTCCGTCCATATGGCGTACTGCATCGATCGTGCTTACTACGGTCATCGCCG\nGCCCGCGATGCACGTACGAAGGAATACCCTGTCTGCCCCCGCGCGAGCTTACGCTGTCTCGCACATACCGAGCACTGTCG\nCTTCGAAGCTAAACTATGAGCCCAGCCGAGCTCCTTATGGCCGCAACGCTGGTGCGCCAGTCTGATAAATTCCACACGTA\nCACGATCCTCGTGTAAGATCTCGGGCAGTAGTAAGTCATTATCACATGGTTAGGAGATGATAGAATACATGGGTTCTGGT\nAGCTACAACACAGGATTTGTGAACCCTTGGCCCTTTGGTGAGTGCTACAATAAAATTCTCCGTATGGGACTAACCTAAAG\nGGTGCTGCGATTGACTTCCCGGCCCAGGTTAGATGTCCATATCATTCATACATTCCCGACCGACCCAATGCCTAAATCAG\nAGGCGCCTTAGCTAGTTCTTGTATGTGTGCCACGATCCAGGCCACGCAGACACGACCCCTCGGCGAGTGATCACCATTAC\nCGGATTTGGCATCGAAGTCTTTTTCTGGGAAGTTAGCCAGTTTGGTGTGCGGTGCTTAGAATCTTATTCCCAGTCAAACG\nCCCCTGAGGACGAATTGCTATACCCTAGTTGCCACGCCGGAACCATCTTCGGGAGAGTAGACAAATCCGAGTTAGATATG\nTTAGCGTCTTCGTGGAGTCTGAAATGTATCACTTCTACCAGCAGAATACGCGAATGTCTGTTTGCCCTGGATGAGCGGAA\nTTGGCTTAAAAGCACAGACTACGAGCATTTTGAGTACGGTTCCATATCGCGATGTAATTACCTATACTAGGTTATCGCTA\nGTACGAATAGCGAAGTACAGTGTAGCAGGCCCTTTGTTAGCAAGTTGCTCTAAACAGTTGTCAATACGTAGGCACAATAG\nTGCGATATCTTCCTAAATCCGGGAAGCCATGGCGCTGGGCAGAATATCACATACGGAATAATCAACCTCCATATTTGGTT\nCGTTTTACTCGATGAGTGCCCCTTGCTTGAGACGAGCGTTCTGAGTTGATGGCATGTCGAAAGGTTTACGCGGTGAGTAG\nAGCACTCTTGACCCCTACAGATCGGAATCCTCGGAGGTAGGACAGTTGGAACTTCACAGTTAACCTTTGTTCGATTGCAT\nGAAGGTTGTGTTCTGGGAGTAGGCTCCCAAGGTAGCGGTTCATGCCTGGGGGCAGCCCTAAGTTTGTATATATGTGAGTT\nTGCGTCTGAACACATTATAGCATGAGGAAACGTAAGCTTTCTGGAGGGATCTTCTAAAGCCAGGTATCGCCCGCTACGAT\nGCCGGAGCGCAGGGTGGATTCACAGCTACCTCGTGCCTCAAAGGCTTAAGGCTAATCCATAGCAACAGTGCGAAAGGACG\nTCCTTTCAGATTTCGAAAGGTGCTGACACATACAAGGGTCAGGGCGGTCCTACCCTTCTGATGTCCCTACCTGGTTTTTT\nAGCAAGGGTCAAGGCTAGGCTTATACTCCCGAACGCTTTAAACATCTATTCCCACCCCTGACGGGGGGAAGTTGCCGCGT\nTAAGTATAAGAATAAGATTTAACAGTACACTTTAGGTTCCTCTTCCGCGAGCCGTCATACAGCACCGAGCGCCGTTGAAA\nCGCAATTAACGCGTATTTGTCGCTGCGAAAAAAAAACGCTCGCCAGCATATTGGAGTGTCGACTTGAAATATTGAACAAC\nACCGCATATCAAGACGAATAGTAGGGCTTCACTACCTCCACCTGACGGCCCTAGGACTTATACTCGAAAAAGACCTTCCA\nTCACGATGTCCCTTACCGGCGAGAGTGCTATAATACGCATGAATAGCAGATCTTGCCGTCGCTGAGTGTCACCCAGGGTT\nGCTCCCAGAAAGAGATAGGGCGGAGAGCCATCGACAGCAGCTCTCGATCTAGGTGGTAGCAGGCTAAGGAGTCGTGTCGT\nCGCGCCCGAGTTGGAACCATTATCGATGTACATCAATGCAGTGAATGATGCTGATAGACTCGGGAGTTTGCCTCAAAACC\nCCAGAGTTACGTAGAAGACGCAGGTCTATTAGTTAGAAGGAGTCAGTATTGGCCTTTGAAAGATCTTATGCTCATGCCCT\nAATCGTAGTTAAACGGCGAATCCGTGGAAGGCCAATCTGGCCGGTTTTGACCCCCGGACTCTTAAGACGTCCAATGTGGC\nTAGACATAAGTCAACGAATTACCTATACCGAGGGCGGGAACCGGCCAATTTATTACGAGAGCACGAGAGCCTTGTAGCGA\nCCCAGCACACTAGTCCTCGAGTCCCTCTCATCCTGAGACGTAGAATAGCATATACCGCCTAGGAGAGAATGAGCGCGTCT\nAGGCTTCCGTCGCCCTCTCCGTCGTCTCGGGTGAACCGTAAGTCCTTCCGCATTCCCTTACCTCAAGCGCGTTGGTGTGA\nAGTGGTATTGAGGCCCAGTCTCTATAACGCATATACTTGTGCACTCTATTACTTACCATGGGAACCAATGGCACTCTACG\nAATCATGCTCACAGCTGAGCAACGGTGCTGCTCACCAATTACATATGAGCTCGTGGATTTAGCGTTGGAGCGGAACGATG\nAATTTCCATCTGTTCGCGCGCATCCACTAATCCAATATACGGTTATCCCGAGCGCTACTAGTGTCTGACCGGGTTGGTAG\nCCGAACCCTTTTGCAAGCCGCGCTTAGTGGATGTTGAAGTGGGAGTGATAAGCTTAAGCCGCCACGTTCGGGGGGGACTC\nGTTTATATTGGTGCTGGAATTACGAACGGCGTGATTCGTAGTCGGCCCTAATCGGGCGCGACCGAACACATGTAGTACTG\nTCGAGGCGGTTTAAACCCCCACAGTAGGTACTCTATCAGCAGAATTATGCTAGAAAGTTTCACACACAACTTTCCGCATG\nAGGCTCATGCGGAGCGTCGCACTCCCAATGGCCAGTGCCGGTAGTCGATGTTTGGTCGGAACTTAGTTCCTTCGGAATAA\nCGAACCGGATTTAAAAGAGCCTCAGGAGAACCTAAACGAATCCGTACGCATCTTGCCCAAGGTTGCTGAGCCTCGTCGCC\nTTTCTCAGTTCCACCTACATTAATGCAATGCGTTCGAAGCTTGACCTGCAAACAGGAATCAAGTTCAGACAGAGTGCAAG\nAGTTTCGCAGATAATTGGGAGACGACCCACTTGGATATAGGTGCTTTTTGAGATGTGTGTACGACCGTCCTTTCGAGCAT\nACCTACGGGTTACAATTGCTCCGGTAAGTCAGGCACATAGAAAACATAGCCACTACTGAGGTGTATCAAGATTACCTCAT\nGTAGACTTGAAATACAGCACATCCGCTTTAAGCTTAACCGATGTAGAACAGCATTTTGGGCGGCGTTGACAGCGTGGCCC\nGCTCACCGGTTTGCTCCCTTCTCACCAAATAACCAATGAGCACGACTTTGGTGACTGGACTGCCAGATGACGGCTACAAC\nCCGTTTTTGGTTCCGAATTCCGCTCTAACTCAACTAACATCCATACTATATGCGCCAGGATATTCTCGCGGTTGGACCCC\nCCTGCCAATTCGGGTTAAAACCACTCCGCACCCCCATGTAGGGGAGCTGGGCCCGCATTACAATATGCGAATCGATCCCG\nCAGATGGACGCTCACAAAATTCAGTCCTTTCACGACTCCGCTCATATAGACGGTAGAAGGGATACTGAGGCTGTTAGATA\nGGACGTCGAGCATGGCGTAGACGAGCGCAACCGGGTCGAAGGCCCGCATTACCGTGACACCCAGTTGAAAGGATTTACAC\nTGCTTCATATCGATATTTACCACTTTGTAATTGGGAGCTCAAAGACCTAAGTCAACACGGACCATCATACAGGGTCGCCA\nGTAAATGAGAAGCGCTGTCTGTGCCATGGAGAAGCGCTGCTACAGCACACAACGAACAATCTGCATGTGAAGGAGGGTGC\nCTCTTTTGGGATGAGCCTACGGGGATGTGTATCCCATGCCCTGTAGGCAGTTGGGACTAGCGCCGAGCTAATCTAGTAAC\nTAAGGCGCCAGCCGCGGCTGTTTGCCGAAGTCGTGCTGACTGCTGTACAACGAAGGGCGAGCGTGTTAACATGCCTACAC\nGTTGACCTAGACTAGTCCAAGTTCTGAAAGTCCCATTAGGTCCGGGTAGTACAGTCCTCGGTTCCAGTCCCATCTTGTGC\nCGCCAAGGACAAGCGATCATCAAAATCTGACTGAGTAATTGAATCAGCTACCTCAGACCACATTCAGCTCTCGGTAAACA\nTGCGATGGCTTGTGGTTGCACCGTAAAAGGGGGAAGCCCATCCATCCTGTAACACCACAATCGCGCGTAGCTTAATAACG\nGCTCCACCATTAGAATTCGATCGAGAGACACTGGTTTCAAGAGCCTTCCCTTTTGCTTTAGTGGGCCAAATCGCAACCCT\nGCTCCCCTCCCTTACGCCTTATACACTTCAGTGCAAATTCATCGCGTTCGAGCGAACAACCTGGACTTCTGTTGTACGTA\nGTCCACGGGGGCTTTATTCATTATAGAAAGCCCCCTACTGTACACCGTTTATCATGGTTCACATCATGAGCTGATCACCT\nAGAGAGTCGTCATGCACATTCGCACTAACAAGGACATATGAGTAACCGGGAGAG`", ".", "replace", "(", "/[\\r\\n]+/gm", ",", "''", ")", ";", "const", "target", "=", "`cacactagccccgtcagcgacggtgcgcggccgctgccctgcagcgaatggggctaacac\ngcataaaacgcccgcataaccactcgagctacgggaattcactcaggctgttgcttcgac\ngtgtagtctcattacataatcataatacctccaagaccaacggctgctcatgactctctt\naccttgttagggacatttcggcactagggaagagctgaggactttgaaaacgtcgataaa\naccatcgcgggaactagctgcgttagaactccatattttacgggtcgcaagcttgaggtc\nctgtcccggcagctgcaagtgctacggcaggaggggatctacctaacgtgcagtaacgag\ncccctgcccgtaatgaggcgtactcgtctctaatcgtcagtaagttactatgtccgagga\ncgcctctacgagttgaactctggctaggcccacctgtccgcgccctgctcgggtacccca\ntctgcttatccaacttcacctcgccttacggaatctctggttgccagtcatccgatggtc\nattaagcagcgtggtacatcgtagccaatacttcagggcgccagccatattcccagccaa\ngcggctgcataattacagcgcctggcacgactaatcgatcccacaagcctggtagatgac\nccttagccctaaagcgccctctgacctatctgcacgtgatacttgattatttgtaatgag\ncggacagggtagatgactaatatacagggtcgtctaggtttgcacaatgcagacatcatc\ncgcgcaaggcccggacggctgtactcacacagctagctccatctccctcagcagcactaa\ngattcccacgtgaccagggcgacgggcctcagccaaacgtatccttgatatctacttaag\ntcaaggttgactccgaaccctatgggtcggtgccgttaacagggagtctatatctcggcg\nttccattgcttgtttcaaactcctgctataaggtgaaagcgctggagggcatagtttatg\ncccaaagttgcgcgtagatccgtcgggatatgtgctataataaggactgctcgaggtagg\ncggtaacggctcccgccttcagtaggcgcggaactcgaatcggagttacaggacttgacc\ngagtcatatccaagtttatgttacccgatcggatccggatgctcgtatctgcgacgaggt\ncggaagacggacgaaatacgattcaaccgcgcgaaccattagcatctaacctttagcctc\naatgggtgttaacgtggtgggctcactcggcgtactctttgtgcaactattccgtatgaa\ncaacagtcaagttgcgacatgatgctcttacgtgattcccacagtttcccacctcaggat\ngctttctttagctaaacccaatagttatggcggcaccttcagactcccacgaggacggct\natgacgttgctaaaccattcgccgccaaaggctagcgctaacgagttctgtgagtttgtt\nccgggccagatctccaggatggtcgcaacaacgcagtaccggttttatactggtgaccct\nctacctgttattaagttacagcgttgtcctacgtacatggtcgtgagtactcgcgtagtc\naaacgccaggactagcagcgagaattattgtcgcgatacttactacaatacttacccgat\nattgacgtgcagggttgaaagagatggacagttgaatatctattttgacggaatcctcaa\naactccctccacctcaggtaacggccctgtccgggaccgcattcttgcatatattggttc\nccagagcgtatctaagttagtctcttgaccgttcaccgactctagggcgactcgttatcg\nccctccgaaacgatgctttcgttacctcaatgatgacaggctgtaacgtaagtgatccca\natctcactcgtgccttgtccaccgttccgtgaagacgaagcaatacgcggaatacgtggc\nttcgtaatattttgacgatatggggctgggacgctcaagacttccatgacaaacaaagtg\naagagcaactgcatccctcatcatgatcactattaccagagtagcgatggataacgctaa\ntttggtcagggcagctatcgcatcccgcaggtgtaggcggagactttttcttttgttgcg\nagttgacaggtaatctcacggtataagcacggttatttacgcaagcgacgtccctgggag\naatccgcccacgtaggaccccataatccataaatactgcggtcgaaaccttcatatcgtg\nacagaaccgctttctagggatgcggtccccgcattcagagttctactttggccagcgtga\ngacttaacaactccacttacgcggtacattgaagtcgttcagtccagtgtgacctgtgta\nccgaataacgtgtagaccagcgcgtctacgacttagcgcggctccactccaaagcacctt\nttgggactttccaacgagcctgttggccgttaagcggtatttcacaaatagatcacccta\ngtgtcggtaaccgactaccctattgggatcatcgtgagctcgaaacactagaggcggacc\naacggatgacatttgattcggctctacagagcttgtcgccagagaaaaactgtggcaatc\ntacgctcgcggggaattgactttagcggcccctagacaggtgtgggacactagtctagat\ntcacgtcctacacgacataacagcaccttcctggccagcccagaaatagtacctggacga\ncatccagccttccgacgccataatgtgagccgtagcgcccacgacgatcaacgaggagaa\natttacaaaggctgtgtgaatgctacgtcgtctaccattgctcatcgaaacgaacgcaac\ngcacagcatacaacgtttaccatgccggagcgggatcctcaagtacagaaaacagaggtc\ntaaacatgatccgaacaaatcggtaggtttacacagctacctcgtccattggcgtactgc\natcgatcgtgcttactacggtcatgccggcccgcgatgcacgtacgaaggaataccctgt\nctgcccccgcgcgagttacgctgtctcgcacataccgagcactgtcgttcgaagctaaac\ntatgagcccagccgagctccttatggccgcaacgctggtgcggccagctgataaattcca\ncagtacacgatcctcgtgtaagatctcgggcatagtaagtcatttcacatggttaggaga\ngatagaatacatggttctggtagctcaaccaggatttgtggaacccttggcccttggtga\ngtgctacaataaaattctccgtatgggacaaccaaagggtgctggatgtgacttcccggc\nccaggttagatgtccatatcattcatacattgcccgaccgacccaatgcctaaatcagag\ngcgccttagctagttcttgtagtgtgccacgtccggccacgcagacacgaccctcggcga\ngtgatcaccattaccggattggcatcgaagtctttttctgggaagttagccagtttggtg\ntgcggtgcttagaatcttattcccagtcaaacgcccctgggacgaattgctaaccctagt\ntgccacgccggaaccatcttcgggagagtagacaaatccgagttagatatgttagcgtct\ntcgtgagtctgaaatgtatcacttcaccgcagaatacgcgaatgtctgtttgccctggac\ntgacggaattggcttaaaagccgactagagcattttggtacggttcctatccgcgatgta\nattacctatctaggttatcgctagacgaatagcgagtacagtgtagcaggccctttgtta\ngcaagttgctctaaacagttgtcaaaacgtaggcacaatagtgcgattcttctaaatccg\nggaagctcatggcgctgggcagaaatatcacatacgggaataatcaacctccattttggt\ntcgttttactcgatgagtgccccttgcttgagacgagcgttctgagttgatggcatgtcg\naaaggtttacgcggtgagtagagcactttacccctacagatcggaatcctcgaggaggac\nagttggaacttcacattaacctttgttcgattgcatgaaggttgtgttctgggagtaggc\ntcccaaggtagcggttcatgctgggggcagccctaagtttgtattatgtgagtttgcgtc\ntgaaactacatttagcatgaggaacgtaagctttctggagggatcttctaaagccaggta\ntcgcccgctacgatgccggagccggtggttcacagctacctgtgctcaaaggcttaaggc\ntaatcatagcaacagtgcgaaaggacgtctttcagatttcgaaaggtgctgacacaacaa\ngggtcagggcggtcctacccttctgattccctacctggttttttagcaagggtcaaggct\naggcttatactcccgaacgctttaaacactatcccacccctgacggggggaagttgcgcg\nttaagtataagaataagatttaacagtacactttaggttcctcttccgcgagccgtcata\ncagcaccgagcgccgttgaaacgcgattaacgcgtattgtcgtgcgaaaaaaaaacgctc\ngccagcatattggagtgtcgacttgaaatattgaacaacaccgcatatcaaggacgaata\ngtagggcttcactacctccacctgacggccctaggacttatactcgaaaaagaccttcca\ntcacgatgtcccttaccggcgagagggctatatacgcatgaatagcagatcttgccgtcg\nctgagtgtcacccagggttgctccagaaaggagatagggcggagagccatcgacagcagc\ntctcgtctaggtggtagcagctaaggagtcgtgtcgtcgcgccgagttggaacattatcg\natgtacatcaatgcagtaatgatgctgatagactcgggagtttcctcaaacccagagtta\ncgagaagacgcaggtctatcagttagaaggagtcagtattggcctttgaaagatcttatg\nctcatgcccaatcgtagttaaacgcgaatcgggaaggccaatctggcggttttgaccccc\nggactcttaagacgtccaatgtggctagacataagtaacgaattactctataccgagggg\ncgggaaccggccaatttattacgagagcacgagagccttgtagcggccagcacactatcc\ntcgagtccctctatcctgagacgtagatatacatatacgcctagagagaatagccgtcta\nggcttccgtcgccctctccgtcgttcgcgtgaaccgtaagtcttccgcattcccttcctc\naagcgcgttggtgtgagagtggtattgaggcccagtcttataacgcatatacttgtgcac\ntctattacttaccatgggaaccaatggcactctcgaatcatgctcacagctgagcaacgg\ntgctgctcaccaattacatatgagtcgtggtttagcgttggagcggaagatgaatttcca\ntctgttcgcgcgcatcactaaccaatatacggttatcccagcgctatctagttctgaccg\nggttggtagcgaacccttttgcaagccggcttagtggatgtgaagtgggagtgataactt\naagccgccacgttcgggggggactcgtttatattggtgctggaatacgaacggcgtgatt\ncgtagtcgccctaatcgggcgcgacaacacatgtagtactgtcgaggcggtttaaaccca\ncagtaggtactctatcagcagaattatgctagaagtttcacaacaactttccgcatgagg\nctcagcggcagcgtcgcactcccaatggccagtgccggtagcgatgtttggtggaattag\nttccttcggaatacgaaccggatttaaagagcctcggagaacctaaacgaatccgtacgc\natcttgcccaaggtgctgagccttgtcgcctttctcagttccacctacattaatgcaatg\ncgttcgaagctctgaccgcaaacaggaatcaagttcagacagagtgcaagagtttcgcaa\ntaattgggaacgacccacttgatataggtgcttttagagatgtgtgtacgaccgtccttc\ngagcatacctacgggttacaattgctccggtaagtcaaggcacatagaaaacatagccaa\nctgagagtgtatacaagattacctcatgtagactgaaatacacacatcgctttaagctct\ncaaccgatgtagaacagattttgggcggcgttgacagcgtgcccgctcaccggtttgctc\nccttctcaccaaataaccatgagacgactttggtgactggactgccagatgacgggctac\naaccgttttggttccgaattcgctctaactcaactaacatcatactatatgcgccaggat\nattctcgcggttggacccccctgccaattcgggttaaaaccactccccccatgtagggag\nctgccgcaattacaatatcgacgatcccagatggacgctcacaaaatatcagtcctttca\ncgatccgctcatatagacggatgaagggactgaggctgttagatagtgacgtcgagcatg\ngcgtagacgagcgcaaccgggtcgaggcccgcattaccgtgacacccagttgaaaggatt\ntacactgcttcattcgatatttaccactttgtatgaggagctcaacctaagtcaacacgg\naccatcatacaggtcgccagtaatgagaaggctgctgtgccatggagaagcgctgctaca\ngcacacaacgaacatcttgcaatgtgaaggagggtgctcttttgggatgagcctacgggg\natgtgtatccctgccctgtaggcagttgggacttagcgcgactatctagataactaaggc\ngccagccgcggctgtttgccgaagtcgtgctgatgctgtacaacgaagggcgagcgtgtt\naacatgctacacgttgacctagactagtccaagtctgaaagtcccaatttaggtcgggta\ngtacagtcctcggttccagtcccatgttgtgccgacaaggacaagcgatcatcaaatcga\nctgaaattgaatcagctacctcagaccacattcagctctcggtaacatgggaggcttgtg\ngttgcaccgtaaaagggggatagcccatccatcctgtaaacctacaatcgcgcgtagctt\naatacgctcacattagacattcgatcgagagacctggtttcaagagccttcccttttgct\nttagtgggccaaatcgcaaccctgctcccctcccttacgccttatacacttcagtgcaaa\nttcatgcgttcagcgaacaactggacttctgttgtacgtagtccacgggggcttattcat\ntatagaaagccccctactgtcaccgttatatggttcacacatgagctgatcacctagaga\ngtcgtcatgcacattcgcctaacaaggacatatgagtaaccgggaggg`", ".", "replace", "(", "/[\\r\\n]+/gm", ",", "''", ")", ";", "const", "cigar", "=", "`8M1D10M1I3M1I36M1I37M1I13M2I18M1I7M1I4M1D119M1I13M1I27M1I46M1I13M1D2M1D19M1I22M1\nD19M2I43M1I21M1I16M1I6M1I55M1I20M1I34M1I4M1D23M1I18M1D10M3I8M1I11M1I15M1I17M1I41\nM1I45M1I3M1I3M2I5M1I10M1I35M1I16M1I70M1I8M1I8M1D17M1I5M1I59M1I25M2I29M1I34M1I25M\n1I12M1I26M1D38M1D39M1I17M1I12M1I4M1I31M1I3M1I36M3I30M1I11M1I31M1I36M1I64M1I20M1I\n17M1I57M1I20M1I17M1I36M1I32M1I45M2I78M1I22M2I44M1I83M1I23M1I17M1D17M1I7M1I57M2D8\n1M1I38M1I12M1I2M1I5M1I55M1I8M1D28M1I90M1I32M1I6M1I28M1I33M2D18M1I49M1I30M1I21M1I\n59M1I14M1I5M1I66M1I21M1I8M1I35M1I15M1I23M1I47M1I7M1I35M1I51M1I32M1I54M1D5M1I15M1\nI30M1I12M1I16M1I12M1I13M1I4M1I10M1D13M1I36M1I4M1I11M1I3M1D43M1D49M1I10M1I3M1I16M\n1I28M1I81M1I13M1I72M1I21M1I3M1I31M1D3M1I17M2I7M1I10M1I10M1I3M1D18M1I15M1I10M1I73\nM1I4M1I15M1D15M1D12M1D18M1I91M2I26M1I4M1I20M1I65M1I24M1I20M2D6M1I10M1I60M3I6M1I1\n3M1I3M1I20M1I24M1I28M1I31M1I61M1I3M1I25M1I100M1I6M1I69M1D99M1I51M1I7M1D35M1I14M1\nI22M1I11M1I25M1I26M1I7M2I12M1I67M1I14M1I7M2I16M1I50M1I10M1D9M1D48M1I12M1I15M1I15\nM1D3M1I6M1I6M1I8M1I3M1I30M1I17M1I15M1I20M1D21M1I55M1I51M1I6M1I18M1I27M1I6M1I18M1\nI7M1D5M1I17M1I19M1I12M1I17M1I47M1I23M1I18M2I31M2I36M1I10M1I22M1I4M1D32M1I11M1I4M\n1I16M1I13M1I10M1I38M1I58M1D5M1I42M1I10M1I11M1I37M1I39M1D22M2I6M1D6M1D20M1I9M1I5M\n1I9M2D19M1I23M1I38M1I5M1I30M1D10M2I16M1I20M1I65M4I10M1I8M3I4M1D10M1I3M2I6M2I20M1\nD15M1I25M2I18M1D37M1I49M1I20M2I2M1D8M3I27M1I10M1I9M1I4M1I46M1D15M1I35M1I21M1D5M1\nI3M1I2M1I6M1D43M1I33M1I27M1I13M2D6M1I59M1I5M1I6M2I39M1I9M1I28M1D43M2I5M2I8M1D15M\n1I92M1I6M1I9M1I32M1I28M1I5M1I4M1I10M1I39M1I30M`", ".", "replace", "(", "/[\\r\\n]+/gm", ",", "''", ")", ";", "expect", "(", "generateMD", "(", "target", ",", "query", ",", "cigar", ")", ")", ".", "toBe", "(", "'8^C128^A218^C2^G41^A218^C31T9^T10G0C293^C232^G38^A46C1G176A2G1C308A19C99C1G0T0A161^T81^TC4G196^T217^AG590^G117^G67^G43^G327^C21C28^C94A40^T15^A12^G112T155^AC0T75C301G86^G93G63^G169C70G75^T9^G48G41^T59C48^G209^T261^C134T47^C83A60^A28^A6^A43^CT2C112^G10G122^A39^A32A0T24^T108^A98T0C0T3^A71^T16^A116^AT37G8A74G30^T18A0C1T21C4A7^C268G1'", ")", ";", "}", ")", ";", "test", "(", "'getNextRefPos basic'", ",", "(", ")", "=>", "{", "const", "cigar", "=", "'10S10M1I4M1D15M'", ";", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "const", "iter", "=", "getNextRefPos", "(", "cigarOps", ",", "[", "5", ",", "10", ",", "15", ",", "20", ",", "25", ",", "30", ",", "35", "]", ")", ";", "const", "[", "...", "vals", "]", "=", "iter", ";", "expect", "(", "vals", ")", ".", "toEqual", "(", "[", "-", "5", ",", "0", ",", "5", ",", "10", ",", "14", ",", "20", ",", "25", "]", ")", ";", "}", ")", ";", "test", "(", "'getNextRefPos with many indels'", ",", "(", ")", "=>", "{", "const", "cigar", "=", "'10S4M1D1IM10'", ";", "const", "cigarOps", "=", "parseCigar", "(", "cigar", ")", ";", "const", "iter", "=", "getNextRefPos", "(", "cigarOps", ",", "[", "5", ",", "10", ",", "15", "]", ")", ";", "const", "[", "...", "vals", "]", "=", "iter", ";", "expect", "(", "vals", ")", ".", "toEqual", "(", "[", "-", "5", ",", "0", ",", "5", "]", ")", ";", "}", ")", ";", "test", "(", "'getModificationPositions'", ",", "(", ")", "=>", "{", "const", "positions", "=", "getModificationPositions", "(", "'C+m,2,2,1,4,1'", ",", "'AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA'", ",", "1", ")", ";", "expect", "(", "positions", "[", "0", "]", ")", ".", "toEqual", "(", "{", "type", ":", "'m'", ",", "positions", ":", "[", "6", ",", "17", ",", "20", ",", "31", ",", "34", "]", "}", ")", ";", "}", ")", ";", "test", "(", "'getModificationPositions with unknown (?)'", ",", "(", ")", "=>", "{", "const", "positions", "=", "getModificationPositions", "(", "'C+m?,2,2,1,4,1'", ",", "'AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA'", ",", "1", ")", ";", "expect", "(", "positions", "[", "0", "]", ")", ".", "toEqual", "(", "{", "type", ":", "'m'", ",", "positions", ":", "[", "6", ",", "17", ",", "20", ",", "31", ",", "34", "]", "}", ")", ";", "}", ")", ";", "test", "(", "'getModificationPositions with unknown (.)'", ",", "(", ")", "=>", "{", "const", "positions", "=", "getModificationPositions", "(", "'C+m.,2,2,1,4,1'", ",", "'AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA'", ",", "1", ")", ";", "expect", "(", "positions", "[", "0", "]", ")", ".", "toEqual", "(", "{", "type", ":", "'m'", ",", "positions", ":", "[", "6", ",", "17", ",", "20", ",", "31", ",", "34", "]", "}", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 23109, null, 23109, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 5, null, null, null, null, null, null, null, 95, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 5, null, null, null, null, null, null, null, 95, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660159
[ "import", "{", "GenericFilehandle", "}", "from", "'generic-filehandle'", ";", "import", "{", "Observable", "}", "from", "'rxjs'", ";", "import", "SimpleFeature", "from", "'@jbrowse/core/util/simpleFeature'", ";", "import", "{", "BaseFeatureDataAdapter", "}", "from", "'@jbrowse/core/data_adapters/BaseAdapter'", ";", "import", "{", "ConfigurationSchema", "}", "from", "'@jbrowse/core/configuration/configurationSchema'", ";", "export", "function", "parseSmallFasta", "(", "text", ")", "{", "return", "text", ".", "split", "(", "'>'", ")", ".", "filter", "(", "t", "=>", "/\\S/", ".", "test", "(", "t", ")", ")", ".", "map", "(", "entryText", "=>", "{", "const", "[", "defLine", ",", "...", "seqLines", "]", "=", "entryText", ".", "split", "(", "'\\n'", ")", ";", "const", "[", "id", ",", "...", "descriptionLines", "]", "=", "defLine", ".", "split", "(", "' '", ")", ";", "const", "description", "=", "descriptionLines", ".", "join", "(", "' '", ")", ";", "const", "sequence", "=", "seqLines", ".", "join", "(", "''", ")", ".", "replace", "(", "/\\s/g", ",", "''", ")", ";", "return", "{", "id", ",", "description", ",", "sequence", "}", ";", "}", ")", ";", "}", "type", "FileHandle", "=", "GenericFilehandle", ";", "export", "class", "FetchableSmallFasta", "{", "data", ":", "Promise", "<", "ReturnType", "<", "typeof", "parseSmallFasta", ">", ">", ";", "constructor", "(", "filehandle", ")", "{", "this", ".", "data", "=", "filehandle", ".", "readFile", "(", ")", ".", "then", "(", "buffer", "=>", "{", "const", "text", "=", "buffer", ".", "toString", "(", "'utf8'", ")", ";", "return", "parseSmallFasta", "(", "text", ")", ";", "}", ")", ";", "}", "async", "fetch", "(", "id", ",", "start", ",", "end", ")", "{", "const", "data", "=", "await", "this", ".", "data", ";", "const", "entry", "=", "data", "[", "id", "]", ";", "const", "length", "=", "end", "-", "start", "+", "1", ";", "if", "(", "!", "entry", ")", "{", "throw", "new", "Error", "(", "`no sequence with id ${", "id", "} exists`", ")", ";", "}", "return", "entry", ".", "sequence", ".", "substr", "(", "start", "-", "1", ",", "length", ")", ";", "}", "async", "getSequenceList", "(", ")", "{", "const", "data", "=", "await", "this", ".", "data", ";", "return", "data", ".", "map", "(", "entry", "=>", "entry", ".", "id", ")", ";", "}", "}", "export", "class", "SequenceAdapter", "extends", "BaseFeatureDataAdapter", "{", "fasta", ":", "FetchableSmallFasta", ";", "refNames", ":", "string", "[", "]", "=", "[", "]", ";", "constructor", "(", "filehandle", ")", "{", "super", "(", "ConfigurationSchema", "(", "'empty'", ",", "{", "}", ")", ".", "create", "(", ")", ")", ";", "this", ".", "fasta", "=", "new", "FetchableSmallFasta", "(", "filehandle", ")", ";", "}", "async", "getRefNames", "(", ")", "{", "return", "this", ".", "refNames", ";", "}", "getFeatures", "(", "{", "refName", ",", "start", ",", "end", ",", "}", ")", "{", "return", "new", "Observable", "(", "observer", "=>", "{", "this", ".", "fasta", ".", "getSequenceList", "(", ")", ".", "then", "(", "refNames", "=>", "{", "this", ".", "refNames", "=", "refNames", ";", "}", ")", ".", "then", "(", "(", ")", "=>", "this", ".", "fasta", ".", "fetch", "(", "this", ".", "refNames", ".", "indexOf", "(", "refName", ")", ",", "start", ",", "end", ")", ")", ".", "then", "(", "ret", "=>", "{", "observer", ".", "next", "(", "new", "SimpleFeature", "(", "{", "uniqueId", ":", "`${", "refName", "}-${", "start", "}-${", "end", "}`", ",", "seq", ":", "ret", ",", "start", ",", "end", ",", "}", ")", ")", ";", "observer", ".", "complete", "(", ")", ";", "}", ")", ";", "return", "{", "unsubscribe", ":", "(", ")", "=>", "{", "}", "}", ";", "}", ")", ";", "}", "freeResources", "(", ")", "{", "}", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7003, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 12, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 3, null, 3, null, 3, null, null, null, 5, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7003, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, 18, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660160
