id
stringlengths 1
6
| tokens
sequence | labels
sequence |
---|---|---|
660100 | [
"import",
"{",
"ControlsPlugin",
"}",
"from",
"'./plugin'",
";",
"export",
"type",
"{",
"ControlOutput",
",",
"ControlFactory",
",",
"ControlEmbeddable",
",",
"ControlEditorProps",
",",
"CommonControlOutput",
",",
"IEditableControlFactory",
",",
"}",
"from",
"'./types'",
";",
"export",
"type",
"{",
"ControlWidth",
",",
"ControlStyle",
",",
"ParentIgnoreSettings",
",",
"ControlInput",
",",
"}",
"from",
"'../common/types'",
";",
"export",
"{",
"OPTIONS_LIST_CONTROL",
",",
"CONTROL_GROUP_TYPE",
"}",
"from",
"'../common'",
";",
"export",
"{",
"ControlGroupContainer",
",",
"ControlGroupContainerFactory",
",",
"type",
",",
"ControlGroupInput",
",",
"type",
",",
"ControlGroupOutput",
",",
"}",
"from",
"'./control_group'",
";",
"export",
"{",
"OptionsListEmbeddableFactory",
",",
"OptionsListEmbeddable",
",",
"type",
",",
"OptionsListEmbeddableInput",
",",
"}",
"from",
"'./control_types'",
";",
"export",
"function",
"plugin",
"(",
")",
"{",
"return",
"new",
"ControlsPlugin",
"(",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660101 | [
"import",
"{",
"ControlEmbeddable",
",",
"ControlFactory",
",",
"ControlInput",
",",
"ControlOutput",
"}",
"from",
"'.'",
";",
"import",
"{",
"EmbeddableFactory",
"}",
"from",
"'../../embeddable/public'",
";",
"import",
"{",
"ControlTypeRegistry",
"}",
"from",
"'./services/controls'",
";",
"export",
"class",
"ControlsService",
"{",
"private",
"controlsFactoriesMap",
":",
"ControlTypeRegistry",
"=",
"{",
"}",
";",
"public",
"registerControlType",
"=",
"(",
"factory",
")",
"=>",
"{",
"this",
".",
"controlsFactoriesMap",
"[",
"factory",
".",
"type",
"]",
"=",
"factory",
";",
"}",
";",
"public",
"getControlFactory",
"=",
"<",
"I",
"extends",
"ControlInput",
"=",
"ControlInput",
",",
"O",
"extends",
"ControlOutput",
"=",
"ControlOutput",
",",
"E",
"extends",
"ControlEmbeddable",
"<",
"I",
",",
"O",
">",
"=",
"ControlEmbeddable",
"<",
"I",
",",
"O",
">",
">",
"(",
"type",
")",
"=>",
"{",
"return",
"this",
".",
"controlsFactoriesMap",
"[",
"type",
"]",
"as",
"EmbeddableFactory",
"<",
"I",
",",
"O",
",",
"E",
">",
";",
"}",
";",
"public",
"getControlTypes",
"=",
"(",
")",
"=>",
"Object",
".",
"keys",
"(",
"this",
".",
"controlsFactoriesMap",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660102 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"EuiFlexGroup",
",",
"EuiFlexItem",
"}",
"from",
"'@elastic/eui'",
";",
"import",
"{",
"Story",
"}",
"from",
"'@storybook/react'",
";",
"const",
"bar",
"=",
"'#c5ced8'",
";",
"const",
"panel",
"=",
"'#ffff'",
";",
"const",
"background",
"=",
"'#FAFBFD'",
";",
"const",
"minHeight",
"=",
"60",
";",
"const",
"panelStyle",
"=",
"{",
"height",
":",
"165",
",",
"width",
":",
"400",
",",
"background",
":",
"panel",
",",
"}",
";",
"const",
"kqlBarStyle",
"=",
"{",
"background",
":",
"bar",
",",
"padding",
":",
"16",
",",
"minHeight",
",",
"fontStyle",
":",
"'italic'",
"}",
";",
"const",
"layout",
"=",
"(",
"OptionStory",
")",
"=>",
"(",
"<",
"EuiFlexGroup",
"style",
"=",
"{",
"{",
"background",
"}",
"}",
"direction",
"=",
"\"column\"",
">",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"kqlBarStyle",
"}",
">",
"KQL",
"Bar",
"<",
"/EuiFlexItem>",
"<",
"EuiFlexItem",
">",
"<",
"OptionStory",
"/>",
"<",
"/EuiFlexItem>",
"<",
"EuiFlexItem",
">",
"<",
"EuiFlexGroup",
">",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"panelStyle",
"}",
"/>",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"panelStyle",
"}",
"/",
">",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"panelStyle",
"}",
"/>",
"<",
"/EuiFlexGroup>",
"<",
"/EuiFlexItem>",
"<",
"EuiFlexItem",
">",
"<",
"EuiFlexGroup",
">",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"panelStyle",
"}",
"/>",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"panelStyle",
"}",
"/",
">",
"<",
"EuiFlexItem",
"style",
"=",
"{",
"panelStyle",
"}",
"/>",
"<",
"/EuiFlexGroup>",
"<",
"/EuiFlexItem>",
"<",
"/EuiFlexGroup>);",
"export",
"const",
"decorators",
"=",
"[",
"layout",
"]",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
3,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
246,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660103 | [
"import",
"{",
"EuiConfirmModal",
",",
"EuiFlyout",
"}",
"from",
"'@elastic/eui'",
";",
"import",
"{",
"render",
",",
"unmountComponentAtNode",
"}",
"from",
"'react-dom'",
";",
"import",
"{",
"Subject",
"}",
"from",
"'rxjs'",
";",
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"MountPoint",
",",
"OverlayFlyoutOpenOptions",
",",
"OverlayModalConfirmOptions",
",",
"OverlayRef",
",",
"}",
"from",
"'../../../../../core/public'",
";",
"import",
"{",
"ControlsOverlaysService",
"}",
"from",
"'../overlays'",
";",
"import",
"{",
"MountWrapper",
"}",
"from",
"'../../../../../core/public/utils'",
";",
"import",
"{",
"PluginServiceFactory",
"}",
"from",
"'../../../../presentation_util/public'",
";",
"type",
"OverlaysServiceFactory",
"=",
"PluginServiceFactory",
"<",
"ControlsOverlaysService",
">",
";",
"/**\n * This code is a storybook stub version of src/core/public/overlays/overlay_service.ts\n * Eventually, core services should have simple storybook representations, but until that happens\n * it is necessary to recreate their functionality here.\n */",
"class",
"GenericOverlayRef",
"implements",
"OverlayRef",
"{",
"public",
"readonly",
"onClose",
":",
"Promise",
"<",
"void",
">",
";",
"private",
"closeSubject",
"=",
"new",
"Subject",
"<",
"void",
">",
"(",
")",
";",
"constructor",
"(",
")",
"{",
"this",
".",
"onClose",
"=",
"this",
".",
"closeSubject",
".",
"toPromise",
"(",
")",
";",
"}",
"public",
"close",
"(",
")",
"{",
"if",
"(",
"!",
"this",
".",
"closeSubject",
".",
"closed",
")",
"{",
"this",
".",
"closeSubject",
".",
"next",
"(",
")",
";",
"this",
".",
"closeSubject",
".",
"complete",
"(",
")",
";",
"}",
"return",
"this",
".",
"onClose",
";",
"}",
"}",
"export",
"const",
"overlaysServiceFactory",
"=",
"(",
")",
"=>",
"{",
"const",
"flyoutDomElement",
"=",
"document",
".",
"createElement",
"(",
"'div'",
")",
";",
"const",
"modalDomElement",
"=",
"document",
".",
"createElement",
"(",
"'div'",
")",
";",
"let",
"activeFlyout",
";",
"let",
"activeModal",
";",
"const",
"cleanupModal",
"=",
"(",
")",
"=>",
"{",
"if",
"(",
"modalDomElement",
"!=",
"null",
")",
"{",
"unmountComponentAtNode",
"(",
"modalDomElement",
")",
";",
"modalDomElement",
".",
"innerHTML",
"=",
"''",
";",
"}",
"activeModal",
"=",
"null",
";",
"}",
";",
"const",
"cleanupFlyout",
"=",
"(",
")",
"=>",
"{",
"if",
"(",
"flyoutDomElement",
"!=",
"null",
")",
"{",
"unmountComponentAtNode",
"(",
"flyoutDomElement",
")",
";",
"flyoutDomElement",
".",
"innerHTML",
"=",
"''",
";",
"}",
"activeFlyout",
"=",
"null",
";",
"}",
";",
"return",
"{",
"openFlyout",
":",
"(",
"mount",
",",
"options",
"?",
")",
"=>",
"{",
"if",
"(",
"activeFlyout",
")",
"{",
"activeFlyout",
".",
"close",
"(",
")",
";",
"cleanupFlyout",
"(",
")",
";",
"}",
"const",
"flyout",
"=",
"new",
"GenericOverlayRef",
"(",
")",
";",
"flyout",
".",
"onClose",
".",
"then",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"activeFlyout",
"===",
"flyout",
")",
"{",
"cleanupFlyout",
"(",
")",
";",
"}",
"}",
")",
";",
"activeFlyout",
"=",
"flyout",
";",
"const",
"onCloseFlyout",
"=",
"(",
")",
"=>",
"{",
"if",
"(",
"options",
"?.",
"onClose",
")",
"{",
"options",
"?.",
"onClose",
"(",
"flyout",
")",
";",
"return",
";",
"}",
"flyout",
".",
"close",
"(",
")",
";",
"}",
";",
"render",
"(",
"<",
"EuiFlyout",
"onClose",
"=",
"{",
"onCloseFlyout",
"}",
">",
"<",
"MountWrapper",
"mount",
"=",
"{",
"mount",
"}",
"className",
"=",
"\"kbnOverlayMountWrapper\"",
"/",
">",
"<",
"/EuiFlyout>, flyoutDomElement);",
"return",
"flyout",
";",
"}",
",",
"openConfirm",
":",
"(",
"message",
",",
"options",
"?",
")",
"=>",
"{",
"if",
"(",
"activeModal",
")",
"{",
"activeModal",
".",
"close",
"(",
")",
";",
"cleanupModal",
"(",
")",
";",
"}",
"return",
"new",
"Promise",
"(",
"(",
"resolve",
",",
"reject",
")",
"=>",
"{",
"let",
"resolved",
"=",
"false",
";",
"const",
"closeModal",
"=",
"(",
"confirmed",
")",
"=>",
"{",
"resolved",
"=",
"true",
";",
"modal",
".",
"close",
"(",
")",
";",
"resolve",
"(",
"confirmed",
")",
";",
"}",
";",
"const",
"modal",
"=",
"new",
"GenericOverlayRef",
"(",
")",
";",
"modal",
".",
"onClose",
".",
"then",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"activeModal",
"===",
"modal",
")",
"{",
"cleanupModal",
"(",
")",
";",
"}",
"if",
"(",
"!",
"resolved",
")",
"{",
"closeModal",
"(",
"false",
")",
";",
"}",
"}",
")",
";",
"activeModal",
"=",
"modal",
";",
"const",
"props",
"=",
"{",
"...",
"options",
",",
"children",
":",
"typeof",
"message",
"===",
"'string'",
"?",
"(",
"message",
")",
":",
"(",
"<",
"MountWrapper",
"mount",
"=",
"{",
"message",
"}",
"className",
"=",
"\"kbnOverlayMountWrapper\"",
"/",
">",
")",
",",
"onCancel",
":",
"(",
")",
"=>",
"closeModal",
"(",
"false",
")",
",",
"onConfirm",
":",
"(",
")",
"=>",
"closeModal",
"(",
"true",
")",
",",
"cancelButtonText",
":",
"options",
"?.",
"cancelButtonText",
"||",
"''",
",",
"confirmButtonText",
":",
"options",
"?.",
"confirmButtonText",
"||",
"''",
",",
"}",
";",
"render",
"(",
"<",
"EuiConfirmModal",
"{",
"...",
"props",
"}",
"/",
">",
",",
"modalDomElement",
")",
";",
"}",
")",
";",
"}",
",",
"}",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
39,
null,
null,
null,
null,
null,
null,
null,
null,
null,
39,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1413,
null,
null,
1413,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8722,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
4,
null,
null,
null,
null,
8,
null,
null,
null,
null,
4,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660104 | [
"import",
"{",
"PluginServiceFactory",
"}",
"from",
"'../../../../presentation_util/public'",
";",
"import",
"{",
"getCommonControlsService",
",",
"ControlsService",
"}",
"from",
"'../controls'",
";",
"export",
"type",
"ControlsServiceFactory",
"=",
"PluginServiceFactory",
"<",
"ControlsService",
">",
";",
"export",
"const",
"controlsServiceFactory",
"=",
"(",
")",
"=>",
"getCommonControlsService",
"(",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null
] |
660105 | [
"import",
"{",
"OptionsListEmbeddableFactory",
"}",
"from",
"'../control_types/options_list'",
";",
"import",
"{",
"ControlsService",
"}",
"from",
"'../services/controls'",
";",
"import",
"{",
"ControlFactory",
"}",
"from",
"'..'",
";",
"export",
"const",
"populateStorybookControlFactories",
"=",
"(",
"controlsServiceStub",
")",
"=>",
"{",
"const",
"optionsListFactoryStub",
"=",
"new",
"OptionsListEmbeddableFactory",
"(",
")",
";",
"const",
"optionsListControlFactory",
"=",
"optionsListFactoryStub",
"as",
"unknown",
"as",
"ControlFactory",
";",
"optionsListControlFactory",
".",
"getDefaultInput",
"=",
"(",
")",
"=>",
"(",
"{",
"}",
")",
";",
"controlsServiceStub",
".",
"registerControlType",
"(",
"optionsListControlFactory",
")",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
9902,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660106 | [
"import",
"{",
"EuiFlexGroup",
",",
"EuiFlexItem",
",",
"EuiSwitch",
",",
"EuiTextAlign",
"}",
"from",
"'@elastic/eui'",
";",
"import",
"React",
",",
"{",
"useEffect",
",",
"useMemo",
",",
"useState",
",",
"useCallback",
",",
"FC",
"}",
"from",
"'react'",
";",
"import",
"useEffectOnce",
"from",
"'react-use/lib/useEffectOnce'",
";",
"import",
"uuid",
"from",
"'uuid'",
";",
"import",
"{",
"getFlightOptionsAsync",
",",
"storybookFlightsDataView",
",",
"}",
"from",
"'../../../presentation_util/public/mocks'",
";",
"import",
"{",
"ControlGroupContainerFactory",
",",
"OptionsListEmbeddableInput",
",",
"OPTIONS_LIST_CONTROL",
",",
"}",
"from",
"'../'",
";",
"import",
"{",
"ViewMode",
"}",
"from",
"'../../../embeddable/public'",
";",
"import",
"{",
"EmbeddablePersistableStateService",
"}",
"from",
"'../../../embeddable/common'",
";",
"import",
"{",
"decorators",
"}",
"from",
"'./decorators'",
";",
"import",
"{",
"ControlsPanels",
"}",
"from",
"'../control_group/types'",
";",
"import",
"{",
"ControlGroupContainer",
"}",
"from",
"'../control_group'",
";",
"import",
"{",
"pluginServices",
",",
"registry",
"}",
"from",
"'../services/storybook'",
";",
"import",
"{",
"replaceValueSuggestionMethod",
"}",
"from",
"'../services/storybook/data'",
";",
"import",
"{",
"injectStorybookDataView",
"}",
"from",
"'../services/storybook/data_views'",
";",
"import",
"{",
"populateStorybookControlFactories",
"}",
"from",
"'./storybook_control_factories'",
";",
"export",
"default",
"{",
"title",
":",
"'Controls'",
",",
"description",
":",
"''",
",",
"decorators",
",",
"}",
";",
"injectStorybookDataView",
"(",
"storybookFlightsDataView",
")",
";",
"replaceValueSuggestionMethod",
"(",
"getFlightOptionsAsync",
")",
";",
"const",
"ControlGroupStoryComponent",
"=",
"(",
"{",
"panels",
",",
"edit",
"}",
")",
"=>",
"{",
"const",
"embeddableRoot",
"=",
"useMemo",
"(",
"(",
")",
"=>",
"React",
".",
"createRef",
"(",
")",
",",
"[",
"]",
")",
";",
"const",
"[",
"embeddable",
",",
"setEmbeddable",
"]",
"=",
"useState",
"<",
"ControlGroupContainer",
">",
"(",
")",
";",
"const",
"[",
"viewMode",
",",
"setViewMode",
"]",
"=",
"useState",
"<",
"ViewMode",
">",
"(",
"edit",
"===",
"undefined",
"||",
"edit",
"?",
"ViewMode",
".",
"EDIT",
":",
"ViewMode",
".",
"VIEW",
")",
";",
"const",
"handleToggleViewMode",
"=",
"useCallback",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"embeddable",
")",
"{",
"const",
"newViewMode",
"=",
"embeddable",
".",
"getInput",
"(",
")",
".",
"viewMode",
"===",
"ViewMode",
".",
"EDIT",
"?",
"ViewMode",
".",
"VIEW",
":",
"ViewMode",
".",
"EDIT",
";",
"embeddable",
".",
"updateInput",
"(",
"{",
"viewMode",
":",
"newViewMode",
"}",
")",
";",
"}",
"}",
",",
"[",
"embeddable",
"]",
")",
";",
"pluginServices",
".",
"setRegistry",
"(",
"registry",
".",
"start",
"(",
"{",
"}",
")",
")",
";",
"populateStorybookControlFactories",
"(",
"pluginServices",
".",
"getServices",
"(",
")",
".",
"controls",
")",
";",
"useEffectOnce",
"(",
"(",
")",
"=>",
"{",
"(",
"async",
"(",
")",
"=>",
"{",
"const",
"factory",
"=",
"new",
"ControlGroupContainerFactory",
"(",
"{",
"}",
"as",
"unknown",
"as",
"EmbeddablePersistableStateService",
")",
";",
"const",
"controlGroupContainerEmbeddable",
"=",
"await",
"factory",
".",
"create",
"(",
"{",
"controlStyle",
":",
"'oneLine'",
",",
"panels",
":",
"panels",
"??",
"{",
"}",
",",
"id",
":",
"uuid",
".",
"v4",
"(",
")",
",",
"viewMode",
",",
"}",
")",
";",
"if",
"(",
"controlGroupContainerEmbeddable",
"&&",
"embeddableRoot",
".",
"current",
")",
"{",
"controlGroupContainerEmbeddable",
".",
"render",
"(",
"embeddableRoot",
".",
"current",
")",
";",
"}",
"setEmbeddable",
"(",
"controlGroupContainerEmbeddable",
")",
";",
"}",
")",
"(",
")",
";",
"}",
")",
";",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"embeddable",
")",
"{",
"const",
"subscription",
"=",
"embeddable",
".",
"getInput$",
"(",
")",
".",
"subscribe",
"(",
"(",
"updatedInput",
")",
"=>",
"{",
"if",
"(",
"updatedInput",
".",
"viewMode",
")",
"{",
"setViewMode",
"(",
"updatedInput",
".",
"viewMode",
")",
";",
"}",
"}",
")",
";",
"return",
"(",
")",
"=>",
"subscription",
".",
"unsubscribe",
"(",
")",
";",
"}",
"}",
",",
"[",
"embeddable",
",",
"setViewMode",
"]",
")",
";",
"return",
"(",
"<",
">",
"<",
"EuiFlexGroup",
">",
"<",
"EuiFlexItem",
">",
"<",
"EuiTextAlign",
"textAlign",
"=",
"\"right\"",
">",
"<",
"EuiSwitch",
"checked",
"=",
"{",
"viewMode",
"===",
"'edit'",
"}",
"label",
"=",
"\"Edit\"",
"onChange",
"=",
"{",
"handleToggleViewMode",
"}",
"/",
">",
"<",
"/EuiTextAlign>",
"<",
"/EuiFlexItem>",
"<",
"/EuiFlexGroup>",
"<",
"br",
"/",
">",
"<",
"div",
"ref",
"=",
"{",
"embeddableRoot",
"}",
"/>",
"<",
"/>);",
"}",
";",
"export",
"const",
"EmptyControlGroupStory",
"=",
"(",
")",
"=>",
"<",
"ControlGroupStoryComponent",
"edit",
"=",
"{",
"false",
"}",
"/>;",
"export",
"const",
"ConfiguredControlGroupStory",
"=",
"(",
")",
"=>",
"(",
"<",
"ControlGroupStoryComponent",
"panels",
"=",
"{",
"{",
"optionsList1",
":",
"{",
"type",
":",
"OPTIONS_LIST_CONTROL",
",",
"order",
":",
"1",
",",
"width",
":",
"'auto'",
",",
"explicitInput",
":",
"{",
"title",
":",
"'Origin City'",
",",
"id",
":",
"'optionsList1'",
",",
"dataViewId",
":",
"'demoDataFlights'",
",",
"fieldName",
":",
"'OriginCityName'",
",",
"selectedOptions",
":",
"[",
"'Toronto'",
"]",
",",
"}",
"as",
"OptionsListEmbeddableInput",
",",
"}",
",",
"optionsList2",
":",
"{",
"type",
":",
"OPTIONS_LIST_CONTROL",
",",
"order",
":",
"2",
",",
"width",
":",
"'auto'",
",",
"explicitInput",
":",
"{",
"title",
":",
"'Destination City'",
",",
"id",
":",
"'optionsList2'",
",",
"dataViewId",
":",
"'demoDataFlights'",
",",
"fieldName",
":",
"'DestCityName'",
",",
"selectedOptions",
":",
"[",
"'London'",
"]",
",",
"}",
"as",
"OptionsListEmbeddableInput",
",",
"}",
",",
"optionsList3",
":",
"{",
"type",
":",
"OPTIONS_LIST_CONTROL",
",",
"order",
":",
"3",
",",
"width",
":",
"'auto'",
",",
"explicitInput",
":",
"{",
"title",
":",
"'Carrier'",
",",
"id",
":",
"'optionsList3'",
",",
"dataViewId",
":",
"'demoDataFlights'",
",",
"fieldName",
":",
"'Carrier'",
",",
"}",
"as",
"OptionsListEmbeddableInput",
",",
"}",
",",
"}",
"}",
"/>);"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
45,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
823,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660107 | [
"import",
"{",
"EmbeddablePersistableStateService",
"}",
"from",
"'../../../embeddable/common'",
";",
"import",
"{",
"EmbeddableRegistryDefinition",
"}",
"from",
"'../../../embeddable/server'",
";",
"import",
"{",
"CONTROL_GROUP_TYPE",
"}",
"from",
"'../../common'",
";",
"import",
"{",
"createControlGroupExtract",
",",
"createControlGroupInject",
",",
"}",
"from",
"'../../common/control_group/control_group_persistable_state'",
";",
"export",
"const",
"controlGroupContainerPersistableStateServiceFactory",
"=",
"(",
"persistableStateService",
")",
":",
"EmbeddableRegistryDefinition",
"=>",
"{",
"return",
"{",
"id",
":",
"CONTROL_GROUP_TYPE",
",",
"extract",
":",
"createControlGroupExtract",
"(",
"persistableStateService",
")",
",",
"inject",
":",
"createControlGroupInject",
"(",
"persistableStateService",
")",
",",
"}",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
36794,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660108 | [
"import",
"{",
"EmbeddableRegistryDefinition",
"}",
"from",
"'../../../../embeddable/server'",
";",
"import",
"{",
"OPTIONS_LIST_CONTROL",
"}",
"from",
"'../../../common'",
";",
"import",
"{",
"createOptionsListExtract",
",",
"createOptionsListInject",
",",
"}",
"from",
"'../../../common/control_types/options_list/options_list_persistable_state'",
";",
"export",
"const",
"optionsListPersistableStateServiceFactory",
"=",
"(",
")",
":",
"EmbeddableRegistryDefinition",
"=>",
"{",
"return",
"{",
"id",
":",
"OPTIONS_LIST_CONTROL",
",",
"extract",
":",
"createOptionsListExtract",
"(",
")",
",",
"inject",
":",
"createOptionsListInject",
"(",
")",
",",
"}",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660109 | [
"import",
"{",
"CoreSetup",
",",
"Plugin",
"}",
"from",
"'kibana/server'",
";",
"import",
"{",
"EmbeddableSetup",
"}",
"from",
"'../../embeddable/server'",
";",
"import",
"{",
"controlGroupContainerPersistableStateServiceFactory",
"}",
"from",
"'./control_group/control_group_container_factory'",
";",
"import",
"{",
"optionsListPersistableStateServiceFactory",
"}",
"from",
"'./control_types/options_list/options_list_embeddable_factory'",
";",
"interface",
"SetupDeps",
"{",
"embeddable",
":",
"EmbeddableSetup",
";",
"}",
"export",
"class",
"ControlsPlugin",
"implements",
"Plugin",
"<",
"object",
",",
"object",
",",
"SetupDeps",
">",
"{",
"public",
"setup",
"(",
"core",
",",
"plugins",
")",
"{",
"plugins",
".",
"embeddable",
".",
"registerEmbeddableFactory",
"(",
"optionsListPersistableStateServiceFactory",
"(",
")",
")",
";",
"plugins",
".",
"embeddable",
".",
"registerEmbeddableFactory",
"(",
"controlGroupContainerPersistableStateServiceFactory",
"(",
"plugins",
".",
"embeddable",
")",
")",
";",
"return",
"{",
"}",
";",
"}",
"public",
"start",
"(",
")",
"{",
"return",
"{",
"}",
";",
"}",
"public",
"stop",
"(",
")",
"{",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
501,
null,
3479,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null
] |
660110 | [
"import",
"{",
"ControlsPlugin",
"}",
"from",
"'./plugin'",
";",
"export",
"const",
"plugin",
"=",
"(",
")",
"=>",
"new",
"ControlsPlugin",
"(",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660111 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"DecoratorFn",
"}",
"from",
"'@storybook/react'",
";",
"import",
"{",
"I18nProvider",
"}",
"from",
"'@kbn/i18n-react'",
";",
"import",
"{",
"pluginServices",
"}",
"from",
"'../public/services'",
";",
"import",
"{",
"ControlsServices",
"}",
"from",
"'../public/services'",
";",
"import",
"{",
"providers",
"}",
"from",
"'../public/services/storybook'",
";",
"import",
"{",
"PluginServiceRegistry",
"}",
"from",
"'../../presentation_util/public'",
";",
"import",
"{",
"KibanaContextProvider",
"as",
"KibanaReactProvider",
"}",
"from",
"'../../kibana_react/public'",
";",
"const",
"settings",
"=",
"new",
"Map",
"(",
")",
";",
"settings",
".",
"set",
"(",
"'darkMode'",
",",
"true",
")",
";",
"const",
"services",
"=",
"{",
"http",
":",
"{",
"basePath",
":",
"{",
"get",
":",
"(",
")",
"=>",
"''",
",",
"prepend",
":",
"(",
")",
"=>",
"''",
",",
"remove",
":",
"(",
")",
"=>",
"''",
",",
"serverBasePath",
":",
"''",
",",
"}",
",",
"}",
",",
"uiSettings",
":",
"settings",
",",
"}",
";",
"export",
"const",
"servicesContextDecorator",
"=",
"(",
"story",
",",
"storybook",
")",
"=>",
"{",
"const",
"registry",
"=",
"new",
"PluginServiceRegistry",
"<",
"ControlsServices",
">",
"(",
"providers",
")",
";",
"pluginServices",
".",
"setRegistry",
"(",
"registry",
".",
"start",
"(",
"storybook",
".",
"args",
")",
")",
";",
"const",
"ContextProvider",
"=",
"pluginServices",
".",
"getContextProvider",
"(",
")",
";",
"return",
"(",
"<",
"I18nProvider",
">",
"<",
"KibanaReactProvider",
"services",
"=",
"{",
"services",
"}",
">",
"<",
"ContextProvider",
">",
"{",
"story",
"(",
")",
"}",
"<",
"/ContextProvider>",
"<",
"/KibanaReactProvider>",
"<",
"/I18nProvider>);",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
19,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
26305,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660112 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"addDecorator",
"}",
"from",
"'@storybook/react'",
";",
"import",
"{",
"Title",
",",
"Subtitle",
",",
"Description",
",",
"Primary",
",",
"Stories",
"}",
"from",
"'@storybook/addon-docs/blocks'",
";",
"import",
"{",
"servicesContextDecorator",
"}",
"from",
"'./decorator'",
";",
"addDecorator",
"(",
"servicesContextDecorator",
")",
";",
"export",
"const",
"parameters",
"=",
"{",
"docs",
":",
"{",
"page",
":",
"(",
")",
"=>",
"(",
"<",
">",
"<",
"Title",
"/>",
"<",
"Subtitle",
"/",
">",
"<",
"Description",
"/>",
"<",
"Primary",
"/",
">",
"<",
"Stories",
"/>",
"<",
"/>),",
"}",
",",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660113 | [
"'use strict'",
";",
"import",
"{",
"addJSONProviders",
"}",
"from",
"'./features/jsonContributions'",
";",
"import",
"*",
"as",
"httpRequest",
"from",
"'request-light'",
";",
"import",
"{",
"ExtensionContext",
",",
"env",
",",
"workspace",
"}",
"from",
"'vscode'",
";",
"import",
"*",
"as",
"nls",
"from",
"'vscode-nls'",
";",
"export",
"function",
"activate",
"(",
"context",
")",
"{",
"nls",
".",
"config",
"(",
"{",
"locale",
":",
"env",
".",
"language",
"}",
")",
";",
"configureHttpRequest",
"(",
")",
";",
"workspace",
".",
"onDidChangeConfiguration",
"(",
"e",
"=>",
"configureHttpRequest",
"(",
")",
")",
";",
"context",
".",
"subscriptions",
".",
"push",
"(",
"addJSONProviders",
"(",
"httpRequest",
".",
"xhr",
")",
")",
";",
"}",
"function",
"configureHttpRequest",
"(",
")",
"{",
"let",
"httpSettings",
"=",
"workspace",
".",
"getConfiguration",
"(",
"'http'",
")",
";",
"httpRequest",
".",
"configure",
"(",
"httpSettings",
".",
"get",
"<",
"string",
">",
"(",
"'proxy'",
")",
",",
"httpSettings",
".",
"get",
"<",
"boolean",
">",
"(",
"'proxyStrictSSL'",
")",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
606,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
404,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660114 | [
"export",
"default",
"class",
"NestedFrequencyTable",
"{",
"public",
"categories",
":",
"{",
"[",
"key",
"]",
":",
"any",
";",
"}",
";",
"constructor",
"(",
"initialData",
"=",
"{",
"}",
")",
"{",
"this",
".",
"categories",
"=",
"{",
"...",
"initialData",
"}",
";",
"}",
"total",
"(",
")",
"{",
"let",
"t",
"=",
"0",
";",
"for",
"(",
"const",
"k",
"in",
"this",
".",
"categories",
")",
"{",
"const",
"v",
"=",
"this",
".",
"categories",
"[",
"k",
"]",
";",
"t",
"+=",
"v",
".",
"total",
"?",
"v",
".",
"total",
"(",
")",
":",
"v",
";",
"}",
"return",
"t",
";",
"}",
"decrement",
"(",
"slotName",
",",
"amount",
")",
"{",
"if",
"(",
"!",
"amount",
")",
"{",
"amount",
"=",
"1",
";",
"}",
"if",
"(",
"!",
"slotName",
")",
"{",
"slotName",
"=",
"'default'",
";",
"}",
"else",
"{",
"slotName",
"=",
"slotName",
".",
"toString",
"(",
")",
";",
"}",
"if",
"(",
"this",
".",
"categories",
"[",
"slotName",
"]",
")",
"{",
"this",
".",
"categories",
"[",
"slotName",
"]",
"=",
"Math",
".",
"max",
"(",
"0",
",",
"this",
".",
"categories",
"[",
"slotName",
"]",
"-",
"amount",
")",
";",
"return",
"this",
".",
"categories",
"[",
"slotName",
"]",
";",
"}",
"return",
"0",
";",
"}",
"increment",
"(",
"slotName",
",",
"amount",
")",
"{",
"if",
"(",
"!",
"amount",
")",
"{",
"amount",
"=",
"1",
";",
"}",
"if",
"(",
"!",
"slotName",
")",
"{",
"slotName",
"=",
"'default'",
";",
"}",
"else",
"{",
"slotName",
"=",
"slotName",
".",
"toString",
"(",
")",
";",
"}",
"this",
".",
"categories",
"[",
"slotName",
"]",
"=",
"(",
"this",
".",
"categories",
"[",
"slotName",
"]",
"||",
"0",
")",
"+",
"amount",
";",
"return",
"this",
".",
"categories",
"[",
"slotName",
"]",
";",
"}",
"get",
"(",
"slotName",
")",
"{",
"return",
"this",
".",
"categories",
"[",
"slotName",
"]",
"||",
"0",
";",
"}",
"getNested",
"(",
"path",
")",
"{",
"if",
"(",
"typeof",
"path",
"===",
"'string'",
")",
"{",
"path",
"=",
"path",
".",
"split",
"(",
"'/'",
")",
";",
"}",
"if",
"(",
"!",
"path",
".",
"length",
")",
"{",
"return",
"this",
";",
"}",
"const",
"slotName",
"=",
"path",
"[",
"0",
"]",
".",
"toString",
"(",
")",
";",
"let",
"slot",
"=",
"this",
".",
"categories",
"[",
"slotName",
"]",
";",
"if",
"(",
"!",
"slot",
"||",
"!",
"slot",
".",
"categories",
")",
"{",
"this",
".",
"categories",
"[",
"slotName",
"]",
"=",
"new",
"NestedFrequencyTable",
"(",
"slot",
"?",
"{",
"default",
":",
"slot",
"+",
"0",
"}",
":",
"{",
"}",
")",
";",
"}",
"slot",
"=",
"this",
".",
"categories",
"[",
"slotName",
"]",
";",
"if",
"(",
"path",
".",
"length",
">",
"1",
")",
"{",
"return",
"slot",
".",
"getNested",
"(",
"path",
".",
"slice",
"(",
"1",
")",
")",
";",
"}",
"return",
"slot",
";",
"}",
"toString",
"(",
")",
"{",
"return",
"this",
".",
"total",
"(",
")",
".",
"toPrecision",
"(",
"6",
")",
".",
"toString",
"(",
")",
".",
"replace",
"(",
"/\\.?0+$/",
",",
"''",
")",
";",
"}",
"valueOf",
"(",
")",
"{",
"return",
"this",
".",
"total",
"(",
")",
";",
"}",
"forEach",
"(",
"func",
",",
"ctx",
")",
"{",
"if",
"(",
"ctx",
")",
"{",
"for",
"(",
"const",
"slotName",
"in",
"this",
".",
"categories",
")",
"{",
"func",
".",
"call",
"(",
"ctx",
",",
"this",
".",
"categories",
"[",
"slotName",
"]",
",",
"slotName",
")",
";",
"}",
"}",
"else",
"{",
"for",
"(",
"const",
"slotName",
"in",
"this",
".",
"categories",
")",
"{",
"func",
"(",
"this",
".",
"categories",
"[",
"slotName",
"]",
",",
"slotName",
")",
";",
"}",
"}",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660115 | [
"import",
"{",
"revcom",
"}",
"from",
"'@jbrowse/core/util'",
";",
"export",
"interface",
"Mismatch",
"{",
"qual",
"?",
":",
"number",
";",
"start",
":",
"number",
";",
"length",
":",
"number",
";",
"type",
":",
"string",
";",
"base",
":",
"string",
";",
"altbase",
"?",
":",
"string",
";",
"seq",
"?",
":",
"string",
";",
"cliplen",
"?",
":",
"number",
";",
"}",
"export",
"function",
"parseCigar",
"(",
"cigar",
")",
"{",
"return",
"(",
"cigar",
"||",
"''",
")",
".",
"split",
"(",
"/([MIDNSHPX=])/",
")",
";",
"}",
"export",
"function",
"cigarToMismatches",
"(",
"ops",
",",
"seq",
",",
"qual",
"?",
")",
"{",
"let",
"currOffset",
"=",
"0",
";",
"let",
"seqOffset",
"=",
"0",
";",
"const",
"mismatches",
"=",
"[",
"]",
";",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"ops",
".",
"length",
"-",
"1",
";",
"i",
"+=",
"2",
")",
"{",
"const",
"len",
"=",
"+",
"ops",
"[",
"i",
"]",
";",
"const",
"op",
"=",
"ops",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"===",
"'M'",
"||",
"op",
"===",
"'='",
"||",
"op",
"===",
"'E'",
")",
"{",
"seqOffset",
"+=",
"len",
";",
"}",
"if",
"(",
"op",
"===",
"'I'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"currOffset",
",",
"type",
":",
"'insertion'",
",",
"base",
":",
"`${",
"len",
"}`",
",",
"length",
":",
"0",
",",
"}",
")",
";",
"seqOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'D'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"currOffset",
",",
"type",
":",
"'deletion'",
",",
"base",
":",
"'*'",
",",
"length",
":",
"len",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'N'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"currOffset",
",",
"type",
":",
"'skip'",
",",
"base",
":",
"'N'",
",",
"length",
":",
"len",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'X'",
")",
"{",
"const",
"r",
"=",
"seq",
".",
"slice",
"(",
"seqOffset",
",",
"seqOffset",
"+",
"len",
")",
";",
"const",
"q",
"=",
"qual",
"?.",
"slice",
"(",
"seqOffset",
",",
"seqOffset",
"+",
"len",
")",
"||",
"[",
"]",
";",
"for",
"(",
"let",
"j",
"=",
"0",
";",
"j",
"<",
"len",
";",
"j",
"++",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"currOffset",
"+",
"j",
",",
"type",
":",
"'mismatch'",
",",
"base",
":",
"r",
"[",
"j",
"]",
",",
"qual",
":",
"q",
"[",
"j",
"]",
",",
"length",
":",
"1",
",",
"}",
")",
";",
"}",
"seqOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'H'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"currOffset",
",",
"type",
":",
"'hardclip'",
",",
"base",
":",
"`H${",
"len",
"}`",
",",
"cliplen",
":",
"len",
",",
"length",
":",
"1",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'S'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"currOffset",
",",
"type",
":",
"'softclip'",
",",
"base",
":",
"`S${",
"len",
"}`",
",",
"cliplen",
":",
"len",
",",
"length",
":",
"1",
",",
"}",
")",
";",
"seqOffset",
"+=",
"len",
";",
"}",
"if",
"(",
"op",
"!==",
"'I'",
"&&",
"op",
"!==",
"'S'",
"&&",
"op",
"!==",
"'H'",
")",
"{",
"currOffset",
"+=",
"len",
";",
"}",
"}",
"return",
"mismatches",
";",
"}",
"returns",
"export",
"function",
"mdToMismatches",
"(",
"mdstring",
",",
"cigarOps",
",",
"cigarMismatches",
",",
"seq",
",",
"qual",
"?",
")",
"{",
"const",
"mismatchRecords",
"=",
"[",
"]",
";",
"let",
"curr",
"=",
"{",
"start",
":",
"0",
",",
"base",
":",
"''",
",",
"length",
":",
"0",
",",
"type",
":",
"'mismatch'",
"}",
";",
"const",
"skips",
"=",
"cigarMismatches",
".",
"filter",
"(",
"cigar",
"=>",
"cigar",
".",
"type",
"===",
"'skip'",
")",
";",
"let",
"lastCigar",
"=",
"0",
";",
"let",
"lastTemplateOffset",
"=",
"0",
";",
"let",
"lastRefOffset",
"=",
"0",
";",
"let",
"lastSkipPos",
"=",
"0",
";",
"function",
"nextRecord",
"(",
")",
"{",
"mismatchRecords",
".",
"push",
"(",
"curr",
")",
";",
"curr",
"=",
"{",
"start",
":",
"curr",
".",
"start",
"+",
"curr",
".",
"length",
",",
"length",
":",
"0",
",",
"base",
":",
"''",
",",
"type",
":",
"'mismatch'",
",",
"}",
";",
"}",
"function",
"getTemplateCoordLocal",
"(",
"refCoord",
")",
"{",
"let",
"templateOffset",
"=",
"lastTemplateOffset",
";",
"let",
"refOffset",
"=",
"lastRefOffset",
";",
"for",
"(",
"let",
"i",
"=",
"lastCigar",
";",
"i",
"<",
"cigarOps",
".",
"length",
"&&",
"refOffset",
"<=",
"refCoord",
";",
"i",
"+=",
"2",
",",
"lastCigar",
"=",
"i",
")",
"{",
"const",
"len",
"=",
"+",
"cigarOps",
"[",
"i",
"]",
";",
"const",
"op",
"=",
"cigarOps",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"===",
"'S'",
"||",
"op",
"===",
"'I'",
")",
"{",
"templateOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'D'",
"||",
"op",
"===",
"'P'",
"||",
"op",
"===",
"'N'",
")",
"{",
"refOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"!==",
"'H'",
")",
"{",
"templateOffset",
"+=",
"len",
";",
"refOffset",
"+=",
"len",
";",
"}",
"}",
"lastTemplateOffset",
"=",
"templateOffset",
";",
"lastRefOffset",
"=",
"refOffset",
";",
"return",
"templateOffset",
"-",
"(",
"refOffset",
"-",
"refCoord",
")",
";",
"}",
"const",
"md",
"=",
"mdstring",
".",
"match",
"(",
"/(\\d+|\\^[a-z]+|[a-z])/gi",
")",
"||",
"[",
"]",
";",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"md",
".",
"length",
";",
"i",
"++",
")",
"{",
"const",
"token",
"=",
"md",
"[",
"i",
"]",
";",
"const",
"num",
"=",
"+",
"token",
";",
"if",
"(",
"!",
"Number",
".",
"isNaN",
"(",
"num",
")",
")",
"{",
"curr",
".",
"start",
"+=",
"num",
";",
"}",
"else",
"if",
"(",
"token",
".",
"startsWith",
"(",
"'^'",
")",
")",
"{",
"curr",
".",
"length",
"=",
"token",
".",
"length",
"-",
"1",
";",
"curr",
".",
"base",
"=",
"'*'",
";",
"curr",
".",
"type",
"=",
"'deletion'",
";",
"curr",
".",
"seq",
"=",
"token",
".",
"substring",
"(",
"1",
")",
";",
"nextRecord",
"(",
")",
";",
"}",
"else",
"{",
"for",
"(",
"let",
"j",
"=",
"0",
";",
"j",
"<",
"token",
".",
"length",
";",
"j",
"+=",
"1",
")",
"{",
"curr",
".",
"length",
"=",
"1",
";",
"while",
"(",
"lastSkipPos",
"<",
"skips",
".",
"length",
")",
"{",
"const",
"mismatch",
"=",
"skips",
"[",
"lastSkipPos",
"]",
";",
"if",
"(",
"curr",
".",
"start",
">=",
"mismatch",
".",
"start",
")",
"{",
"curr",
".",
"start",
"+=",
"mismatch",
".",
"length",
";",
"lastSkipPos",
"++",
";",
"}",
"else",
"{",
"break",
";",
"}",
"}",
"const",
"s",
"=",
"cigarOps",
"?",
"getTemplateCoordLocal",
"(",
"curr",
".",
"start",
")",
":",
"curr",
".",
"start",
";",
"curr",
".",
"base",
"=",
"seq",
"?",
"seq",
".",
"substr",
"(",
"s",
",",
"1",
")",
":",
"'X'",
";",
"const",
"qualScore",
"=",
"qual",
"?.",
"slice",
"(",
"s",
",",
"s",
"+",
"1",
")",
"[",
"0",
"]",
";",
"if",
"(",
"qualScore",
")",
"{",
"curr",
".",
"qual",
"=",
"qualScore",
";",
"}",
"curr",
".",
"altbase",
"=",
"token",
";",
"nextRecord",
"(",
")",
";",
"}",
"}",
"}",
"return",
"mismatchRecords",
";",
"}",
"export",
"function",
"getTemplateCoord",
"(",
"refCoord",
",",
"cigarOps",
")",
"{",
"let",
"templateOffset",
"=",
"0",
";",
"let",
"refOffset",
"=",
"0",
";",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"cigarOps",
".",
"length",
"&&",
"refOffset",
"<=",
"refCoord",
";",
"i",
"+=",
"2",
")",
"{",
"const",
"len",
"=",
"+",
"cigarOps",
"[",
"i",
"]",
";",
"const",
"op",
"=",
"cigarOps",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"===",
"'S'",
"||",
"op",
"===",
"'I'",
")",
"{",
"templateOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'D'",
"||",
"op",
"===",
"'P'",
")",
"{",
"refOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"!==",
"'H'",
")",
"{",
"templateOffset",
"+=",
"len",
";",
"refOffset",
"+=",
"len",
";",
"}",
"}",
"return",
"templateOffset",
"-",
"(",
"refOffset",
"-",
"refCoord",
")",
";",
"}",
"export",
"function",
"getMismatches",
"(",
"cigarString",
",",
"mdString",
",",
"seq",
",",
"qual",
"?",
")",
"{",
"let",
"mismatches",
"=",
"[",
"]",
";",
"let",
"cigarOps",
"=",
"[",
"]",
";",
"if",
"(",
"cigarString",
")",
"{",
"cigarOps",
"=",
"parseCigar",
"(",
"cigarString",
")",
";",
"mismatches",
"=",
"mismatches",
".",
"concat",
"(",
"cigarToMismatches",
"(",
"cigarOps",
",",
"seq",
",",
"qual",
")",
")",
";",
"}",
"if",
"(",
"mdString",
")",
"{",
"mismatches",
"=",
"mismatches",
".",
"concat",
"(",
"mdToMismatches",
"(",
"mdString",
",",
"cigarOps",
",",
"mismatches",
",",
"seq",
",",
"qual",
")",
")",
";",
"}",
"const",
"seen",
"=",
"{",
"}",
";",
"return",
"mismatches",
".",
"filter",
"(",
"m",
"=>",
"{",
"const",
"key",
"=",
"`${",
"m",
".",
"type",
"},${",
"m",
".",
"start",
"},${",
"m",
".",
"length",
"}`",
";",
"const",
"s",
"=",
"seen",
"[",
"key",
"]",
";",
"seen",
"[",
"key",
"]",
"=",
"true",
";",
"return",
"!",
"s",
";",
"}",
")",
";",
"}",
"export",
"function",
"generateMD",
"(",
"target",
",",
"query",
",",
"cigar",
")",
"{",
"let",
"queryOffset",
"=",
"0",
";",
"let",
"targetOffset",
"=",
"0",
";",
"let",
"lengthMD",
"=",
"0",
";",
"if",
"(",
"!",
"target",
")",
"{",
"console",
".",
"warn",
"(",
"'no ref supplied to generateMD'",
")",
";",
"return",
"''",
";",
"}",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"let",
"str",
"=",
"''",
";",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"cigarOps",
".",
"length",
";",
"i",
"+=",
"2",
")",
"{",
"const",
"len",
"=",
"+",
"cigarOps",
"[",
"i",
"]",
";",
"const",
"op",
"=",
"cigarOps",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"===",
"'M'",
"||",
"op",
"===",
"'X'",
"||",
"op",
"===",
"'='",
")",
"{",
"for",
"(",
"let",
"j",
"=",
"0",
";",
"j",
"<",
"len",
";",
"j",
"++",
")",
"{",
"if",
"(",
"query",
"[",
"queryOffset",
"+",
"j",
"]",
".",
"toLowerCase",
"(",
")",
"!==",
"target",
"[",
"targetOffset",
"+",
"j",
"]",
".",
"toLowerCase",
"(",
")",
")",
"{",
"str",
"+=",
"`${",
"lengthMD",
"}${",
"target",
"[",
"targetOffset",
"+",
"j",
"]",
".",
"toUpperCase",
"(",
")",
"}`",
";",
"lengthMD",
"=",
"0",
";",
"}",
"else",
"{",
"lengthMD",
"++",
";",
"}",
"}",
"queryOffset",
"+=",
"len",
";",
"targetOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'I'",
")",
"{",
"queryOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'D'",
")",
"{",
"let",
"tmp",
"=",
"''",
";",
"for",
"(",
"let",
"j",
"=",
"0",
";",
"j",
"<",
"len",
";",
"j",
"++",
")",
"{",
"tmp",
"+=",
"target",
"[",
"targetOffset",
"+",
"j",
"]",
".",
"toUpperCase",
"(",
")",
";",
"}",
"str",
"+=",
"`${",
"lengthMD",
"}^${",
"tmp",
"}`",
";",
"lengthMD",
"=",
"0",
";",
"targetOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'N'",
")",
"{",
"targetOffset",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'S'",
")",
"{",
"queryOffset",
"+=",
"len",
";",
"}",
"}",
"if",
"(",
"lengthMD",
">",
"0",
")",
"{",
"str",
"+=",
"lengthMD",
";",
"}",
"return",
"str",
";",
"}",
"export",
"function",
"*",
"getNextRefPos",
"(",
"cigarOps",
",",
"positions",
")",
"{",
"let",
"cigarIdx",
"=",
"0",
";",
"let",
"readPos",
"=",
"0",
";",
"let",
"refPos",
"=",
"0",
";",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"positions",
".",
"length",
";",
"i",
"++",
")",
"{",
"const",
"pos",
"=",
"positions",
"[",
"i",
"]",
";",
"for",
"(",
";",
"cigarIdx",
"<",
"cigarOps",
".",
"length",
"&&",
"readPos",
"<",
"pos",
";",
"cigarIdx",
"+=",
"2",
")",
"{",
"const",
"len",
"=",
"+",
"cigarOps",
"[",
"cigarIdx",
"]",
";",
"const",
"op",
"=",
"cigarOps",
"[",
"cigarIdx",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"===",
"'S'",
"||",
"op",
"===",
"'I'",
")",
"{",
"readPos",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'D'",
"||",
"op",
"===",
"'N'",
")",
"{",
"refPos",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'M'",
"||",
"op",
"===",
"'X'",
"||",
"op",
"===",
"'='",
")",
"{",
"readPos",
"+=",
"len",
";",
"refPos",
"+=",
"len",
";",
"}",
"}",
"yield",
"positions",
"[",
"i",
"]",
"-",
"readPos",
"+",
"refPos",
";",
"}",
"}",
"export",
"function",
"getModificationPositions",
"(",
"mm",
",",
"fseq",
",",
"fstrand",
")",
"{",
"const",
"seq",
"=",
"fstrand",
"===",
"-",
"1",
"?",
"revcom",
"(",
"fseq",
")",
":",
"fseq",
";",
"return",
"mm",
".",
"split",
"(",
"';'",
")",
".",
"filter",
"(",
"mod",
"=>",
"!",
"!",
"mod",
")",
".",
"map",
"(",
"mod",
"=>",
"{",
"const",
"[",
"basemod",
",",
"...",
"skips",
"]",
"=",
"mod",
".",
"split",
"(",
"','",
")",
";",
"const",
"matches",
"=",
"basemod",
".",
"match",
"(",
"/([A-Z])([-+])([^,.?]+)([.?])?/",
")",
";",
"if",
"(",
"!",
"matches",
")",
"{",
"throw",
"new",
"Error",
"(",
"'bad format for MM tag'",
")",
";",
"}",
"const",
"[",
",",
"base",
",",
"strand",
",",
"typestr",
"]",
"=",
"matches",
";",
"const",
"types",
"=",
"typestr",
".",
"split",
"(",
"/(\\d+|.)/",
")",
".",
"filter",
"(",
"f",
"=>",
"!",
"!",
"f",
")",
";",
"if",
"(",
"strand",
"===",
"'-'",
")",
"{",
"console",
".",
"warn",
"(",
"'unsupported negative strand modifications'",
")",
";",
"return",
"{",
"type",
":",
"'unsupported'",
",",
"positions",
":",
"[",
"]",
"}",
";",
"}",
"return",
"types",
".",
"map",
"(",
"type",
"=>",
"{",
"let",
"i",
"=",
"0",
";",
"return",
"{",
"type",
",",
"positions",
":",
"skips",
".",
"map",
"(",
"score",
"=>",
"+",
"score",
")",
".",
"map",
"(",
"delta",
"=>",
"{",
"do",
"{",
"if",
"(",
"base",
"===",
"'N'",
"||",
"base",
"===",
"seq",
"[",
"i",
"]",
")",
"{",
"delta",
"--",
";",
"}",
"i",
"++",
";",
"}",
"while",
"(",
"delta",
">=",
"0",
"&&",
"i",
"<",
"seq",
".",
"length",
")",
";",
"const",
"temp",
"=",
"i",
"-",
"1",
";",
"return",
"fstrand",
"===",
"-",
"1",
"?",
"seq",
".",
"length",
"-",
"1",
"-",
"temp",
":",
"temp",
";",
"}",
")",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
"-",
"b",
")",
",",
"}",
";",
"}",
")",
";",
"}",
")",
".",
"flat",
"(",
")",
";",
"}",
"export",
"function",
"getModificationTypes",
"(",
"mm",
")",
"{",
"const",
"mods",
"=",
"mm",
".",
"split",
"(",
"';'",
")",
";",
"return",
"mods",
".",
"filter",
"(",
"mod",
"=>",
"!",
"!",
"mod",
")",
".",
"map",
"(",
"mod",
"=>",
"{",
"const",
"[",
"basemod",
"]",
"=",
"mod",
".",
"split",
"(",
"','",
")",
";",
"const",
"matches",
"=",
"basemod",
".",
"match",
"(",
"/([A-Z])([-+])([^,]+)/",
")",
";",
"if",
"(",
"!",
"matches",
")",
"{",
"throw",
"new",
"Error",
"(",
"'bad format for MM tag'",
")",
";",
"}",
"const",
"[",
",",
",",
",",
"typestr",
"]",
"=",
"matches",
";",
"return",
"typestr",
".",
"split",
"(",
"/(\\d+|.)/",
")",
".",
"filter",
"(",
"f",
"=>",
"!",
"!",
"f",
")",
";",
"}",
")",
".",
"flat",
"(",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
5,
null,
2,
null,
12,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
2,
null,
5,
null,
5,
null,
2,
null,
12,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
3,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
63,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
3,
null,
5,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
2,
null,
2,
null,
2,
null,
12,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
2,
null,
2,
null,
2,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
95,
null,
5,
null,
5,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
2,
null,
2,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
63,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
2,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
63,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660116 | [
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"linearBasicDisplayConfigSchemaFactory",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"import",
"{",
"types",
",",
"Instance",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"function",
"PileupConfigFactory",
"(",
"pluginManager",
")",
"{",
"const",
"PileupRendererConfigSchema",
"=",
"pluginManager",
".",
"getRendererType",
"(",
"'PileupRenderer'",
")",
".",
"configSchema",
";",
"const",
"SvgFeatureRendererConfigSchema",
"=",
"pluginManager",
".",
"getRendererType",
"(",
"'SvgFeatureRenderer'",
")",
".",
"configSchema",
";",
"return",
"ConfigurationSchema",
"(",
"'LinearPileupDisplay'",
",",
"{",
"defaultRendering",
":",
"{",
"type",
":",
"'stringEnum'",
",",
"model",
":",
"types",
".",
"enumeration",
"(",
"'Rendering'",
",",
"[",
"'pileup'",
",",
"'svg'",
"]",
")",
",",
"defaultValue",
":",
"'pileup'",
",",
"}",
",",
"renderers",
":",
"ConfigurationSchema",
"(",
"'RenderersConfiguration'",
",",
"{",
"PileupRenderer",
":",
"PileupRendererConfigSchema",
",",
"SvgFeatureRenderer",
":",
"SvgFeatureRendererConfigSchema",
",",
"}",
")",
",",
"renderer",
":",
"''",
",",
"maxDisplayedBpPerPx",
":",
"{",
"type",
":",
"'number'",
",",
"description",
":",
"'maximum bpPerPx that is displayed in the view'",
",",
"defaultValue",
":",
"100",
",",
"}",
",",
"colorScheme",
":",
"{",
"type",
":",
"'stringEnum'",
",",
"model",
":",
"types",
".",
"enumeration",
"(",
"'colorScheme'",
",",
"[",
"'strand'",
",",
"'normal'",
",",
"'insertSize'",
",",
"'insertSizeAndOrientation'",
",",
"'mappingQuality'",
",",
"'tag'",
",",
"]",
")",
",",
"description",
":",
"'color scheme to use'",
",",
"defaultValue",
":",
"'normal'",
",",
"}",
",",
"}",
",",
"{",
"baseConfiguration",
":",
"linearBasicDisplayConfigSchemaFactory",
"(",
"pluginManager",
")",
",",
"explicitlyTyped",
":",
"true",
",",
"}",
")",
";",
"}",
"export",
"type",
"LinearPileupDisplayConfigModel",
"=",
"ReturnType",
"<",
"typeof",
"PileupConfigFactory",
">",
";",
"export",
"type",
"LinearPileupDisplayConfig",
"=",
"Instance",
"<",
"LinearPileupDisplayConfigModel",
">",
";",
"export",
"default",
"PileupConfigFactory",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660117 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"Typography",
"from",
"'@material-ui/core/Typography'",
";",
"export",
"interface",
"LinearPileupDisplayBlurbProps",
"{",
"model",
":",
"{",
"sortedBy",
"?",
":",
"{",
"pos",
":",
"number",
";",
"refName",
":",
"number",
";",
"type",
":",
"string",
";",
"}",
";",
"}",
";",
"}",
"function",
"LinearPileupDisplayBlurb",
"(",
"props",
")",
"{",
"const",
"{",
"model",
"}",
"=",
"props",
";",
"const",
"{",
"sortedBy",
"}",
"=",
"model",
";",
"return",
"sortedBy",
"?",
"(",
"<",
"div",
"data",
"-",
"testid",
"=",
"{",
"`blurb-${",
"model",
".",
"sortedBy",
"}`",
"}",
"style",
"=",
"{",
"{",
"backgroundColor",
":",
"'white'",
"}",
"}",
">",
"<",
"Typography",
"color",
"=",
"\"secondary\"",
"variant",
"=",
"\"caption\"",
">",
"{",
"model",
".",
"sortedBy",
"?",
"`Sorted by ${",
"sortedBy",
".",
"type",
".",
"toLowerCase",
"(",
")",
"} at ${",
"sortedBy",
".",
"refName",
"}:${",
"sortedBy",
".",
"pos",
"}`",
":",
"null",
"}",
"<",
"/Typography>",
"<",
"/div>) : null;",
"}",
"export",
"default",
"observer",
"(",
"LinearPileupDisplayBlurb",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660118 | [
"import",
"{",
"BlockSet",
"}",
"from",
"'@jbrowse/core/util/blockTypes'",
";",
"import",
"{",
"getSession",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"getRpcSessionId",
"}",
"from",
"'@jbrowse/core/util/tracks'",
";",
"import",
"{",
"IAnyStateTreeNode",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"{",
"AnyConfigurationModel",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"export",
"async",
"function",
"getUniqueTagValues",
"(",
"self",
",",
"colorScheme",
",",
"blocks",
",",
"opts",
"?",
")",
"{",
"const",
"{",
"rpcManager",
"}",
"=",
"getSession",
"(",
"self",
")",
";",
"const",
"{",
"adapterConfig",
"}",
"=",
"self",
";",
"const",
"sessionId",
"=",
"getRpcSessionId",
"(",
"self",
")",
";",
"const",
"values",
"=",
"await",
"rpcManager",
".",
"call",
"(",
"getRpcSessionId",
"(",
"self",
")",
",",
"'PileupGetGlobalValueForTag'",
",",
"{",
"adapterConfig",
",",
"tag",
":",
"colorScheme",
".",
"tag",
",",
"sessionId",
",",
"regions",
":",
"blocks",
".",
"contentBlocks",
",",
"...",
"opts",
",",
"}",
")",
";",
"return",
"values",
"as",
"string",
"[",
"]",
";",
"}",
"export",
"async",
"function",
"getUniqueModificationValues",
"(",
"self",
",",
"adapterConfig",
",",
"colorScheme",
",",
"blocks",
",",
"opts",
"?",
")",
"{",
"const",
"{",
"rpcManager",
"}",
"=",
"getSession",
"(",
"self",
")",
";",
"const",
"sessionId",
"=",
"getRpcSessionId",
"(",
"self",
")",
";",
"const",
"values",
"=",
"await",
"rpcManager",
".",
"call",
"(",
"sessionId",
",",
"'PileupGetVisibleModifications'",
",",
"{",
"adapterConfig",
",",
"tag",
":",
"colorScheme",
".",
"tag",
",",
"sessionId",
",",
"regions",
":",
"blocks",
".",
"contentBlocks",
",",
"...",
"opts",
",",
"}",
")",
";",
"return",
"values",
"as",
"string",
"[",
"]",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
6,
null,
0,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
9615,
null,
6,
null,
0,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660119 | [
"import",
"React",
",",
"{",
"useState",
"}",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"Button",
",",
"Dialog",
",",
"DialogContent",
",",
"DialogTitle",
",",
"IconButton",
",",
"TextField",
",",
"Typography",
",",
"makeStyles",
",",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"CloseIcon",
"from",
"'@material-ui/icons/Close'",
";",
"const",
"useStyles",
"=",
"makeStyles",
"(",
"theme",
"=>",
"(",
"{",
"root",
":",
"{",
"width",
":",
"300",
",",
"}",
",",
"closeButton",
":",
"{",
"position",
":",
"'absolute'",
",",
"right",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"top",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"color",
":",
"theme",
".",
"palette",
".",
"grey",
"[",
"500",
"]",
",",
"}",
",",
"}",
")",
")",
";",
"function",
"ColorByTagDlg",
"(",
"props",
")",
"{",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"const",
"{",
"model",
",",
"handleClose",
"}",
"=",
"props",
";",
"const",
"[",
"tag",
",",
"setTag",
"]",
"=",
"useState",
"(",
"''",
")",
";",
"const",
"validTag",
"=",
"tag",
".",
"match",
"(",
"/^[A-Za-z][A-Za-z0-9]$/",
")",
";",
"return",
"(",
"<",
"Dialog",
"open",
"onClose",
"=",
"{",
"handleClose",
"}",
">",
"<",
"DialogTitle",
">",
"Color",
"by",
"tag",
"<",
"IconButton",
"aria",
"-",
"label",
"=",
"\"close\"",
"className",
"=",
"{",
"classes",
".",
"closeButton",
"}",
"onClick",
"=",
"{",
"handleClose",
"}",
">",
"<",
"CloseIcon",
"/>",
"<",
"/IconButton>",
"<",
"/DialogTitle>",
"<",
"DialogContent",
"style",
"=",
"{",
"{",
"overflowX",
":",
"'hidden'",
"}",
"}",
">",
"<",
"div",
"className",
"=",
"{",
"classes",
".",
"root",
"}",
">",
"<",
"Typography",
">",
"Enter",
"tag",
"to",
"color",
"by",
":",
"<",
"/Typography>",
"<",
"Typography",
"color",
"=",
"\"textSecondary\"",
">",
"Examples",
":",
"XS",
"or",
"TS",
"for",
"RNA",
"-",
"seq",
"inferred",
"read",
"strand",
",",
"ts",
"(",
"lower",
"-",
"case",
")",
"for",
"minimap2",
"read",
"strand",
",",
"HP",
"for",