[ "import", "{", "toArray", "}", "from", "'rxjs/operators'", ";", "import", "{", "LocalFile", "}", "from", "'generic-filehandle'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "{", "getSubAdapterType", "}", "from", "'@jbrowse/core/data_adapters/dataAdapterCache'", ";", "import", "Adapter", "from", "'./CramAdapter'", ";", "import", "{", "SequenceAdapter", "}", "from", "'./CramTestAdapters'", ";", "import", "configSchemaF", "from", "'./configSchema'", ";", "const", "pluginManager", "=", "new", "PluginManager", "(", ")", ";", "const", "configSchema", "=", "pluginManager", ".", "load", "(", "configSchemaF", ")", ";", "const", "getVolvoxSequenceSubAdapter", "=", "async", "(", ")", "=>", "{", "return", "{", "dataAdapter", ":", "new", "SequenceAdapter", "(", "new", "LocalFile", "(", "require", ".", "resolve", "(", "'../../test_data/volvox.fa'", ")", ")", ")", ",", "sessionIds", ":", "new", "Set", "(", ")", ",", "}", ";", "}", ";", "test", "(", "'adapter can fetch features from volvox-sorted.cram'", ",", "async", "(", ")", "=>", "{", "const", "adapter", "=", "new", "Adapter", "(", "configSchema", ".", "create", "(", "{", "cramLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.cram'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "craiLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.cram.crai'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "}", ")", ",", "getVolvoxSequenceSubAdapter", ",", "pluginManager", ")", ";", "const", "features", "=", "adapter", ".", "getFeatures", "(", "{", "assemblyName", ":", "'volvox'", ",", "refName", ":", "'ctgA'", ",", "start", ":", "0", ",", "end", ":", "20000", ",", "}", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "expect", "(", "featuresArray", "[", "0", "]", ".", "get", "(", "'refName'", ")", ")", ".", "toBe", "(", "'ctgA'", ")", ";", "const", "featuresJsonArray", "=", "featuresArray", ".", "map", "(", "f", "=>", "f", ".", "toJSON", "(", ")", ")", ";", "expect", "(", "featuresJsonArray", ".", "length", ")", ".", "toEqual", "(", "3809", ")", ";", "expect", "(", "featuresJsonArray", ".", "slice", "(", "1000", ",", "1010", ")", ")", ".", "toMatchSnapshot", "(", ")", ";", "expect", "(", "adapter", ".", "refIdToName", "(", "0", ")", ")", ".", "toBe", "(", "'ctgA'", ")", ";", "expect", "(", "adapter", ".", "refIdToName", "(", "1", ")", ")", ".", "toBe", "(", "undefined", ")", ";", "expect", "(", "await", "adapter", ".", "hasDataForRefName", "(", "'ctgA'", ")", ")", ".", "toBe", "(", "true", ")", ";", "}", ")", ";", "test", "(", "'test usage of cramSlightlyLazyFeature toJSON (used in the widget)'", ",", "async", "(", ")", "=>", "{", "const", "adapter", "=", "new", "Adapter", "(", "configSchema", ".", "create", "(", "{", "cramLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.cram'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "craiLocation", ":", "{", "localPath", ":", "require", ".", "resolve", "(", "'../../test_data/volvox-sorted.cram.crai'", ")", ",", "locationType", ":", "'LocalPathLocation'", ",", "}", ",", "}", ")", ",", "getVolvoxSequenceSubAdapter", ",", "pluginManager", ")", ";", "const", "features", "=", "adapter", ".", "getFeatures", "(", "{", "assemblyName", ":", "'volvox'", ",", "refName", ":", "'ctgA'", ",", "start", ":", "0", ",", "end", ":", "100", ",", "}", ")", ";", "const", "featuresArray", "=", "await", "features", ".", "pipe", "(", "toArray", "(", ")", ")", ".", "toPromise", "(", ")", ";", "const", "f", "=", "featuresArray", "[", "0", "]", ".", "toJSON", "(", ")", ";", "expect", "(", "f", ".", "refName", ")", ".", "toBe", "(", "'ctgA'", ")", ";", "expect", "(", "f", ".", "start", ")", ".", "toBe", "(", "2", ")", ";", "expect", "(", "f", ".", "end", ")", ".", "toBe", "(", "102", ")", ";", "expect", "(", "f", ".", "mismatches", ")", ".", "toEqual", "(", "undefined", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 42494, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660161
[ "import", "Plugin", "from", "'@jbrowse/core/Plugin'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "BoxRendererType", "from", "'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'", ";", "import", "{", "svgFeatureRendererConfigSchema", ",", "SvgFeatureRendererReactComponent", ",", "}", "from", "'@jbrowse/plugin-svg'", ";", "import", "PileupRenderer", "from", "'../../PileupRenderer'", ";", "import", "SNPCoverageRenderer", "from", "'../../SNPCoverageRenderer'", ";", "import", "LinearPileupDisplay", "from", "'../../LinearPileupDisplay'", ";", "import", "LinearSNPCoverageDisplay", "from", "'../../LinearSNPCoverageDisplay'", ";", "import", "configSchemaFactory", "from", "'./configSchema'", ";", "beforeEach", "(", "(", ")", "=>", "{", "jest", ".", "spyOn", "(", "console", ",", "'warn'", ")", ".", "mockImplementation", "(", "(", ")", "=>", "{", "}", ")", ";", "}", ")", ";", "afterEach", "(", "(", ")", "=>", "{", "console", ".", "warn", ".", "mockRestore", "(", ")", ";", "}", ")", ";", "class", "AlignmentsPlugin", "extends", "Plugin", "{", "install", "(", "pluginManager", ")", "{", "PileupRenderer", "(", "pluginManager", ")", ";", "pluginManager", ".", "addRendererType", "(", "(", ")", "=>", "new", "BoxRendererType", "(", "{", "name", ":", "'SvgFeatureRenderer'", ",", "ReactComponent", ":", "SvgFeatureRendererReactComponent", ",", "configSchema", ":", "svgFeatureRendererConfigSchema", ",", "pluginManager", ",", "}", ")", ")", ";", "SNPCoverageRenderer", "(", "pluginManager", ")", ";", "LinearPileupDisplay", "(", "pluginManager", ")", ";", "LinearSNPCoverageDisplay", "(", "pluginManager", ")", ";", "}", "}", "test", "(", "'has a type attr'", ",", "(", ")", "=>", "{", "const", "configSchema", "=", "configSchemaFactory", "(", "new", "PluginManager", "(", "[", "new", "AlignmentsPlugin", "(", ")", "]", ")", ".", "createPluggableElements", "(", ")", ".", "configure", "(", ")", ")", ";", "const", "config", "=", "configSchema", ".", "create", "(", "{", "type", ":", "'LinearAlignmentsDisplay'", ",", "displayId", ":", "'display0'", ",", "name", ":", "'Zonker Display'", ",", "}", ")", ";", "expect", "(", "config", ".", "type", ")", ".", "toEqual", "(", "'LinearAlignmentsDisplay'", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660162
[ "import", "Plugin", "from", "'@jbrowse/core/Plugin'", ";", "import", "PluginManager", "from", "'@jbrowse/core/PluginManager'", ";", "import", "SNPCoverageRenderer", "from", "'../../SNPCoverageRenderer'", ";", "import", "configSchemaFactory", "from", "'./configSchema'", ";", "beforeEach", "(", "(", ")", "=>", "{", "jest", ".", "spyOn", "(", "console", ",", "'warn'", ")", ".", "mockImplementation", "(", "(", ")", "=>", "{", "}", ")", ";", "}", ")", ";", "afterEach", "(", "(", ")", "=>", "{", "console", ".", "warn", ".", "mockRestore", "(", ")", ";", "}", ")", ";", "class", "SNPCoverageRendererPlugin", "extends", "Plugin", "{", "install", "(", "pluginManager", ")", "{", "SNPCoverageRenderer", "(", "pluginManager", ")", ";", "}", "}", "test", "(", "'has a type attr'", ",", "(", ")", "=>", "{", "const", "configSchema", "=", "configSchemaFactory", "(", "new", "PluginManager", "(", "[", "new", "SNPCoverageRendererPlugin", "(", ")", "]", ")", ".", "createPluggableElements", "(", ")", ".", "configure", "(", ")", ")", ";", "const", "config", "=", "configSchema", ".", "create", "(", "{", "type", ":", "'LinearSNPCoverageDisplay'", ",", "displayId", ":", "'display1'", ",", "name", ":", "'SNPZonker Display'", ",", "}", ")", ";", "expect", "(", "config", ".", "type", ")", ".", "toEqual", "(", "'LinearSNPCoverageDisplay'", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660163
[ "import", "{", "createEditor", ",", "doc", ",", "h1", ",", "p", ",", "strong", "}", "from", "'jest-prosemirror'", ";", "import", "{", "Transaction", "}", "from", "'prosemirror-state'", ";", "import", "type", "{", "SuggestChangeHandler", "}", "from", "'../'", ";", "import", "{", "addSuggester", ",", "ChangeReason", ",", "ExitReason", ",", "suggest", "}", "from", "'../'", ";", "describe", "(", "'suggester'", ",", "(", ")", "=>", "{", "it", "(", "'should call `onChange`'", ",", "(", ")", "=>", "{", "const", "expected", "=", "'suggest'", ";", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "param", ")", "=>", "{", "const", "{", "exitReason", ",", "text", ":", "matchText", ",", "query", ":", "queryText", ",", "range", "}", "=", "param", ";", "if", "(", "exitReason", ")", "{", "exit", "(", "exitReason", ",", "matchText", ",", "queryText", ",", "range", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "matchOffset", ":", "0", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "insertText", "(", "`${", "expected", "} `", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "9", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledWith", "(", "ExitReason", ".", "MoveEnd", ",", "{", "full", ":", "'@suggest'", ",", "partial", ":", "'@suggest'", "}", ",", "{", "full", ":", "'suggest'", ",", "partial", ":", "'suggest'", "}", ",", "{", "from", ":", "1", ",", "cursor", ":", "9", ",", "to", ":", "9", "}", ")", ";", "}", ")", ";", "}", ")", ";", "it", "(", "'supports `textBefore` and `textAfter` `onChange`'", ",", "(", ")", "=>", "{", "const", "expected", "=", "'suggest'", ";", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "param", ")", "=>", "{", "const", "{", "exitReason", ",", "textBefore", ",", "textAfter", "}", "=", "param", ";", "if", "(", "exitReason", ")", "{", "exit", "(", "{", "textBefore", ",", "textAfter", "}", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "matchOffset", ":", "0", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'hello'", ")", ",", "p", "(", "strong", "(", "'Hello'", ")", ",", "' <cursor>friend'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "`@${", "expected", "} `", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "exit", ")", ".", "toHaveBeenCalledWith", "(", "{", "textBefore", ":", "'Hello '", ",", "textAfter", ":", "' friend'", "}", ")", ";", "}", ")", ";", "}", ")", ";", "it", "(", "'supports priority'", ",", "(", ")", "=>", "{", "const", "_1", "=", "jest", ".", "fn", "(", ")", ";", "const", "_2", "=", "jest", ".", "fn", "(", ")", ";", "const", "_3", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'3'", ",", "onChange", ":", "_3", ",", "supportedCharacters", ":", "/[1-3]+/", ",", "priority", ":", "10", "}", ",", "{", "char", ":", "'@'", ",", "name", ":", "'2'", ",", "onChange", ":", "_2", ",", "supportedCharacters", ":", "/[12]+/", ",", "priority", ":", "20", "}", ",", "{", "char", ":", "'@'", ",", "name", ":", "'1'", ",", "onChange", ":", "_1", ",", "supportedCharacters", ":", "/1+/", ",", "priority", ":", "30", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "_1", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "_2", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "expect", "(", "_3", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ".", "insertText", "(", "'1'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "_1", ")", ".", "toHaveBeenCalledTimes", "(", "2", ")", ";", "expect", "(", "_2", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "expect", "(", "_3", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ".", "insertText", "(", "'2'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "_1", ")", ".", "toHaveBeenCalledTimes", "(", "2", ")", ";", "expect", "(", "_2", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "_3", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ".", "insertText", "(", "'3'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "_1", ")", ".", "toHaveBeenCalledTimes", "(", "2", ")", ";", "expect", "(", "_2", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "_3", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "insertText", "(", "' '", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "_3", ")", ".", "toHaveBeenCalledTimes", "(", "2", ")", ";", "expect", "(", "_3", ")", ".", "toHaveBeenCalledWith", "(", "expect", ".", "objectContaining", "(", "{", "exitReason", ":", "ExitReason", ".", "MoveEnd", ",", "text", ":", "{", "full", ":", "'@123'", ",", "partial", ":", "'@123'", "}", ",", "query", ":", "{", "full", ":", "'123'", ",", "partial", ":", "'123'", "}", ",", "range", ":", "{", "from", ":", "1", ",", "cursor", ":", "5", ",", "to", ":", "5", "}", ",", "}", ")", ",", "expect", ".", "any", "(", "Transaction", ")", ")", ";", "}", ")", ";", "}", ")", ";", "it", "(", "'supports regex for character matches'", ",", "(", ")", "=>", "{", "const", "expected", "=", "'suggest'", ";", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "param", ")", "=>", "{", "const", "{", "exitReason", ",", "text", ":", "matchText", ",", "query", ":", "queryText", ",", "range", "}", "=", "param", ";", "if", "(", "exitReason", ")", "{", "exit", "(", "exitReason", ",", "matchText", ",", "queryText", ",", "range", ")", ";", "}", "}", ")", ";", "const", "at", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ":", "at", ",", "matchOffset", ":", "0", "}", ",", "{", "name", ":", "'whitespace'", ",", "char", ":", "/\\s/", ",", "onChange", ",", "supportedCharacters", ":", "/[A-Za-z]+/", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "' '", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "insertText", "(", "`${", "expected", "}_`", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "9", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledWith", "(", "ExitReason", ".", "MoveEnd", ",", "{", "full", ":", "' suggest'", ",", "partial", ":", "' suggest'", "}", ",", "{", "full", ":", "'suggest'", ",", "partial", ":", "'suggest'", "}", ",", "{", "from", ":", "1", ",", "cursor", ":", "9", ",", "to", ":", "9", "}", ")", ";", "}", ")", ";", "}", ")", ";", "it", "(", "'should not call `onChange` for the activation character when matchOffset is greater than 0'", ",", "(", ")", "=>", "{", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "exit", "(", "exitReason", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "matchOffset", ":", "1", "}", ",", "{", "char", ":", "'#'", ",", "name", ":", "'tags'", ",", "onChange", ",", "matchOffset", ":", "2", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@ #a '", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "editor", ".", "insertText", "(", "'@a #ab '", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledTimes", "(", "2", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledWith", "(", "ExitReason", ".", "MoveEnd", ")", ";", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "}", ")", ";", "it", "(", "'responds to different kinds of exits'", ",", "(", ")", "=>", "{", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "range", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "exit", "(", "exitReason", ",", "range", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "onChange", ",", "name", ":", "'at'", ",", "matchOffset", ":", "0", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@abc'", ")", ".", "selectText", "(", "3", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "5", ")", ";", "expect", "(", "onChange", ")", ".", "toHaveBeenLastCalledWith", "(", "expect", ".", "objectContaining", "(", "{", "changeReason", ":", "ChangeReason", ".", "Move", "}", ")", ",", "expect", ".", "any", "(", "Transaction", ")", ")", ";", "expect", "(", "exit", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ".", "insertText", "(", "' '", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "exit", ")", ".", "toHaveBeenCalledWith", "(", "ExitReason", ".", "Split", ",", "{", "from", ":", "1", ",", "cursor", ":", "3", ",", "to", ":", "3", "}", ")", ";", "}", ")", ".", "insertText", "(", "'@'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenLastCalledWith", "(", "expect", ".", "objectContaining", "(", "{", "range", ":", "{", "from", ":", "4", ",", "cursor", ":", "5", ",", "to", ":", "7", "}", ",", "changeReason", ":", "ChangeReason", ".", "Start", ",", "}", ")", ",", "expect", ".", "any", "(", "Transaction", ")", ")", ";", "}", ")", ";", "editor", ".", "overwrite", "(", "doc", "(", "p", "(", "'Hello '", ")", ")", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenLastCalledWith", "(", "ExitReason", ".", "InvalidSplit", ",", "{", "from", ":", "4", ",", "cursor", ":", "5", ",", "to", ":", "7", "}", ")", ";", "editor", ".", "insertText", "(", "'@abc'", ")", ".", "selectText", "(", "'start'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "exit", ")", ".", "toHaveBeenLastCalledWith", "(", "ExitReason", ".", "MoveStart", ",", "{", "from", ":", "7", ",", "cursor", ":", "11", ",", "to", ":", "11", ",", "}", ")", ";", "}", ")", ";", "}", ")", ";", "it", "(", "'calls the correct handlers when jumping between two suggesters'", ",", "(", ")", "=>", "{", "const", "change1", "=", "jest", ".", "fn", "(", ")", ";", "const", "exit1", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange1", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "changeReason", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "exit1", "(", "exitReason", ")", ";", "}", "else", "{", "change1", "(", "changeReason", ")", ";", "}", "}", ")", ";", "const", "change2", "=", "jest", ".", "fn", "(", ")", ";", "const", "exit2", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange2", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "changeReason", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "exit2", "(", "exitReason", ")", ";", "}", "else", "{", "change2", "(", "changeReason", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ":", "onChange1", "}", ",", "{", "char", ":", "'#'", ",", "name", ":", "'hash'", ",", "onChange", ":", "onChange2", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@abc #xyz'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "change1", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "expect", "(", "exit1", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "change2", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "jest", ".", "clearAllMocks", "(", ")", ";", "}", ")", ".", "selectText", "(", "5", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "change1", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "exit1", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "expect", "(", "exit2", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "change2", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "}", ")", ";", "}", ")", ";", "describe", "(", "'Suggest Ignore'", ",", "(", ")", "=>", "{", "it", "(", "'should ignore matches when called'", ",", "(", ")", "=>", "{", "const", "change", "=", "jest", ".", "fn", "(", ")", ";", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "range", ",", "addIgnored", ",", "suggester", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "addIgnored", "(", "{", "from", ":", "range", ".", "from", ",", "name", ":", "suggester", ".", "name", "}", ")", ";", "exit", "(", "exitReason", ",", "range", ")", ";", "}", "else", "{", "change", "(", "range", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "ignoredClassName", ":", "'ignored'", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@abc '", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "exit", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "change", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "jest", ".", "clearAllMocks", "(", ")", ";", "}", ")", ".", "backspace", "(", "4", ")", ".", "callback", "(", "(", ")", "=>", "expect", "(", "change", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ")", ";", "expect", "(", "editor", ".", "view", ".", "dom", ".", "innerHTML", ")", ".", "toMatchInlineSnapshot", "(", "`\n <p>\n <span class=\"ignored\">\n @\n </span>\n </p>\n `", ")", ";", "}", ")", ";", "it", "(", "'should clear ignored'", ",", "(", ")", "=>", "{", "const", "clear", "=", "{", "at", ":", "(", "_name", "?", ")", "=>", "{", "}", ",", "tag", ":", "(", "_name", "?", ")", "=>", "{", "}", ",", "}", ";", "const", "exitAt", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChangeAt", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "range", ",", "addIgnored", ",", "suggester", ",", "clearIgnored", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "const", "{", "name", "}", "=", "suggester", ";", "addIgnored", "(", "{", "from", ":", "range", ".", "from", ",", "name", "}", ")", ";", "clear", ".", "at", "=", "clearIgnored", ";", "exitAt", "(", ")", ";", "}", "}", ")", ";", "const", "exitTag", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChangeTag", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "range", ",", "addIgnored", ",", "suggester", ",", "clearIgnored", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "const", "{", "name", "}", "=", "suggester", ";", "addIgnored", "(", "{", "from", ":", "range", ".", "from", ",", "name", "}", ")", ";", "clear", ".", "tag", "=", "clearIgnored", ";", "exitTag", "(", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ":", "onChangeAt", "}", ",", "{", "char", ":", "'#'", ",", "name", ":", "'tag'", ",", "onChange", ":", "onChangeTag", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'@abc #xyz '", ")", ".", "callback", "(", "(", ")", "=>", "{", "jest", ".", "clearAllMocks", "(", ")", ";", "}", ")", ".", "selectText", "(", "2", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChangeAt", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "clear", ".", "at", "(", "'at'", ")", ";", "}", ")", ".", "selectText", "(", "3", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChangeAt", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "selectText", "(", "7", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChangeTag", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "clear", ".", "tag", "(", "'tag'", ")", ";", "}", ")", ".", "selectText", "(", "8", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChangeTag", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "selectText", "(", "'end'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "exitAt", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "expect", "(", "exitTag", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ";", "}", ")", ";", "}", ")", ";", "test", "(", "'addSuggester'", ",", "(", ")", "=>", "{", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "{", "exitReason", ",", "range", "}", ")", "=>", "{", "if", "(", "exitReason", ")", "{", "exit", "(", "exitReason", ",", "range", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ";", "const", "remove", "=", "addSuggester", "(", "editor", ".", "view", ".", "state", ",", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "matchOffset", ":", "0", ",", "}", ")", ";", "editor", ".", "insertText", "(", "'@'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "insertText", "(", "'suggest '", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "remove", "(", ")", ";", "jest", ".", "clearAllMocks", "(", ")", ";", "editor", ".", "insertText", "(", "'@'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ".", "insertText", "(", "'suggest '", ")", ";", "expect", "(", "exit", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "describe", "(", "'validity'", ",", "(", ")", "=>", "{", "it", "(", "'can register invalid marks'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "invalidMarks", ":", "[", "'strong'", "]", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@<cursor>'", ")", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'abc'", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'can register invalid nodes'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "invalidNodes", ":", "[", "'heading'", "]", "}", ")", ";", "createEditor", "(", "doc", "(", "h1", "(", "'@<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'abc'", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'can register valid marks'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "validMarks", ":", "[", "'strong'", "]", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@<cursor>'", ")", ")", ",", "p", "(", "''", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", ",", "}", ")", ".", "insertText", "(", "'abc '", ")", ";", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "jest", ".", "resetAllMocks", "(", ")", ";", "editor", ".", "selectText", "(", "8", ")", ".", "insertText", "(", "'@abc '", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'can register valid nodes'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "validNodes", ":", "[", "'heading'", "]", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "h1", "(", "'@<cursor>'", ")", ",", "p", "(", "''", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'abc '", ")", ";", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "jest", ".", "resetAllMocks", "(", ")", ";", "editor", ".", "selectText", "(", "8", ")", ".", "insertText", "(", "'@abc '", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'rejects `invalidMarks` option when covering part of the match'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "invalidMarks", ":", "[", "'strong'", "]", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@'", ")", ",", "'ab<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'c'", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'should reject `invalidMarks` option not at the start or cursor'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "invalidMarks", ":", "[", "'strong'", "]", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'@'", ",", "strong", "(", "'ab'", ")", ",", "'c<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'c'", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'accepts `validMarks` only when the whole match is covered'", ",", "(", ")", "=>", "{", "const", "onChange", "=", "jest", ".", "fn", "(", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "onChange", ",", "validMarks", ":", "[", "'strong'", "]", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@<cursor>'", ")", ")", ",", "p", "(", "'@a'", ",", "strong", "(", "'b'", ")", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", ",", "}", ")", ".", "insertText", "(", "'abc'", ")", ".", "selectText", "(", "10", ")", ";", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "4", ")", ";", "jest", ".", "resetAllMocks", "(", ")", ";", "editor", ".", "insertText", "(", "'c'", ")", ";", "expect", "(", "onChange", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "}", ")", ";", "test", "(", "'should support whitespace characters in `supportedCharacters`'", ",", "(", ")", "=>", "{", "const", "exit", "=", "jest", ".", "fn", "(", ")", ";", "const", "onChange", "=", "jest", ".", "fn", "(", "(", "param", ")", "=>", "{", "const", "{", "exitReason", ",", "text", ":", "matchText", ",", "query", ":", "queryText", ",", "range", "}", "=", "param", ";", "if", "(", "exitReason", ")", "{", "exit", "(", "exitReason", ",", "matchText", ",", "queryText", ",", "range", ")", ";", "}", "}", ")", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'/'", ",", "name", ":", "'at'", ",", "onChange", ",", "matchOffset", ":", "0", ",", "supportedCharacters", ":", "/[ a-z]+/", ",", "}", ")", ";", "createEditor", "(", "doc", "(", "p", "(", "'<cursor>'", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'/'", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ".", "insertText", "(", "` abc space ? `", ")", ".", "callback", "(", "(", ")", "=>", "{", "expect", "(", "onChange", ")", ".", "toHaveBeenCalledTimes", "(", "13", ")", ";", "expect", "(", "exit", ")", ".", "toHaveBeenCalledTimes", "(", "1", ")", ";", "}", ")", ";", "}", ")", ";", "describe", "(", "'checkNextValidSelection'", ",", "(", ")", "=>", "{", "it", "(", "'updates the next selection'", ",", "(", ")", "=>", "{", "const", "mocks", "=", "{", "checkNextValidSelection", ":", "jest", ".", "fn", "(", ")", ",", "onChange", ":", "jest", ".", "fn", "(", ")", ",", "}", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "invalidMarks", ":", "[", "'strong'", "]", ",", "...", "mocks", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@<cursor>'", ")", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'abc'", ")", ";", "expect", "(", "mocks", ".", "checkNextValidSelection", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "editor", ".", "insertText", "(", "' abcd'", ")", ".", "selectText", "(", "6", ")", ";", "expect", "(", "mocks", ".", "checkNextValidSelection", ")", ".", "toHaveBeenCalledWith", "(", "expect", ".", "objectContaining", "(", "{", "pos", ":", "7", "}", ")", ",", "expect", ".", "any", "(", "Transaction", ")", ",", "{", "change", ":", "undefined", ",", "exit", ":", "undefined", "}", ")", ";", "}", ")", ";", "it", "(", "'is not called when selecting `all`'", ",", "(", ")", "=>", "{", "const", "mocks", "=", "{", "checkNextValidSelection", ":", "jest", ".", "fn", "(", ")", ",", "onChange", ":", "jest", ".", "fn", "(", ")", ",", "}", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "invalidMarks", ":", "[", "'strong'", "]", ",", "...", "mocks", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@<cursor>'", ")", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'abc'", ")", ";", "expect", "(", "mocks", ".", "checkNextValidSelection", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "editor", ".", "insertText", "(", "' abcd'", ")", ".", "selectText", "(", "'all'", ")", ";", "expect", "(", "mocks", ".", "checkNextValidSelection", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "it", "(", "'is not called when selecting `node`'", ",", "(", ")", "=>", "{", "const", "mocks", "=", "{", "checkNextValidSelection", ":", "jest", ".", "fn", "(", ")", ",", "onChange", ":", "jest", ".", "fn", "(", ")", ",", "}", ";", "const", "plugin", "=", "suggest", "(", "{", "char", ":", "'@'", ",", "name", ":", "'at'", ",", "invalidMarks", ":", "[", "'strong'", "]", ",", "...", "mocks", "}", ")", ";", "const", "editor", "=", "createEditor", "(", "doc", "(", "p", "(", "strong", "(", "'@<cursor>'", ")", ")", ")", ",", "{", "plugins", ":", "[", "plugin", "]", "}", ")", ".", "insertText", "(", "'abc'", ")", ";", "expect", "(", "mocks", ".", "checkNextValidSelection", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "editor", ".", "insertText", "(", "' abcd'", ")", ".", "selectText", "(", "'all'", ")", ";", "expect", "(", "mocks", ".", "checkNextValidSelection", ")", ".", "not", ".", "toHaveBeenCalled", "(", ")", ";", "}", ")", ";", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 58, null, null, null, null, null, null, null, null, 20573, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660164
[ "import", "React", "from", "\"react\"", ";", "export", "default", "function", "ErrorFallback", "(", "{", "error", ",", "resetErrorBoundary", "}", ")", "{", "return", "(", "<", "div", "role", "=", "\"alert\"", ">", "<", "p", ">", "Something", "went", "wrong", ":", "<", "/p>", "<", "pre", ">", "{", "error", ".", "message", "}", "<", "/pre>", "<", "button", "onClick", "=", "{", "resetErrorBoundary", "}", ">", "Try", "again", "<", "/button>", "<", "/div>);", "}" ]
[ null, null, null, null, null, null, null, null, 9, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660165
[ "export", "const", "isRunningInElectron", "=", "(", ")", "=>", "{", "const", "userAgent", "=", "navigator", ".", "userAgent", ".", "toLowerCase", "(", ")", ";", "return", "(", "userAgent", ".", "indexOf", "(", "\" electron/\"", ")", ">", "-", "1", "&&", "userAgent", ".", "indexOf", "(", "\"cypress\"", ")", "===", "-", "1", ")", ";", "}", ";", "export", "const", "openInExplorer", "=", "(", "projectPath", ")", "=>", "{", "const", "{", "shell", "}", "=", "require", "(", "\"electron\"", ")", ";", "shell", ".", "openPath", "(", "projectPath", ")", ";", "}", ";" ]
[ null, null, 8, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660166
[ "import", "{", "captureException", "}", "from", "\"@sentry/react\"", ";", "import", "*", "as", "Sentry", "from", "\"@sentry/react\"", ";", "import", "{", "Integrations", "}", "from", "\"@sentry/tracing\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../../utils/electron\"", ";", "import", "{", "getItem", ",", "setItem", "}", "from", "\"../../../utils/storage\"", ";", "interface", "IConfigContextValue", "{", "config", ":", "IConfig", ";", "setConfig", ":", "(", "config", ":", "IConfig", ")", "=>", "void", ";", "changeConfigOption", ":", "<", "K", "extends", "keyof", "IConfig", ",", "V", "extends", "IConfig", "[", "K", "]", ">", "(", "key", ":", "K", ",", "value", ":", "V", ")", "=>", "void", ";", "}", "interface", "IConfigProviderProps", "{", "value", "?", ":", "IConfigContextValue", ";", "children", ":", "React", ".", "ReactNode", ";", "}", "let", "port", "=", "getItem", "(", "\"port\"", ")", "||", "window", ".", "location", ".", "port", "||", "5010", ";", "console", ".", "log", "(", "\"port:\"", ",", "port", ")", ";", "if", "(", "process", ".", "env", ".", "NODE_ENV", "!==", "\"production\"", ")", "{", "port", "=", "5010", ";", "}", "setItem", "(", "\"port\"", ",", "port", ")", ";", "const", "browserOnlyConfig", "=", "{", "port", ",", "enableTerminalTheme", ":", "Boolean", "(", "getItem", "(", "\"enableTerminalTheme\"", ")", ")", "||", "true", ",", "showStatusBar", ":", "Boolean", "(", "getItem", "(", "\"showStatusBar\"", ")", ")", "||", "true", ",", "taskViewStyle", ":", "(", "getItem", "(", "\"taskViewStyle\"", ")", "as", "TaskViewStyle", ")", "||", "\"tabs\"", ",", "shell", ":", "\"\"", ",", "sendErrorReports", ":", "false", ",", "}", ";", "export", "const", "ConfigContext", "=", "React", ".", "createContext", "<", "IConfigContextValue", "|", "undefined", ">", "(", "undefined", ")", ";", "function", "ConfigProvider", "(", "props", ")", "{", "const", "[", "config", ",", "setConfig", "]", "=", "React", ".", "useState", "(", "(", ")", "=>", "{", "try", "{", "if", "(", "isRunningInElectron", "(", ")", ")", "{", "const", "serverConfig", "=", "window", ".", "desktop", ".", "getAppConfig", "(", ")", ";", "console", ".", "log", "(", "\"serverConfig:\"", ",", "serverConfig", ")", ";", "if", "(", "serverConfig", ".", "sendErrorReports", ")", "{", "Sentry", ".", "init", "(", "{", "dsn", ":", "\"https://[email protected]/5418370\"", ",", "integrations", ":", "[", "new", "Integrations", ".", "BrowserTracing", "(", ")", "]", ",", "tracesSampleRate", ":", "1.0", ",", "beforeSend", "(", "event", ")", "{", "if", "(", "event", ".", "user", ")", "{", "delete", "event", ".", "user", ".", "email", ";", "delete", "event", ".", "user", ".", "ip_address", ";", "}", "return", "event", ";", "}", ",", "}", ")", ";", "}", "if", "(", "serverConfig", ")", "{", "return", "serverConfig", ";", "}", "return", "browserOnlyConfig", ";", "}", "else", "{", "return", "browserOnlyConfig", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "`Error getting config.`", ")", ";", "captureException", "(", "error", ")", ";", "return", "browserOnlyConfig", ";", "}", "}", ")", ";", "const", "changeConfigOption", "=", "React", ".", "useCallback", "(", "<", "K", "extends", "keyof", "IConfig", ",", "V", "extends", "IConfig", "[", "K", "]", ">", "(", "key", ",", "value", ")", "=>", "{", "const", "newConfig", "=", "{", "...", "config", ",", "[", "key", "]", ":", "value", ",", "}", ";", "setConfig", "(", "newConfig", ")", ";", "}", ",", "[", "config", ",", "setConfig", "]", ")", ";", "const", "value", "=", "React", ".", "useMemo", "(", "(", ")", "=>", "{", "return", "{", "config", ",", "setConfig", ",", "changeConfigOption", "}", ";", "}", ",", "[", "config", ",", "setConfig", ",", "changeConfigOption", "]", ")", ";", "return", "<", "ConfigContext", ".", "Provider", "value", "=", "{", "value", "}", "{", "...", "props", "}", "/>;", "}", "function", "useConfig", "(", ")", "{", "const", "context", "=", "React", ".", "useContext", "(", "ConfigContext", ")", ";", "if", "(", "!", "context", ")", "{", "throw", "new", "Error", "(", "\"useConfig must be used within a ConfigProvider\"", ")", ";", "}", "return", "context", ";", "}", "export", "{", "ConfigProvider", ",", "useConfig", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 31, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 37, null, 37, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 68, null, 215, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660167
[ "import", "localforage", "from", "\"localforage\"", ";", "import", "throttle", "from", "\"lodash/throttle\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "useMountedState", "}", "from", "\"../hooks\"", ";", "localforage", ".", "config", "(", "{", "name", ":", "\"ten-hands\"", ",", "}", ")", ";", "export", "enum", "ACTION_TYPES", "{", "UPDATE_JOB", ",", "CLEAR_OUTPUT", ",", "RESTORE_STATE_FROM_STORAGE", ",", "UPDATE_JOB_PROCESS", "}", "export", "const", "roomSocketState", "=", "{", "}", ";", "const", "initializeRoomSocketState", "=", "(", "state", ")", "=>", "{", "Object", ".", "keys", "(", "state", ")", ".", "forEach", "(", "(", "taskID", ")", "=>", "{", "roomSocketState", "[", "taskID", "]", "=", "false", ";", "}", ")", ";", "}", ";", "const", "updateData", "=", "throttle", "(", "async", "(", "data", ")", "=>", "{", "try", "{", "if", "(", "Object", ".", "keys", "(", "data", ")", ".", "length", ">", "0", ")", "{", "await", "localforage", ".", "setItem", "(", "\"state\"", ",", "data", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "}", "}", ",", "200", ")", ";", "export", "const", "initialState", "=", "{", "}", ";", "export", "const", "jobsReducer", "=", "(", "state", "=", "initialState", ",", "action", ")", ":", "Record", "<", "any", ",", "any", ">", "=>", "{", "switch", "(", "action", ".", "type", ")", "{", "case", "ACTION_TYPES", ".", "UPDATE_JOB", ":", "{", "const", "{", "taskID", ",", "stdout", ",", "isRunning", "}", "=", "action", ";", "const", "newStdout", "=", "state", "[", "taskID", "]", "?", "stdout", ":", "\"\"", ";", "return", "{", "...", "state", ",", "[", "taskID", "]", ":", "{", "...", "state", "[", "taskID", "]", ",", "stdout", ":", "newStdout", ",", "isRunning", ",", "}", ",", "}", ";", "}", "case", "ACTION_TYPES", ".", "UPDATE_JOB_PROCESS", ":", "{", "const", "{", "taskID", ",", "process", "}", "=", "action", ";", "const", "pid", "=", "process", "&&", "process", ".", "pid", "?", "process", ".", "pid", ":", "-", "1", ";", "const", "newState", "=", "{", "...", "state", ",", "[", "taskID", "]", ":", "{", "...", "state", "[", "taskID", "]", ",", "isRunning", ":", "pid", "===", "-", "1", "?", "false", ":", "true", ",", "process", ",", "}", ",", "}", ";", "updateData", "(", "newState", ")", ";", "return", "newState", ";", "}", "case", "ACTION_TYPES", ".", "CLEAR_OUTPUT", ":", "{", "const", "taskID", "=", "action", ".", "taskID", ";", "return", "{", "...", "state", ",", "[", "taskID", "]", ":", "{", "...", "state", "[", "taskID", "]", ",", "stdout", ":", "\"\"", ",", "}", ",", "}", ";", "}", "case", "ACTION_TYPES", ".", "RESTORE_STATE_FROM_STORAGE", ":", "{", "return", "action", ".", "state", "??", "state", ";", "}", "default", ":", "return", "state", ";", "}", "}", ";", "interface", "IJobsContextValue", "{", "state", ":", "Record", "<", "any", ",", "any", ">", ";", "dispatch", ":", "React", ".", "Dispatch", "<", "IJobAction", ">", ";", "runningTasks", ":", "Record", "<", "string", ",", "boolean", ">", ";", "isTaskRunning", ":", "(", "taskId", ":", "string", ")", "=>", "boolean", ";", "}", "interface", "IJobsProviderProps", "{", "value", "?", ":", "IJobsContextValue", ";", "children", ":", "React", ".", "ReactNode", ";", "}", "export", "const", "JobsContext", "=", "React", ".", "createContext", "<", "IJobsContextValue", "|", "undefined", ">", "(", "undefined", ")", ";", "function", "JobsProvider", "(", "props", ")", "{", "const", "isMounted", "=", "useMountedState", "(", ")", ";", "const", "[", "state", ",", "dispatch", "]", "=", "React", ".", "useReducer", "(", "jobsReducer", ",", "initialState", ")", ";", "const", "[", "runningTasks", ",", "setRunningTasks", "]", "=", "React", ".", "useState", "<", "any", ">", "(", "{", "}", ")", ";", "const", "isTaskRunning", "=", "React", ".", "useCallback", "(", "(", "taskId", ")", "=>", "{", "return", "runningTasks", "[", "taskId", "]", "===", "true", ";", "}", ",", "[", "runningTasks", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "const", "keys", "=", "Object", ".", "keys", "(", "state", ")", ";", "if", "(", "!", "keys", "||", "keys", ".", "length", "===", "0", ")", "{", "setRunningTasks", "(", "{", "}", ")", ";", "return", ";", "}", "const", "newTaskStatus", "=", "{", "}", ";", "keys", ".", "forEach", "(", "(", "key", ")", "=>", "{", "newTaskStatus", "[", "key", "]", "=", "(", "state", "[", "key", "]", "&&", "state", "[", "key", "]", ".", "isRunning", ")", "||", "false", ";", "}", ")", ";", "if", "(", "isMounted", "(", ")", ")", "{", "setRunningTasks", "(", "newTaskStatus", ")", ";", "}", "}", ",", "[", "state", ",", "isMounted", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "const", "restoreData", "=", "async", "(", ")", "=>", "{", "try", "{", "const", "storedState", "=", "await", "localforage", ".", "getItem", "(", "\"state\"", ")", ";", "if", "(", "storedState", ")", "{", "dispatch", "(", "{", "type", ":", "ACTION_TYPES", ".", "RESTORE_STATE_FROM_STORAGE", ",", "taskID", ":", "\"none\"", ",", "state", ":", "storedState", ",", "}", ")", ";", "initializeRoomSocketState", "(", "storedState", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "}", "}", ";", "restoreData", "(", ")", ";", "}", ",", "[", "]", ")", ";", "const", "value", "=", "React", ".", "useMemo", "(", "(", ")", "=>", "{", "return", "{", "state", ",", "dispatch", ",", "runningTasks", ",", "isTaskRunning", ",", "}", ";", "}", ",", "[", "state", ",", "dispatch", ",", "runningTasks", ",", "isTaskRunning", "]", ")", ";", "return", "<", "JobsContext", ".", "Provider", "value", "=", "{", "value", "}", "{", "...", "props", "}", "/>;", "}", "function", "useJobs", "(", ")", "{", "const", "context", "=", "React", ".", "useContext", "(", "JobsContext", ")", ";", "if", "(", "!", "context", ")", "{", "throw", "new", "Error", "(", "\"useJobs must be used within a JobsProvider\"", ")", ";", "}", "return", "context", ";", "}", "export", "{", "JobsProvider", ",", "useJobs", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, 17, null, null, 6, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 31, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 0, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660168
[ "import", "Axios", ",", "{", "AxiosError", ",", "AxiosResponse", "}", "from", "\"axios\"", ";", "export", "const", "getProjects", "=", "async", "(", "config", ")", ":", "Promise", "<", "IProject", "[", "]", ">", "=>", "{", "try", "{", "const", "response", "=", "await", "Axios", ".", "get", "(", "`http://localhost:${", "config", ".", "port", "}/projects`", ")", ";", "const", "projects", "=", "response", ".", "data", ";", "return", "projects", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"getProjects error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "saveProjectInDb", "=", "async", "(", "config", ",", "projectData", ")", ":", "Promise", "<", "IProject", ">", "=>", "{", "try", "{", "const", "responseData", "=", "await", "Axios", "(", "{", "method", ":", "\"post\"", ",", "baseURL", ":", "`http://localhost:${", "config", ".", "port", "}`", ",", "url", ":", "\"projects\"", ",", "data", ":", "projectData", ",", "}", ")", ";", "const", "newProject", "=", "responseData", ".", "data", ";", "return", "newProject", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"saveProjectInDb error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "renameProjectInDb", "=", "async", "(", "config", ",", "projectId", ",", "newName", ")", ":", "Promise", "<", "IProject", ">", "=>", "{", "try", "{", "const", "responseData", "=", "await", "Axios", "(", "{", "method", ":", "\"patch\"", ",", "url", ":", "`http://localhost:${", "config", ".", "port", "}/projects/${", "projectId", "}`", ",", "data", ":", "{", "name", ":", "newName", ",", "}", ",", "}", ")", ";", "const", "updatedProject", "=", "responseData", ".", "data", ";", "return", "updatedProject", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"renameProjectInDb error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "updateProjectInDb", "=", "async", "(", "config", ",", "projectId", ",", "newProjectData", ")", ":", "Promise", "<", "IProject", ">", "=>", "{", "try", "{", "const", "responseData", "=", "await", "Axios", "(", "{", "method", ":", "\"put\"", ",", "url", ":", "`http://localhost:${", "config", ".", "port", "}/projects/${", "projectId", "}`", ",", "data", ":", "newProjectData", ",", "}", ")", ";", "const", "updatedProject", "=", "responseData", ".", "data", ";", "return", "updatedProject", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"updateProjectInDb error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "deleteProjectInDb", "=", "async", "(", "config", ",", "projectId", ")", "=>", "{", "try", "{", "await", "Axios", ".", "delete", "(", "`http://localhost:${", "config", ".", "port", "}/projects/${", "projectId", "}`", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"deleteProjectInDb error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "deleteTaskInDb", "=", "async", "(", "config", ",", "projectId", ",", "taskId", ")", "=>", "{", "try", "{", "await", "Axios", ".", "delete", "(", "`http://localhost:${", "config", ".", "port", "}/projects/${", "projectId", "}/commands/${", "taskId", "}`", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"deleteTask error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "reorderTasksInDb", "=", "async", "(", "config", ",", "projectId", ",", "commands", ",", "taskSortOrder", "=", "\"name-asc\"", ")", "=>", "{", "try", "{", "await", "Axios", ".", "post", "(", "`http://localhost:${", "config", ".", "port", "}/projects/${", "projectId", "}/commands/reorder`", ",", "{", "commands", ",", "taskSortOrder", ",", "}", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"reorderTasks error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "saveTaskInDb", "=", "async", "(", "config", ",", "activeProjectId", ",", "newTask", ")", ":", "Promise", "<", "any", ">", "=>", "{", "try", "{", "const", "responseData", "=", "await", "Axios", "(", "{", "timeout", ":", "5000", ",", "method", ":", "\"post\"", ",", "baseURL", ":", "`http://localhost:${", "config", ".", "port", "}`", ",", "url", ":", "`projects/${", "activeProjectId", "}/commands`", ",", "data", ":", "newTask", ",", "}", ")", ";", "const", "updatedProject", "=", "responseData", ".", "data", ";", "return", "updatedProject", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"saveProjectInDb error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "updateTaskInDb", "=", "async", "(", "config", ",", "activeProjectId", ",", "taskId", ",", "newTask", ")", ":", "Promise", "<", "any", ">", "=>", "{", "try", "{", "const", "responseData", "=", "await", "Axios", "(", "{", "timeout", ":", "5000", ",", "method", ":", "\"put\"", ",", "baseURL", ":", "`http://localhost:${", "config", ".", "port", "}`", ",", "url", ":", "`projects/${", "activeProjectId", "}/commands/${", "taskId", "}`", ",", "data", ":", "newTask", ",", "}", ")", ";", "const", "updatedProject", "=", "responseData", ".", "data", ";", "return", "updatedProject", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"saveProjectInDb error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "reorderProjectsInDb", "=", "async", "(", "config", ",", "projectIds", ")", "=>", "{", "try", "{", "await", "Axios", ".", "post", "(", "`http://localhost:${", "config", ".", "port", "}/projects/reorder`", ",", "{", "projectIds", ",", "}", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"reorderProjects error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "checkIfValidPath", "=", "async", "(", "config", ",", "path", ")", "=>", "{", "try", "{", "const", "response", "=", "await", "Axios", ".", "post", "(", "`http://localhost:${", "config", ".", "port", "}/utils/is-valid-path`", ",", "{", "path", ",", "}", ")", ";", "return", "response", ".", "data", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"checkIfValidPath error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "getGitRepo", "=", "async", "(", "config", ",", "path", ")", "=>", "{", "try", "{", "const", "response", "=", "await", "Axios", ".", "post", "(", "`http://localhost:${", "config", ".", "port", "}/utils/git-info`", ",", "{", "path", ",", "}", ")", ";", "return", "response", ".", "data", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "updateRunningTaskCountInDB", "=", "async", "(", "config", ",", "count", ")", "=>", "{", "try", "{", "const", "response", "=", "await", "Axios", ".", "put", "(", "`http://localhost:${", "config", ".", "port", "}/utils/running-task-count`", ",", "{", "count", ",", "}", ")", ";", "return", "response", ".", "data", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"updateRunningTaskCountInDB error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ";", "export", "const", "getFetcher", "=", "async", "(", "url", ")", "=>", "Axios", ".", "get", "(", "url", ")", ".", "then", "(", "(", "res", ")", "=>", "res", ".", "data", ")", ".", "catch", "(", "function", "(", "error", ")", "{", "if", "(", "error", ".", "response", ")", "{", "console", ".", "error", "(", "error", ".", "response", ".", "data", ")", ";", "return", "error", ".", "response", ".", "data", ";", "}", "else", "if", "(", "error", ".", "request", ")", "{", "console", ".", "error", "(", "error", ".", "request", ")", ";", "}", "else", "{", "console", ".", "error", "(", "\"Error\"", ",", "error", ".", "message", ")", ";", "return", "error", ".", "message", ";", "}", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, 1128, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, 5, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, 10065, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, 2, null, 10065, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 3, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 92, null, null, null, null, null, null, null, null, null, null, null, 1714, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660169