"haplotype",
",",
"RG",
"for",
"read",
"group",
",",
"etc",
".",
"<",
"/Typography>",
"<",
"TextField",
"value",
"=",
"{",
"tag",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"setTag",
"(",
"event",
".",
"target",
".",
"value",
")",
";",
"}",
"}",
"placeholder",
"=",
"\"Enter tag name\"",
"inputProps",
"=",
"{",
"{",
"maxLength",
":",
"2",
",",
"'data-testid'",
":",
"'color-tag-name-input'",
",",
"}",
"}",
"error",
"=",
"{",
"tag",
".",
"length",
"===",
"2",
"&&",
"!",
"validTag",
"}",
"helperText",
"=",
"{",
"tag",
".",
"length",
"===",
"2",
"&&",
"!",
"validTag",
"?",
"'Not a valid tag'",
":",
"''",
"}",
"autoComplete",
"=",
"\"off\"",
"data",
"-",
"testid",
"=",
"\"color-tag-name\"",
"/",
">",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"primary\"",
"style",
"=",
"{",
"{",
"marginLeft",
":",
"20",
"}",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"model",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'tag'",
",",
"tag",
",",
"}",
")",
";",
"handleClose",
"(",
")",
";",
"}",
"}",
"disabled",
"=",
"{",
"!",
"validTag",
"}",
">",
"Submit",
"<",
"/Button>",
"<",
"/div>",
"<",
"/DialogContent>",
"<",
"/Dialog>);",
"}",
"export",
"default",
"observer",
"(",
"ColorByTagDlg",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
80,
null,
null,
null,
73,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
6,
null,
null,
null,
80,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
63,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660120 | [
"import",
"React",
",",
"{",
"useState",
"}",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"Button",
",",
"Dialog",
",",
"DialogContent",
",",
"DialogTitle",
",",
"IconButton",
",",
"Link",
",",
"Paper",
",",
"TextField",
",",
"Typography",
",",
"makeStyles",
",",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"CloseIcon",
"from",
"'@material-ui/icons/Close'",
";",
"const",
"useStyles",
"=",
"makeStyles",
"(",
"theme",
"=>",
"(",
"{",
"root",
":",
"{",
"width",
":",
"500",
",",
"}",
",",
"paper",
":",
"{",
"padding",
":",
"theme",
".",
"spacing",
"(",
"2",
")",
",",
"margin",
":",
"theme",
".",
"spacing",
"(",
"2",
")",
",",
"}",
",",
"closeButton",
":",
"{",
"position",
":",
"'absolute'",
",",
"right",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"top",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"color",
":",
"theme",
".",
"palette",
".",
"grey",
"[",
"500",
"]",
",",
"}",
",",
"field",
":",
"{",
"margin",
":",
"theme",
".",
"spacing",
"(",
"2",
")",
",",
"}",
",",
"}",
")",
")",
";",
"const",
"flagNames",
"=",
"[",
"'read paired'",
",",
"'read mapped in proper pair'",
",",
"'read unmapped'",
",",
"'mate unmapped'",
",",
"'read reverse strand'",
",",
"'mate reverse strand'",
",",
"'first in pair'",
",",
"'second in pair'",
",",
"'not primary alignment'",
",",
"'read fails platform/vendor quality checks'",
",",
"'read is PCR or optical duplicate'",
",",
"'supplementary alignment'",
",",
"]",
";",
"function",
"Bitmask",
"(",
"props",
")",
"{",
"const",
"{",
"flag",
"=",
"0",
",",
"setFlag",
"}",
"=",
"props",
";",
"return",
"(",
"<",
">",
"<",
"TextField",
"type",
"=",
"\"number\"",
"value",
"=",
"{",
"flag",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"setFlag",
"(",
"+",
"event",
".",
"target",
".",
"value",
")",
"}",
"/>",
"{",
"flagNames",
".",
"map",
"(",
"(",
"name",
",",
"index",
")",
"=>",
"{",
"const",
"val",
"=",
"flag",
"&",
"(",
"1",
"<<",
"index",
")",
";",
"const",
"key",
"=",
"`${",
"name",
"}_${",
"val",
"}`",
";",
"return",
"(",
"<",
"div",
"key",
"=",
"{",
"key",
"}",
">",
"<",
"input",
"type",
"=",
"\"checkbox\"",
"checked",
"=",
"{",
"Boolean",
"(",
"val",
")",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"if",
"(",
"event",
".",
"target",
".",
"checked",
")",
"{",
"setFlag",
"(",
"flag",
"|",
"(",
"1",
"<<",
"index",
")",
")",
";",
"}",
"else",
"{",
"setFlag",
"(",
"flag",
"&",
"~",
"(",
"1",
"<<",
"index",
")",
")",
";",
"}",
"}",
"}",
"/>",
"<",
"label",
"htmlFor",
"=",
"{",
"key",
"}",
">",
"{",
"name",
"}",
"<",
"/label>",
"<",
"/div>);",
"}",
")",
"}",
"<",
"/>);",
"}",
"function",
"FilterByTagDlg",
"(",
"props",
")",
"{",
"const",
"{",
"model",
",",
"handleClose",
"}",
"=",
"props",
";",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"const",
"{",
"filterBy",
"}",
"=",
"model",
";",
"const",
"[",
"flagInclude",
",",
"setFlagInclude",
"]",
"=",
"useState",
"(",
"filterBy",
"?.",
"flagInclude",
")",
";",
"const",
"[",
"flagExclude",
",",
"setFlagExclude",
"]",
"=",
"useState",
"(",
"filterBy",
"?.",
"flagExclude",
")",
";",
"const",
"[",
"tag",
",",
"setTag",
"]",
"=",
"useState",
"(",
"filterBy",
"?.",
"tagFilter",
"?.",
"tag",
"||",
"''",
")",
";",
"const",
"[",
"tagValue",
",",
"setTagValue",
"]",
"=",
"useState",
"(",
"filterBy",
"?.",
"tagFilter",
"?.",
"value",
"||",
"''",
")",
";",
"const",
"[",
"readName",
",",
"setReadName",
"]",
"=",
"useState",
"(",
"filterBy",
"?.",
"readName",
"||",
"''",
")",
";",
"const",
"validTag",
"=",
"tag",
".",
"match",
"(",
"/^[A-Za-z][A-Za-z0-9]$/",
")",
";",
"const",
"site",
"=",
"'https://broadinstitute.github.io/picard/explain-flags.html'",
";",
"return",
"(",
"<",
"Dialog",
"open",
"onClose",
"=",
"{",
"handleClose",
"}",
">",
"<",
"DialogTitle",
">",
"Filter",
"options",
"<",
"IconButton",
"aria",
"-",
"label",
"=",
"\"close\"",
"className",
"=",
"{",
"classes",
".",
"closeButton",
"}",
"onClick",
"=",
"{",
"handleClose",
"}",
">",
"<",
"CloseIcon",
"/>",
"<",
"/IconButton>",
"<",
"/DialogTitle>",
"<",
"DialogContent",
">",
"<",
"Typography",
">",
"Set",
"filter",
"bitmask",
"options",
".",
"Refer",
"to",
"<",
"Link",
"href",
"=",
"{",
"site",
"}",
">",
"{",
"site",
"}",
"<",
"/Link>{' '}",
"for",
"details",
"<",
"/Typography>",
"<",
"div",
"className",
"=",
"{",
"classes",
".",
"root",
"}",
">",
"<",
"Paper",
"className",
"=",
"{",
"classes",
".",
"paper",
"}",
"variant",
"=",
"\"outlined\"",
">",
"<",
"div",
"style",
"=",
"{",
"{",
"display",
":",
"'flex'",
"}",
"}",
">",
"<",
"div",
">",
"<",
"Typography",
">",
"Read",
"must",
"have",
"ALL",
"these",
"flags",
"<",
"/Typography>",
"<",
"Bitmask",
"flag",
"=",
"{",
"flagInclude",
"}",
"setFlag",
"=",
"{",
"setFlagInclude",
"}",
"/",
">",
"<",
"/div>",
"<",
"div",
">",
"<",
"Typography",
">",
"Read",
"must",
"have",
"NONE",
"of",
"these",
"flags",
"<",
"/Typography>",
"<",
"Bitmask",
"flag",
"=",
"{",
"flagExclude",
"}",
"setFlag",
"=",
"{",
"setFlagExclude",
"}",
"/",
">",
"<",
"/div>",
"<",
"/div>",
"<",
"/Paper>",
"<",
"Paper",
"className",
"=",
"{",
"classes",
".",
"paper",
"}",
"variant",
"=",
"\"outlined\"",
">",
"<",
"Typography",
">",
"Filter",
"by",
"tag",
"name",
"and",
"value",
".",
"Use",
"*",
"in",
"the",
"value",
"field",
"to",
"get",
"all",
"reads",
"containing",
"any",
"value",
"for",
"that",
"tag",
".",
"Example",
":",
"filter",
"tag",
"name",
"SA",
"with",
"value",
"*",
"to",
"get",
"all",
"split",
"/",
"supplementary",
"reads",
".",
"Other",
"examples",
"include",
"HP",
"for",
"haplotype",
",",
"or",
"RG",
"for",
"read",
"group",
"<",
"/Typography>",
"<",
"TextField",
"className",
"=",
"{",
"classes",
".",
"field",
"}",
"value",
"=",
"{",
"tag",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"setTag",
"(",
"event",
".",
"target",
".",
"value",
")",
";",
"}",
"}",
"placeholder",
"=",
"\"Enter tag name\"",
"inputProps",
"=",
"{",
"{",
"maxLength",
":",
"2",
",",
"'data-testid'",
":",
"'color-tag-name-input'",
",",
"}",
"}",
"error",
"=",
"{",
"tag",
".",
"length",
"===",
"2",
"&&",
"!",
"validTag",
"}",
"helperText",
"=",
"{",
"tag",
".",
"length",
"===",
"2",
"&&",
"!",
"validTag",
"?",
"'Not a valid tag'",
":",
"''",
"}",
"data",
"-",
"testid",
"=",
"\"color-tag-name\"",
"/",
">",
"<",
"TextField",
"className",
"=",
"{",
"classes",
".",
"field",
"}",
"value",
"=",
"{",
"tagValue",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"setTagValue",
"(",
"event",
".",
"target",
".",
"value",
")",
";",
"}",
"}",
"placeholder",
"=",
"\"Enter tag value\"",
"inputProps",
"=",
"{",
"{",
"'data-testid'",
":",
"'color-tag-name-input'",
",",
"}",
"}",
"data",
"-",
"testid",
"=",
"\"color-tag-value\"",
"/",
">",
"<",
"/Paper>",
"<",
"Paper",
"className",
"=",
"{",
"classes",
".",
"paper",
"}",
"variant",
"=",
"\"outlined\"",
">",
"<",
"Typography",
">",
"Filter",
"by",
"read",
"name",
"<",
"/Typography>",
"<",
"TextField",
"className",
"=",
"{",
"classes",
".",
"field",
"}",
"value",
"=",
"{",
"readName",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"setReadName",
"(",
"event",
".",
"target",
".",
"value",
")",
";",
"}",
"}",
"placeholder",
"=",
"\"Enter read name\"",
"inputProps",
"=",
"{",
"{",
"'data-testid'",
":",
"'color-tag-readname-input'",
",",
"}",
"}",
"data",
"-",
"testid",
"=",
"\"color-tag-readname\"",
"/",
">",
"<",
"/Paper>",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"primary\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"model",
".",
"setFilterBy",
"(",
"{",
"flagInclude",
",",
"flagExclude",
",",
"readName",
",",
"tagFilter",
":",
"tag",
"!==",
"''",
"?",
"{",
"tag",
",",
"value",
":",
"tagValue",
",",
"}",
":",
"undefined",
",",
"}",
")",
";",
"handleClose",
"(",
")",
";",
"}",
"}",
">",
"Submit",
"<",
"/Button>",
"<",
"/div>",
"<",
"/DialogContent>",
"<",
"/Dialog>);",
"}",
"export",
"default",
"observer",
"(",
"FilterByTagDlg",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
80,
null,
null,
null,
73,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
64,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660121 | [
"import",
"React",
",",
"{",
"useState",
"}",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"Button",
",",
"Dialog",
",",
"DialogContent",
",",
"DialogTitle",
",",
"IconButton",
",",
"TextField",
",",
"Typography",
",",
"makeStyles",
",",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"CloseIcon",
"from",
"'@material-ui/icons/Close'",
";",
"const",
"useStyles",
"=",
"makeStyles",
"(",
"theme",
"=>",
"(",
"{",
"root",
":",
"{",
"margin",
":",
"0",
",",
"padding",
":",
"theme",
".",
"spacing",
"(",
"2",
")",
",",
"}",
",",
"closeButton",
":",
"{",
"position",
":",
"'absolute'",
",",
"right",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"top",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"color",
":",
"theme",
".",
"palette",
".",
"grey",
"[",
"500",
"]",
",",
"}",
",",
"}",
")",
")",
";",
"function",
"SortByTagDlg",
"(",
"props",
")",
"{",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"const",
"{",
"model",
",",
"handleClose",
"}",
"=",
"props",
";",
"const",
"[",
"tag",
",",
"setTag",
"]",
"=",
"useState",
"(",
"''",
")",
";",
"const",
"validTag",
"=",
"tag",
".",
"match",
"(",
"/^[A-Za-z][A-Za-z0-9]$/",
")",
";",
"return",
"(",
"<",
"Dialog",
"open",
"onClose",
"=",
"{",
"handleClose",
"}",
">",
"<",
"DialogTitle",
">",
"Sort",
"by",
"tag",
"<",
"IconButton",
"aria",
"-",
"label",
"=",
"\"close\"",
"className",
"=",
"{",
"classes",
".",
"closeButton",
"}",
"onClick",
"=",
"{",
"handleClose",
"}",
">",
"<",
"CloseIcon",
"/>",
"<",
"/IconButton>",
"<",
"/DialogTitle>",
"<",
"DialogContent",
">",
"<",
"div",
">",
"<",
"Typography",
">",
"Set",
"the",
"tag",
"to",
"sort",
"by",
"<",
"/Typography>",
"<",
"Typography",
"color",
"=",
"\"textSecondary\"",
">",
"Examples",
":",
"HP",
"for",
"haplotype",
",",
"RG",
"for",
"read",
"group",
",",
"etc",
".",
"<",
"/Typography>",
"<",
"TextField",
"value",
"=",
"{",
"tag",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"setTag",
"(",
"event",
".",
"target",
".",
"value",
")",
";",
"}",
"}",
"placeholder",
"=",
"\"Enter tag name\"",
"inputProps",
"=",
"{",
"{",
"maxLength",
":",
"2",
",",
"'data-testid'",
":",
"'sort-tag-name-input'",
",",
"}",
"}",
"error",
"=",
"{",
"tag",
".",
"length",
"===",
"2",
"&&",
"!",
"validTag",
"}",
"helperText",
"=",
"{",
"tag",
".",
"length",
"===",
"2",
"&&",
"!",
"validTag",
"?",
"'Not a valid tag'",
":",
"''",
"}",
"autoComplete",
"=",
"\"off\"",
"data",
"-",
"testid",
"=",
"\"sort-tag-name\"",
"/",
">",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"primary\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"model",
".",
"setSortedBy",
"(",
"'tag'",
",",
"tag",
")",
";",
"handleClose",
"(",
")",
";",
"}",
"}",
">",
"Submit",
"<",
"/Button>",
"<",
"/div>",
"<",
"/DialogContent>",
"<",
"/Dialog>);",
"}",
"export",
"default",
"observer",
"(",
"SortByTagDlg",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
80,
null,
null,
null,
73,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
6,
null,
null,
null,
80,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
63,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660122 | [
"import",
"React",
",",
"{",
"useState",
"}",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"Button",
",",
"TextField",
",",
"Typography",
",",
"IconButton",
",",
"Dialog",
",",
"DialogContent",
",",
"DialogTitle",
",",
"Checkbox",
",",
"FormControlLabel",
",",
"makeStyles",
",",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"CloseIcon",
"from",
"'@material-ui/icons/Close'",
";",
"const",
"useStyles",
"=",
"makeStyles",
"(",
"theme",
"=>",
"(",
"{",
"root",
":",
"{",
"margin",
":",
"theme",
".",
"spacing",
"(",
"4",
")",
",",
"}",
",",
"closeButton",
":",
"{",
"position",
":",
"'absolute'",
",",
"right",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"top",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"color",
":",
"theme",
".",
"palette",
".",
"grey",
"[",
"500",
"]",
",",
"}",
",",
"}",
")",
")",
";",
"function",
"SetFeatureHeightDlg",
"(",
"props",
")",
"{",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"const",
"{",
"model",
",",
"handleClose",
"}",
"=",
"props",
";",
"const",
"{",
"featureHeightSetting",
",",
"noSpacing",
":",
"noSpacingSetting",
"}",
"=",
"model",
";",
"const",
"[",
"height",
",",
"setHeight",
"]",
"=",
"useState",
"(",
"`${",
"featureHeightSetting",
"}`",
")",
";",
"const",
"[",
"noSpacing",
",",
"setNoSpacing",
"]",
"=",
"useState",
"(",
"noSpacingSetting",
")",
";",
"const",
"ok",
"=",
"height",
"!==",
"''",
"&&",
"!",
"Number",
".",
"isNaN",
"(",
"+",
"height",
")",
";",
"return",
"(",
"<",
"Dialog",
"open",
"onClose",
"=",
"{",
"handleClose",
"}",
">",
"<",
"DialogTitle",
">",
"Set",
"feature",
"height",
"<",
"IconButton",
"className",
"=",
"{",
"classes",
".",
"closeButton",
"}",
"onClick",
"=",
"{",
"handleClose",
"}",
">",
"<",
"CloseIcon",
"/>",
"<",
"/IconButton>",
"<",
"/DialogTitle>",
"<",
"DialogContent",
">",
"<",
"Typography",
">",
"Adjust",
"the",
"feature",
"height",
"and",
"whether",
"there",
"is",
"any",
"spacing",
"between",
"features",
".",
"Setting",
"feature",
"height",
"to",
"1",
"and",
"removing",
"spacing",
"makes",
"the",
"display",
"very",
"compact",
"<",
"/Typography>",
"<",
"div",
"className",
"=",
"{",
"classes",
".",
"root",
"}",
">",
"<",
"Typography",
">",
"Enter",
"feature",
"height",
":",
"<",
"/Typography>",
"<",
"TextField",
"value",
"=",
"{",
"height",
"}",
"onChange",
"=",
"{",
"event",
"=>",
"{",
"setHeight",
"(",
"event",
".",
"target",
".",
"value",
")",
";",
"}",
"}",
"/>",
"<",
"FormControlLabel",
"control",
"=",
"{",
"<",
"Checkbox",
"checked",
"=",
"{",
"!",
"!",
"noSpacing",
"}",
"onChange",
"=",
"{",
"(",
")",
"=>",
"setNoSpacing",
"(",
"val",
"=>",
"!",
"val",
")",
"}",
"/>} label=\"Remove spacing between features in y-direction?\"/",
">",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"primary\"",
"type",
"=",
"\"submit\"",
"style",
"=",
"{",
"{",
"marginLeft",
":",
"20",
"}",
"}",
"disabled",
"=",
"{",
"!",
"ok",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"model",
".",
"setFeatureHeight",
"(",
"height",
"!==",
"''",
"&&",
"!",
"Number",
".",
"isNaN",
"(",
"+",
"height",
")",
"?",
"+",
"height",
":",
"undefined",
")",
";",
"model",
".",
"setNoSpacing",
"(",
"noSpacing",
")",
";",
"handleClose",
"(",
")",
";",
"}",
"}",
">",
"Submit",
"<",
"/Button>",
"<",
"/div>",
"<",
"/DialogContent>",
"<",
"/Dialog>);",
"}",
"export",
"default",
"observer",
"(",
"SetFeatureHeightDlg",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
80,
null,
null,
null,
73,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
6,
null,
null,
null,
80,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660123 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"ObservableMap",
"}",
"from",
"'mobx'",
";",
"import",
"{",
"Button",
",",
"Dialog",
",",
"DialogContent",
",",
"DialogTitle",
",",
"IconButton",
",",
"Typography",
",",
"CircularProgress",
",",
"makeStyles",
",",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"CloseIcon",
"from",
"'@material-ui/icons/Close'",
";",
"const",
"useStyles",
"=",
"makeStyles",
"(",
"theme",
"=>",
"(",
"{",
"root",
":",
"{",
"}",
",",
"closeButton",
":",
"{",
"position",
":",
"'absolute'",
",",
"right",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"top",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"color",
":",
"theme",
".",
"palette",
".",
"grey",
"[",
"500",
"]",
",",
"}",
",",
"table",
":",
"{",
"border",
":",
"'1px solid #888'",
",",
"margin",
":",
"theme",
".",
"spacing",
"(",
"4",
")",
",",
"'& td'",
":",
"{",
"padding",
":",
"theme",
".",
"spacing",
"(",
"1",
")",
",",
"}",
",",
"}",
",",
"}",
")",
")",
";",
"function",
"ModificationTable",
"(",
"{",
"modifications",
",",
"}",
")",
"{",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"return",
"(",
"<",
"table",
"className",
"=",
"{",
"classes",
".",
"table",
"}",
">",
"<",
"tbody",
">",
"{",
"modifications",
".",
"map",
"(",
"(",
"[",
"key",
",",
"value",
"]",
")",
"=>",
"(",
"<",
"tr",
"key",
"=",
"{",
"key",
"}",
">",
"<",
"td",
">",
"{",
"key",
"}",
"<",
"/td>",
"<",
"td",
">",
"{",
"value",
"}",
"<",
"/td>",
"<",
"td",
"style",
"=",
"{",
"{",
"width",
":",
"'1em'",
",",
"background",
":",
"value",
",",
"}",
"}",
"/",
">",
"<",
"/tr>))}",
"<",
"/tbody>",
"<",
"/table>);",
"}",
"function",
"ColorByTagDlg",
"(",
"props",
")",
"{",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"const",
"{",
"model",
",",
"handleClose",
"}",
"=",
"props",
";",
"const",
"{",
"colorBy",
",",
"modificationTagMap",
"}",
"=",
"model",
";",
"const",
"modifications",
"=",
"[",
"...",
"modificationTagMap",
".",
"entries",
"(",
")",
"]",
";",
"return",
"(",
"<",
"Dialog",
"open",
"onClose",
"=",
"{",
"handleClose",
"}",
">",
"<",
"DialogTitle",
">",
"Color",
"by",
"modifications",
"<",
"IconButton",
"aria",
"-",
"label",
"=",
"\"close\"",
"className",
"=",
"{",
"classes",
".",
"closeButton",
"}",
"onClick",
"=",
"{",
"handleClose",
"}",
">",
"<",
"CloseIcon",
"/>",
"<",
"/IconButton>",
"<",
"/DialogTitle>",
"<",
"DialogContent",
">",
"<",
"div",
"className",
"=",
"{",
"classes",
".",
"root",
"}",
">",
"<",
"Typography",
">",
"You",
"can",
"choose",
"to",
"color",
"the",
"modifications",
"in",
"the",
"BAM",
"/",
"CRAM",
"MM",
"/",
"ML",
"specification",
"using",
"this",
"dialog",
".",
"Choosing",
"modifications",
"colors",
"the",
"modified",
"positions",
"and",
"can",
"color",
"multiple",
"modification",
"types",
".",
"Choosing",
"the",
"methylation",
"setting",
"colors",
"methylated",
"and",
"unmethylated",
"CpG",
".",
"<",
"/Typography>",
"<",
"Typography",
">",
"Note",
":",
"you",
"can",
"revisit",
"this",
"dialog",
"to",
"see",
"the",
"current",
"mapping",
"of",
"colors",
"to",
"modification",
"type",
"for",
"the",
"modification",
"coloring",
"mode",
"<",
"/Typography>",
"<",
"div",
"style",
"=",
"{",
"{",
"margin",
":",
"20",
"}",
"}",
">",
"{",
"colorBy",
"?.",
"type",
"===",
"'modifications'",
"?",
"(",
"<",
"div",
">",
"{",
"modifications",
".",
"length",
"?",
"(",
"<",
">",
"Current",
"modification",
"-",
"type",
"-",
"to",
"-",
"color",
"mapping",
"<",
"ModificationTable",
"modifications",
"=",
"{",
"[",
"...",
"modificationTagMap",
".",
"entries",
"(",
")",
"]",
"}",
"/",
">",
"<",
"/>) : (<div>",
"<",
"Typography",
">",
"Note",
":",
"color",
"by",
"modifications",
"is",
"already",
"enabled",
".",
"Loading",
"current",
"modifications",
"...",
"<",
"/Typography>",
"<",
"CircularProgress",
"size",
"=",
"{",
"15",
"}",
"/",
">",
"<",
"/div>)}",
"<",
"/div>) : null}",
"{",
"colorBy",
"?.",
"type",
"===",
"'methylation'",
"?",
"(",
"<",
"ModificationTable",
"modifications",
"=",
"{",
"[",
"[",
"'methylated'",
",",
"'red'",
"]",
",",
"[",
"'unmethylated'",
",",
"'blue'",
"]",
",",
"]",
"}",
"/",
">",
")",
":",
"null",
"}",
"<",
"/div>",
"<",
"div",
"style",
"=",
"{",
"{",
"display",
":",
"'flex'",
"}",
"}",
">",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"primary\"",
"style",
"=",
"{",
"{",
"margin",
":",
"5",
"}",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"model",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'modifications'",
",",
"}",
")",
";",
"handleClose",
"(",
")",
";",
"}",
"}",
">",
"Modifications",
"<",
"/Button>",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"primary\"",
"style",
"=",
"{",
"{",
"margin",
":",
"5",
"}",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"model",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'methylation'",
",",
"}",
")",
";",
"handleClose",
"(",
")",
";",
"}",
"}",
">",
"Methylation",
"<",
"/Button>",
"<",
"Button",
"variant",
"=",
"\"contained\"",
"color",
"=",
"\"secondary\"",
"style",
"=",
"{",
"{",
"margin",
":",
"5",
"}",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"handleClose",
"(",
")",
"}",
">",
"Cancel",
"<",
"/Button>",
"<",
"/div>",
"<",
"/div>",
"<",
"/DialogContent>",
"<",
"/Dialog>);",
"}",
"export",
"default",
"observer",
"(",
"ColorByTagDlg",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
80,
null,
null,
null,
73,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660124 | [
"import",
"{",
"lazy",
"}",
"from",
"'react'",
";",
"import",
"{",
"ConfigurationReference",
",",
"readConfObject",
",",
"getConf",
",",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"getRpcSessionId",
"}",
"from",
"'@jbrowse/core/util/tracks'",
";",
"import",
"{",
"getSession",
",",
"isSessionModelWithWidgets",
",",
"getContainingView",
",",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"VisibilityIcon",
"from",
"'@material-ui/icons/Visibility'",
";",
"import",
"{",
"ContentCopy",
"as",
"ContentCopyIcon",
"}",
"from",
"'@jbrowse/core/ui/Icons'",
";",
"import",
"{",
"LinearGenomeViewModel",
",",
"BaseLinearDisplay",
",",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"import",
"{",
"cast",
",",
"types",
",",
"addDisposer",
",",
"getEnv",
",",
"Instance",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"copy",
"from",
"'copy-to-clipboard'",
";",
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"MenuOpenIcon",
"from",
"'@material-ui/icons/MenuOpen'",
";",
"import",
"SortIcon",
"from",
"'@material-ui/icons/Sort'",
";",
"import",
"PaletteIcon",
"from",
"'@material-ui/icons/Palette'",
";",
"import",
"FilterListIcon",
"from",
"'@material-ui/icons/ClearAll'",
";",
"import",
"{",
"autorun",
",",
"observable",
"}",
"from",
"'mobx'",
";",
"import",
"{",
"AnyConfigurationModel",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"import",
"SerializableFilterChain",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'",
";",
"import",
"{",
"LinearPileupDisplayConfigModel",
"}",
"from",
"'./configSchema'",
";",
"import",
"LinearPileupDisplayBlurb",
"from",
"'./components/LinearPileupDisplayBlurb'",
";",
"import",
"{",
"getUniqueTagValues",
",",
"getUniqueModificationValues",
"}",
"from",
"'../shared'",
";",
"const",
"ColorByTagDlg",
"=",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./components/ColorByTag'",
")",
")",
";",
"const",
"FilterByTagDlg",
"=",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./components/FilterByTag'",
")",
")",
";",
"const",
"SortByTagDlg",
"=",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./components/SortByTag'",
")",
")",
";",
"const",
"SetFeatureHeightDlg",
"=",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./components/SetFeatureHeight'",
")",
")",
";",
"const",
"SetMaxHeightDlg",
"=",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./components/SetMaxHeight'",
")",
")",
";",
"const",
"ModificationsDlg",
"=",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./components/ColorByModifications'",
")",
")",
";",
"const",
"rendererTypes",
"=",
"new",
"Map",
"(",
"[",
"[",
"'pileup'",
",",
"'PileupRenderer'",
"]",
",",
"[",
"'svg'",
",",
"'SvgFeatureRenderer'",
"]",
",",
"]",
")",
";",
"type",
"LGV",
"=",
"LinearGenomeViewModel",
";",
"const",
"stateModelFactory",
"=",
"(",
"configSchema",
")",
"=>",
"types",
".",
"compose",
"(",
"'LinearPileupDisplay'",
",",
"BaseLinearDisplay",
",",
"types",
".",
"model",
"(",
"{",
"type",
":",
"types",
".",
"literal",
"(",
"'LinearPileupDisplay'",
")",
",",
"configuration",
":",
"ConfigurationReference",
"(",
"configSchema",
")",
",",
"showSoftClipping",
":",
"false",
",",
"featureHeight",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"number",
")",
",",
"noSpacing",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"boolean",
")",
",",
"fadeLikelihood",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"boolean",
")",
",",
"trackMaxHeight",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"number",
")",
",",
"mismatchAlpha",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"boolean",
")",
",",
"sortedBy",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"model",
"(",
"{",
"type",
":",
"types",
".",
"string",
",",
"pos",
":",
"types",
".",
"number",
",",
"tag",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"string",
")",
",",
"refName",
":",
"types",
".",
"string",
",",
"assemblyName",
":",
"types",
".",
"string",
",",
"}",
")",
")",
",",
"colorBy",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"model",
"(",
"{",
"type",
":",
"types",
".",
"string",
",",
"tag",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"string",
")",
",",
"extra",
":",
"types",
".",
"frozen",
"(",
")",
",",
"}",
")",
")",
",",
"filterBy",
":",
"types",
".",
"optional",
"(",
"types",
".",
"model",
"(",
"{",
"flagInclude",
":",
"types",
".",
"optional",
"(",
"types",
".",
"number",
",",
"0",
")",
",",
"flagExclude",
":",
"types",
".",
"optional",
"(",
"types",
".",
"number",
",",
"1540",
")",
",",
"readName",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"string",
")",
",",
"tagFilter",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"model",
"(",
"{",
"tag",
":",
"types",
".",
"string",
",",
"value",
":",
"types",
".",
"string",
"}",
")",
")",
",",
"}",
")",
",",
"{",
"}",
")",
",",
"}",
")",
")",
".",
"volatile",
"(",
"(",
")",
"=>",
"(",
"{",
"colorTagMap",
":",
"observable",
".",
"map",
"<",
"string",
",",
"string",
">",
"(",
"{",
"}",
")",
",",
"modificationTagMap",
":",
"observable",
".",
"map",
"<",
"string",
",",
"string",
">",
"(",
"{",
"}",
")",
",",
"ready",
":",
"false",
",",
"currBpPerPx",
":",
"0",
",",
"}",
")",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"setReady",
"(",
"flag",
")",
"{",
"self",
".",
"ready",
"=",
"flag",
";",
"}",
",",
"setCurrBpPerPx",
"(",
"n",
")",
"{",
"self",
".",
"currBpPerPx",
"=",
"n",
";",
"}",
",",
"setMaxHeight",
"(",
"n",
")",
"{",
"self",
".",
"trackMaxHeight",
"=",
"n",
";",
"}",
",",
"setFeatureHeight",
"(",
"n",
")",
"{",
"self",
".",
"featureHeight",
"=",
"n",
";",
"}",
",",
"setNoSpacing",
"(",
"flag",
")",
"{",
"self",
".",
"noSpacing",
"=",
"flag",
";",
"}",
",",
"setColorScheme",
"(",
"colorScheme",
")",
"{",
"self",
".",
"colorTagMap",
"=",
"observable",
".",
"map",
"(",
"{",
"}",
")",
";",
"self",
".",
"colorBy",
"=",
"cast",
"(",
"colorScheme",
")",
";",
"self",
".",
"ready",
"=",
"false",
";",
"}",
",",
"updateModificationColorMap",
"(",
"uniqueModifications",
")",
"{",
"const",
"colorPalette",
"=",
"[",
"'red'",
",",
"'blue'",
",",
"'green'",
",",
"'orange'",
",",
"'purple'",
"]",
";",
"uniqueModifications",
".",
"forEach",
"(",
"value",
"=>",
"{",
"if",
"(",
"!",
"self",
".",
"modificationTagMap",
".",
"has",
"(",
"value",
")",
")",
"{",
"const",
"totalKeys",
"=",
"[",
"...",
"self",
".",
"modificationTagMap",
".",
"keys",
"(",
")",
"]",
".",
"length",
";",
"const",
"newColor",
"=",
"colorPalette",
"[",
"totalKeys",
"]",
";",
"self",
".",
"modificationTagMap",
".",
"set",
"(",
"value",
",",
"newColor",
")",
";",
"}",
"}",
")",
";",
"}",
",",
"updateColorTagMap",
"(",
"uniqueTag",
")",
"{",
"const",
"colorPalette",
"=",
"[",
"'#BBCCEE'",
",",
"'pink'",
",",
"'#CCDDAA'",
",",
"'#EEEEBB'",
",",
"'#FFCCCC'",
",",
"'lightblue'",
",",
"'lightgreen'",
",",
"'tan'",
",",
"'#CCEEFF'",
",",
"'lightsalmon'",
",",
"]",
";",
"uniqueTag",
".",
"forEach",
"(",
"value",
"=>",
"{",
"if",
"(",
"!",
"self",
".",
"colorTagMap",
".",
"has",
"(",
"value",
")",
")",
"{",
"const",
"totalKeys",
"=",
"[",
"...",
"self",
".",
"colorTagMap",
".",
"keys",
"(",
")",
"]",
".",
"length",
";",
"const",
"newColor",
"=",
"colorPalette",
"[",
"totalKeys",
"]",
";",
"self",
".",
"colorTagMap",
".",
"set",
"(",
"value",
",",
"newColor",
")",
";",
"}",
"}",
")",
";",
"}",
",",
"}",
")",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"afterAttach",
"(",
")",
"{",
"addDisposer",
"(",
"self",
",",
"autorun",
"(",
"async",
"(",
")",
"=>",
"{",
"try",
"{",
"const",
"{",
"rpcManager",
"}",
"=",
"getSession",
"(",
"self",
")",
";",
"const",
"{",
"sortedBy",
",",
"colorBy",
"}",
"=",
"self",
";",
"const",
"view",
"=",
"getContainingView",
"(",
"self",
")",
"as",
"LGV",
";",
"if",
"(",
"colorBy",
"?.",
"tag",
")",
"{",
"const",
"uniqueTagSet",
"=",
"await",
"getUniqueTagValues",
"(",
"self",
",",
"colorBy",
",",
"view",
".",
"staticBlocks",
")",
";",
"self",
".",
"updateColorTagMap",
"(",
"uniqueTagSet",
")",
";",
"}",
"if",
"(",
"colorBy",
"?.",
"type",
"===",
"'modifications'",
")",
"{",
"const",
"uniqueModificationsSet",
"=",
"await",
"getUniqueModificationValues",
"(",
"self",
",",
"getConf",
"(",
"self",
".",
"parentTrack",
",",
"[",
"'adapter'",
"]",
")",
",",
"colorBy",
",",
"view",
".",
"staticBlocks",
")",
";",
"self",
".",
"updateModificationColorMap",
"(",
"uniqueModificationsSet",
")",
";",
"}",
"if",
"(",
"sortedBy",
")",
"{",
"const",
"{",
"pos",
",",
"refName",
",",
"assemblyName",
"}",
"=",
"sortedBy",
";",
"const",
"region",
"=",
"{",
"start",
":",
"pos",
",",
"end",
":",
"pos",
"+",
"1",
",",
"refName",
",",
"assemblyName",
",",
"}",
";",
"await",
"self",
".",
"rendererType",
".",
"renderInClient",
"(",
"rpcManager",
",",
"{",
"assemblyName",
",",
"regions",
":",
"[",
"region",
"]",
",",
"adapterConfig",
":",
"self",
".",
"adapterConfig",
",",
"rendererType",
":",
"self",
".",
"rendererType",
".",
"name",
",",
"sessionId",
":",
"getRpcSessionId",
"(",
"self",
")",
",",
"timeout",
":",
"1000000",
",",
"...",
"self",
".",
"renderProps",
"(",
")",
",",
"}",
")",
";",
"self",
".",
"setReady",
"(",
"true",
")",
";",
"self",
".",
"setCurrBpPerPx",
"(",
"view",
".",
"bpPerPx",
")",
";",
"}",
"else",
"{",
"self",
".",
"setReady",
"(",
"true",
")",
";",
"}",
"}",
"catch",
"(",
"e",
")",
"{",
"console",
".",
"error",
"(",
"e",
")",
";",
"self",
".",
"setError",
"(",
"e",
")",
";",
"}",
"}",
",",
"{",
"delay",
":",
"1000",
"}",
")",
")",
";",
"}",
",",
"selectFeature",
"(",
"feature",
")",
"{",
"const",
"session",
"=",
"getSession",
"(",
"self",
")",
";",
"if",
"(",
"isSessionModelWithWidgets",
"(",
"session",
")",
")",
"{",
"const",
"featureWidget",
"=",
"session",
".",
"addWidget",
"(",
"'AlignmentsFeatureWidget'",
",",
"'alignmentFeature'",
",",
"{",
"featureData",
":",
"feature",
".",
"toJSON",
"(",
")",
",",
"view",
":",
"getContainingView",
"(",
"self",
")",
"}",
")",
";",
"session",
".",
"showWidget",
"(",
"featureWidget",
")",
";",
"}",
"session",
".",
"setSelection",
"(",
"feature",
")",
";",
"}",
",",
"clearSelected",
"(",
")",
"{",
"self",
".",
"sortedBy",
"=",
"undefined",
";",
"}",
",",
"copyFeatureToClipboard",
"(",
"feature",
")",
"{",
"const",
"{",
"uniqueId",
",",
"...",
"rest",
"}",
"=",
"feature",
".",
"toJSON",
"(",
")",
";",
"const",
"session",
"=",
"getSession",
"(",
"self",
")",
";",
"copy",
"(",
"JSON",
".",
"stringify",
"(",
"rest",
",",
"null",
",",
"4",
")",
")",
";",
"session",
".",
"notify",
"(",
"'Copied to clipboard'",
",",
"'success'",
")",
";",
"}",
",",
"toggleSoftClipping",
"(",
")",
"{",
"self",
".",
"showSoftClipping",
"=",
"!",
"self",
".",
"showSoftClipping",
";",
"}",
",",
"toggleMismatchAlpha",
"(",
")",
"{",
"self",
".",
"mismatchAlpha",
"=",
"!",
"self",
".",
"mismatchAlpha",
";",
"}",
",",
"setConfig",
"(",
"configuration",
")",
"{",
"self",
".",
"configuration",
"=",
"configuration",
";",
"}",
",",
"setSortedBy",
"(",
"type",
",",
"tag",
"?",
")",
"{",
"const",
"{",
"centerLineInfo",
"}",
"=",
"getContainingView",
"(",
"self",
")",
"as",
"LGV",
";",
"if",
"(",
"!",
"centerLineInfo",
")",
"{",
"return",
";",
"}",
"const",
"{",
"refName",
",",
"assemblyName",
",",
"offset",
"}",
"=",
"centerLineInfo",
";",
"const",
"centerBp",
"=",
"Math",
".",
"round",
"(",
"offset",
")",
"+",
"1",
";",
"const",
"centerRefName",
"=",
"refName",
";",
"if",
"(",
"centerBp",
"<",
"0",
")",
"{",
"return",
";",
"}",
"self",
".",
"sortedBy",
"=",
"{",
"type",
",",
"pos",
":",
"centerBp",
",",
"refName",
":",
"centerRefName",
",",
"assemblyName",
",",
"tag",
",",
"}",
";",
"self",
".",
"ready",
"=",
"false",
";",
"}",
",",
"setFilterBy",
"(",
"filter",
")",
"{",
"self",
".",
"filterBy",
"=",
"cast",
"(",
"filter",
")",
";",
"}",
",",
"}",
")",
")",
".",
"actions",
"(",
"self",
"=>",
"{",
"const",
"superReload",
"=",
"self",
".",
"reload",
";",
"return",
"{",
"reload",
"(",
")",
"{",
"self",
".",
"clearSelected",
"(",
")",
";",
"superReload",
"(",
")",
";",
"}",
",",
"}",
";",
"}",
")",
".",
"views",
"(",
"self",
"=>",
"(",
"{",
"get",
"maxHeight",
"(",
")",
"{",
"const",
"conf",
"=",
"getConf",
"(",
"self",
",",
"[",
"'renderers'",
",",
"self",
".",
"rendererTypeName",
"]",
")",
"||",
"{",
"}",
";",
"return",
"self",
".",
"trackMaxHeight",
"!==",
"undefined",
"?",
"self",
".",
"trackMaxHeight",
":",
"conf",
".",
"maxHeight",
";",
"}",
",",
"get",
"rendererConfig",
"(",
")",
"{",
"const",
"configBlob",
"=",
"getConf",
"(",
"self",
",",
"[",
"'renderers'",
",",
"self",
".",
"rendererTypeName",
"]",
")",
"||",
"{",
"}",
";",
"return",
"self",
".",
"rendererType",
".",
"configSchema",
".",
"create",
"(",
"{",
"...",
"configBlob",
",",
"height",
":",
"self",
".",
"featureHeight",
",",
"noSpacing",
":",
"self",
".",
"noSpacing",
",",
"maxHeight",
":",
"this",
".",
"maxHeight",
",",
"mismatchAlpha",
":",
"self",
".",
"mismatchAlpha",
",",
"}",
",",
"getEnv",
"(",
"self",
")",
")",
";",
"}",
",",
"get",
"featureHeightSetting",
"(",
")",
"{",
"return",
"(",
"self",
".",
"featureHeight",
"||",
"readConfObject",
"(",
"this",
".",
"rendererConfig",
",",
"'height'",
")",
")",
";",
"}",
",",
"get",
"mismatchAlphaSetting",
"(",
")",
"{",
"return",
"self",
".",
"mismatchAlpha",
"!==",
"undefined",
"?",
"self",
".",
"mismatchAlpha",
":",
"readConfObject",
"(",
"this",
".",
"rendererConfig",
",",
"'mismatchAlpha'",
")",
";",
"}",
",",
"}",
")",
")",
".",
"views",
"(",
"self",
"=>",
"{",
"const",
"{",
"trackMenuItems",
":",
"superTrackMenuItems",
",",
"renderProps",
":",
"superRenderProps",
",",
"}",
"=",
"self",
";",
"return",
"{",
"get",
"rendererTypeName",
"(",
")",
"{",
"const",
"viewName",
"=",
"getConf",
"(",
"self",
",",
"'defaultRendering'",
")",
";",
"const",
"rendererType",
"=",
"rendererTypes",
".",
"get",
"(",
"viewName",
")",
";",
"if",
"(",
"!",
"rendererType",
")",
"{",
"throw",
"new",
"Error",
"(",
"`unknown alignments view name ${",
"viewName",
"}`",
")",
";",
"}",
"return",
"rendererType",
";",
"}",
",",
"contextMenuItems",
"(",
")",
"{",
"const",
"feat",
"=",
"self",
".",
"contextMenuFeature",
";",
"const",
"contextMenuItems",
"=",
"feat",
"?",
"[",
"{",
"label",
":",
"'Open feature details'",
",",
"icon",
":",
"MenuOpenIcon",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"clearFeatureSelection",
"(",
")",
";",
"if",
"(",
"feat",
")",
"{",
"self",
".",
"selectFeature",
"(",
"feat",
")",
";",
"}",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Copy info to clipboard'",
",",
"icon",
":",
"ContentCopyIcon",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"if",
"(",
"feat",
")",
"{",
"self",
".",
"copyFeatureToClipboard",
"(",
"feat",
")",
";",
"}",
"}",
",",
"}",
",",
"]",
":",
"[",
"]",
";",
"return",
"contextMenuItems",
";",
"}",
",",
"get",
"DisplayBlurb",
"(",
")",
"{",
"return",
"LinearPileupDisplayBlurb",
";",
"}",
",",
"get",
"filters",
"(",
")",
"{",
"let",
"filters",
"=",
"[",
"]",
";",
"const",
"{",
"flagInclude",
",",
"flagExclude",
",",
"tagFilter",
",",
"readName",
"}",
"=",
"self",
".",
"filterBy",
";",
"filters",
"=",
"[",
"`jexl:((get(feature,'flags')&${",
"flagInclude",
"})==${",
"flagInclude",
"}) && !(get(feature,'flags')&${",
"flagExclude",
"})`",
",",
"]",
";",
"if",
"(",
"tagFilter",
")",
"{",
"const",
"{",
"tag",
",",
"value",
"}",
"=",
"tagFilter",
";",
"filters",
".",
"push",
"(",
"`jexl:\"${",
"value",
"}\" =='*' ? getTag(feature,\"${",
"tag",
"}\") != undefined : getTag(feature,\"${",
"tag",
"}\") == \"${",
"value",
"}\"`",
")",
";",
"}",
"if",
"(",
"readName",
")",
"{",
"filters",
".",
"push",
"(",
"`jexl:get(feature,'name') == \"${",
"readName",
"}\"`",
")",
";",
"}",
"return",
"new",
"SerializableFilterChain",
"(",
"{",
"filters",
"}",
")",
";",
"}",
",",
"renderProps",
"(",
")",
"{",
"const",
"view",
"=",
"getContainingView",
"(",
"self",
")",
"as",
"LGV",
";",
"const",
"{",
"ready",
",",
"colorTagMap",
",",
"modificationTagMap",
",",
"sortedBy",
",",
"colorBy",
",",
"rpcDriverName",
",",
"}",
"=",
"self",
";",
"return",
"{",
"...",
"superRenderProps",
"(",
")",
",",
"notReady",
":",
"!",
"ready",
"||",
"(",
"sortedBy",
"&&",
"self",
".",
"currBpPerPx",
"!==",
"view",
".",
"bpPerPx",
")",
",",
"rpcDriverName",
",",
"displayModel",
":",
"self",
",",
"sortedBy",
",",
"colorBy",
",",
"colorTagMap",
":",
"JSON",
".",
"parse",
"(",
"JSON",
".",
"stringify",
"(",
"colorTagMap",
")",
")",
",",
"modificationTagMap",
":",
"JSON",
".",
"parse",
"(",
"JSON",
".",
"stringify",
"(",
"modificationTagMap",
")",
")",
",",
"filters",
":",
"this",
".",
"filters",
",",
"showSoftClip",
":",
"self",
".",
"showSoftClipping",
",",
"config",
":",
"self",
".",
"rendererConfig",
",",
"}",
";",
"}",
",",
"trackMenuItems",
"(",
")",
"{",
"return",
"[",
"...",
"superTrackMenuItems",
"(",
")",
",",
"{",
"label",
":",
"'Show soft clipping'",
",",
"icon",
":",
"VisibilityIcon",
",",
"type",
":",
"'checkbox'",
",",
"checked",
":",
"self",
".",
"showSoftClipping",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"toggleSoftClipping",
"(",
")",
";",
"if",
"(",
"self",
".",
"showSoftClipping",
")",
"{",
"self",
".",
"clearSelected",
"(",
")",
";",
"}",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Sort by'",
",",
"icon",
":",
"SortIcon",
",",
"disabled",
":",
"self",
".",
"showSoftClipping",
",",
"subMenu",
":",
"[",
"...",
"[",
"'Start location'",
",",
"'Read strand'",
",",
"'Base pair'",
"]",
".",
"map",
"(",
"option",
"=>",
"{",
"return",
"{",
"label",
":",
"option",
",",
"onClick",
":",
"(",
")",
"=>",
"self",
".",
"setSortedBy",
"(",
"option",
")",
",",
"}",
";",
"}",
")",
",",
"{",
"label",
":",
"'Sort by tag...'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"getSession",
"(",
"self",
")",
".",
"queueDialog",
"(",
"(",
"doneCallback",
")",
"=>",
"[",
"SortByTagDlg",
",",
"{",
"model",
":",
"self",
",",
"handleClose",
":",
"doneCallback",
"}",
",",
"]",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Clear sort'",
",",
"onClick",
":",
"(",
")",
"=>",
"self",
".",
"clearSelected",
"(",
")",
",",
"}",
",",
"]",
",",
"}",
",",
"{",
"label",
":",
"'Color scheme'",
",",
"icon",
":",
"PaletteIcon",
",",
"subMenu",
":",
"[",
"{",
"label",
":",
"'Normal'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'normal'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Mapping quality'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'mappingQuality'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Strand'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'strand'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Pair orientation'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'pairOrientation'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Per-base quality'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'perBaseQuality'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Modifications or methylation'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"getSession",
"(",
"self",
")",
".",
"queueDialog",
"(",
"(",
"doneCallback",
")",
"=>",
"[",
"ModificationsDlg",
",",
"{",
"model",
":",
"self",
",",
"handleClose",
":",
"doneCallback",
"}",
",",
"]",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Insert size'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'insertSize'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Stranded paired-end'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"setColorScheme",
"(",
"{",
"type",
":",
"'reverseTemplate'",
"}",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Color by tag...'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"getSession",
"(",
"self",
")",
".",
"queueDialog",
"(",
"(",
"doneCallback",
")",
"=>",
"[",
"ColorByTagDlg",
",",
"{",
"model",
":",
"self",
",",
"handleClose",
":",
"doneCallback",
"}",
",",
"]",
")",
";",
"}",
",",
"}",
",",
"]",
",",
"}",
",",
"{",
"label",
":",
"'Filter by'",
",",
"icon",
":",
"FilterListIcon",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"getSession",
"(",
"self",
")",
".",
"queueDialog",
"(",
"(",
"doneCallback",
")",
"=>",
"[",
"FilterByTagDlg",
",",
"{",
"model",
":",
"self",
",",
"handleClose",
":",
"doneCallback",
"}",
",",
"]",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Set feature height'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"getSession",
"(",
"self",
")",
".",
"queueDialog",
"(",
"(",
"doneCallback",
")",
"=>",
"[",
"SetFeatureHeightDlg",
",",
"{",
"model",
":",
"self",
",",
"handleClose",
":",
"doneCallback",
"}",
",",
"]",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Set max height'",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"getSession",
"(",
"self",
")",
".",
"queueDialog",
"(",
"(",
"doneCallback",
")",
"=>",
"[",
"SetMaxHeightDlg",
",",
"{",
"model",
":",
"self",
",",
"handleClose",
":",
"doneCallback",
"}",
",",
"]",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Fade mismatches by quality'",
",",
"type",
":",
"'checkbox'",
",",
"checked",
":",
"self",
".",
"mismatchAlphaSetting",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"toggleMismatchAlpha",
"(",
")",
";",
"}",
",",
"}",
",",
"]",
";",
"}",
",",
"}",
";",
"}",
")",
";",
"export",
"type",
"LinearPileupDisplayStateModel",
"=",
"ReturnType",
"<",
"typeof",
"stateModelFactory",
">",
";",
"export",
"type",
"LinearPileupDisplayModel",
"=",
"Instance",
"<",
"LinearPileupDisplayStateModel",
">",
";",
"export",
"default",
"stateModelFactory",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
643,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
643,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
643,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
643,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
643,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
643,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
19,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
731,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
5,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
5,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
536,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
536,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
9615,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
33,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660125 | [
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"export",
"default",
"(",
"pluginManager",
")",
"=>",
"{",
"const",
"{",
"types",
"}",
"=",
"pluginManager",
".",
"lib",
"[",
"'mobx-state-tree'",
"]",
";",
"return",
"types",
".",
"late",
"(",
"(",
")",
"=>",
"ConfigurationSchema",
"(",
"'CramAdapter'",
",",
"{",
"cramLocation",
":",
"{",
"type",
":",
"'fileLocation'",
",",
"defaultValue",
":",
"{",
"uri",
":",
"'/path/to/my.cram'",
",",
"locationType",
":",
"'UriLocation'",
",",
"}",
",",
"}",
",",
"craiLocation",
":",
"{",
"type",
":",
"'fileLocation'",
",",
"defaultValue",
":",
"{",
"uri",
":",
"'/path/to/my.cram.crai'",
",",
"locationType",
":",
"'UriLocation'",
",",
"}",
",",
"}",
",",
"sequenceAdapter",
":",
"pluginManager",
".",
"pluggableConfigSchemaType",
"(",
"'adapter'",
")",
",",
"}",
",",
"{",
"explicitlyTyped",
":",
"true",
"}",
")",
")",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660126 | [
"import",
"{",
"Feature",
",",
"SimpleFeatureSerialized",
",",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"CramAdapter",
"from",
"'./CramAdapter'",
";",
"export",
"interface",
"Mismatch",
"{",
"qual",
"?",
":",
"number",
";",
"start",
":",
"number",
";",
"length",
":",
"number",
";",
"type",
":",
"string",
";",
"base",
":",
"string",
";",
"altbase",
"?",
":",
"string",
";",
"seq",
"?",
":",
"string",
";",
"cliplen",
"?",
":",
"number",
";",
"}",
"export",
"default",
"class",
"CramSlightlyLazyFeature",
"implements",
"Feature",
"{",
"private",
"_store",
":",
"CramAdapter",
";",
"constructor",
"(",
"private",
"record",
",",
"store",
")",
"{",
"this",
".",
"_store",
"=",
"store",
";",
"}",
"_get_name",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"readName",
";",
"}",
"_get_start",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"alignmentStart",
"-",
"1",
";",
"}",
"_get_end",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"alignmentStart",
"+",
"this",
".",
"record",
".",
"lengthOnRef",
"-",
"1",
";",
"}",
"_get_cram_read_features",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"readFeatures",
";",
"}",
"_get_type",
"(",
")",
"{",
"return",
"'match'",
";",
"}",
"_get_score",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"mappingQuality",
";",
"}",
"_get_flags",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"flags",
";",
"}",
"_get_strand",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"isReverseComplemented",
"(",
")",
"?",
"-",
"1",
":",
"1",
";",
"}",
"_read_group_id",
"(",
")",
"{",
"const",
"rg",
"=",
"this",
".",
"_store",
".",
"samHeader",
".",
"readGroups",
";",
"return",
"rg",
"?",
"rg",
"[",
"this",
".",
"record",
".",
"readGroupId",
"]",
":",
"undefined",
";",
"}",
"_get_qual",
"(",
")",
"{",
"return",
"(",
"this",
".",
"record",
".",
"qualityScores",
"||",
"[",
"]",
")",
".",
"join",
"(",
"' '",
")",
";",
"}",
"qualRaw",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"qualityScores",
";",
"}",
"_get_seq_id",
"(",
")",
"{",
"return",
"this",
".",
"_store",
".",
"refIdToName",
"(",
"this",
".",
"record",
".",
"sequenceId",
")",
";",
"}",
"_get_refName",
"(",
")",
"{",
"return",
"this",
".",
"_get_seq_id",
"(",
")",
";",
"}",
"_get_is_paired",
"(",
")",
"{",
"return",
"!",
"!",
"this",
".",
"record",
".",
"mate",
";",
"}",
"_get_pair_orientation",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"isPaired",
"(",
")",
"?",
"this",
".",
"record",
".",
"getPairOrientation",
"(",
")",
":",
"undefined",
";",
"}",
"_get_template_length",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"templateLength",
"||",
"this",
".",
"record",
".",
"templateSize",
";",
"}",
"_get_next_seq_id",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"mate",
"?",
"this",
".",
"_store",
".",
"refIdToName",
"(",
"this",
".",
"record",
".",
"mate",
".",
"sequenceId",
")",
":",
"undefined",
";",
"}",
"_get_next_pos",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"mate",
"?",
"this",
".",
"record",
".",
"mate",
".",
"alignmentStart",
":",
"undefined",
";",
"}",
"_get_next_segment_position",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"mate",
"?",
"`${",
"this",
".",
"_store",
".",
"refIdToName",
"(",
"this",
".",
"record",
".",
"mate",
".",
"sequenceId",
")",
"}:${",
"this",
".",
"record",
".",
"mate",
".",
"alignmentStart",
"}`",
":",
"undefined",
";",
"}",
"_get_tags",
"(",
")",
"{",
"const",
"RG",
"=",
"this",
".",
"_read_group_id",
"(",
")",
";",
"const",
"{",
"tags",
"}",
"=",
"this",
".",
"record",
";",
"return",
"RG",
"!==",
"undefined",
"?",
"{",
"...",
"tags",
",",
"RG",
"}",
":",
"tags",
";",
"}",
"_get_seq",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"getReadBases",
"(",
")",
";",
"}",
"_get_CIGAR",
"(",
")",
"{",
"let",
"seq",
"=",
"''",
";",
"let",
"cigar",
"=",
"''",
";",
"let",
"op",
"=",
"'M'",
";",
"let",
"oplen",
"=",
"0",
";",
"const",
"ref",
"=",
"this",
".",
"record",
".",
"_refRegion",
".",
"seq",
";",
"const",
"refStart",
"=",
"this",
".",
"record",
".",
"_refRegion",
".",
"start",
";",
"let",
"last_pos",
"=",
"this",
".",
"record",
".",
"alignmentStart",
";",
"let",
"sublen",
"=",
"0",
";",
"if",
"(",
"typeof",
"this",
".",
"record",
".",
"readFeatures",
"!==",
"'undefined'",
")",
"{",
"this",
".",
"record",
".",
"readFeatures",
".",
"forEach",
"(",
"(",
"{",
"code",
",",
"refPos",
",",
"sub",
",",
"data",
"}",
")",
"=>",
"{",
"sublen",
"=",
"refPos",
"-",
"last_pos",
";",
"seq",
"+=",
"ref",
".",
"substring",
"(",
"last_pos",
"-",
"refStart",
",",
"refPos",
"-",
"refStart",
")",
";",
"last_pos",
"=",
"refPos",
";",
"if",
"(",
"oplen",
"&&",
"op",
"!==",
"'M'",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"oplen",
"=",
"0",
";",
"}",
"if",
"(",
"sublen",
")",
"{",
"op",
"=",
"'M'",
";",
"oplen",
"+=",
"sublen",
";",
"}",
"if",
"(",
"code",
"===",
"'b'",
")",
"{",
"const",
"ret",
"=",
"data",
".",
"split",
"(",
"','",
")",
";",
"const",
"added",
"=",
"String",
".",
"fromCharCode",
"(",
"...",
"ret",
")",
";",
"seq",
"+=",
"added",
";",
"last_pos",
"+=",
"added",
".",
"length",
";",
"oplen",
"+=",
"added",
".",
"length",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'B'",
")",
"{",
"seq",
"+=",
"sub",
";",
"last_pos",
"++",
";",
"oplen",
"++",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'X'",
")",
"{",
"seq",
"+=",
"sub",
";",
"last_pos",
"++",
";",
"oplen",
"++",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'D'",
"||",
"code",
"===",
"'N'",
")",
"{",
"last_pos",
"+=",
"data",
";",
"if",
"(",
"oplen",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"}",
"cigar",
"+=",
"data",
"+",
"code",
";",
"oplen",
"=",