[ "import", "\"xterm/css/xterm.css\"", ";", "import", "{", "Classes", "}", "from", "\"@blueprintjs/core\"", ";", "import", "{", "ITerminalOptions", ",", "ITheme", ",", "Terminal", "}", "from", "\"xterm\"", ";", "import", "{", "FitAddon", "}", "from", "\"xterm-addon-fit\"", ";", "import", "{", "WebLinksAddon", "}", "from", "\"xterm-addon-web-links\"", ";", "import", "{", "WebglAddon", "}", "from", "\"xterm-addon-webgl\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../utils/electron\"", ";", "function", "webLinksOnLinkClick", "(", "_event", ",", "uri", ")", "{", "if", "(", "isRunningInElectron", "(", ")", ")", "{", "window", ".", "desktop", ".", "openWeblink", "(", "uri", ")", ";", "}", "}", "class", "JobTerminal", "{", "public", "_id", ":", "string", ";", "public", "isOpened", "=", "false", ";", "private", "terminal", ":", "Terminal", ";", "public", "fitAddon", ":", "FitAddon", ";", "public", "webLinksAddon", ":", "WebLinksAddon", ";", "private", "options", ":", "ITerminalOptions", "=", "{", "convertEol", ":", "true", ",", "}", ";", "private", "darkTheme", ":", "ITheme", "=", "{", "background", ":", "\"#202B33\"", ",", "foreground", ":", "\"#F5F8FA\"", ",", "}", ";", "private", "lightTheme", ":", "ITheme", "=", "{", "background", ":", "\"#F5F8FA\"", ",", "foreground", ":", "\"#000000\"", ",", "selection", ":", "\"#73869480\"", ",", "}", ";", "private", "_container", ":", "HTMLDivElement", "=", "document", ".", "createElement", "(", "\"div\"", ")", ";", "constructor", "(", "_id", ")", "{", "this", ".", "_id", "=", "_id", ";", "this", ".", "terminal", "=", "new", "Terminal", "(", "this", ".", "options", ")", ";", "this", ".", "fitAddon", "=", "new", "FitAddon", "(", ")", ";", "this", ".", "webLinksAddon", "=", "new", "WebLinksAddon", "(", "webLinksOnLinkClick", ")", ";", "this", ".", "terminal", ".", "loadAddon", "(", "this", ".", "fitAddon", ")", ";", "this", ".", "terminal", ".", "loadAddon", "(", "this", ".", "webLinksAddon", ")", ";", "}", "public", "attachTo", "(", "container", ",", "renderer", "=", "\"canvas\"", ")", "{", "this", ".", "_container", "=", "container", ";", "this", ".", "terminal", ".", "open", "(", "container", ")", ";", "if", "(", "renderer", "===", "\"webgl\"", ")", "{", "this", ".", "terminal", ".", "loadAddon", "(", "new", "WebglAddon", "(", ")", ")", ";", "}", "this", ".", "fitAddon", ".", "fit", "(", ")", ";", "this", ".", "terminal", ".", "element", "?.", "addEventListener", "(", "\"contextmenu\"", ",", "(", "e", ")", "=>", "{", "e", ".", "preventDefault", "(", ")", ";", "if", "(", "this", ".", "terminal", ".", "hasSelection", "(", ")", ")", "{", "const", "copySuccess", "=", "document", ".", "execCommand", "(", "\"copy\"", ")", ";", "if", "(", "copySuccess", ")", "{", "this", ".", "terminal", ".", "clearSelection", "(", ")", ";", "}", "}", "}", ")", ";", "this", ".", "terminal", ".", "element", "?.", "addEventListener", "(", "\"keydown\"", ",", "(", "e", ")", "=>", "{", "e", ".", "preventDefault", "(", ")", ";", "if", "(", "!", "e", ".", "ctrlKey", "&&", "!", "e", ".", "shiftKey", ")", "{", "return", ";", "}", "if", "(", "this", ".", "terminal", ".", "hasSelection", "(", ")", "&&", "e", ".", "key", ".", "toLowerCase", "(", ")", "===", "\"c\"", ")", "{", "const", "copySuccess", "=", "document", ".", "execCommand", "(", "\"copy\"", ")", ";", "if", "(", "copySuccess", ")", "{", "this", ".", "terminal", ".", "clearSelection", "(", ")", ";", "}", "}", "}", ")", ";", "}", "public", "setTheme", "(", "theme", ")", "{", "if", "(", "theme", "===", "Classes", ".", "DARK", ")", "{", "this", ".", "terminal", ".", "setOption", "(", "\"theme\"", ",", "this", ".", "darkTheme", ")", ";", "}", "else", "{", "this", ".", "terminal", ".", "setOption", "(", "\"theme\"", ",", "this", ".", "lightTheme", ")", ";", "}", "}", "public", "getTheme", "(", ")", "{", "return", "this", ".", "terminal", ".", "getOption", "(", "\"theme\"", ")", ";", "}", "public", "removeTheme", "(", ")", "{", "this", ".", "terminal", ".", "setOption", "(", "\"theme\"", ",", "{", "}", ")", ";", "}", "public", "resizeTerminal", "(", "width", ")", "{", "this", ".", "terminal", ".", "resize", "(", "Math", ".", "floor", "(", "width", "/", "10", ")", ",", "20", ")", ";", "}", "public", "updateOutput", "(", "stdout", ")", "{", "this", ".", "terminal", ".", "write", "(", "stdout", ")", ";", "}", "public", "clear", "(", ")", "{", "this", ".", "terminal", ".", "clear", "(", ")", ";", "}", "public", "destroy", "(", ")", "{", "this", ".", "terminal", ".", "dispose", "(", ")", ";", "}", "}", "export", "default", "JobTerminal", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 41, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 39, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 41, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 69, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660170
[ "import", "JobTerminal", "from", "\"./JobTerminal\"", ";", "class", "JobTerminalManager", "{", "public", "static", "getInstance", "(", ")", "{", "if", "(", "!", "JobTerminalManager", ".", "_instance", ")", "{", "JobTerminalManager", ".", "_instance", "=", "new", "JobTerminalManager", "(", ")", ";", "}", "return", "this", ".", "_instance", ";", "}", "private", "static", "_instance", ":", "JobTerminalManager", ";", "private", "_terminals", ":", "{", "[", "key", "]", ":", "JobTerminal", ";", "}", "=", "{", "}", ";", "public", "createJobTerminal", "(", "roomId", ")", "{", "let", "terminal", "=", "this", ".", "getTerminalForRoom", "(", "roomId", ")", ";", "if", "(", "!", "terminal", ")", "{", "terminal", "=", "new", "JobTerminal", "(", "roomId", ")", ";", "this", ".", "_terminals", "[", "roomId", "]", "=", "terminal", ";", "}", "return", "terminal", ";", "}", "public", "updateOutputInRoom", "(", "roomId", ",", "output", ")", "{", "const", "terminal", "=", "this", ".", "_terminals", "[", "roomId", "]", ";", "if", "(", "terminal", ")", "{", "terminal", ".", "updateOutput", "(", "output", ")", ";", "}", "}", "public", "clearTerminalInRoom", "(", "roomId", ")", "{", "const", "terminal", "=", "this", ".", "_terminals", "[", "roomId", "]", ";", "if", "(", "terminal", ")", "{", "terminal", ".", "clear", "(", ")", ";", "}", "}", "public", "getTerminalForRoom", "(", "roomId", ")", "{", "return", "this", ".", "_terminals", "[", "roomId", "]", "||", "undefined", ";", "}", "}", "export", "default", "JobTerminalManager", ";" ]
[ null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, 2, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 2, null, 2, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, 2, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660171
[ "import", "*", "as", "Sentry", "from", "\"@sentry/react\"", ";", "import", "{", "Integrations", "}", "from", "\"@sentry/tracing\"", ";", "import", "{", "atom", "}", "from", "\"recoil\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../../utils/electron\"", ";", "import", "{", "getItem", ",", "setItem", "}", "from", "\"../../../utils/storage\"", ";", "export", "const", "activeProjectAtom", "=", "atom", "<", "IProject", ">", "(", "{", "key", ":", "\"activeProject\"", ",", "default", ":", "{", "_id", ":", "\"\"", ",", "name", ":", "\"\"", ",", "type", ":", "\"\"", ",", "path", ":", "\"\"", ",", "shell", ":", "\"\"", ",", "configFile", ":", "\"\"", ",", "taskSortOrder", ":", "\"name-asc\"", ",", "commands", ":", "[", "]", ",", "}", ",", "}", ")", ";", "export", "const", "projectsAtom", "=", "atom", "<", "IProject", "[", "]", ">", "(", "{", "key", ":", "\"projects\"", ",", "default", ":", "[", "]", ",", "}", ")", ";", "function", "getConfig", "(", ")", "{", "if", "(", "isRunningInElectron", "(", ")", ")", "{", "const", "serverConfig", "=", "window", ".", "desktop", ".", "getAppConfig", "(", ")", ";", "console", ".", "log", "(", "\"serverConfig:\"", ",", "serverConfig", ")", ";", "if", "(", "serverConfig", ".", "sendErrorReports", ")", "{", "Sentry", ".", "init", "(", "{", "dsn", ":", "\"https://[email protected]/5418370\"", ",", "integrations", ":", "[", "new", "Integrations", ".", "BrowserTracing", "(", ")", "]", ",", "tracesSampleRate", ":", "1.0", ",", "beforeSend", "(", "event", ")", "{", "if", "(", "event", ".", "user", ")", "{", "delete", "event", ".", "user", ".", "email", ";", "delete", "event", ".", "user", ".", "ip_address", ";", "}", "return", "event", ";", "}", ",", "}", ")", ";", "}", "return", "serverConfig", ";", "}", "else", "{", "let", "port", "=", "getItem", "(", "\"port\"", ")", "||", "window", ".", "location", ".", "port", "||", "5010", ";", "console", ".", "log", "(", "\"port:\"", ",", "port", ")", ";", "if", "(", "process", ".", "env", ".", "NODE_ENV", "!==", "\"production\"", ")", "{", "port", "=", "5010", ";", "}", "setItem", "(", "\"port\"", ",", "port", ")", ";", "const", "browserOnlyConfig", "=", "{", "port", ",", "enableTerminalTheme", ":", "Boolean", "(", "getItem", "(", "\"enableTerminalTheme\"", ")", ")", "||", "true", ",", "showStatusBar", ":", "Boolean", "(", "getItem", "(", "\"showStatusBar\"", ")", ")", "||", "true", ",", "taskViewStyle", ":", "(", "getItem", "(", "\"taskViewStyle\"", ")", "as", "TaskViewStyle", ")", "||", "\"tabs\"", ",", "shell", ":", "\"\"", ",", "sendErrorReports", ":", "false", ",", "}", ";", "return", "browserOnlyConfig", ";", "}", "}", "export", "const", "configAtom", "=", "atom", "<", "IConfig", ">", "(", "{", "key", ":", "\"config\"", ",", "default", ":", "getConfig", "(", ")", ",", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1664, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1664, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 37, null, 37, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1664, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660172
[ "import", "chalk", "from", "\"chalk\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "{", "io", "}", "from", "\"socket.io-client\"", ";", "import", "JobTerminalManager", "from", "\"../JobTerminalManager\"", ";", "import", "{", "configAtom", "}", "from", "\"../state/atoms\"", ";", "import", "{", "ACTION_TYPES", ",", "useJobs", "}", "from", "\"./JobStore\"", ";", "const", "options", "=", "{", "enabled", ":", "true", ",", "level", ":", "3", "}", ";", "const", "forcedChalk", "=", "new", "chalk", ".", "Instance", "(", "options", ")", ";", "interface", "ISocketContextValue", "{", "isSocketInitialized", ":", "boolean", ";", "initializeSocket", ":", "(", ")", "=>", "void", ";", "subscribeToTaskSocket", ":", "(", "taskID", ":", "string", ",", "command", ":", "IProjectCommand", ",", "projectPath", ":", "string", ",", "shell", "?", ":", "string", ")", "=>", "void", ";", "_socket", ":", "any", ";", "unsubscribeFromTaskSocket", ":", "(", "taskID", ":", "string", ",", "pid", ":", "number", ")", "=>", "void", ";", "restartTask", ":", "(", "taskID", ":", "string", ",", "pid", ":", "number", ",", "command", ":", "IProjectCommand", ",", "projectPath", ":", "string", ",", "shell", "?", ":", "string", ")", "=>", "void", ";", "}", "interface", "ISocketProviderProps", "{", "value", "?", ":", "ISocketContextValue", ";", "children", ":", "React", ".", "ReactNode", ";", "}", "export", "const", "SocketsContext", "=", "React", ".", "createContext", "<", "ISocketContextValue", "|", "undefined", ">", "(", "undefined", ")", ";", "function", "SocketsProvider", "(", "props", ")", "{", "const", "[", "isSocketInitialized", ",", "setSocketInitialized", "]", "=", "React", ".", "useState", "(", "false", ")", ";", "const", "{", "dispatch", "}", "=", "useJobs", "(", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "terminalManager", "=", "JobTerminalManager", ".", "getInstance", "(", ")", ";", "const", "_socket", "=", "React", ".", "useRef", "<", "any", ">", "(", ")", ";", "const", "updateJob", "=", "(", "taskID", ",", "stdout", ")", "=>", "{", "terminalManager", ".", "updateOutputInRoom", "(", "taskID", ",", "stdout", ")", ";", "}", ";", "const", "updateJobProcess", "=", "(", "taskID", ",", "jobProcess", ")", "=>", "{", "dispatch", "(", "{", "taskID", ",", "type", ":", "ACTION_TYPES", ".", "UPDATE_JOB_PROCESS", ",", "process", ":", "jobProcess", ",", "}", ")", ";", "}", ";", "const", "initializeSocket", "=", "React", ".", "useCallback", "(", "(", ")", "=>", "{", "const", "socketURL", "=", "`http://localhost:${", "config", ".", "port", "}/desktop`", ";", "_socket", ".", "current", "=", "io", "(", "socketURL", ",", "{", "withCredentials", ":", "true", ",", "reconnectionAttempts", ":", "2", ",", "}", ")", ";", "if", "(", "isSocketInitialized", ")", "{", "return", ";", "}", "_socket", ".", "current", ".", "on", "(", "`connect`", ",", "(", ")", "=>", "{", "}", ")", ";", "_socket", ".", "current", ".", "on", "(", "`job_started`", ",", "(", "message", ")", "=>", "{", "const", "taskID", "=", "message", ".", "taskID", ";", "console", ".", "info", "(", "`Process started for cmd: ${", "taskID", "}`", ")", ";", "updateJobProcess", "(", "taskID", ",", "message", ".", "data", ")", ";", "if", "(", "message", ".", "data", ".", "pid", ")", "{", "updateJob", "(", "taskID", ",", "`--Process started with PID: ${", "message", ".", "data", ".", "pid", "}--\\n\\n`", ")", ";", "}", "}", ")", ";", "_socket", ".", "current", ".", "on", "(", "`job_output`", ",", "(", "message", ")", "=>", "{", "const", "taskID", "=", "message", ".", "taskID", ";", "updateJob", "(", "taskID", ",", "message", ".", "data", ")", ";", "}", ")", ";", "_socket", ".", "current", ".", "on", "(", "`job_error`", ",", "(", "message", ")", "=>", "{", "const", "taskID", "=", "message", ".", "taskID", ";", "console", ".", "info", "(", "`Process error in taskID: ${", "taskID", "}`", ")", ";", "updateJob", "(", "taskID", ",", "message", ".", "data", ")", ";", "}", ")", ";", "_socket", ".", "current", ".", "on", "(", "`job_close`", ",", "(", "message", ")", "=>", "{", "const", "taskID", "=", "message", ".", "taskID", ";", "console", ".", "info", "(", "`Process close in taskID: ${", "taskID", "}`", ")", ";", "updateJob", "(", "taskID", ",", "forcedChalk", ".", "bold", "(", "message", ".", "data", "+", "\"\\n\"", ")", ")", ";", "updateJobProcess", "(", "taskID", ",", "{", "pid", ":", "-", "1", ",", "}", ")", ";", "}", ")", ";", "_socket", ".", "current", ".", "on", "(", "`job_exit`", ",", "(", "message", ")", "=>", "{", "const", "taskID", "=", "message", ".", "taskID", ";", "console", ".", "info", "(", "`Process exit in taskID: ${", "taskID", "}`", ")", ";", "updateJob", "(", "taskID", ",", "forcedChalk", ".", "bold", "(", "message", ".", "data", "+", "\"\\n\"", ")", ")", ";", "updateJobProcess", "(", "taskID", ",", "{", "pid", ":", "-", "1", ",", "}", ")", ";", "}", ")", ";", "_socket", ".", "current", ".", "on", "(", "`job_killed`", ",", "(", "message", ")", "=>", "{", "const", "taskID", "=", "message", ".", "taskID", ";", "console", ".", "info", "(", "`Process killed in taskID: ${", "taskID", "}; killed process id: ${", "message", ".", "data", "}`", ")", ";", "updateJob", "(", "taskID", ",", "forcedChalk", ".", "bold", ".", "redBright", "(", "`process with id ${", "message", ".", "data", "} killed by user.\\n`", ")", ")", ";", "updateJobProcess", "(", "taskID", ",", "{", "pid", ":", "-", "1", ",", "}", ")", ";", "}", ")", ";", "setSocketInitialized", "(", "true", ")", ";", "}", ",", "[", "]", ")", ";", "const", "subscribeToTaskSocket", "=", "React", ".", "useCallback", "(", "(", "taskID", ",", "command", ",", "projectPath", ",", "shell", ")", "=>", "{", "try", "{", "if", "(", "_socket", "&&", "_socket", ".", "current", ")", "{", "_socket", ".", "current", ".", "emit", "(", "\"subscribe\"", ",", "{", "taskID", ",", "command", ",", "projectPath", ",", "shell", ",", "}", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"subscribeToTaskSocket error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ",", "[", "]", ")", ";", "const", "unsubscribeFromTaskSocket", "=", "React", ".", "useCallback", "(", "(", "taskID", ",", "pid", ")", "=>", "{", "try", "{", "if", "(", "_socket", "&&", "_socket", ".", "current", ")", "{", "_socket", ".", "current", ".", "emit", "(", "\"unsubscribe\"", ",", "{", "taskID", ",", "pid", ",", "}", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"unsubscribeFromTaskSocket error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ",", "[", "]", ")", ";", "const", "restartTask", "=", "React", ".", "useCallback", "(", "(", "taskID", ",", "pid", ",", "command", ",", "projectPath", ",", "shell", ")", "=>", "{", "try", "{", "if", "(", "_socket", "&&", "_socket", ".", "current", ")", "{", "_socket", ".", "current", ".", "emit", "(", "\"restart\"", ",", "{", "taskID", ",", "pid", ",", "command", ",", "projectPath", ",", "shell", ",", "}", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "\"subscribeToTaskSocket error:\"", ",", "error", ")", ";", "throw", "error", ";", "}", "}", ",", "[", "]", ")", ";", "const", "value", "=", "React", ".", "useMemo", "(", "(", ")", "=>", "(", "{", "isSocketInitialized", ",", "initializeSocket", ",", "subscribeToTaskSocket", ",", "_socket", ",", "unsubscribeFromTaskSocket", ",", "restartTask", ",", "}", ")", ",", "[", "isSocketInitialized", ",", "initializeSocket", ",", "subscribeToTaskSocket", ",", "_socket", ",", "unsubscribeFromTaskSocket", ",", "restartTask", ",", "]", ")", ";", "return", "<", "SocketsContext", ".", "Provider", "{", "...", "props", "}", "value", "=", "{", "value", "}", "/", ">", ";", "}", "function", "useSockets", "(", ")", "{", "const", "context", "=", "React", ".", "useContext", "(", "SocketsContext", ")", ";", "if", "(", "!", "context", ")", "{", "throw", "new", "Error", "(", "\"useSockets must be used within a ConfigProvider\"", ")", ";", "}", "return", "context", ";", "}", "export", "{", "SocketsProvider", ",", "useSockets", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1437, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 31, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660173
[ "import", "React", "from", "\"react\"", ";", "import", "{", "useRecoilState", ",", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../../utils/electron\"", ";", "import", "{", "deleteProjectInDb", ",", "deleteTaskInDb", ",", "getProjects", ",", "renameProjectInDb", ",", "reorderTasksInDb", ",", "saveProjectInDb", ",", "saveTaskInDb", ",", "updateProjectInDb", ",", "updateRunningTaskCountInDB", ",", "updateTaskInDb", ",", "}", "from", "\"../API\"", ";", "import", "{", "useMountedState", "}", "from", "\"../hooks\"", ";", "import", "JobTerminalManager", "from", "\"../JobTerminalManager\"", ";", "import", "{", "activeProjectAtom", ",", "configAtom", ",", "projectsAtom", "}", "from", "\"../state/atoms\"", ";", "import", "{", "ACTION_TYPES", ",", "useJobs", "}", "from", "\"./JobStore\"", ";", "import", "{", "useSockets", "}", "from", "\"./SocketStore\"", ";", "interface", "IProjectContextValue", "{", "projectsRunningTaskCount", ":", "{", "[", "key", "]", ":", "number", ";", "}", ";", "totalRunningTaskCount", ":", "number", ";", "projects", ":", "IProject", "[", "]", ";", "activeProject", ":", "IProject", ";", "setActiveProject", ":", "(", "activeProject", ":", "IProject", ")", "=>", "void", ";", "setProjects", ":", "any", ";", "updateProjects", ":", "(", ")", "=>", "void", ";", "addTask", ":", "(", "projectId", ":", "string", ",", "task", ":", "IProjectCommand", ")", "=>", "any", ";", "updateTask", ":", "(", "projectId", ":", "string", ",", "taskId", ":", "string", ",", "task", ":", "IProjectCommand", ")", "=>", "any", ";", "deleteTask", ":", "(", "projectId", ":", "string", ",", "taskId", ":", "string", ")", "=>", "any", ";", "addProject", ":", "(", "data", ":", "any", ")", "=>", "any", ";", "deleteProject", ":", "(", "projectId", ":", "string", ")", "=>", "any", ";", "reorderTasks", ":", "(", "projectId", ":", "string", ",", "newTasks", ":", "IProjectCommand", "[", "]", ",", "taskSortOrder", "?", ":", "TASK_SORT_ORDER", ")", "=>", "any", ";", "loadingProjects", ":", "boolean", ";", "renameProject", ":", "(", "projectId", ":", "string", ",", "newName", ":", "string", ")", "=>", "any", ";", "updateProject", ":", "(", "projectId", ":", "string", ",", "newProjectData", ":", "IProject", ")", "=>", "any", ";", "runAllStoppedTasks", ":", "(", ")", "=>", "void", ";", "stopAllRunningTasks", ":", "(", ")", "=>", "void", ";", "}", "interface", "IProjectsProviderProps", "{", "value", "?", ":", "IProjectContextValue", ";", "children", ":", "React", ".", "ReactNode", ";", "}", "function", "getJobData", "(", "state", ",", "taskID", ")", "{", "return", "state", "[", "taskID", "]", "||", "\"\"", ";", "}", "const", "getRunningTasksCountForProjects", "=", "(", "projects", ",", "runningTasks", ")", ":", "{", "runningTasksPerProject", ":", "Record", "<", "string", ",", "number", ">", ";", "totalRunningTaskCount", ":", "number", ";", "}", "=>", "{", "const", "runningTasksPerProject", "=", "{", "}", ";", "let", "totalRunningTaskCount", "=", "0", ";", "projects", ".", "forEach", "(", "(", "project", ")", "=>", "{", "const", "{", "commands", ",", "_id", ":", "projectID", "}", "=", "project", ";", "let", "runningCount", "=", "0", ";", "commands", ".", "forEach", "(", "(", "command", ")", "=>", "{", "const", "{", "_id", ":", "commandID", "}", "=", "command", ";", "if", "(", "runningTasks", "[", "commandID", "]", ")", "{", "runningCount", "++", ";", "totalRunningTaskCount", "++", ";", "}", "}", ")", ";", "runningTasksPerProject", "[", "projectID", "]", "=", "runningCount", ";", "}", ")", ";", "return", "{", "runningTasksPerProject", ",", "totalRunningTaskCount", "}", ";", "}", ";", "export", "const", "ProjectContext", "=", "React", ".", "createContext", "<", "IProjectContextValue", "|", "undefined", ">", "(", "undefined", ")", ";", "function", "ProjectsProvider", "(", "props", ")", "{", "const", "initialProject", "=", "React", ".", "useMemo", "<", "IProject", ">", "(", "(", ")", "=>", "(", "{", "_id", ":", "\"\"", ",", "name", ":", "\"\"", ",", "type", ":", "\"\"", ",", "path", ":", "\"\"", ",", "shell", ":", "\"\"", ",", "commands", ":", "[", "]", ",", "}", ")", ",", "[", "]", ")", ";", "const", "isMounted", "=", "useMountedState", "(", ")", ";", "const", "{", "runningTasks", ",", "state", ":", "jobState", ",", "dispatch", ",", "isTaskRunning", "}", "=", "useJobs", "(", ")", ";", "const", "terminalManager", "=", "JobTerminalManager", ".", "getInstance", "(", ")", ";", "const", "{", "subscribeToTaskSocket", ",", "unsubscribeFromTaskSocket", "}", "=", "useSockets", "(", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "[", "activeProject", ",", "setActiveProject", "]", "=", "useRecoilState", "(", "activeProjectAtom", ")", ";", "const", "[", "projects", ",", "setProjects", "]", "=", "useRecoilState", "(", "projectsAtom", ")", ";", "const", "[", "loadingProjects", ",", "setLoadingProjects", "]", "=", "React", ".", "useState", "(", "true", ")", ";", "const", "[", "projectsRunningTaskCount", ",", "setProjectsRunningTaskCount", "]", "=", "React", ".", "useState", "<", "any", ">", "(", "{", "}", ")", ";", "const", "clearJobOutput", "=", "React", ".", "useCallback", "(", "(", "taskID", ")", "=>", "{", "dispatch", "(", "{", "type", ":", "ACTION_TYPES", ".", "CLEAR_OUTPUT", ",", "taskID", ",", "}", ")", ";", "terminalManager", ".", "clearTerminalInRoom", "(", "taskID", ")", ";", "}", ",", "[", "dispatch", ",", "terminalManager", "]", ")", ";", "const", "updateJobProcess", "=", "React", ".", "useCallback", "(", "(", "taskID", ",", "jobProcess", ")", "=>", "{", "dispatch", "(", "{", "taskID", ",", "type", ":", "ACTION_TYPES", ".", "UPDATE_JOB_PROCESS", ",", "process", ":", "jobProcess", ",", "}", ")", ";", "}", ",", "[", "dispatch", "]", ")", ";", "const", "stopJob", "=", "React", ".", "useCallback", "(", "(", "command", ")", "=>", "{", "const", "taskID", "=", "command", ".", "_id", ";", "const", "process", "=", "getJobData", "(", "jobState", ",", "taskID", ")", ".", "process", ";", "const", "{", "pid", "}", "=", "process", ";", "unsubscribeFromTaskSocket", "(", "taskID", ",", "pid", ")", ";", "updateJobProcess", "(", "taskID", ",", "{", "pid", ":", "-", "1", ",", "}", ")", ";", "}", ",", "[", "jobState", ",", "updateJobProcess", ",", "unsubscribeFromTaskSocket", "]", ")", ";", "const", "stopTask", "=", "React", ".", "useCallback", "(", "(", "command", ")", "=>", "{", "try", "{", "stopJob", "(", "command", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "`stopTask error: `", ",", "error", ")", ";", "}", "}", ",", "[", "stopJob", "]", ")", ";", "const", "[", "totalRunningTaskCount", ",", "setTotalRunningTaskCount", "]", "=", "React", ".", "useState", "<", "number", ">", "(", "0", ")", ";", "const", "updateProjects", "=", "React", ".", "useCallback", "(", "(", ")", "=>", "{", "const", "reloadProjects", "=", "async", "(", ")", "=>", "{", "try", "{", "setLoadingProjects", "(", "true", ")", ";", "const", "receivedProjects", "=", "await", "getProjects", "(", "config", ")", ";", "if", "(", "receivedProjects", "?.", "length", ">", "0", ")", "{", "setProjects", "(", "receivedProjects", ")", ";", "if", "(", "activeProject", ".", "_id", "===", "\"\"", ")", "{", "setActiveProject", "(", "receivedProjects", "[", "0", "]", ")", ";", "}", "else", "{", "const", "newActiveProject", "=", "receivedProjects", ".", "find", "(", "(", "project", ")", "=>", "project", ".", "_id", "===", "activeProject", ".", "_id", ")", ";", "if", "(", "newActiveProject", ")", "{", "setActiveProject", "(", "newActiveProject", ")", ";", "}", "else", "{", "setActiveProject", "(", "receivedProjects", "[", "0", "]", ")", ";", "}", "}", "}", "else", "{", "setProjects", "(", "[", "]", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "error", ")", ";", "}", "finally", "{", "if", "(", "isMounted", "(", ")", ")", "{", "setLoadingProjects", "(", "false", ")", ";", "}", "}", "}", ";", "reloadProjects", "(", ")", ";", "}", ",", "[", "config", ",", "setProjects", ",", "activeProject", ".", "_id", ",", "setActiveProject", ",", "isMounted", "]", ")", ";", "const", "deleteTask", "=", "React", ".", "useCallback", "(", "(", "projectId", ",", "taskId", ")", "=>", "{", "const", "deleteTaskFn", "=", "async", "(", ")", "=>", "{", "await", "deleteTaskInDb", "(", "config", ",", "projectId", ",", "taskId", ")", ";", "const", "currentProjectIndex", "=", "projects", ".", "findIndex", "(", "(", "x", ")", "=>", "x", ".", "_id", "===", "projectId", ")", ";", "const", "projectWithThisTask", "=", "projects", "[", "currentProjectIndex", "]", ";", "if", "(", "projectWithThisTask", ")", "{", "const", "currentTasks", "=", "[", "...", "projectWithThisTask", ".", "commands", "]", ";", "const", "updatedTasks", "=", "currentTasks", ".", "filter", "(", "(", "x", ")", "=>", "x", ".", "_id", "!==", "taskId", ")", ";", "const", "updatedProject", "=", "{", "...", "projectWithThisTask", ",", "commands", ":", "updatedTasks", ",", "}", ";", "const", "_projects", "=", "[", "...", "projects", "]", ";", "_projects", ".", "splice", "(", "currentProjectIndex", ",", "1", ",", "updatedProject", ")", ";", "setProjects", "(", "_projects", ")", ";", "setActiveProject", "(", "updatedProject", ")", ";", "}", "}", ";", "deleteTaskFn", "(", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "setProjects", ",", "setActiveProject", "]", ")", ";", "const", "renameProject", "=", "React", ".", "useCallback", "(", "(", "projectId", ",", "newName", ")", "=>", "{", "const", "renameProjectFn", "=", "async", "(", ")", "=>", "{", "await", "renameProjectInDb", "(", "config", ",", "projectId", ",", "newName", ")", ";", "const", "currentProjectIndex", "=", "projects", ".", "findIndex", "(", "(", "x", ")", "=>", "x", ".", "_id", "===", "projectId", ")", ";", "const", "renamingProject", "=", "projects", "[", "currentProjectIndex", "]", ";", "if", "(", "renamingProject", ")", "{", "const", "updatedProject", "=", "{", "...", "renamingProject", ",", "name", ":", "newName", ",", "}", ";", "const", "_projects", "=", "[", "...", "projects", "]", ";", "_projects", ".", "splice", "(", "currentProjectIndex", ",", "1", ",", "updatedProject", ")", ";", "if", "(", "isMounted", "(", ")", ")", "{", "setProjects", "(", "_projects", ")", ";", "setActiveProject", "(", "updatedProject", ")", ";", "}", "}", "}", ";", "renameProjectFn", "(", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "isMounted", ",", "setProjects", ",", "setActiveProject", "]", ")", ";", "const", "updateProject", "=", "React", ".", "useCallback", "(", "(", "projectId", ",", "newProjectData", ")", "=>", "{", "const", "updateProjectFn", "=", "async", "(", ")", "=>", "{", "await", "updateProjectInDb", "(", "config", ",", "projectId", ",", "newProjectData", ")", ";", "const", "currentProjectIndex", "=", "projects", ".", "findIndex", "(", "(", "x", ")", "=>", "x", ".", "_id", "===", "projectId", ")", ";", "const", "renamingProject", "=", "projects", "[", "currentProjectIndex", "]", ";", "if", "(", "renamingProject", ")", "{", "const", "updatedProject", "=", "{", "...", "renamingProject", ",", "...", "newProjectData", ",", "}", ";", "const", "_projects", "=", "[", "...", "projects", "]", ";", "_projects", ".", "splice", "(", "currentProjectIndex", ",", "1", ",", "updatedProject", ")", ";", "if", "(", "isMounted", "(", ")", ")", "{", "setProjects", "(", "_projects", ")", ";", "setActiveProject", "(", "updatedProject", ")", ";", "}", "}", "}", ";", "updateProjectFn", "(", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "isMounted", ",", "setProjects", ",", "setActiveProject", "]", ")", ";", "const", "reorderTasks", "=", "React", ".", "useCallback", "(", "(", "projectId", ",", "commands", ",", "taskSortOrder", "=", "\"name-asc\"", ")", "=>", "{", "const", "reorderTasksFn", "=", "async", "(", ")", "=>", "{", "await", "reorderTasksInDb", "(", "config", ",", "projectId", ",", "commands", ",", "taskSortOrder", ")", ";", "const", "currentProjectIndex", "=", "projects", ".", "findIndex", "(", "(", "x", ")", "=>", "x", ".", "_id", "===", "projectId", ")", ";", "const", "projectWithThisTask", "=", "projects", "[", "currentProjectIndex", "]", ";", "if", "(", "projectWithThisTask", ")", "{", "const", "updatedProject", "=", "{", "...", "projectWithThisTask", ",", "commands", ",", "taskSortOrder", ",", "}", ";", "const", "_projects", "=", "[", "...", "projects", "]", ";", "_projects", ".", "splice", "(", "currentProjectIndex", ",", "1", ",", "updatedProject", ")", ";", "setProjects", "(", "_projects", ")", ";", "setActiveProject", "(", "updatedProject", ")", ";", "}", "}", ";", "reorderTasksFn", "(", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "setProjects", ",", "setActiveProject", "]", ")", ";", "const", "addTask", "=", "React", ".", "useCallback", "(", "(", "projectId", ",", "task", ")", "=>", "{", "const", "addTaskInFn", "=", "async", "(", "projectID", ",", "newTask", ")", "=>", "{", "try", "{", "await", "saveTaskInDb", "(", "config", ",", "projectID", ",", "newTask", ")", ";", "const", "currentProjectIndex", "=", "projects", ".", "findIndex", "(", "(", "x", ")", "=>", "x", ".", "_id", "===", "projectID", ")", ";", "const", "projectWithThisTask", "=", "projects", "[", "currentProjectIndex", "]", ";", "if", "(", "projectWithThisTask", ")", "{", "const", "updatedTasks", "=", "[", "newTask", ",", "...", "projectWithThisTask", ".", "commands", "]", ";", "const", "updatedProject", "=", "{", "...", "projectWithThisTask", ",", "commands", ":", "updatedTasks", ",", "}", ";", "const", "_projects", "=", "[", "...", "projects", "]", ";", "_projects", ".", "splice", "(", "currentProjectIndex", ",", "1", ",", "updatedProject", ")", ";", "setProjects", "(", "_projects", ")", ";", "setActiveProject", "(", "updatedProject", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "}", "}", ";", "addTaskInFn", "(", "projectId", ",", "task", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "setProjects", ",", "setActiveProject", "]", ")", ";", "const", "updateTask", "=", "React", ".", "useCallback", "(", "(", "projectId", ",", "taskId", ",", "task", ")", "=>", "{", "const", "updateTaskFn", "=", "async", "(", "projectID", ",", "updatingTaskID", ",", "updatedTask", ")", "=>", "{", "try", "{", "await", "updateTaskInDb", "(", "config", ",", "projectID", ",", "updatingTaskID", ",", "updatedTask", ")", ";", "const", "currentProjectIndex", "=", "projects", ".", "findIndex", "(", "(", "x", ")", "=>", "x", ".", "_id", "===", "projectID", ")", ";", "const", "projectWithThisTask", "=", "projects", "[", "currentProjectIndex", "]", ";", "if", "(", "projectWithThisTask", ")", "{", "const", "taskIndex", "=", "projectWithThisTask", ".", "commands", ".", "findIndex", "(", "(", "iterTask", ")", "=>", "iterTask", ".", "_id", "===", "updatingTaskID", ")", ";", "if", "(", "taskIndex", "<", "0", ")", "{", "return", ";", "}", "const", "updatedTasks", "=", "[", "...", "projectWithThisTask", ".", "commands", "]", ";", "updatedTasks", ".", "splice", "(", "taskIndex", ",", "1", ",", "updatedTask", ")", ";", "const", "updatedProject", "=", "{", "...", "projectWithThisTask", ",", "commands", ":", "updatedTasks", ",", "}", ";", "const", "_projects", "=", "[", "...", "projects", "]", ";", "_projects", ".", "splice", "(", "currentProjectIndex", ",", "1", ",", "updatedProject", ")", ";", "setProjects", "(", "_projects", ")", ";", "setActiveProject", "(", "updatedProject", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "}", "}", ";", "updateTaskFn", "(", "projectId", ",", "taskId", ",", "task", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "setProjects", ",", "setActiveProject", "]", ")", ";", "const", "addProject", "=", "React", ".", "useCallback", "(", "(", "projectData", ")", "=>", "{", "const", "addProjectFn", "=", "async", "(", ")", "=>", "{", "const", "newProject", "=", "await", "saveProjectInDb", "(", "config", ",", "projectData", ")", ";", "if", "(", "!", "newProject", ")", "{", "throw", "new", "Error", "(", "\"Failed to add project. Something wrong with server.\"", ")", ";", "}", "const", "copyOfProjects", "=", "projects", ".", "slice", "(", ")", ";", "const", "updatedProjects", "=", "[", "...", "copyOfProjects", ",", "newProject", "]", ";", "setProjects", "(", "updatedProjects", ")", ";", "setActiveProject", "(", "newProject", ")", ";", "}", ";", "addProjectFn", "(", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "setActiveProject", ",", "setProjects", "]", ")", ";", "const", "deleteProject", "=", "React", ".", "useCallback", "(", "(", "projectId", ")", "=>", "{", "const", "deleteProjectFn", "=", "async", "(", ")", "=>", "{", "if", "(", "!", "projectId", ")", "{", "throw", "new", "Error", "(", "\"ProjectID not passed to deleteProject\"", ")", ";", "}", "await", "deleteProjectInDb", "(", "config", ",", "projectId", ")", ";", "const", "newProjects", "=", "projects", ".", "filter", "(", "(", "x", ")", "=>", "x", ".", "_id", "!==", "projectId", ")", ";", "setProjects", "(", "newProjects", ")", ";", "if", "(", "newProjects", "&&", "newProjects", "?.", "length", ">", "0", ")", "{", "setActiveProject", "(", "newProjects", "[", "0", "]", ")", ";", "}", "else", "{", "setActiveProject", "(", "initialProject", ")", ";", "}", "}", ";", "deleteProjectFn", "(", ")", ";", "}", ",", "[", "config", ",", "projects", ",", "setProjects", ",", "setActiveProject", ",", "initialProject", "]", ")", ";", "const", "startJob", "=", "React", ".", "useCallback", "(", "(", "command", ")", "=>", "{", "const", "taskID", "=", "command", ".", "_id", ";", "clearJobOutput", "(", "taskID", ")", ";", "const", "shell", "=", "command", ".", "shell", "||", "activeProject", ".", "shell", "||", "config", ".", "shell", "||", "\"\"", ";", "subscribeToTaskSocket", "(", "taskID", ",", "command", ",", "activeProject", ".", "path", ",", "shell", ")", ";", "updateTask", "(", "activeProject", ".", "_id", ",", "taskID", ",", "{", "...", "command", ",", "lastExecutedAt", ":", "new", "Date", "(", ")", ",", "}", ")", ";", "}", ",", "[", "activeProject", ".", "_id", ",", "activeProject", ".", "path", ",", "activeProject", ".", "shell", ",", "clearJobOutput", ",", "config", ".", "shell", ",", "subscribeToTaskSocket", ",", "updateTask", ",", "]", ")", ";", "const", "startTask", "=", "React", ".", "useCallback", "(", "(", "command", ")", "=>", "{", "try", "{", "startJob", "(", "command", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "`startTask error: `", ",", "error", ")", ";", "}", "}", ",", "[", "startJob", "]", ")", ";", "const", "runAllStoppedTasks", "=", "React", ".", "useCallback", "(", "(", ")", "=>", "{", "const", "commandsInProject", "=", "activeProject", ".", "commands", ";", "commandsInProject", ".", "forEach", "(", "(", "command", ")", "=>", "{", "if", "(", "!", "isTaskRunning", "(", "command", ".", "_id", ")", ")", "{", "startTask", "(", "command", ")", ";", "}", "}", ")", ";", "}", ",", "[", "activeProject", ".", "commands", ",", "isTaskRunning", ",", "startTask", "]", ")", ";", "const", "stopAllRunningTasks", "=", "React", ".", "useCallback", "(", "(", ")", "=>", "{", "const", "commandsInProject", "=", "activeProject", ".", "commands", ";", "commandsInProject", ".", "forEach", "(", "(", "command", ")", "=>", "{", "if", "(", "isTaskRunning", "(", "command", ".", "_id", ")", ")", "{", "stopTask", "(", "command", ")", ";", "}", "}", ")", ";", "}", ",", "[", "activeProject", ",", "stopTask", ",", "isTaskRunning", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "(", "async", "(", ")", "=>", "{", "try", "{", "await", "updateRunningTaskCountInDB", "(", "config", ",", "totalRunningTaskCount", ")", ";", "if", "(", "isRunningInElectron", "(", ")", ")", "{", "window", ".", "desktop", ".", "updateTaskCount", "(", "totalRunningTaskCount", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error updating task count:\"", ",", "error", ")", ";", "}", "}", ")", "(", ")", ";", "}", ",", "[", "config", ",", "totalRunningTaskCount", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "if", "(", "!", "projects", ")", "{", "return", ";", "}", "const", "{", "runningTasksPerProject", ",", "totalRunningTaskCount", ":", "nextTotalRunningTaskCount", ",", "}", "=", "getRunningTasksCountForProjects", "(", "projects", ",", "runningTasks", ")", ";", "setProjectsRunningTaskCount", "(", "runningTasksPerProject", ")", ";", "setTotalRunningTaskCount", "(", "nextTotalRunningTaskCount", ")", ";", "}", ",", "[", "runningTasks", ",", "projects", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "updateProjects", "(", ")", ";", "}", ",", "[", "]", ")", ";", "const", "value", "=", "React", ".", "useMemo", "(", "(", ")", "=>", "{", "return", "{", "projects", ",", "projectsRunningTaskCount", ",", "activeProject", ",", "setActiveProject", ",", "setProjects", ",", "updateProjects", ",", "loadingProjects", ",", "addTask", ",", "updateTask", ",", "deleteTask", ",", "addProject", ",", "deleteProject", ",", "reorderTasks", ",", "renameProject", ",", "updateProject", ",", "runAllStoppedTasks", ",", "stopAllRunningTasks", ",", "totalRunningTaskCount", ",", "}", ";", "}", ",", "[", "projects", ",", "projectsRunningTaskCount", ",", "activeProject", ",", "setActiveProject", ",", "setProjects", ",", "updateProjects", ",", "loadingProjects", ",", "addTask", ",", "updateTask", ",", "deleteTask", ",", "addProject", ",", "deleteProject", ",", "reorderTasks", ",", "renameProject", ",", "updateProject", ",", "runAllStoppedTasks", ",", "stopAllRunningTasks", ",", "totalRunningTaskCount", ",", "]", ")", ";", "return", "<", "ProjectContext", ".", "Provider", "value", "=", "{", "value", "}", "{", "...", "props", "}", "/>;", "}", "function", "useProjects", "(", ")", "{", "const", "context", "=", "React", ".", "useContext", "(", "ProjectContext", ")", ";", "if", "(", "!", "context", ")", "{", "throw", "new", "Error", "(", "\"useProjects must be used within a ProjectsProvider\"", ")", ";", "}", "return", "context", ";", "}", "export", "{", "ProjectsProvider", ",", "useProjects", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 31, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 0, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 10065, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, 2, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, 1128, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, 5, null, 0, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, 10065, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, 2, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 10065, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660174
[ "import", "{", "Classes", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "getItem", ",", "setItem", "}", "from", "\"../../../utils/storage\"", ";", "import", "{", "useMountedState", "}", "from", "\"../hooks\"", ";", "interface", "IThemeContextValue", "{", "theme", ":", "string", ";", "setTheme", ":", "(", "theme", ":", "string", ")", "=>", "void", ";", "}", "interface", "IThemeProviderProps", "{", "value", "?", ":", "IThemeContextValue", ";", "children", ":", "React", ".", "ReactNode", ";", "}", "export", "const", "ThemeContext", "=", "React", ".", "createContext", "<", "IThemeContextValue", "|", "undefined", ">", "(", "undefined", ")", ";", "function", "ThemeProvider", "(", "props", ")", "{", "const", "isMounted", "=", "useMountedState", "(", ")", ";", "const", "[", "theme", ",", "setTheme", "]", "=", "React", ".", "useState", "(", "getItem", "(", "\"theme\"", ")", "||", "Classes", ".", "DARK", ")", ";", "const", "value", "=", "React", ".", "useMemo", "(", "(", ")", "=>", "{", "return", "{", "theme", ",", "setTheme", "}", ";", "}", ",", "[", "theme", ",", "setTheme", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "if", "(", "isMounted", "(", ")", ")", "{", "setItem", "(", "\"theme\"", ",", "theme", ")", ";", "}", "}", ",", "[", "theme", ",", "isMounted", "]", ")", ";", "return", "<", "ThemeContext", ".", "Provider", "value", "=", "{", "value", "}", "{", "...", "props", "}", "/>;", "}", "function", "useTheme", "(", ")", "{", "const", "context", "=", "React", ".", "useContext", "(", "ThemeContext", ")", ";", "if", "(", "!", "context", ")", "{", "throw", "new", "Error", "(", "\"useTheme must be used within a ThemeProvider\"", ")", ";", "}", "return", "context", ";", "}", "export", "{", "ThemeProvider", ",", "useTheme", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 31, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, 0, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 0, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660175
[ "import", "{", "checkIfValidPath", "}", "from", "\"../components/shared/API\"", ";", "export", "const", "isValidPath", "=", "async", "(", "config", ",", "path", ")", ":", "Promise", "<", "boolean", ">", "=>", "{", "try", "{", "const", "response", "=", "await", "checkIfValidPath", "(", "config", ",", "path", ")", ";", "if", "(", "response", ".", "isValid", ")", "{", "return", "true", ";", "}", "return", "false", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "return", "false", ";", "}", "}", ";" ]
[ null, null, null, null, null, null, null, null, null, 7, null, null, null, 866, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660176
[ "import", "{", "Icon", "}", "from", "\"@blueprintjs/core\"", ";", "import", "{", "motion", "}", "from", "\"framer-motion\"", ";", "import", "React", ",", "{", "useEffect", ",", "useState", "}", "from", "\"react\"", ";", "const", "clamp", "=", "(", "n", ",", "min", ",", "max", ")", "=>", "Math", ".", "max", "(", "Math", ".", "min", "(", "n", ",", "max", ")", ",", "min", ")", ";", "function", "Resizable", "(", "{", "children", ",", "onResize", ",", "width", ",", "height", "}", ")", "{", "const", "[", "isDragging", ",", "setIsDragging", "]", "=", "useState", "(", "false", ")", ";", "const", "onResizeFn", "=", "React", ".", "useRef", "<", "any", ">", "(", "onResize", ")", ";", "useEffect", "(", "(", ")", "=>", "{", "return", "height", ".", "onChange", "(", "(", ")", "=>", "{", "onResizeFn", ".", "current", "?.", "(", ")", ";", "}", ")", ";", "}", ",", "[", "height", "]", ")", ";", "const", "handleDrag", "=", "React", ".", "useCallback", "(", "(", "event", ",", "info", ")", "=>", "{", "const", "newHeight", "=", "height", ".", "get", "(", ")", "+", "info", ".", "delta", ".", "y", ";", "const", "h", "=", "clamp", "(", "newHeight", ",", "200", ",", "900", ")", ";", "height", ".", "set", "(", "h", ")", ";", "}", ",", "[", "height", "]", ")", ";", "return", "(", "<", "div", ">", "<", "motion", ".", "div", "style", "=", "{", "{", "height", ",", "width", ",", "cursor", ":", "isDragging", "?", "\"row-resize\"", ":", "\"\"", ",", "}", "}", ">", "{", "children", "}", "<", "/motion.div>", "<", "div", "style", "=", "{", "{", "display", ":", "\"flex\"", ",", "justifyContent", ":", "\"center\"", ",", "marginTop", ":", "0", "}", "}", ">", "<", "motion", ".", "div", "style", "=", "{", "{", "cursor", ":", "\"row-resize\"", ",", "textAlign", ":", "\"center\"", ",", "}", "}", "drag", "=", "\"y\"", "dragConstraints", "=", "{", "{", "top", ":", "0", ",", "left", ":", "0", ",", "right", ":", "0", ",", "bottom", ":", "0", "}", "}", "dragElastic", "=", "{", "0", "}", "dragMomentum", "=", "{", "false", "}", "onDrag", "=", "{", "handleDrag", "}", "onDragEnd", "=", "{", "(", ")", "=>", "{", "setIsDragging", "(", "false", ")", ";", "}", "}", "onDragStart", "=", "{", "(", ")", "=>", "{", "setIsDragging", "(", "true", ")", ";", "}", "}", ">", "<", "Icon", "icon", "=", "\"drag-handle-horizontal\"", "style", "=", "{", "{", "left", ":", "\"50%\"", ",", "cursor", ":", "\"ns-resize\"", "}", "}", "/>", "<", "/motion.div>", "<", "/div>", "<", "/div>);", "}", "export", "default", "React", ".", "memo", "(", "Resizable", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, 3, null, 3, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 9, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660177