"0",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'I'",
"||",
"code",
"===",
"'S'",
")",
"{",
"seq",
"+=",
"data",
";",
"if",
"(",
"oplen",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"}",
"cigar",
"+=",
"data",
".",
"length",
"+",
"code",
";",
"oplen",
"=",
"0",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'i'",
")",
"{",
"seq",
"+=",
"data",
";",
"if",
"(",
"oplen",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"}",
"cigar",
"+=",
"`${",
"1",
"}I`",
";",
"oplen",
"=",
"0",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'P'",
")",
"{",
"if",
"(",
"oplen",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"}",
"cigar",
"+=",
"`${",
"data",
"}P`",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'H'",
")",
"{",
"if",
"(",
"oplen",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"}",
"cigar",
"+=",
"`${",
"data",
"}H`",
";",
"oplen",
"=",
"0",
";",
"}",
"}",
")",
";",
"}",
"else",
"{",
"sublen",
"=",
"this",
".",
"record",
".",
"readLength",
"-",
"seq",
".",
"length",
";",
"}",
"if",
"(",
"seq",
".",
"length",
"!==",
"this",
".",
"record",
".",
"readLength",
")",
"{",
"sublen",
"=",
"this",
".",
"record",
".",
"readLength",
"-",
"seq",
".",
"length",
";",
"seq",
"+=",
"ref",
".",
"substring",
"(",
"last_pos",
"-",
"refStart",
",",
"last_pos",
"-",
"refStart",
"+",
"sublen",
")",
";",
"if",
"(",
"oplen",
"&&",
"op",
"!==",
"'M'",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"oplen",
"=",
"0",
";",
"}",
"op",
"=",
"'M'",
";",
"oplen",
"+=",
"sublen",
";",
"}",
"if",
"(",
"oplen",
")",
"{",
"cigar",
"+=",
"oplen",
"+",
"op",
";",
"}",
"return",
"cigar",
";",
"}",
"tags",
"(",
")",
"{",
"const",
"properties",
"=",
"Object",
".",
"getOwnPropertyNames",
"(",
"CramSlightlyLazyFeature",
".",
"prototype",
")",
";",
"return",
"properties",
".",
"filter",
"(",
"prop",
"=>",
"prop",
".",
"startsWith",
"(",
"'_get_'",
")",
"&&",
"prop",
"!==",
"'_get_mismatches'",
"&&",
"prop",
"!==",
"'_get_skips_and_dels'",
"&&",
"prop",
"!==",
"'_get_cram_read_features'",
")",
".",
"map",
"(",
"methodName",
"=>",
"methodName",
".",
"replace",
"(",
"'_get_'",
",",
"''",
")",
")",
";",
"}",
"id",
"(",
")",
"{",
"return",
"`${",
"this",
".",
"_store",
".",
"id",
"}-${",
"this",
".",
"record",
".",
"uniqueId",
"}`",
";",
"}",
"get",
"(",
"field",
")",
"{",
"const",
"methodName",
"=",
"`_get_${",
"field",
"}`",
";",
"if",
"(",
"this",
"[",
"methodName",
"]",
")",
"{",
"return",
"this",
"[",
"methodName",
"]",
"(",
")",
";",
"}",
"return",
"undefined",
";",
"}",
"parent",
"(",
")",
"{",
"return",
"undefined",
";",
"}",
"children",
"(",
")",
"{",
"return",
"undefined",
";",
"}",
"set",
"(",
")",
"{",
"}",
"pairedFeature",
"(",
")",
"{",
"return",
"false",
";",
"}",
"_get_clipPos",
"(",
")",
"{",
"const",
"mismatches",
"=",
"this",
".",
"get",
"(",
"'mismatches'",
")",
";",
"if",
"(",
"mismatches",
".",
"length",
")",
"{",
"const",
"record",
"=",
"this",
".",
"get",
"(",
"'strand'",
")",
"===",
"-",
"1",
"?",
"mismatches",
"[",
"mismatches",
".",
"length",
"-",
"1",
"]",
":",
"mismatches",
"[",
"0",
"]",
";",
"const",
"{",
"type",
",",
"cliplen",
"}",
"=",
"record",
";",
"if",
"(",
"type",
"===",
"'softclip'",
"||",
"type",
"===",
"'hardclip'",
")",
"{",
"return",
"cliplen",
";",
"}",
"}",
"return",
"0",
";",
"}",
"toJSON",
"(",
")",
"{",
"const",
"tags",
"=",
"{",
"}",
";",
"this",
".",
"tags",
"(",
")",
".",
"forEach",
"(",
"(",
"t",
")",
"=>",
"{",
"const",
"val",
"=",
"this",
".",
"get",
"(",
"t",
")",
";",
"if",
"(",
"val",
"!==",
"undefined",
")",
"{",
"tags",
"[",
"t",
"]",
"=",
"val",
";",
"}",
"}",
")",
";",
"return",
"{",
"...",
"tags",
",",
"name",
":",
"this",
".",
"get",
"(",
"'name'",
")",
",",
"type",
":",
"this",
".",
"get",
"(",
"'type'",
")",
",",
"uniqueId",
":",
"this",
".",
"id",
"(",
")",
",",
"}",
";",
"}",
"_get_mismatches",
"(",
")",
"{",
"const",
"readFeatures",
"=",
"this",
".",
"get",
"(",
"'cram_read_features'",
")",
";",
"const",
"qual",
"=",
"this",
".",
"qualRaw",
"(",
")",
";",
"if",
"(",
"!",
"readFeatures",
")",
"{",
"return",
"[",
"]",
";",
"}",
"const",
"start",
"=",
"this",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"mismatches",
"=",
"[",
"]",
";",
"readFeatures",
".",
"forEach",
"(",
"(",
"args",
")",
"=>",
"{",
"const",
"{",
"code",
",",
"pos",
",",
"data",
",",
"sub",
",",
"ref",
"}",
"=",
"args",
";",
"const",
"refPos",
"=",
"args",
".",
"refPos",
"-",
"1",
"-",
"start",
";",
"if",
"(",
"code",
"===",
"'X'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"refPos",
",",
"length",
":",
"1",
",",
"base",
":",
"sub",
",",
"qual",
":",
"qual",
"?.",
"[",
"pos",
"]",
",",
"altbase",
":",
"ref",
",",
"type",
":",
"'mismatch'",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'I'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"refPos",
",",
"type",
":",
"'insertion'",
",",
"base",
":",
"`${",
"data",
".",
"length",
"}`",
",",
"length",
":",
"0",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'N'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"type",
":",
"'skip'",
",",
"length",
":",
"data",
",",
"start",
":",
"refPos",
",",
"base",
":",
"'N'",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'S'",
")",
"{",
"const",
"len",
"=",
"data",
".",
"length",
";",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"refPos",
",",
"type",
":",
"'softclip'",
",",
"base",
":",
"`S${",
"len",
"}`",
",",
"cliplen",
":",
"len",
",",
"length",
":",
"1",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'P'",
")",
"{",
"}",
"else",
"if",
"(",
"code",
"===",
"'H'",
")",
"{",
"const",
"len",
"=",
"data",
";",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"refPos",
",",
"type",
":",
"'hardclip'",
",",
"base",
":",
"`H${",
"len",
"}`",
",",
"cliplen",
":",
"len",
",",
"length",
":",
"1",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'D'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"type",
":",
"'deletion'",
",",
"length",
":",
"data",
",",
"start",
":",
"refPos",
",",
"base",
":",
"'*'",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'b'",
")",
"{",
"}",
"else",
"if",
"(",
"code",
"===",
"'q'",
")",
"{",
"}",
"else",
"if",
"(",
"code",
"===",
"'B'",
")",
"{",
"}",
"else",
"if",
"(",
"code",
"===",
"'i'",
")",
"{",
"mismatches",
".",
"push",
"(",
"{",
"start",
":",
"refPos",
",",
"type",
":",
"'insertion'",
",",
"base",
":",
"data",
",",
"length",
":",
"1",
",",
"}",
")",
";",
"}",
"else",
"if",
"(",
"code",
"===",
"'Q'",
")",
"{",
"}",
"}",
")",
";",
"return",
"mismatches",
";",
"}",
"_get_skips_and_dels",
"(",
")",
"{",
"return",
"this",
".",
"_get_mismatches",
"(",
")",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
17,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660127 | [
"import",
"{",
"CraiIndex",
",",
"IndexedCramFile",
"}",
"from",
"'@gmod/cram'",
";",
"import",
"{",
"BaseFeatureDataAdapter",
",",
"BaseOptions",
",",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"import",
"{",
"Region",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"{",
"checkAbortSignal",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"openLocation",
"}",
"from",
"'@jbrowse/core/util/io'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"ObservableCreate",
"}",
"from",
"'@jbrowse/core/util/rxjs'",
";",
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"CramSlightlyLazyFeature",
"from",
"'./CramSlightlyLazyFeature'",
";",
"interface",
"HeaderLine",
"{",
"tag",
":",
"string",
";",
"value",
":",
"any",
";",
"data",
":",
"HeaderLine",
"[",
"]",
";",
"}",
"interface",
"Header",
"{",
"idToName",
"?",
":",
"string",
"[",
"]",
";",
"nameToId",
"?",
":",
"Record",
"<",
"string",
",",
"number",
">",
";",
"readGroups",
"?",
":",
"number",
"[",
"]",
";",
"}",
"export",
"default",
"class",
"CramAdapter",
"extends",
"BaseFeatureDataAdapter",
"{",
"private",
"cram",
":",
"any",
";",
"private",
"setupP",
"?",
":",
"Promise",
"<",
"Header",
">",
";",
"private",
"sequenceAdapter",
"?",
":",
"BaseFeatureDataAdapter",
";",
"public",
"samHeader",
":",
"Header",
"=",
"{",
"}",
";",
"private",
"seqIdToRefName",
":",
"string",
"[",
"]",
"|",
"undefined",
";",
"private",
"seqIdToOriginalRefName",
":",
"string",
"[",
"]",
"=",
"[",
"]",
";",
"public",
"async",
"configure",
"(",
")",
"{",
"const",
"cramLocation",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'cramLocation'",
")",
";",
"const",
"craiLocation",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'craiLocation'",
")",
";",
"if",
"(",
"!",
"cramLocation",
")",
"{",
"throw",
"new",
"Error",
"(",
"'missing cramLocation argument'",
")",
";",
"}",
"if",
"(",
"!",
"craiLocation",
")",
"{",
"throw",
"new",
"Error",
"(",
"'missing craiLocation argument'",
")",
";",
"}",
"this",
".",
"cram",
"=",
"new",
"IndexedCramFile",
"(",
"{",
"cramFilehandle",
":",
"openLocation",
"(",
"cramLocation",
",",
"this",
".",
"pluginManager",
")",
",",
"index",
":",
"new",
"CraiIndex",
"(",
"{",
"filehandle",
":",
"openLocation",
"(",
"craiLocation",
",",
"this",
".",
"pluginManager",
")",
",",
"}",
")",
",",
"seqFetch",
":",
"this",
".",
"seqFetch",
".",
"bind",
"(",
"this",
")",
",",
"checkSequenceMD5",
":",
"false",
",",
"fetchSizeLimit",
":",
"this",
".",
"config",
".",
"fetchSizeLimit",
"||",
"600000000",
",",
"}",
")",
";",
"const",
"sequenceAdapterType",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"[",
"'sequenceAdapter'",
",",
"'type'",
",",
"]",
")",
";",
"if",
"(",
"!",
"this",
".",
"getSubAdapter",
")",
"{",
"throw",
"new",
"Error",
"(",
"'Error getting subadapter'",
")",
";",
"}",
"const",
"{",
"dataAdapter",
"}",
"=",
"await",
"this",
".",
"getSubAdapter",
"(",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'sequenceAdapter'",
")",
")",
";",
"if",
"(",
"dataAdapter",
"instanceof",
"BaseFeatureDataAdapter",
")",
"{",
"this",
".",
"sequenceAdapter",
"=",
"dataAdapter",
";",
"}",
"else",
"{",
"throw",
"new",
"Error",
"(",
"`CRAM feature adapters cannot use sequence adapters of type '${",
"sequenceAdapterType",
"}'`",
")",
";",
"}",
"return",
"{",
"sequenceAdapter",
":",
"this",
".",
"sequenceAdapter",
"}",
";",
"}",
"async",
"getHeader",
"(",
"opts",
"?",
")",
"{",
"await",
"this",
".",
"configure",
"(",
")",
";",
"return",
"this",
".",
"cram",
".",
"cram",
".",
"getHeaderText",
"(",
"opts",
")",
";",
"}",
"private",
"async",
"seqFetch",
"(",
"seqId",
",",
"start",
",",
"end",
")",
"{",
"start",
"-=",
"1",
";",
"const",
"refSeqStore",
"=",
"this",
".",
"sequenceAdapter",
";",
"if",
"(",
"!",
"refSeqStore",
")",
"{",
"return",
"undefined",
";",
"}",
"const",
"refName",
"=",
"this",
".",
"refIdToOriginalName",
"(",
"seqId",
")",
"||",
"this",
".",
"refIdToName",
"(",
"seqId",
")",
";",
"if",
"(",
"!",
"refName",
")",
"{",
"return",
"undefined",
";",
"}",
"const",
"features",
"=",
"refSeqStore",
".",
"getFeatures",
"(",
"{",
"refName",
",",
"start",
",",
"end",
",",
"assemblyName",
":",
"''",
",",
"}",
",",
"{",
"}",
")",
";",
"const",
"seqChunks",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"trimmed",
"=",
"[",
"]",
";",
"seqChunks",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"get",
"(",
"'start'",
")",
"-",
"b",
".",
"get",
"(",
"'start'",
")",
")",
".",
"forEach",
"(",
"(",
"chunk",
")",
"=>",
"{",
"const",
"chunkStart",
"=",
"chunk",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"chunkEnd",
"=",
"chunk",
".",
"get",
"(",
"'end'",
")",
";",
"const",
"trimStart",
"=",
"Math",
".",
"max",
"(",
"start",
"-",
"chunkStart",
",",
"0",
")",
";",
"const",
"trimEnd",
"=",
"Math",
".",
"min",
"(",
"end",
"-",
"chunkStart",
",",
"chunkEnd",
"-",
"chunkStart",
")",
";",
"const",
"trimLength",
"=",
"trimEnd",
"-",
"trimStart",
";",
"const",
"chunkSeq",
"=",
"chunk",
".",
"get",
"(",
"'seq'",
")",
"||",
"chunk",
".",
"get",
"(",
"'residues'",
")",
";",
"trimmed",
".",
"push",
"(",
"chunkSeq",
".",
"substr",
"(",
"trimStart",
",",
"trimLength",
")",
")",
";",
"}",
")",
";",
"const",
"sequence",
"=",
"trimmed",
".",
"join",
"(",
"''",
")",
";",
"if",
"(",
"sequence",
".",
"length",
"!==",
"end",
"-",
"start",
")",
"{",
"throw",
"new",
"Error",
"(",
"`sequence fetch failed: fetching ${",
"refName",
"}:${",
"(",
"start",
"-",
"1",
")",
".",
"toLocaleString",
"(",
")",
"}-${",
"end",
".",
"toLocaleString",
"(",
")",
"} returned ${",
"sequence",
".",
"length",
".",
"toLocaleString",
"(",
")",
"} bases, but should have returned ${",
"(",
"end",
"-",
"start",
")",
".",
"toLocaleString",
"(",
")",
"}`",
")",
";",
"}",
"return",
"sequence",
";",
"}",
"private",
"async",
"setup",
"(",
"opts",
"?",
")",
"{",
"const",
"{",
"statusCallback",
"=",
"(",
")",
"=>",
"{",
"}",
"}",
"=",
"opts",
"||",
"{",
"}",
";",
"if",
"(",
"!",
"this",
".",
"setupP",
")",
"{",
"this",
".",
"setupP",
"=",
"this",
".",
"configure",
"(",
")",
".",
"then",
"(",
"async",
"(",
")",
"=>",
"{",
"statusCallback",
"(",
"'Downloading index'",
")",
";",
"const",
"samHeader",
"=",
"await",
"this",
".",
"cram",
".",
"cram",
".",
"getSamHeader",
"(",
"opts",
"?.",
"signal",
")",
";",
"const",
"idToName",
"=",
"[",
"]",
";",
"const",
"nameToId",
"=",
"{",
"}",
";",
"samHeader",
".",
"filter",
"(",
"l",
"=>",
"l",
".",
"tag",
"===",
"'SQ'",
")",
".",
"forEach",
"(",
"(",
"sqLine",
",",
"refId",
")",
"=>",
"{",
"sqLine",
".",
"data",
".",
"forEach",
"(",
"item",
"=>",
"{",
"if",
"(",
"item",
".",
"tag",
"===",
"'SN'",
")",
"{",
"const",
"refName",
"=",
"item",
".",
"value",
";",
"nameToId",
"[",
"refName",
"]",
"=",
"refId",
";",
"idToName",
"[",
"refId",
"]",
"=",
"refName",
";",
"}",
"}",
")",
";",
"}",
")",
";",
"const",
"readGroups",
"=",
"samHeader",
".",
"filter",
"(",
"l",
"=>",
"l",
".",
"tag",
"===",
"'RG'",
")",
".",
"map",
"(",
"rgLine",
"=>",
"rgLine",
".",
"data",
".",
"find",
"(",
"item",
"=>",
"item",
".",
"tag",
"===",
"'ID'",
")",
"?.",
"value",
")",
";",
"if",
"(",
"idToName",
".",
"length",
")",
"{",
"this",
".",
"samHeader",
"=",
"{",
"idToName",
",",
"nameToId",
",",
"readGroups",
"}",
";",
"}",
"statusCallback",
"(",
"''",
")",
";",
"return",
"this",
".",
"samHeader",
";",
"}",
")",
".",
"catch",
"(",
"e",
"=>",
"{",
"this",
".",
"setupP",
"=",
"undefined",
";",
"throw",
"e",
";",
"}",
")",
";",
"}",
"return",
"this",
".",
"setupP",
";",
"}",
"async",
"getRefNames",
"(",
"opts",
"?",
")",
"{",
"await",
"this",
".",
"setup",
"(",
"opts",
")",
";",
"if",
"(",
"this",
".",
"samHeader",
".",
"idToName",
")",
"{",
"return",
"this",
".",
"samHeader",
".",
"idToName",
";",
"}",
"if",
"(",
"this",
".",
"sequenceAdapter",
")",
"{",
"return",
"this",
".",
"sequenceAdapter",
".",
"getRefNames",
"(",
")",
";",
"}",
"throw",
"new",
"Error",
"(",
"'unable to get refnames'",
")",
";",
"}",
"refNameToId",
"(",
"refName",
")",
"{",
"if",
"(",
"this",
".",
"samHeader",
".",
"nameToId",
")",
"{",
"return",
"this",
".",
"samHeader",
".",
"nameToId",
"[",
"refName",
"]",
";",
"}",
"if",
"(",
"this",
".",
"seqIdToRefName",
")",
"{",
"return",
"this",
".",
"seqIdToRefName",
".",
"indexOf",
"(",
"refName",
")",
";",
"}",
"return",
"undefined",
";",
"}",
"refIdToName",
"(",
"refId",
")",
"{",
"if",
"(",
"this",
".",
"samHeader",
".",
"idToName",
")",
"{",
"return",
"this",
".",
"samHeader",
".",
"idToName",
"[",
"refId",
"]",
";",
"}",
"if",
"(",
"this",
".",
"seqIdToRefName",
")",
"{",
"return",
"this",
".",
"seqIdToRefName",
"[",
"refId",
"]",
";",
"}",
"return",
"undefined",
";",
"}",
"refIdToOriginalName",
"(",
"refId",
")",
"{",
"return",
"this",
".",
"seqIdToOriginalRefName",
"[",
"refId",
"]",
";",
"}",
"getFeatures",
"(",
"region",
",",
"opts",
"?",
")",
"{",
"const",
"{",
"signal",
",",
"statusCallback",
"=",
"(",
")",
"=>",
"{",
"}",
"}",
"=",
"opts",
"||",
"{",
"}",
";",
"const",
"{",
"refName",
",",
"start",
",",
"end",
",",
"originalRefName",
"}",
"=",
"region",
";",
"return",
"ObservableCreate",
"<",
"Feature",
">",
"(",
"async",
"(",
"observer",
")",
"=>",
"{",
"await",
"this",
".",
"setup",
"(",
"opts",
")",
";",
"if",
"(",
"this",
".",
"sequenceAdapter",
"&&",
"!",
"this",
".",
"seqIdToRefName",
")",
"{",
"this",
".",
"seqIdToRefName",
"=",
"await",
"this",
".",
"sequenceAdapter",
".",
"getRefNames",
"(",
"opts",
")",
";",
"}",
"const",
"refId",
"=",
"this",
".",
"refNameToId",
"(",
"refName",
")",
";",
"if",
"(",
"refId",
"!==",
"undefined",
")",
"{",
"if",
"(",
"originalRefName",
")",
"{",
"this",
".",
"seqIdToOriginalRefName",
"[",
"refId",
"]",
"=",
"originalRefName",
";",
"}",
"statusCallback",
"(",
"'Downloading alignments'",
")",
";",
"const",
"records",
"=",
"await",
"this",
".",
"cram",
".",
"getRecordsForRange",
"(",
"refId",
",",
"start",
",",
"end",
",",
"opts",
")",
";",
"checkAbortSignal",
"(",
"signal",
")",
";",
"records",
".",
"forEach",
"(",
"(",
"record",
")",
"=>",
"{",
"observer",
".",
"next",
"(",
"this",
".",
"cramRecordToFeature",
"(",
"record",
")",
")",
";",
"}",
")",
";",
"}",
"statusCallback",
"(",
"''",
")",
";",
"observer",
".",
"complete",
"(",
")",
";",
"}",
",",
"signal",
")",
";",
"}",
"freeResources",
"(",
")",
"{",
"}",
"cramRecordToFeature",
"(",
"record",
")",
"{",
"return",
"new",
"CramSlightlyLazyFeature",
"(",
"record",
",",
"this",
")",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
3,
null,
3,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
536,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
17,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
536,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660128 | [
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"AdapterType",
"from",
"'@jbrowse/core/pluggableElementTypes/AdapterType'",
";",
"import",
"configSchemaF",
"from",
"'./configSchema'",
";",
"export",
"default",
"(",
"pluginManager",
")",
"=>",
"{",
"pluginManager",
".",
"addAdapterType",
"(",
"(",
")",
"=>",
"new",
"AdapterType",
"(",
"{",
"name",
":",
"'CramAdapter'",
",",
"configSchema",
":",
"pluginManager",
".",
"load",
"(",
"configSchemaF",
")",
",",
"getAdapterClass",
":",
"(",
")",
"=>",
"import",
"(",
"'./CramAdapter'",
")",
".",
"then",
"(",
"r",
"=>",
"r",
".",
"default",
")",
",",
"}",
")",
")",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660129 | [
"import",
"{",
"Feature",
",",
"SimpleFeatureSerialized",
",",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"BamRecord",
"}",
"from",
"'@gmod/bam'",
";",
"import",
"{",
"parseCigar",
",",
"generateMD",
",",
"cigarToMismatches",
",",
"mdToMismatches",
",",
"Mismatch",
",",
"}",
"from",
"'./MismatchParser'",
";",
"import",
"BamAdapter",
"from",
"'./BamAdapter'",
";",
"export",
"default",
"class",
"BamSlightlyLazyFeature",
"implements",
"Feature",
"{",
"constructor",
"(",
"private",
"record",
",",
"private",
"adapter",
",",
"private",
"ref",
"?",
")",
"{",
"}",
"_get_name",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"get",
"(",
"'name'",
")",
";",
"}",
"_get_type",
"(",
")",
"{",
"return",
"'match'",
";",
"}",
"_get_score",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"get",
"(",
"'mq'",
")",
";",
"}",
"_get_flags",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"flags",
";",
"}",
"_get_strand",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"isReverseComplemented",
"(",
")",
"?",
"-",
"1",
":",
"1",
";",
"}",
"_get_read_group_id",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"readGroupId",
";",
"}",
"_get_pair_orientation",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"isPaired",
"(",
")",
"?",
"this",
".",
"record",
".",
"getPairOrientation",
"(",
")",
":",
"undefined",
";",
"}",
"_get_next_seq_id",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"_next_refid",
"(",
")",
";",
"}",
"_get_seq_id",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"_refID",
";",
"}",
"_get_next_refName",
"(",
")",
"{",
"return",
"this",
".",
"adapter",
".",
"refIdToName",
"(",
"this",
".",
"record",
".",
"_next_refid",
"(",
")",
")",
";",
"}",
"_get_next_segment_position",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"isPaired",
"(",
")",
"?",
"`${",
"this",
".",
"adapter",
".",
"refIdToName",
"(",
"this",
".",
"record",
".",
"_next_refid",
"(",
")",
")",
"}:${",
"this",
".",
"record",
".",
"_next_pos",
"(",
")",
"+",
"1",
"}`",
":",
"undefined",
";",
"}",
"_get_seq",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"getReadBases",
"(",
")",
";",
"}",
"_get_MD",
"(",
")",
"{",
"const",
"md",
"=",
"this",
".",
"record",
".",
"get",
"(",
"'MD'",
")",
";",
"const",
"seq",
"=",
"this",
".",
"get",
"(",
"'seq'",
")",
";",
"if",
"(",
"!",
"md",
"&&",
"seq",
"&&",
"this",
".",
"ref",
")",
"{",
"return",
"generateMD",
"(",
"this",
".",
"ref",
",",
"this",
".",
"record",
".",
"getReadBases",
"(",
")",
",",
"this",
".",
"get",
"(",
"'CIGAR'",
")",
")",
";",
"}",
"return",
"md",
";",
"}",
"qualRaw",
"(",
")",
"{",
"return",
"this",
".",
"record",
".",
"qualRaw",
"(",
")",
";",
"}",
"set",
"(",
")",
"{",
"}",
"tags",
"(",
")",
"{",
"const",
"properties",
"=",
"Object",
".",
"getOwnPropertyNames",
"(",
"BamSlightlyLazyFeature",
".",
"prototype",
")",
";",
"return",
"[",
"...",
"new",
"Set",
"(",
"properties",
".",
"filter",
"(",
"prop",
"=>",
"prop",
".",
"startsWith",
"(",
"'_get_'",
")",
"&&",
"prop",
"!==",
"'_get_mismatches'",
"&&",
"prop",
"!==",
"'_get_skips_and_dels'",
"&&",
"prop",
"!==",
"'_get_cram_read_features'",
"&&",
"prop",
"!==",
"'_get_tags'",
"&&",
"prop",
"!==",
"'_get_next_seq_id'",
"&&",
"prop",
"!==",
"'_get_seq_id'",
")",
".",
"map",
"(",
"methodName",
"=>",
"methodName",
".",
"replace",
"(",
"'_get_'",
",",
"''",
")",
")",
".",
"concat",
"(",
"this",
".",
"record",
".",
"_tags",
"(",
")",
")",
")",
",",
"]",
";",
"}",
"id",
"(",
")",
"{",
"return",
"`${",
"this",
".",
"adapter",
".",
"id",
"}-${",
"this",
".",
"record",
".",
"id",
"(",
")",
"}`",
";",
"}",
"get",
"(",
"field",
")",
"{",
"const",
"methodName",
"=",
"`_get_${",
"field",
"}`",
";",
"if",
"(",
"this",
"[",
"methodName",
"]",
")",
"{",
"return",
"this",
"[",
"methodName",
"]",
"(",
")",
";",
"}",
"return",
"this",
".",
"record",
".",
"get",
"(",
"field",
")",
";",
"}",
"_get_refName",
"(",
")",
"{",
"return",
"this",
".",
"adapter",
".",
"refIdToName",
"(",
"this",
".",
"record",
".",
"seq_id",
"(",
")",
")",
";",
"}",
"parent",
"(",
")",
"{",
"return",
"undefined",
";",
"}",
"children",
"(",
")",
"{",
"return",
"undefined",
";",
"}",
"pairedFeature",
"(",
")",
"{",
"return",
"false",
";",
"}",
"toJSON",
"(",
")",
"{",
"return",
"{",
"...",
"Object",
".",
"fromEntries",
"(",
"this",
".",
"tags",
"(",
")",
".",
"map",
"(",
"t",
"=>",
"[",
"t",
",",
"this",
".",
"get",
"(",
"t",
")",
"]",
")",
".",
"filter",
"(",
"elt",
"=>",
"elt",
"[",
"1",
"]",
"!==",
"undefined",
")",
")",
",",
"uniqueId",
":",
"this",
".",
"id",
"(",
")",
",",
"}",
";",
"}",
"_get_skips_and_dels",
"(",
"opts",
"=",
"{",
"cigarAttributeName",
":",
"'CIGAR'",
",",
"}",
")",
"{",
"const",
"{",
"cigarAttributeName",
"}",
"=",
"opts",
";",
"let",
"mismatches",
"=",
"[",
"]",
";",
"let",
"cigarOps",
"=",
"[",
"]",
";",
"const",
"cigarString",
"=",
"this",
".",
"get",
"(",
"cigarAttributeName",
")",
";",
"if",
"(",
"cigarString",
")",
"{",
"cigarOps",
"=",
"parseCigar",
"(",
"cigarString",
")",
";",
"mismatches",
"=",
"mismatches",
".",
"concat",
"(",
"cigarToMismatches",
"(",
"cigarOps",
",",
"this",
".",
"get",
"(",
"'seq'",
")",
",",
"this",
".",
"qualRaw",
"(",
")",
")",
")",
";",
"}",
"return",
"mismatches",
";",
"}",
"_get_mismatches",
"(",
"{",
"cigarAttributeName",
"=",
"'CIGAR'",
",",
"mdAttributeName",
"=",
"'MD'",
",",
"}",
"=",
"{",
"}",
")",
"{",
"let",
"mismatches",
"=",
"[",
"]",
";",
"let",
"cigarOps",
"=",
"[",
"]",
";",
"const",
"cigarString",
"=",
"this",
".",
"get",
"(",
"cigarAttributeName",
")",
";",
"const",
"seq",
"=",
"this",
".",
"get",
"(",
"'seq'",
")",
";",
"const",
"qual",
"=",
"this",
".",
"qualRaw",
"(",
")",
";",
"if",
"(",
"cigarString",
")",
"{",
"cigarOps",
"=",
"parseCigar",
"(",
"cigarString",
")",
";",
"mismatches",
"=",
"mismatches",
".",
"concat",
"(",
"cigarToMismatches",
"(",
"cigarOps",
",",
"seq",
",",
"qual",
")",
")",
";",
"}",
"const",
"mdString",
"=",
"this",
".",
"get",
"(",
"mdAttributeName",
")",
";",
"if",
"(",
"mdString",
")",
"{",
"mismatches",
"=",
"mismatches",
".",
"concat",
"(",
"mdToMismatches",
"(",
"mdString",
",",
"cigarOps",
",",
"mismatches",
",",
"seq",
",",
"qual",
")",
")",
";",
"}",
"const",
"seen",
"=",
"{",
"}",
";",
"return",
"mismatches",
".",
"filter",
"(",
"m",
"=>",
"{",
"const",
"key",
"=",
"`${",
"m",
".",
"type",
"},${",
"m",
".",
"start",
"},${",
"m",
".",
"length",
"}`",
";",
"const",
"s",
"=",
"seen",
"[",
"key",
"]",
";",
"seen",
"[",
"key",
"]",
"=",
"true",
";",
"return",
"!",
"s",
";",
"}",
")",
";",
"}",
"_get_clipPos",
"(",
")",
"{",
"const",
"cigar",
"=",
"this",
".",
"get",
"(",
"'CIGAR'",
")",
"||",
"''",
";",
"return",
"this",
".",
"get",
"(",
"'strand'",
")",
"===",
"-",
"1",
"?",
"+",
"(",
"cigar",
".",
"match",
"(",
"/(\\d+)[SH]$/",
")",
"||",
"[",
"]",
")",
"[",
"1",
"]",
"||",
"0",
":",
"+",
"(",
"cigar",
".",
"match",
"(",
"/^(\\d+)([SH])/",
")",
"||",
"[",
"]",
")",
"[",
"1",
"]",
"||",
"0",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
0,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
12,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
5,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
126,
null,
null,
null,
null,
null,
null,
null,
126,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660130 | [
"import",
"{",
"BamFile",
"}",
"from",
"'@gmod/bam'",
";",
"import",
"{",
"BaseFeatureDataAdapter",
",",
"BaseOptions",
",",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"import",
"{",
"Region",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"{",
"checkAbortSignal",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"openLocation",
"}",
"from",
"'@jbrowse/core/util/io'",
";",
"import",
"{",
"ObservableCreate",
"}",
"from",
"'@jbrowse/core/util/rxjs'",
";",
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"BamSlightlyLazyFeature",
"from",
"'./BamSlightlyLazyFeature'",
";",
"interface",
"Header",
"{",
"idToName",
":",
"string",
"[",
"]",
";",
"nameToId",
":",
"Record",
"<",
"string",
",",
"number",
">",
";",
"}",
"export",
"default",
"class",
"BamAdapter",
"extends",
"BaseFeatureDataAdapter",
"{",
"private",
"samHeader",
"?",
":",
"Header",
";",
"private",
"setupP",
"?",
":",
"Promise",
"<",
"Header",
">",
";",
"protected",
"configured",
"?",
":",
"Promise",
"<",
"{",
"bam",
":",
"BamFile",
";",
"sequenceAdapter",
"?",
":",
"BaseFeatureDataAdapter",
";",
"}",
">",
";",
"protected",
"async",
"configure",
"(",
")",
"{",
"if",
"(",
"!",
"this",
".",
"configured",
")",
"{",
"const",
"bamLocation",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'bamLocation'",
")",
";",
"const",
"location",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"[",
"'index'",
",",
"'location'",
"]",
")",
";",
"const",
"indexType",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"[",
"'index'",
",",
"'indexType'",
"]",
")",
";",
"const",
"chunkSizeLimit",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'chunkSizeLimit'",
")",
";",
"const",
"fetchSizeLimit",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'fetchSizeLimit'",
")",
";",
"const",
"bam",
"=",
"new",
"BamFile",
"(",
"{",
"bamFilehandle",
":",
"openLocation",
"(",
"bamLocation",
",",
"this",
".",
"pluginManager",
")",
",",
"csiFilehandle",
":",
"indexType",
"===",
"'CSI'",
"?",
"openLocation",
"(",
"location",
",",
"this",
".",
"pluginManager",
")",
":",
"undefined",
",",
"baiFilehandle",
":",
"indexType",
"!==",
"'CSI'",
"?",
"openLocation",
"(",
"location",
",",
"this",
".",
"pluginManager",
")",
":",
"undefined",
",",
"chunkSizeLimit",
",",
"fetchSizeLimit",
",",
"}",
")",
";",
"const",
"adapterConfig",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'sequenceAdapter'",
")",
";",
"if",
"(",
"adapterConfig",
"&&",
"this",
".",
"getSubAdapter",
")",
"{",
"this",
".",
"configured",
"=",
"this",
".",
"getSubAdapter",
"(",
"adapterConfig",
")",
".",
"then",
"(",
"(",
"{",
"dataAdapter",
"}",
")",
"=>",
"(",
"{",
"bam",
",",
"sequenceAdapter",
":",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
",",
"}",
")",
")",
";",
"}",
"else",
"{",
"this",
".",
"configured",
"=",
"Promise",
".",
"resolve",
"(",
"{",
"bam",
"}",
")",
";",
"}",
"}",
"return",
"this",
".",
"configured",
";",
"}",
"async",
"getHeader",
"(",
"opts",
"?",
")",
"{",
"const",
"{",
"bam",
"}",
"=",
"await",
"this",
".",
"configure",
"(",
")",
";",
"return",
"bam",
".",
"getHeaderText",
"(",
"opts",
")",
";",
"}",
"private",
"async",
"setup",
"(",
"opts",
"?",
")",
"{",
"const",
"{",
"statusCallback",
"=",
"(",
")",
"=>",
"{",
"}",
"}",
"=",
"opts",
"||",
"{",
"}",
";",
"if",
"(",
"!",
"this",
".",
"setupP",
")",
"{",
"this",
".",
"setupP",
"=",
"this",
".",
"configure",
"(",
")",
".",
"then",
"(",
"async",
"(",
"{",
"bam",
"}",
")",
"=>",
"{",
"statusCallback",
"(",
"'Downloading index'",
")",
";",
"const",
"samHeader",
"=",
"await",
"bam",
".",
"getHeader",
"(",
"opts",
")",
";",
"const",
"idToName",
"=",
"[",
"]",
";",
"const",
"nameToId",
"=",
"{",
"}",
";",
"samHeader",
".",
"filter",
"(",
"l",
"=>",
"l",
".",
"tag",
"===",
"'SQ'",
")",
".",
"forEach",
"(",
"(",
"sqLine",
",",
"refId",
")",
"=>",
"{",
"sqLine",
".",
"data",
".",
"forEach",
"(",
"item",
"=>",
"{",
"if",
"(",
"item",
".",
"tag",
"===",
"'SN'",
")",
"{",
"const",
"refName",
"=",
"item",
".",
"value",
";",
"nameToId",
"[",
"refName",
"]",
"=",
"refId",
";",
"idToName",
"[",
"refId",
"]",
"=",
"refName",
";",
"}",
"}",
")",
";",
"}",
")",
";",
"statusCallback",
"(",
"''",
")",
";",
"this",
".",
"samHeader",
"=",
"{",
"idToName",
",",
"nameToId",
"}",
";",
"return",
"this",
".",
"samHeader",
";",
"}",
")",
".",
"catch",
"(",
"e",
"=>",
"{",
"this",
".",
"setupP",
"=",
"undefined",
";",
"throw",
"e",
";",
"}",
")",
";",
"}",
"return",
"this",
".",
"setupP",
";",
"}",
"async",
"getRefNames",
"(",
"opts",
"?",
")",
"{",
"const",
"{",
"idToName",
"}",
"=",
"await",
"this",
".",
"setup",
"(",
"opts",
")",
";",
"return",
"idToName",
";",
"}",
"private",
"async",
"seqFetch",
"(",
"refName",
",",
"start",
",",
"end",
")",
"{",
"const",
"{",
"sequenceAdapter",
"}",
"=",
"await",
"this",
".",
"configure",
"(",
")",
";",
"const",
"refSeqStore",
"=",
"sequenceAdapter",
";",
"if",
"(",
"!",
"refSeqStore",
")",
"{",
"return",
"undefined",
";",
"}",
"if",
"(",
"!",
"refName",
")",
"{",
"return",
"undefined",
";",
"}",
"const",
"features",
"=",
"refSeqStore",
".",
"getFeatures",
"(",
"{",
"refName",
",",
"start",
",",
"end",
",",
"assemblyName",
":",
"''",
",",
"}",
")",
";",
"const",
"seqChunks",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"trimmed",
"=",
"[",
"]",
";",
"seqChunks",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"get",
"(",
"'start'",
")",
"-",
"b",
".",
"get",
"(",
"'start'",
")",
")",
".",
"forEach",
"(",
"chunk",
"=>",
"{",
"const",
"chunkStart",
"=",
"chunk",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"chunkEnd",
"=",
"chunk",
".",
"get",
"(",
"'end'",
")",
";",
"const",
"trimStart",
"=",
"Math",
".",
"max",
"(",
"start",
"-",
"chunkStart",
",",
"0",
")",
";",
"const",
"trimEnd",
"=",
"Math",
".",
"min",
"(",
"end",
"-",
"chunkStart",
",",
"chunkEnd",
"-",
"chunkStart",
")",
";",
"const",
"trimLength",
"=",
"trimEnd",
"-",
"trimStart",
";",
"const",
"chunkSeq",
"=",
"chunk",
".",
"get",
"(",
"'seq'",
")",
"||",
"chunk",
".",
"get",
"(",
"'residues'",
")",
";",
"trimmed",
".",
"push",
"(",
"chunkSeq",
".",
"substr",
"(",
"trimStart",
",",
"trimLength",
")",
")",
";",
"}",
")",
";",
"const",
"sequence",
"=",
"trimmed",
".",
"join",
"(",
"''",
")",
";",
"if",
"(",
"sequence",
".",
"length",
"!==",
"end",
"-",
"start",
")",
"{",
"throw",
"new",
"Error",
"(",
"`sequence fetch failed: fetching ${",
"refName",
"}:${",
"(",
"start",
"-",
"1",
")",
".",
"toLocaleString",
"(",
")",
"}-${",
"end",
".",
"toLocaleString",
"(",
")",
"} returned ${",
"sequence",
".",
"length",
".",
"toLocaleString",
"(",
")",
"} bases, but should have returned ${",
"(",
"end",
"-",
"start",
")",
".",
"toLocaleString",
"(",
")",
"}`",
")",
";",
"}",
"return",
"sequence",
";",
"}",
"getFeatures",
"(",
"region",
",",
"opts",
"?",
")",
"{",
"const",
"{",
"refName",
",",
"start",
",",
"end",
",",
"originalRefName",
"}",
"=",
"region",
";",
"const",
"{",
"signal",
",",
"statusCallback",
"=",
"(",
")",
"=>",
"{",
"}",
"}",
"=",
"opts",
"||",
"{",
"}",
";",
"return",
"ObservableCreate",
"<",
"Feature",
">",
"(",
"async",
"(",
"observer",
")",
"=>",
"{",
"const",
"{",
"bam",
"}",
"=",
"await",
"this",
".",
"configure",
"(",
")",
";",
"await",
"this",
".",
"setup",
"(",
"opts",
")",
";",
"statusCallback",
"(",
"'Downloading alignments'",
")",
";",
"const",
"records",
"=",
"await",
"bam",
".",
"getRecordsForRange",
"(",
"refName",
",",
"start",
",",
"end",
",",
"opts",
")",
";",
"checkAbortSignal",
"(",
"signal",
")",
";",
"for",
"(",
"const",
"record",
"of",
"records",
")",
"{",
"let",
"ref",
";",
"if",
"(",
"!",
"record",
".",
"get",
"(",
"'md'",
")",
")",
"{",
"ref",
"=",
"await",
"this",
".",
"seqFetch",
"(",
"originalRefName",
"||",
"refName",
",",
"record",
".",
"get",
"(",
"'start'",
")",
",",
"record",
".",
"get",
"(",
"'end'",
")",
")",
";",
"}",
"observer",
".",
"next",
"(",
"new",
"BamSlightlyLazyFeature",
"(",
"record",
",",
"this",
",",
"ref",
")",
")",
";",
"}",
"statusCallback",
"(",
"''",
")",
";",
"observer",
".",
"complete",
"(",
")",
";",
"}",
",",
"signal",
")",
";",
"}",
"freeResources",
"(",
")",
"{",
"}",
"refIdToName",
"(",
"refId",
")",
"{",
"return",
"this",
".",
"samHeader",
"?.",
"idToName",
"[",
"refId",
"]",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
17,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
2,
null,
3,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660131 | [
"import",
"{",
"BamFile",
",",
"HtsgetFile",
"}",
"from",
"'@gmod/bam'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"BaseFeatureDataAdapter",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"import",
"BamAdapter",
"from",
"'../BamAdapter/BamAdapter'",
";",
"export",
"default",
"class",
"HtsgetBamAdapter",
"extends",
"BamAdapter",
"{",
"protected",
"async",
"configure",
"(",
")",
"{",
"if",
"(",
"!",
"this",
".",
"configured",
")",
"{",
"const",
"htsgetBase",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'htsgetBase'",
")",
";",
"const",
"htsgetTrackId",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'htsgetTrackId'",
")",
";",
"const",
"bam",
"=",
"new",
"HtsgetFile",
"(",
"{",
"baseUrl",
":",
"htsgetBase",
",",
"trackId",
":",
"htsgetTrackId",
",",
"}",
")",
"as",
"unknown",
"as",
"BamFile",
";",
"const",
"adapterConfig",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'sequenceAdapter'",
")",
";",
"if",
"(",
"adapterConfig",
"&&",
"this",
".",
"getSubAdapter",
")",
"{",
"this",
".",
"configured",
"=",
"this",
".",
"getSubAdapter",
"(",
"adapterConfig",
")",
".",
"then",
"(",
"(",
"{",
"dataAdapter",
"}",
")",
"=>",
"{",
"return",
"{",
"bam",
",",
"sequenceAdapter",
":",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
",",
"}",
";",
"}",
")",
";",
"}",
"this",
".",
"configured",
"=",
"Promise",
".",
"resolve",
"(",
"{",
"bam",
"}",
")",
";",
"}",
"return",
"this",
".",
"configured",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660132 | [
"import",
"configSchema",
"from",
"'./configSchema'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"AdapterType",
"from",
"'@jbrowse/core/pluggableElementTypes/AdapterType'",
";",
"export",
"default",
"(",
"pluginManager",
")",
"=>",
"{",
"pluginManager",
".",
"addAdapterType",
"(",
"(",
")",
"=>",
"new",
"AdapterType",
"(",
"{",
"name",
":",
"'HtsgetBamAdapter'",
",",
"adapterMetadata",
":",
"{",
"category",
":",
"null",
",",
"hiddenFromGUI",
":",
"true",
",",
"displayName",
":",
"null",
",",
"description",
":",
"null",
",",
"}",
",",
"configSchema",
",",
"getAdapterClass",
":",
"(",
")",
"=>",
"import",
"(",
"'./HtsgetBamAdapter'",
")",
".",
"then",
"(",
"r",
"=>",
"r",
".",
"default",
")",
",",
"}",
")",
")",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660133 | [
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"types",
"}",
"from",
"'mobx-state-tree'",
";",
"export",
"default",
"(",
"pluginManager",
")",
"=>",
"types",
".",
"late",
"(",
"(",
")",
"=>",
"ConfigurationSchema",
"(",
"'SNPCoverageAdapter'",
",",
"{",
"subadapter",
":",
"pluginManager",
".",
"pluggableConfigSchemaType",
"(",
"'adapter'",
")",
",",
"}",
",",
"{",
"explicitlyTyped",
":",
"true",
"}",
")",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660134 | [
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"export",
"function",
"getTag",
"(",
"feature",
",",
"tag",
")",
"{",
"const",
"tags",
"=",
"feature",
".",
"get",
"(",
"'tags'",
")",
";",
"return",
"tags",
"?",
"tags",
"[",
"tag",
"]",
":",
"feature",
".",
"get",
"(",
"tag",
")",
";",
"}",
"export",
"function",
"getTagAlt",
"(",
"feature",
",",
"tag",
",",
"alt",
")",
"{",
"return",
"getTag",
"(",
"feature",
",",
"tag",
")",
"||",
"getTag",
"(",
"feature",
",",
"alt",
")",
";",
"}",
"export",
"const",
"orientationTypes",
"=",
"{",
"fr",
":",
"{",
"F1R2",
":",
"'LR'",
",",
"F2R1",
":",
"'LR'",
",",
"F1F2",
":",
"'LL'",
",",
"F2F1",
":",
"'LL'",
",",
"R1R2",
":",
"'RR'",
",",
"R2R1",
":",
"'RR'",
",",
"R1F2",
":",
"'RL'",
",",
"R2F1",
":",
"'RL'",
",",
"}",
"as",
"{",
"[",
"key",
"]",
":",
"string",
";",
"}",
",",
"rf",
":",
"{",
"R1F2",
":",
"'LR'",
",",
"R2F1",
":",
"'LR'",
",",
"R1R2",
":",
"'LL'",
",",
"R2R1",
":",
"'LL'",
",",
"F1F2",
":",
"'RR'",
",",
"F2F1",
":",
"'RR'",
",",
"F1R2",
":",
"'RL'",
",",
"F2R1",
":",
"'RL'",
",",
"}",
"as",
"{",
"[",
"key",
"]",
":",
"string",
";",
"}",
",",
"ff",
":",
"{",
"F2F1",
":",
"'LR'",
",",
"R1R2",
":",
"'LR'",
",",
"F2R1",
":",
"'LL'",
",",
"R1F2",
":",
"'LL'",
",",
"R2F1",
":",
"'RR'",
",",
"F1R2",
":",
"'RR'",
",",
"R2R1",
":",
"'RL'",
",",
"F1F2",
":",
"'RL'",
",",
"}",
"as",
"{",
"[",
"key",
"]",
":",
"string",
";",
"}",
",",
"}",
";",
"export",
"function",
"getColorWGBS",
"(",
"strand",
",",
"base",
")",
"{",
"if",
"(",
"strand",
"===",
"1",
")",
"{",
"if",
"(",
"base",
"===",
"'C'",
")",
"{",
"return",
"'#f00'",
";",
"}",
"if",
"(",
"base",
"===",
"'T'",
")",
"{",
"return",
"'#00f'",
";",
"}",
"}",
"else",
"if",
"(",
"strand",
"===",
"-",
"1",
")",
"{",
"if",
"(",
"base",
"===",
"'G'",
")",
"{",
"return",
"'#f00'",
";",
"}",
"if",
"(",
"base",
"===",
"'A'",
")",
"{",
"return",
"'#00f'",
";",
"}",
"}",
"return",
"'#888'",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
536,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
536,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660135 | [
"import",
"{",
"BaseFeatureDataAdapter",
",",
"BaseOptions",
",",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"import",
"{",
"AugmentedRegion",
"as",
"Region",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"SimpleFeature",
",",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"SerializableFilterChain",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'",
";",
"import",
"{",
"ObservableCreate",
"}",
"from",
"'@jbrowse/core/util/rxjs'",
";",
"import",
"{",
"reduce",
",",
"filter",
",",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"{",
"Observable",
"}",
"from",
"'rxjs'",
";",
"import",
"{",
"getTagAlt",
"}",
"from",
"'../util'",
";",
"import",
"{",
"parseCigar",
",",
"getNextRefPos",
",",
"getModificationPositions",
",",
"Mismatch",
",",
"}",
"from",
"'../BamAdapter/MismatchParser'",
";",
"interface",
"SNPCoverageOptions",
"extends",
"BaseOptions",
"{",
"filters",
"?",
":",
"SerializableFilterChain",
";",
"}",
"function",
"mismatchLen",
"(",
"mismatch",
")",
"{",
"return",
"!",
"isInterbase",
"(",
"mismatch",
".",
"type",
")",
"?",
"mismatch",
".",
"length",
":",
"1",
";",
"}",
"function",
"isInterbase",
"(",
"type",
")",
"{",
"return",
"type",
"===",
"'softclip'",
"||",
"type",
"===",
"'hardclip'",
"||",
"type",
"===",
"'insertion'",
";",
"}",
"function",
"inc",
"(",
"bin",
",",
"strand",
",",
"type",
",",
"field",
")",
"{",
"if",
"(",
"!",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
")",
"{",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
"=",
"{",
"total",
":",
"0",
",",
"strands",
":",
"{",
"'-1'",
":",
"0",
",",
"'0'",
":",
"0",
",",
"'1'",
":",
"0",
"}",
"}",
";",
"}",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
".",
"total",
"++",
";",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
".",
"strands",
"[",
"strand",
"]",
"++",
";",
"}",
"function",
"dec",
"(",
"bin",
",",
"strand",
",",
"type",
",",
"field",
")",
"{",
"if",
"(",
"!",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
")",
"{",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
"=",
"{",
"total",
":",
"0",
",",
"strands",
":",
"{",
"'-1'",
":",
"0",
",",
"'0'",
":",
"0",
",",
"'1'",
":",
"0",
"}",
"}",
";",
"}",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
".",
"total",
"--",
";",
"bin",
"[",
"type",
"]",
"[",
"field",
"]",
".",
"strands",
"[",
"strand",
"]",
"--",
";",
"}",
"export",
"default",
"class",
"SNPCoverageAdapter",
"extends",
"BaseFeatureDataAdapter",
"{",
"protected",
"async",
"configure",
"(",
")",
"{",
"const",
"subadapterConfig",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"'subadapter'",
")",
";",
"const",
"sequenceConf",
"=",
"readConfObject",
"(",
"this",
".",
"config",
",",
"[",
"'subadapter'",
",",
"'sequenceAdapter'",
",",
"]",
")",
";",
"const",
"dataAdapter",
"=",
"await",
"this",
".",
"getSubAdapter",
"?.",
"(",
"subadapterConfig",
")",
";",
"const",
"sequenceAdapter",
"=",
"sequenceConf",
"?",
"await",
"this",
".",
"getSubAdapter",
"?.",
"(",
"sequenceConf",
")",
":",
"undefined",
";",
"if",
"(",
"!",
"dataAdapter",
")",
"{",
"throw",
"new",
"Error",
"(",
"'Failed to get subadapter'",
")",
";",
"}",
"return",
"{",
"subadapter",
":",
"dataAdapter",
".",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
",",
"sequenceAdapter",
":",
"sequenceAdapter",
"?.",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
"|",
"undefined",
",",
"}",
";",
"}",
"getFeatures",
"(",
"region",
",",
"opts",
"=",
"{",
"}",
")",
"{",
"return",
"ObservableCreate",
"<",
"Feature",
">",
"(",
"async",
"(",
"observer",
")",
"=>",
"{",
"const",
"{",
"subadapter",
"}",
"=",
"await",
"this",
".",
"configure",
"(",
")",
";",
"let",
"stream",
"=",
"subadapter",
".",
"getFeatures",
"(",
"region",
",",
"opts",
")",
";",
"if",
"(",
"opts",
".",
"filters",
")",
"{",
"const",
"{",
"filters",
"}",
"=",
"opts",
";",
"stream",
"=",
"stream",
".",
"pipe",
"(",
"filter",
"(",
"f",
"=>",
"filters",
".",
"passes",
"(",
"f",
",",
"opts",
")",
")",
")",
";",
"}",
"const",
"{",
"bins",
",",
"skipmap",
"}",
"=",
"await",
"this",
".",
"generateCoverageBins",
"(",
"stream",
",",
"region",
",",
"opts",
")",
";",
"bins",
".",
"forEach",
"(",
"(",
"bin",
",",
"index",
")",
"=>",
"{",
"if",
"(",
"bin",
".",
"total",
")",
"{",
"observer",
".",
"next",
"(",
"new",
"SimpleFeature",
"(",
"{",
"id",
":",
"`${",
"this",
".",
"id",
"}-${",
"region",
".",
"start",
"}-${",
"index",
"}`",
",",
"data",
":",
"{",
"score",
":",
"bin",
".",
"total",
",",
"snpinfo",
":",
"bin",
",",
"start",
":",
"region",
".",
"start",
"+",
"index",
",",
"end",
":",
"region",
".",
"start",
"+",
"index",
"+",
"1",
",",
"refName",
":",
"region",
".",
"refName",
",",
"}",
",",
"}",
")",
")",
";",
"}",
"}",
")",
";",
"Object",
".",
"entries",
"(",
"skipmap",
")",
".",
"forEach",
"(",
"(",
"[",
"key",
",",
"skip",
"]",
")",
"=>",
"{",
"observer",
".",
"next",
"(",
"new",
"SimpleFeature",
"(",
"{",
"id",
":",
"key",
",",
"data",
":",
"{",
"type",
":",
"'skip'",
",",
"start",
":",
"skip",
".",
"start",
",",
"end",
":",
"skip",
".",
"end",
",",
"strand",
":",
"skip",
".",
"strand",
",",
"score",
":",
"skip",
".",
"score",
",",
"xs",
":",
"skip",
".",
"xs",
",",
"}",
",",
"}",
")",
")",
";",
"}",
")",
";",
"observer",
".",
"complete",
"(",
")",
";",
"}",
",",
"opts",
".",
"signal",
")",
";",
"}",
"async",
"getRefNames",
"(",
"opts",
"=",
"{",
"}",
")",
"{",
"const",
"{",
"subadapter",
"}",
"=",
"await",
"this",
".",
"configure",
"(",
")",
";",
"return",
"subadapter",
".",
"getRefNames",
"(",
"opts",
")",
";",
"}",
"freeResources",
"(",
")",
"{",
"}",
"param",
"features",
"param",
"region",
"param",
"bpPerPx",
"returns",
"async",
"generateCoverageBins",
"(",
"features",
",",
"region",
",",
"opts",
")",
"{",
"const",
"{",
"colorBy",
"}",
"=",
"opts",
";",
"const",
"{",
"sequenceAdapter",
"}",
"=",
"await",
"this",
".",
"configure",
"(",
")",
";",
"const",
"{",
"originalRefName",
",",
"refName",
",",
"start",
",",
"end",
"}",
"=",
"region",
";",
"const",
"binMax",
"=",
"Math",
".",
"ceil",
"(",
"region",
".",
"end",
"-",
"region",
".",
"start",
")",
";",
"const",
"skipmap",
"=",
"{",
"}",
"as",
"{",
"[",
"key",
"]",
":",
"{",
"score",
":",
"number",
";",
"feature",
":",
"unknown",
";",
"start",
":",
"number",
";",
"end",
":",
"number",
";",
"strand",
":",
"number",
";",
"xs",
":",
"string",
";",
"}",
";",
"}",
";",
"type",
"BinType",
"=",
"{",
"total",
":",
"number",
";",
"strands",
":",
"{",
"[",
"key",
"]",
":",
"number",
";",
"}",
";",
"}",
";",
"const",
"initBins",
"=",
"Array",
".",
"from",
"(",
"{",
"length",
":",
"binMax",
"}",
",",
"(",
")",
"=>",
"(",
"{",
"total",
":",
"0",
",",
"lowqual",
":",
"{",
"}",
"as",
"BinType",
",",
"cov",
":",
"{",
"}",
"as",
"BinType",
",",
"delskips",
":",
"{",
"}",
"as",
"BinType",
",",
"noncov",
":",
"{",
"}",
"as",
"BinType",
",",
"ref",
":",
"{",
"}",
"as",
"BinType",
",",
"}",
")",
")",
";",
"let",
"regionSeq",
";",
"if",
"(",
"sequenceAdapter",
")",
"{",
"const",
"[",
"feat",
"]",
"=",
"await",
"sequenceAdapter",
".",
"getFeatures",
"(",
"{",
"refName",
":",
"originalRefName",
"||",
"refName",
",",
"start",
",",
"end",
":",
"end",
"+",
"1",
",",
"assemblyName",
":",
"'na'",
",",
"}",
")",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"regionSeq",
"=",
"feat",
"?.",
"get",
"(",
"'seq'",
")",
";",
"}",
"const",
"bins",
"=",
"await",
"features",
".",
"pipe",
"(",
"reduce",
"(",
"(",
"bins",
",",
"feature",
")",
"=>",
"{",
"const",
"cigar",
"=",
"feature",
".",
"get",
"(",
"'CIGAR'",
")",
";",
"const",
"fstart",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"fend",
"=",
"feature",
".",
"get",
"(",
"'end'",
")",
";",
"const",
"fstrand",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
";",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"for",
"(",
"let",
"j",
"=",
"fstart",
";",
"j",
"<",
"fend",
";",
"j",
"++",
")",
"{",
"const",
"i",
"=",
"j",
"-",
"region",
".",
"start",
";",
"if",
"(",
"i",
">=",
"0",
"&&",
"i",
"<",
"bins",
".",
"length",
")",
"{",
"const",
"bin",
"=",
"bins",
"[",
"i",
"]",
";",
"bin",
".",
"total",
"++",
";",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'ref'",
",",
"'ref'",
")",
";",
"}",
"}",
"if",
"(",
"colorBy",
"?.",
"type",
"===",
"'modifications'",
")",
"{",
"const",
"seq",
"=",
"feature",
".",
"get",
"(",
"'seq'",
")",
";",
"const",
"mm",
"=",
"getTagAlt",
"(",
"feature",
",",
"'MM'",
",",
"'Mm'",
")",
"||",
"''",
";",
"const",
"ml",
"=",
"(",
"getTagAlt",
"(",
"feature",
",",
"'ML'",
",",
"'Ml'",
")",
"as",
"number",
"[",
"]",
"|",
"string",
")",
"||",
"[",
"]",
";",
"const",
"probabilities",
"=",
"ml",
"?",
"(",
"typeof",
"ml",
"===",
"'string'",
"?",
"ml",
".",
"split",
"(",
"','",
")",
".",
"map",
"(",
"e",
"=>",
"+",
"e",
")",
":",
"ml",
")",
".",
"map",
"(",
"e",
"=>",
"e",
"/",
"255",
")",
":",
"(",
"getTagAlt",
"(",
"feature",
",",
"'MP'",
",",
"'Mp'",
")",
"as",
"string",
")",
".",
"split",
"(",
"''",
")",
".",
"map",
"(",
"s",
"=>",
"s",
".",
"charCodeAt",
"(",
"0",
")",
"-",
"33",
")",
".",
"map",
"(",
"elt",
"=>",
"Math",
".",
"min",
"(",
"1",
",",
"elt",
"/",
"50",
")",
")",
";",
"let",
"probIndex",
"=",
"0",
";",
"getModificationPositions",
"(",
"mm",
",",
"seq",
",",
"fstrand",
")",
".",
"forEach",
"(",
"(",
"{",
"type",
",",
"positions",
"}",
")",
"=>",
"{",
"const",
"mod",
"=",
"`mod_${",
"type",
"}`",
";",
"for",
"(",
"const",
"pos",
"of",
"getNextRefPos",
"(",
"cigarOps",
",",
"positions",
")",
")",
"{",
"const",
"epos",
"=",
"pos",
"+",
"fstart",
"-",
"region",
".",
"start",
";",
"if",
"(",
"epos",
">=",
"0",
"&&",
"epos",
"<",
"bins",
".",
"length",
"&&",
"pos",
"+",
"fstart",
"<",
"fend",
")",
"{",
"const",
"bin",
"=",
"bins",
"[",
"epos",
"]",
";",
"if",
"(",
"probabilities",
"[",
"probIndex",
"]",
">",
"0.5",
")",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'cov'",
",",
"mod",
")",
";",
"}",
"else",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'lowqual'",
",",
"mod",
")",
";",
"}",
"}",
"probIndex",
"++",
";",
"}",
"}",
")",
";",
"}",
"else",
"if",
"(",
"colorBy",
"?.",
"type",
"===",
"'methylation'",
")",
"{",
"if",
"(",
"!",
"regionSeq",
")",
"{",
"throw",
"new",
"Error",
"(",
"'no region sequence detected, need sequenceAdapter configuration'",
")",
";",
"}",
"const",
"seq",
"=",
"feature",
".",
"get",
"(",
"'seq'",
")",
";",
"const",
"mm",
"=",
"getTagAlt",
"(",
"feature",
",",
"'MM'",
",",
"'Mm'",
")",
"||",
"''",
";",
"const",
"methBins",
"=",
"new",
"Array",
"(",
"region",
".",
"end",
"-",
"region",
".",
"start",
")",
".",
"fill",
"(",
"0",
")",
";",
"getModificationPositions",
"(",
"mm",
",",
"seq",
",",
"fstrand",
")",
".",
"forEach",
"(",
"(",
"{",
"type",
",",
"positions",
"}",
")",
"=>",
"{",
"if",
"(",
"type",
"===",
"'m'",
")",
"{",
"for",
"(",
"const",
"pos",
"of",
"getNextRefPos",
"(",
"cigarOps",
",",
"positions",
")",
")",
"{",
"const",
"epos",
"=",
"pos",
"+",
"fstart",
"-",
"region",
".",
"start",
";",
"if",
"(",
"epos",
">=",
"0",
"&&",
"epos",
"<",
"methBins",
".",
"length",
")",
"{",
"methBins",
"[",
"epos",
"]",
"=",
"1",
";",
"}",
"}",
"}",
"}",
")",
";",
"for",
"(",
"let",
"j",
"=",
"fstart",
";",
"j",
"<",
"fend",
";",
"j",
"++",
")",
"{",
"const",
"i",
"=",
"j",
"-",
"region",
".",
"start",
";",
"if",
"(",
"i",
">=",
"0",
"&&",
"i",
"<",
"bins",
".",
"length",
"-",
"1",
")",
"{",
"const",
"l1",
"=",
"regionSeq",
"[",
"i",
"]",
".",
"toLowerCase",
"(",
")",
";",
"const",
"l2",
"=",
"regionSeq",
"[",
"i",
"+",
"1",
"]",
".",
"toLowerCase",
"(",
")",
";",
"const",
"bin",
"=",
"bins",
"[",
"i",
"]",
";",
"const",
"bin1",
"=",
"bins",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"l1",
"===",
"'c'",
"&&",
"l2",
"===",
"'g'",
")",
"{",
"if",
"(",
"methBins",
"[",
"i",
"]",
"||",
"methBins",
"[",
"i",
"+",
"1",
"]",
")",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'cov'",
",",