[ "import", "{", "MotionValue", ",", "useMotionValue", "}", "from", "\"framer-motion\"", ";", "import", "throttle", "from", "\"lodash/throttle\"", ";", "import", "React", ",", "{", "useEffect", "}", "from", "\"react\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "JobTerminal", "from", "\"../shared/JobTerminal\"", ";", "import", "JobTerminalManager", "from", "\"../shared/JobTerminalManager\"", ";", "import", "{", "configAtom", "}", "from", "\"../shared/state/atoms\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "Resizable", "from", "\"./Resizable\"", ";", "interface", "ICommandProps", "{", "taskID", ":", "string", ";", "index", ":", "number", ";", "containerWidth", ":", "MotionValue", ";", "}", "const", "CommandOutputXterm", "=", "React", ".", "memo", "(", "(", "{", "taskID", ",", "index", ",", "containerWidth", "}", ")", "=>", "{", "const", "elRef", "=", "React", ".", "useRef", "<", "HTMLDivElement", ">", "(", "null", ")", ";", "const", "terminal", "=", "React", ".", "useRef", "<", "JobTerminal", "|", "null", ">", "(", "null", ")", ";", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "const", "currentTheme", "=", "React", ".", "useRef", "<", "any", ">", "(", "null", ")", ";", "const", "themeTimeout", "=", "React", ".", "useRef", "<", "any", ">", "(", "null", ")", ";", "const", "height", "=", "useMotionValue", "(", "400", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "setTheme", "=", "(", ")", "=>", "{", "if", "(", "terminal", "&&", "terminal", ".", "current", ")", "{", "terminal", ".", "current", ".", "setTheme", "(", "theme", ")", ";", "if", "(", "currentTheme", "&&", "currentTheme", ".", "current", ")", "{", "currentTheme", ".", "current", "=", "theme", ";", "}", "}", "}", ";", "const", "removeTheme", "=", "(", ")", "=>", "{", "if", "(", "terminal", "&&", "terminal", ".", "current", ")", "{", "terminal", ".", "current", ".", "removeTheme", "(", ")", ";", "}", "}", ";", "useEffect", "(", "(", ")", "=>", "{", "if", "(", "elRef", "&&", "elRef", ".", "current", ")", "{", "const", "parentWidth", "=", "elRef", ".", "current", ".", "parentElement", "?.", "parentElement", "?.", "getBoundingClientRect", "(", ")", ".", "width", "??", "800", ";", "const", "parentHeight", "=", "elRef", ".", "current", ".", "parentElement", "?.", "parentElement", "?.", "getBoundingClientRect", "(", ")", ".", "height", "??", "400", ";", "height", ".", "set", "(", "parentHeight", ")", ";", "containerWidth", ".", "set", "(", "parentWidth", ")", ";", "if", "(", "terminal", ".", "current", "===", "null", ")", "{", "terminal", ".", "current", "=", "JobTerminalManager", ".", "getInstance", "(", ")", ".", "createJobTerminal", "(", "taskID", ")", ";", "terminal", ".", "current", ".", "attachTo", "(", "elRef", ".", "current", ",", "config", ".", "terminalRenderer", "??", "\"canvas\"", ")", ";", "}", "}", "}", ",", "[", "]", ")", ";", "useEffect", "(", "(", ")", "=>", "{", "if", "(", "!", "config", ".", "enableTerminalTheme", ")", "{", "removeTheme", "(", ")", ";", "}", "setTheme", "(", ")", ";", "return", "(", ")", "=>", "{", "removeTheme", "(", ")", ";", "if", "(", "themeTimeout", ".", "current", ")", "{", "clearTimeout", "(", "themeTimeout", ".", "current", ")", ";", "}", "}", ";", "}", ",", "[", "theme", ",", "config", ",", "index", "]", ")", ";", "const", "handleResize", "=", "React", ".", "useCallback", "(", "(", ")", "=>", "{", "if", "(", "!", "terminal", "||", "!", "terminal", ".", "current", ")", "{", "return", ";", "}", "setTimeout", "(", "(", ")", "=>", "{", "terminal", ".", "current", "?.", "fitAddon", ".", "fit", "(", ")", ";", "}", ",", "0", ")", ";", "}", ",", "[", "]", ")", ";", "const", "handleResizeThrottled", "=", "React", ".", "useCallback", "(", "throttle", "(", "handleResize", ",", "50", ")", ",", "[", "]", ")", ";", "useEffect", "(", "(", ")", "=>", "{", "return", "containerWidth", ".", "onChange", "(", "(", ")", "=>", "{", "handleResizeThrottled", "(", ")", ";", "}", ")", ";", "}", ",", "[", "]", ")", ";", "return", "(", "<", "Resizable", "onResize", "=", "{", "handleResize", "}", "width", "=", "{", "containerWidth", "}", "height", "=", "{", "height", "}", ">", "<", "div", "ref", "=", "{", "elRef", "}", "style", "=", "{", "{", "marginTop", ":", "10", ",", "width", ":", "\"100%\"", ",", "height", ":", "\"100%\"", ",", "whiteSpace", ":", "\"pre-wrap\"", ",", "}", "}", "/>", "<", "/Resizable>);", "}", ")", ";", "export", "default", "CommandOutputXterm", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, null, 35, null, null, null, null, null, null, null, null, null, null, null, null, 7346, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660178
[ "import", "{", "Alert", ",", "Button", ",", "Collapse", ",", "H5", ",", "ResizeSensor", "}", "from", "\"@blueprintjs/core\"", ";", "import", "{", "useMotionValue", "}", "from", "\"framer-motion\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "JobTerminalManager", "from", "\"../shared/JobTerminalManager\"", ";", "import", "{", "configAtom", "}", "from", "\"../shared/state/atoms\"", ";", "import", "{", "ACTION_TYPES", ",", "useJobs", "}", "from", "\"../shared/stores/JobStore\"", ";", "import", "{", "useProjects", "}", "from", "\"../shared/stores/ProjectStore\"", ";", "import", "{", "useSockets", "}", "from", "\"../shared/stores/SocketStore\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "UpdateCommandDrawer", "from", "\"../UpdateCommandDrawer\"", ";", "import", "CommandOutputXterm", "from", "\"./CommandOutputXterm\"", ";", "const", "Container", "=", "styled", ".", "div", "`\n display: flex;\n flex-direction: column;\n /* overflow: auto;\n overflow-y: hidden; */\n`", ";", "const", "CommandTitleActions", "=", "styled", ".", "div", "`\n display: flex;\n max-width: 100%;\n justify-content: space-between;\n align-items: center;\n & > h5 {\n margin: 0 0 4px;\n }\n & > * {\n margin-left: 1rem;\n }\n`", ";", "const", "CommandOutputButtonsContainer", "=", "styled", ".", "div", "`\n display: flex;\n justify-content: space-around;\n flex-wrap: wrap;\n width: 15%;\n`", ";", "const", "CommandHeader", "=", "styled", ".", "div", "`\n display: flex;\n justify-content: space-between;\n align-items: center;\n`", ";", "interface", "ICommandProps", "{", "command", ":", "IProjectCommand", ";", "projectPath", ":", "string", ";", "projectId", ":", "string", ";", "index", ":", "number", ";", "}", "function", "getJobData", "(", "state", ",", "taskID", ")", "{", "return", "state", "[", "taskID", "]", "||", "\"\"", ";", "}", "const", "Command", "=", "React", ".", "memo", "(", "(", "{", "command", ",", "projectPath", ",", "index", ",", "projectId", "}", ")", "=>", "{", "const", "[", "isOutputOpen", ",", "setOutputOpen", "]", "=", "React", ".", "useState", "(", "true", ")", ";", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "const", "{", "subscribeToTaskSocket", ",", "unsubscribeFromTaskSocket", ",", "restartTask", "}", "=", "useSockets", "(", ")", ";", "const", "[", "isDrawerOpen", ",", "setDrawerOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "taskID", "=", "command", ".", "_id", ";", "const", "terminalManager", "=", "JobTerminalManager", ".", "getInstance", "(", ")", ";", "const", "{", "state", ":", "jobState", ",", "dispatch", "}", "=", "useJobs", "(", ")", ";", "const", "{", "activeProject", ",", "deleteTask", ",", "updateTask", "}", "=", "useProjects", "(", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "containerWidth", "=", "useMotionValue", "(", "0", ")", ";", "const", "[", "isDeleteAlertOpen", ",", "setIsDeleteAlertOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "deleteCommand", "=", "async", "(", ")", "=>", "{", "try", "{", "await", "deleteTask", "(", "activeProject", ".", "_id", ",", "taskID", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "console", ".", "error", "(", "\"Error deleting task\"", ")", ";", "}", "}", ";", "const", "updateJobProcess", "=", "(", "jobProcess", ")", "=>", "{", "dispatch", "(", "{", "taskID", ",", "type", ":", "ACTION_TYPES", ".", "UPDATE_JOB_PROCESS", ",", "process", ":", "jobProcess", ",", "}", ")", ";", "}", ";", "const", "clearJobOutput", "=", "(", ")", "=>", "{", "dispatch", "(", "{", "type", ":", "ACTION_TYPES", ".", "CLEAR_OUTPUT", ",", "taskID", ",", "}", ")", ";", "terminalManager", ".", "clearTerminalInRoom", "(", "taskID", ")", ";", "}", ";", "const", "startJob", "=", "(", ")", "=>", "{", "clearJobOutput", "(", ")", ";", "const", "shell", "=", "command", ".", "shell", "||", "activeProject", ".", "shell", "||", "config", ".", "shell", "||", "\"\"", ";", "subscribeToTaskSocket", "(", "taskID", ",", "command", ",", "projectPath", ",", "shell", ")", ";", "updateTask", "(", "projectId", ",", "command", ".", "_id", ",", "{", "...", "command", ",", "lastExecutedAt", ":", "new", "Date", "(", ")", ",", "}", ")", ";", "}", ";", "const", "stopJob", "=", "(", ")", "=>", "{", "const", "process", "=", "getJobData", "(", "jobState", ",", "taskID", ")", ".", "process", ";", "const", "{", "pid", "}", "=", "process", ";", "unsubscribeFromTaskSocket", "(", "taskID", ",", "pid", ")", ";", "updateJobProcess", "(", "{", "pid", ":", "-", "1", ",", "}", ")", ";", "}", ";", "const", "restartJob", "=", "(", ")", "=>", "{", "const", "shell", "=", "command", ".", "shell", "||", "activeProject", ".", "shell", "||", "config", ".", "shell", "||", "\"\"", ";", "const", "process", "=", "getJobData", "(", "jobState", ",", "taskID", ")", ".", "process", ";", "const", "{", "pid", "}", "=", "process", ";", "restartTask", "(", "taskID", ",", "pid", ",", "command", ",", "projectPath", ",", "shell", ")", ";", "updateJobProcess", "(", "{", "pid", ":", "-", "1", ",", "}", ")", ";", "clearJobOutput", "(", ")", ";", "updateTask", "(", "projectId", ",", "command", ".", "_id", ",", "{", "...", "command", ",", "lastExecutedAt", ":", "new", "Date", "(", ")", ",", "}", ")", ";", "}", ";", "const", "isProcessRunning", "=", "(", ")", ":", "boolean", "=>", "{", "return", "getJobData", "(", "jobState", ",", "taskID", ")", ".", "isRunning", "||", "false", ";", "}", ";", "return", "(", "<", "React", ".", "Fragment", ">", "<", "Container", ">", "<", "CommandHeader", ">", "<", "CommandTitleActions", ">", "<", "H5", "data", "-", "testid", "=", "\"command-name\"", ">", "{", "command", ".", "name", "}", "<", "/H5>", "{", "isProcessRunning", "(", ")", "?", "(", "<", "React", ".", "Fragment", ">", "<", "Button", "data", "-", "testid", "=", "\"stop-task-button\"", "intent", "=", "\"danger\"", "icon", "=", "\"stop\"", "minimal", "disabled", "=", "{", "!", "isProcessRunning", "(", ")", "}", "text", "=", "{", "\"Stop\"", "}", "onClick", "=", "{", "(", ")", "=>", "stopJob", "(", ")", "}", "/>", "<", "Button", "data", "-", "testid", "=", "\"restart-task-button\"", "intent", "=", "\"primary\"", "icon", "=", "\"refresh\"", "minimal", "disabled", "=", "{", "!", "isProcessRunning", "(", ")", "}", "text", "=", "{", "\"Restart\"", "}", "onClick", "=", "{", "(", ")", "=>", "restartJob", "(", ")", "}", "/>", "<", "/React.Fragment>) : (", "<", "Button", "data", "-", "testid", "=", "\"start-task-button\"", "icon", "=", "\"play\"", "intent", "=", "\"success\"", "minimal", "disabled", "=", "{", "isProcessRunning", "(", ")", "}", "text", "=", "{", "\"Start\"", "}", "onClick", "=", "{", "(", ")", "=>", "startJob", "(", ")", "}", "/>)}", "<", "/CommandTitleActions>", "<", "span", "data", "-", "testid", "=", "\"command-cmd\"", "className", "=", "\"truncate\"", "style", "=", "{", "{", "maxWidth", ":", "\"50%\"", "}", "}", "title", "=", "{", "command", ".", "cmd", "}", ">", "{", "command", ".", "cmd", "}", "<", "/span>", "<", "CommandOutputButtonsContainer", ">", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "setDrawerOpen", "(", "true", ")", "}", "icon", "=", "\"edit\"", "minimal", "=", "{", "true", "}", "title", "=", "\"Edit Task\"", "/", ">", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "clearJobOutput", "(", ")", "}", "icon", "=", "\"eraser\"", "minimal", "=", "{", "true", "}", "title", "=", "\"Clear Output\"", "/", ">", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "setOutputOpen", "(", "!", "isOutputOpen", ")", "}", "icon", "=", "{", "isOutputOpen", "?", "\"eye-off\"", ":", "\"eye-open\"", "}", "minimal", "=", "{", "true", "}", "title", "=", "{", "isOutputOpen", "?", "\"Hide Output\"", ":", "\"Show Output\"", "}", "/", ">", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "setIsDeleteAlertOpen", "(", "true", ")", "}", "icon", "=", "\"trash\"", "minimal", "=", "{", "true", "}", "data", "-", "testid", "=", "\"delete-task-button\"", "title", "=", "{", "isProcessRunning", "(", ")", "?", "\"Cannot delete while task is running.\"", ":", "\"Delete Task\"", "}", "intent", "=", "\"danger\"", "disabled", "=", "{", "isProcessRunning", "(", ")", "}", "/", ">", "<", "/CommandOutputButtonsContainer>", "<", "/CommandHeader>", "<", "Collapse", "isOpen", "=", "{", "isOutputOpen", "}", "keepChildrenMounted", "=", "{", "true", "}", ">", "<", "ResizeSensor", "onResize", "=", "{", "(", "entries", ")", "=>", "{", "const", "width", "=", "entries", "[", "0", "]", ".", "contentRect", ".", "width", ";", "containerWidth", ".", "set", "(", "width", ")", ";", "}", "}", ">", "<", "CommandOutputXterm", "index", "=", "{", "index", "}", "taskID", "=", "{", "taskID", "}", "containerWidth", "=", "{", "containerWidth", "}", "/", ">", "<", "/ResizeSensor>", "<", "/Collapse>", "<", "/Container>", "<", "UpdateCommandDrawer", "isDrawerOpen", "=", "{", "isDrawerOpen", "}", "setDrawerOpen", "=", "{", "setDrawerOpen", "}", "command", "=", "{", "command", "}", "/", ">", "<", "Alert", "cancelButtonText", "=", "\"Cancel\"", "confirmButtonText", "=", "\"Yes, Delete\"", "className", "=", "{", "theme", "}", "icon", "=", "\"trash\"", "intent", "=", "\"danger\"", "isOpen", "=", "{", "isDeleteAlertOpen", "}", "onCancel", "=", "{", "(", ")", "=>", "setIsDeleteAlertOpen", "(", "false", ")", "}", "onConfirm", "=", "{", "(", ")", "=>", "deleteCommand", "(", ")", "}", ">", "<", "p", "data", "-", "testid", "=", "\"delete-task-warning\"", ">", "Are", "you", "sure", "you", "want", "to", "delete", "task", "<", "b", ">", "{", "command", ".", "name", "}", "<", "/b>?", "<", "/p>", "<", "/Alert>", "<", "/React.Fragment>);", "}", ")", ";", "export", "default", "Command", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, 7346, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660179
[ "import", "{", "Card", ",", "Elevation", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "Command", "from", "\"../Command/Command\"", ";", "interface", "ICommandsRowViewProps", "{", "commands", ":", "IProjectCommand", "[", "]", ";", "activeProject", ":", "IProject", ";", "}", "const", "CommandsRowView", "=", "(", "{", "commands", ",", "activeProject", ",", "}", ")", "=>", "{", "return", "(", "<", "React", ".", "Fragment", ">", "{", "commands", ".", "map", "(", "(", "command", ",", "index", ")", "=>", "{", "return", "(", "<", "Card", "id", "=", "{", "`task-card-${", "command", ".", "_id", "}`", "}", "key", "=", "{", "command", ".", "_id", "}", "elevation", "=", "{", "Elevation", ".", "ONE", "}", "style", "=", "{", "{", "margin", ":", "20", ",", "padding", ":", "\"15px 15px 10px 15px\"", "}", "}", ">", "<", "Command", "index", "=", "{", "index", "}", "projectPath", "=", "{", "activeProject", ".", "path", "}", "projectId", "=", "{", "activeProject", ".", "_id", "}", "command", "=", "{", "command", "}", "/", ">", "<", "/Card>);", "}", ")", "}", "<", "/React.Fragment>);", "}", ";", "export", "default", "CommandsRowView", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660180
[ "import", "React", "from", "\"react\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "CommandsRowView", "from", "\"./CommandsRowView\"", ";", "interface", "ICommandsAreaProps", "{", "activeProject", ":", "IProject", ";", "}", "const", "Container", "=", "styled", ".", "div", "`\n height: calc(100% - 50px);\n overflow: auto;\n`", ";", "const", "EmptyContainer", "=", "styled", ".", "div", "`\n height: calc(100% - 50px);\n overflow: auto;\n display: flex;\n justify-content: center;\n align-items: center;\n font-size: 2em;\n & > span {\n padding: 10px;\n border-bottom: 1px solid #0a6640;\n }\n`", ";", "const", "CommandsArea", "=", "React", ".", "memo", "(", "(", "{", "activeProject", "}", ")", "=>", "{", "const", "commands", "=", "activeProject", ".", "commands", ";", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "if", "(", "commands", ".", "length", "===", "0", ")", "{", "return", "(", "<", "EmptyContainer", "theme", "=", "{", "theme", "}", "className", "=", "\"main-container\"", "data", "-", "testid", "=", "\"no-tasks-message\"", ">", "Add", "a", "task", "using", "<", "span", ">", "New", "Task", "<", "/span> button", "<", "/EmptyContainer>);", "}", "return", "(", "<", "Container", ">", "<", "CommandsRowView", "commands", "=", "{", "commands", "}", "activeProject", "=", "{", "activeProject", "}", "/", ">", "{", "}", "{", "}", "<", "/Container>);", "}", ")", ";", "export", "default", "CommandsArea", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660181
[ "export", "function", "getYesterday", "(", ")", "{", "const", "yesterday", "=", "new", "Date", "(", ")", ";", "yesterday", ".", "setDate", "(", "yesterday", ".", "getDate", "(", ")", "-", "1", ")", ";", "return", "yesterday", ";", "}" ]
[ null, null, 26, null, null, null, null, 26, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660182
[ "import", "{", "Button", ",", "FormGroup", ",", "InputGroup", "}", "from", "\"@blueprintjs/core\"", ";", "import", "{", "Formik", "}", "from", "\"formik\"", ";", "import", "React", ",", "{", "useState", "}", "from", "\"react\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "{", "v4", "as", "uuidv4", "}", "from", "\"uuid\"", ";", "import", "{", "getYesterday", "}", "from", "\"../../utils/general\"", ";", "import", "{", "isValidPath", "}", "from", "\"../../utils/node\"", ";", "import", "{", "configAtom", "}", "from", "\"../shared/state/atoms\"", ";", "import", "{", "useProjects", "}", "from", "\"../shared/stores/ProjectStore\"", ";", "const", "initialCommand", "=", "{", "_id", ":", "\"\"", ",", "name", ":", "\"\"", ",", "execDir", ":", "\"\"", ",", "cmd", ":", "\"\"", ",", "lastExecutedAt", ":", "getYesterday", "(", ")", ",", "shell", ":", "\"\"", ",", "}", ";", "const", "Container", "=", "styled", ".", "div", "`\n height: 100%;\n overflow: auto;\n`", ";", "interface", "INewProjectFormProps", "{", "setDrawerOpen", ":", "(", "isOpen", ":", "boolean", ")", "=>", "any", ";", "}", "const", "NewProjectForm", "=", "React", ".", "memo", "(", "(", "{", "setDrawerOpen", "}", ")", "=>", "{", "const", "{", "activeProject", ",", "addTask", "}", "=", "useProjects", "(", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "[", "errors", ",", "setErrors", "]", "=", "useState", "<", "any", ">", "(", "{", "path", ":", "\"\"", ",", "}", ")", ";", "const", "validatePath", "=", "async", "(", "value", ")", "=>", "{", "try", "{", "let", "error", "=", "\"\"", ";", "if", "(", "!", "value", ")", "{", "return", "\"\"", ";", "}", "const", "isPathValid", "=", "await", "isValidPath", "(", "config", ",", "value", ")", ";", "if", "(", "!", "isPathValid", ")", "{", "error", "=", "\"This path doesn't exist. You can leave path empty.\"", ";", "}", "return", "error", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "}", "}", ";", "const", "handleSubmit", "=", "async", "(", "values", ",", "actions", ")", ":", "Promise", "<", "any", ">", "=>", "{", "try", "{", "const", "newCommand", "=", "{", "...", "values", ",", "_id", ":", "uuidv4", "(", ")", ",", "}", ";", "const", "pathError", "=", "await", "validatePath", "(", "newCommand", ".", "execDir", ")", ";", "const", "shellError", "=", "await", "validatePath", "(", "newCommand", ".", "shell", ")", ";", "if", "(", "pathError", "||", "shellError", ")", "{", "actions", ".", "setSubmitting", "(", "false", ")", ";", "setErrors", "(", "{", "path", ":", "pathError", ",", "shell", ":", "shellError", ",", "}", ")", ";", "return", ";", "}", "actions", ".", "setSubmitting", "(", "true", ")", ";", "await", "addTask", "(", "activeProject", ".", "_id", ",", "newCommand", ")", ";", "actions", ".", "setSubmitting", "(", "false", ")", ";", "setDrawerOpen", "(", "false", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "error", ")", ";", "actions", ".", "setSubmitting", "(", "false", ")", ";", "}", "}", ";", "return", "(", "<", "Container", ">", "<", "Formik", "initialValues", "=", "{", "initialCommand", "}", "onSubmit", "=", "{", "handleSubmit", "}", "render", "=", "{", "(", "props", ")", "=>", "(", "<", "form", "onSubmit", "=", "{", "props", ".", "handleSubmit", "}", "data", "-", "testid", "=", "\"new-task-form\"", ">", "<", "FormGroup", "label", "=", "\"Name\"", "labelFor", "=", "\"name\"", "helperText", "=", "\"A short name for your task.\"", ">", "<", "InputGroup", "required", "=", "{", "true", "}", "placeholder", "=", "\"E.g., Start DB\"", "id", "=", "\"name\"", "type", "=", "\"text\"", "onChange", "=", "{", "props", ".", "handleChange", "}", "value", "=", "{", "props", ".", "values", ".", "name", "}", "autoFocus", "/", ">", "<", "/FormGroup>", "<", "FormGroup", "label", "=", "\"Task\"", "labelFor", "=", "\"cmd\"", "helperText", "=", "\"Actual task to run in terminal.\"", ">", "<", "InputGroup", "required", "=", "{", "true", "}", "id", "=", "\"cmd\"", "type", "=", "\"text\"", "placeholder", "=", "\"e.g., yarn test\"", "onChange", "=", "{", "props", ".", "handleChange", "}", "value", "=", "{", "props", ".", "values", ".", "cmd", "}", "/", ">", "<", "/FormGroup>", "<", "FormGroup", "label", "=", "\"Path (optional)\"", "labelFor", "=", "\"execDir\"", "intent", "=", "{", "errors", ".", "path", "?", "\"danger\"", ":", "\"none\"", "}", "helperText", "=", "{", "errors", ".", "path", "?", "(", "errors", ".", "path", ")", ":", "(", "<", "span", ">", "Use", "this", "{", "\" \"", "}", "<", "b", ">", "<", "i", ">", "only", "<", "/i>", "<", "/b>{\" \"}", "when", "task", "path", "is", "different", "from", "the", "project", "path", ".", "<", "/span>)}>", "<", "InputGroup", "placeholder", "=", "\"E.g., Absolute path where to execute the task.\"", "id", "=", "\"execDir\"", "type", "=", "\"text\"", "onChange", "=", "{", "props", ".", "handleChange", "}", "value", "=", "{", "props", ".", "values", ".", "execDir", "}", "/", ">", "<", "/FormGroup>", "<", "FormGroup", "label", "=", "\"Shell (optional)\"", "labelFor", "=", "\"shell\"", "intent", "=", "{", "errors", ".", "shell", "?", "\"danger\"", ":", "\"none\"", "}", "helperText", "=", "{", "errors", ".", "shell", "?", "(", "errors", ".", "shell", ")", ":", "(", "<", "span", ">", "Absolute", "path", "to", "the", "shell", ".", "Overrides", "project", "&", "apos", ";", "s", "shell", "or", "global", "shell", ".", "<", "/span>)}>", "<", "InputGroup", "placeholder", "=", "{", "navigator", ".", "platform", ".", "toLowerCase", "(", ")", "===", "\"win32\"", "?", "\"C:\\\\Windows\\\\System32\\\\cmd.exe\"", ":", "\"/bin/sh\"", "}", "id", "=", "\"shell\"", "type", "=", "\"text\"", "onChange", "=", "{", "props", ".", "handleChange", "}", "value", "=", "{", "props", ".", "values", ".", "shell", "}", "/", ">", "<", "/FormGroup>", "<", "FormGroup", ">", "<", "Button", "data", "-", "testid", "=", "\"save-task-button\"", "intent", "=", "\"primary\"", "text", "=", "\"Save Task\"", "type", "=", "\"submit\"", "loading", "=", "{", "props", ".", "isSubmitting", "}", "large", "=", "{", "true", "}", "/", ">", "<", "/FormGroup>", "<", "/form>)}/", ">", "<", "/Container>);", "}", ")", ";", "export", "default", "NewProjectForm", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660183
[ "import", "{", "Drawer", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "NewCommandForm", "from", "\"./NewCommandForm\"", ";", "const", "DrawerContainer", "=", "styled", ".", "div", "`\n height: 100%;\n padding: 2.5em;\n`", ";", "interface", "INewDrawerProps", "{", "isDrawerOpen", ":", "boolean", ";", "setDrawerOpen", ":", "(", "isOpen", ":", "boolean", ")", "=>", "any", ";", "}", "const", "NewCommandDrawer", "=", "React", ".", "memo", "(", "(", "{", "isDrawerOpen", ",", "setDrawerOpen", "}", ")", "=>", "{", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "return", "(", "<", "Drawer", "className", "=", "{", "theme", "}", "isOpen", "=", "{", "isDrawerOpen", "}", "title", "=", "\"Add Task\"", "onClose", "=", "{", "(", ")", "=>", "setDrawerOpen", "(", "false", ")", "}", ">", "<", "DrawerContainer", ">", "<", "NewCommandForm", "setDrawerOpen", "=", "{", "setDrawerOpen", "}", "/>", "<", "/DrawerContainer>", "<", "/Drawer>);", "}", ")", ";", "export", "default", "NewCommandDrawer", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660184
[ "import", "{", "Button", ",", "FormGroup", ",", "InputGroup", "}", "from", "\"@blueprintjs/core\"", ";", "import", "{", "useFormik", "}", "from", "\"formik\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../utils/electron\"", ";", "interface", "IProjectFormProps", "{", "initialValues", ":", "IProject", ";", "onSubmit", ":", "(", "values", ":", "IProject", ")", "=>", "Promise", "<", "any", ">", ";", "validate", ":", "(", "values", ":", "IProject", ")", "=>", "Promise", "<", "Partial", "<", "IProject", ">", ">", ";", "}", "const", "ProjectForm", "=", "(", "{", "initialValues", ",", "onSubmit", ",", "validate", ",", "}", ")", "=>", "{", "const", "formik", "=", "useFormik", "(", "{", "initialValues", ",", "onSubmit", ",", "validate", ",", "}", ")", ";", "const", "{", "errors", ",", "handleSubmit", ",", "isValid", ",", "isSubmitting", ",", "getFieldProps", ",", "dirty", "}", "=", "formik", ";", "return", "(", "<", "React", ".", "Fragment", ">", "<", "form", "data", "-", "testid", "=", "\"new-project-form\"", "onSubmit", "=", "{", "handleSubmit", "}", ">", "<", "FormGroup", "label", "=", "\"Project Name\"", "labelFor", "=", "\"name\"", "intent", "=", "{", "errors", ".", "name", "?", "\"danger\"", ":", "\"none\"", "}", "helperText", "=", "{", "errors", ".", "name", "?", "errors", ".", "name", ":", "\"Will be auto-filled if you are using a package.json. Otherwise, choose a name.\"", "}", ">", "<", "InputGroup", "id", "=", "\"name\"", "type", "=", "\"text\"", "required", "=", "{", "true", "}", "placeholder", "=", "\"My Awesome Project\"", "autoFocus", "{", "...", "getFieldProps", "(", "\"name\"", ")", "}", "/>", "<", "/FormGroup>", "<", "FormGroup", "label", "=", "\"Project Path\"", "labelFor", "=", "\"path\"", "intent", "=", "{", "errors", ".", "path", "?", "\"danger\"", ":", "\"none\"", "}", "helperText", "=", "{", "errors", ".", "path", "?", "(", "errors", ".", "path", ")", ":", "isRunningInElectron", "(", ")", "?", "(", "\"Absolute path to the project directory. Will be auto-filled if a package.json uploaded.\"", ")", ":", "(", "<", "span", ">", "Absolute", "path", "to", "the", "project", "directory", ".", "Will", "be", "auto", "-", "filled", "if", "{", "\" \"", "}", "<", "i", ">", "tenHands", ".", "path", "<", "/i> exists in package.json.", "<", "/span>)}>", "<", "InputGroup", "required", "=", "{", "true", "}", "id", "=", "\"path\"", "type", "=", "\"text\"", "placeholder", "=", "{", "navigator", ".", "platform", ".", "toLowerCase", "(", ")", "===", "\"win32\"", "?", "\"D:\\\\AllProjects\\\\MyProjectDirectory\"", ":", "\"/home/all-projects/my-project\"", "}", "{", "...", "getFieldProps", "(", "\"path\"", ")", "}", "/>", "<", "/FormGroup>", "<", "FormGroup", "label", "=", "\"Shell (Optional)\"", "labelFor", "=", "\"shell\"", "intent", "=", "{", "errors", ".", "shell", "?", "\"danger\"", ":", "\"none\"", "}", "helperText", "=", "{", "errors", ".", "shell", "?", "(", "errors", ".", "shell", ")", ":", "(", "<", "span", ">", "Absolute", "path", "to", "the", "shell", ".", "<", "b", ">", "Default", ":", "<", "/b>{\" \"}", "<", "pre", "className", "=", "\"pre-inline\"", ">", "cmd", ".", "exe", "<", "/pre> on Windows and{\" \"}", "<", "pre", "className", "=", "\"pre-inline\"", ">", "/bin/sh", "<", "/pre> on unix.", "<", "/span>)}>", "<", "InputGroup", "id", "=", "\"shell\"", "type", "=", "\"text\"", "placeholder", "=", "{", "navigator", ".", "platform", ".", "toLowerCase", "(", ")", "===", "\"win32\"", "?", "\"C:\\\\Windows\\\\System32\\\\cmd.exe\"", ":", "\"/bin/sh\"", "}", "{", "...", "getFieldProps", "(", "\"shell\"", ")", "}", "/>", "<", "/FormGroup>", "<", "FormGroup", ">", "<", "Button", "data", "-", "testid", "=", "\"save-project-button\"", "intent", "=", "\"primary\"", "text", "=", "\"Save Project\"", "type", "=", "\"submit\"", "loading", "=", "{", "isSubmitting", "}", "disabled", "=", "{", "!", "isValid", "||", "!", "dirty", "}", "large", "=", "{", "true", "}", "/", ">", "<", "/FormGroup>", "<", "/form>", "<", "/React.Fragment>);", "}", ";", "export", "default", "ProjectForm", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660185
[ "export", "const", "hasProjectWithSameName", "=", "(", "projects", ",", "newProjectName", ")", ":", "boolean", "=>", "{", "const", "existingNames", "=", "projects", ".", "map", "(", "(", "project", ")", "=>", "project", ".", "name", ".", "toLowerCase", "(", ")", ")", ";", "const", "hasProject", "=", "existingNames", ".", "includes", "(", "newProjectName", ".", "toLowerCase", "(", ")", ")", ";", "return", "hasProject", ";", "}", ";", "export", "const", "hasDifferentProjectWithSameName", "=", "(", "projects", ",", "newProjectName", ",", "thisProject", ")", ":", "boolean", "=>", "{", "const", "otherProjects", "=", "projects", ".", "filter", "(", "(", "project", ")", "=>", "project", ".", "_id", "!==", "thisProject", ".", "_id", ")", ";", "const", "existingNames", "=", "otherProjects", ".", "map", "(", "(", "project", ")", "=>", "project", ".", "name", ".", "toLowerCase", "(", ")", ")", ";", "const", "hasProject", "=", "existingNames", ".", "includes", "(", "newProjectName", ".", "toLowerCase", "(", ")", ")", ";", "return", "hasProject", ";", "}", ";" ]
[ null, null, 8, null, null, 5, null, 2, null, null, null, null, null, null, 5, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, 5, null, 2, null, 1128, null, null, null, null, null, null, 5, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660186
[ "import", "{", "isValidPath", "}", "from", "\"../../utils/node\"", ";", "import", "{", "hasDifferentProjectWithSameName", "}", "from", "\"../../utils/projects\"", ";", "export", "async", "function", "validateEditProjectForm", "(", "values", ",", "allProjects", ",", "thisProject", ",", "config", ")", "{", "const", "errors", "=", "{", "}", ";", "if", "(", "!", "values", ".", "name", ")", "{", "errors", ".", "name", "=", "\"Cannot be empty.\"", ";", "}", "else", "if", "(", "hasDifferentProjectWithSameName", "(", "allProjects", ",", "values", ".", "name", ",", "thisProject", ")", ")", "{", "errors", ".", "name", "=", "\"Project name already exists.\"", ";", "}", "if", "(", "!", "values", ".", "path", ")", "{", "errors", ".", "path", "=", "\"Cannot be empty.\"", ";", "}", "else", "if", "(", "!", "(", "await", "isValidPath", "(", "config", ",", "values", ".", "path", ")", ")", ")", "{", "errors", ".", "path", "=", "\"This path doesn't exist.\"", ";", "}", "if", "(", "values", ".", "shell", "&&", "!", "(", "await", "isValidPath", "(", "config", ",", "values", ".", "shell", ")", ")", ")", "{", "errors", ".", "shell", "=", "\"This path doesn't exist.\"", ";", "}", "return", "errors", ";", "}" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, 1128, null, 5, null, 1128, null, 866, null, null, null, 20, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660187
[ "import", "React", ",", "{", "useCallback", ",", "useMemo", "}", "from", "\"react\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "{", "configAtom", "}", "from", "\"../shared/state/atoms\"", ";", "import", "{", "useProjects", "}", "from", "\"../shared/stores/ProjectStore\"", ";", "import", "EditProjectForm", "from", "\"./EditProjectForm\"", ";", "import", "{", "validateEditProjectForm", "}", "from", "\"./project-form-validators\"", ";", "interface", "IEditProjectFormContainerProps", "{", "activeProject", ":", "IProject", ";", "setDrawerOpen", ":", "(", "isOpen", ":", "boolean", ")", "=>", "any", ";", "}", "const", "EditProjectFormContainer", "=", "(", "{", "activeProject", ",", "setDrawerOpen", ",", "}", ")", "=>", "{", "const", "{", "projects", ",", "updateProject", "}", "=", "useProjects", "(", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "initialValues", "=", "useMemo", "(", "(", ")", "=>", "(", "{", "...", "activeProject", ",", "}", ")", ",", "[", "activeProject", "]", ")", ";", "const", "onSubmit", "=", "useCallback", "(", "async", "(", "values", ")", ":", "Promise", "<", "any", ">", "=>", "{", "try", "{", "await", "updateProject", "(", "values", ".", "_id", ",", "values", ")", ";", "setDrawerOpen", "(", "false", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "`onSubmit error: `", ",", "error", ")", ";", "}", "}", ",", "[", "updateProject", ",", "setDrawerOpen", "]", ")", ";", "const", "validate", "=", "useCallback", "(", "async", "(", "values", ")", ":", "Promise", "<", "Partial", "<", "IProject", ">", ">", "=>", "{", "const", "errors", "=", "await", "validateEditProjectForm", "(", "values", ",", "projects", ",", "activeProject", ",", "config", ")", ";", "return", "errors", ";", "}", ",", "[", "activeProject", ",", "config", ",", "projects", "]", ")", ";", "const", "formProps", "=", "React", ".", "useMemo", "(", "(", ")", "=>", "(", "{", "initialValues", ",", "validate", ",", "onSubmit", ",", "}", ")", ",", "[", "initialValues", ",", "validate", ",", "onSubmit", "]", ")", ";", "return", "(", "<", "React", ".", "Fragment", ">", "<", "EditProjectForm", "{", "...", "formProps", "}", "/", ">", "<", "/React.Fragment>);", "}", ";", "export", "default", "EditProjectFormContainer", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 6, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660188
[ "import", "{", "Drawer", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "EditProjectFormContainer", "from", "\"./EditProjectFormContainer\"", ";", "const", "DrawerContainer", "=", "styled", ".", "div", "`\n height: 100%;\n padding: 2.5em;\n`", ";", "interface", "IEditProjectDrawerProps", "{", "isDrawerOpen", ":", "boolean", ";", "setDrawerOpen", ":", "(", "isOpen", ":", "boolean", ")", "=>", "any", ";", "activeProject", ":", "IProject", ";", "}", "const", "EditProjectDrawer", "=", "React", ".", "memo", "(", "(", "{", "isDrawerOpen", ",", "setDrawerOpen", ",", "activeProject", "}", ")", "=>", "{", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "return", "(", "<", "Drawer", "className", "=", "{", "theme", "}", "isOpen", "=", "{", "isDrawerOpen", "}", "title", "=", "\"Add Project\"", "onClose", "=", "{", "(", ")", "=>", "setDrawerOpen", "(", "false", ")", "}", ">", "<", "DrawerContainer", ">", "<", "EditProjectFormContainer", "activeProject", "=", "{", "activeProject", "}", "setDrawerOpen", "=", "{", "setDrawerOpen", "}", "/", ">", "<", "/DrawerContainer>", "<", "/Drawer>);", "}", ")", ";", "export", "default", "EditProjectDrawer", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660189
[ "import", "{", "Icon", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "Draggable", ",", "DraggableProvided", "}", "from", "\"react-beautiful-dnd\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "interface", "ICommandsOrderListItemProps", "{", "command", ":", "IProjectCommand", ";", "index", ":", "number", ";", "}", "const", "CommandItem", "=", "styled", ".", "div", "`\n padding: 1em;\n display: flex;\n justify-content: space-between;\n user-select: none;\n &:hover {\n border: 1px dotted gray;\n }\n`", ";", "const", "CommandsOrderListItem", "=", "React", ".", "memo", "(", "(", "{", "command", ",", "index", "}", ")", "=>", "{", "return", "(", "<", "Draggable", "draggableId", "=", "{", "command", ".", "_id", "}", "index", "=", "{", "index", "}", ">", "{", "(", "provided", ")", "=>", "(", "<", "CommandItem", "{", "...", "provided", ".", "draggableProps", "}", "{", "...", "provided", ".", "dragHandleProps", "}", "ref", "=", "{", "provided", ".", "innerRef", "}", ">", "<", "span", "data", "-", "testid", "=", "\"reorder-task-list-item\"", ">", "{", "command", ".", "name", "}", "<", "/span>", "<", "Icon", "icon", "=", "{", "\"drag-handle-horizontal\"", "}", "/", ">", "<", "/CommandItem>)}", "<", "/Draggable>);", "}", ")", ";", "export", "default", "CommandsOrderListItem", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660190
[ "import", "React", "from", "\"react\"", ";", "import", "{", "Droppable", ",", "DroppableProvided", "}", "from", "\"react-beautiful-dnd\"", ";", "import", "CommandsOrderListItem", "from", "\"./CommandOrderListItem\"", ";", "interface", "ICommandsOrderListProps", "{", "commands", ":", "IProjectCommand", "[", "]", ";", "projectId", ":", "string", ";", "}", "const", "CommandsOrderList", "=", "React", ".", "memo", "(", "(", "{", "commands", ",", "projectId", "}", ")", "=>", "{", "if", "(", "commands", ".", "length", "===", "0", ")", "{", "return", "<", "div", ">", "No", "tasks", "in", "the", "project", ".", "<", "/div>;", "}", "return", "(", "<", "Droppable", "droppableId", "=", "{", "projectId", "}", ">", "{", "(", "provided", ")", "=>", "(", "<", "div", "ref", "=", "{", "provided", ".", "innerRef", "}", "{", "...", "provided", ".", "droppableProps", "}", ">", "{", "commands", ".", "map", "(", "(", "command", ",", "index", ")", "=>", "{", "return", "(", "<", "CommandsOrderListItem", "command", "=", "{", "command", "}", "key", "=", "{", "command", ".", "_id", "}", "index", "=", "{", "index", "}", "/", ">", ")", ";", "}", ")", "}", "{", "provided", ".", "placeholder", "}", "<", "/div>)}", "<", "/Droppable>);", "}", ")", ";", "export", "default", "CommandsOrderList", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660191
[ "import", "React", "from", "\"react\"", ";", "import", "{", "DragDropContext", ",", "DropResult", "}", "from", "\"react-beautiful-dnd\"", ";", "import", "{", "useProjects", "}", "from", "\"../shared/stores/ProjectStore\"", ";", "import", "CommandsOrderList", "from", "\"./CommandsOrderList\"", ";", "interface", "ICommandsOrderListContainerProps", "{", "activeProject", ":", "IProject", ";", "}", "const", "CommandOrderListContainer", "=", "React", ".", "memo", "(", "(", "{", "activeProject", "}", ")", "=>", "{", "const", "{", "reorderTasks", "}", "=", "useProjects", "(", ")", ";", "const", "[", "commands", ",", "setCommands", "]", "=", "React", ".", "useState", "(", "activeProject", ".", "commands", ")", ";", "const", "saveNewCommandsOrder", "=", "(", "reorderedCommands", ")", "=>", "{", "const", "save", "=", "async", "(", "commandsWithNewOrder", ")", "=>", "{", "try", "{", "console", ".", "info", "(", "\"Saving new commands order\"", ")", ";", "reorderTasks", "(", "activeProject", ".", "_id", ",", "commandsWithNewOrder", ",", "\"custom\"", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"Error Reordering:\"", ",", "error", ")", ";", "}", "}", ";", "save", "(", "reorderedCommands", ")", ";", "}", ";", "if", "(", "commands", ".", "length", "===", "0", ")", "{", "return", "<", "div", ">", "No", "commands", "in", "the", "project", ".", "<", "/div>;", "}", "const", "onDragEnd", "=", "(", "result", ")", "=>", "{", "const", "{", "destination", ",", "source", "}", "=", "result", ";", "if", "(", "!", "destination", ")", "{", "return", ";", "}", "if", "(", "destination", ".", "droppableId", "===", "source", ".", "droppableId", "&&", "destination", ".", "index", "===", "source", ".", "index", ")", "{", "return", ";", "}", "const", "newCommands", "=", "[", "...", "commands", "]", ";", "const", "sourceCommand", "=", "newCommands", "[", "source", ".", "index", "]", ";", "newCommands", ".", "splice", "(", "source", ".", "index", ",", "1", ")", ";", "newCommands", ".", "splice", "(", "destination", ".", "index", ",", "0", ",", "sourceCommand", ")", ";", "setCommands", "(", "newCommands", ")", ";", "saveNewCommandsOrder", "(", "newCommands", ")", ";", "}", ";", "return", "(", "<", "DragDropContext", "onDragEnd", "=", "{", "onDragEnd", "}", ">", "<", "CommandsOrderList", "commands", "=", "{", "commands", "}", "projectId", "=", "{", "activeProject", ".", "_id", "}", "/", ">", "<", "/DragDropContext>);", "}", ")", ";", "export", "default", "CommandOrderListContainer", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, 5, null, null, null, null, 7, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, 5690, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660192
[ "import", "{", "Menu", ",", "MenuDivider", ",", "MenuItem", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "interface", "IProjectMenuProps", "{", "setIsProjectDrawerOpen", ":", "(", "value", ":", "React", ".", "SetStateAction", "<", "boolean", ">", ")", "=>", "void", ";", "setCommandsOrderModalOpen", ":", "(", "value", ":", "React", ".", "SetStateAction", "<", "boolean", ">", ")", "=>", "void", ";", "setDeleteAlertOpen", ":", "(", "value", ":", "React", ".", "SetStateAction", "<", "boolean", ">", ")", "=>", "void", ";", "activeProject", ":", "IProject", ";", "projectsRunningTaskCount", ":", "{", "[", "key", "]", ":", "number", ";", "}", ";", "}", "const", "ProjectMenu", "=", "(", "{", "setIsProjectDrawerOpen", ",", "setCommandsOrderModalOpen", ",", "setDeleteAlertOpen", ",", "activeProject", ",", "projectsRunningTaskCount", ",", "}", ")", "=>", "{", "return", "(", "<", "React", ".", "Fragment", ">", "<", "Menu", "key", "=", "\"menu\"", ">", "<", "MenuDivider", "title", "=", "\"Edit\"", "/", ">", "<", "MenuItem", "data", "-", "testid", "=", "\"edit-project-menu-item\"", "icon", "=", "\"edit\"", "text", "=", "\"Edit Project\"", "onClick", "=", "{", "(", ")", "=>", "setIsProjectDrawerOpen", "(", "true", ")", "}", "/>", "<", "MenuDivider", "title", "=", "\"Layout\"", "/", ">", "<", "MenuItem", "data", "-", "testid", "=", "\"change-tasks-order-menu-item\"", "icon", "=", "\"sort\"", "text", "=", "\"Change Tasks Order\"", "onClick", "=", "{", "(", ")", "=>", "setCommandsOrderModalOpen", "(", "true", ")", "}", "/>", "<", "MenuDivider", "title", "=", "\"Danger\"", "/", ">", "<", "MenuItem", "data", "-", "testid", "=", "\"delete-project-menu-item\"", "icon", "=", "\"trash\"", "text", "=", "\"Delete Project\"", "intent", "=", "\"danger\"", "onClick", "=", "{", "(", ")", "=>", "setDeleteAlertOpen", "(", "true", ")", "}", "title", "=", "{", "projectsRunningTaskCount", "[", "activeProject", ".", "_id", "]", ">", "0", "?", "\"Cannot delete project while tasks are running.\"", ":", "undefined", "}", "disabled", "=", "{", "projectsRunningTaskCount", "[", "activeProject", ".", "_id", "]", ">", "0", "}", "/", ">", "<", "/Menu>", "<", "/React.Fragment>);", "}", ";", "export", "default", "ProjectMenu", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660193
[ "import", "{", "Button", ",", "Dialog", ",", "HTMLSelect", ",", "Icon", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "getYesterday", "}", "from", "\"../../utils/general\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "CommandOrderListContainer", "from", "\"./CommandOrderListContainer\"", ";", "interface", "ISorterProps", "{", "reorderTasks", ":", "(", "projectId", ":", "string", ",", "newTasks", ":", "IProjectCommand", "[", "]", ",", "taskSortOrder", "?", ":", "TASK_SORT_ORDER", ")", "=>", "any", ";", "activeProject", ":", "IProject", ";", "}", "const", "Sorter", "=", "React", ".", "memo", "(", "(", "{", "reorderTasks", ",", "activeProject", "}", ")", "=>", "{", "const", "[", "tasksOrder", ",", "setTasksOrder", "]", "=", "React", ".", "useState", "<", "TASK_SORT_ORDER", ">", "(", "activeProject", ".", "taskSortOrder", "??", "\"name-asc\"", ")", ";", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "const", "[", "commandsOrderModalOpen", ",", "setCommandsOrderModalOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "sortTasksBy", "=", "React", ".", "useCallback", "(", "(", "order", "=", "\"name-asc\"", ")", "=>", "{", "setTimeout", "(", "(", ")", "=>", "{", "const", "tasksToSort", "=", "[", "...", "activeProject", ".", "commands", ",", "]", ".", "map", "(", "(", "command", ")", "=>", "{", "const", "{", "lastExecutedAt", "}", "=", "command", ";", "if", "(", "!", "lastExecutedAt", ")", "{", "return", "{", "...", "command", ",", "lastExecutedAt", ":", "getYesterday", "(", ")", ",", "}", ";", "}", "return", "command", ";", "}", ")", ";", "if", "(", "order", "===", "\"name-asc\"", ")", "{", "tasksToSort", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "name", ".", "toLowerCase", "(", ")", "<", "b", ".", "name", ".", "toLowerCase", "(", ")", "?", "-", "1", ":", "1", ")", ";", "}", "else", "if", "(", "order", "===", "\"name-desc\"", ")", "{", "tasksToSort", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "a", ".", "name", ".", "toLowerCase", "(", ")", "<", "b", ".", "name", ".", "toLowerCase", "(", ")", "?", "1", ":", "-", "1", ")", ";", "}", "else", "if", "(", "order", "===", "\"last-executed\"", ")", "{", "tasksToSort", ".", "sort", "(", "(", "a", ",", "b", ")", "=>", "new", "Date", "(", "a", ".", "lastExecutedAt", ")", ".", "getTime", "(", ")", "<", "new", "Date", "(", "b", ".", "lastExecutedAt", ")", ".", "getTime", "(", ")", "?", "1", ":", "-", "1", ")", ";", "}", "reorderTasks", "(", "activeProject", ".", "_id", ",", "tasksToSort", ",", "order", ")", ";", "}", ",", "0", ")", ";", "}", ",", "[", "activeProject", ",", "reorderTasks", "]", ")", ";", "const", "handleChangeOrderModalClose", "=", "(", ")", "=>", "{", "setCommandsOrderModalOpen", "(", "false", ")", ";", "}", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "if", "(", "tasksOrder", "===", "\"custom\"", ")", "{", "return", ";", "}", "sortTasksBy", "(", "tasksOrder", ")", ";", "}", ",", "[", "tasksOrder", "]", ")", ";", "React", ".", "useEffect", "(", "(", ")", "=>", "{", "console", ".", "log", "(", "\"Active Project Changed...\"", ")", ";", "console", ".", "log", "(", "\"activeProject, tasksOrder:\"", ",", "activeProject", ",", "tasksOrder", ")", ";", "if", "(", "activeProject", ".", "taskSortOrder", "!==", "tasksOrder", ")", "{", "if", "(", "!", "activeProject", ".", "taskSortOrder", ")", "{", "setTasksOrder", "(", "\"name-asc\"", ")", ";", "}", "else", "{", "setTasksOrder", "(", "activeProject", ".", "taskSortOrder", ")", ";", "}", "}", "}", ",", "[", "activeProject", "]", ")", ";", "return", "(", "<", "React", ".", "Fragment", ">", "Sort", "tasks", "by", ":", "<", "span", "style", "=", "{", "{", "paddingRight", ":", "10", "}", "}", ">", "<", "/span>", "<", "HTMLSelect", "value", "=", "{", "tasksOrder", "}", "onChange", "=", "{", "(", "e", ")", "=>", "{", "const", "order", "=", "e", ".", "target", ".", "value", "as", "TASK_SORT_ORDER", ";", "setTasksOrder", "(", "order", ")", ";", "if", "(", "order", "===", "\"custom\"", ")", "{", "setCommandsOrderModalOpen", "(", "true", ")", ";", "}", "}", "}", "options", "=", "{", "[", "{", "label", ":", "\"Name (A-Z)\"", ",", "value", ":", "\"name-asc\"", "}", ",", "{", "label", ":", "\"Name (Z-A)\"", ",", "value", ":", "\"name-desc\"", "}", ",", "{", "label", ":", "\"Last Executed\"", ",", "value", ":", "\"last-executed\"", "}", ",", "{", "label", ":", "\"Custom\"", ",", "value", ":", "\"custom\"", "}", ",", "]", "}", "/", ">", "<", "Button", "icon", "=", "{", "<", "Icon", "icon", "=", "\"refresh\"", "iconSize", "=", "{", "12", "}", "/", ">", "}", "intent", "=", "\"none\"", "minimal", "data", "-", "testid", "=", "\"refresh-task-sort-order\"", "small", "style", "=", "{", "{", "padding", ":", "5", ",", "marginLeft", ":", "2", "}", "}", "title", "=", "\"Click to refresh task sort order.\"", "onClick", "=", "{", "(", ")", "=>", "{", "sortTasksBy", "(", "tasksOrder", ")", ";", "if", "(", "tasksOrder", "===", "\"custom\"", ")", "{", "setCommandsOrderModalOpen", "(", "true", ")", ";", "}", "}", "}", "/>", "<", "Dialog", "title", "=", "\"Drag to set custom task order\"", "icon", "=", "{", "\"numbered-list\"", "}", "className", "=", "{", "theme", "}", "isOpen", "=", "{", "commandsOrderModalOpen", "}", "onClose", "=", "{", "handleChangeOrderModalClose", "}", ">", "<", "CommandOrderListContainer", "activeProject", "=", "{", "activeProject", "}", "/>", "<", "/Dialog>", "<", "/React.Fragment>);", "}", ")", ";", "export", "default", "Sorter", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 64, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660194