"'meth'",
")",
";",
"inc",
"(",
"bin1",
",",
"fstrand",
",",
"'cov'",
",",
"'meth'",
")",
";",
"dec",
"(",
"bin",
",",
"fstrand",
",",
"'ref'",
",",
"'ref'",
")",
";",
"dec",
"(",
"bin1",
",",
"fstrand",
",",
"'ref'",
",",
"'ref'",
")",
";",
"}",
"else",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'cov'",
",",
"'unmeth'",
")",
";",
"inc",
"(",
"bin1",
",",
"fstrand",
",",
"'cov'",
",",
"'unmeth'",
")",
";",
"dec",
"(",
"bin",
",",
"fstrand",
",",
"'ref'",
",",
"'ref'",
")",
";",
"dec",
"(",
"bin1",
",",
"fstrand",
",",
"'ref'",
",",
"'ref'",
")",
";",
"}",
"}",
"}",
"}",
"}",
"else",
"{",
"const",
"mismatches",
"=",
"feature",
".",
"get",
"(",
"'mismatches'",
")",
"as",
"Mismatch",
"[",
"]",
"|",
"undefined",
";",
"if",
"(",
"mismatches",
")",
"{",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"mismatches",
".",
"length",
";",
"i",
"++",
")",
"{",
"const",
"mismatch",
"=",
"mismatches",
"[",
"i",
"]",
";",
"const",
"mstart",
"=",
"fstart",
"+",
"mismatch",
".",
"start",
";",
"for",
"(",
"let",
"j",
"=",
"mstart",
";",
"j",
"<",
"mstart",
"+",
"mismatchLen",
"(",
"mismatch",
")",
";",
"j",
"++",
")",
"{",
"const",
"epos",
"=",
"j",
"-",
"region",
".",
"start",
";",
"if",
"(",
"epos",
">=",
"0",
"&&",
"epos",
"<",
"bins",
".",
"length",
")",
"{",
"const",
"bin",
"=",
"bins",
"[",
"epos",
"]",
";",
"const",
"{",
"base",
",",
"type",
"}",
"=",
"mismatch",
";",
"const",
"interbase",
"=",
"isInterbase",
"(",
"type",
")",
";",
"if",
"(",
"!",
"interbase",
")",
"{",
"dec",
"(",
"bin",
",",
"fstrand",
",",
"'ref'",
",",
"'ref'",
")",
";",
"}",
"else",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'noncov'",
",",
"type",
")",
";",
"}",
"if",
"(",
"type",
"===",
"'deletion'",
"||",
"type",
"===",
"'skip'",
")",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'delskips'",
",",
"type",
")",
";",
"bin",
".",
"total",
"--",
";",
"}",
"else",
"if",
"(",
"!",
"interbase",
")",
"{",
"inc",
"(",
"bin",
",",
"fstrand",
",",
"'cov'",
",",
"base",
")",
";",
"}",
"}",
"}",
"}",
"mismatches",
".",
"filter",
"(",
"mismatch",
"=>",
"mismatch",
".",
"type",
"===",
"'skip'",
")",
".",
"forEach",
"(",
"mismatch",
"=>",
"{",
"const",
"mstart",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
"+",
"mismatch",
".",
"start",
";",
"const",
"start",
"=",
"mstart",
";",
"const",
"end",
"=",
"mstart",
"+",
"mismatch",
".",
"length",
";",
"const",
"strand",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
";",
"const",
"hash",
"=",
"`${",
"start",
"}_${",
"end",
"}_${",
"strand",
"}`",
";",
"if",
"(",
"!",
"skipmap",
"[",
"hash",
"]",
")",
"{",
"skipmap",
"[",
"hash",
"]",
"=",
"{",
"feature",
":",
"feature",
",",
"start",
",",
"end",
",",
"strand",
",",
"xs",
":",
"feature",
".",
"get",
"(",
"'xs'",
")",
"||",
"feature",
".",
"get",
"(",
"'ts'",
")",
"||",
"feature",
".",
"get",
"(",
"'tags'",
")",
".",
"XS",
"||",
"feature",
".",
"get",
"(",
"'tags'",
")",
".",
"TS",
",",
"score",
":",
"1",
",",
"}",
";",
"}",
"else",
"{",
"skipmap",
"[",
"hash",
"]",
".",
"score",
"++",
";",
"}",
"}",
")",
";",
"}",
"}",
"return",
"bins",
";",
"}",
",",
"initBins",
")",
")",
".",
"toPromise",
"(",
")",
";",
"return",
"{",
"bins",
",",
"skipmap",
"}",
";",
"}",
"}",
"const",
"{",
"capabilities",
"}",
"=",
"SNPCoverageAdapter",
";",
"export",
"{",
"capabilities",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
3,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
3,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
143,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
7266,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
18,
null,
143,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660136 | [
"import",
"{",
"createJBrowseTheme",
"}",
"from",
"'@jbrowse/core/ui'",
";",
"import",
"{",
"featureSpanPx",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"bpSpanPx",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"RenderArgsDeserialized",
"as",
"FeatureRenderArgsDeserialized",
"}",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/FeatureRendererType'",
";",
"import",
"{",
"getOrigin",
",",
"getScale",
",",
"ScaleOpts",
",",
"WiggleBaseRenderer",
",",
"YSCALEBAR_LABEL_OFFSET",
",",
"}",
"from",
"'@jbrowse/plugin-wiggle'",
";",
"export",
"interface",
"RenderArgsDeserialized",
"extends",
"FeatureRenderArgsDeserialized",
"{",
"bpPerPx",
":",
"number",
";",
"height",
":",
"number",
";",
"highResolutionScaling",
":",
"number",
";",
"scaleOpts",
":",
"ScaleOpts",
";",
"}",
"export",
"interface",
"RenderArgsDeserializedWithFeatures",
"extends",
"RenderArgsDeserialized",
"{",
"features",
":",
"Map",
"<",
"string",
",",
"Feature",
">",
";",
"ticks",
":",
"{",
"values",
":",
"number",
"[",
"]",
";",
"}",
";",
"displayCrossHatches",
":",
"boolean",
";",
"modificationTagMap",
":",
"Record",
"<",
"string",
",",
"string",
">",
";",
"}",
"type",
"Counts",
"=",
"{",
"[",
"key",
"]",
":",
"{",
"total",
":",
"number",
";",
"strands",
":",
"{",
"[",
"key",
"]",
":",
"number",
";",
"}",
";",
"}",
";",
"}",
";",
"interface",
"SNPInfo",
"{",
"cov",
":",
"Counts",
";",
"noncov",
":",
"Counts",
";",
"total",
":",
"number",
";",
"}",
"export",
"default",
"class",
"SNPCoverageRenderer",
"extends",
"WiggleBaseRenderer",
"{",
"draw",
"(",
"ctx",
",",
"props",
")",
"{",
"const",
"{",
"features",
",",
"regions",
",",
"bpPerPx",
",",
"displayCrossHatches",
",",
"modificationTagMap",
",",
"scaleOpts",
",",
"height",
":",
"unadjustedHeight",
",",
"theme",
":",
"configTheme",
",",
"config",
":",
"cfg",
",",
"ticks",
":",
"{",
"values",
"}",
",",
"}",
"=",
"props",
";",
"const",
"theme",
"=",
"createJBrowseTheme",
"(",
"configTheme",
")",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"const",
"width",
"=",
"(",
"region",
".",
"end",
"-",
"region",
".",
"start",
")",
"/",
"bpPerPx",
";",
"const",
"offset",
"=",
"YSCALEBAR_LABEL_OFFSET",
";",
"const",
"height",
"=",
"unadjustedHeight",
"-",
"offset",
"*",
"2",
";",
"const",
"opts",
"=",
"{",
"...",
"scaleOpts",
",",
"range",
":",
"[",
"0",
",",
"height",
"]",
"}",
";",
"const",
"viewScale",
"=",
"getScale",
"(",
"opts",
")",
";",
"const",
"snpViewScale",
"=",
"getScale",
"(",
"{",
"...",
"opts",
",",
"scaleType",
":",
"'linear'",
"}",
")",
";",
"const",
"originY",
"=",
"getOrigin",
"(",
"scaleOpts",
".",
"scaleType",
")",
";",
"const",
"snpOriginY",
"=",
"getOrigin",
"(",
"'linear'",
")",
";",
"const",
"indicatorThreshold",
"=",
"readConfObject",
"(",
"cfg",
",",
"'indicatorThreshold'",
")",
";",
"const",
"drawInterbaseCounts",
"=",
"readConfObject",
"(",
"cfg",
",",
"'drawInterbaseCounts'",
")",
";",
"const",
"drawArcs",
"=",
"readConfObject",
"(",
"cfg",
",",
"'drawArcs'",
")",
";",
"const",
"drawIndicators",
"=",
"readConfObject",
"(",
"cfg",
",",
"'drawIndicators'",
")",
";",
"const",
"toY",
"=",
"(",
"n",
")",
"=>",
"height",
"-",
"(",
"viewScale",
"(",
"n",
")",
"||",
"0",
")",
"+",
"offset",
";",
"const",
"toHeight",
"=",
"(",
"n",
")",
"=>",
"toY",
"(",
"originY",
")",
"-",
"toY",
"(",
"n",
")",
";",
"const",
"snpToY",
"=",
"(",
"n",
")",
"=>",
"height",
"-",
"(",
"snpViewScale",
"(",
"n",
")",
"||",
"0",
")",
"+",
"offset",
";",
"const",
"snpToHeight",
"=",
"(",
"n",
")",
"=>",
"snpToY",
"(",
"snpOriginY",
")",
"-",
"snpToY",
"(",
"n",
")",
";",
"const",
"colorForBase",
"=",
"{",
"A",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"A",
".",
"main",
",",
"C",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"C",
".",
"main",
",",
"G",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"G",
".",
"main",
",",
"T",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"T",
".",
"main",
",",
"total",
":",
"'lightgrey'",
",",
"insertion",
":",
"'purple'",
",",
"softclip",
":",
"'blue'",
",",
"hardclip",
":",
"'red'",
",",
"meth",
":",
"'red'",
",",
"unmeth",
":",
"'blue'",
",",
"ref",
":",
"'lightgrey'",
",",
"}",
";",
"const",
"feats",
"=",
"[",
"...",
"features",
".",
"values",
"(",
")",
"]",
";",
"const",
"coverage",
"=",
"feats",
".",
"filter",
"(",
"f",
"=>",
"f",
".",
"get",
"(",
"'type'",
")",
"!==",
"'skip'",
")",
";",
"const",
"skips",
"=",
"feats",
".",
"filter",
"(",
"f",
"=>",
"f",
".",
"get",
"(",
"'type'",
")",
"===",
"'skip'",
")",
";",
"ctx",
".",
"fillStyle",
"=",
"colorForBase",
".",
"total",
";",
"coverage",
".",
"forEach",
"(",
"feature",
"=>",
"{",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"featureSpanPx",
"(",
"feature",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"w",
"=",
"rightPx",
"-",
"leftPx",
"+",
"0.3",
";",
"const",
"score",
"=",
"feature",
".",
"get",
"(",
"'score'",
")",
"as",
"number",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"toY",
"(",
"score",
")",
",",
"w",
",",
"toHeight",
"(",
"score",
")",
")",
";",
"}",
")",
";",
"ctx",
".",
"fillStyle",
"=",
"'grey'",
";",
"ctx",
".",
"beginPath",
"(",
")",
";",
"ctx",
".",
"lineTo",
"(",
"0",
",",
"0",
")",
";",
"ctx",
".",
"moveTo",
"(",
"0",
",",
"width",
")",
";",
"ctx",
".",
"stroke",
"(",
")",
";",
"coverage",
".",
"forEach",
"(",
"feature",
"=>",
"{",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"featureSpanPx",
"(",
"feature",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"snpinfo",
"=",
"feature",
".",
"get",
"(",
"'snpinfo'",
")",
"as",
"SNPInfo",
";",
"const",
"w",
"=",
"Math",
".",
"max",
"(",
"rightPx",
"-",
"leftPx",
"+",
"0.3",
",",
"1",
")",
";",
"const",
"totalScore",
"=",
"snpinfo",
".",
"total",
";",
"Object",
".",
"entries",
"(",
"snpinfo",
".",
"cov",
")",
".",
"sort",
"(",
"(",
"[",
"a",
"]",
",",
"[",
"b",
"]",
")",
"=>",
"{",
"if",
"(",
"a",
"<",
"b",
")",
"{",
"return",
"-",
"1",
";",
"}",
"if",
"(",
"a",
">",
"b",
")",
"{",
"return",
"1",
";",
"}",
"return",
"0",
";",
"}",
")",
".",
"reduce",
"(",
"(",
"curr",
",",
"[",
"base",
",",
"{",
"total",
"}",
"]",
")",
"=>",
"{",
"ctx",
".",
"fillStyle",
"=",
"colorForBase",
"[",
"base",
"]",
"||",
"modificationTagMap",
"[",
"base",
".",
"replace",
"(",
"'mod_'",
",",
"''",
")",
"]",
"||",
"'red'",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"snpToY",
"(",
"total",
"+",
"curr",
")",
",",
"w",
",",
"snpToHeight",
"(",
"total",
")",
")",
";",
"return",
"curr",
"+",
"total",
";",
"}",
",",
"0",
")",
";",
"const",
"interbaseEvents",
"=",
"Object",
".",
"entries",
"(",
"snpinfo",
".",
"noncov",
")",
";",
"const",
"indicatorHeight",
"=",
"4.5",
";",
"if",
"(",
"drawInterbaseCounts",
")",
"{",
"interbaseEvents",
".",
"reduce",
"(",
"(",
"curr",
",",
"[",
"base",
",",
"{",
"total",
"}",
"]",
")",
"=>",
"{",
"ctx",
".",
"fillStyle",
"=",
"colorForBase",
"[",
"base",
"]",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
"-",
"0.6",
",",
"indicatorHeight",
"+",
"snpToHeight",
"(",
"curr",
")",
",",
"1.2",
",",
"snpToHeight",
"(",
"total",
")",
")",
";",
"return",
"curr",
"+",
"total",
";",
"}",
",",
"0",
")",
";",
"}",
"if",
"(",
"drawIndicators",
")",
"{",
"let",
"accum",
"=",
"0",
";",
"let",
"max",
"=",
"0",
";",
"let",
"maxBase",
"=",
"''",
";",
"interbaseEvents",
".",
"forEach",
"(",
"(",
"[",
"base",
",",
"{",
"total",
"}",
"]",
")",
"=>",
"{",
"accum",
"+=",
"total",
";",
"if",
"(",
"total",
">",
"max",
")",
"{",
"max",
"=",
"total",
";",
"maxBase",
"=",
"base",
";",
"}",
"}",
")",
";",
"if",
"(",
"accum",
">",
"totalScore",
"*",
"indicatorThreshold",
"&&",
"totalScore",
">",
"7",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"colorForBase",
"[",
"maxBase",
"]",
";",
"ctx",
".",
"beginPath",
"(",
")",
";",
"ctx",
".",
"moveTo",
"(",
"leftPx",
"-",
"3",
",",
"0",
")",
";",
"ctx",
".",
"lineTo",
"(",
"leftPx",
"+",
"3",
",",
"0",
")",
";",
"ctx",
".",
"lineTo",
"(",
"leftPx",
",",
"indicatorHeight",
")",
";",
"ctx",
".",
"fill",
"(",
")",
";",
"}",
"}",
"}",
")",
";",
"ctx",
".",
"globalAlpha",
"=",
"0.7",
";",
"if",
"(",
"drawArcs",
")",
"{",
"skips",
".",
"forEach",
"(",
"f",
"=>",
"{",
"const",
"[",
"left",
",",
"right",
"]",
"=",
"bpSpanPx",
"(",
"f",
".",
"get",
"(",
"'start'",
")",
",",
"f",
".",
"get",
"(",
"'end'",
")",
",",
"region",
",",
"bpPerPx",
")",
";",
"ctx",
".",
"beginPath",
"(",
")",
";",
"const",
"str",
"=",
"f",
".",
"get",
"(",
"'strand'",
")",
"as",
"number",
";",
"const",
"xs",
"=",
"f",
".",
"get",
"(",
"'xs'",
")",
"as",
"string",
";",
"const",
"pos",
"=",
"'rgb(255,200,200)'",
";",
"const",
"neg",
"=",
"'rgb(200,200,255)'",
";",
"const",
"neutral",
"=",
"'rgb(200,200,200)'",
";",
"if",
"(",
"xs",
"===",
"'+'",
")",
"{",
"ctx",
".",
"strokeStyle",
"=",
"pos",
";",
"}",
"else",
"if",
"(",
"xs",
"===",
"'-'",
")",
"{",
"ctx",
".",
"strokeStyle",
"=",
"neg",
";",
"}",
"else",
"if",
"(",
"str",
"===",
"1",
")",
"{",
"ctx",
".",
"strokeStyle",
"=",
"pos",
";",
"}",
"else",
"if",
"(",
"str",
"===",
"-",
"1",
")",
"{",
"ctx",
".",
"strokeStyle",
"=",
"neg",
";",
"}",
"else",
"{",
"ctx",
".",
"strokeStyle",
"=",
"neutral",
";",
"}",
"ctx",
".",
"lineWidth",
"=",
"Math",
".",
"log",
"(",
"f",
".",
"get",
"(",
"'score'",
")",
"+",
"1",
")",
";",
"ctx",
".",
"moveTo",
"(",
"left",
",",
"height",
"-",
"offset",
"*",
"2",
")",
";",
"ctx",
".",
"bezierCurveTo",
"(",
"left",
",",
"0",
",",
"right",
",",
"0",
",",
"right",
",",
"height",
"-",
"offset",
"*",
"2",
")",
";",
"ctx",
".",
"stroke",
"(",
")",
";",
"}",
")",
";",
"}",
"if",
"(",
"displayCrossHatches",
")",
"{",
"ctx",
".",
"lineWidth",
"=",
"1",
";",
"ctx",
".",
"strokeStyle",
"=",
"'rgba(140,140,140,0.8)'",
";",
"values",
".",
"forEach",
"(",
"tick",
"=>",
"{",
"ctx",
".",
"beginPath",
"(",
")",
";",
"ctx",
".",
"moveTo",
"(",
"0",
",",
"Math",
".",
"round",
"(",
"toY",
"(",
"tick",
")",
")",
")",
";",
"ctx",
".",
"lineTo",
"(",
"width",
",",
"Math",
".",
"round",
"(",
"toY",
"(",
"tick",
")",
")",
")",
";",
"ctx",
".",
"stroke",
"(",
")",
";",
"}",
")",
";",
"}",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
115,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660137 | [
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"ConfigSchema",
"from",
"'./configSchema'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"SNPCoverageRenderer",
"from",
"'./SNPCoverageRenderer'",
";",
"import",
"{",
"WiggleRendering",
"}",
"from",
"'@jbrowse/plugin-wiggle'",
";",
"export",
"const",
"configSchema",
"=",
"ConfigurationSchema",
"(",
"'SNPCoverageRenderer'",
",",
"{",
"}",
",",
"{",
"baseConfiguration",
":",
"ConfigSchema",
",",
"explicitlyTyped",
":",
"true",
"}",
")",
";",
"export",
"default",
"function",
"register",
"(",
"pluginManager",
")",
"{",
"pluginManager",
".",
"addRendererType",
"(",
"(",
")",
"=>",
"new",
"SNPCoverageRenderer",
"(",
"{",
"name",
":",
"'SNPCoverageRenderer'",
",",
"ReactComponent",
":",
"WiggleRendering",
",",
"configSchema",
",",
"pluginManager",
",",
"}",
")",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660138 | [
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"doesIntersect2",
"}",
"from",
"'@jbrowse/core/util/range'",
";",
"import",
"{",
"Mismatch",
"}",
"from",
"'../BamAdapter/MismatchParser'",
";",
"interface",
"SortObject",
"{",
"pos",
":",
"number",
";",
"type",
":",
"string",
";",
"tag",
"?",
":",
"string",
";",
"}",
"export",
"const",
"sortFeature",
"=",
"(",
"features",
",",
"sortedBy",
")",
"=>",
"{",
"const",
"featureArray",
"=",
"Array",
".",
"from",
"(",
"features",
".",
"values",
"(",
")",
")",
";",
"const",
"featuresInCenterLine",
"=",
"[",
"]",
";",
"const",
"featuresOutsideCenter",
"=",
"[",
"]",
";",
"const",
"{",
"pos",
",",
"type",
"}",
"=",
"sortedBy",
";",
"featureArray",
".",
"forEach",
"(",
"innerArray",
"=>",
"{",
"const",
"feature",
"=",
"innerArray",
";",
"const",
"start",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"end",
"=",
"feature",
".",
"get",
"(",
"'end'",
")",
";",
"if",
"(",
"doesIntersect2",
"(",
"pos",
"-",
"1",
",",
"pos",
",",
"start",
",",
"end",
")",
")",
"{",
"featuresInCenterLine",
".",
"push",
"(",
"innerArray",
")",
";",
"}",
"else",
"{",
"featuresOutsideCenter",
".",
"push",
"(",
"innerArray",
")",
";",
"}",
"}",
")",
";",
"const",
"isCram",
"=",
"featureArray",
".",
"length",
"?",
"featureArray",
"[",
"0",
"]",
".",
"get",
"(",
"'tags'",
")",
":",
"false",
";",
"switch",
"(",
"type",
")",
"{",
"case",
"'Start location'",
":",
"{",
"featuresInCenterLine",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"get",
"(",
"'start'",
")",
"-",
"b",
".",
"get",
"(",
"'start'",
")",
")",
";",
"break",
";",
"}",
"case",
"'tag'",
":",
"{",
"const",
"tag",
"=",
"sortedBy",
".",
"tag",
"as",
"string",
";",
"const",
"getTag",
"=",
"(",
"f",
",",
"t",
")",
"=>",
"{",
"return",
"isCram",
"?",
"f",
".",
"get",
"(",
"'tags'",
")",
"[",
"t",
"]",
":",
"f",
".",
"get",
"(",
"t",
")",
";",
"}",
";",
"const",
"isString",
"=",
"featuresInCenterLine",
"[",
"0",
"]",
"&&",
"typeof",
"getTag",
"(",
"featuresInCenterLine",
"[",
"0",
"]",
",",
"tag",
")",
"===",
"'string'",
";",
"if",
"(",
"isString",
")",
"{",
"featuresInCenterLine",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"getTag",
"(",
"b",
",",
"tag",
")",
".",
"localeCompare",
"(",
"getTag",
"(",
"a",
",",
"tag",
")",
")",
")",
";",
"}",
"else",
"{",
"featuresInCenterLine",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"(",
"getTag",
"(",
"b",
",",
"tag",
")",
"||",
"0",
")",
"-",
"(",
"getTag",
"(",
"a",
",",
"tag",
")",
"||",
"0",
")",
")",
";",
"}",
"break",
";",
"}",
"case",
"'Base pair'",
":",
"{",
"const",
"baseSortArray",
"=",
"[",
"]",
";",
"featuresInCenterLine",
".",
"forEach",
"(",
"feature",
"=>",
"{",
"const",
"mismatches",
"=",
"feature",
".",
"get",
"(",
"'mismatches'",
")",
";",
"mismatches",
".",
"forEach",
"(",
"mismatch",
"=>",
"{",
"const",
"start",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"offset",
"=",
"start",
"+",
"mismatch",
".",
"start",
"+",
"1",
";",
"const",
"consuming",
"=",
"mismatch",
".",
"type",
"===",
"'insertion'",
"||",
"mismatch",
".",
"type",
"===",
"'softclip'",
";",
"const",
"len",
"=",
"consuming",
"?",
"0",
":",
"mismatch",
".",
"length",
";",
"if",
"(",
"pos",
">=",
"offset",
"&&",
"pos",
"<",
"offset",
"+",
"len",
")",
"{",
"baseSortArray",
".",
"push",
"(",
"[",
"feature",
".",
"id",
"(",
")",
",",
"mismatch",
"]",
")",
";",
"}",
"}",
")",
";",
"}",
")",
";",
"const",
"baseMap",
"=",
"new",
"Map",
"(",
"baseSortArray",
")",
";",
"featuresInCenterLine",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"{",
"const",
"aMismatch",
"=",
"baseMap",
".",
"get",
"(",
"a",
".",
"id",
"(",
")",
")",
";",
"const",
"bMismatch",
"=",
"baseMap",
".",
"get",
"(",
"b",
".",
"id",
"(",
")",
")",
";",
"const",
"acode",
"=",
"bMismatch",
"&&",
"bMismatch",
".",
"base",
".",
"toUpperCase",
"(",
")",
";",
"const",
"bcode",
"=",
"aMismatch",
"&&",
"aMismatch",
".",
"base",
".",
"toUpperCase",
"(",
")",
";",
"if",
"(",
"acode",
"===",
"bcode",
"&&",
"acode",
"===",
"'*'",
")",
"{",
"return",
"aMismatch",
".",
"length",
"-",
"bMismatch",
".",
"length",
";",
"}",
"return",
"(",
"(",
"acode",
"?",
"acode",
".",
"charCodeAt",
"(",
"0",
")",
":",
"0",
")",
"-",
"(",
"bcode",
"?",
"bcode",
".",
"charCodeAt",
"(",
"0",
")",
":",
"0",
")",
")",
";",
"}",
")",
";",
"break",
";",
"}",
"case",
"'Read strand'",
":",
"{",
"featuresInCenterLine",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"get",
"(",
"'strand'",
")",
"<=",
"b",
".",
"get",
"(",
"'strand'",
")",
"?",
"1",
":",
"-",
"1",
")",
";",
"break",
";",
"}",
"}",
"const",
"sortedMap",
"=",
"new",
"Map",
"(",
"featuresInCenterLine",
".",
"concat",
"(",
"featuresOutsideCenter",
")",
".",
"map",
"(",
"feature",
"=>",
"[",
"feature",
".",
"id",
"(",
")",
",",
"feature",
"]",
")",
")",
";",
"return",
"sortedMap",
";",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
19,
null,
null,
19,
null,
0,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
536,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
19,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
19,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660139 | [
"import",
"deepEqual",
"from",
"'fast-deep-equal'",
";",
"import",
"{",
"LayoutSession",
"}",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'",
";",
"import",
"{",
"AnyConfigurationModel",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"import",
"SerializableFilterChain",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'",
";",
"import",
"GranularRectLayout",
"from",
"'@jbrowse/core/util/layouts/GranularRectLayout'",
";",
"import",
"MultiLayout",
"from",
"'@jbrowse/core/util/layouts/MultiLayout'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"export",
"interface",
"PileupLayoutSessionProps",
"{",
"config",
":",
"AnyConfigurationModel",
";",
"bpPerPx",
":",
"number",
";",
"filters",
":",
"SerializableFilterChain",
";",
"sortedBy",
":",
"unknown",
";",
"showSoftClip",
":",
"unknown",
";",
"}",
"type",
"MyMultiLayout",
"=",
"MultiLayout",
"<",
"GranularRectLayout",
"<",
"unknown",
">",
",",
"unknown",
">",
";",
"interface",
"CachedPileupLayout",
"{",
"layout",
":",
"MyMultiLayout",
";",
"config",
":",
"AnyConfigurationModel",
";",
"filters",
":",
"SerializableFilterChain",
";",
"sortedBy",
":",
"unknown",
";",
"showSoftClip",
":",
"boolean",
";",
"}",
"export",
"class",
"PileupLayoutSession",
"extends",
"LayoutSession",
"{",
"sortedBy",
":",
"unknown",
";",
"showSoftClip",
"=",
"false",
";",
"constructor",
"(",
"args",
")",
"{",
"super",
"(",
"args",
")",
";",
"this",
".",
"config",
"=",
"args",
".",
"config",
";",
"}",
"cachedLayoutIsValid",
"(",
"cachedLayout",
")",
"{",
"return",
"(",
"super",
".",
"cachedLayoutIsValid",
"(",
"cachedLayout",
")",
"&&",
"this",
".",
"showSoftClip",
"===",
"cachedLayout",
".",
"showSoftClip",
"&&",
"deepEqual",
"(",
"this",
".",
"sortedBy",
",",
"cachedLayout",
".",
"sortedBy",
")",
")",
";",
"}",
"cachedLayout",
":",
"CachedPileupLayout",
"|",
"undefined",
";",
"get",
"layout",
"(",
")",
":",
"MyMultiLayout",
"{",
"if",
"(",
"!",
"this",
".",
"cachedLayout",
"||",
"!",
"this",
".",
"cachedLayoutIsValid",
"(",
"this",
".",
"cachedLayout",
")",
")",
"{",
"this",
".",
"cachedLayout",
"=",
"{",
"layout",
":",
"this",
".",
"makeLayout",
"(",
")",
",",
"config",
":",
"readConfObject",
"(",
"this",
".",
"config",
")",
",",
"filters",
":",
"this",
".",
"filters",
",",
"sortedBy",
":",
"this",
".",
"sortedBy",
",",
"showSoftClip",
":",
"this",
".",
"showSoftClip",
",",
"}",
";",
"}",
"return",
"this",
".",
"cachedLayout",
".",
"layout",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660140 | [
"import",
"{",
"AnyConfigurationModel",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"import",
"{",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"BoxRendererType",
",",
"{",
"RenderArgs",
",",
"RenderArgsSerialized",
",",
"RenderArgsDeserialized",
"as",
"BoxRenderArgsDeserialized",
",",
"RenderResults",
",",
"ResultsSerialized",
",",
"ResultsDeserialized",
",",
"}",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'",
";",
"import",
"{",
"Theme",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"{",
"createJBrowseTheme",
"}",
"from",
"'@jbrowse/core/ui'",
";",
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"bpSpanPx",
",",
"iterMap",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"Color",
"from",
"'color'",
";",
"import",
"{",
"Region",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"{",
"renderToAbstractCanvas",
"}",
"from",
"'@jbrowse/core/util/offscreenCanvasUtils'",
";",
"import",
"{",
"BaseLayout",
"}",
"from",
"'@jbrowse/core/util/layouts/BaseLayout'",
";",
"import",
"{",
"getAdapter",
"}",
"from",
"'@jbrowse/core/data_adapters/dataAdapterCache'",
";",
"import",
"{",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"Mismatch",
",",
"parseCigar",
",",
"getModificationPositions",
",",
"getNextRefPos",
",",
"}",
"from",
"'../BamAdapter/MismatchParser'",
";",
"import",
"{",
"sortFeature",
"}",
"from",
"'./sortUtil'",
";",
"import",
"{",
"getTagAlt",
",",
"orientationTypes",
"}",
"from",
"'../util'",
";",
"import",
"{",
"PileupLayoutSession",
",",
"PileupLayoutSessionProps",
",",
"}",
"from",
"'./PileupLayoutSession'",
";",
"import",
"{",
"BaseFeatureDataAdapter",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"function",
"getColorBaseMap",
"(",
"theme",
")",
"{",
"return",
"{",
"A",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"A",
".",
"main",
",",
"C",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"C",
".",
"main",
",",
"G",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"G",
".",
"main",
",",
"T",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"T",
".",
"main",
",",
"deletion",
":",
"'#808080'",
",",
"}",
";",
"}",
"export",
"interface",
"RenderArgsDeserialized",
"extends",
"BoxRenderArgsDeserialized",
"{",
"colorBy",
"?",
":",
"{",
"type",
":",
"string",
";",
"tag",
"?",
":",
"string",
";",
"}",
";",
"colorTagMap",
"?",
":",
"Record",
"<",
"string",
",",
"string",
">",
";",
"modificationTagMap",
"?",
":",
"Record",
"<",
"string",
",",
"string",
">",
";",
"sortedBy",
"?",
":",
"{",
"type",
":",
"string",
";",
"pos",
":",
"number",
";",
"refName",
":",
"string",
";",
"assemblyName",
":",
"string",
";",
"tag",
"?",
":",
"string",
";",
"}",
";",
"showSoftClip",
":",
"boolean",
";",
"highResolutionScaling",
":",
"number",
";",
"}",
"export",
"interface",
"RenderArgsDeserializedWithFeaturesAndLayout",
"extends",
"RenderArgsDeserialized",
"{",
"features",
":",
"Map",
"<",
"string",
",",
"Feature",
">",
";",
"layout",
":",
"BaseLayout",
"<",
"Feature",
">",
";",
"regionSequence",
"?",
":",
"string",
";",
"}",
"interface",
"LayoutRecord",
"{",
"feature",
":",
"Feature",
";",
"leftPx",
":",
"number",
";",
"rightPx",
":",
"number",
";",
"topPx",
":",
"number",
";",
"heightPx",
":",
"number",
";",
"}",
"const",
"alignmentColoring",
"=",
"{",
"color_fwd_strand_not_proper",
":",
"'#ECC8C8'",
",",
"color_rev_strand_not_proper",
":",
"'#BEBED8'",
",",
"color_fwd_strand",
":",
"'#EC8B8B'",
",",
"color_rev_strand",
":",
"'#8F8FD8'",
",",
"color_fwd_missing_mate",
":",
"'#D11919'",
",",
"color_rev_missing_mate",
":",
"'#1919D1'",
",",
"color_fwd_diff_chr",
":",
"'#000'",
",",
"color_rev_diff_chr",
":",
"'#969696'",
",",
"color_pair_lr",
":",
"'#c8c8c8'",
",",
"color_pair_rr",
":",
"'navy'",
",",
"color_pair_rl",
":",
"'teal'",
",",
"color_pair_ll",
":",
"'green'",
",",
"color_nostrand",
":",
"'#c8c8c8'",
",",
"color_interchrom",
":",
"'orange'",
",",
"color_longinsert",
":",
"'red'",
",",
"color_shortinsert",
":",
"'pink'",
",",
"}",
";",
"interface",
"LayoutFeature",
"{",
"heightPx",
":",
"number",
";",
"topPx",
":",
"number",
";",
"feature",
":",
"Feature",
";",
"}",
"function",
"shouldDrawMismatches",
"(",
"type",
"?",
")",
"{",
"return",
"!",
"[",
"'methylation'",
",",
"'modifications'",
"]",
".",
"includes",
"(",
"type",
"||",
"''",
")",
";",
"}",
"export",
"default",
"class",
"PileupRenderer",
"extends",
"BoxRendererType",
"{",
"supportsSVG",
"=",
"true",
";",
"getCharWidthHeight",
"(",
"ctx",
")",
"{",
"const",
"charWidth",
"=",
"ctx",
".",
"measureText",
"(",
"'A'",
")",
".",
"width",
";",
"const",
"charHeight",
"=",
"ctx",
".",
"measureText",
"(",
"'M'",
")",
".",
"width",
";",
"return",
"{",
"charWidth",
",",
"charHeight",
"}",
";",
"}",
"layoutFeature",
"(",
"{",
"feature",
",",
"layout",
",",
"bpPerPx",
",",
"region",
",",
"showSoftClip",
",",
"heightPx",
",",
"displayMode",
",",
"}",
")",
"{",
"let",
"expansionBefore",
"=",
"0",
";",
"let",
"expansionAfter",
"=",
"0",
";",
"if",
"(",
"showSoftClip",
")",
"{",
"const",
"mismatches",
"=",
"feature",
".",
"get",
"(",
"'mismatches'",
")",
"as",
"Mismatch",
"[",
"]",
";",
"const",
"seq",
"=",
"feature",
".",
"get",
"(",
"'seq'",
")",
"as",
"string",
";",
"if",
"(",
"seq",
")",
"{",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"mismatches",
".",
"length",
";",
"i",
"+=",
"1",
")",
"{",
"const",
"{",
"type",
",",
"start",
",",
"cliplen",
"=",
"0",
"}",
"=",
"mismatches",
"[",
"i",
"]",
";",
"if",
"(",
"type",
"===",
"'softclip'",
")",
"{",
"start",
"===",
"0",
"?",
"(",
"expansionBefore",
"=",
"cliplen",
")",
":",
"(",
"expansionAfter",
"=",
"cliplen",
")",
";",
"}",
"}",
"}",
"}",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"feature",
".",
"get",
"(",
"'start'",
")",
"-",
"expansionBefore",
",",
"feature",
".",
"get",
"(",
"'end'",
")",
"+",
"expansionAfter",
",",
"region",
",",
"bpPerPx",
")",
";",
"if",
"(",
"displayMode",
"===",
"'compact'",
")",
"{",
"heightPx",
"/=",
"3",
";",
"}",
"if",
"(",
"feature",
".",
"get",
"(",
"'refName'",
")",
"!==",
"region",
".",
"refName",
")",
"{",
"throw",
"new",
"Error",
"(",
"`feature ${",
"feature",
".",
"id",
"(",
")",
"} is not on the current region's reference sequence ${",
"region",
".",
"refName",
"}`",
")",
";",
"}",
"const",
"topPx",
"=",
"layout",
".",
"addRect",
"(",
"feature",
".",
"id",
"(",
")",
",",
"feature",
".",
"get",
"(",
"'start'",
")",
"-",
"expansionBefore",
",",
"feature",
".",
"get",
"(",
"'end'",
")",
"+",
"expansionAfter",
",",
"heightPx",
")",
";",
"if",
"(",
"topPx",
"===",
"null",
")",
"{",
"return",
"null",
";",
"}",
"return",
"{",
"feature",
",",
"leftPx",
",",
"rightPx",
",",
"topPx",
":",
"displayMode",
"===",
"'collapse'",
"?",
"0",
":",
"topPx",
",",
"heightPx",
",",
"}",
";",
"}",
"getExpandedRegion",
"(",
"region",
",",
"renderArgs",
")",
"{",
"const",
"{",
"config",
",",
"showSoftClip",
"}",
"=",
"renderArgs",
";",
"const",
"maxClippingSize",
"=",
"readConfObject",
"(",
"config",
",",
"'maxClippingSize'",
")",
";",
"const",
"{",
"start",
",",
"end",
"}",
"=",
"region",
";",
"const",
"len",
"=",
"end",
"-",
"start",
";",
"const",
"bpExpansion",
"=",
"Math",
".",
"max",
"(",
"len",
",",
"showSoftClip",
"?",
"Math",
".",
"round",
"(",
"maxClippingSize",
")",
":",
"0",
")",
";",
"return",
"{",
"...",
"region",
",",
"start",
":",
"Math",
".",
"floor",
"(",
"Math",
".",
"max",
"(",
"start",
"-",
"bpExpansion",
",",
"0",
")",
")",
",",
"end",
":",
"Math",
".",
"ceil",
"(",
"end",
"+",
"bpExpansion",
")",
",",
"}",
";",
"}",
"colorByOrientation",
"(",
"feature",
",",
"config",
")",
"{",
"return",
"alignmentColoring",
"[",
"this",
".",
"getOrientation",
"(",
"feature",
",",
"config",
")",
"||",
"'color_nostrand'",
"]",
";",
"}",
"getOrientation",
"(",
"feature",
",",
"config",
")",
"{",
"const",
"orientationType",
"=",
"readConfObject",
"(",
"config",
",",
"'orientationType'",
")",
"as",
"'fr'",
"|",
"'ff'",
"|",
"'rf'",
";",
"const",
"type",
"=",
"orientationTypes",
"[",
"orientationType",
"]",
";",
"const",
"orientation",
"=",
"type",
"[",
"feature",
".",
"get",
"(",
"'pair_orientation'",
")",
"as",
"string",
"]",
";",
"const",
"map",
"=",
"{",
"LR",
":",
"'color_pair_lr'",
",",
"RR",
":",
"'color_pair_rr'",
",",
"RL",
":",
"'color_pair_rl'",
",",
"LL",
":",
"'color_pair_ll'",
",",
"}",
";",
"return",
"map",
"[",
"orientation",
"]",
";",
"}",
"colorByInsertSize",
"(",
"feature",
",",
"_config",
")",
"{",
"return",
"feature",
".",
"get",
"(",
"'is_paired'",
")",
"&&",
"feature",
".",
"get",
"(",
"'seq_id'",
")",
"!==",
"feature",
".",
"get",
"(",
"'next_seq_id'",
")",
"?",
"'#555'",
":",
"`hsl(${",
"Math",
".",
"abs",
"(",
"feature",
".",
"get",
"(",
"'template_length'",
")",
")",
"/",
"10",
"},50%,50%)`",
";",
"}",
"colorByStranded",
"(",
"feature",
",",
"_config",
")",
"{",
"const",
"flags",
"=",
"feature",
".",
"get",
"(",
"'flags'",
")",
";",
"const",
"strand",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
";",
"if",
"(",
"flags",
"&",
"1",
")",
"{",
"const",
"revflag",
"=",
"flags",
"&",
"64",
";",
"const",
"flipper",
"=",
"revflag",
"?",
"-",
"1",
":",
"1",
";",
"if",
"(",
"flags",
"&",
"2",
")",
"{",
"return",
"strand",
"*",
"flipper",
"===",
"1",
"?",
"'color_rev_strand'",
":",
"'color_fwd_strand'",
";",
"}",
"if",
"(",
"feature",
".",
"get",
"(",
"'multi_segment_next_segment_unmapped'",
")",
")",
"{",
"return",
"strand",
"*",
"flipper",
"===",
"1",
"?",
"'color_rev_missing_mate'",
":",
"'color_fwd_missing_mate'",
";",
"}",
"if",
"(",
"feature",
".",
"get",
"(",
"'seq_id'",
")",
"===",
"feature",
".",
"get",
"(",
"'next_seq_id'",
")",
")",
"{",
"return",
"strand",
"*",
"flipper",
"===",
"1",
"?",
"'color_rev_strand_not_proper'",
":",
"'color_fwd_strand_not_proper'",
";",
"}",
"return",
"strand",
"===",
"1",
"?",
"'color_fwd_diff_chr'",
":",
"'color_rev_diff_chr'",
";",
"}",
"return",
"strand",
"===",
"1",
"?",
"'color_fwd_strand'",
":",
"'color_rev_strand'",
";",
"}",
"colorByPerBaseQuality",
"(",
"ctx",
",",
"feat",
",",
"_config",
",",
"region",
",",
"bpPerPx",
")",
"{",
"const",
"{",
"feature",
",",
"topPx",
",",
"heightPx",
"}",
"=",
"feat",
";",
"const",
"qual",
"=",
"feature",
".",
"get",
"(",
"'qual'",
")",
"||",
"''",
";",
"const",
"scores",
"=",
"qual",
".",
"split",
"(",
"' '",
")",
".",
"map",
"(",
"val",
"=>",
"+",
"val",
")",
";",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"feature",
".",
"get",
"(",
"'CIGAR'",
")",
")",
";",
"const",
"width",
"=",
"1",
"/",
"bpPerPx",
";",
"const",
"start",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"for",
"(",
"let",
"i",
"=",
"0",
",",
"j",
"=",
"0",
",",
"k",
"=",
"0",
";",
"k",
"<",
"scores",
".",
"length",
";",
"i",
"+=",
"2",
",",
"k",
"++",
")",
"{",
"const",
"len",
"=",
"+",
"cigarOps",
"[",
"i",
"]",
";",
"const",
"op",
"=",
"cigarOps",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"===",
"'S'",
"||",
"op",
"===",
"'I'",
")",
"{",
"k",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'D'",
"||",
"op",
"===",
"'N'",
")",
"{",
"j",
"+=",
"len",
";",
"}",
"else",
"if",
"(",
"op",
"===",
"'M'",
"||",
"op",
"===",
"'X'",
"||",
"op",
"===",
"'='",
")",
"{",
"for",
"(",
"let",
"m",
"=",
"0",
";",
"m",
"<",
"len",
";",
"m",
"++",
")",
"{",
"const",
"score",
"=",
"scores",
"[",
"k",
"+",
"m",
"]",
";",
"ctx",
".",
"fillStyle",
"=",
"`hsl(${",
"score",
"===",
"255",
"?",
"150",
":",
"score",
"*",
"1.5",
"},55%,50%)`",
";",
"const",
"[",
"leftPx",
"]",
"=",
"bpSpanPx",
"(",
"start",
"+",
"j",
"+",
"m",
",",
"start",
"+",
"j",
"+",
"m",
"+",
"1",
",",
"region",
",",
"bpPerPx",
")",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"width",
"+",
"0.5",
",",
"heightPx",
")",
";",
"}",
"j",
"+=",
"len",
";",
"}",
"}",
"}",
"colorByModifications",
"(",
"ctx",
",",
"layoutFeature",
",",
"_config",
",",
"region",
",",
"bpPerPx",
",",
"props",
")",
"{",
"const",
"{",
"feature",
",",
"topPx",
",",
"heightPx",
"}",
"=",
"layoutFeature",
";",
"const",
"{",
"modificationTagMap",
"=",
"{",
"}",
"}",
"=",
"props",
";",
"const",
"mm",
"=",
"(",
"getTagAlt",
"(",
"feature",
",",
"'MM'",
",",
"'Mm'",
")",
"as",
"string",
")",
"||",
"''",
";",
"const",
"ml",
"=",
"(",
"getTagAlt",
"(",
"feature",
",",
"'ML'",
",",
"'Ml'",
")",
"as",
"number",
"[",
"]",
"|",
"string",
")",
"||",
"[",
"]",
";",
"const",
"probabilities",
"=",
"ml",
"?",
"(",
"typeof",
"ml",
"===",
"'string'",
"?",
"ml",
".",
"split",
"(",
"','",
")",
".",
"map",
"(",
"e",
"=>",
"+",
"e",
")",
":",
"ml",
")",
".",
"map",
"(",
"e",
"=>",
"e",
"/",
"255",
")",
":",
"(",
"getTagAlt",
"(",
"feature",
",",
"'MP'",
",",
"'Mp'",
")",
"as",
"string",
")",
".",
"split",
"(",
"''",
")",
".",
"map",
"(",
"s",
"=>",
"s",
".",
"charCodeAt",
"(",
"0",
")",
"-",
"33",
")",
".",
"map",
"(",
"elt",
"=>",
"Math",
".",
"min",
"(",
"1",
",",
"elt",
"/",
"50",
")",
")",
";",
"const",
"cigar",
"=",
"feature",
".",
"get",
"(",
"'CIGAR'",
")",
";",
"const",
"start",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"end",
"=",
"feature",
".",
"get",
"(",
"'end'",
")",
";",
"const",
"seq",
"=",
"feature",
".",
"get",
"(",
"'seq'",
")",
";",
"const",
"strand",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
";",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"const",
"modifications",
"=",
"getModificationPositions",
"(",
"mm",
",",
"seq",
",",
"strand",
")",
";",
"let",
"probIndex",
"=",
"0",
";",
"modifications",
".",
"forEach",
"(",
"(",
"{",
"type",
",",
"positions",
"}",
")",
"=>",
"{",
"const",
"col",
"=",
"modificationTagMap",
"[",
"type",
"]",
"||",
"'black'",
";",
"const",
"base",
"=",
"Color",
"(",
"col",
")",
";",
"for",
"(",
"const",
"readPos",
"of",
"getNextRefPos",
"(",
"cigarOps",
",",
"positions",
")",
")",
"{",
"if",
"(",
"readPos",
">=",
"0",
"&&",
"start",
"+",
"readPos",
"<",
"end",
")",
"{",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"start",
"+",
"readPos",
",",
"start",
"+",
"readPos",
"+",
"1",
",",
"region",
",",
"bpPerPx",
")",
";",
"ctx",
".",
"fillStyle",
"=",
"base",
".",
"alpha",
"(",
"probabilities",
"[",
"probIndex",
"]",
"+",
"0.1",
")",
".",
"hsl",
"(",
")",
".",
"string",
"(",
")",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"rightPx",
"-",
"leftPx",
"+",
"0.5",
",",
"heightPx",
")",
";",
"}",
"probIndex",
"++",
";",
"}",
"}",
")",
";",
"}",
"colorByMethylation",
"(",
"ctx",
",",
"layoutFeature",
",",
"_config",
",",
"region",
",",
"bpPerPx",
",",
"props",
")",
"{",
"const",
"{",
"regionSequence",
"}",
"=",
"props",
";",
"const",
"{",
"feature",
",",
"topPx",
",",
"heightPx",
"}",
"=",
"layoutFeature",
";",
"const",
"mm",
"=",
"getTagAlt",
"(",
"feature",
",",
"'MM'",
",",
"'Mm'",
")",
"||",
"''",
";",
"if",
"(",
"!",
"regionSequence",
")",
"{",
"throw",
"new",
"Error",
"(",
"'region sequence required for methylation'",
")",
";",
"}",
"const",
"cigar",
"=",
"feature",
".",
"get",
"(",
"'CIGAR'",
")",
";",
"const",
"fstart",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"fend",
"=",
"feature",
".",
"get",
"(",
"'end'",
")",
";",
"const",
"seq",
"=",
"feature",
".",
"get",
"(",
"'seq'",
")",
";",
"const",
"strand",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
";",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"const",
"{",
"start",
":",
"rstart",
",",
"end",
":",
"rend",
"}",
"=",
"region",
";",
"const",
"methBins",
"=",
"new",
"Array",
"(",
"rend",
"-",
"rstart",
")",
".",
"fill",
"(",
"0",
")",
";",
"getModificationPositions",
"(",
"mm",
",",
"seq",
",",
"strand",
")",
".",
"forEach",
"(",
"(",
"{",
"type",
",",
"positions",
"}",
")",
"=>",
"{",
"if",
"(",
"type",
"===",
"'m'",
"&&",
"positions",
")",
"{",
"for",
"(",
"const",
"pos",
"of",
"getNextRefPos",
"(",
"cigarOps",
",",
"positions",
")",
")",
"{",
"const",
"epos",
"=",
"pos",
"+",
"fstart",
"-",
"rstart",
";",
"if",
"(",
"epos",
">=",
"0",
"&&",
"epos",
"<",
"methBins",
".",
"length",
")",
"{",
"methBins",
"[",
"epos",
"]",
"=",
"1",
";",
"}",
"}",
"}",
"}",
")",
";",
"for",
"(",
"let",
"j",
"=",
"fstart",
";",
"j",
"<",
"fend",
";",
"j",
"++",
")",
"{",
"const",
"i",
"=",
"j",
"-",
"rstart",
";",
"if",
"(",
"i",
">=",
"0",
"&&",
"i",
"<",
"methBins",
".",
"length",
")",
"{",
"const",
"l1",
"=",
"regionSequence",
"[",
"i",
"]",
".",
"toLowerCase",
"(",
")",
";",
"const",
"l2",
"=",
"regionSequence",
"[",
"i",
"+",
"1",
"]",
".",
"toLowerCase",
"(",
")",
";",
"if",
"(",
"bpPerPx",
">",
"2",
")",
"{",
"if",
"(",
"l1",
"===",
"'c'",
"&&",
"l2",
"===",
"'g'",
")",
"{",
"const",
"s",
"=",
"rstart",
"+",
"i",
";",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"s",
",",
"s",
"+",
"2",
",",
"region",
",",
"bpPerPx",
")",
";",
"if",
"(",
"methBins",
"[",
"i",
"]",
"||",
"methBins",
"[",
"i",
"+",
"1",
"]",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"'red'",
";",
"}",
"else",
"{",
"ctx",
".",
"fillStyle",
"=",
"'blue'",
";",
"}",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"rightPx",
"-",
"leftPx",
"+",
"0.5",
",",
"heightPx",
")",
";",
"}",
"}",
"else",
"{",
"if",
"(",
"l1",
"===",
"'c'",
"&&",
"l2",
"===",
"'g'",
")",
"{",
"const",
"s",
"=",
"rstart",
"+",
"i",
";",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"s",
",",
"s",
"+",
"1",
",",
"region",
",",
"bpPerPx",
")",
";",
"if",
"(",
"methBins",
"[",
"i",
"]",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"'red'",
";",
"}",
"else",
"{",
"ctx",
".",
"fillStyle",
"=",
"'blue'",
";",
"}",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"rightPx",
"-",
"leftPx",
"+",
"0.5",
",",
"heightPx",
")",
";",
"const",
"[",
"leftPx2",
",",
"rightPx2",
"]",
"=",
"bpSpanPx",
"(",
"s",
"+",
"1",
",",
"s",
"+",
"2",
",",
"region",
",",
"bpPerPx",
")",
";",
"if",
"(",
"methBins",
"[",
"i",
"+",
"1",
"]",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"'red'",
";",
"}",
"else",
"{",
"ctx",
".",
"fillStyle",
"=",
"'blue'",
";",
"}",
"ctx",
".",
"fillRect",
"(",
"leftPx2",
",",
"topPx",
",",
"rightPx2",
"-",
"leftPx2",
"+",
"0.5",
",",
"heightPx",
")",
";",
"}",
"}",
"}",
"}",
"}",
"drawRect",
"(",
"ctx",
",",
"feat",
",",
"props",
")",
"{",
"const",
"{",
"regions",
",",
"bpPerPx",
"}",
"=",
"props",
";",
"const",
"{",
"heightPx",
",",
"topPx",
",",
"feature",
"}",
"=",
"feat",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"feature",
".",
"get",
"(",
"'start'",
")",
",",
"feature",
".",
"get",
"(",
"'end'",
")",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"flip",
"=",
"region",
".",
"reversed",
"?",
"-",
"1",
":",
"1",
";",
"const",
"strand",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
"*",
"flip",
";",
"if",
"(",
"bpPerPx",
"<",
"10",
")",
"{",
"if",
"(",
"strand",
"===",
"-",
"1",
")",
"{",
"ctx",
".",
"beginPath",
"(",
")",
";",
"ctx",
".",
"moveTo",
"(",
"leftPx",
"-",
"5",
",",
"topPx",
"+",
"heightPx",
"/",
"2",
")",
";",
"ctx",
".",
"lineTo",
"(",
"leftPx",
",",
"topPx",
"+",
"heightPx",
")",
";",
"ctx",
".",
"lineTo",
"(",
"rightPx",
",",
"topPx",
"+",
"heightPx",
")",
";",
"ctx",
".",
"lineTo",
"(",
"rightPx",
",",
"topPx",
")",
";",
"ctx",
".",
"lineTo",
"(",
"leftPx",
",",
"topPx",
")",
";",
"ctx",
".",
"closePath",
"(",
")",
";",
"ctx",
".",
"fill",
"(",
")",
";",
"}",
"else",
"{",
"ctx",
".",
"beginPath",
"(",
")",
";",
"ctx",
".",
"moveTo",
"(",
"leftPx",
",",
"topPx",
")",
";",
"ctx",
".",
"lineTo",
"(",
"leftPx",
",",
"topPx",
"+",
"heightPx",
")",
";",
"ctx",
".",
"lineTo",
"(",
"rightPx",
",",
"topPx",
"+",
"heightPx",
")",
";",
"ctx",
".",
"lineTo",
"(",
"rightPx",
"+",
"5",
",",
"topPx",
"+",
"heightPx",
"/",
"2",
")",
";",
"ctx",
".",
"lineTo",
"(",
"rightPx",
",",
"topPx",
")",
";",
"ctx",
".",
"closePath",
"(",
")",
";",
"ctx",
".",
"fill",
"(",
")",
";",
"}",
"}",
"else",
"{",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"rightPx",
"-",
"leftPx",
",",
"heightPx",
")",
";",
"}",
"}",
"drawAlignmentRect",
"(",
"ctx",
",",
"feat",
",",
"props",
")",
"{",
"const",
"{",
"defaultColor",
",",
"config",
",",
"bpPerPx",
",",
"regions",
",",
"colorBy",
",",
"colorTagMap",
"=",
"{",
"}",
",",
"}",
"=",
"props",
";",
"const",
"{",
"tag",
"=",
"''",
",",
"type",
":",
"colorType",
"=",
"''",
"}",
"=",
"colorBy",
"||",
"{",
"}",
";",
"const",
"{",
"feature",
"}",
"=",
"feat",
";",
"const",
"region",
"=",
"regions",
"[",
"0",
"]",
";",
"switch",
"(",
"colorType",
")",
"{",
"case",
"'insertSize'",
":",
"ctx",
".",
"fillStyle",
"=",
"this",
".",
"colorByInsertSize",
"(",
"feature",
",",
"config",
")",
";",
"break",
";",
"case",
"'strand'",
":",
"ctx",
".",
"fillStyle",
"=",
"feature",
".",
"get",
"(",
"'strand'",
")",
"===",
"-",
"1",
"?",
"'#8F8FD8'",
":",
"'#EC8B8B'",
";",
"break",
";",
"case",
"'mappingQuality'",
":",
"ctx",
".",
"fillStyle",
"=",
"`hsl(${",
"feature",
".",
"get",
"(",
"'mq'",
")",
"},50%,50%)`",
";",
"break",
";",
"case",
"'pairOrientation'",
":",
"ctx",
".",
"fillStyle",
"=",
"this",
".",
"colorByOrientation",
"(",
"feature",
",",
"config",
")",
";",
"break",
";",
"case",
"'stranded'",
":",
"ctx",
".",
"fillStyle",
"=",
"alignmentColoring",
"[",
"this",
".",
"colorByStranded",
"(",
"feature",
",",
"config",
")",
"]",
";",
"break",
";",
"case",
"'xs'",
":",
"case",
"'tag'",
":",
"{",
"const",
"tags",
"=",
"feature",
".",
"get",
"(",
"'tags'",
")",
";",
"const",
"val",
"=",
"tags",
"?",
"tags",
"[",
"tag",
"]",
":",
"feature",
".",
"get",
"(",
"tag",
")",
";",
"if",
"(",
"tag",
"===",
"'XS'",
"||",
"tag",
"===",
"'TS'",
")",
"{",
"const",
"map",
"=",
"{",
"'-'",
":",
"'color_rev_strand'",
",",
"'+'",
":",
"'color_fwd_strand'",
",",
"}",
";",
"ctx",
".",
"fillStyle",
"=",
"alignmentColoring",
"[",
"map",
"[",
"val",
"]",
"||",
"'color_nostrand'",
"]",
";",
"}",
"if",
"(",
"tag",
"===",
"'ts'",
")",
"{",
"const",
"map",
"=",
"{",
"'-'",
":",
"feature",
".",
"get",
"(",
"'strand'",
")",
"===",
"-",
"1",
"?",
"'color_fwd_strand'",
":",
"'color_rev_strand'",
",",
"'+'",
":",
"feature",
".",
"get",
"(",
"'strand'",
")",
"===",
"-",
"1",
"?",
"'color_rev_strand'",
":",
"'color_fwd_strand'",
",",
"}",
";",
"ctx",
".",
"fillStyle",
"=",
"alignmentColoring",
"[",
"map",
"[",
"val",
"]",
"||",
"'color_nostrand'",
"]",
";",
"}",
"else",
"{",
"const",
"foundValue",
"=",
"colorTagMap",
"[",
"val",
"]",
";",
"ctx",
".",
"fillStyle",
"=",
"foundValue",
"||",
"alignmentColoring",
"[",
"'color_nostrand'",
"]",
";",
"}",
"break",
";",
"}",
"case",
"'insertSizeAndPairOrientation'",
":",
"break",
";",
"case",
"'normal'",
":",
"default",
":",
"if",
"(",
"defaultColor",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"'#c8c8c8'",
";",
"}",
"else",
"{",
"ctx",
".",
"fillStyle",
"=",
"readConfObject",
"(",
"config",
",",
"'color'",
",",
"{",
"feature",
"}",
")",
";",
"}",
"break",
";",
"}",
"this",
".",
"drawRect",
"(",
"ctx",
",",
"feat",
",",
"props",
")",
";",
"switch",
"(",
"colorType",
")",
"{",
"case",
"'perBaseQuality'",
":",
"this",
".",
"colorByPerBaseQuality",
"(",
"ctx",
",",
"feat",
",",
"config",
",",
"region",
",",
"bpPerPx",
")",
";",
"break",
";",
"case",
"'modifications'",
":",
"this",
".",
"colorByModifications",
"(",
"ctx",
",",
"feat",
",",
"config",
",",
"region",
",",
"bpPerPx",
",",
"props",
")",
";",
"break",
";",
"case",
"'methylation'",
":",
"this",
".",
"colorByMethylation",
"(",
"ctx",
",",
"feat",
",",
"config",
",",
"region",
",",
"bpPerPx",
",",
"props",
")",
";",
"break",
";",
"}",
"}",
"drawMismatches",
"(",
"ctx",
",",
"feat",
",",
"props",
",",
"theme",
",",
"colorForBase",
",",
"opts",
")",
"{",
"const",
"{",
"minSubfeatureWidth",
":",
"minWidth",
",",
"largeInsertionIndicatorScale",
",",
"mismatchAlpha",
",",
"drawSNPs",
"=",
"true",
",",
"drawIndels",
"=",
"true",
",",
"charWidth",
",",
"charHeight",
",",
"}",
"=",
"opts",
";",
"const",
"{",
"bpPerPx",
",",
"regions",
"}",
"=",
"props",
";",
"const",
"{",
"heightPx",
",",
"topPx",
",",
"feature",
"}",
"=",
"feat",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"const",
"start",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"pxPerBp",
"=",
"Math",
".",
"min",
"(",
"1",
"/",
"bpPerPx",
",",
"2",
")",
";",
"const",
"w",
"=",
"Math",
".",
"max",
"(",
"minWidth",
",",
"pxPerBp",
")",
";",
"const",
"mismatches",
"=",
"feature",
".",
"get",
"(",
"'mismatches'",
")",
";",
"const",
"heightLim",
"=",
"charHeight",
"-",
"2",
";",
"function",
"getAlphaColor",
"(",
"baseColor",
",",
"mismatch",
")",
"{",
"let",
"color",
"=",
"baseColor",
";",
"if",
"(",
"mismatchAlpha",
"&&",
"mismatch",
".",
"qual",
"!==",
"undefined",
")",
"{",
"color",
"=",
"Color",
"(",
"baseColor",
")",
".",
"alpha",
"(",
"Math",
".",
"min",
"(",
"1",
",",
"mismatch",
".",
"qual",
"/",
"50",
")",
")",
".",
"hsl",
"(",
")",
".",
"string",
"(",
")",
";",
"}",
"return",
"color",
";",
"}",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"mismatches",
".",
"length",
";",
"i",
"+=",
"1",
")",
"{",
"const",
"mismatch",
"=",
"mismatches",
"[",
"i",
"]",
";",
"const",
"mstart",
"=",
"start",
"+",
"mismatch",
".",
"start",
";",
"const",
"mlen",
"=",
"mismatch",
".",
"length",
";",
"const",
"mbase",
"=",
"mismatch",
".",
"base",
";",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"mstart",
",",
"mstart",
"+",
"mlen",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"widthPx",
"=",
"Math",
".",
"max",
"(",
"minWidth",
",",
"Math",
".",
"abs",
"(",
"leftPx",
"-",
"rightPx",
")",
")",
";",
"if",
"(",
"mismatch",
".",
"type",
"===",
"'mismatch'",
"&&",
"drawSNPs",
")",
"{",
"const",
"baseColor",
"=",
"colorForBase",
"[",
"mismatch",
".",
"base",
"]",
"||",
"'#888'",
";",
"ctx",
".",
"fillStyle",
"=",
"getAlphaColor",
"(",
"baseColor",
",",
"mismatch",
")",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"widthPx",
",",
"heightPx",
")",
";",
"if",
"(",
"widthPx",
">=",
"charWidth",
"&&",
"heightPx",
">=",
"heightLim",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"getAlphaColor",
"(",
"theme",
".",
"palette",
".",
"getContrastText",
"(",
"baseColor",
")",
",",
"mismatch",
")",
";",
"ctx",
".",
"fillText",
"(",
"mbase",
",",
"leftPx",
"+",
"(",
"widthPx",
"-",
"charWidth",
")",
"/",
"2",
"+",
"1",
",",
"topPx",
"+",
"heightPx",
")",
";",
"}",
"}",
"else",
"if",
"(",
"mismatch",
".",
"type",
"===",
"'deletion'",
"&&",
"drawIndels",
")",
"{",
"const",
"baseColor",
"=",
"colorForBase",
".",
"deletion",
";",
"ctx",
".",
"fillStyle",
"=",
"baseColor",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
",",
"widthPx",
",",
"heightPx",
")",
";",
"if",
"(",
"widthPx",
">=",
"charWidth",
"&&",
"heightPx",
">=",
"heightLim",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"theme",
".",
"palette",
".",
"getContrastText",
"(",
"baseColor",
")",
";",
"ctx",
".",
"fillText",
"(",
"mbase",
",",
"leftPx",
"+",
"(",
"widthPx",
"-",
"charWidth",
")",
"/",
"2",
"+",
"1",
",",
"topPx",
"+",
"heightPx",
")",
";",
"}",
"}",
"else",
"if",
"(",
"mismatch",
".",
"type",
"===",
"'insertion'",
"&&",
"drawIndels",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"'purple'",
";",
"const",
"pos",
"=",
"leftPx",
"-",
"1",
";",
"const",
"len",
"=",
"+",
"mismatch",
".",
"base",
"||",
"mismatch",
".",
"length",
";",
"if",
"(",
"len",
"<",
"10",
")",
"{",
"ctx",
".",
"fillRect",
"(",
"pos",
",",
"topPx",
",",
"w",
",",
"heightPx",
")",
";",
"if",
"(",
"1",
"/",
"bpPerPx",
">=",
"charWidth",
")",
"{",
"ctx",
".",
"fillRect",
"(",
"pos",
"-",
"w",
",",
"topPx",
",",
"w",
"*",
"3",
",",
"1",
")",
";",
"ctx",
".",
"fillRect",
"(",
"pos",
"-",
"w",
",",
"topPx",
"+",
"heightPx",
"-",
"1",
",",
"w",
"*",
"3",
",",
"1",
")",
";",
"}",
"if",
"(",
"1",
"/",
"bpPerPx",
">=",
"charWidth",
"&&",
"heightPx",
">=",
"heightLim",
")",
"{",
"ctx",
".",
"fillText",
"(",
"`(${",
"mismatch",
".",
"base",
"})`",
",",
"leftPx",
"+",
"2",
",",
"topPx",
"+",
"heightPx",
")",
";",
"}",
"}",
"}",
"else",
"if",
"(",
"mismatch",
".",
"type",
"===",
"'hardclip'",
"||",
"mismatch",
".",
"type",
"===",
"'softclip'",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"mismatch",
".",
"type",
"===",
"'hardclip'",
"?",
"'red'",
":",
"'blue'",
";",
"const",
"pos",
"=",
"leftPx",
"-",
"1",
";",
"ctx",
".",
"fillRect",
"(",
"pos",
",",
"topPx",
"+",
"1",
",",
"w",
",",
"heightPx",
"-",
"2",
")",
";",
"ctx",
".",
"fillRect",
"(",
"pos",
"-",
"w",
",",
"topPx",
",",
"w",
"*",
"3",
",",
"1",
")",
";",
"ctx",
".",
"fillRect",
"(",
"pos",
"-",
"w",
",",
"topPx",
"+",
"heightPx",
"-",
"1",
",",
"w",
"*",
"3",
",",
"1",
")",
";",
"if",
"(",
"widthPx",
">=",
"charWidth",
"&&",
"heightPx",
">=",
"heightLim",
")",
"{",
"ctx",
".",
"fillText",
"(",
"`(${",
"mismatch",
".",
"base",
"})`",
",",
"leftPx",
"+",
"2",
",",
"topPx",
"+",
"heightPx",
")",
";",
"}",
"}",
"else",
"if",
"(",
"mismatch",
".",
"type",
"===",
"'skip'",
")",
"{",
"if",
"(",
"leftPx",
"+",
"widthPx",
">",
"0",
")",
"{",
"ctx",
".",
"clearRect",
"(",
"leftPx",
",",
"topPx",
",",
"widthPx",
"-",
"(",
"bpPerPx",
">",
"10",
"?",
"1.5",
":",
"0",
")",
",",
"heightPx",
")",
";",
"}",
"ctx",
".",
"fillStyle",
"=",
"'#333'",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"topPx",
"+",
"heightPx",
"/",
"2",
",",
"widthPx",
",",
"2",
")",
";",
"}",
"}",
"if",
"(",
"drawIndels",
")",
"{",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"mismatches",
".",
"length",
";",
"i",
"+=",
"1",
")",
"{",
"const",
"mismatch",
"=",
"mismatches",
"[",
"i",
"]",
";",
"const",
"mstart",
"=",
"start",
"+",
"mismatch",
".",
"start",
";",
"const",
"mlen",
"=",
"mismatch",
".",
"length",
";",
"const",
"[",
"leftPx",
"]",
"=",
"bpSpanPx",
"(",
"mstart",
",",
"mstart",
"+",
"mlen",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"len",
"=",
"+",
"mismatch",
".",
"base",
"||",
"mismatch",
".",
"length",
";",
"const",
"txt",
"=",
"`${",
"len",
"}`",
";",
"if",
"(",
"mismatch",
".",
"type",
"===",
"'insertion'",
"&&",
"len",
">=",
"10",
")",
"{",
"if",
"(",
"bpPerPx",
">",
"largeInsertionIndicatorScale",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"'purple'",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
"-",
"1",
",",
"topPx",
",",
"2",
",",
"heightPx",
")",
";",
"}",
"else",
"if",
"(",
"heightPx",
">",
"charHeight",
")",
"{",
"const",
"rect",
"=",
"ctx",
".",
"measureText",
"(",
"txt",
")",
";",
"const",
"padding",
"=",
"5",
";",
"ctx",
".",
"fillStyle",
"=",
"'purple'",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
"-",
"rect",
".",
"width",
"/",
"2",
"-",
"padding",
",",
"topPx",
",",
"rect",
".",
"width",
"+",
"2",
"*",
"padding",
",",
"heightPx",
")",
";",
"ctx",
".",
"fillStyle",
"=",
"'white'",
";",
"ctx",
".",
"fillText",
"(",
"txt",
",",
"leftPx",
"-",
"rect",
".",
"width",
"/",
"2",
",",
"topPx",
"+",
"heightPx",
")",
";",
"}",
"else",
"{",
"const",
"padding",
"=",
"2",
";",
"ctx",
".",
"fillStyle",
"=",
"'purple'",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
"-",
"padding",
",",
"topPx",
",",
"2",
"*",
"padding",
",",
"heightPx",
")",
";",
"}",
"}",
"}",
"}",
"}",
"drawSoftClipping",
"(",
"ctx",
",",
"feat",
",",
"props",
",",
"config",
",",
"theme",
")",
"{",
"const",
"{",
"feature",
",",
"topPx",
",",
"heightPx",
"}",
"=",
"feat",
";",
"const",
"{",
"regions",
",",
"bpPerPx",
"}",
"=",
"props",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"const",
"minFeatWidth",
"=",
"readConfObject",
"(",
"config",
",",
"'minSubfeatureWidth'",
")",
";",
"const",
"mismatches",
"=",
"feature",
".",
"get",
"(",
"'mismatches'",
")",
";",
"const",
"seq",
"=",
"feature",
".",
"get",
"(",
"'seq'",
")",
";",
"const",
"{",
"charWidth",
",",
"charHeight",
"}",
"=",
"this",
".",
"getCharWidthHeight",
"(",
"ctx",
")",
";",
"const",
"colorForBase",
"=",
"{",
"A",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"A",
".",
"main",
",",
"C",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"C",
".",
"main",
",",
"G",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"G",
".",
"main",
",",
"T",
":",
"theme",
".",
"palette",
".",
"bases",
".",
"T",
".",
"main",
",",
"deletion",
":",
"'#808080'",
",",
"}",
";",
"if",
"(",
"seq",
")",
"{",
"mismatches",
".",
"filter",
"(",
"mismatch",
"=>",
"mismatch",
".",
"type",
"===",
"'softclip'",
")",
".",
"forEach",
"(",
"mismatch",
"=>",
"{",
"const",
"softClipLength",
"=",
"mismatch",
".",
"cliplen",
"||",
"0",
";",
"const",
"softClipStart",
"=",
"mismatch",
".",
"start",
"===",
"0",
"?",
"feature",
".",
"get",
"(",
"'start'",
")",
"-",
"softClipLength",
":",
"feature",
".",
"get",
"(",
"'start'",
")",
"+",
"mismatch",
".",
"start",
";",
"for",
"(",
"let",
"k",
"=",
"0",
";",
"k",
"<",
"softClipLength",
";",
"k",
"+=",
"1",
")",
"{",
"const",
"base",
"=",
"seq",
".",
"charAt",
"(",
"k",
"+",
"mismatch",
".",
"start",
")",
";",
"if",
"(",
"!",
"base",
")",
"{",
"return",
";",
"}",
"const",
"[",
"softClipLeftPx",
",",
"softClipRightPx",
"]",
"=",
"bpSpanPx",
"(",
"softClipStart",
"+",
"k",
",",
"softClipStart",
"+",
"k",
"+",
"1",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"softClipWidthPx",
"=",
"Math",
".",
"max",
"(",
"minFeatWidth",
",",
"Math",
".",
"abs",
"(",
"softClipLeftPx",
"-",
"softClipRightPx",
")",
")",
";",
"const",
"baseColor",
"=",
"colorForBase",
"[",
"base",
"]",
"||",
"'#000000'",
";",
"ctx",
".",
"fillStyle",
"=",
"baseColor",
";",
"ctx",
".",
"fillRect",
"(",
"softClipLeftPx",
",",
"topPx",
",",
"softClipWidthPx",
",",
"heightPx",
")",
";",
"if",
"(",
"softClipWidthPx",
">=",
"charWidth",
"&&",
"heightPx",
">=",
"charHeight",
"-",
"5",
")",
"{",
"ctx",
".",
"fillStyle",
"=",
"theme",
".",
"palette",
".",
"getContrastText",
"(",
"baseColor",
")",
";",
"ctx",
".",
"fillText",
"(",
"base",
",",
"softClipLeftPx",
"+",
"(",
"softClipWidthPx",
"-",
"charWidth",
")",
"/",
"2",
"+",
"1",
",",
"topPx",
"+",
"heightPx",
")",
";",
"}",
"}",
"}",
")",
";",
"}",
"}",
"async",
"makeImageData",
"(",
"ctx",
",",
"layoutRecords",
",",
"props",
")",
"{",
"const",
"{",
"layout",
",",
"config",
",",
"showSoftClip",
",",
"colorBy",
",",
"theme",
":",
"configTheme",
"}",
"=",
"props",
";",
"const",
"mismatchAlpha",
"=",
"readConfObject",
"(",
"config",
",",
"'mismatchAlpha'",
")",
";",
"const",
"minSubfeatureWidth",
"=",
"readConfObject",
"(",
"config",
",",
"'minSubfeatureWidth'",
")",
";",
"const",
"insertScale",
"=",
"readConfObject",
"(",
"config",
",",
"'largeInsertionIndicatorScale'",
")",
";",
"const",
"defaultColor",
"=",
"readConfObject",
"(",
"config",
",",
"'color'",
")",
"===",
"'#f0f'",
";",
"const",
"theme",
"=",
"createJBrowseTheme",
"(",
"configTheme",
")",
";",
"const",
"colorForBase",
"=",
"getColorBaseMap",
"(",
"theme",
")",
";",
"if",
"(",
"!",
"layout",
")",
"{",
"throw",
"new",
"Error",
"(",
"`layout required`",
")",
";",
"}",
"if",
"(",
"!",
"layout",
".",
"addRect",
")",
"{",
"throw",
"new",
"Error",
"(",
"'invalid layout object'",
")",
";",
"}",
"ctx",
".",
"font",
"=",
"'bold 10px Courier New,monospace'",
";",
"const",
"{",
"charWidth",
",",
"charHeight",
"}",
"=",
"this",
".",
"getCharWidthHeight",
"(",
"ctx",
")",
";",
"layoutRecords",
".",
"forEach",
"(",
"feat",
"=>",
"{",
"if",
"(",
"feat",
"===",
"null",
")",
"{",
"return",
";",
"}",
"this",
".",
"drawAlignmentRect",
"(",
"ctx",
",",
"feat",
",",
"{",
"...",
"props",
",",
"defaultColor",
",",
"}",
")",
";",
"this",
".",
"drawMismatches",
"(",
"ctx",
",",
"feat",
",",
"props",
",",
"theme",
",",
"colorForBase",
",",
"{",
"mismatchAlpha",
",",
"drawSNPs",
":",
"shouldDrawMismatches",
"(",
"colorBy",
"?.",
"type",
")",
",",
"drawIndels",
":",
"shouldDrawMismatches",
"(",
"colorBy",
"?.",
"type",
")",
",",
"largeInsertionIndicatorScale",
":",
"insertScale",
",",
"minSubfeatureWidth",
",",
"charWidth",
",",
"charHeight",
",",
"}",
")",
";",
"if",
"(",
"showSoftClip",
")",
"{",
"this",
".",
"drawSoftClipping",
"(",
"ctx",
",",
"feat",
",",
"props",
",",
"config",
",",
"theme",
")",
";",
"}",
"}",
")",
";",
"}",
"layoutFeats",
"(",
"props",
")",
"{",
"const",
"{",
"layout",
",",
"features",
",",
"sortedBy",
",",
"config",
",",
"bpPerPx",
",",
"showSoftClip",
",",
"regions",
",",
"}",
"=",
"props",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"if",
"(",
"!",
"layout",
")",
"{",
"throw",
"new",
"Error",
"(",
"`layout required`",
")",
";",
"}",
"if",
"(",
"!",
"layout",
".",
"addRect",
")",
"{",
"throw",
"new",
"Error",
"(",
"'invalid layout object'",
")",
";",
"}",
"const",
"featureMap",
"=",
"sortedBy",
"?.",
"type",
"&&",
"region",
".",
"start",
"===",
"sortedBy",
".",
"pos",
"?",
"sortFeature",
"(",
"features",
",",
"sortedBy",
")",
":",
"features",
";",
"const",
"heightPx",
"=",
"readConfObject",
"(",
"config",
",",
"'height'",
")",
";",
"const",
"displayMode",
"=",
"readConfObject",
"(",
"config",
",",
"'displayMode'",
")",
";",
"const",
"layoutRecords",
"=",
"iterMap",
"(",
"featureMap",
".",
"values",
"(",
")",
",",
"feature",
"=>",
"this",
".",
"layoutFeature",
"(",
"{",
"feature",
",",
"layout",
",",
"bpPerPx",
",",
"region",
",",
"showSoftClip",
",",
"heightPx",
",",
"displayMode",
",",
"}",
")",
",",
"featureMap",
".",
"size",
")",
";",
"return",
"layoutRecords",
";",
"}",
"async",
"render",
"(",
"renderProps",
")",
"{",
"const",
"{",
"sessionId",
",",
"bpPerPx",
",",
"regions",
",",
"adapterConfig",
"}",
"=",
"renderProps",
";",
"const",
"{",
"sequenceAdapter",
"}",
"=",
"adapterConfig",
";",
"const",
"features",
"=",
"await",
"this",
".",
"getFeatures",
"(",
"renderProps",
")",
";",
"const",
"layout",
"=",
"this",
".",
"createLayoutInWorker",
"(",
"renderProps",
")",
";",
"const",
"layoutRecords",
"=",
"this",
".",
"layoutFeats",
"(",
"{",
"...",
"renderProps",
",",
"features",
",",
"layout",
"}",
")",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"let",
"regionSequence",
";",
"const",
"{",
"end",
",",
"start",
",",
"originalRefName",
",",
"refName",
"}",
"=",
"region",
";",
"if",
"(",
"sequenceAdapter",
")",
"{",
"const",
"{",
"dataAdapter",
"}",
"=",
"await",
"getAdapter",
"(",
"this",
".",
"pluginManager",
",",
"sessionId",
",",
"sequenceAdapter",
")",
";",
"const",
"feats",
"=",
"await",
"(",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
")",
".",
"getFeatures",
"(",
"{",
"...",
"region",
",",
"refName",
":",
"originalRefName",
"||",
"refName",
",",
"end",
":",
"region",
".",
"end",
"+",
"1",
",",
"}",
")",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"regionSequence",
"=",
"feats",
"[",
"0",
"]",
"?.",
"get",
"(",
"'seq'",
")",
";",
"}",
"const",
"width",
"=",
"(",
"end",
"-",
"start",
")",
"/",
"bpPerPx",
";",
"const",
"height",
"=",
"Math",
".",
"max",
"(",
"layout",
".",
"getTotalHeight",
"(",
")",
",",
"1",
")",
";",
"const",
"res",
"=",
"await",
"renderToAbstractCanvas",
"(",
"width",
",",
"height",
",",
"renderProps",
",",
"(",
"ctx",
")",
"=>",
"this",
".",
"makeImageData",
"(",
"ctx",
",",
"layoutRecords",
",",
"{",
"...",
"renderProps",
",",
"layout",
",",
"features",
",",
"regionSequence",
",",
"}",
")",
")",
";",
"const",
"results",
"=",
"await",
"super",
".",
"render",
"(",
"{",
"...",
"renderProps",
",",
"...",
"res",
",",
"features",
",",
"layout",
",",
"height",
",",
"width",
",",
"}",
")",
";",
"return",
"{",
"...",
"results",
",",
"...",
"res",
",",
"features",
",",
"layout",
",",
"height",
",",
"width",
",",
"maxHeightReached",
":",
"layout",
".",
"maxHeightReached",
",",
"}",
";",
"}",
"createSession",
"(",
"args",
")",
"{",
"return",
"new",
"PileupLayoutSession",
"(",
"args",
")",
";",
"}",
"}",
"export",
"type",
"{",
"RenderArgs",
",",
"RenderArgsSerialized",
",",
"RenderResults",
",",
"ResultsSerialized",
",",
"ResultsDeserialized",
",",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
73,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
115,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660141 | [
"import",
"{",
"Region",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"{",
"PrerenderedCanvas",
"}",
"from",
"'@jbrowse/core/ui'",
";",
"import",
"{",
"bpSpanPx",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"React",
",",
"{",
"MouseEvent",
",",
"useRef",
",",
"useState",
",",
"useEffect",
"}",
"from",
"'react'",
";",
"import",
"type",
"{",
"BaseLinearDisplayModel",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"const",
"canvasPadding",
"=",
"100",
";",
"function",
"PileupRendering",
"(",
"props",
")",
"{",
"const",
"{",
"onMouseMove",
",",
"blockKey",
",",
"displayModel",
",",
"width",
",",
"height",
",",
"regions",
",",
"bpPerPx",
",",
"sortedBy",
",",
"colorBy",
",",
"}",
"=",
"props",
";",
"const",
"{",
"selectedFeatureId",
",",
"featureIdUnderMouse",
",",
"contextMenuFeature",
"}",
"=",
"displayModel",
";",
"const",
"[",
"region",
"]",
"=",
"regions",
";",
"const",
"highlightOverlayCanvas",
"=",
"useRef",
"<",
"HTMLCanvasElement",
">",
"(",
"null",
")",
";",
"const",
"[",
"mouseIsDown",
",",
"setMouseIsDown",
"]",
"=",
"useState",
"(",
"false",
")",
";",
"const",
"[",
"movedDuringLastMouseDown",
",",
"setMovedDuringLastMouseDown",
"]",
"=",
"useState",
"(",
"false",
")",
";",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"const",
"canvas",
"=",
"highlightOverlayCanvas",
".",
"current",
";",
"if",
"(",
"!",
"canvas",
")",
"{",
"return",
";",
"}",
"const",
"ctx",
"=",
"canvas",
".",
"getContext",
"(",
"'2d'",
")",
";",
"if",
"(",
"!",
"ctx",
")",
"{",
"return",
";",
"}",
"ctx",
".",
"clearRect",
"(",
"0",
",",
"0",
",",
"canvas",
".",
"width",
",",
"canvas",
".",
"height",
")",
";",
"const",
"selectedRect",
"=",
"selectedFeatureId",
"?",
"displayModel",
".",
"getFeatureByID",
"?.",
"(",
"blockKey",
",",
"selectedFeatureId",
")",
":",
"undefined",
";",
"if",
"(",
"selectedRect",
")",
"{",
"const",
"[",
"leftBp",
",",
"topPx",
",",
"rightBp",
",",
"bottomPx",
"]",
"=",
"selectedRect",
";",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"leftBp",
",",
"rightBp",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"rectTop",
"=",
"Math",
".",
"round",
"(",
"topPx",
")",
";",
"const",
"rectHeight",
"=",
"Math",
".",
"round",
"(",
"bottomPx",
"-",
"topPx",
")",
";",
"ctx",
".",
"shadowColor",
"=",
"'#222266'",
";",
"ctx",
".",
"shadowBlur",
"=",
"10",
";",
"ctx",
".",
"lineJoin",
"=",
"'bevel'",
";",
"ctx",
".",
"lineWidth",
"=",
"2",
";",
"ctx",
".",
"strokeStyle",
"=",
"'#00b8ff'",
";",
"ctx",
".",
"strokeRect",
"(",
"leftPx",
"-",
"2",
",",
"rectTop",
"-",
"2",
",",
"rightPx",
"-",
"leftPx",
"+",
"4",
",",
"rectHeight",
"+",
"4",
")",
";",
"ctx",
".",
"clearRect",
"(",
"leftPx",
",",
"rectTop",
",",
"rightPx",
"-",
"leftPx",
",",
"rectHeight",
")",
";",
"}",
"const",
"highlightedFeature",
"=",
"featureIdUnderMouse",
"||",
"contextMenuFeature",
"?.",
"id",
"(",
")",
";",
"const",
"highlightedRect",
"=",
"highlightedFeature",
"?",
"displayModel",
".",
"getFeatureByID",
"?.",
"(",
"blockKey",
",",
"highlightedFeature",
")",
":",
"undefined",
";",
"if",
"(",
"highlightedRect",
")",
"{",
"const",
"[",
"leftBp",
",",
"topPx",
",",
"rightBp",
",",
"bottomPx",
"]",
"=",
"highlightedRect",
";",
"const",
"[",
"leftPx",
",",
"rightPx",
"]",
"=",
"bpSpanPx",
"(",
"leftBp",
",",
"rightBp",
",",
"region",
",",
"bpPerPx",
")",
";",
"const",
"rectTop",
"=",
"Math",
".",
"round",
"(",
"topPx",
")",
";",
"const",
"rectHeight",
"=",
"Math",
".",
"round",
"(",
"bottomPx",
"-",
"topPx",
")",
";",
"ctx",
".",
"fillStyle",
"=",
"'#0003'",
";",
"ctx",
".",
"fillRect",
"(",
"leftPx",
",",
"rectTop",
",",
"rightPx",
"-",
"leftPx",
",",
"rectHeight",
")",
";",
"}",
"}",
",",
"[",
"bpPerPx",
",",
"region",
",",
"blockKey",
",",
"selectedFeatureId",
",",
"displayModel",
",",
"featureIdUnderMouse",
",",
"contextMenuFeature",
",",
"]",
")",
";",
"function",
"onMouseDown",
"(",
"event",
")",
"{",
"setMouseIsDown",
"(",
"true",
")",
";",
"setMovedDuringLastMouseDown",
"(",
"false",
")",
";",
"callMouseHandler",
"(",
"'MouseDown'",
",",
"event",
")",
";",
"}",
"function",
"onMouseEnter",
"(",
"event",
")",
"{",
"callMouseHandler",
"(",
"'MouseEnter'",
",",
"event",
")",
";",
"}",
"function",
"onMouseOut",
"(",
"event",
")",
"{",
"callMouseHandler",
"(",
"'MouseOut'",
",",
"event",
")",
";",
"callMouseHandler",
"(",
"'MouseLeave'",
",",
"event",
")",
";",
"}",
"function",
"onMouseOver",
"(",
"event",
")",
"{",
"callMouseHandler",
"(",
"'MouseOver'",
",",
"event",
")",
";",
"}",
"function",
"onMouseUp",
"(",
"event",
")",
"{",
"setMouseIsDown",
"(",
"false",
")",
";",
"callMouseHandler",
"(",
"'MouseUp'",
",",
"event",
")",
";",
"}",
"function",
"onClick",
"(",
"event",
")",
"{",
"if",
"(",
"!",
"movedDuringLastMouseDown",
")",
"{",
"callMouseHandler",
"(",
"'Click'",
",",
"event",
")",
";",
"}",
"}",
"function",
"onMouseLeave",
"(",
"event",
")",
"{",
"callMouseHandler",
"(",
"'MouseOut'",
",",
"event",
")",
";",
"callMouseHandler",
"(",
"'MouseLeave'",
",",
"event",
")",
";",
"}",
"function",
"onContextMenu",
"(",
"event",
")",
"{",
"callMouseHandler",
"(",
"'ContextMenu'",
",",
"event",
")",
";",
"}",
"function",
"mouseMove",
"(",
"event",
")",
"{",
"if",
"(",
"mouseIsDown",
")",
"{",
"setMovedDuringLastMouseDown",
"(",
"true",
")",
";",
"}",
"let",
"offsetX",
"=",
"0",
";",
"let",
"offsetY",
"=",
"0",
";",
"if",
"(",
"highlightOverlayCanvas",
".",
"current",
")",
"{",
"offsetX",
"=",
"highlightOverlayCanvas",
".",
"current",
".",
"getBoundingClientRect",
"(",
")",
".",
"left",
";",
"offsetY",
"=",
"highlightOverlayCanvas",
".",
"current",
".",
"getBoundingClientRect",
"(",
")",
".",
"top",
";",
"}",
"offsetX",
"=",
"event",
".",
"clientX",
"-",
"offsetX",
";",
"offsetY",
"=",
"event",
".",
"clientY",
"-",
"offsetY",
";",
"const",
"px",
"=",
"region",
".",
"reversed",
"?",
"width",
"-",
"offsetX",
":",
"offsetX",
";",
"const",
"clientBp",
"=",
"region",
".",
"start",
"+",
"bpPerPx",
"*",
"px",
";",
"const",
"featIdUnderMouse",
"=",
"displayModel",
".",
"getFeatureOverlapping",
"(",
"blockKey",
",",
"clientBp",
",",
"offsetY",
")",
";",
"if",
"(",
"onMouseMove",
")",
"{",
"onMouseMove",
"(",
"event",
",",
"featIdUnderMouse",
")",
";",
"}",
"}",
"function",
"callMouseHandler",
"(",
"handlerName",
",",
"event",
")",
"{",
"const",
"featureHandler",
"=",
"props",
"[",
"`onFeature${",
"handlerName",
"}`",
"]",
";",
"const",
"canvasHandler",
"=",
"props",
"[",
"`on${",
"handlerName",
"}`",
"]",
";",
"if",
"(",
"featureHandler",
"&&",
"featureIdUnderMouse",
")",
"{",
"featureHandler",
"(",
"event",
",",
"featureIdUnderMouse",
")",
";",
"}",
"else",
"if",
"(",
"canvasHandler",
")",
"{",
"canvasHandler",
"(",
"event",
",",
"featureIdUnderMouse",
")",
";",
"}",
"}",
"const",
"canvasWidth",
"=",
"Math",
".",
"ceil",
"(",
"width",
")",
";",
"return",
"(",
"<",
"div",
"className",
"=",
"\"PileupRendering\"",
"data",
"-",
"testid",
"=",
"{",
"`pileup-${",
"sortedBy",
"||",
"colorBy",
"?",
"`${",
"sortedBy",
"?.",
"type",
"||",
"''",
"}${",
"colorBy",
"?.",
"type",
"||",
"''",
"}${",
"colorBy",
"?.",
"tag",
"||",
"''",
"}`",
":",
"'normal'",
"}`",
"}",
"style",
"=",
"{",
"{",
"position",
":",
"'relative'",
",",
"width",
":",
"canvasWidth",
",",
"height",
"}",
"}",
">",
"<",
"PrerenderedCanvas",
"{",
"...",
"props",
"}",
"style",
"=",
"{",
"{",
"position",
":",
"'absolute'",
",",
"left",
":",
"0",
",",
"top",
":",
"0",
"}",
"}",
"/>",
"<",
"canvas",
"data",
"-",
"testid",
"=",
"\"pileup_overlay_canvas\"",
"width",
"=",
"{",
"canvasWidth",
"}",
"height",
"=",
"{",
"height",
"+",
"canvasPadding",
"}",
"style",
"=",
"{",
"{",
"position",
":",
"'absolute'",
",",
"left",
":",
"0",
",",
"top",
":",
"0",
"}",
"}",
"className",
"=",
"\"highlightOverlayCanvas\"",
"ref",
"=",
"{",
"highlightOverlayCanvas",
"}",
"onMouseDown",
"=",
"{",
"event",
"=>",
"onMouseDown",
"(",
"event",
")",
"}",
"onMouseEnter",
"=",
"{",
"event",
"=>",
"onMouseEnter",
"(",
"event",
")",
"}",
"onMouseOut",
"=",
"{",
"event",
"=>",
"onMouseOut",
"(",
"event",
")",
"}",
"onMouseOver",
"=",
"{",
"event",
"=>",
"onMouseOver",
"(",
"event",
")",
"}",
"onMouseUp",
"=",
"{",
"event",
"=>",
"onMouseUp",
"(",
"event",
")",
"}",
"onMouseLeave",
"=",
"{",
"event",
"=>",
"onMouseLeave",
"(",
"event",
")",
"}",
"onMouseMove",
"=",
"{",
"event",
"=>",
"mouseMove",
"(",
"event",
")",
"}",
"onClick",
"=",
"{",
"event",
"=>",
"onClick",
"(",
"event",
")",
"}",
"onContextMenu",
"=",
"{",
"event",
"=>",
"onContextMenu",
"(",
"event",
")",
"}",
"onFocus",
"=",
"{",
"(",
")",
"=>",
"{",
"}",
"}",
"onBlur",
"=",
"{",
"(",
")",
"=>",
"{",
"}",
"}",
"/>",
"<",
"/div>);",
"}",
"export",
"default",
"observer",
"(",
"PileupRendering",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
9,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
139,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
115,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
2,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660142 | [
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"PileupRenderer",
"from",
"'./PileupRenderer'",
";",
"import",
"ReactComponent",
"from",
"'./components/PileupRendering'",
";",
"import",
"configSchema",
"from",
"'./configSchema'",
";",
"export",
"default",
"function",
"register",
"(",
"pluginManager",
")",
"{",
"pluginManager",
".",
"addRendererType",
"(",
"(",
")",
"=>",
"new",
"PileupRenderer",
"(",
"{",
"name",
":",
"'PileupRenderer'",
",",
"ReactComponent",
",",
"configSchema",
",",
"pluginManager",
",",
"}",
")",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660143 | [
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"baseLinearDisplayConfigSchema",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"const",
"configModelFactory",
"=",
"(",
"pluginManager",
")",
"=>",
"{",
"const",
"PileupDisplayConfigSchema",
"=",
"pluginManager",
".",
"getDisplayType",
"(",
"'LinearPileupDisplay'",
")",
".",
"configSchema",
";",
"const",
"SNPCoverageDisplayConfigSchema",
"=",
"pluginManager",
".",
"getDisplayType",
"(",
"'LinearSNPCoverageDisplay'",
")",
".",
"configSchema",
";",
"return",
"ConfigurationSchema",
"(",
"'LinearAlignmentsDisplay'",
",",
"{",
"pileupDisplay",
":",
"PileupDisplayConfigSchema",
",",
"snpCoverageDisplay",
":",
"SNPCoverageDisplayConfigSchema",
",",
"}",
",",
"{",
"baseConfiguration",
":",
"baseLinearDisplayConfigSchema",
",",
"explicitlyTyped",
":",
"true",
"}",
")",
";",
"}",
";",
"export",
"type",
"AlignmentsConfigModel",
"=",
"ReturnType",
"<",
"typeof",
"configModelFactory",
">",
";",
"export",
"default",
"configModelFactory",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660144 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"ConfigurationReference",
",",
"getConf",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"AnyConfigurationModel",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"import",
"{",
"BaseDisplay",
"}",
"from",
"'@jbrowse/core/pluggableElementTypes/models'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"MenuItem",
"}",
"from",
"'@jbrowse/core/ui'",
";",
"import",
"deepEqual",
"from",
"'fast-deep-equal'",
";",
"import",
"{",
"autorun",
",",
"when",
"}",
"from",
"'mobx'",
";",
"import",
"{",
"addDisposer",
",",
"getSnapshot",
",",
"Instance",
",",
"types",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"{",
"getContainingTrack",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"AlignmentsConfigModel",
"}",
"from",
"'./configSchema'",
";",
"const",
"minDisplayHeight",
"=",
"20",
";",
"const",
"stateModelFactory",
"=",
"(",
"pluginManager",
",",
"configSchema",
")",
"=>",
"{",
"return",
"types",
".",
"compose",
"(",
"'LinearAlignmentsDisplay'",
",",
"BaseDisplay",
",",
"types",
".",
"model",
"(",
"{",
"PileupDisplay",
":",
"types",
".",
"maybe",
"(",
"pluginManager",
".",
"getDisplayType",
"(",
"'LinearPileupDisplay'",
")",
".",
"stateModel",
")",
",",
"SNPCoverageDisplay",
":",
"types",
".",
"maybe",
"(",
"pluginManager",
".",
"getDisplayType",
"(",
"'LinearSNPCoverageDisplay'",
")",
".",
"stateModel",
")",
",",
"snpCovHeight",
":",
"45",
",",
"type",
":",
"types",
".",
"literal",
"(",
"'LinearAlignmentsDisplay'",
")",
",",
"configuration",
":",
"ConfigurationReference",
"(",
"configSchema",
")",
",",
"height",
":",
"250",
",",
"showCoverage",
":",
"true",
",",
"showPileup",
":",
"true",
",",
"}",
")",
")",
".",
"volatile",
"(",
"(",
")",
"=>",
"(",
"{",
"scrollTop",
":",
"0",
",",
"}",
")",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"toggleCoverage",
"(",
")",
"{",
"self",
".",
"showCoverage",
"=",
"!",
"self",
".",
"showCoverage",
";",
"}",
",",
"togglePileup",
"(",
")",
"{",
"self",
".",
"showPileup",
"=",
"!",
"self",
".",
"showPileup",
";",
"}",
",",
"setScrollTop",
"(",
"scrollTop",
")",
"{",
"self",
".",
"scrollTop",
"=",
"scrollTop",
";",
"}",
",",
"setSNPCoverageHeight",
"(",
"n",
")",
"{",
"self",
".",
"snpCovHeight",
"=",
"n",
";",
"}",
",",
"}",
")",
")",
".",
"views",
"(",
"self",
"=>",
"{",
"const",
"{",
"trackMenuItems",
":",
"superTrackMenuItems",
"}",
"=",
"self",
";",
"return",
"{",
"get",
"pileupDisplayConfig",
"(",
")",
"{",
"const",
"conf",
"=",
"getConf",
"(",
"self",
",",
"'pileupDisplay'",
")",
";",
"const",
"track",
"=",
"getContainingTrack",
"(",
"self",
")",
";",
"return",
"{",
"...",
"conf",
",",
"type",
":",
"'LinearPileupDisplay'",
",",
"name",
":",
"`${",
"getConf",
"(",
"track",
",",
"'name'",
")",
"} pileup`",
",",
"displayId",
":",
"`${",
"self",
".",
"configuration",
".",
"displayId",
"}_pileup_xyz`",
",",
"}",
";",
"}",
",",
"getFeatureByID",
"(",
"blockKey",
",",
"id",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
".",
"getFeatureByID",
"(",
"blockKey",
",",
"id",
")",
";",
"}",
",",
"searchFeatureByID",
"(",
"id",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
".",
"searchFeatureByID",
"(",
"id",
")",
";",
"}",
",",
"get",
"features",
"(",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
".",
"features",
";",
"}",
",",
"get",
"DisplayBlurb",
"(",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
"?.",
"DisplayBlurb",
";",
"}",
",",
"get",
"sortedBy",
"(",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
".",
"sortedBy",
";",
"}",
",",
"get",
"sortedByPosition",
"(",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
".",
"sortedByPosition",
";",
"}",
",",
"get",
"sortedByRefName",
"(",
")",
"{",
"return",
"self",
".",
"PileupDisplay",
".",
"sortedByRefName",
";",
"}",
",",
"get",
"snpCoverageDisplayConfig",
"(",
")",
"{",
"const",
"conf",
"=",
"getConf",
"(",
"self",
",",
"'snpCoverageDisplay'",
")",
";",
"const",
"track",
"=",
"getContainingTrack",
"(",
"self",
")",
";",
"return",
"{",
"...",
"conf",
",",
"type",
":",
"'LinearSNPCoverageDisplay'",
",",
"name",
":",
"`${",
"getConf",
"(",
"track",
",",
"'name'",
")",
"} snp coverage`",
",",
"displayId",
":",
"`${",
"self",
".",
"configuration",
".",
"displayId",
"}_snpcoverage_xyz`",
",",
"}",
";",
"}",
",",
"trackMenuItems",
"(",
")",
"{",
"return",
"[",
"...",
"superTrackMenuItems",
"(",
")",
",",
"{",
"type",
":",
"'subMenu'",
",",
"label",
":",
"'Pileup settings'",
",",
"subMenu",
":",
"self",
".",
"PileupDisplay",
".",
"trackMenuItems",
"(",
")",
",",
"}",
",",
"{",
"type",
":",
"'subMenu'",
",",
"label",
":",
"'SNPCoverage settings'",
",",
"subMenu",
":",
"self",
".",
"SNPCoverageDisplay",
".",
"trackMenuItems",
"(",
")",
",",
"}",
",",
"]",
";",
"}",
",",
"}",
";",
"}",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"setSNPCoverageDisplay",
"(",
"displayConfig",
")",
"{",
"self",
".",
"SNPCoverageDisplay",
"=",
"{",
"type",
":",
"'LinearSNPCoverageDisplay'",
",",
"configuration",
":",
"displayConfig",
",",
"height",
":",
"self",
".",
"snpCovHeight",
",",
"}",
";",
"}",
",",
"setUserBpPerPxLimit",
"(",
"limit",
")",
"{",
"self",
".",
"PileupDisplay",
".",
"setUserBpPerPxLimit",
"(",
"limit",
")",
";",
"self",
".",
"SNPCoverageDisplay",
".",
"setUserBpPerPxLimit",
"(",
"limit",
")",
";",
"}",
",",
"setPileupDisplay",
"(",
"displayConfig",
")",
"{",
"self",
".",
"PileupDisplay",
"=",
"{",
"type",
":",
"'LinearPileupDisplay'",
",",
"configuration",
":",
"displayConfig",
",",
"}",
";",
"}",
",",
"setHeight",
"(",
"displayHeight",
")",
"{",
"if",
"(",
"displayHeight",
">",
"minDisplayHeight",
")",
"{",
"self",
".",
"height",
"=",
"displayHeight",
";",
"}",
"else",
"{",
"self",
".",
"height",
"=",
"minDisplayHeight",
";",
"}",
"return",
"self",
".",
"height",
";",
"}",
",",
"resizeHeight",
"(",
"distance",
")",
"{",
"const",
"oldHeight",
"=",
"self",
".",
"height",
";",
"const",
"newHeight",
"=",
"this",
".",
"setHeight",
"(",
"self",
".",
"height",
"+",
"distance",
")",
";",
"return",
"newHeight",
"-",
"oldHeight",
";",
"}",
",",
"}",
")",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"afterAttach",
"(",
")",
"{",
"addDisposer",
"(",
"self",
",",
"autorun",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"!",
"self",
".",
"SNPCoverageDisplay",
")",
"{",
"self",
".",
"setSNPCoverageDisplay",
"(",
"self",
".",
"snpCoverageDisplayConfig",
")",
";",
"}",
"else",
"if",
"(",
"!",
"deepEqual",
"(",
"self",
".",
"snpCoverageDisplayConfig",
",",
"getSnapshot",
"(",
"self",
".",
"SNPCoverageDisplay",
".",
"configuration",
")",
")",
")",
"{",
"self",
".",
"SNPCoverageDisplay",
".",
"setHeight",
"(",
"self",
".",
"snpCovHeight",
")",
";",
"self",
".",
"SNPCoverageDisplay",
".",
"setConfig",
"(",
"self",
".",
"snpCoverageDisplayConfig",
")",
";",
"}",
"if",
"(",
"!",
"self",
".",
"PileupDisplay",
")",
"{",
"self",
".",
"setPileupDisplay",
"(",
"self",
".",
"pileupDisplayConfig",
")",
";",
"}",
"else",
"if",
"(",
"!",
"deepEqual",
"(",
"self",
".",
"pileupDisplayConfig",
",",
"getSnapshot",
"(",
"self",
".",
"PileupDisplay",
".",
"configuration",
")",
")",
")",
"{",
"self",
".",
"PileupDisplay",
".",
"setConfig",
"(",
"self",
".",
"pileupDisplayConfig",
")",
";",
"}",
"if",
"(",
"self",
".",
"PileupDisplay",
".",
"filterBy",
"&&",
"!",
"deepEqual",
"(",
"getSnapshot",
"(",
"self",
".",
"PileupDisplay",
".",
"filterBy",
")",
",",
"getSnapshot",
"(",
"self",
".",
"SNPCoverageDisplay",
".",
"filterBy",
")",
")",
")",
"{",
"self",
".",
"SNPCoverageDisplay",
".",
"setFilterBy",
"(",
"getSnapshot",
"(",
"self",
".",
"PileupDisplay",
".",
"filterBy",
")",
")",
";",
"}",
"if",
"(",
"self",
".",
"PileupDisplay",
".",
"colorBy",
"&&",
"!",
"deepEqual",
"(",
"getSnapshot",
"(",
"self",
".",
"PileupDisplay",
".",
"colorBy",
")",
",",
"self",
".",
"SNPCoverageDisplay",
".",
"colorBy",
"?",
"getSnapshot",
"(",
"self",
".",
"SNPCoverageDisplay",
".",
"colorBy",
")",
":",
"{",
"}",
")",
")",
"{",
"self",
".",
"SNPCoverageDisplay",
".",
"setColorBy",
"(",
"getSnapshot",
"(",
"self",
".",
"PileupDisplay",
".",
"colorBy",
")",
")",
";",
"}",
"}",
")",
")",
";",
"addDisposer",
"(",
"self",
",",
"autorun",
"(",
"(",
")",
"=>",
"{",
"self",
".",
"setSNPCoverageHeight",
"(",
"self",
".",
"SNPCoverageDisplay",
".",
"height",
")",
";",
"}",
")",
")",
";",
"}",
",",
"async",
"renderSvg",
"(",
"opts",
")",
"{",
"const",
"pileupHeight",
"=",
"self",
".",
"height",
"-",
"self",
".",
"SNPCoverageDisplay",
".",
"height",
";",
"await",
"when",
"(",
"(",
")",
"=>",
"self",
".",
"PileupDisplay",
".",
"ready",
")",
";",
"return",
"(",
"<",
">",
"<",
"g",
">",
"{",
"await",
"self",
".",
"SNPCoverageDisplay",
".",
"renderSvg",
"(",
"opts",
")",
"}",
"<",
"/g>",
"<",
"g",
"transform",
"=",
"{",
"`translate(0 ${",
"self",
".",
"SNPCoverageDisplay",
".",
"height",
"})`",
"}",
">",
"{",
"await",
"self",
".",
"PileupDisplay",
".",
"renderSvg",
"(",
"{",
"...",
"opts",
",",
"overrideHeight",
":",
"pileupHeight",
",",
"}",
")",
"}",
"<",
"/g>",
"<",
"/>);",
"}",
",",
"}",
")",
")",
";",
"}",
";",
"export",
"default",
"stateModelFactory",
";",
"export",
"type",
"AlignmentsDisplayStateModel",
"=",
"ReturnType",
"<",
"typeof",
"stateModelFactory",
">",
";",
"export",
"type",
"AlignmentsDisplayModel",
"=",
"Instance",
"<",
"AlignmentsDisplayStateModel",
">",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
731,
null,
null,
3083,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
9615,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
9615,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
3,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
6,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660145 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"getConf",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"ResizeHandle",
"}",
"from",
"'@jbrowse/core/ui'",
";",
"import",
"{",
"AlignmentsDisplayModel",
"}",
"from",
"'../models/model'",
";",
"function",
"AlignmentsDisplay",
"(",
"{",
"model",
"}",
")",
"{",
"const",
"{",
"PileupDisplay",
",",
"SNPCoverageDisplay",
",",
"showPileup",
",",
"showCoverage",
"}",
"=",
"model",
";",
"return",
"(",
"<",
"div",
"data",
"-",
"testid",
"=",
"{",
"`display-${",
"getConf",
"(",
"model",
",",
"'displayId'",
")",
"}`",
"}",
"style",
"=",
"{",
"{",
"position",
":",
"'relative'",
"}",
"}",
">",
"<",
"div",
"data",
"-",
"testid",
"=",
"\"Blockset-snpcoverage\"",
">",
"{",
"showCoverage",
"?",
"(",
"<",
"SNPCoverageDisplay",
".",
"RenderingComponent",
"model",
"=",
"{",
"SNPCoverageDisplay",
"}",
"/",
">",
")",
":",
"null",
"}",
"<",
"/div>",
"<",
"ResizeHandle",
"onDrag",
"=",
"{",
"delta",
"=>",
"{",
"if",
"(",
"SNPCoverageDisplay",
")",
"{",
"SNPCoverageDisplay",
".",
"setHeight",
"(",
"SNPCoverageDisplay",
".",
"height",
"+",
"delta",
")",
";",
"return",
"delta",
";",
"}",
"return",
"0",
";",
"}",
"}",
"style",
"=",
"{",
"{",
"position",
":",
"'absolute'",
",",
"top",
":",
"showCoverage",
"?",
"SNPCoverageDisplay",
".",
"height",
"+",
"2",
":",
"0",
",",
"height",
":",
"3",
",",
"}",
"}",
"/>",
"<",
"div",
"data",
"-",
"testid",
"=",
"\"Blockset-pileup\"",
"style",
"=",
"{",
"{",
"position",
":",
"'absolute'",
",",
"top",
":",
"showCoverage",
"?",
"SNPCoverageDisplay",
".",
"height",
"+",
"5",
":",
"0",
",",
"height",
":",
"3",
",",
"}",
"}",
">",
"{",
"showPileup",
"?",
"(",
"<",
"PileupDisplay",
".",
"RenderingComponent",
"model",
"=",
"{",
"PileupDisplay",
"}",
"/",
">",
")",
":",
"null",
"}",
"<",
"/div>",
"<",
"/div>);",
"}",
"export",
"default",
"observer",
"(",
"AlignmentsDisplay",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660146 | [
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"baseLinearDisplayConfigSchema",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"import",
"{",
"types",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"export",
"default",
"function",
"SNPCoverageConfigFactory",
"(",
"pluginManager",
")",
"{",
"const",
"SNPCoverageRendererConfigSchema",
"=",
"pluginManager",
".",
"getRendererType",
"(",
"'SNPCoverageRenderer'",
")",
".",
"configSchema",
";",
"return",
"ConfigurationSchema",
"(",
"'LinearSNPCoverageDisplay'",
",",
"{",
"autoscale",
":",
"{",
"type",
":",
"'stringEnum'",
",",
"defaultValue",
":",
"'local'",
",",
"model",
":",
"types",
".",
"enumeration",
"(",
"'Autoscale type'",
",",
"[",
"'local'",
"]",
")",
",",
"description",
":",
"'performs local autoscaling (no other options for SNP Coverage available)'",
",",
"}",
",",
"minScore",
":",
"{",
"type",
":",
"'number'",
",",
"defaultValue",
":",
"Number",
".",
"MIN_VALUE",
",",
"description",
":",
"'minimum value for the y-scale'",
",",
"}",
",",
"maxScore",
":",
"{",
"type",
":",
"'number'",
",",
"description",
":",
"'maximum value for the y-scale'",
",",
"defaultValue",
":",
"Number",
".",
"MAX_VALUE",
",",
"}",
",",
"scaleType",
":",
"{",
"type",
":",
"'stringEnum'",
",",
"model",
":",
"types",
".",
"enumeration",
"(",
"'Scale type'",
",",
"[",
"'linear'",
",",
"'log'",
"]",
")",
",",
"description",
":",
"'The type of scale to use'",
",",
"defaultValue",
":",
"'linear'",
",",
"}",
",",
"inverted",
":",
"{",
"type",
":",
"'boolean'",
",",
"description",
":",
"'draw upside down'",
",",
"defaultValue",
":",
"false",
",",
"}",
",",
"maxDisplayedBpPerPx",
":",
"{",
"type",
":",
"'number'",
",",
"description",
":",
"'maximum bpPerPx that is displayed in the view'",
",",
"defaultValue",
":",
"100",
",",
"}",
",",
"headroom",
":",
"{",
"type",
":",
"'number'",
",",
"description",
":",
"'round the upper value of the domain scale to the nearest N'",
",",
"defaultValue",
":",
"0",
",",
"}",
",",
"renderers",
":",
"ConfigurationSchema",
"(",
"'RenderersConfiguration'",
",",
"{",
"SNPCoverageRenderer",
":",
"SNPCoverageRendererConfigSchema",
",",
"}",
")",
",",
"}",
",",
"{",
"baseConfiguration",
":",
"baseLinearDisplayConfigSchema",
",",
"explicitlyTyped",
":",
"true",
"}",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660147 | [
"import",
"React",
"from",
"'react'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"Feature",
"}",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"Tooltip",
"}",
"from",
"'@jbrowse/plugin-wiggle'",
";",
"type",
"Count",
"=",
"{",
"[",
"key",
"]",
":",
"{",
"total",
":",
"number",
";",
"strands",
":",
"{",
"[",
"key",
"]",
":",
"number",
";",
"}",
";",
"}",
";",
"}",
";",
"type",
"SNPInfo",
"=",
"{",
"ref",
":",
"Count",
";",
"cov",
":",
"Count",
";",
"lowqual",
":",
"Count",
";",
"noncov",
":",
"Count",
";",
"delskips",
":",
"Count",
";",
"total",
":",
"number",
";",
"}",
";",
"const",
"en",
"=",
"(",
"n",
")",
"=>",
"n",
".",
"toLocaleString",
"(",
"'en-US'",
")",
";",
"const",
"TooltipContents",
"=",
"React",
".",
"forwardRef",
"(",
"(",
"{",
"feature",
"}",
",",
"ref",
")",
"=>",
"{",
"const",
"start",
"=",
"feature",
".",
"get",
"(",
"'start'",
")",
";",
"const",
"end",
"=",
"feature",
".",
"get",
"(",
"'end'",
")",
";",
"const",
"name",
"=",
"feature",
".",
"get",
"(",
"'refName'",
")",
";",
"const",
"loc",
"=",
"[",
"name",
",",
"start",
"===",
"end",
"?",
"en",
"(",
"start",
")",
":",
"`${",
"en",
"(",
"start",
")",
"}..${",
"en",
"(",
"end",
")",
"}`",
"]",
".",
"filter",
"(",
"f",
"=>",
"!",
"!",
"f",
")",
".",
"join",
"(",
"':'",
")",
";",
"const",
"info",
"=",
"feature",
".",
"get",
"(",
"'snpinfo'",
")",
"as",
"SNPInfo",
";",
"const",
"total",
"=",
"info",
"?.",
"total",
";",
"return",
"(",
"<",
"div",
"ref",
"=",
"{",
"ref",
"}",
">",
"<",
"table",
">",
"<",
"caption",
">",
"{",
"loc",
"}",
"<",
"/caption>",
"<",
"thead",
">",
"<",
"tr",
">",
"<",
"th",
">",
"Base",
"<",
"/th>",
"<",
"th",
">",
"Count",
"<",
"/th>",
"<",
"th",
">",
"%",
"of",
"Total",
"<",
"/th>",
"<",
"th",
">",
"Strands",
"<",
"/th>",
"<",
"th",
">",
"Source",
"<",
"/th>",
"<",
"/tr>",
"<",
"/thead>",
"<",
"tbody",
">",
"<",
"tr",
">",
"<",
"td",
">",
"Total",
"<",
"/td>",
"<",
"td",
">",
"{",
"total",
"}",
"<",
"/td>",
"<",
"td",
"/",
">",
"<",
"/tr>",
"{",
"Object",
".",
"entries",
"(",
"info",
")",
".",
"map",
"(",
"(",
"[",
"key",
",",
"entry",
"]",
")",
"=>",
"{",
"return",
"Object",
".",
"entries",
"(",
"entry",
")",
".",
"map",
"(",
"(",
"[",
"base",
",",
"score",
"]",
")",
"=>",
"{",
"const",
"{",
"strands",
"}",
"=",
"score",
";",
"return",
"(",
"<",
"tr",
"key",
"=",
"{",
"base",
"}",
">",
"<",
"td",
">",
"{",
"base",
".",
"toUpperCase",
"(",
")",
"}",
"<",
"/td>",
"<",
"td",
">",
"{",
"score",
".",
"total",
"}",
"<",
"/td>",
"<",
"td",
">",
"{",
"base",
"===",
"'total'",
"||",
"base",
"===",
"'skip'",
"?",
"'---'",
":",
"`${",
"Math",
".",
"floor",
"(",
"(",
"score",
".",
"total",
"/",
"total",
")",
"*",
"100",
")",
"}%`",
"}",
"<",
"/td>",
"<",
"td",
">",
"{",
"strands",
"[",
"'-1'",
"]",
"?",
"`${",
"strands",
"[",
"'-1'",
"]",
"}(-)`",
":",
"''",
"}",
"{",
"strands",
"[",
"'1'",
"]",
"?",
"`${",
"strands",
"[",
"'1'",
"]",
"}(+)`",
":",
"''",
"}",
"<",
"/td>",
"<",
"td",
">",
"{",
"key",
"}",
"<",
"/td>",
"<",
"/tr>);",
"}",
")",
";",
"}",
")",
"}",
"<",
"/tbody>",
"<",
"/table>",
"<",
"/div>);",
"}",
")",
";",
"type",
"Coord",
"=",
"[",
"number",
",",
"number",
"]",
";",
"const",
"SNPCoverageTooltip",
"=",
"observer",
"(",
"(",
"props",
")",
"=>",
"{",
"const",
"{",
"model",
"}",
"=",
"props",
";",
"const",
"{",
"featureUnderMouse",
":",
"feat",
"}",
"=",
"model",
";",
"return",
"feat",
"&&",
"feat",
".",
"get",
"(",
"'type'",
")",
"===",
"'skip'",
"?",
"null",
":",
"(",
"<",
"Tooltip",
"TooltipContents",
"=",
"{",
"TooltipContents",
"}",
"{",
"...",
"props",
"}",
"/>);",
"}",
")",
";",
"export",
"default",
"SNPCoverageTooltip",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660148 | [
"import",
"{",
"addDisposer",
",",
"types",
",",
"cast",
",",
"getEnv",
",",
"getSnapshot",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"{",
"observable",
",",
"autorun",
"}",
"from",
"'mobx'",
";",
"import",
"{",
"getConf",
",",
"readConfObject",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"linearWiggleDisplayModelFactory",
"}",
"from",
"'@jbrowse/plugin-wiggle'",
";",
"import",
"{",
"AnyConfigurationSchemaType",
",",
"AnyConfigurationModel",
",",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"SerializableFilterChain",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/util/serializableFilterChain'",
";",
"import",
"{",
"getContainingView",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"Tooltip",
"from",
"'../components/Tooltip'",
";",
"import",
"{",
"getUniqueModificationValues",
"}",
"from",
"'../../shared'",
";",
"import",
"{",
"LinearGenomeViewModel",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"const",
"rendererTypes",
"=",
"new",
"Map",
"(",
"[",
"[",
"'snpcoverage'",
",",
"'SNPCoverageRenderer'",
"]",
"]",
")",
";",
"type",
"LGV",
"=",
"LinearGenomeViewModel",
";",
"const",
"stateModelFactory",
"=",
"(",
"pluginManager",
",",
"configSchema",
")",
"=>",
"types",
".",
"compose",
"(",
"'LinearSNPCoverageDisplay'",
",",
"linearWiggleDisplayModelFactory",
"(",
"pluginManager",
",",
"configSchema",
")",
",",
"types",
".",
"model",
"(",
"{",
"type",
":",
"types",
".",
"literal",
"(",
"'LinearSNPCoverageDisplay'",
")",
",",
"drawInterbaseCounts",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"boolean",
")",
",",
"drawIndicators",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"boolean",
")",
",",
"drawArcs",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"boolean",
")",
",",
"filterBy",
":",
"types",
".",
"optional",
"(",
"types",
".",
"model",
"(",
"{",
"flagInclude",
":",
"types",
".",
"optional",
"(",
"types",
".",
"number",
",",
"0",
")",
",",
"flagExclude",
":",
"types",
".",
"optional",
"(",
"types",
".",
"number",
",",
"1540",
")",
",",
"readName",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"string",
")",
",",
"tagFilter",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"model",
"(",
"{",
"tag",
":",
"types",
".",
"string",
",",
"value",
":",
"types",
".",
"string",
"}",
")",
")",
",",
"}",
")",
",",
"{",
"}",
")",
",",
"colorBy",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"model",
"(",
"{",
"type",
":",
"types",
".",
"string",
",",
"tag",
":",
"types",
".",
"maybe",
"(",
"types",
".",
"string",
")",
",",
"}",
")",
")",
",",
"}",
")",
")",
".",
"volatile",
"(",
"(",
")",
"=>",
"(",
"{",
"modificationTagMap",
":",
"observable",
".",
"map",
"(",
"{",
"}",
")",
",",
"}",
")",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"setConfig",
"(",
"configuration",
")",
"{",
"self",
".",
"configuration",
"=",
"configuration",
";",
"}",
",",
"setFilterBy",
"(",
"filter",
")",
"{",
"self",
".",
"filterBy",
"=",
"cast",
"(",
"filter",
")",
";",
"}",
",",
"setColorBy",
"(",
"colorBy",
"?",
")",
"{",
"self",
".",
"colorBy",
"=",
"cast",
"(",
"colorBy",
")",
";",
"}",
",",
"updateModificationColorMap",
"(",
"uniqueModifications",
")",
"{",
"const",
"colorPalette",
"=",
"[",
"'red'",
",",
"'blue'",
",",
"'green'",
",",
"'orange'",
",",
"'purple'",
"]",
";",
"let",
"i",
"=",
"0",
";",
"uniqueModifications",
".",
"forEach",
"(",
"value",
"=>",
"{",
"if",
"(",
"!",
"self",
".",
"modificationTagMap",
".",
"has",
"(",
"value",
")",
")",
"{",
"const",
"newColor",
"=",
"colorPalette",
"[",
"i",
"++",
"]",
";",
"self",
".",
"modificationTagMap",
".",
"set",
"(",
"value",
",",
"newColor",
")",
";",
"}",
"}",
")",
";",
"}",
",",
"}",
")",
")",
".",
"views",
"(",
"self",
"=>",
"{",
"const",
"{",
"renderProps",
":",
"superRenderProps",
"}",
"=",
"self",
";",
"return",
"{",
"get",
"rendererConfig",
"(",
")",
"{",
"const",
"configBlob",
"=",
"getConf",
"(",
"self",
",",
"[",
"'renderers'",
",",
"self",
".",
"rendererTypeName",
"]",
")",
"||",
"{",
"}",
";",
"return",
"self",
".",
"rendererType",
".",
"configSchema",
".",
"create",
"(",
"{",
"...",
"configBlob",
",",
"drawInterbaseCounts",
":",
"self",
".",
"drawInterbaseCounts",
"===",
"undefined",
"?",
"configBlob",
".",
"drawInterbaseCounts",
":",
"self",
".",
"drawInterbaseCounts",
",",
"drawIndicators",
":",
"self",
".",
"drawIndicators",
"===",
"undefined",
"?",
"configBlob",
".",
"drawIndicators",
":",
"self",
".",
"drawIndicators",
",",
"drawArcs",
":",
"self",
".",
"drawArcs",
"===",
"undefined",
"?",
"configBlob",
".",
"drawArcs",
":",
"self",
".",
"drawArcs",
",",
"}",
",",
"getEnv",
"(",
"self",
")",
")",
";",
"}",
",",
"get",
"drawArcsSetting",
"(",
")",
"{",
"return",
"self",
".",
"drawArcs",
"!==",
"undefined",
"?",
"self",
".",
"drawArcs",
":",
"readConfObject",
"(",
"this",
".",
"rendererConfig",
",",
"'drawArcs'",
")",
";",
"}",
",",
"get",
"drawInterbaseCountsSetting",
"(",
")",
"{",
"return",
"self",
".",
"drawInterbaseCounts",
"!==",
"undefined",
"?",
"self",
".",
"drawInterbaseCounts",
":",
"readConfObject",
"(",
"this",
".",
"rendererConfig",
",",
"'drawInterbaseCounts'",
")",
";",
"}",
",",
"get",
"drawIndicatorsSetting",
"(",
")",
"{",
"return",
"self",
".",
"drawIndicators",
"!==",
"undefined",
"?",
"self",
".",
"drawIndicators",
":",
"readConfObject",
"(",
"this",
".",
"rendererConfig",
",",
"'drawIndicators'",
")",
";",
"}",
",",
"get",
"modificationsReady",
"(",
")",
"{",
"return",
"self",
".",
"colorBy",
"?.",
"type",
"===",
"'modifications'",
"?",
"Object",
".",
"keys",
"(",
"JSON",
".",
"parse",
"(",
"JSON",
".",
"stringify",
"(",
"self",
".",
"modificationTagMap",
")",
")",
")",
".",
"length",
">",
"0",
":",
"true",
";",
"}",
",",
"renderProps",
"(",
")",
"{",
"return",
"{",
"...",
"superRenderProps",
"(",
")",
",",
"notReady",
":",
"!",
"self",
".",
"ready",
"||",
"!",
"this",
".",
"modificationsReady",
",",
"filters",
":",
"self",
".",
"filters",
",",
"modificationTagMap",
":",
"JSON",
".",
"parse",
"(",
"JSON",
".",
"stringify",
"(",
"self",
".",
"modificationTagMap",
")",
")",
",",
"colorBy",
":",
"self",
".",
"colorBy",
"?",
"getSnapshot",
"(",
"self",
".",
"colorBy",
")",
":",
"undefined",
",",
"}",
";",
"}",
",",
"}",
";",
"}",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"toggleDrawIndicators",
"(",
")",
"{",
"self",
".",
"drawIndicators",
"=",
"!",
"self",
".",
"drawIndicatorsSetting",
";",
"}",
",",
"toggleDrawInterbaseCounts",
"(",
")",
"{",
"self",
".",
"drawInterbaseCounts",
"=",
"!",
"self",
".",
"drawInterbaseCountsSetting",
";",
"}",
",",
"toggleDrawArcs",
"(",
")",
"{",
"self",
".",
"drawArcs",
"=",
"!",
"self",
".",
"drawArcsSetting",
";",
"}",
",",
"afterAttach",
"(",
")",
"{",
"addDisposer",
"(",
"self",
",",
"autorun",
"(",
"async",
"(",
")",
"=>",
"{",
"try",
"{",
"const",
"{",
"colorBy",
"}",
"=",
"self",
";",
"const",
"{",
"staticBlocks",
"}",
"=",
"getContainingView",
"(",
"self",
")",
"as",
"LGV",
";",
"if",
"(",
"colorBy",
"?.",
"type",
"===",
"'modifications'",
")",
"{",
"const",
"vals",
"=",
"await",
"getUniqueModificationValues",
"(",
"self",
",",
"getConf",
"(",
"self",
".",
"parentTrack",
",",
"'adapter'",
")",
",",
"colorBy",
",",
"staticBlocks",
")",
";",
"self",
".",
"updateModificationColorMap",
"(",
"vals",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"error",
")",
";",
"self",
".",
"setError",
"(",
"error",
")",
";",
"}",
"}",
",",
"{",
"delay",
":",
"1000",
"}",
")",
")",
";",
"}",
",",
"}",
")",
")",
".",
"views",
"(",
"self",
"=>",
"{",
"const",
"{",
"trackMenuItems",
":",
"superTrackMenuItems",
"}",
"=",
"self",
";",
"return",
"{",
"get",
"TooltipComponent",
"(",
")",
"{",
"return",
"Tooltip",
";",
"}",
",",
"get",
"adapterConfig",
"(",
")",
"{",
"const",
"subadapter",
"=",
"getConf",
"(",
"self",
".",
"parentTrack",
",",
"'adapter'",
")",
";",
"return",
"{",
"type",
":",
"'SNPCoverageAdapter'",
",",
"subadapter",
",",
"}",
";",
"}",
",",
"get",
"rendererTypeName",
"(",
")",
"{",
"return",
"rendererTypes",
".",
"get",
"(",
"'snpcoverage'",
")",
";",
"}",
",",
"get",
"needsScalebar",
"(",
")",
"{",
"return",
"true",
";",
"}",
",",
"contextMenuItems",
"(",
")",
"{",
"return",
"[",
"]",
";",
"}",
",",
"trackMenuItems",
"(",
")",
"{",
"return",
"[",
"...",
"superTrackMenuItems",
"(",
")",
",",
"{",
"label",
":",
"'Draw insertion/clipping indicators'",
",",
"type",
":",
"'checkbox'",
",",
"checked",
":",
"self",
".",
"drawIndicatorsSetting",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"toggleDrawIndicators",
"(",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Draw insertion/clipping counts'",
",",
"type",
":",
"'checkbox'",
",",
"checked",
":",
"self",
".",
"drawInterbaseCountsSetting",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"toggleDrawInterbaseCounts",
"(",
")",
";",
"}",
",",
"}",
",",
"{",
"label",
":",
"'Draw arcs'",
",",
"type",
":",
"'checkbox'",
",",
"checked",
":",
"self",
".",
"drawArcsSetting",
",",
"onClick",
":",
"(",
")",
"=>",
"{",
"self",
".",
"toggleDrawArcs",
"(",
")",
";",
"}",
",",
"}",
",",
"]",
";",
"}",
",",
"get",
"filters",
"(",
")",
"{",
"let",
"filters",
"=",
"[",
"]",
";",
"if",
"(",
"self",
".",
"filterBy",
")",
"{",
"const",
"{",
"flagInclude",
",",
"flagExclude",
",",
"tagFilter",
",",
"readName",
"}",
"=",
"self",
".",
"filterBy",
";",
"filters",
"=",
"[",
"`jexl:get(feature,'snpinfo') != undefined ? true : `",
"+",
"`((get(feature,'flags')&${",
"flagInclude",
"})==${",
"flagInclude",
"}) && `",
"+",
"`!((get(feature,'flags')&${",
"flagExclude",
"}))`",
",",
"]",
";",
"if",
"(",
"tagFilter",
")",
"{",
"const",
"{",
"tag",
",",
"value",
"}",
"=",
"tagFilter",
";",
"filters",
".",
"push",
"(",
"`jexl:get(feature,'snpinfo') != undefined ? true : `",
"+",
"`\"${",
"value",
"}\" =='*' ? getTag(feature,\"${",
"tag",
"}\") != undefined : `",
"+",
"`getTag(feature,\"${",
"tag",
"}\") == \"${",
"value",
"}\"`",
")",
";",
"}",
"if",
"(",
"readName",
")",
"{",
"filters",
".",
"push",
"(",
"`jexl:get(feature,'snpinfo') != undefined ? true : `",
"+",
"`get(feature,'name') == \"${",
"readName",
"}\"`",
")",
";",
"}",
"}",
"return",
"new",
"SerializableFilterChain",
"(",
"{",
"filters",
"}",
")",
";",
"}",
",",
"}",
";",
"}",
")",
";",
"export",
"type",
"SNPCoverageDisplayModel",
"=",
"ReturnType",
"<",
"typeof",
"stateModelFactory",
">",
";",
"export",
"default",
"stateModelFactory",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
19,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
731,
null,
null,
3083,
null,
46567,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
9615,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
5,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660149 | [
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"configSchemaFactory",
"from",
"'./models/configSchema'",