[ "import", "{", "Alert", ",", "Alignment", ",", "Button", ",", "Dialog", ",", "Icon", ",", "Navbar", ",", "Popover", ",", "Tooltip", ",", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "useQuery", "}", "from", "\"react-query\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "{", "isRunningInElectron", ",", "openInExplorer", "}", "from", "\"../../utils/electron\"", ";", "import", "NewCommandDrawer", "from", "\"../NewCommandDrawer\"", ";", "import", "EditProjectDrawer", "from", "\"../ProjectForm/EditProjectDrawer\"", ";", "import", "{", "getGitRepo", "}", "from", "\"../shared/API\"", ";", "import", "{", "configAtom", "}", "from", "\"../shared/state/atoms\"", ";", "import", "{", "useProjects", "}", "from", "\"../shared/stores/ProjectStore\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "import", "CommandOrderListContainer", "from", "\"./CommandOrderListContainer\"", ";", "import", "ProjectMenu", "from", "\"./ProjectMenu\"", ";", "import", "Sorter", "from", "\"./Sorter\"", ";", "interface", "IProjectTopbarProps", "{", "activeProject", ":", "IProject", ";", "}", "const", "GitBranchContainer", "=", "styled", ".", "div", "`\n display: flex;\n align-items: center;\n & > .git-branch-name {\n padding-left: 5px;\n padding-right: 5px;\n }\n`", ";", "const", "ProjectTopbar", "=", "React", ".", "memo", "(", "(", "{", "activeProject", "}", ")", "=>", "{", "const", "[", "isDeleteAlertOpen", ",", "setDeleteAlertOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "[", "commandsOrderModalOpen", ",", "setCommandsOrderModalOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "const", "[", "isDrawerOpen", ",", "setDrawerOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "[", "isProjectDrawerOpen", ",", "setIsProjectDrawerOpen", "]", "=", "React", ".", "useState", "<", "boolean", ">", "(", "false", ")", ";", "const", "config", "=", "useRecoilValue", "(", "configAtom", ")", ";", "const", "gitInfo", "=", "useQuery", "(", "[", "\"gitBranch\"", ",", "config", ",", "activeProject", "]", ",", "(", ")", "=>", "getGitRepo", "(", "config", ",", "activeProject", ".", "path", ")", ")", ";", "const", "{", "deleteProject", ",", "projectsRunningTaskCount", ",", "runAllStoppedTasks", ",", "stopAllRunningTasks", ",", "reorderTasks", ",", "}", "=", "useProjects", "(", ")", ";", "const", "shouldDeleteProject", "=", "async", "(", "shouldDelete", ")", "=>", "{", "try", "{", "if", "(", "shouldDelete", ")", "{", "deleteProject", "(", "activeProject", ".", "_id", ")", ";", "setDeleteAlertOpen", "(", "false", ")", ";", "}", "}", "catch", "(", "error", ")", "{", "console", ".", "error", "(", "`Error deleting project: `", ",", "error", ")", ";", "}", "}", ";", "const", "handleChangeOrderModalClose", "=", "(", ")", "=>", "{", "setCommandsOrderModalOpen", "(", "false", ")", ";", "}", ";", "return", "(", "<", "React", ".", "Fragment", ">", "<", "Navbar", ">", "<", "Navbar", ".", "Group", ">", "<", "Navbar", ".", "Heading", "data", "-", "testid", "=", "\"active-project-name\"", ">", "{", "activeProject", ".", "name", "}", "<", "/Navbar.Heading>", "{", "isRunningInElectron", "(", ")", "?", "(", "<", "Tooltip", "content", "=", "\"Open project in file explorer\"", ">", "<", "Button", "data", "-", "testid", "=", "\"open-project-directory-button\"", "icon", "=", "\"folder-shared-open\"", "minimal", "=", "{", "true", "}", "onClick", "=", "{", "(", ")", "=>", "openInExplorer", "(", "activeProject", ".", "path", ")", "}", "/>", "<", "/Tooltip>) : null}", "<", "Navbar", ".", "Heading", "data", "-", "testid", "=", "\"active-project-git-branch\"", ">", "{", "gitInfo", "?.", "isLoading", "?", "(", "\"loading...\"", ")", ":", "gitInfo", "?.", "data", "?.", "branch", "?", "(", "<", "GitBranchContainer", ">", "<", "Navbar", ".", "Divider", "style", "=", "{", "{", "paddingRight", ":", "10", "}", "}", "/>{\" \"}", "<", "Icon", "icon", "=", "\"git-branch\"", "/", ">", "{", "<", "span", "className", "=", "\"git-branch-name\"", ">", "{", "gitInfo", "?.", "data", "?.", "branch", "}", "<", "/span>}", "<", "/GitBranchContainer>) : null}", "<", "/Navbar.Heading>", "<", "/Navbar.Group>", "<", "Navbar", ".", "Group", ">", "<", "Navbar", ".", "Divider", "style", "=", "{", "{", "paddingRight", ":", "10", "}", "}", "/>{\" \"}", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "runAllStoppedTasks", "(", ")", "}", "icon", "=", "\"play\"", "intent", "=", "\"success\"", "text", "=", "\"Run All\"", "minimal", "=", "{", "true", "}", "data", "-", "testid", "=", "\"run-all-stopped-tasks\"", "title", "=", "{", "projectsRunningTaskCount", "[", "activeProject", ".", "_id", "]", "===", "activeProject", ".", "commands", ".", "length", "?", "\"All the tasks in the project are already running.\"", ":", "\"Runs all stopped tasks in this project.\"", "}", "disabled", "=", "{", "projectsRunningTaskCount", "[", "activeProject", ".", "_id", "]", "===", "activeProject", ".", "commands", ".", "length", "}", "/", ">", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "stopAllRunningTasks", "(", ")", "}", "icon", "=", "\"stop\"", "intent", "=", "\"danger\"", "text", "=", "\"Stop All\"", "minimal", "=", "{", "true", "}", "data", "-", "testid", "=", "\"stop-all-running-tasks\"", "title", "=", "{", "projectsRunningTaskCount", "[", "activeProject", ".", "_id", "]", "===", "0", "?", "\"No tasks are running in the project.\"", ":", "\"Stops all running tasks in this project.\"", "}", "disabled", "=", "{", "projectsRunningTaskCount", "[", "activeProject", ".", "_id", "]", "===", "0", "}", "/", ">", "<", "/Navbar.Group>", "<", "Navbar", ".", "Group", "align", "=", "{", "Alignment", ".", "LEFT", "}", ">", "<", "Navbar", ".", "Divider", "style", "=", "{", "{", "paddingRight", ":", "10", "}", "}", "/>", "<", "Sorter", "activeProject", "=", "{", "activeProject", "}", "reorderTasks", "=", "{", "reorderTasks", "}", "/", ">", "<", "/Navbar.Group>", "<", "Navbar", ".", "Group", "align", "=", "{", "Alignment", ".", "RIGHT", "}", ">", "<", "Button", "onClick", "=", "{", "(", ")", "=>", "setDrawerOpen", "(", "true", ")", "}", "icon", "=", "\"add\"", "intent", "=", "\"success\"", "text", "=", "\"New Task\"", "minimal", "=", "{", "true", "}", "data", "-", "testid", "=", "\"new-task-button\"", "/", ">", "<", "Navbar", ".", "Divider", "/>", "<", "Popover", "position", "=", "\"left-top\"", ">", "<", "Button", "icon", "=", "\"cog\"", "minimal", "=", "{", "true", "}", "data", "-", "testid", "=", "\"project-settings-button\"", "/", ">", "<", "ProjectMenu", "setIsProjectDrawerOpen", "=", "{", "setIsProjectDrawerOpen", "}", "setCommandsOrderModalOpen", "=", "{", "setCommandsOrderModalOpen", "}", "setDeleteAlertOpen", "=", "{", "setDeleteAlertOpen", "}", "activeProject", "=", "{", "activeProject", "}", "projectsRunningTaskCount", "=", "{", "projectsRunningTaskCount", "}", "/", ">", "<", "/Popover>", "<", "/Navbar.Group>", "<", "/Navbar>", "<", "Dialog", "title", "=", "\"Change Tasks Order\"", "icon", "=", "{", "\"numbered-list\"", "}", "className", "=", "{", "theme", "}", "isOpen", "=", "{", "commandsOrderModalOpen", "}", "onClose", "=", "{", "handleChangeOrderModalClose", "}", ">", "<", "CommandOrderListContainer", "activeProject", "=", "{", "activeProject", "}", "/>", "<", "/Dialog>", "<", "Alert", "cancelButtonText", "=", "\"Cancel\"", "confirmButtonText", "=", "\"Yes, Delete\"", "className", "=", "{", "theme", "}", "icon", "=", "\"trash\"", "intent", "=", "\"danger\"", "isOpen", "=", "{", "isDeleteAlertOpen", "}", "onCancel", "=", "{", "(", ")", "=>", "setDeleteAlertOpen", "(", "false", ")", "}", "onConfirm", "=", "{", "(", ")", "=>", "shouldDeleteProject", "(", "true", ")", "}", ">", "<", "p", "data", "-", "testid", "=", "\"delete-project-warning\"", ">", "Are", "you", "sure", "you", "want", "to", "delete", "project", "<", "b", ">", "{", "activeProject", ".", "name", "}", "<", "/b>?", "<", "/p>", "<", "/Alert>", "<", "NewCommandDrawer", "isDrawerOpen", "=", "{", "isDrawerOpen", "}", "setDrawerOpen", "=", "{", "setDrawerOpen", "}", "/", ">", "<", "EditProjectDrawer", "activeProject", "=", "{", "activeProject", "}", "isDrawerOpen", "=", "{", "isProjectDrawerOpen", "}", "setDrawerOpen", "=", "{", "setIsProjectDrawerOpen", "}", "/", ">", "<", "/React.Fragment>);", "}", ")", ";", "export", "default", "ProjectTopbar", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 866, null, null, null, null, null, null, null, 2048, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660195
[ "import", "{", "Classes", ",", "Colors", ",", "Spinner", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "import", "{", "useRecoilValue", "}", "from", "\"recoil\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "CommandsArea", "from", "\"../CommandsArea\"", ";", "import", "ProjectTopbar", "from", "\"../ProjectTopbar\"", ";", "import", "{", "activeProjectAtom", "}", "from", "\"../shared/state/atoms\"", ";", "import", "{", "useProjects", "}", "from", "\"../shared/stores/ProjectStore\"", ";", "import", "{", "useTheme", "}", "from", "\"../shared/stores/ThemeStore\"", ";", "const", "Container", "=", "styled", ".", "div", "`\n border-top: 1px solid transparent; /* To prevent margin-collapse for first child doesn't happen */\n background: ${", "(", "props", ")", "=>", "props", ".", "theme", "===", "Classes", ".", "DARK", "?", "Colors", ".", "DARK_GRAY1", ":", "Colors", ".", "LIGHT_GRAY1", "};\n height: 100%;\n max-width: 100%;\n display: flex;\n flex-direction: column;\n`", ";", "const", "EmptyContainer", "=", "styled", ".", "div", "`\n border-top: 1px solid transparent; /* To prevent margin-collapse for first child doesn't happen */\n background: ${", "(", "props", ")", "=>", "props", ".", "theme", "===", "Classes", ".", "DARK", "?", "Colors", ".", "DARK_GRAY1", ":", "Colors", ".", "LIGHT_GRAY1", "};\n height: 100%;\n max-width: 100%;\n display: flex;\n flex-direction: column;\n display: flex;\n justify-content: center;\n align-items: center;\n font-size: 2em;\n & > span {\n padding: 10px;\n border-bottom: 1px solid #0a6640;\n }\n`", ";", "const", "Main", "=", "React", ".", "memo", "(", "(", ")", "=>", "{", "const", "{", "theme", "}", "=", "useTheme", "(", ")", ";", "const", "{", "loadingProjects", ",", "projects", "}", "=", "useProjects", "(", ")", ";", "const", "activeProject", "=", "useRecoilValue", "(", "activeProjectAtom", ")", ";", "if", "(", "loadingProjects", ")", "{", "return", "(", "<", "EmptyContainer", "theme", "=", "{", "theme", "}", "className", "=", "\"main-container\"", ">", "<", "Spinner", "/>", "<", "/EmptyContainer>);", "}", "if", "(", "!", "projects", "||", "projects", ".", "length", "===", "0", ")", "{", "return", "(", "<", "EmptyContainer", "theme", "=", "{", "theme", "}", "className", "=", "\"main-container\"", "data", "-", "testid", "=", "\"no-projects-message\"", ">", "Add", "a", "project", "using", "<", "span", ">", "New", "Project", "<", "/span> button", "<", "/EmptyContainer>);", "}", "return", "(", "<", "Container", "theme", "=", "{", "theme", "}", "className", "=", "\"main-container\"", ">", "<", "div", ">", "<", "ProjectTopbar", "activeProject", "=", "{", "activeProject", "}", "/>", "<", "/div>", "<", "CommandsArea", "activeProject", "=", "{", "activeProject", "}", "/", ">", "<", "/Container>);", "}", ")", ";", "export", "default", "Main", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, 62, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, 62, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 534, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660196
[ "import", "{", "atom", "}", "from", "\"recoil\"", ";", "import", "{", "getItem", ",", "setItem", "}", "from", "\"../../../utils/storage\"", ";", "let", "defaultSiderWidth", "=", "Number", "(", "getItem", "(", "\"sider-width\"", ")", ")", ";", "if", "(", "!", "defaultSiderWidth", "||", "defaultSiderWidth", "===", "0", "||", "Number", ".", "isNaN", "(", "defaultSiderWidth", ")", ")", "{", "setItem", "(", "\"sider-width\"", ",", "300", ")", ";", "defaultSiderWidth", "=", "300", ";", "}", "export", "const", "siderWidthAtom", "=", "atom", "<", "number", ">", "(", "{", "key", ":", "\"siderWidth\"", ",", "default", ":", "defaultSiderWidth", "??", "300", ",", "}", ")", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 3, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1664, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660197
[ "import", "{", "v4", "as", "uuidv4", "}", "from", "\"uuid\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../utils/electron\"", ";", "import", "{", "getYesterday", "}", "from", "\"../../utils/general\"", ";", "const", "nodeConfigFileParser", "=", "(", "file", ")", ":", "IProject", "|", "null", "=>", "{", "const", "project", "=", "{", "_id", ":", "uuidv4", "(", ")", ",", "name", ":", "\"\"", ",", "type", ":", "\"\"", ",", "commands", ":", "[", "]", ",", "path", ":", "\"\"", ",", "configFile", ":", "\"\"", ",", "}", ";", "try", "{", "if", "(", "!", "file", ".", "data", ")", "{", "return", "null", ";", "}", "let", "shouldRunWithYarn", "=", "false", ";", "project", ".", "configFile", "=", "file", ".", "name", ";", "if", "(", "!", "project", ".", "configFile", ".", "endsWith", "(", "\".json\"", ")", ")", "{", "return", "null", ";", "}", "const", "packageJsonData", "=", "JSON", ".", "parse", "(", "file", ".", "data", ".", "toString", "(", ")", ")", ";", "if", "(", "file", ".", "path", ")", "{", "project", ".", "path", "=", "file", ".", "path", ";", "}", "else", "if", "(", "packageJsonData", ".", "tenHands", ")", "{", "const", "userConfig", "=", "packageJsonData", ".", "tenHands", ";", "project", ".", "path", "=", "userConfig", ".", "path", "?", "userConfig", ".", "path", ":", "\"\"", ";", "}", "else", "{", "project", ".", "path", "=", "\"\"", ";", "}", "if", "(", "isRunningInElectron", "(", ")", ")", "{", "try", "{", "const", "fs", "=", "require", "(", "\"fs\"", ")", ";", "const", "path", "=", "require", "(", "\"path\"", ")", ";", "if", "(", "fs", ".", "existsSync", "(", "path", ".", "join", "(", "file", ".", "path", ",", "\"yarn.lock\"", ")", ")", ")", "{", "console", ".", "log", "(", "\"yarn.lock exists at file path. Using yarn to run scripts.\"", ")", ";", "shouldRunWithYarn", "=", "true", ";", "}", "else", "{", "console", ".", "log", "(", "\"yarn.lock doesn't exist at file path. Using npm to run scripts.\"", ")", ";", "shouldRunWithYarn", "=", "false", ";", "}", "}", "catch", "(", "err", ")", "{", "console", ".", "error", "(", "err", ")", ";", "shouldRunWithYarn", "=", "false", ";", "}", "}", "project", ".", "name", "=", "packageJsonData", ".", "name", ";", "project", ".", "type", "=", "\"nodejs\"", ";", "const", "scriptsInPackageJson", "=", "packageJsonData", ".", "scripts", ";", "if", "(", "scriptsInPackageJson", "&&", "typeof", "scriptsInPackageJson", "===", "\"object\"", ")", "{", "project", ".", "commands", "=", "Object", ".", "keys", "(", "scriptsInPackageJson", ")", ".", "map", "(", "(", "name", ")", "=>", "{", "return", "{", "_id", ":", "uuidv4", "(", ")", ",", "name", ",", "cmd", ":", "shouldRunWithYarn", "?", "`yarn ${", "name", "}`", ":", "`npm run ${", "name", "}`", ",", "execDir", ":", "\"\"", ",", "lastExecutedAt", ":", "getYesterday", "(", ")", ",", "}", ";", "}", ")", ";", "}", "else", "{", "project", ".", "commands", "=", "[", "]", ";", "}", "return", "project", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"nodeConfigFileParser error:\"", ",", "error", ")", ";", "return", "null", ";", "}", "}", ";", "const", "projectParsers", "=", "[", "nodeConfigFileParser", "]", ";", "const", "getProjectData", "=", "(", "file", ")", ":", "IProject", "|", "null", "=>", "{", "for", "(", "const", "parser", "of", "projectParsers", ")", "{", "const", "parsedData", "=", "parser", "(", "file", ")", ";", "if", "(", "parsedData", "===", "null", ")", "{", "continue", ";", "}", "return", "parsedData", ";", "}", "return", "null", ";", "}", ";", "const", "extractProjectDataFromConfigFile", "=", "(", "file", ")", ":", "IProject", "|", "null", "=>", "{", "if", "(", "file", ".", "data", "!==", "null", ")", "{", "const", "project", "=", "getProjectData", "(", "file", ")", ";", "return", "project", ";", "}", "return", "null", ";", "}", ";", "export", "default", "extractProjectDataFromConfigFile", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, 0, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 8, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 2, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, 1128, null, null, 0, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, 0, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 1128, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660198
[ "import", "{", "Button", ",", "Classes", ",", "HTMLTable", ",", "Icon", "}", "from", "\"@blueprintjs/core\"", ";", "import", "React", "from", "\"react\"", ";", "interface", "INewProjectCommandsProps", "{", "commands", ":", "IProjectCommand", "[", "]", ";", "setCommands", ":", "(", "commands", ":", "IProjectCommand", "[", "]", ")", "=>", "any", ";", "}", "const", "NewProjectCommands", "=", "React", ".", "memo", "(", "(", "{", "commands", ",", "setCommands", "}", ")", "=>", "{", "if", "(", "commands", ".", "length", "===", "0", ")", "{", "return", "<", "div", "/>;", "}", "const", "removeCommand", "=", "(", "cmd", ")", "=>", "{", "const", "_commands", "=", "[", "...", "commands", "]", ";", "const", "updatedCommands", "=", "_commands", ".", "filter", "(", "(", "command", ")", "=>", "command", ".", "_id", "!==", "cmd", ".", "_id", ")", ";", "setCommands", "(", "updatedCommands", ")", ";", "}", ";", "return", "(", "<", "div", ">", "<", "HTMLTable", "className", "=", "{", "Classes", ".", "HTML_TABLE", "}", ">", "<", "thead", ">", "<", "tr", ">", "<", "th", ">", "Name", "<", "/th>", "<", "th", ">", "Command", "<", "/th>", "<", "th", "/", ">", "<", "/tr>", "<", "/thead>", "<", "tbody", ">", "{", "commands", ".", "map", "(", "(", "command", ")", "=>", "{", "return", "(", "<", "tr", "key", "=", "{", "command", ".", "_id", "}", "data", "-", "testid", "=", "\"new-project-task-row\"", ">", "<", "td", ">", "{", "command", ".", "name", "}", "<", "/td>", "<", "td", ">", "{", "command", ".", "cmd", "}", "<", "/td>", "<", "td", ">", "<", "Button", "intent", "=", "{", "\"danger\"", "}", "minimal", "=", "{", "true", "}", "onClick", "=", "{", "(", ")", "=>", "removeCommand", "(", "command", ")", "}", ">", "<", "Icon", "icon", "=", "\"cross\"", "/", ">", "<", "/Button>", "<", "/td>", "<", "/tr>);", "}", ")", "}", "<", "/tbody>", "<", "/HTMLTable>", "<", "/div>);", "}", ")", ";", "export", "default", "NewProjectCommands", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 4, null, null, 10065, null, null, null, null, 5, null, null, null, null, null, null, null, 5, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 10065, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]
660199
[ "import", "{", "Button", "}", "from", "\"@blueprintjs/core\"", ";", "import", "{", "captureException", "}", "from", "\"@sentry/react\"", ";", "import", "React", "from", "\"react\"", ";", "import", "styled", "from", "\"styled-components\"", ";", "import", "{", "isRunningInElectron", "}", "from", "\"../../utils/electron\"", ";", "const", "ProjectFileFieldContainer", "=", "styled", ".", "div", "`\n display: flex;\n flex-direction: column;\n justify-content: center;\n align-items: center;\n`", ";", "interface", "IProjectFileUploadProps", "{", "configFileName", "?", ":", "string", ";", "onConfigFileUpload", ":", "(", "fileName", ":", "string", ",", "data", ":", "any", ")", "=>", "void", ";", "}", "const", "ProjectFileUpload", "=", "React", ".", "memo", "(", "(", "{", "configFileName", ",", "onConfigFileUpload", "}", ")", "=>", "{", "const", "openUploadDialog", "=", "async", "(", ")", "=>", "{", "if", "(", "isRunningInElectron", "(", ")", ")", "{", "try", "{", "const", "{", "fileData", ",", "filePath", "}", "=", "await", "window", ".", "desktop", ".", "uploadAndReadPackageJSON", "(", ")", ";", "onConfigFileUpload", "(", "filePath", ",", "fileData", ")", ";", "}", "catch", "(", "error", ")", "{", "console", ".", "log", "(", "\"error:\"", ",", "error", ")", ";", "captureException", "(", "error", ")", ";", "return", "null", ";", "}", "}", "}", ";", "return", "(", "<", "ProjectFileFieldContainer", ">", "{", "configFileName", "?", "<", "p", ">", "{", "configFileName", "}", "<", "/p> : null}", "<", "Button", "text", "=", "\"Upload project file\"", "icon", "=", "\"upload\"", "intent", "=", "\"primary\"", "onClick", "=", "{", "openUploadDialog", "}", "/", ">", "<", "/ProjectFileFieldContainer>);", "}", ")", ";", "export", "default", "ProjectFileUpload", ";" ]
[ null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 14, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 28, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, 7, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null, null ]