";",
"import",
"modelFactory",
"from",
"'./models/model'",
";",
"import",
"{",
"LinearWiggleDisplayReactComponent",
"}",
"from",
"'@jbrowse/plugin-wiggle'",
";",
"import",
"DisplayType",
"from",
"'@jbrowse/core/pluggableElementTypes/DisplayType'",
";",
"export",
"default",
"function",
"register",
"(",
"pluginManager",
")",
"{",
"pluginManager",
".",
"addDisplayType",
"(",
"(",
")",
"=>",
"{",
"const",
"configSchema",
"=",
"configSchemaFactory",
"(",
"pluginManager",
")",
";",
"return",
"new",
"DisplayType",
"(",
"{",
"name",
":",
"'LinearSNPCoverageDisplay'",
",",
"configSchema",
",",
"stateModel",
":",
"modelFactory",
"(",
"pluginManager",
",",
"configSchema",
")",
",",
"trackType",
":",
"'AlignmentsTrack'",
",",
"viewType",
":",
"'LinearGenomeView'",
",",
"ReactComponent",
":",
"LinearWiggleDisplayReactComponent",
",",
"}",
")",
";",
"}",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660150 | [
"import",
"configSchemaFactory",
"from",
"'./configSchema'",
";",
"import",
"modelFactory",
"from",
"'./model'",
";",
"import",
"DisplayType",
"from",
"'@jbrowse/core/pluggableElementTypes/DisplayType'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"BaseLinearDisplayComponent",
"}",
"from",
"'@jbrowse/plugin-linear-genome-view'",
";",
"export",
"default",
"function",
"register",
"(",
"pluginManager",
")",
"{",
"pluginManager",
".",
"addDisplayType",
"(",
"(",
")",
"=>",
"{",
"const",
"configSchema",
"=",
"configSchemaFactory",
"(",
"pluginManager",
")",
";",
"return",
"new",
"DisplayType",
"(",
"{",
"name",
":",
"'LinearPileupDisplay'",
",",
"configSchema",
",",
"stateModel",
":",
"modelFactory",
"(",
"configSchema",
")",
",",
"trackType",
":",
"'AlignmentsTrack'",
",",
"viewType",
":",
"'LinearGenomeView'",
",",
"ReactComponent",
":",
"BaseLinearDisplayComponent",
",",
"}",
")",
";",
"}",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660151 | [
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"TrackType",
"from",
"'@jbrowse/core/pluggableElementTypes/TrackType'",
";",
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"createBaseTrackConfig",
",",
"createBaseTrackModel",
",",
"}",
"from",
"'@jbrowse/core/pluggableElementTypes/models'",
";",
"function",
"configSchemaFactory",
"(",
"pluginManager",
")",
"{",
"return",
"ConfigurationSchema",
"(",
"'AlignmentsTrack'",
",",
"{",
"}",
",",
"{",
"baseConfiguration",
":",
"createBaseTrackConfig",
"(",
"pluginManager",
")",
"}",
")",
";",
"}",
"export",
"default",
"function",
"register",
"(",
"pluginManager",
")",
"{",
"pluginManager",
".",
"addTrackType",
"(",
"(",
")",
"=>",
"{",
"const",
"configSchema",
"=",
"configSchemaFactory",
"(",
"pluginManager",
")",
";",
"const",
"track",
"=",
"new",
"TrackType",
"(",
"{",
"name",
":",
"'AlignmentsTrack'",
",",
"configSchema",
",",
"stateModel",
":",
"createBaseTrackModel",
"(",
"pluginManager",
",",
"'AlignmentsTrack'",
",",
"configSchema",
")",
",",
"}",
")",
";",
"const",
"linearAlignmentsDisplay",
"=",
"pluginManager",
".",
"getDisplayType",
"(",
"'LinearAlignmentsDisplay'",
")",
";",
"track",
".",
"addDisplayType",
"(",
"linearAlignmentsDisplay",
")",
";",
"return",
"track",
";",
"}",
")",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660152 | [
"import",
"React",
",",
"{",
"useState",
"}",
"from",
"'react'",
";",
"import",
"{",
"Typography",
",",
"Link",
",",
"Paper",
",",
"Checkbox",
",",
"FormControlLabel",
",",
"FormGroup",
",",
"makeStyles",
",",
"}",
"from",
"'@material-ui/core'",
";",
"import",
"{",
"observer",
"}",
"from",
"'mobx-react'",
";",
"import",
"{",
"getSession",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"copy",
"from",
"'copy-to-clipboard'",
";",
"import",
"{",
"FeatureDetails",
",",
"BaseCard",
",",
"SimpleValue",
",",
"}",
"from",
"'@jbrowse/core/BaseFeatureWidget/BaseFeatureDetail'",
";",
"import",
"{",
"parseCigar",
"}",
"from",
"'../BamAdapter/MismatchParser'",
";",
"const",
"useStyles",
"=",
"makeStyles",
"(",
"(",
")",
"=>",
"(",
"{",
"compact",
":",
"{",
"paddingRight",
":",
"0",
",",
"paddingTop",
":",
"0",
",",
"paddingBottom",
":",
"0",
",",
"}",
",",
"}",
")",
")",
";",
"const",
"omit",
"=",
"[",
"'clipPos'",
",",
"'flags'",
"]",
";",
"function",
"AlignmentFlags",
"(",
"props",
")",
"{",
"const",
"classes",
"=",
"useStyles",
"(",
")",
";",
"const",
"{",
"feature",
"}",
"=",
"props",
";",
"const",
"{",
"flags",
"}",
"=",
"feature",
";",
"const",
"flagNames",
"=",
"[",
"'read paired'",
",",
"'read mapped in proper pair'",
",",
"'read unmapped'",
",",
"'mate unmapped'",
",",
"'read reverse strand'",
",",
"'mate reverse strand'",
",",
"'first in pair'",
",",
"'second in pair'",
",",
"'not primary alignment'",
",",
"'read fails platform/vendor quality checks'",
",",
"'read is PCR or optical duplicate'",
",",
"'supplementary alignment'",
",",
"]",
";",
"return",
"(",
"<",
"BaseCard",
"{",
"...",
"props",
"}",
"title",
"=",
"\"Flags\"",
">",
"<",
"SimpleValue",
"name",
"=",
"{",
"'Flag'",
"}",
"value",
"=",
"{",
"flags",
"}",
"/",
">",
"<",
"FormGroup",
">",
"{",
"flagNames",
".",
"map",
"(",
"(",
"name",
",",
"index",
")",
"=>",
"{",
"const",
"val",
"=",
"flags",
"&",
"(",
"1",
"<<",
"index",
")",
";",
"const",
"key",
"=",
"`${",
"name",
"}_${",
"val",
"}`",
";",
"return",
"(",
"<",
"FormControlLabel",
"key",
"=",
"{",
"key",
"}",
"control",
"=",
"{",
"<",
"Checkbox",
"className",
"=",
"{",
"classes",
".",
"compact",
"}",
"checked",
"=",
"{",
"Boolean",
"(",
"val",
")",
"}",
"name",
"=",
"{",
"name",
"}",
"readOnly",
"/",
">",
"}",
"label",
"=",
"{",
"name",
"}",
"/",
">",
")",
";",
"}",
")",
"}",
"<",
"/FormGroup>",
"<",
"/BaseCard>);",
"}",
"function",
"Formatter",
"(",
"{",
"value",
"}",
")",
"{",
"const",
"[",
"show",
",",
"setShow",
"]",
"=",
"useState",
"(",
"false",
")",
";",
"const",
"display",
"=",
"String",
"(",
"value",
")",
";",
"if",
"(",
"display",
".",
"length",
">",
"100",
")",
"{",
"return",
"(",
"<",
">",
"<",
"button",
"type",
"=",
"\"button\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"copy",
"(",
"display",
")",
"}",
">",
"Copy",
"<",
"/button>",
"<",
"button",
"type",
"=",
"\"button\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setShow",
"(",
"val",
"=>",
"!",
"val",
")",
"}",
">",
"{",
"show",
"?",
"'Show less'",
":",
"'Show more'",
"}",
"<",
"/button>",
"<",
"div",
">",
"{",
"show",
"?",
"display",
":",
"`${",
"display",
".",
"slice",
"(",
"0",
",",
"100",
")",
"}...`",
"}",
"<",
"/div>",
"<",
"/>);",
"}",
"return",
"<",
"div",
">",
"{",
"display",
"}",
"<",
"/div>;",
"}",
"function",
"getLengthOnRef",
"(",
"cigar",
")",
"{",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"let",
"lengthOnRef",
"=",
"0",
";",
"for",
"(",
"let",
"i",
"=",
"0",
";",
"i",
"<",
"cigarOps",
".",
"length",
";",
"i",
"+=",
"2",
")",
"{",
"const",
"len",
"=",
"+",
"cigarOps",
"[",
"i",
"]",
";",
"const",
"op",
"=",
"cigarOps",
"[",
"i",
"+",
"1",
"]",
";",
"if",
"(",
"op",
"!==",
"'H'",
"&&",
"op",
"!==",
"'S'",
"&&",
"op",
"!==",
"'I'",
")",
"{",
"lengthOnRef",
"+=",
"len",
";",
"}",
"}",
"return",
"lengthOnRef",
";",
"}",
"function",
"SupplementaryAlignments",
"(",
"props",
")",
"{",
"const",
"{",
"tag",
",",
"model",
"}",
"=",
"props",
";",
"const",
"session",
"=",
"getSession",
"(",
"model",
")",
";",
"return",
"(",
"<",
"BaseCard",
"{",
"...",
"props",
"}",
"title",
"=",
"\"Supplementary alignments\"",
">",
"<",
"Typography",
">",
"List",
"of",
"supplementary",
"alignment",
"locations",
"<",
"/Typography>",
"<",
"ul",
">",
"{",
"tag",
".",
"split",
"(",
"';'",
")",
".",
"filter",
"(",
"SA",
"=>",
"!",
"!",
"SA",
")",
".",
"map",
"(",
"(",
"SA",
",",
"index",
")",
"=>",
"{",
"const",
"[",
"saRef",
",",
"saStart",
",",
"saStrand",
",",
"saCigar",
"]",
"=",
"SA",
".",
"split",
"(",
"','",
")",
";",
"const",
"saLength",
"=",
"getLengthOnRef",
"(",
"saCigar",
")",
";",
"const",
"extra",
"=",
"Math",
".",
"floor",
"(",
"saLength",
"/",
"5",
")",
";",
"const",
"start",
"=",
"+",
"saStart",
";",
"const",
"end",
"=",
"+",
"saStart",
"+",
"saLength",
";",
"const",
"locString",
"=",
"`${",
"saRef",
"}:${",
"Math",
".",
"max",
"(",
"1",
",",
"start",
"-",
"extra",
")",
"}-${",
"end",
"+",
"extra",
"}`",
";",
"const",
"displayStart",
"=",
"start",
".",
"toLocaleString",
"(",
"'en-US'",
")",
";",
"const",
"displayEnd",
"=",
"end",
".",
"toLocaleString",
"(",
"'en-US'",
")",
";",
"const",
"displayString",
"=",
"`${",
"saRef",
"}:${",
"displayStart",
"}-${",
"displayEnd",
"} (${",
"saStrand",
"})`",
";",
"return",
"(",
"<",
"li",
"key",
"=",
"{",
"`${",
"locString",
"}-${",
"index",
"}`",
"}",
">",
"<",
"Link",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"const",
"{",
"view",
"}",
"=",
"model",
";",
"if",
"(",
"view",
")",
"{",
"view",
".",
"navToLocString",
"(",
"locString",
")",
";",
"}",
"else",
"{",
"session",
".",
"notify",
"(",
"'No view associated with this feature detail panel anymore'",
",",
"'warning'",
")",
";",
"}",
"}",
"}",
"href",
"=",
"\"#\"",
">",
"{",
"displayString",
"}",
"<",
"/Link>",
"<",
"/li>);",
"}",
")",
"}",
"<",
"/ul>",
"<",
"/BaseCard>);",
"}",
"function",
"PairLink",
"(",
"{",
"locString",
",",
"model",
"}",
")",
"{",
"const",
"session",
"=",
"getSession",
"(",
"model",
")",
";",
"return",
"(",
"<",
"Link",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"const",
"{",
"view",
"}",
"=",
"model",
";",
"if",
"(",
"view",
")",
"{",
"view",
".",
"navToLocString",
"(",
"locString",
")",
";",
"}",
"else",
"{",
"session",
".",
"notify",
"(",
"'No view associated with this feature detail panel anymore'",
",",
"'warning'",
")",
";",
"}",
"}",
"}",
"href",
"=",
"\"#\"",
">",
"{",
"locString",
"}",
"<",
"/Link>);",
"}",
"function",
"AlignmentFeatureDetails",
"(",
"props",
")",
"{",
"const",
"{",
"model",
"}",
"=",
"props",
";",
"const",
"feat",
"=",
"JSON",
".",
"parse",
"(",
"JSON",
".",
"stringify",
"(",
"model",
".",
"featureData",
")",
")",
";",
"const",
"SA",
"=",
"(",
"feat",
".",
"tags",
"&&",
"feat",
".",
"tags",
".",
"SA",
")",
"||",
"feat",
".",
"SA",
";",
"return",
"(",
"<",
"Paper",
"data",
"-",
"testid",
"=",
"\"alignment-side-drawer\"",
">",
"<",
"FeatureDetails",
"{",
"...",
"props",
"}",
"omit",
"=",
"{",
"omit",
"}",
"feature",
"=",
"{",
"feat",
"}",
"formatter",
"=",
"{",
"(",
"value",
",",
"key",
")",
"=>",
"{",
"return",
"key",
"===",
"'next_segment_position'",
"?",
"(",
"<",
"PairLink",
"model",
"=",
"{",
"model",
"}",
"locString",
"=",
"{",
"value",
"as",
"string",
"}",
"/",
">",
")",
":",
"(",
"<",
"Formatter",
"value",
"=",
"{",
"value",
"}",
"/",
">",
")",
";",
"}",
"}",
"/>",
"{",
"SA",
"?",
"<",
"SupplementaryAlignments",
"model",
"=",
"{",
"model",
"}",
"tag",
"=",
"{",
"SA",
"}",
"/",
">",
":",
"null",
"}",
"<",
"AlignmentFlags",
"feature",
"=",
"{",
"feat",
"}",
"{",
"...",
"props",
"}",
"/>",
"<",
"/Paper>);",
"}",
"export",
"default",
"observer",
"(",
"AlignmentFeatureDetails",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
80,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
6,
null,
null,
null,
80,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
3,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660153 | [
"import",
"{",
"lazy",
"}",
"from",
"'react'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"ElementId",
"}",
"from",
"'@jbrowse/core/util/types/mst'",
";",
"import",
"{",
"types",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"WidgetType",
"from",
"'@jbrowse/core/pluggableElementTypes/WidgetType'",
";",
"const",
"configSchema",
"=",
"ConfigurationSchema",
"(",
"'AlignmentsFeatureWidget'",
",",
"{",
"}",
")",
";",
"export",
"function",
"stateModelFactory",
"(",
"pluginManager",
")",
"{",
"return",
"types",
".",
"model",
"(",
"'AlignmentsFeatureWidget'",
",",
"{",
"id",
":",
"ElementId",
",",
"type",
":",
"types",
".",
"literal",
"(",
"'AlignmentsFeatureWidget'",
")",
",",
"featureData",
":",
"types",
".",
"frozen",
"(",
")",
",",
"view",
":",
"types",
".",
"safeReference",
"(",
"pluginManager",
".",
"pluggableMstType",
"(",
"'view'",
",",
"'stateModel'",
")",
")",
",",
"}",
")",
".",
"actions",
"(",
"self",
"=>",
"(",
"{",
"setFeatureData",
"(",
"data",
")",
"{",
"self",
".",
"featureData",
"=",
"data",
";",
"}",
",",
"clearFeatureData",
"(",
")",
"{",
"self",
".",
"featureData",
"=",
"undefined",
";",
"}",
",",
"}",
")",
")",
";",
"}",
"export",
"default",
"function",
"register",
"(",
"pluginManager",
")",
"{",
"pluginManager",
".",
"addWidgetType",
"(",
"(",
")",
"=>",
"new",
"WidgetType",
"(",
"{",
"name",
":",
"'AlignmentsFeatureWidget'",
",",
"heading",
":",
"'Feature details'",
",",
"configSchema",
",",
"stateModel",
":",
"stateModelFactory",
"(",
"pluginManager",
")",
",",
"ReactComponent",
":",
"lazy",
"(",
"(",
")",
"=>",
"import",
"(",
"'./AlignmentsFeatureDetail'",
")",
")",
",",
"}",
")",
")",
";",
"}",
"export",
"{",
"configSchema",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
731,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660154 | [
"import",
"{",
"getAdapter",
"}",
"from",
"'@jbrowse/core/data_adapters/dataAdapterCache'",
";",
"import",
"RpcMethodType",
"from",
"'@jbrowse/core/pluggableElementTypes/RpcMethodType'",
";",
"import",
"{",
"RenderArgs",
"}",
"from",
"'@jbrowse/core/rpc/coreRpcMethods'",
";",
"import",
"{",
"renameRegionsIfNeeded",
"}",
"from",
"'@jbrowse/core/util'",
";",
"import",
"{",
"Region",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"{",
"RemoteAbortSignal",
"}",
"from",
"'@jbrowse/core/rpc/remoteAbortSignals'",
";",
"import",
"{",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"{",
"BaseFeatureDataAdapter",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"import",
"{",
"getTagAlt",
"}",
"from",
"'../util'",
";",
"import",
"{",
"getModificationTypes",
"}",
"from",
"'../BamAdapter/MismatchParser'",
";",
"export",
"class",
"PileupGetGlobalValueForTag",
"extends",
"RpcMethodType",
"{",
"name",
"=",
"'PileupGetGlobalValueForTag'",
";",
"async",
"serializeArguments",
"(",
"args",
",",
"rpcDriverClassName",
")",
"{",
"const",
"{",
"rootModel",
"}",
"=",
"this",
".",
"pluginManager",
";",
"const",
"assemblyManager",
"=",
"rootModel",
"?.",
"session",
"?.",
"assemblyManager",
";",
"if",
"(",
"!",
"assemblyManager",
")",
"{",
"throw",
"new",
"Error",
"(",
"'no assembly manager available'",
")",
";",
"}",
"const",
"renamedArgs",
"=",
"await",
"renameRegionsIfNeeded",
"(",
"assemblyManager",
",",
"args",
")",
";",
"return",
"super",
".",
"serializeArguments",
"(",
"renamedArgs",
",",
"rpcDriverClassName",
")",
";",
"}",
"async",
"execute",
"(",
"args",
",",
"rpcDriverClassName",
")",
"{",
"const",
"deserializedArgs",
"=",
"await",
"this",
".",
"deserializeArguments",
"(",
"args",
",",
"rpcDriverClassName",
")",
";",
"const",
"{",
"adapterConfig",
",",
"sessionId",
",",
"regions",
",",
"tag",
"}",
"=",
"deserializedArgs",
";",
"const",
"dataAdapter",
"=",
"(",
"await",
"getAdapter",
"(",
"this",
".",
"pluginManager",
",",
"sessionId",
",",
"adapterConfig",
")",
")",
".",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
";",
"const",
"features",
"=",
"dataAdapter",
".",
"getFeaturesInMultipleRegions",
"(",
"regions",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"uniqueValues",
"=",
"new",
"Set",
"<",
"string",
">",
"(",
")",
";",
"featuresArray",
".",
"forEach",
"(",
"feature",
"=>",
"{",
"const",
"tags",
"=",
"feature",
".",
"get",
"(",
"'tags'",
")",
";",
"const",
"val",
"=",
"tags",
"?",
"tags",
"[",
"tag",
"]",
":",
"feature",
".",
"get",
"(",
"tag",
")",
";",
"if",
"(",
"val",
"!==",
"undefined",
")",
"{",
"uniqueValues",
".",
"add",
"(",
"`${",
"val",
"}`",
")",
";",
"}",
"}",
")",
";",
"return",
"[",
"...",
"uniqueValues",
"]",
";",
"}",
"}",
"export",
"class",
"PileupGetVisibleModifications",
"extends",
"RpcMethodType",
"{",
"name",
"=",
"'PileupGetVisibleModifications'",
";",
"async",
"serializeArguments",
"(",
"args",
",",
"rpcDriverClassName",
")",
"{",
"const",
"{",
"rootModel",
"}",
"=",
"this",
".",
"pluginManager",
";",
"const",
"assemblyManager",
"=",
"rootModel",
"?.",
"session",
"?.",
"assemblyManager",
";",
"if",
"(",
"!",
"assemblyManager",
")",
"{",
"throw",
"new",
"Error",
"(",
"'no assembly manager available'",
")",
";",
"}",
"const",
"renamedArgs",
"=",
"await",
"renameRegionsIfNeeded",
"(",
"assemblyManager",
",",
"args",
")",
";",
"return",
"super",
".",
"serializeArguments",
"(",
"renamedArgs",
",",
"rpcDriverClassName",
")",
";",
"}",
"async",
"execute",
"(",
"args",
",",
"rpcDriverClassName",
")",
"{",
"const",
"deserializedArgs",
"=",
"await",
"this",
".",
"deserializeArguments",
"(",
"args",
",",
"rpcDriverClassName",
")",
";",
"const",
"{",
"adapterConfig",
",",
"sessionId",
",",
"regions",
"}",
"=",
"deserializedArgs",
";",
"const",
"dataAdapter",
"=",
"(",
"await",
"getAdapter",
"(",
"this",
".",
"pluginManager",
",",
"sessionId",
",",
"adapterConfig",
")",
")",
".",
"dataAdapter",
"as",
"BaseFeatureDataAdapter",
";",
"const",
"features",
"=",
"dataAdapter",
".",
"getFeaturesInMultipleRegions",
"(",
"regions",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"uniqueValues",
"=",
"new",
"Set",
"<",
"string",
">",
"(",
")",
";",
"featuresArray",
".",
"forEach",
"(",
"feature",
"=>",
"{",
"const",
"val",
"=",
"(",
"getTagAlt",
"(",
"feature",
",",
"'MM'",
",",
"'Mm'",
")",
"as",
"string",
")",
"||",
"''",
";",
"if",
"(",
"val",
"!==",
"undefined",
")",
"{",
"getModificationTypes",
"(",
"val",
")",
".",
"forEach",
"(",
"t",
"=>",
"uniqueValues",
".",
"add",
"(",
"t",
")",
")",
";",
"}",
"}",
")",
";",
"return",
"[",
"...",
"uniqueValues",
"]",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
6,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
30,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
6,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
30,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660155 | [
"import",
"{",
"FileLocation",
"}",
"from",
"'@jbrowse/core/util/types'",
";",
"import",
"Plugin",
"from",
"'@jbrowse/core/Plugin'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"*",
"as",
"MismatchParser",
"from",
"'./BamAdapter/MismatchParser'",
";",
"import",
"{",
"LinearPileupDisplayModel",
"}",
"from",
"'./LinearPileupDisplay/model'",
";",
"import",
"BamAdapterF",
"from",
"'./CramAdapter'",
";",
"import",
"CramAdapterF",
"from",
"'./BamAdapter'",
";",
"import",
"HtsgetBamAdapterF",
"from",
"'./HtsgetBamAdapter'",
";",
"import",
"SNPCoverageAdapterF",
"from",
"'./SNPCoverageAdapter'",
";",
"import",
"SNPCoverageRendererF",
"from",
"'./SNPCoverageRenderer'",
";",
"import",
"PileupRendererF",
"from",
"'./PileupRenderer'",
";",
"import",
"LinearAlignmentsDisplayF",
"from",
"'./LinearAlignmentsDisplay'",
";",
"import",
"LinearSNPCoverageDisplayF",
"from",
"'./LinearSNPCoverageDisplay'",
";",
"import",
"LinearPileupDisplayF",
"from",
"'./LinearPileupDisplay'",
";",
"import",
"AlignmentsTrackF",
"from",
"'./AlignmentsTrack'",
";",
"import",
"AlignmentsFeatureWidgetF",
"from",
"'./AlignmentsFeatureDetail'",
";",
"import",
"{",
"PileupGetGlobalValueForTag",
",",
"PileupGetVisibleModifications",
",",
"}",
"from",
"'./PileupRPC/rpcMethods'",
";",
"import",
"{",
"makeIndex",
",",
"makeIndexType",
",",
"getFileName",
",",
"AdapterGuesser",
",",
"TrackTypeGuesser",
",",
"}",
"from",
"'@jbrowse/core/util/tracks'",
";",
"export",
"{",
"MismatchParser",
"}",
";",
"export",
"type",
"{",
"LinearPileupDisplayModel",
"}",
";",
"export",
"default",
"class",
"AlignmentsPlugin",
"extends",
"Plugin",
"{",
"name",
"=",
"'AlignmentsPlugin'",
";",
"install",
"(",
"pluginManager",
")",
"{",
";",
"[",
"CramAdapterF",
",",
"BamAdapterF",
",",
"LinearPileupDisplayF",
",",
"LinearSNPCoverageDisplayF",
",",
"AlignmentsTrackF",
",",
"SNPCoverageAdapterF",
",",
"HtsgetBamAdapterF",
",",
"PileupRendererF",
",",
"SNPCoverageRendererF",
",",
"LinearAlignmentsDisplayF",
",",
"AlignmentsFeatureWidgetF",
",",
"]",
".",
"map",
"(",
"f",
"=>",
"f",
"(",
"pluginManager",
")",
")",
";",
"pluginManager",
".",
"addToExtensionPoint",
"(",
"'Core-guessAdapterForLocation'",
",",
"(",
"adapterGuesser",
")",
"=>",
"{",
"return",
"(",
"file",
",",
"index",
"?",
",",
"adapterHint",
"?",
")",
"=>",
"{",
"const",
"regexGuess",
"=",
"/\\.cram$/i",
";",
"const",
"adapterName",
"=",
"'CramAdapter'",
";",
"const",
"fileName",
"=",
"getFileName",
"(",
"file",
")",
";",
"if",
"(",
"regexGuess",
".",
"test",
"(",
"fileName",
")",
"||",
"adapterHint",
"===",
"adapterName",
")",
"{",
"return",
"{",
"type",
":",
"adapterName",
",",
"cramLocation",
":",
"file",
",",
"craiLocation",
":",
"index",
"||",
"makeIndex",
"(",
"file",
",",
"'.crai'",
")",
",",
"}",
";",
"}",
"return",
"adapterGuesser",
"(",
"file",
",",
"index",
",",
"adapterHint",
")",
";",
"}",
";",
"}",
")",
";",
"pluginManager",
".",
"addToExtensionPoint",
"(",
"'Core-guessAdapterForLocation'",
",",
"(",
"adapterGuesser",
")",
"=>",
"{",
"return",
"(",
"file",
",",
"index",
"?",
",",
"adapterHint",
"?",
")",
"=>",
"{",
"const",
"regexGuess",
"=",
"/\\.bam$/i",
";",
"const",
"adapterName",
"=",
"'BamAdapter'",
";",
"const",
"fileName",
"=",
"getFileName",
"(",
"file",
")",
";",
"const",
"indexName",
"=",
"index",
"&&",
"getFileName",
"(",
"index",
")",
";",
"if",
"(",
"regexGuess",
".",
"test",
"(",
"fileName",
")",
"||",
"adapterHint",
"===",
"adapterName",
")",
"{",
"return",
"{",
"type",
":",
"adapterName",
",",
"bamLocation",
":",
"file",
",",
"index",
":",
"{",
"location",
":",
"index",
"||",
"makeIndex",
"(",
"file",
",",
"'.bai'",
")",
",",
"indexType",
":",
"makeIndexType",
"(",
"indexName",
",",
"'CSI'",
",",
"'BAI'",
")",
",",
"}",
",",
"}",
";",
"}",
"return",
"adapterGuesser",
"(",
"file",
",",
"index",
",",
"adapterHint",
")",
";",
"}",
";",
"}",
")",
";",
"pluginManager",
".",
"addToExtensionPoint",
"(",
"'Core-guessTrackTypeForLocation'",
",",
"(",
"trackTypeGuesser",
")",
"=>",
"{",
"return",
"(",
"adapterName",
")",
"=>",
"{",
"if",
"(",
"adapterName",
"===",
"'BamAdapter'",
"||",
"adapterName",
"===",
"'CramAdapter'",
")",
"{",
"return",
"'AlignmentsTrack'",
";",
"}",
"return",
"trackTypeGuesser",
"(",
"adapterName",
")",
";",
"}",
";",
"}",
")",
";",
"pluginManager",
".",
"addRpcMethod",
"(",
"(",
")",
"=>",
"new",
"PileupGetGlobalValueForTag",
"(",
"pluginManager",
")",
")",
";",
"pluginManager",
".",
"addRpcMethod",
"(",
"(",
")",
"=>",
"new",
"PileupGetVisibleModifications",
"(",
"pluginManager",
")",
")",
";",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3083,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
42495,
null,
null,
null,
null,
null,
13045,
null,
13045,
null,
null,
2,
null,
null,
null,
null,
null,
27,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
42495,
null,
null,
null,
null,
null,
13045,
null,
13045,
null,
null,
2,
null,
null,
null,
null,
null,
27,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660156 | [
"import",
"{",
"render",
"}",
"from",
"'@testing-library/react'",
";",
"import",
"{",
"types",
"}",
"from",
"'mobx-state-tree'",
";",
"import",
"React",
"from",
"'react'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration'",
";",
"import",
"{",
"stateModelFactory",
"}",
"from",
"'.'",
";",
"import",
"ReactComponent",
"from",
"'./AlignmentsFeatureDetail'",
";",
"test",
"(",
"'open up a widget'",
",",
"(",
")",
"=>",
"{",
"console",
".",
"warn",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"pluginManager",
"=",
"new",
"PluginManager",
"(",
"[",
"]",
")",
";",
"const",
"Session",
"=",
"types",
".",
"model",
"(",
"{",
"pluginManager",
":",
"types",
".",
"optional",
"(",
"types",
".",
"frozen",
"(",
")",
",",
"{",
"}",
")",
",",
"rpcManager",
":",
"types",
".",
"optional",
"(",
"types",
".",
"frozen",
"(",
")",
",",
"{",
"}",
")",
",",
"configuration",
":",
"ConfigurationSchema",
"(",
"'test'",
",",
"{",
"}",
")",
",",
"widget",
":",
"stateModelFactory",
"(",
"pluginManager",
")",
",",
"}",
")",
";",
"const",
"session",
"=",
"Session",
".",
"create",
"(",
"{",
"widget",
":",
"{",
"type",
":",
"'AlignmentsFeatureWidget'",
"}",
",",
"}",
")",
";",
"session",
".",
"widget",
".",
"setFeatureData",
"(",
"{",
"seq",
":",
"'TTGTTGCGGAGTTGAACAACGGCATTAGGAACACTTCCGTCTCTCACTTTTATACGATTATGATTGGTTCTTTAGCCTTGGTTTAGATTGGTAGTAGTAG'",
",",
"start",
":",
"2",
",",
"end",
":",
"102",
",",
"strand",
":",
"1",
",",
"score",
":",
"37",
",",
"qual",
":",
"'17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17 17'",
",",
"MQ",
":",
"37",
",",
"CIGAR",
":",
"'100M'",
",",
"length_on_ref",
":",
"100",
",",
"template_length",
":",
"0",
",",
"seq_length",
":",
"100",
",",
"name",
":",
"'ctgA_3_555_0:0:0_2:0:0_102d'",
",",
"refName",
":",
"'ctgA'",
",",
"type",
":",
"'match'",
",",
"}",
")",
";",
"const",
"{",
"container",
",",
"getByText",
"}",
"=",
"render",
"(",
"<",
"ReactComponent",
"model",
"=",
"{",
"session",
".",
"widget",
"}",
"/",
">",
")",
";",
"expect",
"(",
"container",
".",
"firstChild",
")",
".",
"toMatchSnapshot",
"(",
")",
";",
"expect",
"(",
"getByText",
"(",
"'ctgA:3..102 (+)'",
")",
")",
".",
"toBeTruthy",
"(",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
731,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660157 | [
"import",
"{",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"Adapter",
"from",
"'./BamAdapter'",
";",
"import",
"configSchema",
"from",
"'./configSchema'",
";",
"test",
"(",
"'adapter can fetch features from volvox.bam'",
",",
"async",
"(",
")",
"=>",
"{",
"const",
"adapter",
"=",
"new",
"Adapter",
"(",
"configSchema",
".",
"create",
"(",
"{",
"bamLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.bam'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"index",
":",
"{",
"location",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.bam.bai'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"}",
",",
"}",
")",
")",
";",
"const",
"features",
"=",
"adapter",
".",
"getFeatures",
"(",
"{",
"assemblyName",
":",
"'volvox'",
",",
"refName",
":",
"'ctgA'",
",",
"start",
":",
"0",
",",
"end",
":",
"20000",
",",
"}",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"expect",
"(",
"featuresArray",
"[",
"0",
"]",
".",
"get",
"(",
"'refName'",
")",
")",
".",
"toBe",
"(",
"'ctgA'",
")",
";",
"const",
"featuresJsonArray",
"=",
"featuresArray",
".",
"map",
"(",
"f",
"=>",
"f",
".",
"toJSON",
"(",
")",
")",
";",
"expect",
"(",
"featuresJsonArray",
".",
"length",
")",
".",
"toEqual",
"(",
"3809",
")",
";",
"expect",
"(",
"featuresJsonArray",
".",
"slice",
"(",
"1000",
",",
"1010",
")",
")",
".",
"toMatchSnapshot",
"(",
")",
";",
"expect",
"(",
"adapter",
".",
"refIdToName",
"(",
"0",
")",
")",
".",
"toBe",
"(",
"'ctgA'",
")",
";",
"expect",
"(",
"adapter",
".",
"refIdToName",
"(",
"1",
")",
")",
".",
"toBe",
"(",
"undefined",
")",
";",
"expect",
"(",
"await",
"adapter",
".",
"hasDataForRefName",
"(",
"'ctgA'",
")",
")",
".",
"toBe",
"(",
"true",
")",
";",
"const",
"adapterCSI",
"=",
"new",
"Adapter",
"(",
"configSchema",
".",
"create",
"(",
"{",
"bamLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.bam'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"index",
":",
"{",
"indexType",
":",
"'CSI'",
",",
"location",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.bam.csi'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"}",
",",
"}",
")",
")",
";",
"const",
"featuresCSI",
"=",
"adapterCSI",
".",
"getFeatures",
"(",
"{",
"assemblyName",
":",
"'volvox'",
",",
"refName",
":",
"'ctgA'",
",",
"start",
":",
"0",
",",
"end",
":",
"20000",
",",
"}",
")",
";",
"const",
"featuresArrayCSI",
"=",
"await",
"featuresCSI",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"featuresJsonArrayCSI",
"=",
"featuresArrayCSI",
".",
"map",
"(",
"f",
"=>",
"f",
".",
"toJSON",
"(",
")",
")",
";",
"expect",
"(",
"featuresJsonArrayCSI",
")",
".",
"toEqual",
"(",
"featuresJsonArray",
")",
";",
"}",
")",
";",
"test",
"(",
"'test usage of BamSlightlyLazyFeature toJSON (used in the widget)'",
",",
"async",
"(",
")",
"=>",
"{",
"const",
"adapter",
"=",
"new",
"Adapter",
"(",
"configSchema",
".",
"create",
"(",
"{",
"bamLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.bam'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"index",
":",
"{",
"location",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.bam.bai'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"indexType",
":",
"'BAI'",
",",
"}",
",",
"}",
")",
")",
";",
"const",
"features",
"=",
"adapter",
".",
"getFeatures",
"(",
"{",
"assemblyName",
":",
"'volvox'",
",",
"refName",
":",
"'ctgA'",
",",
"start",
":",
"0",
",",
"end",
":",
"100",
",",
"}",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"f",
"=",
"featuresArray",
"[",
"0",
"]",
".",
"toJSON",
"(",
")",
";",
"expect",
"(",
"f",
".",
"refName",
")",
".",
"toBe",
"(",
"'ctgA'",
")",
";",
"expect",
"(",
"f",
".",
"start",
")",
".",
"toBe",
"(",
"2",
")",
";",
"expect",
"(",
"f",
".",
"end",
")",
".",
"toBe",
"(",
"102",
")",
";",
"expect",
"(",
"f",
".",
"mismatches",
")",
".",
"not",
".",
"toBeTruthy",
"(",
")",
";",
"}",
")",
";",
"test",
"(",
"'test usage of BamSlightlyLazyFeature for extended CIGAR'",
",",
"async",
"(",
")",
"=>",
"{",
"const",
"adapter",
"=",
"new",
"Adapter",
"(",
"configSchema",
".",
"create",
"(",
"{",
"bamLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/extended_cigar.bam'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"index",
":",
"{",
"location",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/extended_cigar.bam.bai'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"indexType",
":",
"'BAI'",
",",
"}",
",",
"}",
")",
")",
";",
"const",
"features",
"=",
"adapter",
".",
"getFeatures",
"(",
"{",
"assemblyName",
":",
"'hg19'",
",",
"refName",
":",
"'1'",
",",
"start",
":",
"13260",
",",
"end",
":",
"13340",
",",
"}",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"f",
"=",
"featuresArray",
"[",
"0",
"]",
";",
"expect",
"(",
"f",
".",
"get",
"(",
"'mismatches'",
")",
")",
".",
"toMatchSnapshot",
"(",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660158 | [
"import",
"{",
"generateMD",
",",
"getMismatches",
",",
"cigarToMismatches",
",",
"parseCigar",
",",
"mdToMismatches",
",",
"getNextRefPos",
",",
"getModificationPositions",
",",
"}",
"from",
"'./MismatchParser'",
";",
"const",
"seq",
"=",
"'AAAAAAAAAACAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTT'",
";",
"test",
"(",
"'cigar to mismatches'",
",",
"(",
")",
"=>",
"{",
"expect",
"(",
"cigarToMismatches",
"(",
"parseCigar",
"(",
"'56M1D45M'",
")",
",",
"seq",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"start",
":",
"56",
",",
"type",
":",
"'deletion'",
",",
"base",
":",
"'*'",
",",
"length",
":",
"1",
"}",
",",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'md to mismatches'",
",",
"(",
")",
"=>",
"{",
"const",
"cigarMismatches",
"=",
"cigarToMismatches",
"(",
"parseCigar",
"(",
"'56M1D45M'",
")",
",",
"seq",
")",
";",
"expect",
"(",
"mdToMismatches",
"(",
"'10A80'",
",",
"parseCigar",
"(",
"'56M1D45M'",
")",
",",
"cigarMismatches",
",",
"seq",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"start",
":",
"10",
",",
"type",
":",
"'mismatch'",
",",
"base",
":",
"'C'",
",",
"altbase",
":",
"'A'",
",",
"length",
":",
"1",
"}",
",",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'get mismatches'",
",",
"(",
")",
"=>",
"{",
"expect",
"(",
"getMismatches",
"(",
"'56M1D45M'",
",",
"'56^A45'",
",",
"seq",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"start",
":",
"56",
",",
"type",
":",
"'deletion'",
",",
"base",
":",
"'*'",
",",
"length",
":",
"1",
"}",
",",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'89M1I11M'",
",",
"'100'",
",",
"'AAAAAAAAAACAAAAAAAAAAAAAACCCCCCCCCCCCCCCCCCCCCCCCCGGGGGGGGGGGGGGGGGGGGGGGGGTTTTTTTTTTTTTTTTTTTTTTTTTA'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"start",
":",
"89",
",",
"type",
":",
"'insertion'",
",",
"base",
":",
"'1'",
",",
"length",
":",
"0",
"}",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'5M2D6M'",
",",
"'5^AC0C5'",
",",
"'GGGGGATTTTTT'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"start",
":",
"5",
",",
"type",
":",
"'deletion'",
",",
"base",
":",
"'*'",
",",
"length",
":",
"2",
"}",
",",
"{",
"start",
":",
"7",
",",
"type",
":",
"'mismatch'",
",",
"base",
":",
"'A'",
",",
"altbase",
":",
"'C'",
",",
"length",
":",
"1",
"}",
",",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'12M'",
",",
"'5A0C5'",
",",
"'GGGGGCATTTTT'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"altbase",
":",
"'A'",
",",
"base",
":",
"'C'",
",",
"length",
":",
"1",
",",
"start",
":",
"5",
",",
"type",
":",
"'mismatch'",
"}",
",",
"{",
"altbase",
":",
"'C'",
",",
"base",
":",
"'A'",
",",
"length",
":",
"1",
",",
"start",
":",
"6",
",",
"type",
":",
"'mismatch'",
"}",
",",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'12M'",
",",
"'5AC5'",
",",
"'GGGGGCATTTTT'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"altbase",
":",
"'A'",
",",
"base",
":",
"'C'",
",",
"length",
":",
"1",
",",
"start",
":",
"5",
",",
"type",
":",
"'mismatch'",
"}",
",",
"{",
"altbase",
":",
"'C'",
",",
"base",
":",
"'A'",
",",
"length",
":",
"1",
",",
"start",
":",
"6",
",",
"type",
":",
"'mismatch'",
"}",
",",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'basic skip'",
",",
"(",
")",
"=>",
"{",
"expect",
"(",
"getMismatches",
"(",
"'6M200N6M'",
",",
"'5AC5'",
",",
"'GGGGGCATTTTT'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"base",
":",
"'N'",
",",
"length",
":",
"200",
",",
"start",
":",
"6",
",",
"type",
":",
"'skip'",
"}",
",",
"{",
"altbase",
":",
"'A'",
",",
"base",
":",
"'C'",
",",
"length",
":",
"1",
",",
"start",
":",
"5",
",",
"type",
":",
"'mismatch'",
"}",
",",
"{",
"altbase",
":",
"'C'",
",",
"base",
":",
"'A'",
",",
"length",
":",
"1",
",",
"start",
":",
"206",
",",
"type",
":",
"'mismatch'",
"}",
",",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'vsbuffalo'",
",",
"(",
")",
"=>",
"{",
"expect",
"(",
"getMismatches",
"(",
"'89M1I11M'",
",",
"'100'",
",",
"'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"base",
":",
"'1'",
",",
"length",
":",
"0",
",",
"start",
":",
"89",
",",
"type",
":",
"'insertion'",
"}",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'9M1I91M'",
",",
"'48T42G8'",
",",
"'AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"base",
":",
"'1'",
",",
"length",
":",
"0",
",",
"start",
":",
"9",
",",
"type",
":",
"'insertion'",
"}",
",",
"{",
"altbase",
":",
"'T'",
",",
"base",
":",
"'A'",
",",
"length",
":",
"1",
",",
"start",
":",
"48",
",",
"type",
":",
"'mismatch'",
",",
"}",
",",
"{",
"altbase",
":",
"'G'",
",",
"base",
":",
"'A'",
",",
"length",
":",
"1",
",",
"start",
":",
"91",
",",
"type",
":",
"'mismatch'",
",",
"}",
",",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'more skip'",
",",
"(",
")",
"=>",
"{",
"expect",
"(",
"getMismatches",
"(",
"'3M200N3M200N3M'",
",",
"'8A'",
",",
"'GGGGGCATTTTT'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"base",
":",
"'N'",
",",
"length",
":",
"200",
",",
"start",
":",
"3",
",",
"type",
":",
"'skip'",
"}",
",",
"{",
"base",
":",
"'N'",
",",
"length",
":",
"200",
",",
"start",
":",
"206",
",",
"type",
":",
"'skip'",
"}",
",",
"{",
"altbase",
":",
"'A'",
",",
"base",
":",
"'T'",
",",
"length",
":",
"1",
",",
"start",
":",
"408",
",",
"type",
":",
"'mismatch'",
"}",
",",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'31M1I17M1D37M'",
",",
"'6G4C20G1A5C5A1^C3A15G1G15'",
",",
"seq",
")",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"start",
"-",
"b",
".",
"start",
")",
")",
".",
"toMatchInlineSnapshot",
"(",
"`\n Array [\n Object {\n \"altbase\": \"G\",\n \"base\": \"A\",\n \"length\": 1,\n \"start\": 6,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"C\",\n \"base\": \"A\",\n \"length\": 1,\n \"start\": 11,\n \"type\": \"mismatch\",\n },\n Object {\n \"base\": \"1\",\n \"length\": 0,\n \"start\": 31,\n \"type\": \"insertion\",\n },\n Object {\n \"altbase\": \"G\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 32,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"A\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 34,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"C\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 40,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"A\",\n \"base\": \"C\",\n \"length\": 1,\n \"start\": 46,\n \"type\": \"mismatch\",\n },\n Object {\n \"base\": \"*\",\n \"length\": 1,\n \"start\": 48,\n \"type\": \"deletion\",\n },\n Object {\n \"altbase\": \"A\",\n \"base\": \"G\",\n \"length\": 1,\n \"start\": 52,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"G\",\n \"base\": \"G\",\n \"length\": 1,\n \"start\": 68,\n \"type\": \"mismatch\",\n },\n Object {\n \"altbase\": \"G\",\n \"base\": \"G\",\n \"length\": 1,\n \"start\": 70,\n \"type\": \"mismatch\",\n },\n ]\n `",
")",
";",
"}",
")",
";",
"test",
"(",
"'clipping'",
",",
"(",
")",
"=>",
"{",
"expect",
"(",
"getMismatches",
"(",
"'200H10M200H'",
",",
"'9A'",
",",
"'AAAAAAAAAC'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"cliplen",
":",
"200",
",",
"base",
":",
"'H200'",
",",
"length",
":",
"1",
",",
"start",
":",
"0",
",",
"type",
":",
"'hardclip'",
"}",
",",
"{",
"cliplen",
":",
"200",
",",
"base",
":",
"'H200'",
",",
"length",
":",
"1",
",",
"start",
":",
"10",
",",
"type",
":",
"'hardclip'",
"}",
",",
"{",
"altbase",
":",
"'A'",
",",
"base",
":",
"'C'",
",",
"length",
":",
"1",
",",
"start",
":",
"9",
",",
"type",
":",
"'mismatch'",
"}",
",",
"]",
")",
";",
"expect",
"(",
"getMismatches",
"(",
"'10S10M10S'",
",",
"'9A'",
",",
"'AAAAAAAAAAGGGGGGGGGC'",
")",
")",
".",
"toEqual",
"(",
"[",
"{",
"cliplen",
":",
"10",
",",
"base",
":",
"'S10'",
",",
"length",
":",
"1",
",",
"start",
":",
"0",
",",
"type",
":",
"'softclip'",
"}",
",",
"{",
"cliplen",
":",
"10",
",",
"base",
":",
"'S10'",
",",
"length",
":",
"1",
",",
"start",
":",
"10",
",",
"type",
":",
"'softclip'",
"}",
",",
"{",
"altbase",
":",
"'A'",
",",
"base",
":",
"'C'",
",",
"length",
":",
"1",
",",
"start",
":",
"9",
",",
"type",
":",
"'mismatch'",
"}",
",",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'md generation'",
",",
"(",
")",
"=>",
"{",
"const",
"query",
"=",
"`CACACTAGCCCGTCAGCGAACGCGTGCGCGGCCGCTGCCCTGCAGCGAATGGGGCTAACGACGCATAAAACGCCCGCATA\nACCACTCGAGCTACGGGAAATTCACTCAGGCTGTGTTGCTTCGACGTGTAGATCTCATTCACATATCATAATACCTCCAA\nGACCAACGGCTGCTCATGACTCTCTTACCTTGTTAGGGACATTTCGGCACTAGGGAAGAGCTGAGGACTTTGAAAACGTC\nGATAAAACCATCGCGGGAACTAGCCTGCGTTAGAACTCCCATATTTTACGGGTCGCAAGCTTGAGAGTCCTGTCCCGGCA\nGCTGCAAGTGCTACGGCAGGAGGGGATCTACCATAACGTGCAGTAAGACCCCTGCCCGTAATGAGGCGGTACTCGTCTCT\nAATCGTCAGTAGTTACTATGTCCGAGGACGTGCCTCTACGAGTTGAACTCTGGCTAGGCCCACCTGTCCGCGCCACTGCT\nCGGGTACCCCATCTGCTTTATCCAACTTCACCTGCGCCTTAACGGAATCTCTGGTTGCCAGTCATCCGATGGTCATTAAG\nCAGCGTGGTACATCGTAAGCCAATACTTCAGGGCGCCTAGCCATATTCCCAGCCAAGCGGCTGCATAATTACAAGCGCTG\nGCACGACTAATCGATCCCACGAAGCCTGGGAGATGACCCTAGCCCTAAAAGTCTGCCCTCGTGACCTATCTGCCACGTGA\nTACTTGATATATTTGTAATGAGCGGAGCAGGGTAGATGACTAATATACAGGGTCGTCTAGGTTTGCACGAATGCAGACAT\nCATCCGCGCAAGGCCCGGACGGCTGTACTCACACAAGCGTAGGTCTCCATTCTCCCTCAGCCAGCACTAAGATTCCCACG\nTGACCAGGGCGACGGGCCCTCAGCCAAACGTATACCTTGATATCTACTTAAGTCAAGGTTGACTCCGAACCCTATGGGTC\nGGTGCCGTTAACAGGGAGTCTATAGTCTCGGCGTTTCCATTGTTGTTTCAAACTCCTGCTTATAAGGGTGAAAGCGCTGG\nAGGGCATAGTTTATGCCCAAAGTTGCGCGTAGATCCGTCGGGATAGTGTGCTATAATAAGGACTGCTCGAGGTGTAGGCG\nGTAACGGCTCCCGCCTTCAGTAGGGCGCGGAACTCGAATCGGAGTTACAGGACTTGACCCGAGTCATATCCAAGTTTATG\nTTAGCCCGATCGGATCTCGGATGCTCGTATCTGCGACGAGGTCGAAGACGGACGAAATACGATTCAACCGCGCGAACCAT\nTGCATCTAACCTTTAGCCTCAATGGGTGTTAACGTGGTGGTGCTCACTGGTCGTACTCTTTTGTGCAACTACTTCCAGTA\nTGAACAACAGTCAAGTTGCGACATGATGCCTCTTTACGTGATTCCCACAGTTTCCCACCTCAGGATGCTTGCTTCTTTAG\nCTAAACCCAATAGTTATGGCGGCCACCTTCAGACGTCCCACGAGGACGGCTATGACGTTGCTAAACGCATTCGCCGCCGA\nAAGGTAGCGCTAACGAGTTCTGTAGAGTTTGTTCCGGGCCAGATCTCCAGGATGGTCGCAACAACGCAGTACCGGTTTTA\nTACTGGTGAACCCTCTACCTGTTATTAAGTTTACAGCGTTGTCCTACGGTACATGGTCGTGAGTACTCGCGTAGTCAAAC\nGCCAGGACTAGCAGCGAGAATTATTGGTCGCGATACTTACTACAATAACTTACCCGATATTGACAGTGCAGGGTTGAAAG\nAGATGGACAGTTGAATATCTACTTTTGACGGAATCCTCAAAACTCCCTCCACCTACAGGTAACGGCCCTGTCCGGGACCG\nCTTTCTTGCATATATTGGTTTCCACAGAGCGTATCTAAGTTAGTCTCTTGACCGTTCACCGACTCTAGGGCGACTCGTTA\nTCGCCCTCCGAAACGATGCTATTCGTTACCTCAATGATGACAGTTGGTCAGACGTAAGTGATCCCAATCTCACTCGTGCC\nTTGTCCACCAGTTCCGTGAAGACGAAGCAATACGCGGAATACGTGGCTTCGTAATATTTTGACGATATGGGGCTGGGACG\nCTCAAGACTTCCAGTGACAAACAAAGTGAAGAGCAACTTGCATCCCTCATCATGACACTATTACCAGAGTAGCCGATGGA\nTTAACGCTAATTTGGTCAGGGCAGCTATCGCATCCCGCAGGTGTAGGCGGAGACTTTTTTTTTTTGCGAGTTGACAGGTA\nATCTCACGGTATAAGCACGGTTATTTACGCAAGCGACGTCCCTGGGAGAATCCGCCCACGGTAGGACCCCATAATCCATA\nAATACTGCGGTCGAAACCGTTCATATCGTGATCAGGAACCTGCTTTCTAGGGATGCGGTCCCCGCATTCAGAGTTCTACT\nTTGGCCAGCGTGAGACGTTAACAACCCACTTACGCGGTACATTGAAGTCGTTCGAGTCCAGTGTGACCTGTGTACCGAAT\nAACGTGTAGACCAGCGCGTCTACGACTTAGCGCGGCTCCACTCCAAAGCACCTTTTGGGACTTTGCCAACGAGCCTGTTG\nGCCGTTAAGCGGTATTTGCACAAACTAGATCACCCTAGTGTCGGTAACCGACTCACCCTATTGGGATCATCGTGAGCTCG\nAAACACTAGGCGGACCAACGGATGAGCATTTGATTCGGCTCTACAGAGCTTGTCGCCAGAGAAAAACTGTGGCAACTCTA\nCGCTCGCGGGGAATTGACTTTAGCGGCCCCCTAGACAGGTGTGGGACACCTAGTCTAGATTCACGTCCTACACGACATAA\nCAGCACCTTCCTGGCCAGCCCAGAAATATGTACCTGGACGACACTCCAGTCCTTCCGACGCCATAATGTGAGCCGTAGCG\nCCCACGACGATCAACGAGGAGAAATTTACAAAGGCTAGTGTGAATGCTACGTCGTCTACCCATTGCTCCATCGAAACGAA\nCGCAACGCACAGCATACAACGTTCTACCATGCCGGAGCGCGGATCCTCAAGTACAGAAAACAGTAGGTCTAAACATGATC\nCGAACAAATCGGTAGGTTTACACAGCTACCTCCGTCCATATGGCGTACTGCATCGATCGTGCTTACTACGGTCATCGCCG\nGCCCGCGATGCACGTACGAAGGAATACCCTGTCTGCCCCCGCGCGAGCTTACGCTGTCTCGCACATACCGAGCACTGTCG\nCTTCGAAGCTAAACTATGAGCCCAGCCGAGCTCCTTATGGCCGCAACGCTGGTGCGCCAGTCTGATAAATTCCACACGTA\nCACGATCCTCGTGTAAGATCTCGGGCAGTAGTAAGTCATTATCACATGGTTAGGAGATGATAGAATACATGGGTTCTGGT\nAGCTACAACACAGGATTTGTGAACCCTTGGCCCTTTGGTGAGTGCTACAATAAAATTCTCCGTATGGGACTAACCTAAAG\nGGTGCTGCGATTGACTTCCCGGCCCAGGTTAGATGTCCATATCATTCATACATTCCCGACCGACCCAATGCCTAAATCAG\nAGGCGCCTTAGCTAGTTCTTGTATGTGTGCCACGATCCAGGCCACGCAGACACGACCCCTCGGCGAGTGATCACCATTAC\nCGGATTTGGCATCGAAGTCTTTTTCTGGGAAGTTAGCCAGTTTGGTGTGCGGTGCTTAGAATCTTATTCCCAGTCAAACG\nCCCCTGAGGACGAATTGCTATACCCTAGTTGCCACGCCGGAACCATCTTCGGGAGAGTAGACAAATCCGAGTTAGATATG\nTTAGCGTCTTCGTGGAGTCTGAAATGTATCACTTCTACCAGCAGAATACGCGAATGTCTGTTTGCCCTGGATGAGCGGAA\nTTGGCTTAAAAGCACAGACTACGAGCATTTTGAGTACGGTTCCATATCGCGATGTAATTACCTATACTAGGTTATCGCTA\nGTACGAATAGCGAAGTACAGTGTAGCAGGCCCTTTGTTAGCAAGTTGCTCTAAACAGTTGTCAATACGTAGGCACAATAG\nTGCGATATCTTCCTAAATCCGGGAAGCCATGGCGCTGGGCAGAATATCACATACGGAATAATCAACCTCCATATTTGGTT\nCGTTTTACTCGATGAGTGCCCCTTGCTTGAGACGAGCGTTCTGAGTTGATGGCATGTCGAAAGGTTTACGCGGTGAGTAG\nAGCACTCTTGACCCCTACAGATCGGAATCCTCGGAGGTAGGACAGTTGGAACTTCACAGTTAACCTTTGTTCGATTGCAT\nGAAGGTTGTGTTCTGGGAGTAGGCTCCCAAGGTAGCGGTTCATGCCTGGGGGCAGCCCTAAGTTTGTATATATGTGAGTT\nTGCGTCTGAACACATTATAGCATGAGGAAACGTAAGCTTTCTGGAGGGATCTTCTAAAGCCAGGTATCGCCCGCTACGAT\nGCCGGAGCGCAGGGTGGATTCACAGCTACCTCGTGCCTCAAAGGCTTAAGGCTAATCCATAGCAACAGTGCGAAAGGACG\nTCCTTTCAGATTTCGAAAGGTGCTGACACATACAAGGGTCAGGGCGGTCCTACCCTTCTGATGTCCCTACCTGGTTTTTT\nAGCAAGGGTCAAGGCTAGGCTTATACTCCCGAACGCTTTAAACATCTATTCCCACCCCTGACGGGGGGAAGTTGCCGCGT\nTAAGTATAAGAATAAGATTTAACAGTACACTTTAGGTTCCTCTTCCGCGAGCCGTCATACAGCACCGAGCGCCGTTGAAA\nCGCAATTAACGCGTATTTGTCGCTGCGAAAAAAAAACGCTCGCCAGCATATTGGAGTGTCGACTTGAAATATTGAACAAC\nACCGCATATCAAGACGAATAGTAGGGCTTCACTACCTCCACCTGACGGCCCTAGGACTTATACTCGAAAAAGACCTTCCA\nTCACGATGTCCCTTACCGGCGAGAGTGCTATAATACGCATGAATAGCAGATCTTGCCGTCGCTGAGTGTCACCCAGGGTT\nGCTCCCAGAAAGAGATAGGGCGGAGAGCCATCGACAGCAGCTCTCGATCTAGGTGGTAGCAGGCTAAGGAGTCGTGTCGT\nCGCGCCCGAGTTGGAACCATTATCGATGTACATCAATGCAGTGAATGATGCTGATAGACTCGGGAGTTTGCCTCAAAACC\nCCAGAGTTACGTAGAAGACGCAGGTCTATTAGTTAGAAGGAGTCAGTATTGGCCTTTGAAAGATCTTATGCTCATGCCCT\nAATCGTAGTTAAACGGCGAATCCGTGGAAGGCCAATCTGGCCGGTTTTGACCCCCGGACTCTTAAGACGTCCAATGTGGC\nTAGACATAAGTCAACGAATTACCTATACCGAGGGCGGGAACCGGCCAATTTATTACGAGAGCACGAGAGCCTTGTAGCGA\nCCCAGCACACTAGTCCTCGAGTCCCTCTCATCCTGAGACGTAGAATAGCATATACCGCCTAGGAGAGAATGAGCGCGTCT\nAGGCTTCCGTCGCCCTCTCCGTCGTCTCGGGTGAACCGTAAGTCCTTCCGCATTCCCTTACCTCAAGCGCGTTGGTGTGA\nAGTGGTATTGAGGCCCAGTCTCTATAACGCATATACTTGTGCACTCTATTACTTACCATGGGAACCAATGGCACTCTACG\nAATCATGCTCACAGCTGAGCAACGGTGCTGCTCACCAATTACATATGAGCTCGTGGATTTAGCGTTGGAGCGGAACGATG\nAATTTCCATCTGTTCGCGCGCATCCACTAATCCAATATACGGTTATCCCGAGCGCTACTAGTGTCTGACCGGGTTGGTAG\nCCGAACCCTTTTGCAAGCCGCGCTTAGTGGATGTTGAAGTGGGAGTGATAAGCTTAAGCCGCCACGTTCGGGGGGGACTC\nGTTTATATTGGTGCTGGAATTACGAACGGCGTGATTCGTAGTCGGCCCTAATCGGGCGCGACCGAACACATGTAGTACTG\nTCGAGGCGGTTTAAACCCCCACAGTAGGTACTCTATCAGCAGAATTATGCTAGAAAGTTTCACACACAACTTTCCGCATG\nAGGCTCATGCGGAGCGTCGCACTCCCAATGGCCAGTGCCGGTAGTCGATGTTTGGTCGGAACTTAGTTCCTTCGGAATAA\nCGAACCGGATTTAAAAGAGCCTCAGGAGAACCTAAACGAATCCGTACGCATCTTGCCCAAGGTTGCTGAGCCTCGTCGCC\nTTTCTCAGTTCCACCTACATTAATGCAATGCGTTCGAAGCTTGACCTGCAAACAGGAATCAAGTTCAGACAGAGTGCAAG\nAGTTTCGCAGATAATTGGGAGACGACCCACTTGGATATAGGTGCTTTTTGAGATGTGTGTACGACCGTCCTTTCGAGCAT\nACCTACGGGTTACAATTGCTCCGGTAAGTCAGGCACATAGAAAACATAGCCACTACTGAGGTGTATCAAGATTACCTCAT\nGTAGACTTGAAATACAGCACATCCGCTTTAAGCTTAACCGATGTAGAACAGCATTTTGGGCGGCGTTGACAGCGTGGCCC\nGCTCACCGGTTTGCTCCCTTCTCACCAAATAACCAATGAGCACGACTTTGGTGACTGGACTGCCAGATGACGGCTACAAC\nCCGTTTTTGGTTCCGAATTCCGCTCTAACTCAACTAACATCCATACTATATGCGCCAGGATATTCTCGCGGTTGGACCCC\nCCTGCCAATTCGGGTTAAAACCACTCCGCACCCCCATGTAGGGGAGCTGGGCCCGCATTACAATATGCGAATCGATCCCG\nCAGATGGACGCTCACAAAATTCAGTCCTTTCACGACTCCGCTCATATAGACGGTAGAAGGGATACTGAGGCTGTTAGATA\nGGACGTCGAGCATGGCGTAGACGAGCGCAACCGGGTCGAAGGCCCGCATTACCGTGACACCCAGTTGAAAGGATTTACAC\nTGCTTCATATCGATATTTACCACTTTGTAATTGGGAGCTCAAAGACCTAAGTCAACACGGACCATCATACAGGGTCGCCA\nGTAAATGAGAAGCGCTGTCTGTGCCATGGAGAAGCGCTGCTACAGCACACAACGAACAATCTGCATGTGAAGGAGGGTGC\nCTCTTTTGGGATGAGCCTACGGGGATGTGTATCCCATGCCCTGTAGGCAGTTGGGACTAGCGCCGAGCTAATCTAGTAAC\nTAAGGCGCCAGCCGCGGCTGTTTGCCGAAGTCGTGCTGACTGCTGTACAACGAAGGGCGAGCGTGTTAACATGCCTACAC\nGTTGACCTAGACTAGTCCAAGTTCTGAAAGTCCCATTAGGTCCGGGTAGTACAGTCCTCGGTTCCAGTCCCATCTTGTGC\nCGCCAAGGACAAGCGATCATCAAAATCTGACTGAGTAATTGAATCAGCTACCTCAGACCACATTCAGCTCTCGGTAAACA\nTGCGATGGCTTGTGGTTGCACCGTAAAAGGGGGAAGCCCATCCATCCTGTAACACCACAATCGCGCGTAGCTTAATAACG\nGCTCCACCATTAGAATTCGATCGAGAGACACTGGTTTCAAGAGCCTTCCCTTTTGCTTTAGTGGGCCAAATCGCAACCCT\nGCTCCCCTCCCTTACGCCTTATACACTTCAGTGCAAATTCATCGCGTTCGAGCGAACAACCTGGACTTCTGTTGTACGTA\nGTCCACGGGGGCTTTATTCATTATAGAAAGCCCCCTACTGTACACCGTTTATCATGGTTCACATCATGAGCTGATCACCT\nAGAGAGTCGTCATGCACATTCGCACTAACAAGGACATATGAGTAACCGGGAGAG`",
".",
"replace",
"(",
"/[\\r\\n]+/gm",
",",
"''",
")",
";",
"const",
"target",
"=",
"`cacactagccccgtcagcgacggtgcgcggccgctgccctgcagcgaatggggctaacac\ngcataaaacgcccgcataaccactcgagctacgggaattcactcaggctgttgcttcgac\ngtgtagtctcattacataatcataatacctccaagaccaacggctgctcatgactctctt\naccttgttagggacatttcggcactagggaagagctgaggactttgaaaacgtcgataaa\naccatcgcgggaactagctgcgttagaactccatattttacgggtcgcaagcttgaggtc\nctgtcccggcagctgcaagtgctacggcaggaggggatctacctaacgtgcagtaacgag\ncccctgcccgtaatgaggcgtactcgtctctaatcgtcagtaagttactatgtccgagga\ncgcctctacgagttgaactctggctaggcccacctgtccgcgccctgctcgggtacccca\ntctgcttatccaacttcacctcgccttacggaatctctggttgccagtcatccgatggtc\nattaagcagcgtggtacatcgtagccaatacttcagggcgccagccatattcccagccaa\ngcggctgcataattacagcgcctggcacgactaatcgatcccacaagcctggtagatgac\nccttagccctaaagcgccctctgacctatctgcacgtgatacttgattatttgtaatgag\ncggacagggtagatgactaatatacagggtcgtctaggtttgcacaatgcagacatcatc\ncgcgcaaggcccggacggctgtactcacacagctagctccatctccctcagcagcactaa\ngattcccacgtgaccagggcgacgggcctcagccaaacgtatccttgatatctacttaag\ntcaaggttgactccgaaccctatgggtcggtgccgttaacagggagtctatatctcggcg\nttccattgcttgtttcaaactcctgctataaggtgaaagcgctggagggcatagtttatg\ncccaaagttgcgcgtagatccgtcgggatatgtgctataataaggactgctcgaggtagg\ncggtaacggctcccgccttcagtaggcgcggaactcgaatcggagttacaggacttgacc\ngagtcatatccaagtttatgttacccgatcggatccggatgctcgtatctgcgacgaggt\ncggaagacggacgaaatacgattcaaccgcgcgaaccattagcatctaacctttagcctc\naatgggtgttaacgtggtgggctcactcggcgtactctttgtgcaactattccgtatgaa\ncaacagtcaagttgcgacatgatgctcttacgtgattcccacagtttcccacctcaggat\ngctttctttagctaaacccaatagttatggcggcaccttcagactcccacgaggacggct\natgacgttgctaaaccattcgccgccaaaggctagcgctaacgagttctgtgagtttgtt\nccgggccagatctccaggatggtcgcaacaacgcagtaccggttttatactggtgaccct\nctacctgttattaagttacagcgttgtcctacgtacatggtcgtgagtactcgcgtagtc\naaacgccaggactagcagcgagaattattgtcgcgatacttactacaatacttacccgat\nattgacgtgcagggttgaaagagatggacagttgaatatctattttgacggaatcctcaa\naactccctccacctcaggtaacggccctgtccgggaccgcattcttgcatatattggttc\nccagagcgtatctaagttagtctcttgaccgttcaccgactctagggcgactcgttatcg\nccctccgaaacgatgctttcgttacctcaatgatgacaggctgtaacgtaagtgatccca\natctcactcgtgccttgtccaccgttccgtgaagacgaagcaatacgcggaatacgtggc\nttcgtaatattttgacgatatggggctgggacgctcaagacttccatgacaaacaaagtg\naagagcaactgcatccctcatcatgatcactattaccagagtagcgatggataacgctaa\ntttggtcagggcagctatcgcatcccgcaggtgtaggcggagactttttcttttgttgcg\nagttgacaggtaatctcacggtataagcacggttatttacgcaagcgacgtccctgggag\naatccgcccacgtaggaccccataatccataaatactgcggtcgaaaccttcatatcgtg\nacagaaccgctttctagggatgcggtccccgcattcagagttctactttggccagcgtga\ngacttaacaactccacttacgcggtacattgaagtcgttcagtccagtgtgacctgtgta\nccgaataacgtgtagaccagcgcgtctacgacttagcgcggctccactccaaagcacctt\nttgggactttccaacgagcctgttggccgttaagcggtatttcacaaatagatcacccta\ngtgtcggtaaccgactaccctattgggatcatcgtgagctcgaaacactagaggcggacc\naacggatgacatttgattcggctctacagagcttgtcgccagagaaaaactgtggcaatc\ntacgctcgcggggaattgactttagcggcccctagacaggtgtgggacactagtctagat\ntcacgtcctacacgacataacagcaccttcctggccagcccagaaatagtacctggacga\ncatccagccttccgacgccataatgtgagccgtagcgcccacgacgatcaacgaggagaa\natttacaaaggctgtgtgaatgctacgtcgtctaccattgctcatcgaaacgaacgcaac\ngcacagcatacaacgtttaccatgccggagcgggatcctcaagtacagaaaacagaggtc\ntaaacatgatccgaacaaatcggtaggtttacacagctacctcgtccattggcgtactgc\natcgatcgtgcttactacggtcatgccggcccgcgatgcacgtacgaaggaataccctgt\nctgcccccgcgcgagttacgctgtctcgcacataccgagcactgtcgttcgaagctaaac\ntatgagcccagccgagctccttatggccgcaacgctggtgcggccagctgataaattcca\ncagtacacgatcctcgtgtaagatctcgggcatagtaagtcatttcacatggttaggaga\ngatagaatacatggttctggtagctcaaccaggatttgtggaacccttggcccttggtga\ngtgctacaataaaattctccgtatgggacaaccaaagggtgctggatgtgacttcccggc\nccaggttagatgtccatatcattcatacattgcccgaccgacccaatgcctaaatcagag\ngcgccttagctagttcttgtagtgtgccacgtccggccacgcagacacgaccctcggcga\ngtgatcaccattaccggattggcatcgaagtctttttctgggaagttagccagtttggtg\ntgcggtgcttagaatcttattcccagtcaaacgcccctgggacgaattgctaaccctagt\ntgccacgccggaaccatcttcgggagagtagacaaatccgagttagatatgttagcgtct\ntcgtgagtctgaaatgtatcacttcaccgcagaatacgcgaatgtctgtttgccctggac\ntgacggaattggcttaaaagccgactagagcattttggtacggttcctatccgcgatgta\nattacctatctaggttatcgctagacgaatagcgagtacagtgtagcaggccctttgtta\ngcaagttgctctaaacagttgtcaaaacgtaggcacaatagtgcgattcttctaaatccg\nggaagctcatggcgctgggcagaaatatcacatacgggaataatcaacctccattttggt\ntcgttttactcgatgagtgccccttgcttgagacgagcgttctgagttgatggcatgtcg\naaaggtttacgcggtgagtagagcactttacccctacagatcggaatcctcgaggaggac\nagttggaacttcacattaacctttgttcgattgcatgaaggttgtgttctgggagtaggc\ntcccaaggtagcggttcatgctgggggcagccctaagtttgtattatgtgagtttgcgtc\ntgaaactacatttagcatgaggaacgtaagctttctggagggatcttctaaagccaggta\ntcgcccgctacgatgccggagccggtggttcacagctacctgtgctcaaaggcttaaggc\ntaatcatagcaacagtgcgaaaggacgtctttcagatttcgaaaggtgctgacacaacaa\ngggtcagggcggtcctacccttctgattccctacctggttttttagcaagggtcaaggct\naggcttatactcccgaacgctttaaacactatcccacccctgacggggggaagttgcgcg\nttaagtataagaataagatttaacagtacactttaggttcctcttccgcgagccgtcata\ncagcaccgagcgccgttgaaacgcgattaacgcgtattgtcgtgcgaaaaaaaaacgctc\ngccagcatattggagtgtcgacttgaaatattgaacaacaccgcatatcaaggacgaata\ngtagggcttcactacctccacctgacggccctaggacttatactcgaaaaagaccttcca\ntcacgatgtcccttaccggcgagagggctatatacgcatgaatagcagatcttgccgtcg\nctgagtgtcacccagggttgctccagaaaggagatagggcggagagccatcgacagcagc\ntctcgtctaggtggtagcagctaaggagtcgtgtcgtcgcgccgagttggaacattatcg\natgtacatcaatgcagtaatgatgctgatagactcgggagtttcctcaaacccagagtta\ncgagaagacgcaggtctatcagttagaaggagtcagtattggcctttgaaagatcttatg\nctcatgcccaatcgtagttaaacgcgaatcgggaaggccaatctggcggttttgaccccc\nggactcttaagacgtccaatgtggctagacataagtaacgaattactctataccgagggg\ncgggaaccggccaatttattacgagagcacgagagccttgtagcggccagcacactatcc\ntcgagtccctctatcctgagacgtagatatacatatacgcctagagagaatagccgtcta\nggcttccgtcgccctctccgtcgttcgcgtgaaccgtaagtcttccgcattcccttcctc\naagcgcgttggtgtgagagtggtattgaggcccagtcttataacgcatatacttgtgcac\ntctattacttaccatgggaaccaatggcactctcgaatcatgctcacagctgagcaacgg\ntgctgctcaccaattacatatgagtcgtggtttagcgttggagcggaagatgaatttcca\ntctgttcgcgcgcatcactaaccaatatacggttatcccagcgctatctagttctgaccg\nggttggtagcgaacccttttgcaagccggcttagtggatgtgaagtgggagtgataactt\naagccgccacgttcgggggggactcgtttatattggtgctggaatacgaacggcgtgatt\ncgtagtcgccctaatcgggcgcgacaacacatgtagtactgtcgaggcggtttaaaccca\ncagtaggtactctatcagcagaattatgctagaagtttcacaacaactttccgcatgagg\nctcagcggcagcgtcgcactcccaatggccagtgccggtagcgatgtttggtggaattag\nttccttcggaatacgaaccggatttaaagagcctcggagaacctaaacgaatccgtacgc\natcttgcccaaggtgctgagccttgtcgcctttctcagttccacctacattaatgcaatg\ncgttcgaagctctgaccgcaaacaggaatcaagttcagacagagtgcaagagtttcgcaa\ntaattgggaacgacccacttgatataggtgcttttagagatgtgtgtacgaccgtccttc\ngagcatacctacgggttacaattgctccggtaagtcaaggcacatagaaaacatagccaa\nctgagagtgtatacaagattacctcatgtagactgaaatacacacatcgctttaagctct\ncaaccgatgtagaacagattttgggcggcgttgacagcgtgcccgctcaccggtttgctc\nccttctcaccaaataaccatgagacgactttggtgactggactgccagatgacgggctac\naaccgttttggttccgaattcgctctaactcaactaacatcatactatatgcgccaggat\nattctcgcggttggacccccctgccaattcgggttaaaaccactccccccatgtagggag\nctgccgcaattacaatatcgacgatcccagatggacgctcacaaaatatcagtcctttca\ncgatccgctcatatagacggatgaagggactgaggctgttagatagtgacgtcgagcatg\ngcgtagacgagcgcaaccgggtcgaggcccgcattaccgtgacacccagttgaaaggatt\ntacactgcttcattcgatatttaccactttgtatgaggagctcaacctaagtcaacacgg\naccatcatacaggtcgccagtaatgagaaggctgctgtgccatggagaagcgctgctaca\ngcacacaacgaacatcttgcaatgtgaaggagggtgctcttttgggatgagcctacgggg\natgtgtatccctgccctgtaggcagttgggacttagcgcgactatctagataactaaggc\ngccagccgcggctgtttgccgaagtcgtgctgatgctgtacaacgaagggcgagcgtgtt\naacatgctacacgttgacctagactagtccaagtctgaaagtcccaatttaggtcgggta\ngtacagtcctcggttccagtcccatgttgtgccgacaaggacaagcgatcatcaaatcga\nctgaaattgaatcagctacctcagaccacattcagctctcggtaacatgggaggcttgtg\ngttgcaccgtaaaagggggatagcccatccatcctgtaaacctacaatcgcgcgtagctt\naatacgctcacattagacattcgatcgagagacctggtttcaagagccttcccttttgct\nttagtgggccaaatcgcaaccctgctcccctcccttacgccttatacacttcagtgcaaa\nttcatgcgttcagcgaacaactggacttctgttgtacgtagtccacgggggcttattcat\ntatagaaagccccctactgtcaccgttatatggttcacacatgagctgatcacctagaga\ngtcgtcatgcacattcgcctaacaaggacatatgagtaaccgggaggg`",
".",
"replace",
"(",
"/[\\r\\n]+/gm",
",",
"''",
")",
";",
"const",
"cigar",
"=",
"`8M1D10M1I3M1I36M1I37M1I13M2I18M1I7M1I4M1D119M1I13M1I27M1I46M1I13M1D2M1D19M1I22M1\nD19M2I43M1I21M1I16M1I6M1I55M1I20M1I34M1I4M1D23M1I18M1D10M3I8M1I11M1I15M1I17M1I41\nM1I45M1I3M1I3M2I5M1I10M1I35M1I16M1I70M1I8M1I8M1D17M1I5M1I59M1I25M2I29M1I34M1I25M\n1I12M1I26M1D38M1D39M1I17M1I12M1I4M1I31M1I3M1I36M3I30M1I11M1I31M1I36M1I64M1I20M1I\n17M1I57M1I20M1I17M1I36M1I32M1I45M2I78M1I22M2I44M1I83M1I23M1I17M1D17M1I7M1I57M2D8\n1M1I38M1I12M1I2M1I5M1I55M1I8M1D28M1I90M1I32M1I6M1I28M1I33M2D18M1I49M1I30M1I21M1I\n59M1I14M1I5M1I66M1I21M1I8M1I35M1I15M1I23M1I47M1I7M1I35M1I51M1I32M1I54M1D5M1I15M1\nI30M1I12M1I16M1I12M1I13M1I4M1I10M1D13M1I36M1I4M1I11M1I3M1D43M1D49M1I10M1I3M1I16M\n1I28M1I81M1I13M1I72M1I21M1I3M1I31M1D3M1I17M2I7M1I10M1I10M1I3M1D18M1I15M1I10M1I73\nM1I4M1I15M1D15M1D12M1D18M1I91M2I26M1I4M1I20M1I65M1I24M1I20M2D6M1I10M1I60M3I6M1I1\n3M1I3M1I20M1I24M1I28M1I31M1I61M1I3M1I25M1I100M1I6M1I69M1D99M1I51M1I7M1D35M1I14M1\nI22M1I11M1I25M1I26M1I7M2I12M1I67M1I14M1I7M2I16M1I50M1I10M1D9M1D48M1I12M1I15M1I15\nM1D3M1I6M1I6M1I8M1I3M1I30M1I17M1I15M1I20M1D21M1I55M1I51M1I6M1I18M1I27M1I6M1I18M1\nI7M1D5M1I17M1I19M1I12M1I17M1I47M1I23M1I18M2I31M2I36M1I10M1I22M1I4M1D32M1I11M1I4M\n1I16M1I13M1I10M1I38M1I58M1D5M1I42M1I10M1I11M1I37M1I39M1D22M2I6M1D6M1D20M1I9M1I5M\n1I9M2D19M1I23M1I38M1I5M1I30M1D10M2I16M1I20M1I65M4I10M1I8M3I4M1D10M1I3M2I6M2I20M1\nD15M1I25M2I18M1D37M1I49M1I20M2I2M1D8M3I27M1I10M1I9M1I4M1I46M1D15M1I35M1I21M1D5M1\nI3M1I2M1I6M1D43M1I33M1I27M1I13M2D6M1I59M1I5M1I6M2I39M1I9M1I28M1D43M2I5M2I8M1D15M\n1I92M1I6M1I9M1I32M1I28M1I5M1I4M1I10M1I39M1I30M`",
".",
"replace",
"(",
"/[\\r\\n]+/gm",
",",
"''",
")",
";",
"expect",
"(",
"generateMD",
"(",
"target",
",",
"query",
",",
"cigar",
")",
")",
".",
"toBe",
"(",
"'8^C128^A218^C2^G41^A218^C31T9^T10G0C293^C232^G38^A46C1G176A2G1C308A19C99C1G0T0A161^T81^TC4G196^T217^AG590^G117^G67^G43^G327^C21C28^C94A40^T15^A12^G112T155^AC0T75C301G86^G93G63^G169C70G75^T9^G48G41^T59C48^G209^T261^C134T47^C83A60^A28^A6^A43^CT2C112^G10G122^A39^A32A0T24^T108^A98T0C0T3^A71^T16^A116^AT37G8A74G30^T18A0C1T21C4A7^C268G1'",
")",
";",
"}",
")",
";",
"test",
"(",
"'getNextRefPos basic'",
",",
"(",
")",
"=>",
"{",
"const",
"cigar",
"=",
"'10S10M1I4M1D15M'",
";",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"const",
"iter",
"=",
"getNextRefPos",
"(",
"cigarOps",
",",
"[",
"5",
",",
"10",
",",
"15",
",",
"20",
",",
"25",
",",
"30",
",",
"35",
"]",
")",
";",
"const",
"[",
"...",
"vals",
"]",
"=",
"iter",
";",
"expect",
"(",
"vals",
")",
".",
"toEqual",
"(",
"[",
"-",
"5",
",",
"0",
",",
"5",
",",
"10",
",",
"14",
",",
"20",
",",
"25",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'getNextRefPos with many indels'",
",",
"(",
")",
"=>",
"{",
"const",
"cigar",
"=",
"'10S4M1D1IM10'",
";",
"const",
"cigarOps",
"=",
"parseCigar",
"(",
"cigar",
")",
";",
"const",
"iter",
"=",
"getNextRefPos",
"(",
"cigarOps",
",",
"[",
"5",
",",
"10",
",",
"15",
"]",
")",
";",
"const",
"[",
"...",
"vals",
"]",
"=",
"iter",
";",
"expect",
"(",
"vals",
")",
".",
"toEqual",
"(",
"[",
"-",
"5",
",",
"0",
",",
"5",
"]",
")",
";",
"}",
")",
";",
"test",
"(",
"'getModificationPositions'",
",",
"(",
")",
"=>",
"{",
"const",
"positions",
"=",
"getModificationPositions",
"(",
"'C+m,2,2,1,4,1'",
",",
"'AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA'",
",",
"1",
")",
";",
"expect",
"(",
"positions",
"[",
"0",
"]",
")",
".",
"toEqual",
"(",
"{",
"type",
":",
"'m'",
",",
"positions",
":",
"[",
"6",
",",
"17",
",",
"20",
",",
"31",
",",
"34",
"]",
"}",
")",
";",
"}",
")",
";",
"test",
"(",
"'getModificationPositions with unknown (?)'",
",",
"(",
")",
"=>",
"{",
"const",
"positions",
"=",
"getModificationPositions",
"(",
"'C+m?,2,2,1,4,1'",
",",
"'AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA'",
",",
"1",
")",
";",
"expect",
"(",
"positions",
"[",
"0",
"]",
")",
".",
"toEqual",
"(",
"{",
"type",
":",
"'m'",
",",
"positions",
":",
"[",
"6",
",",
"17",
",",
"20",
",",
"31",
",",
"34",
"]",
"}",
")",
";",
"}",
")",
";",
"test",
"(",
"'getModificationPositions with unknown (.)'",
",",
"(",
")",
"=>",
"{",
"const",
"positions",
"=",
"getModificationPositions",
"(",
"'C+m.,2,2,1,4,1'",
",",
"'AGCTCTCCAGAGTCGNACGCCATYCGCGCGCCACCA'",
",",
"1",
")",
";",
"expect",
"(",
"positions",
"[",
"0",
"]",
")",
".",
"toEqual",
"(",
"{",
"type",
":",
"'m'",
",",
"positions",
":",
"[",
"6",
",",
"17",
",",
"20",
",",
"31",
",",
"34",
"]",
"}",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
23109,
null,
23109,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
95,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
95,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660159 | [
"import",
"{",
"GenericFilehandle",
"}",
"from",
"'generic-filehandle'",
";",
"import",
"{",
"Observable",
"}",
"from",
"'rxjs'",
";",
"import",
"SimpleFeature",
"from",
"'@jbrowse/core/util/simpleFeature'",
";",
"import",
"{",
"BaseFeatureDataAdapter",
"}",
"from",
"'@jbrowse/core/data_adapters/BaseAdapter'",
";",
"import",
"{",
"ConfigurationSchema",
"}",
"from",
"'@jbrowse/core/configuration/configurationSchema'",
";",
"export",
"function",
"parseSmallFasta",
"(",
"text",
")",
"{",
"return",
"text",
".",
"split",
"(",
"'>'",
")",
".",
"filter",
"(",
"t",
"=>",
"/\\S/",
".",
"test",
"(",
"t",
")",
")",
".",
"map",
"(",
"entryText",
"=>",
"{",
"const",
"[",
"defLine",
",",
"...",
"seqLines",
"]",
"=",
"entryText",
".",
"split",
"(",
"'\\n'",
")",
";",
"const",
"[",
"id",
",",
"...",
"descriptionLines",
"]",
"=",
"defLine",
".",
"split",
"(",
"' '",
")",
";",
"const",
"description",
"=",
"descriptionLines",
".",
"join",
"(",
"' '",
")",
";",
"const",
"sequence",
"=",
"seqLines",
".",
"join",
"(",
"''",
")",
".",
"replace",
"(",
"/\\s/g",
",",
"''",
")",
";",
"return",
"{",
"id",
",",
"description",
",",
"sequence",
"}",
";",
"}",
")",
";",
"}",
"type",
"FileHandle",
"=",
"GenericFilehandle",
";",
"export",
"class",
"FetchableSmallFasta",
"{",
"data",
":",
"Promise",
"<",
"ReturnType",
"<",
"typeof",
"parseSmallFasta",
">",
">",
";",
"constructor",
"(",
"filehandle",
")",
"{",
"this",
".",
"data",
"=",
"filehandle",
".",
"readFile",
"(",
")",
".",
"then",
"(",
"buffer",
"=>",
"{",
"const",
"text",
"=",
"buffer",
".",
"toString",
"(",
"'utf8'",
")",
";",
"return",
"parseSmallFasta",
"(",
"text",
")",
";",
"}",
")",
";",
"}",
"async",
"fetch",
"(",
"id",
",",
"start",
",",
"end",
")",
"{",
"const",
"data",
"=",
"await",
"this",
".",
"data",
";",
"const",
"entry",
"=",
"data",
"[",
"id",
"]",
";",
"const",
"length",
"=",
"end",
"-",
"start",
"+",
"1",
";",
"if",
"(",
"!",
"entry",
")",
"{",
"throw",
"new",
"Error",
"(",
"`no sequence with id ${",
"id",
"} exists`",
")",
";",
"}",
"return",
"entry",
".",
"sequence",
".",
"substr",
"(",
"start",
"-",
"1",
",",
"length",
")",
";",
"}",
"async",
"getSequenceList",
"(",
")",
"{",
"const",
"data",
"=",
"await",
"this",
".",
"data",
";",
"return",
"data",
".",
"map",
"(",
"entry",
"=>",
"entry",
".",
"id",
")",
";",
"}",
"}",
"export",
"class",
"SequenceAdapter",
"extends",
"BaseFeatureDataAdapter",
"{",
"fasta",
":",
"FetchableSmallFasta",
";",
"refNames",
":",
"string",
"[",
"]",
"=",
"[",
"]",
";",
"constructor",
"(",
"filehandle",
")",
"{",
"super",
"(",
"ConfigurationSchema",
"(",
"'empty'",
",",
"{",
"}",
")",
".",
"create",
"(",
")",
")",
";",
"this",
".",
"fasta",
"=",
"new",
"FetchableSmallFasta",
"(",
"filehandle",
")",
";",
"}",
"async",
"getRefNames",
"(",
")",
"{",
"return",
"this",
".",
"refNames",
";",
"}",
"getFeatures",
"(",
"{",
"refName",
",",
"start",
",",
"end",
",",
"}",
")",
"{",
"return",
"new",
"Observable",
"(",
"observer",
"=>",
"{",
"this",
".",
"fasta",
".",
"getSequenceList",
"(",
")",
".",
"then",
"(",
"refNames",
"=>",
"{",
"this",
".",
"refNames",
"=",
"refNames",
";",
"}",
")",
".",
"then",
"(",
"(",
")",
"=>",
"this",
".",
"fasta",
".",
"fetch",
"(",
"this",
".",
"refNames",
".",
"indexOf",
"(",
"refName",
")",
",",
"start",
",",
"end",
")",
")",
".",
"then",
"(",
"ret",
"=>",
"{",
"observer",
".",
"next",
"(",
"new",
"SimpleFeature",
"(",
"{",
"uniqueId",
":",
"`${",
"refName",
"}-${",
"start",
"}-${",
"end",
"}`",
",",
"seq",
":",
"ret",
",",
"start",
",",
"end",
",",
"}",
")",
")",
";",
"observer",
".",
"complete",
"(",
")",
";",
"}",
")",
";",
"return",
"{",
"unsubscribe",
":",
"(",
")",
"=>",
"{",
"}",
"}",
";",
"}",
")",
";",
"}",
"freeResources",
"(",
")",
"{",
"}",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7003,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
12,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
3,
null,
3,
null,
3,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7003,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
18,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660160 | [
"import",
"{",
"toArray",
"}",
"from",
"'rxjs/operators'",
";",
"import",
"{",
"LocalFile",
"}",
"from",
"'generic-filehandle'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"{",
"getSubAdapterType",
"}",
"from",
"'@jbrowse/core/data_adapters/dataAdapterCache'",
";",
"import",
"Adapter",
"from",
"'./CramAdapter'",
";",
"import",
"{",
"SequenceAdapter",
"}",
"from",
"'./CramTestAdapters'",
";",
"import",
"configSchemaF",
"from",
"'./configSchema'",
";",
"const",
"pluginManager",
"=",
"new",
"PluginManager",
"(",
")",
";",
"const",
"configSchema",
"=",
"pluginManager",
".",
"load",
"(",
"configSchemaF",
")",
";",
"const",
"getVolvoxSequenceSubAdapter",
"=",
"async",
"(",
")",
"=>",
"{",
"return",
"{",
"dataAdapter",
":",
"new",
"SequenceAdapter",
"(",
"new",
"LocalFile",
"(",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox.fa'",
")",
")",
")",
",",
"sessionIds",
":",
"new",
"Set",
"(",
")",
",",
"}",
";",
"}",
";",
"test",
"(",
"'adapter can fetch features from volvox-sorted.cram'",
",",
"async",
"(",
")",
"=>",
"{",
"const",
"adapter",
"=",
"new",
"Adapter",
"(",
"configSchema",
".",
"create",
"(",
"{",
"cramLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.cram'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"craiLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.cram.crai'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"}",
")",
",",
"getVolvoxSequenceSubAdapter",
",",
"pluginManager",
")",
";",
"const",
"features",
"=",
"adapter",
".",
"getFeatures",
"(",
"{",
"assemblyName",
":",
"'volvox'",
",",
"refName",
":",
"'ctgA'",
",",
"start",
":",
"0",
",",
"end",
":",
"20000",
",",
"}",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"expect",
"(",
"featuresArray",
"[",
"0",
"]",
".",
"get",
"(",
"'refName'",
")",
")",
".",
"toBe",
"(",
"'ctgA'",
")",
";",
"const",
"featuresJsonArray",
"=",
"featuresArray",
".",
"map",
"(",
"f",
"=>",
"f",
".",
"toJSON",
"(",
")",
")",
";",
"expect",
"(",
"featuresJsonArray",
".",
"length",
")",
".",
"toEqual",
"(",
"3809",
")",
";",
"expect",
"(",
"featuresJsonArray",
".",
"slice",
"(",
"1000",
",",
"1010",
")",
")",
".",
"toMatchSnapshot",
"(",
")",
";",
"expect",
"(",
"adapter",
".",
"refIdToName",
"(",
"0",
")",
")",
".",
"toBe",
"(",
"'ctgA'",
")",
";",
"expect",
"(",
"adapter",
".",
"refIdToName",
"(",
"1",
")",
")",
".",
"toBe",
"(",
"undefined",
")",
";",
"expect",
"(",
"await",
"adapter",
".",
"hasDataForRefName",
"(",
"'ctgA'",
")",
")",
".",
"toBe",
"(",
"true",
")",
";",
"}",
")",
";",
"test",
"(",
"'test usage of cramSlightlyLazyFeature toJSON (used in the widget)'",
",",
"async",
"(",
")",
"=>",
"{",
"const",
"adapter",
"=",
"new",
"Adapter",
"(",
"configSchema",
".",
"create",
"(",
"{",
"cramLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.cram'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"craiLocation",
":",
"{",
"localPath",
":",
"require",
".",
"resolve",
"(",
"'../../test_data/volvox-sorted.cram.crai'",
")",
",",
"locationType",
":",
"'LocalPathLocation'",
",",
"}",
",",
"}",
")",
",",
"getVolvoxSequenceSubAdapter",
",",
"pluginManager",
")",
";",
"const",
"features",
"=",
"adapter",
".",
"getFeatures",
"(",
"{",
"assemblyName",
":",
"'volvox'",
",",
"refName",
":",
"'ctgA'",
",",
"start",
":",
"0",
",",
"end",
":",
"100",
",",
"}",
")",
";",
"const",
"featuresArray",
"=",
"await",
"features",
".",
"pipe",
"(",
"toArray",
"(",
")",
")",
".",
"toPromise",
"(",
")",
";",
"const",
"f",
"=",
"featuresArray",
"[",
"0",
"]",
".",
"toJSON",
"(",
")",
";",
"expect",
"(",
"f",
".",
"refName",
")",
".",
"toBe",
"(",
"'ctgA'",
")",
";",
"expect",
"(",
"f",
".",
"start",
")",
".",
"toBe",
"(",
"2",
")",
";",
"expect",
"(",
"f",
".",
"end",
")",
".",
"toBe",
"(",
"102",
")",
";",
"expect",
"(",
"f",
".",
"mismatches",
")",
".",
"toEqual",
"(",
"undefined",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
42494,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660161 | [
"import",
"Plugin",
"from",
"'@jbrowse/core/Plugin'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"BoxRendererType",
"from",
"'@jbrowse/core/pluggableElementTypes/renderers/BoxRendererType'",
";",
"import",
"{",
"svgFeatureRendererConfigSchema",
",",
"SvgFeatureRendererReactComponent",
",",
"}",
"from",
"'@jbrowse/plugin-svg'",
";",
"import",
"PileupRenderer",
"from",
"'../../PileupRenderer'",
";",
"import",
"SNPCoverageRenderer",
"from",
"'../../SNPCoverageRenderer'",
";",
"import",
"LinearPileupDisplay",
"from",
"'../../LinearPileupDisplay'",
";",
"import",
"LinearSNPCoverageDisplay",
"from",
"'../../LinearSNPCoverageDisplay'",
";",
"import",
"configSchemaFactory",
"from",
"'./configSchema'",
";",
"beforeEach",
"(",
"(",
")",
"=>",
"{",
"jest",
".",
"spyOn",
"(",
"console",
",",
"'warn'",
")",
".",
"mockImplementation",
"(",
"(",
")",
"=>",
"{",
"}",
")",
";",
"}",
")",
";",
"afterEach",
"(",
"(",
")",
"=>",
"{",
"console",
".",
"warn",
".",
"mockRestore",
"(",
")",
";",
"}",
")",
";",
"class",
"AlignmentsPlugin",
"extends",
"Plugin",
"{",
"install",
"(",
"pluginManager",
")",
"{",
"PileupRenderer",
"(",
"pluginManager",
")",
";",
"pluginManager",
".",
"addRendererType",
"(",
"(",
")",
"=>",
"new",
"BoxRendererType",
"(",
"{",
"name",
":",
"'SvgFeatureRenderer'",
",",
"ReactComponent",
":",
"SvgFeatureRendererReactComponent",
",",
"configSchema",
":",
"svgFeatureRendererConfigSchema",
",",
"pluginManager",
",",
"}",
")",
")",
";",
"SNPCoverageRenderer",
"(",
"pluginManager",
")",
";",
"LinearPileupDisplay",
"(",
"pluginManager",
")",
";",
"LinearSNPCoverageDisplay",
"(",
"pluginManager",
")",
";",
"}",
"}",
"test",
"(",
"'has a type attr'",
",",
"(",
")",
"=>",
"{",
"const",
"configSchema",
"=",
"configSchemaFactory",
"(",
"new",
"PluginManager",
"(",
"[",
"new",
"AlignmentsPlugin",
"(",
")",
"]",
")",
".",
"createPluggableElements",
"(",
")",
".",
"configure",
"(",
")",
")",
";",
"const",
"config",
"=",
"configSchema",
".",
"create",
"(",
"{",
"type",
":",
"'LinearAlignmentsDisplay'",
",",
"displayId",
":",
"'display0'",
",",
"name",
":",
"'Zonker Display'",
",",
"}",
")",
";",
"expect",
"(",
"config",
".",
"type",
")",
".",
"toEqual",
"(",
"'LinearAlignmentsDisplay'",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660162 | [
"import",
"Plugin",
"from",
"'@jbrowse/core/Plugin'",
";",
"import",
"PluginManager",
"from",
"'@jbrowse/core/PluginManager'",
";",
"import",
"SNPCoverageRenderer",
"from",
"'../../SNPCoverageRenderer'",
";",
"import",
"configSchemaFactory",
"from",
"'./configSchema'",
";",
"beforeEach",
"(",
"(",
")",
"=>",
"{",
"jest",
".",
"spyOn",
"(",
"console",
",",
"'warn'",
")",
".",
"mockImplementation",
"(",
"(",
")",
"=>",
"{",
"}",
")",
";",
"}",
")",
";",
"afterEach",
"(",
"(",
")",
"=>",
"{",
"console",
".",
"warn",
".",
"mockRestore",
"(",
")",
";",
"}",
")",
";",
"class",
"SNPCoverageRendererPlugin",
"extends",
"Plugin",
"{",
"install",
"(",
"pluginManager",
")",
"{",
"SNPCoverageRenderer",
"(",
"pluginManager",
")",
";",
"}",
"}",
"test",
"(",
"'has a type attr'",
",",
"(",
")",
"=>",
"{",
"const",
"configSchema",
"=",
"configSchemaFactory",
"(",
"new",
"PluginManager",
"(",
"[",
"new",
"SNPCoverageRendererPlugin",
"(",
")",
"]",
")",
".",
"createPluggableElements",
"(",
")",
".",
"configure",
"(",
")",
")",
";",
"const",
"config",
"=",
"configSchema",
".",
"create",
"(",
"{",
"type",
":",
"'LinearSNPCoverageDisplay'",
",",
"displayId",
":",
"'display1'",
",",
"name",
":",
"'SNPZonker Display'",
",",
"}",
")",
";",
"expect",
"(",
"config",
".",
"type",
")",
".",
"toEqual",
"(",
"'LinearSNPCoverageDisplay'",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660163 | [
"import",
"{",
"createEditor",
",",
"doc",
",",
"h1",
",",
"p",
",",
"strong",
"}",
"from",
"'jest-prosemirror'",
";",
"import",
"{",
"Transaction",
"}",
"from",
"'prosemirror-state'",
";",
"import",
"type",
"{",
"SuggestChangeHandler",
"}",
"from",
"'../'",
";",
"import",
"{",
"addSuggester",
",",
"ChangeReason",
",",
"ExitReason",
",",
"suggest",
"}",
"from",
"'../'",
";",
"describe",
"(",
"'suggester'",
",",
"(",
")",
"=>",
"{",
"it",
"(",
"'should call `onChange`'",
",",
"(",
")",
"=>",
"{",
"const",
"expected",
"=",
"'suggest'",
";",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"param",
")",
"=>",
"{",
"const",
"{",
"exitReason",
",",
"text",
":",
"matchText",
",",
"query",
":",
"queryText",
",",
"range",
"}",
"=",
"param",
";",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"exitReason",
",",
"matchText",
",",
"queryText",
",",
"range",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"matchOffset",
":",
"0",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"insertText",
"(",
"`${",
"expected",
"} `",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"9",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledWith",
"(",
"ExitReason",
".",
"MoveEnd",
",",
"{",
"full",
":",
"'@suggest'",
",",
"partial",
":",
"'@suggest'",
"}",
",",
"{",
"full",
":",
"'suggest'",
",",
"partial",
":",
"'suggest'",
"}",
",",
"{",
"from",
":",
"1",
",",
"cursor",
":",
"9",
",",
"to",
":",
"9",
"}",
")",
";",
"}",
")",
";",
"}",
")",
";",
"it",
"(",
"'supports `textBefore` and `textAfter` `onChange`'",
",",
"(",
")",
"=>",
"{",
"const",
"expected",
"=",
"'suggest'",
";",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"param",
")",
"=>",
"{",
"const",
"{",
"exitReason",
",",
"textBefore",
",",
"textAfter",
"}",
"=",
"param",
";",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"{",
"textBefore",
",",
"textAfter",
"}",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"matchOffset",
":",
"0",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'hello'",
")",
",",
"p",
"(",
"strong",
"(",
"'Hello'",
")",
",",
"' <cursor>friend'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"`@${",
"expected",
"} `",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledWith",
"(",
"{",
"textBefore",
":",
"'Hello '",
",",
"textAfter",
":",
"' friend'",
"}",
")",
";",
"}",
")",
";",
"}",
")",
";",
"it",
"(",
"'supports priority'",
",",
"(",
")",
"=>",
"{",
"const",
"_1",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"_2",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"_3",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'3'",
",",
"onChange",
":",
"_3",
",",
"supportedCharacters",
":",
"/[1-3]+/",
",",
"priority",
":",
"10",
"}",
",",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'2'",
",",
"onChange",
":",
"_2",
",",
"supportedCharacters",
":",
"/[12]+/",
",",
"priority",
":",
"20",
"}",
",",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'1'",
",",
"onChange",
":",
"_1",
",",
"supportedCharacters",
":",
"/1+/",
",",
"priority",
":",
"30",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"_1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"_2",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"expect",
"(",
"_3",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
".",
"insertText",
"(",
"'1'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"_1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"2",
")",
";",
"expect",
"(",
"_2",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"expect",
"(",
"_3",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
".",
"insertText",
"(",
"'2'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"_1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"2",
")",
";",
"expect",
"(",
"_2",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"_3",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
".",
"insertText",
"(",
"'3'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"_1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"2",
")",
";",
"expect",
"(",
"_2",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"_3",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"insertText",
"(",
"' '",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"_3",
")",
".",
"toHaveBeenCalledTimes",
"(",
"2",
")",
";",
"expect",
"(",
"_3",
")",
".",
"toHaveBeenCalledWith",
"(",
"expect",
".",
"objectContaining",
"(",
"{",
"exitReason",
":",
"ExitReason",
".",
"MoveEnd",
",",
"text",
":",
"{",
"full",
":",
"'@123'",
",",
"partial",
":",
"'@123'",
"}",
",",
"query",
":",
"{",
"full",
":",
"'123'",
",",
"partial",
":",
"'123'",
"}",
",",
"range",
":",
"{",
"from",
":",
"1",
",",
"cursor",
":",
"5",
",",
"to",
":",
"5",
"}",
",",
"}",
")",
",",
"expect",
".",
"any",
"(",
"Transaction",
")",
")",
";",
"}",
")",
";",
"}",
")",
";",
"it",
"(",
"'supports regex for character matches'",
",",
"(",
")",
"=>",
"{",
"const",
"expected",
"=",
"'suggest'",
";",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"param",
")",
"=>",
"{",
"const",
"{",
"exitReason",
",",
"text",
":",
"matchText",
",",
"query",
":",
"queryText",
",",
"range",
"}",
"=",
"param",
";",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"exitReason",
",",
"matchText",
",",
"queryText",
",",
"range",
")",
";",
"}",
"}",
")",
";",
"const",
"at",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
":",
"at",
",",
"matchOffset",
":",
"0",
"}",
",",
"{",
"name",
":",
"'whitespace'",
",",
"char",
":",
"/\\s/",
",",
"onChange",
",",
"supportedCharacters",
":",
"/[A-Za-z]+/",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"' '",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"insertText",
"(",
"`${",
"expected",
"}_`",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"9",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledWith",
"(",
"ExitReason",
".",
"MoveEnd",
",",
"{",
"full",
":",
"' suggest'",
",",
"partial",
":",
"' suggest'",
"}",
",",
"{",
"full",
":",
"'suggest'",
",",
"partial",
":",
"'suggest'",
"}",
",",
"{",
"from",
":",
"1",
",",
"cursor",
":",
"9",
",",
"to",
":",
"9",
"}",
")",
";",
"}",
")",
";",
"}",
")",
";",
"it",
"(",
"'should not call `onChange` for the activation character when matchOffset is greater than 0'",
",",
"(",
")",
"=>",
"{",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"exitReason",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"matchOffset",
":",
"1",
"}",
",",
"{",
"char",
":",
"'#'",
",",
"name",
":",
"'tags'",
",",
"onChange",
",",
"matchOffset",
":",
"2",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@ #a '",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"editor",
".",
"insertText",
"(",
"'@a #ab '",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledTimes",
"(",
"2",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledWith",
"(",
"ExitReason",
".",
"MoveEnd",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"}",
")",
";",
"it",
"(",
"'responds to different kinds of exits'",
",",
"(",
")",
"=>",
"{",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"range",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"exitReason",
",",
"range",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"onChange",
",",
"name",
":",
"'at'",
",",
"matchOffset",
":",
"0",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@abc'",
")",
".",
"selectText",
"(",
"3",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"5",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenLastCalledWith",
"(",
"expect",
".",
"objectContaining",
"(",
"{",
"changeReason",
":",
"ChangeReason",
".",
"Move",
"}",
")",
",",
"expect",
".",
"any",
"(",
"Transaction",
")",
")",
";",
"expect",
"(",
"exit",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
".",
"insertText",
"(",
"' '",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledWith",
"(",
"ExitReason",
".",
"Split",
",",
"{",
"from",
":",
"1",
",",
"cursor",
":",
"3",
",",
"to",
":",
"3",
"}",
")",
";",
"}",
")",
".",
"insertText",
"(",
"'@'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenLastCalledWith",
"(",
"expect",
".",
"objectContaining",
"(",
"{",
"range",
":",
"{",
"from",
":",
"4",
",",
"cursor",
":",
"5",
",",
"to",
":",
"7",
"}",
",",
"changeReason",
":",
"ChangeReason",
".",
"Start",
",",
"}",
")",
",",
"expect",
".",
"any",
"(",
"Transaction",
")",
")",
";",
"}",
")",
";",
"editor",
".",
"overwrite",
"(",
"doc",
"(",
"p",
"(",
"'Hello '",
")",
")",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenLastCalledWith",
"(",
"ExitReason",
".",
"InvalidSplit",
",",
"{",
"from",
":",
"4",
",",
"cursor",
":",
"5",
",",
"to",
":",
"7",
"}",
")",
";",
"editor",
".",
"insertText",
"(",
"'@abc'",
")",
".",
"selectText",
"(",
"'start'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenLastCalledWith",
"(",
"ExitReason",
".",
"MoveStart",
",",
"{",
"from",
":",
"7",
",",
"cursor",
":",
"11",
",",
"to",
":",
"11",
",",
"}",
")",
";",
"}",
")",
";",
"}",
")",
";",
"it",
"(",
"'calls the correct handlers when jumping between two suggesters'",
",",
"(",
")",
"=>",
"{",
"const",
"change1",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"exit1",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange1",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"changeReason",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"exit1",
"(",
"exitReason",
")",
";",
"}",
"else",
"{",
"change1",
"(",
"changeReason",
")",
";",
"}",
"}",
")",
";",
"const",
"change2",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"exit2",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange2",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"changeReason",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"exit2",
"(",
"exitReason",
")",
";",
"}",
"else",
"{",
"change2",
"(",
"changeReason",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
":",
"onChange1",
"}",
",",
"{",
"char",
":",
"'#'",
",",
"name",
":",
"'hash'",
",",
"onChange",
":",
"onChange2",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@abc #xyz'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"change1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"expect",
"(",
"exit1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"change2",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"jest",
".",
"clearAllMocks",
"(",
")",
";",
"}",
")",
".",
"selectText",
"(",
"5",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"change1",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"exit1",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"expect",
"(",
"exit2",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"change2",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"}",
")",
";",
"}",
")",
";",
"describe",
"(",
"'Suggest Ignore'",
",",
"(",
")",
"=>",
"{",
"it",
"(",
"'should ignore matches when called'",
",",
"(",
")",
"=>",
"{",
"const",
"change",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"range",
",",
"addIgnored",
",",
"suggester",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"addIgnored",
"(",
"{",
"from",
":",
"range",
".",
"from",
",",
"name",
":",
"suggester",
".",
"name",
"}",
")",
";",
"exit",
"(",
"exitReason",
",",
"range",
")",
";",
"}",
"else",
"{",
"change",
"(",
"range",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"ignoredClassName",
":",
"'ignored'",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@abc '",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"change",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"jest",
".",
"clearAllMocks",
"(",
")",
";",
"}",
")",
".",
"backspace",
"(",
"4",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"expect",
"(",
"change",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
")",
";",
"expect",
"(",
"editor",
".",
"view",
".",
"dom",
".",
"innerHTML",
")",
".",
"toMatchInlineSnapshot",
"(",
"`\n <p>\n <span class=\"ignored\">\n @\n </span>\n </p>\n `",
")",
";",
"}",
")",
";",
"it",
"(",
"'should clear ignored'",
",",
"(",
")",
"=>",
"{",
"const",
"clear",
"=",
"{",
"at",
":",
"(",
"_name",
"?",
")",
"=>",
"{",
"}",
",",
"tag",
":",
"(",
"_name",
"?",
")",
"=>",
"{",
"}",
",",
"}",
";",
"const",
"exitAt",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChangeAt",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"range",
",",
"addIgnored",
",",
"suggester",
",",
"clearIgnored",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"const",
"{",
"name",
"}",
"=",
"suggester",
";",
"addIgnored",
"(",
"{",
"from",
":",
"range",
".",
"from",
",",
"name",
"}",
")",
";",
"clear",
".",
"at",
"=",
"clearIgnored",
";",
"exitAt",
"(",
")",
";",
"}",
"}",
")",
";",
"const",
"exitTag",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChangeTag",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"range",
",",
"addIgnored",
",",
"suggester",
",",
"clearIgnored",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"const",
"{",
"name",
"}",
"=",
"suggester",
";",
"addIgnored",
"(",
"{",
"from",
":",
"range",
".",
"from",
",",
"name",
"}",
")",
";",
"clear",
".",
"tag",
"=",
"clearIgnored",
";",
"exitTag",
"(",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
":",
"onChangeAt",
"}",
",",
"{",
"char",
":",
"'#'",
",",
"name",
":",
"'tag'",
",",
"onChange",
":",
"onChangeTag",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'@abc #xyz '",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"jest",
".",
"clearAllMocks",
"(",
")",
";",
"}",
")",
".",
"selectText",
"(",
"2",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChangeAt",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"clear",
".",
"at",
"(",
"'at'",
")",
";",
"}",
")",
".",
"selectText",
"(",
"3",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChangeAt",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"selectText",
"(",
"7",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChangeTag",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"clear",
".",
"tag",
"(",
"'tag'",
")",
";",
"}",
")",
".",
"selectText",
"(",
"8",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChangeTag",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"selectText",
"(",
"'end'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"exitAt",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"expect",
"(",
"exitTag",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
";",
"}",
")",
";",
"}",
")",
";",
"test",
"(",
"'addSuggester'",
",",
"(",
")",
"=>",
"{",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"{",
"exitReason",
",",
"range",
"}",
")",
"=>",
"{",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"exitReason",
",",
"range",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
";",
"const",
"remove",
"=",
"addSuggester",
"(",
"editor",
".",
"view",
".",
"state",
",",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"matchOffset",
":",
"0",
",",
"}",
")",
";",
"editor",
".",
"insertText",
"(",
"'@'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"insertText",
"(",
"'suggest '",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"remove",
"(",
")",
";",
"jest",
".",
"clearAllMocks",
"(",
")",
";",
"editor",
".",
"insertText",
"(",
"'@'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
".",
"insertText",
"(",
"'suggest '",
")",
";",
"expect",
"(",
"exit",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"describe",
"(",
"'validity'",
",",
"(",
")",
"=>",
"{",
"it",
"(",
"'can register invalid marks'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"invalidMarks",
":",
"[",
"'strong'",
"]",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@<cursor>'",
")",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'abc'",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'can register invalid nodes'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"invalidNodes",
":",
"[",
"'heading'",
"]",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"h1",
"(",
"'@<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'abc'",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'can register valid marks'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"validMarks",
":",
"[",
"'strong'",
"]",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@<cursor>'",
")",
")",
",",
"p",
"(",
"''",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
",",
"}",
")",
".",
"insertText",
"(",
"'abc '",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"jest",
".",
"resetAllMocks",
"(",
")",
";",
"editor",
".",
"selectText",
"(",
"8",
")",
".",
"insertText",
"(",
"'@abc '",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'can register valid nodes'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"validNodes",
":",
"[",
"'heading'",
"]",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"h1",
"(",
"'@<cursor>'",
")",
",",
"p",
"(",
"''",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'abc '",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"jest",
".",
"resetAllMocks",
"(",
")",
";",
"editor",
".",
"selectText",
"(",
"8",
")",
".",
"insertText",
"(",
"'@abc '",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'rejects `invalidMarks` option when covering part of the match'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"invalidMarks",
":",
"[",
"'strong'",
"]",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@'",
")",
",",
"'ab<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'c'",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'should reject `invalidMarks` option not at the start or cursor'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"invalidMarks",
":",
"[",
"'strong'",
"]",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'@'",
",",
"strong",
"(",
"'ab'",
")",
",",
"'c<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'c'",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'accepts `validMarks` only when the whole match is covered'",
",",
"(",
")",
"=>",
"{",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"validMarks",
":",
"[",
"'strong'",
"]",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@<cursor>'",
")",
")",
",",
"p",
"(",
"'@a'",
",",
"strong",
"(",
"'b'",
")",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
",",
"}",
")",
".",
"insertText",
"(",
"'abc'",
")",
".",
"selectText",
"(",
"10",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"4",
")",
";",
"jest",
".",
"resetAllMocks",
"(",
")",
";",
"editor",
".",
"insertText",
"(",
"'c'",
")",
";",
"expect",
"(",
"onChange",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"}",
")",
";",
"test",
"(",
"'should support whitespace characters in `supportedCharacters`'",
",",
"(",
")",
"=>",
"{",
"const",
"exit",
"=",
"jest",
".",
"fn",
"(",
")",
";",
"const",
"onChange",
"=",
"jest",
".",
"fn",
"(",
"(",
"param",
")",
"=>",
"{",
"const",
"{",
"exitReason",
",",
"text",
":",
"matchText",
",",
"query",
":",
"queryText",
",",
"range",
"}",
"=",
"param",
";",
"if",
"(",
"exitReason",
")",
"{",
"exit",
"(",
"exitReason",
",",
"matchText",
",",
"queryText",
",",
"range",
")",
";",
"}",
"}",
")",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'/'",
",",
"name",
":",
"'at'",
",",
"onChange",
",",
"matchOffset",
":",
"0",
",",
"supportedCharacters",
":",
"/[ a-z]+/",
",",
"}",
")",
";",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"'<cursor>'",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'/'",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
".",
"insertText",
"(",
"` abc space ? `",
")",
".",
"callback",
"(",
"(",
")",
"=>",
"{",
"expect",
"(",
"onChange",
")",
".",
"toHaveBeenCalledTimes",
"(",
"13",
")",
";",
"expect",
"(",
"exit",
")",
".",
"toHaveBeenCalledTimes",
"(",
"1",
")",
";",
"}",
")",
";",
"}",
")",
";",
"describe",
"(",
"'checkNextValidSelection'",
",",
"(",
")",
"=>",
"{",
"it",
"(",
"'updates the next selection'",
",",
"(",
")",
"=>",
"{",
"const",
"mocks",
"=",
"{",
"checkNextValidSelection",
":",
"jest",
".",
"fn",
"(",
")",
",",
"onChange",
":",
"jest",
".",
"fn",
"(",
")",
",",
"}",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"invalidMarks",
":",
"[",
"'strong'",
"]",
",",
"...",
"mocks",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@<cursor>'",
")",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'abc'",
")",
";",
"expect",
"(",
"mocks",
".",
"checkNextValidSelection",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"editor",
".",
"insertText",
"(",
"' abcd'",
")",
".",
"selectText",
"(",
"6",
")",
";",
"expect",
"(",
"mocks",
".",
"checkNextValidSelection",
")",
".",
"toHaveBeenCalledWith",
"(",
"expect",
".",
"objectContaining",
"(",
"{",
"pos",
":",
"7",
"}",
")",
",",
"expect",
".",
"any",
"(",
"Transaction",
")",
",",
"{",
"change",
":",
"undefined",
",",
"exit",
":",
"undefined",
"}",
")",
";",
"}",
")",
";",
"it",
"(",
"'is not called when selecting `all`'",
",",
"(",
")",
"=>",
"{",
"const",
"mocks",
"=",
"{",
"checkNextValidSelection",
":",
"jest",
".",
"fn",
"(",
")",
",",
"onChange",
":",
"jest",
".",
"fn",
"(",
")",
",",
"}",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"invalidMarks",
":",
"[",
"'strong'",
"]",
",",
"...",
"mocks",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@<cursor>'",
")",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'abc'",
")",
";",
"expect",
"(",
"mocks",
".",
"checkNextValidSelection",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"editor",
".",
"insertText",
"(",
"' abcd'",
")",
".",
"selectText",
"(",
"'all'",
")",
";",
"expect",
"(",
"mocks",
".",
"checkNextValidSelection",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"it",
"(",
"'is not called when selecting `node`'",
",",
"(",
")",
"=>",
"{",
"const",
"mocks",
"=",
"{",
"checkNextValidSelection",
":",
"jest",
".",
"fn",
"(",
")",
",",
"onChange",
":",
"jest",
".",
"fn",
"(",
")",
",",
"}",
";",
"const",
"plugin",
"=",
"suggest",
"(",
"{",
"char",
":",
"'@'",
",",
"name",
":",
"'at'",
",",
"invalidMarks",
":",
"[",
"'strong'",
"]",
",",
"...",
"mocks",
"}",
")",
";",
"const",
"editor",
"=",
"createEditor",
"(",
"doc",
"(",
"p",
"(",
"strong",
"(",
"'@<cursor>'",
")",
")",
")",
",",
"{",
"plugins",
":",
"[",
"plugin",
"]",
"}",
")",
".",
"insertText",
"(",
"'abc'",
")",
";",
"expect",
"(",
"mocks",
".",
"checkNextValidSelection",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"editor",
".",
"insertText",
"(",
"' abcd'",
")",
".",
"selectText",
"(",
"'all'",
")",
";",
"expect",
"(",
"mocks",
".",
"checkNextValidSelection",
")",
".",
"not",
".",
"toHaveBeenCalled",
"(",
")",
";",
"}",
")",
";",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
58,
null,
null,
null,
null,
null,
null,
null,
null,
20573,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660164 | [
"import",
"React",
"from",
"\"react\"",
";",
"export",
"default",
"function",
"ErrorFallback",
"(",
"{",
"error",
",",
"resetErrorBoundary",
"}",
")",
"{",
"return",
"(",
"<",
"div",
"role",
"=",
"\"alert\"",
">",
"<",
"p",
">",
"Something",
"went",
"wrong",
":",
"<",
"/p>",
"<",
"pre",
">",
"{",
"error",
".",
"message",
"}",
"<",
"/pre>",
"<",
"button",
"onClick",
"=",
"{",
"resetErrorBoundary",
"}",
">",
"Try",
"again",
"<",
"/button>",
"<",
"/div>);",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660165 | [
"export",
"const",
"isRunningInElectron",
"=",
"(",
")",
"=>",
"{",
"const",
"userAgent",
"=",
"navigator",
".",
"userAgent",
".",
"toLowerCase",
"(",
")",
";",
"return",
"(",
"userAgent",
".",
"indexOf",
"(",
"\" electron/\"",
")",
">",
"-",
"1",
"&&",
"userAgent",
".",
"indexOf",
"(",
"\"cypress\"",
")",
"===",
"-",
"1",
")",
";",
"}",
";",
"export",
"const",
"openInExplorer",
"=",
"(",
"projectPath",
")",
"=>",
"{",
"const",
"{",
"shell",
"}",
"=",
"require",
"(",
"\"electron\"",
")",
";",
"shell",
".",
"openPath",
"(",
"projectPath",
")",
";",
"}",
";"
] | [
null,
null,
8,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660166 | [
"import",
"{",
"captureException",
"}",
"from",
"\"@sentry/react\"",
";",
"import",
"*",
"as",
"Sentry",
"from",
"\"@sentry/react\"",
";",
"import",
"{",
"Integrations",
"}",
"from",
"\"@sentry/tracing\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../../utils/electron\"",
";",
"import",
"{",
"getItem",
",",
"setItem",
"}",
"from",
"\"../../../utils/storage\"",
";",
"interface",
"IConfigContextValue",
"{",
"config",
":",
"IConfig",
";",
"setConfig",
":",
"(",
"config",
":",
"IConfig",
")",
"=>",
"void",
";",
"changeConfigOption",
":",
"<",
"K",
"extends",
"keyof",
"IConfig",
",",
"V",
"extends",
"IConfig",
"[",
"K",
"]",
">",
"(",
"key",
":",
"K",
",",
"value",
":",
"V",
")",
"=>",
"void",
";",
"}",
"interface",
"IConfigProviderProps",
"{",
"value",
"?",
":",
"IConfigContextValue",
";",
"children",
":",
"React",
".",
"ReactNode",
";",
"}",
"let",
"port",
"=",
"getItem",
"(",
"\"port\"",
")",
"||",
"window",
".",
"location",
".",
"port",
"||",
"5010",
";",
"console",
".",
"log",
"(",
"\"port:\"",
",",
"port",
")",
";",
"if",
"(",
"process",
".",
"env",
".",
"NODE_ENV",
"!==",
"\"production\"",
")",
"{",
"port",
"=",
"5010",
";",
"}",
"setItem",
"(",
"\"port\"",
",",
"port",
")",
";",
"const",
"browserOnlyConfig",
"=",
"{",
"port",
",",
"enableTerminalTheme",
":",
"Boolean",
"(",
"getItem",
"(",
"\"enableTerminalTheme\"",
")",
")",
"||",
"true",
",",
"showStatusBar",
":",
"Boolean",
"(",
"getItem",
"(",
"\"showStatusBar\"",
")",
")",
"||",
"true",
",",
"taskViewStyle",
":",
"(",
"getItem",
"(",
"\"taskViewStyle\"",
")",
"as",
"TaskViewStyle",
")",
"||",
"\"tabs\"",
",",
"shell",
":",
"\"\"",
",",
"sendErrorReports",
":",
"false",
",",
"}",
";",
"export",
"const",
"ConfigContext",
"=",
"React",
".",
"createContext",
"<",
"IConfigContextValue",
"|",
"undefined",
">",
"(",
"undefined",
")",
";",
"function",
"ConfigProvider",
"(",
"props",
")",
"{",
"const",
"[",
"config",
",",
"setConfig",
"]",
"=",
"React",
".",
"useState",
"(",
"(",
")",
"=>",
"{",
"try",
"{",
"if",
"(",
"isRunningInElectron",
"(",
")",
")",
"{",
"const",
"serverConfig",
"=",
"window",
".",
"desktop",
".",
"getAppConfig",
"(",
")",
";",
"console",
".",
"log",
"(",
"\"serverConfig:\"",
",",
"serverConfig",
")",
";",
"if",
"(",
"serverConfig",
".",
"sendErrorReports",
")",
"{",
"Sentry",
".",
"init",
"(",
"{",
"dsn",
":",
"\"https://[email protected]/5418370\"",
",",
"integrations",
":",
"[",
"new",
"Integrations",
".",
"BrowserTracing",
"(",
")",
"]",
",",
"tracesSampleRate",
":",
"1.0",
",",
"beforeSend",
"(",
"event",
")",
"{",
"if",
"(",
"event",
".",
"user",
")",
"{",
"delete",
"event",
".",
"user",
".",
"email",
";",
"delete",
"event",
".",
"user",
".",
"ip_address",
";",
"}",
"return",
"event",
";",
"}",
",",
"}",
")",
";",
"}",
"if",
"(",
"serverConfig",
")",
"{",
"return",
"serverConfig",
";",
"}",
"return",
"browserOnlyConfig",
";",
"}",
"else",
"{",
"return",
"browserOnlyConfig",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"`Error getting config.`",
")",
";",
"captureException",
"(",
"error",
")",
";",
"return",
"browserOnlyConfig",
";",
"}",
"}",
")",
";",
"const",
"changeConfigOption",
"=",
"React",
".",
"useCallback",
"(",
"<",
"K",
"extends",
"keyof",
"IConfig",
",",
"V",
"extends",
"IConfig",
"[",
"K",
"]",
">",
"(",
"key",
",",
"value",
")",
"=>",
"{",
"const",
"newConfig",
"=",
"{",
"...",
"config",
",",
"[",
"key",
"]",
":",
"value",
",",
"}",
";",
"setConfig",
"(",
"newConfig",
")",
";",
"}",
",",
"[",
"config",
",",
"setConfig",
"]",
")",
";",
"const",
"value",
"=",
"React",
".",
"useMemo",
"(",
"(",
")",
"=>",
"{",
"return",
"{",
"config",
",",
"setConfig",
",",
"changeConfigOption",
"}",
";",
"}",
",",
"[",
"config",
",",
"setConfig",
",",
"changeConfigOption",
"]",
")",
";",
"return",
"<",
"ConfigContext",
".",
"Provider",
"value",
"=",
"{",
"value",
"}",
"{",
"...",
"props",
"}",
"/>;",
"}",
"function",
"useConfig",
"(",
")",
"{",
"const",
"context",
"=",
"React",
".",
"useContext",
"(",
"ConfigContext",
")",
";",
"if",
"(",
"!",
"context",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"useConfig must be used within a ConfigProvider\"",
")",
";",
"}",
"return",
"context",
";",
"}",
"export",
"{",
"ConfigProvider",
",",
"useConfig",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
31,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
37,
null,
37,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
68,
null,
215,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660167 | [
"import",
"localforage",
"from",
"\"localforage\"",
";",
"import",
"throttle",
"from",
"\"lodash/throttle\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"useMountedState",
"}",
"from",
"\"../hooks\"",
";",
"localforage",
".",
"config",
"(",
"{",
"name",
":",
"\"ten-hands\"",
",",
"}",
")",
";",
"export",
"enum",
"ACTION_TYPES",
"{",
"UPDATE_JOB",
",",
"CLEAR_OUTPUT",
",",
"RESTORE_STATE_FROM_STORAGE",
",",
"UPDATE_JOB_PROCESS",
"}",
"export",
"const",
"roomSocketState",
"=",
"{",
"}",
";",
"const",
"initializeRoomSocketState",
"=",
"(",
"state",
")",
"=>",
"{",
"Object",
".",
"keys",
"(",
"state",
")",
".",
"forEach",
"(",
"(",
"taskID",
")",
"=>",
"{",
"roomSocketState",
"[",
"taskID",
"]",
"=",
"false",
";",
"}",
")",
";",
"}",
";",
"const",
"updateData",
"=",
"throttle",
"(",
"async",
"(",
"data",
")",
"=>",
"{",
"try",
"{",
"if",
"(",
"Object",
".",
"keys",
"(",
"data",
")",
".",
"length",
">",
"0",
")",
"{",
"await",
"localforage",
".",
"setItem",
"(",
"\"state\"",
",",
"data",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"}",
"}",
",",
"200",
")",
";",
"export",
"const",
"initialState",
"=",
"{",
"}",
";",
"export",
"const",
"jobsReducer",
"=",
"(",
"state",
"=",
"initialState",
",",
"action",
")",
":",
"Record",
"<",
"any",
",",
"any",
">",
"=>",
"{",
"switch",
"(",
"action",
".",
"type",
")",
"{",
"case",
"ACTION_TYPES",
".",
"UPDATE_JOB",
":",
"{",
"const",
"{",
"taskID",
",",
"stdout",
",",
"isRunning",
"}",
"=",
"action",
";",
"const",
"newStdout",
"=",
"state",
"[",
"taskID",
"]",
"?",
"stdout",
":",
"\"\"",
";",
"return",
"{",
"...",
"state",
",",
"[",
"taskID",
"]",
":",
"{",
"...",
"state",
"[",
"taskID",
"]",
",",
"stdout",
":",
"newStdout",
",",
"isRunning",
",",
"}",
",",
"}",
";",
"}",
"case",
"ACTION_TYPES",
".",
"UPDATE_JOB_PROCESS",
":",
"{",
"const",
"{",
"taskID",
",",
"process",
"}",
"=",
"action",
";",
"const",
"pid",
"=",
"process",
"&&",
"process",
".",
"pid",
"?",
"process",
".",
"pid",
":",
"-",
"1",
";",
"const",
"newState",
"=",
"{",
"...",
"state",
",",
"[",
"taskID",
"]",
":",
"{",
"...",
"state",
"[",
"taskID",
"]",
",",
"isRunning",
":",
"pid",
"===",
"-",
"1",
"?",
"false",
":",
"true",
",",
"process",
",",
"}",
",",
"}",
";",
"updateData",
"(",
"newState",
")",
";",
"return",
"newState",
";",
"}",
"case",
"ACTION_TYPES",
".",
"CLEAR_OUTPUT",
":",
"{",
"const",
"taskID",
"=",
"action",
".",
"taskID",
";",
"return",
"{",
"...",
"state",
",",
"[",
"taskID",
"]",
":",
"{",
"...",
"state",
"[",
"taskID",
"]",
",",
"stdout",
":",
"\"\"",
",",
"}",
",",
"}",
";",
"}",
"case",
"ACTION_TYPES",
".",
"RESTORE_STATE_FROM_STORAGE",
":",
"{",
"return",
"action",
".",
"state",
"??",
"state",
";",
"}",
"default",
":",
"return",
"state",
";",
"}",
"}",
";",
"interface",
"IJobsContextValue",
"{",
"state",
":",
"Record",
"<",
"any",
",",
"any",
">",
";",
"dispatch",
":",
"React",
".",
"Dispatch",
"<",
"IJobAction",
">",
";",
"runningTasks",
":",
"Record",
"<",
"string",
",",
"boolean",
">",
";",
"isTaskRunning",
":",
"(",
"taskId",
":",
"string",
")",
"=>",
"boolean",
";",
"}",
"interface",
"IJobsProviderProps",
"{",
"value",
"?",
":",
"IJobsContextValue",
";",
"children",
":",
"React",
".",
"ReactNode",
";",
"}",
"export",
"const",
"JobsContext",
"=",
"React",
".",
"createContext",
"<",
"IJobsContextValue",
"|",
"undefined",
">",
"(",
"undefined",
")",
";",
"function",
"JobsProvider",
"(",
"props",
")",
"{",
"const",
"isMounted",
"=",
"useMountedState",
"(",
")",
";",
"const",
"[",
"state",
",",
"dispatch",
"]",
"=",
"React",
".",
"useReducer",
"(",
"jobsReducer",
",",
"initialState",
")",
";",
"const",
"[",
"runningTasks",
",",
"setRunningTasks",
"]",
"=",
"React",
".",
"useState",
"<",
"any",
">",
"(",
"{",
"}",
")",
";",
"const",
"isTaskRunning",
"=",
"React",
".",
"useCallback",
"(",
"(",
"taskId",
")",
"=>",
"{",
"return",
"runningTasks",
"[",
"taskId",
"]",
"===",
"true",
";",
"}",
",",
"[",
"runningTasks",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"const",
"keys",
"=",
"Object",
".",
"keys",
"(",
"state",
")",
";",
"if",
"(",
"!",
"keys",
"||",
"keys",
".",
"length",
"===",
"0",
")",
"{",
"setRunningTasks",
"(",
"{",
"}",
")",
";",
"return",
";",
"}",
"const",
"newTaskStatus",
"=",
"{",
"}",
";",
"keys",
".",
"forEach",
"(",
"(",
"key",
")",
"=>",
"{",
"newTaskStatus",
"[",
"key",
"]",
"=",
"(",
"state",
"[",
"key",
"]",
"&&",
"state",
"[",
"key",
"]",
".",
"isRunning",
")",
"||",
"false",
";",
"}",
")",
";",
"if",
"(",
"isMounted",
"(",
")",
")",
"{",
"setRunningTasks",
"(",
"newTaskStatus",
")",
";",
"}",
"}",
",",
"[",
"state",
",",
"isMounted",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"const",
"restoreData",
"=",
"async",
"(",
")",
"=>",
"{",
"try",
"{",
"const",
"storedState",
"=",
"await",
"localforage",
".",
"getItem",
"(",
"\"state\"",
")",
";",
"if",
"(",
"storedState",
")",
"{",
"dispatch",
"(",
"{",
"type",
":",
"ACTION_TYPES",
".",
"RESTORE_STATE_FROM_STORAGE",
",",
"taskID",
":",
"\"none\"",
",",
"state",
":",
"storedState",
",",
"}",
")",
";",
"initializeRoomSocketState",
"(",
"storedState",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"}",
"}",
";",
"restoreData",
"(",
")",
";",
"}",
",",
"[",
"]",
")",
";",
"const",
"value",
"=",
"React",
".",
"useMemo",
"(",
"(",
")",
"=>",
"{",
"return",
"{",
"state",
",",
"dispatch",
",",
"runningTasks",
",",
"isTaskRunning",
",",
"}",
";",
"}",
",",
"[",
"state",
",",
"dispatch",
",",
"runningTasks",
",",
"isTaskRunning",
"]",
")",
";",
"return",
"<",
"JobsContext",
".",
"Provider",
"value",
"=",
"{",
"value",
"}",
"{",
"...",
"props",
"}",
"/>;",
"}",
"function",
"useJobs",
"(",
")",
"{",
"const",
"context",
"=",
"React",
".",
"useContext",
"(",
"JobsContext",
")",
";",
"if",
"(",
"!",
"context",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"useJobs must be used within a JobsProvider\"",
")",
";",
"}",
"return",
"context",
";",
"}",
"export",
"{",
"JobsProvider",
",",
"useJobs",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
17,
null,
null,
6,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
31,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
0,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660168 | [
"import",
"Axios",
",",
"{",
"AxiosError",
",",
"AxiosResponse",
"}",
"from",
"\"axios\"",
";",
"export",
"const",
"getProjects",
"=",
"async",
"(",
"config",
")",
":",
"Promise",
"<",
"IProject",
"[",
"]",
">",
"=>",
"{",
"try",
"{",
"const",
"response",
"=",
"await",
"Axios",
".",
"get",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/projects`",
")",
";",
"const",
"projects",
"=",
"response",
".",
"data",
";",
"return",
"projects",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"getProjects error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"saveProjectInDb",
"=",
"async",
"(",
"config",
",",
"projectData",
")",
":",
"Promise",
"<",
"IProject",
">",
"=>",
"{",
"try",
"{",
"const",
"responseData",
"=",
"await",
"Axios",
"(",
"{",
"method",
":",
"\"post\"",
",",
"baseURL",
":",
"`http://localhost:${",
"config",
".",
"port",
"}`",
",",
"url",
":",
"\"projects\"",
",",
"data",
":",
"projectData",
",",
"}",
")",
";",
"const",
"newProject",
"=",
"responseData",
".",
"data",
";",
"return",
"newProject",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"saveProjectInDb error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"renameProjectInDb",
"=",
"async",
"(",
"config",
",",
"projectId",
",",
"newName",
")",
":",
"Promise",
"<",
"IProject",
">",
"=>",
"{",
"try",
"{",
"const",
"responseData",
"=",
"await",
"Axios",
"(",
"{",
"method",
":",
"\"patch\"",
",",
"url",
":",
"`http://localhost:${",
"config",
".",
"port",
"}/projects/${",
"projectId",
"}`",
",",
"data",
":",
"{",
"name",
":",
"newName",
",",
"}",
",",
"}",
")",
";",
"const",
"updatedProject",
"=",
"responseData",
".",
"data",
";",
"return",
"updatedProject",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"renameProjectInDb error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"updateProjectInDb",
"=",
"async",
"(",
"config",
",",
"projectId",
",",
"newProjectData",
")",
":",
"Promise",
"<",
"IProject",
">",
"=>",
"{",
"try",
"{",
"const",
"responseData",
"=",
"await",
"Axios",
"(",
"{",
"method",
":",
"\"put\"",
",",
"url",
":",
"`http://localhost:${",
"config",
".",
"port",
"}/projects/${",
"projectId",
"}`",
",",
"data",
":",
"newProjectData",
",",
"}",
")",
";",
"const",
"updatedProject",
"=",
"responseData",
".",
"data",
";",
"return",
"updatedProject",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"updateProjectInDb error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"deleteProjectInDb",
"=",
"async",
"(",
"config",
",",
"projectId",
")",
"=>",
"{",
"try",
"{",
"await",
"Axios",
".",
"delete",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/projects/${",
"projectId",
"}`",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"deleteProjectInDb error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"deleteTaskInDb",
"=",
"async",
"(",
"config",
",",
"projectId",
",",
"taskId",
")",
"=>",
"{",
"try",
"{",
"await",
"Axios",
".",
"delete",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/projects/${",
"projectId",
"}/commands/${",
"taskId",
"}`",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"deleteTask error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"reorderTasksInDb",
"=",
"async",
"(",
"config",
",",
"projectId",
",",
"commands",
",",
"taskSortOrder",
"=",
"\"name-asc\"",
")",
"=>",
"{",
"try",
"{",
"await",
"Axios",
".",
"post",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/projects/${",
"projectId",
"}/commands/reorder`",
",",
"{",
"commands",
",",
"taskSortOrder",
",",
"}",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"reorderTasks error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"saveTaskInDb",
"=",
"async",
"(",
"config",
",",
"activeProjectId",
",",
"newTask",
")",
":",
"Promise",
"<",
"any",
">",
"=>",
"{",
"try",
"{",
"const",
"responseData",
"=",
"await",
"Axios",
"(",
"{",
"timeout",
":",
"5000",
",",
"method",
":",
"\"post\"",
",",
"baseURL",
":",
"`http://localhost:${",
"config",
".",
"port",
"}`",
",",
"url",
":",
"`projects/${",
"activeProjectId",
"}/commands`",
",",
"data",
":",
"newTask",
",",
"}",
")",
";",
"const",
"updatedProject",
"=",
"responseData",
".",
"data",
";",
"return",
"updatedProject",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"saveProjectInDb error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"updateTaskInDb",
"=",
"async",
"(",
"config",
",",
"activeProjectId",
",",
"taskId",
",",
"newTask",
")",
":",
"Promise",
"<",
"any",
">",
"=>",
"{",
"try",
"{",
"const",
"responseData",
"=",
"await",
"Axios",
"(",
"{",
"timeout",
":",
"5000",
",",
"method",
":",
"\"put\"",
",",
"baseURL",
":",
"`http://localhost:${",
"config",
".",
"port",
"}`",
",",
"url",
":",
"`projects/${",
"activeProjectId",
"}/commands/${",
"taskId",
"}`",
",",
"data",
":",
"newTask",
",",
"}",
")",
";",
"const",
"updatedProject",
"=",
"responseData",
".",
"data",
";",
"return",
"updatedProject",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"saveProjectInDb error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"reorderProjectsInDb",
"=",
"async",
"(",
"config",
",",
"projectIds",
")",
"=>",
"{",
"try",
"{",
"await",
"Axios",
".",
"post",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/projects/reorder`",
",",
"{",
"projectIds",
",",
"}",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"reorderProjects error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"checkIfValidPath",
"=",
"async",
"(",
"config",
",",
"path",
")",
"=>",
"{",
"try",
"{",
"const",
"response",
"=",
"await",
"Axios",
".",
"post",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/utils/is-valid-path`",
",",
"{",
"path",
",",
"}",
")",
";",
"return",
"response",
".",
"data",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"checkIfValidPath error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"getGitRepo",
"=",
"async",
"(",
"config",
",",
"path",
")",
"=>",
"{",
"try",
"{",
"const",
"response",
"=",
"await",
"Axios",
".",
"post",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/utils/git-info`",
",",
"{",
"path",
",",
"}",
")",
";",
"return",
"response",
".",
"data",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"updateRunningTaskCountInDB",
"=",
"async",
"(",
"config",
",",
"count",
")",
"=>",
"{",
"try",
"{",
"const",
"response",
"=",
"await",
"Axios",
".",
"put",
"(",
"`http://localhost:${",
"config",
".",
"port",
"}/utils/running-task-count`",
",",
"{",
"count",
",",
"}",
")",
";",
"return",
"response",
".",
"data",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"updateRunningTaskCountInDB error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
";",
"export",
"const",
"getFetcher",
"=",
"async",
"(",
"url",
")",
"=>",
"Axios",
".",
"get",
"(",
"url",
")",
".",
"then",
"(",
"(",
"res",
")",
"=>",
"res",
".",
"data",
")",
".",
"catch",
"(",
"function",
"(",
"error",
")",
"{",
"if",
"(",
"error",
".",
"response",
")",
"{",
"console",
".",
"error",
"(",
"error",
".",
"response",
".",
"data",
")",
";",
"return",
"error",
".",
"response",
".",
"data",
";",
"}",
"else",
"if",
"(",
"error",
".",
"request",
")",
"{",
"console",
".",
"error",
"(",
"error",
".",
"request",
")",
";",
"}",
"else",
"{",
"console",
".",
"error",
"(",
"\"Error\"",
",",
"error",
".",
"message",
")",
";",
"return",
"error",
".",
"message",
";",
"}",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
5,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
2,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
3,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
92,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1714,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660169 | [
"import",
"\"xterm/css/xterm.css\"",
";",
"import",
"{",
"Classes",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"{",
"ITerminalOptions",
",",
"ITheme",
",",
"Terminal",
"}",
"from",
"\"xterm\"",
";",
"import",
"{",
"FitAddon",
"}",
"from",
"\"xterm-addon-fit\"",
";",
"import",
"{",
"WebLinksAddon",
"}",
"from",
"\"xterm-addon-web-links\"",
";",
"import",
"{",
"WebglAddon",
"}",
"from",
"\"xterm-addon-webgl\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../utils/electron\"",
";",
"function",
"webLinksOnLinkClick",
"(",
"_event",
",",
"uri",
")",
"{",
"if",
"(",
"isRunningInElectron",
"(",
")",
")",
"{",
"window",
".",
"desktop",
".",
"openWeblink",
"(",
"uri",
")",
";",
"}",
"}",
"class",
"JobTerminal",
"{",
"public",
"_id",
":",
"string",
";",
"public",
"isOpened",
"=",
"false",
";",
"private",
"terminal",
":",
"Terminal",
";",
"public",
"fitAddon",
":",
"FitAddon",
";",
"public",
"webLinksAddon",
":",
"WebLinksAddon",
";",
"private",
"options",
":",
"ITerminalOptions",
"=",
"{",
"convertEol",
":",
"true",
",",
"}",
";",
"private",
"darkTheme",
":",
"ITheme",
"=",
"{",
"background",
":",
"\"#202B33\"",
",",
"foreground",
":",
"\"#F5F8FA\"",
",",
"}",
";",
"private",
"lightTheme",
":",
"ITheme",
"=",
"{",
"background",
":",
"\"#F5F8FA\"",
",",
"foreground",
":",
"\"#000000\"",
",",
"selection",
":",
"\"#73869480\"",
",",
"}",
";",
"private",
"_container",
":",
"HTMLDivElement",
"=",
"document",
".",
"createElement",
"(",
"\"div\"",
")",
";",
"constructor",
"(",
"_id",
")",
"{",
"this",
".",
"_id",
"=",
"_id",
";",
"this",
".",
"terminal",
"=",
"new",
"Terminal",
"(",
"this",
".",
"options",
")",
";",
"this",
".",
"fitAddon",
"=",
"new",
"FitAddon",
"(",
")",
";",
"this",
".",
"webLinksAddon",
"=",
"new",
"WebLinksAddon",
"(",
"webLinksOnLinkClick",
")",
";",
"this",
".",
"terminal",
".",
"loadAddon",
"(",
"this",
".",
"fitAddon",
")",
";",
"this",
".",
"terminal",
".",
"loadAddon",
"(",
"this",
".",
"webLinksAddon",
")",
";",
"}",
"public",
"attachTo",
"(",
"container",
",",
"renderer",
"=",
"\"canvas\"",
")",
"{",
"this",
".",
"_container",
"=",
"container",
";",
"this",
".",
"terminal",
".",
"open",
"(",
"container",
")",
";",
"if",
"(",
"renderer",
"===",
"\"webgl\"",
")",
"{",
"this",
".",
"terminal",
".",
"loadAddon",
"(",
"new",
"WebglAddon",
"(",
")",
")",
";",
"}",
"this",
".",
"fitAddon",
".",
"fit",
"(",
")",
";",
"this",
".",
"terminal",
".",
"element",
"?.",
"addEventListener",
"(",
"\"contextmenu\"",
",",
"(",
"e",
")",
"=>",
"{",
"e",
".",
"preventDefault",
"(",
")",
";",
"if",
"(",
"this",
".",
"terminal",
".",
"hasSelection",
"(",
")",
")",
"{",
"const",
"copySuccess",
"=",
"document",
".",
"execCommand",
"(",
"\"copy\"",
")",
";",
"if",
"(",
"copySuccess",
")",
"{",
"this",
".",
"terminal",
".",
"clearSelection",
"(",
")",
";",
"}",
"}",
"}",
")",
";",
"this",
".",
"terminal",
".",
"element",
"?.",
"addEventListener",
"(",
"\"keydown\"",
",",
"(",
"e",
")",
"=>",
"{",
"e",
".",
"preventDefault",
"(",
")",
";",
"if",
"(",
"!",
"e",
".",
"ctrlKey",
"&&",
"!",
"e",
".",
"shiftKey",
")",
"{",
"return",
";",
"}",
"if",
"(",
"this",
".",
"terminal",
".",
"hasSelection",
"(",
")",
"&&",
"e",
".",
"key",
".",
"toLowerCase",
"(",
")",
"===",
"\"c\"",
")",
"{",
"const",
"copySuccess",
"=",
"document",
".",
"execCommand",
"(",
"\"copy\"",
")",
";",
"if",
"(",
"copySuccess",
")",
"{",
"this",
".",
"terminal",
".",
"clearSelection",
"(",
")",
";",
"}",
"}",
"}",
")",
";",
"}",
"public",
"setTheme",
"(",
"theme",
")",
"{",
"if",
"(",
"theme",
"===",
"Classes",
".",
"DARK",
")",
"{",
"this",
".",
"terminal",
".",
"setOption",
"(",
"\"theme\"",
",",
"this",
".",
"darkTheme",
")",
";",
"}",
"else",
"{",
"this",
".",
"terminal",
".",
"setOption",
"(",
"\"theme\"",
",",
"this",
".",
"lightTheme",
")",
";",
"}",
"}",
"public",
"getTheme",
"(",
")",
"{",
"return",
"this",
".",
"terminal",
".",
"getOption",
"(",
"\"theme\"",
")",
";",
"}",
"public",
"removeTheme",
"(",
")",
"{",
"this",
".",
"terminal",
".",
"setOption",
"(",
"\"theme\"",
",",
"{",
"}",
")",
";",
"}",
"public",
"resizeTerminal",
"(",
"width",
")",
"{",
"this",
".",
"terminal",
".",
"resize",
"(",
"Math",
".",
"floor",
"(",
"width",
"/",
"10",
")",
",",
"20",
")",
";",
"}",
"public",
"updateOutput",
"(",
"stdout",
")",
"{",
"this",
".",
"terminal",
".",
"write",
"(",
"stdout",
")",
";",
"}",
"public",
"clear",
"(",
")",
"{",
"this",
".",
"terminal",
".",
"clear",
"(",
")",
";",
"}",
"public",
"destroy",
"(",
")",
"{",
"this",
".",
"terminal",
".",
"dispose",
"(",
")",
";",
"}",
"}",
"export",
"default",
"JobTerminal",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
41,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
39,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
41,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
69,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660170 | [
"import",
"JobTerminal",
"from",
"\"./JobTerminal\"",
";",
"class",
"JobTerminalManager",
"{",
"public",
"static",
"getInstance",
"(",
")",
"{",
"if",
"(",
"!",
"JobTerminalManager",
".",
"_instance",
")",
"{",
"JobTerminalManager",
".",
"_instance",
"=",
"new",
"JobTerminalManager",
"(",
")",
";",
"}",
"return",
"this",
".",
"_instance",
";",
"}",
"private",
"static",
"_instance",
":",
"JobTerminalManager",
";",
"private",
"_terminals",
":",
"{",
"[",
"key",
"]",
":",
"JobTerminal",
";",
"}",
"=",
"{",
"}",
";",
"public",
"createJobTerminal",
"(",
"roomId",
")",
"{",
"let",
"terminal",
"=",
"this",
".",
"getTerminalForRoom",
"(",
"roomId",
")",
";",
"if",
"(",
"!",
"terminal",
")",
"{",
"terminal",
"=",
"new",
"JobTerminal",
"(",
"roomId",
")",
";",
"this",
".",
"_terminals",
"[",
"roomId",
"]",
"=",
"terminal",
";",
"}",
"return",
"terminal",
";",
"}",
"public",
"updateOutputInRoom",
"(",
"roomId",
",",
"output",
")",
"{",
"const",
"terminal",
"=",
"this",
".",
"_terminals",
"[",
"roomId",
"]",
";",
"if",
"(",
"terminal",
")",
"{",
"terminal",
".",
"updateOutput",
"(",
"output",
")",
";",
"}",
"}",
"public",
"clearTerminalInRoom",
"(",
"roomId",
")",
"{",
"const",
"terminal",
"=",
"this",
".",
"_terminals",
"[",
"roomId",
"]",
";",
"if",
"(",
"terminal",
")",
"{",
"terminal",
".",
"clear",
"(",
")",
";",
"}",
"}",
"public",
"getTerminalForRoom",
"(",
"roomId",
")",
"{",
"return",
"this",
".",
"_terminals",
"[",
"roomId",
"]",
"||",
"undefined",
";",
"}",
"}",
"export",
"default",
"JobTerminalManager",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
2,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
2,
null,
2,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
2,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660171 | [
"import",
"*",
"as",
"Sentry",
"from",
"\"@sentry/react\"",
";",
"import",
"{",
"Integrations",
"}",
"from",
"\"@sentry/tracing\"",
";",
"import",
"{",
"atom",
"}",
"from",
"\"recoil\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../../utils/electron\"",
";",
"import",
"{",
"getItem",
",",
"setItem",
"}",
"from",
"\"../../../utils/storage\"",
";",
"export",
"const",
"activeProjectAtom",
"=",
"atom",
"<",
"IProject",
">",
"(",
"{",
"key",
":",
"\"activeProject\"",
",",
"default",
":",
"{",
"_id",
":",
"\"\"",
",",
"name",
":",
"\"\"",
",",
"type",
":",
"\"\"",
",",
"path",
":",
"\"\"",
",",
"shell",
":",
"\"\"",
",",
"configFile",
":",
"\"\"",
",",
"taskSortOrder",
":",
"\"name-asc\"",
",",
"commands",
":",
"[",
"]",
",",
"}",
",",
"}",
")",
";",
"export",
"const",
"projectsAtom",
"=",
"atom",
"<",
"IProject",
"[",
"]",
">",
"(",
"{",
"key",
":",
"\"projects\"",
",",
"default",
":",
"[",
"]",
",",
"}",
")",
";",
"function",
"getConfig",
"(",
")",
"{",
"if",
"(",
"isRunningInElectron",
"(",
")",
")",
"{",
"const",
"serverConfig",
"=",
"window",
".",
"desktop",
".",
"getAppConfig",
"(",
")",
";",
"console",
".",
"log",
"(",
"\"serverConfig:\"",
",",
"serverConfig",
")",
";",
"if",
"(",
"serverConfig",
".",
"sendErrorReports",
")",
"{",
"Sentry",
".",
"init",
"(",
"{",
"dsn",
":",
"\"https://[email protected]/5418370\"",
",",
"integrations",
":",
"[",
"new",
"Integrations",
".",
"BrowserTracing",
"(",
")",
"]",
",",
"tracesSampleRate",
":",
"1.0",
",",
"beforeSend",
"(",
"event",
")",
"{",
"if",
"(",
"event",
".",
"user",
")",
"{",
"delete",
"event",
".",
"user",
".",
"email",
";",
"delete",
"event",
".",
"user",
".",
"ip_address",
";",
"}",
"return",
"event",
";",
"}",
",",
"}",
")",
";",
"}",
"return",
"serverConfig",
";",
"}",
"else",
"{",
"let",
"port",
"=",
"getItem",
"(",
"\"port\"",
")",
"||",
"window",
".",
"location",
".",
"port",
"||",
"5010",
";",
"console",
".",
"log",
"(",
"\"port:\"",
",",
"port",
")",
";",
"if",
"(",
"process",
".",
"env",
".",
"NODE_ENV",
"!==",
"\"production\"",
")",
"{",
"port",
"=",
"5010",
";",
"}",
"setItem",
"(",
"\"port\"",
",",
"port",
")",
";",
"const",
"browserOnlyConfig",
"=",
"{",
"port",
",",
"enableTerminalTheme",
":",
"Boolean",
"(",
"getItem",
"(",
"\"enableTerminalTheme\"",
")",
")",
"||",
"true",
",",
"showStatusBar",
":",
"Boolean",
"(",
"getItem",
"(",
"\"showStatusBar\"",
")",
")",
"||",
"true",
",",
"taskViewStyle",
":",
"(",
"getItem",
"(",
"\"taskViewStyle\"",
")",
"as",
"TaskViewStyle",
")",
"||",
"\"tabs\"",
",",
"shell",
":",
"\"\"",
",",
"sendErrorReports",
":",
"false",
",",
"}",
";",
"return",
"browserOnlyConfig",
";",
"}",
"}",
"export",
"const",
"configAtom",
"=",
"atom",
"<",
"IConfig",
">",
"(",
"{",
"key",
":",
"\"config\"",
",",
"default",
":",
"getConfig",
"(",
")",
",",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1664,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1664,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
37,
null,
37,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1664,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660172 | [
"import",
"chalk",
"from",
"\"chalk\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"{",
"io",
"}",
"from",
"\"socket.io-client\"",
";",
"import",
"JobTerminalManager",
"from",
"\"../JobTerminalManager\"",
";",
"import",
"{",
"configAtom",
"}",
"from",
"\"../state/atoms\"",
";",
"import",
"{",
"ACTION_TYPES",
",",
"useJobs",
"}",
"from",
"\"./JobStore\"",
";",
"const",
"options",
"=",
"{",
"enabled",
":",
"true",
",",
"level",
":",
"3",
"}",
";",
"const",
"forcedChalk",
"=",
"new",
"chalk",
".",
"Instance",
"(",
"options",
")",
";",
"interface",
"ISocketContextValue",
"{",
"isSocketInitialized",
":",
"boolean",
";",
"initializeSocket",
":",
"(",
")",
"=>",
"void",
";",
"subscribeToTaskSocket",
":",
"(",
"taskID",
":",
"string",
",",
"command",
":",
"IProjectCommand",
",",
"projectPath",
":",
"string",
",",
"shell",
"?",
":",
"string",
")",
"=>",
"void",
";",
"_socket",
":",
"any",
";",
"unsubscribeFromTaskSocket",
":",
"(",
"taskID",
":",
"string",
",",
"pid",
":",
"number",
")",
"=>",
"void",
";",
"restartTask",
":",
"(",
"taskID",
":",
"string",
",",
"pid",
":",
"number",
",",
"command",
":",
"IProjectCommand",
",",
"projectPath",
":",
"string",
",",
"shell",
"?",
":",
"string",
")",
"=>",
"void",
";",
"}",
"interface",
"ISocketProviderProps",
"{",
"value",
"?",
":",
"ISocketContextValue",
";",
"children",
":",
"React",
".",
"ReactNode",
";",
"}",
"export",
"const",
"SocketsContext",
"=",
"React",
".",
"createContext",
"<",
"ISocketContextValue",
"|",
"undefined",
">",
"(",
"undefined",
")",
";",
"function",
"SocketsProvider",
"(",
"props",
")",
"{",
"const",
"[",
"isSocketInitialized",
",",
"setSocketInitialized",
"]",
"=",
"React",
".",
"useState",
"(",
"false",
")",
";",
"const",
"{",
"dispatch",
"}",
"=",
"useJobs",
"(",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"terminalManager",
"=",
"JobTerminalManager",
".",
"getInstance",
"(",
")",
";",
"const",
"_socket",
"=",
"React",
".",
"useRef",
"<",
"any",
">",
"(",
")",
";",
"const",
"updateJob",
"=",
"(",
"taskID",
",",
"stdout",
")",
"=>",
"{",
"terminalManager",
".",
"updateOutputInRoom",
"(",
"taskID",
",",
"stdout",
")",
";",
"}",
";",
"const",
"updateJobProcess",
"=",
"(",
"taskID",
",",
"jobProcess",
")",
"=>",
"{",
"dispatch",
"(",
"{",
"taskID",
",",
"type",
":",
"ACTION_TYPES",
".",
"UPDATE_JOB_PROCESS",
",",
"process",
":",
"jobProcess",
",",
"}",
")",
";",
"}",
";",
"const",
"initializeSocket",
"=",
"React",
".",
"useCallback",
"(",
"(",
")",
"=>",
"{",
"const",
"socketURL",
"=",
"`http://localhost:${",
"config",
".",
"port",
"}/desktop`",
";",
"_socket",
".",
"current",
"=",
"io",
"(",
"socketURL",
",",
"{",
"withCredentials",
":",
"true",
",",
"reconnectionAttempts",
":",
"2",
",",
"}",
")",
";",
"if",
"(",
"isSocketInitialized",
")",
"{",
"return",
";",
"}",
"_socket",
".",
"current",
".",
"on",
"(",
"`connect`",
",",
"(",
")",
"=>",
"{",
"}",
")",
";",
"_socket",
".",
"current",
".",
"on",
"(",
"`job_started`",
",",
"(",
"message",
")",
"=>",
"{",
"const",
"taskID",
"=",
"message",
".",
"taskID",
";",
"console",
".",
"info",
"(",
"`Process started for cmd: ${",
"taskID",
"}`",
")",
";",
"updateJobProcess",
"(",
"taskID",
",",
"message",
".",
"data",
")",
";",
"if",
"(",
"message",
".",
"data",
".",
"pid",
")",
"{",
"updateJob",
"(",
"taskID",
",",
"`--Process started with PID: ${",
"message",
".",
"data",
".",
"pid",
"}--\\n\\n`",
")",
";",
"}",
"}",
")",
";",
"_socket",
".",
"current",
".",
"on",
"(",
"`job_output`",
",",
"(",
"message",
")",
"=>",
"{",
"const",
"taskID",
"=",
"message",
".",
"taskID",
";",
"updateJob",
"(",
"taskID",
",",
"message",
".",
"data",
")",
";",
"}",
")",
";",
"_socket",
".",
"current",
".",
"on",
"(",
"`job_error`",
",",
"(",
"message",
")",
"=>",
"{",
"const",
"taskID",
"=",
"message",
".",
"taskID",
";",
"console",
".",
"info",
"(",
"`Process error in taskID: ${",
"taskID",
"}`",
")",
";",
"updateJob",
"(",
"taskID",
",",
"message",
".",
"data",
")",
";",
"}",
")",
";",
"_socket",
".",
"current",
".",
"on",
"(",
"`job_close`",
",",
"(",
"message",
")",
"=>",
"{",
"const",
"taskID",
"=",
"message",
".",
"taskID",
";",
"console",
".",
"info",
"(",
"`Process close in taskID: ${",
"taskID",
"}`",
")",
";",
"updateJob",
"(",
"taskID",
",",
"forcedChalk",
".",
"bold",
"(",
"message",
".",
"data",
"+",
"\"\\n\"",
")",
")",
";",
"updateJobProcess",
"(",
"taskID",
",",
"{",
"pid",
":",
"-",
"1",
",",
"}",
")",
";",
"}",
")",
";",
"_socket",
".",
"current",
".",
"on",
"(",
"`job_exit`",
",",
"(",
"message",
")",
"=>",
"{",
"const",
"taskID",
"=",
"message",
".",
"taskID",
";",
"console",
".",
"info",
"(",
"`Process exit in taskID: ${",
"taskID",
"}`",
")",
";",
"updateJob",
"(",
"taskID",
",",
"forcedChalk",
".",
"bold",
"(",
"message",
".",
"data",
"+",
"\"\\n\"",
")",
")",
";",
"updateJobProcess",
"(",
"taskID",
",",
"{",
"pid",
":",
"-",
"1",
",",
"}",
")",
";",
"}",
")",
";",
"_socket",
".",
"current",
".",
"on",
"(",
"`job_killed`",
",",
"(",
"message",
")",
"=>",
"{",
"const",
"taskID",
"=",
"message",
".",
"taskID",
";",
"console",
".",
"info",
"(",
"`Process killed in taskID: ${",
"taskID",
"}; killed process id: ${",
"message",
".",
"data",
"}`",
")",
";",
"updateJob",
"(",
"taskID",
",",
"forcedChalk",
".",
"bold",
".",
"redBright",
"(",
"`process with id ${",
"message",
".",
"data",
"} killed by user.\\n`",
")",
")",
";",
"updateJobProcess",
"(",
"taskID",
",",
"{",
"pid",
":",
"-",
"1",
",",
"}",
")",
";",
"}",
")",
";",
"setSocketInitialized",
"(",
"true",
")",
";",
"}",
",",
"[",
"]",
")",
";",
"const",
"subscribeToTaskSocket",
"=",
"React",
".",
"useCallback",
"(",
"(",
"taskID",
",",
"command",
",",
"projectPath",
",",
"shell",
")",
"=>",
"{",
"try",
"{",
"if",
"(",
"_socket",
"&&",
"_socket",
".",
"current",
")",
"{",
"_socket",
".",
"current",
".",
"emit",
"(",
"\"subscribe\"",
",",
"{",
"taskID",
",",
"command",
",",
"projectPath",
",",
"shell",
",",
"}",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"subscribeToTaskSocket error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
",",
"[",
"]",
")",
";",
"const",
"unsubscribeFromTaskSocket",
"=",
"React",
".",
"useCallback",
"(",
"(",
"taskID",
",",
"pid",
")",
"=>",
"{",
"try",
"{",
"if",
"(",
"_socket",
"&&",
"_socket",
".",
"current",
")",
"{",
"_socket",
".",
"current",
".",
"emit",
"(",
"\"unsubscribe\"",
",",
"{",
"taskID",
",",
"pid",
",",
"}",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"unsubscribeFromTaskSocket error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
",",
"[",
"]",
")",
";",
"const",
"restartTask",
"=",
"React",
".",
"useCallback",
"(",
"(",
"taskID",
",",
"pid",
",",
"command",
",",
"projectPath",
",",
"shell",
")",
"=>",
"{",
"try",
"{",
"if",
"(",
"_socket",
"&&",
"_socket",
".",
"current",
")",
"{",
"_socket",
".",
"current",
".",
"emit",
"(",
"\"restart\"",
",",
"{",
"taskID",
",",
"pid",
",",
"command",
",",
"projectPath",
",",
"shell",
",",
"}",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"\"subscribeToTaskSocket error:\"",
",",
"error",
")",
";",
"throw",
"error",
";",
"}",
"}",
",",
"[",
"]",
")",
";",
"const",
"value",
"=",
"React",
".",
"useMemo",
"(",
"(",
")",
"=>",
"(",
"{",
"isSocketInitialized",
",",
"initializeSocket",
",",
"subscribeToTaskSocket",
",",
"_socket",
",",
"unsubscribeFromTaskSocket",
",",
"restartTask",
",",
"}",
")",
",",
"[",
"isSocketInitialized",
",",
"initializeSocket",
",",
"subscribeToTaskSocket",
",",
"_socket",
",",
"unsubscribeFromTaskSocket",
",",
"restartTask",
",",
"]",
")",
";",
"return",
"<",
"SocketsContext",
".",
"Provider",
"{",
"...",
"props",
"}",
"value",
"=",
"{",
"value",
"}",
"/",
">",
";",
"}",
"function",
"useSockets",
"(",
")",
"{",
"const",
"context",
"=",
"React",
".",
"useContext",
"(",
"SocketsContext",
")",
";",
"if",
"(",
"!",
"context",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"useSockets must be used within a ConfigProvider\"",
")",
";",
"}",
"return",
"context",
";",
"}",
"export",
"{",
"SocketsProvider",
",",
"useSockets",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1437,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
31,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660173 | [
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilState",
",",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../../utils/electron\"",
";",
"import",
"{",
"deleteProjectInDb",
",",
"deleteTaskInDb",
",",
"getProjects",
",",
"renameProjectInDb",
",",
"reorderTasksInDb",
",",
"saveProjectInDb",
",",
"saveTaskInDb",
",",
"updateProjectInDb",
",",
"updateRunningTaskCountInDB",
",",
"updateTaskInDb",
",",
"}",
"from",
"\"../API\"",
";",
"import",
"{",
"useMountedState",
"}",
"from",
"\"../hooks\"",
";",
"import",
"JobTerminalManager",
"from",
"\"../JobTerminalManager\"",
";",
"import",
"{",
"activeProjectAtom",
",",
"configAtom",
",",
"projectsAtom",
"}",
"from",
"\"../state/atoms\"",
";",
"import",
"{",
"ACTION_TYPES",
",",
"useJobs",
"}",
"from",
"\"./JobStore\"",
";",
"import",
"{",
"useSockets",
"}",
"from",
"\"./SocketStore\"",
";",
"interface",
"IProjectContextValue",
"{",
"projectsRunningTaskCount",
":",
"{",
"[",
"key",
"]",
":",
"number",
";",
"}",
";",
"totalRunningTaskCount",
":",
"number",
";",
"projects",
":",
"IProject",
"[",
"]",
";",
"activeProject",
":",
"IProject",
";",
"setActiveProject",
":",
"(",
"activeProject",
":",
"IProject",
")",
"=>",
"void",
";",
"setProjects",
":",
"any",
";",
"updateProjects",
":",
"(",
")",
"=>",
"void",
";",
"addTask",
":",
"(",
"projectId",
":",
"string",
",",
"task",
":",
"IProjectCommand",
")",
"=>",
"any",
";",
"updateTask",
":",
"(",
"projectId",
":",
"string",
",",
"taskId",
":",
"string",
",",
"task",
":",
"IProjectCommand",
")",
"=>",
"any",
";",
"deleteTask",
":",
"(",
"projectId",
":",
"string",
",",
"taskId",
":",
"string",
")",
"=>",
"any",
";",
"addProject",
":",
"(",
"data",
":",
"any",
")",
"=>",
"any",
";",
"deleteProject",
":",
"(",
"projectId",
":",
"string",
")",
"=>",
"any",
";",
"reorderTasks",
":",
"(",
"projectId",
":",
"string",
",",
"newTasks",
":",
"IProjectCommand",
"[",
"]",
",",
"taskSortOrder",
"?",
":",
"TASK_SORT_ORDER",
")",
"=>",
"any",
";",
"loadingProjects",
":",
"boolean",
";",
"renameProject",
":",
"(",
"projectId",
":",
"string",
",",
"newName",
":",
"string",
")",
"=>",
"any",
";",
"updateProject",
":",
"(",
"projectId",
":",
"string",
",",
"newProjectData",
":",
"IProject",
")",
"=>",
"any",
";",
"runAllStoppedTasks",
":",
"(",
")",
"=>",
"void",
";",
"stopAllRunningTasks",
":",
"(",
")",
"=>",
"void",
";",
"}",
"interface",
"IProjectsProviderProps",
"{",
"value",
"?",
":",
"IProjectContextValue",
";",
"children",
":",
"React",
".",
"ReactNode",
";",
"}",
"function",
"getJobData",
"(",
"state",
",",
"taskID",
")",
"{",
"return",
"state",
"[",
"taskID",
"]",
"||",
"\"\"",
";",
"}",
"const",
"getRunningTasksCountForProjects",
"=",
"(",
"projects",
",",
"runningTasks",
")",
":",
"{",
"runningTasksPerProject",
":",
"Record",
"<",
"string",
",",
"number",
">",
";",
"totalRunningTaskCount",
":",
"number",
";",
"}",
"=>",
"{",
"const",
"runningTasksPerProject",
"=",
"{",
"}",
";",
"let",
"totalRunningTaskCount",
"=",
"0",
";",
"projects",
".",
"forEach",
"(",
"(",
"project",
")",
"=>",
"{",
"const",
"{",
"commands",
",",
"_id",
":",
"projectID",
"}",
"=",
"project",
";",
"let",
"runningCount",
"=",
"0",
";",
"commands",
".",
"forEach",
"(",
"(",
"command",
")",
"=>",
"{",
"const",
"{",
"_id",
":",
"commandID",
"}",
"=",
"command",
";",
"if",
"(",
"runningTasks",
"[",
"commandID",
"]",
")",
"{",
"runningCount",
"++",
";",
"totalRunningTaskCount",
"++",
";",
"}",
"}",
")",
";",
"runningTasksPerProject",
"[",
"projectID",
"]",
"=",
"runningCount",
";",
"}",
")",
";",
"return",
"{",
"runningTasksPerProject",
",",
"totalRunningTaskCount",
"}",
";",
"}",
";",
"export",
"const",
"ProjectContext",
"=",
"React",
".",
"createContext",
"<",
"IProjectContextValue",
"|",
"undefined",
">",
"(",
"undefined",
")",
";",
"function",
"ProjectsProvider",
"(",
"props",
")",
"{",
"const",
"initialProject",
"=",
"React",
".",
"useMemo",
"<",
"IProject",
">",
"(",
"(",
")",
"=>",
"(",
"{",
"_id",
":",
"\"\"",
",",
"name",
":",
"\"\"",
",",
"type",
":",
"\"\"",
",",
"path",
":",
"\"\"",
",",
"shell",
":",
"\"\"",
",",
"commands",
":",
"[",
"]",
",",
"}",
")",
",",
"[",
"]",
")",
";",
"const",
"isMounted",
"=",
"useMountedState",
"(",
")",
";",
"const",
"{",
"runningTasks",
",",
"state",
":",
"jobState",
",",
"dispatch",
",",
"isTaskRunning",
"}",
"=",
"useJobs",
"(",
")",
";",
"const",
"terminalManager",
"=",
"JobTerminalManager",
".",
"getInstance",
"(",
")",
";",
"const",
"{",
"subscribeToTaskSocket",
",",
"unsubscribeFromTaskSocket",
"}",
"=",
"useSockets",
"(",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"[",
"activeProject",
",",
"setActiveProject",
"]",
"=",
"useRecoilState",
"(",
"activeProjectAtom",
")",
";",
"const",
"[",
"projects",
",",
"setProjects",
"]",
"=",
"useRecoilState",
"(",
"projectsAtom",
")",
";",
"const",
"[",
"loadingProjects",
",",
"setLoadingProjects",
"]",
"=",
"React",
".",
"useState",
"(",
"true",
")",
";",
"const",
"[",
"projectsRunningTaskCount",
",",
"setProjectsRunningTaskCount",
"]",
"=",
"React",
".",
"useState",
"<",
"any",
">",
"(",
"{",
"}",
")",
";",
"const",
"clearJobOutput",
"=",
"React",
".",
"useCallback",
"(",
"(",
"taskID",
")",
"=>",
"{",
"dispatch",
"(",
"{",
"type",
":",
"ACTION_TYPES",
".",
"CLEAR_OUTPUT",
",",
"taskID",
",",
"}",
")",
";",
"terminalManager",
".",
"clearTerminalInRoom",
"(",
"taskID",
")",
";",
"}",
",",
"[",
"dispatch",
",",
"terminalManager",
"]",
")",
";",
"const",
"updateJobProcess",
"=",
"React",
".",
"useCallback",
"(",
"(",
"taskID",
",",
"jobProcess",
")",
"=>",
"{",
"dispatch",
"(",
"{",
"taskID",
",",
"type",
":",
"ACTION_TYPES",
".",
"UPDATE_JOB_PROCESS",
",",
"process",
":",
"jobProcess",
",",
"}",
")",
";",
"}",
",",
"[",
"dispatch",
"]",
")",
";",
"const",
"stopJob",
"=",
"React",
".",
"useCallback",
"(",
"(",
"command",
")",
"=>",
"{",
"const",
"taskID",
"=",
"command",
".",
"_id",
";",
"const",
"process",
"=",
"getJobData",
"(",
"jobState",
",",
"taskID",
")",
".",
"process",
";",
"const",
"{",
"pid",
"}",
"=",
"process",
";",
"unsubscribeFromTaskSocket",
"(",
"taskID",
",",
"pid",
")",
";",
"updateJobProcess",
"(",
"taskID",
",",
"{",
"pid",
":",
"-",
"1",
",",
"}",
")",
";",
"}",
",",
"[",
"jobState",
",",
"updateJobProcess",
",",
"unsubscribeFromTaskSocket",
"]",
")",
";",
"const",
"stopTask",
"=",
"React",
".",
"useCallback",
"(",
"(",
"command",
")",
"=>",
"{",
"try",
"{",
"stopJob",
"(",
"command",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"`stopTask error: `",
",",
"error",
")",
";",
"}",
"}",
",",
"[",
"stopJob",
"]",
")",
";",
"const",
"[",
"totalRunningTaskCount",
",",
"setTotalRunningTaskCount",
"]",
"=",
"React",
".",
"useState",
"<",
"number",
">",
"(",
"0",
")",
";",
"const",
"updateProjects",
"=",
"React",
".",
"useCallback",
"(",
"(",
")",
"=>",
"{",
"const",
"reloadProjects",
"=",
"async",
"(",
")",
"=>",
"{",
"try",
"{",
"setLoadingProjects",
"(",
"true",
")",
";",
"const",
"receivedProjects",
"=",
"await",
"getProjects",
"(",
"config",
")",
";",
"if",
"(",
"receivedProjects",
"?.",
"length",
">",
"0",
")",
"{",
"setProjects",
"(",
"receivedProjects",
")",
";",
"if",
"(",
"activeProject",
".",
"_id",
"===",
"\"\"",
")",
"{",
"setActiveProject",
"(",
"receivedProjects",
"[",
"0",
"]",
")",
";",
"}",
"else",
"{",
"const",
"newActiveProject",
"=",
"receivedProjects",
".",
"find",
"(",
"(",
"project",
")",
"=>",
"project",
".",
"_id",
"===",
"activeProject",
".",
"_id",
")",
";",
"if",
"(",
"newActiveProject",
")",
"{",
"setActiveProject",
"(",
"newActiveProject",
")",
";",
"}",
"else",
"{",
"setActiveProject",
"(",
"receivedProjects",
"[",
"0",
"]",
")",
";",
"}",
"}",
"}",
"else",
"{",
"setProjects",
"(",
"[",
"]",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"error",
")",
";",
"}",
"finally",
"{",
"if",
"(",
"isMounted",
"(",
")",
")",
"{",
"setLoadingProjects",
"(",
"false",
")",
";",
"}",
"}",
"}",
";",
"reloadProjects",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"setProjects",
",",
"activeProject",
".",
"_id",
",",
"setActiveProject",
",",
"isMounted",
"]",
")",
";",
"const",
"deleteTask",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
",",
"taskId",
")",
"=>",
"{",
"const",
"deleteTaskFn",
"=",
"async",
"(",
")",
"=>",
"{",
"await",
"deleteTaskInDb",
"(",
"config",
",",
"projectId",
",",
"taskId",
")",
";",
"const",
"currentProjectIndex",
"=",
"projects",
".",
"findIndex",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"===",
"projectId",
")",
";",
"const",
"projectWithThisTask",
"=",
"projects",
"[",
"currentProjectIndex",
"]",
";",
"if",
"(",
"projectWithThisTask",
")",
"{",
"const",
"currentTasks",
"=",
"[",
"...",
"projectWithThisTask",
".",
"commands",
"]",
";",
"const",
"updatedTasks",
"=",
"currentTasks",
".",
"filter",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"!==",
"taskId",
")",
";",
"const",
"updatedProject",
"=",
"{",
"...",
"projectWithThisTask",
",",
"commands",
":",
"updatedTasks",
",",
"}",
";",
"const",
"_projects",
"=",
"[",
"...",
"projects",
"]",
";",
"_projects",
".",
"splice",
"(",
"currentProjectIndex",
",",
"1",
",",
"updatedProject",
")",
";",
"setProjects",
"(",
"_projects",
")",
";",
"setActiveProject",
"(",
"updatedProject",
")",
";",
"}",
"}",
";",
"deleteTaskFn",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"setProjects",
",",
"setActiveProject",
"]",
")",
";",
"const",
"renameProject",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
",",
"newName",
")",
"=>",
"{",
"const",
"renameProjectFn",
"=",
"async",
"(",
")",
"=>",
"{",
"await",
"renameProjectInDb",
"(",
"config",
",",
"projectId",
",",
"newName",
")",
";",
"const",
"currentProjectIndex",
"=",
"projects",
".",
"findIndex",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"===",
"projectId",
")",
";",
"const",
"renamingProject",
"=",
"projects",
"[",
"currentProjectIndex",
"]",
";",
"if",
"(",
"renamingProject",
")",
"{",
"const",
"updatedProject",
"=",
"{",
"...",
"renamingProject",
",",
"name",
":",
"newName",
",",
"}",
";",
"const",
"_projects",
"=",
"[",
"...",
"projects",
"]",
";",
"_projects",
".",
"splice",
"(",
"currentProjectIndex",
",",
"1",
",",
"updatedProject",
")",
";",
"if",
"(",
"isMounted",
"(",
")",
")",
"{",
"setProjects",
"(",
"_projects",
")",
";",
"setActiveProject",
"(",
"updatedProject",
")",
";",
"}",
"}",
"}",
";",
"renameProjectFn",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"isMounted",
",",
"setProjects",
",",
"setActiveProject",
"]",
")",
";",
"const",
"updateProject",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
",",
"newProjectData",
")",
"=>",
"{",
"const",
"updateProjectFn",
"=",
"async",
"(",
")",
"=>",
"{",
"await",
"updateProjectInDb",
"(",
"config",
",",
"projectId",
",",
"newProjectData",
")",
";",
"const",
"currentProjectIndex",
"=",
"projects",
".",
"findIndex",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"===",
"projectId",
")",
";",
"const",
"renamingProject",
"=",
"projects",
"[",
"currentProjectIndex",
"]",
";",
"if",
"(",
"renamingProject",
")",
"{",
"const",
"updatedProject",
"=",
"{",
"...",
"renamingProject",
",",
"...",
"newProjectData",
",",
"}",
";",
"const",
"_projects",
"=",
"[",
"...",
"projects",
"]",
";",
"_projects",
".",
"splice",
"(",
"currentProjectIndex",
",",
"1",
",",
"updatedProject",
")",
";",
"if",
"(",
"isMounted",
"(",
")",
")",
"{",
"setProjects",
"(",
"_projects",
")",
";",
"setActiveProject",
"(",
"updatedProject",
")",
";",
"}",
"}",
"}",
";",
"updateProjectFn",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"isMounted",
",",
"setProjects",
",",
"setActiveProject",
"]",
")",
";",
"const",
"reorderTasks",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
",",
"commands",
",",
"taskSortOrder",
"=",
"\"name-asc\"",
")",
"=>",
"{",
"const",
"reorderTasksFn",
"=",
"async",
"(",
")",
"=>",
"{",
"await",
"reorderTasksInDb",
"(",
"config",
",",
"projectId",
",",
"commands",
",",
"taskSortOrder",
")",
";",
"const",
"currentProjectIndex",
"=",
"projects",
".",
"findIndex",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"===",
"projectId",
")",
";",
"const",
"projectWithThisTask",
"=",
"projects",
"[",
"currentProjectIndex",
"]",
";",
"if",
"(",
"projectWithThisTask",
")",
"{",
"const",
"updatedProject",
"=",
"{",
"...",
"projectWithThisTask",
",",
"commands",
",",
"taskSortOrder",
",",
"}",
";",
"const",
"_projects",
"=",
"[",
"...",
"projects",
"]",
";",
"_projects",
".",
"splice",
"(",
"currentProjectIndex",
",",
"1",
",",
"updatedProject",
")",
";",
"setProjects",
"(",
"_projects",
")",
";",
"setActiveProject",
"(",
"updatedProject",
")",
";",
"}",
"}",
";",
"reorderTasksFn",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"setProjects",
",",
"setActiveProject",
"]",
")",
";",
"const",
"addTask",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
",",
"task",
")",
"=>",
"{",
"const",
"addTaskInFn",
"=",
"async",
"(",
"projectID",
",",
"newTask",
")",
"=>",
"{",
"try",
"{",
"await",
"saveTaskInDb",
"(",
"config",
",",
"projectID",
",",
"newTask",
")",
";",
"const",
"currentProjectIndex",
"=",
"projects",
".",
"findIndex",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"===",
"projectID",
")",
";",
"const",
"projectWithThisTask",
"=",
"projects",
"[",
"currentProjectIndex",
"]",
";",
"if",
"(",
"projectWithThisTask",
")",
"{",
"const",
"updatedTasks",
"=",
"[",
"newTask",
",",
"...",
"projectWithThisTask",
".",
"commands",
"]",
";",
"const",
"updatedProject",
"=",
"{",
"...",
"projectWithThisTask",
",",
"commands",
":",
"updatedTasks",
",",
"}",
";",
"const",
"_projects",
"=",
"[",
"...",
"projects",
"]",
";",
"_projects",
".",
"splice",
"(",
"currentProjectIndex",
",",
"1",
",",
"updatedProject",
")",
";",
"setProjects",
"(",
"_projects",
")",
";",
"setActiveProject",
"(",
"updatedProject",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"}",
"}",
";",
"addTaskInFn",
"(",
"projectId",
",",
"task",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"setProjects",
",",
"setActiveProject",
"]",
")",
";",
"const",
"updateTask",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
",",
"taskId",
",",
"task",
")",
"=>",
"{",
"const",
"updateTaskFn",
"=",
"async",
"(",
"projectID",
",",
"updatingTaskID",
",",
"updatedTask",
")",
"=>",
"{",
"try",
"{",
"await",
"updateTaskInDb",
"(",
"config",
",",
"projectID",
",",
"updatingTaskID",
",",
"updatedTask",
")",
";",
"const",
"currentProjectIndex",
"=",
"projects",
".",
"findIndex",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"===",
"projectID",
")",
";",
"const",
"projectWithThisTask",
"=",
"projects",
"[",
"currentProjectIndex",
"]",
";",
"if",
"(",
"projectWithThisTask",
")",
"{",
"const",
"taskIndex",
"=",
"projectWithThisTask",
".",
"commands",
".",
"findIndex",
"(",
"(",
"iterTask",
")",
"=>",
"iterTask",
".",
"_id",
"===",
"updatingTaskID",
")",
";",
"if",
"(",
"taskIndex",
"<",
"0",
")",
"{",
"return",
";",
"}",
"const",
"updatedTasks",
"=",
"[",
"...",
"projectWithThisTask",
".",
"commands",
"]",
";",
"updatedTasks",
".",
"splice",
"(",
"taskIndex",
",",
"1",
",",
"updatedTask",
")",
";",
"const",
"updatedProject",
"=",
"{",
"...",
"projectWithThisTask",
",",
"commands",
":",
"updatedTasks",
",",
"}",
";",
"const",
"_projects",
"=",
"[",
"...",
"projects",
"]",
";",
"_projects",
".",
"splice",
"(",
"currentProjectIndex",
",",
"1",
",",
"updatedProject",
")",
";",
"setProjects",
"(",
"_projects",
")",
";",
"setActiveProject",
"(",
"updatedProject",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"}",
"}",
";",
"updateTaskFn",
"(",
"projectId",
",",
"taskId",
",",
"task",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"setProjects",
",",
"setActiveProject",
"]",
")",
";",
"const",
"addProject",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectData",
")",
"=>",
"{",
"const",
"addProjectFn",
"=",
"async",
"(",
")",
"=>",
"{",
"const",
"newProject",
"=",
"await",
"saveProjectInDb",
"(",
"config",
",",
"projectData",
")",
";",
"if",
"(",
"!",
"newProject",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"Failed to add project. Something wrong with server.\"",
")",
";",
"}",
"const",
"copyOfProjects",
"=",
"projects",
".",
"slice",
"(",
")",
";",
"const",
"updatedProjects",
"=",
"[",
"...",
"copyOfProjects",
",",
"newProject",
"]",
";",
"setProjects",
"(",
"updatedProjects",
")",
";",
"setActiveProject",
"(",
"newProject",
")",
";",
"}",
";",
"addProjectFn",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"setActiveProject",
",",
"setProjects",
"]",
")",
";",
"const",
"deleteProject",
"=",
"React",
".",
"useCallback",
"(",
"(",
"projectId",
")",
"=>",
"{",
"const",
"deleteProjectFn",
"=",
"async",
"(",
")",
"=>",
"{",
"if",
"(",
"!",
"projectId",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"ProjectID not passed to deleteProject\"",
")",
";",
"}",
"await",
"deleteProjectInDb",
"(",
"config",
",",
"projectId",
")",
";",
"const",
"newProjects",
"=",
"projects",
".",
"filter",
"(",
"(",
"x",
")",
"=>",
"x",
".",
"_id",
"!==",
"projectId",
")",
";",
"setProjects",
"(",
"newProjects",
")",
";",
"if",
"(",
"newProjects",
"&&",
"newProjects",
"?.",
"length",
">",
"0",
")",
"{",
"setActiveProject",
"(",
"newProjects",
"[",
"0",
"]",
")",
";",
"}",
"else",
"{",
"setActiveProject",
"(",
"initialProject",
")",
";",
"}",
"}",
";",
"deleteProjectFn",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"projects",
",",
"setProjects",
",",
"setActiveProject",
",",
"initialProject",
"]",
")",
";",
"const",
"startJob",
"=",
"React",
".",
"useCallback",
"(",
"(",
"command",
")",
"=>",
"{",
"const",
"taskID",
"=",
"command",
".",
"_id",
";",
"clearJobOutput",
"(",
"taskID",
")",
";",
"const",
"shell",
"=",
"command",
".",
"shell",
"||",
"activeProject",
".",
"shell",
"||",
"config",
".",
"shell",
"||",
"\"\"",
";",
"subscribeToTaskSocket",
"(",
"taskID",
",",
"command",
",",
"activeProject",
".",
"path",
",",
"shell",
")",
";",
"updateTask",
"(",
"activeProject",
".",
"_id",
",",
"taskID",
",",
"{",
"...",
"command",
",",
"lastExecutedAt",
":",
"new",
"Date",
"(",
")",
",",
"}",
")",
";",
"}",
",",
"[",
"activeProject",
".",
"_id",
",",
"activeProject",
".",
"path",
",",
"activeProject",
".",
"shell",
",",
"clearJobOutput",
",",
"config",
".",
"shell",
",",
"subscribeToTaskSocket",
",",
"updateTask",
",",
"]",
")",
";",
"const",
"startTask",
"=",
"React",
".",
"useCallback",
"(",
"(",
"command",
")",
"=>",
"{",
"try",
"{",
"startJob",
"(",
"command",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"`startTask error: `",
",",
"error",
")",
";",
"}",
"}",
",",
"[",
"startJob",
"]",
")",
";",
"const",
"runAllStoppedTasks",
"=",
"React",
".",
"useCallback",
"(",
"(",
")",
"=>",
"{",
"const",
"commandsInProject",
"=",
"activeProject",
".",
"commands",
";",
"commandsInProject",
".",
"forEach",
"(",
"(",
"command",
")",
"=>",
"{",
"if",
"(",
"!",
"isTaskRunning",
"(",
"command",
".",
"_id",
")",
")",
"{",
"startTask",
"(",
"command",
")",
";",
"}",
"}",
")",
";",
"}",
",",
"[",
"activeProject",
".",
"commands",
",",
"isTaskRunning",
",",
"startTask",
"]",
")",
";",
"const",
"stopAllRunningTasks",
"=",
"React",
".",
"useCallback",
"(",
"(",
")",
"=>",
"{",
"const",
"commandsInProject",
"=",
"activeProject",
".",
"commands",
";",
"commandsInProject",
".",
"forEach",
"(",
"(",
"command",
")",
"=>",
"{",
"if",
"(",
"isTaskRunning",
"(",
"command",
".",
"_id",
")",
")",
"{",
"stopTask",
"(",
"command",
")",
";",
"}",
"}",
")",
";",
"}",
",",
"[",
"activeProject",
",",
"stopTask",
",",
"isTaskRunning",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"(",
"async",
"(",
")",
"=>",
"{",
"try",
"{",
"await",
"updateRunningTaskCountInDB",
"(",
"config",
",",
"totalRunningTaskCount",
")",
";",
"if",
"(",
"isRunningInElectron",
"(",
")",
")",
"{",
"window",
".",
"desktop",
".",
"updateTaskCount",
"(",
"totalRunningTaskCount",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error updating task count:\"",
",",
"error",
")",
";",
"}",
"}",
")",
"(",
")",
";",
"}",
",",
"[",
"config",
",",
"totalRunningTaskCount",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"!",
"projects",
")",
"{",
"return",
";",
"}",
"const",
"{",
"runningTasksPerProject",
",",
"totalRunningTaskCount",
":",
"nextTotalRunningTaskCount",
",",
"}",
"=",
"getRunningTasksCountForProjects",
"(",
"projects",
",",
"runningTasks",
")",
";",
"setProjectsRunningTaskCount",
"(",
"runningTasksPerProject",
")",
";",
"setTotalRunningTaskCount",
"(",
"nextTotalRunningTaskCount",
")",
";",
"}",
",",
"[",
"runningTasks",
",",
"projects",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"updateProjects",
"(",
")",
";",
"}",
",",
"[",
"]",
")",
";",
"const",
"value",
"=",
"React",
".",
"useMemo",
"(",
"(",
")",
"=>",
"{",
"return",
"{",
"projects",
",",
"projectsRunningTaskCount",
",",
"activeProject",
",",
"setActiveProject",
",",
"setProjects",
",",
"updateProjects",
",",
"loadingProjects",
",",
"addTask",
",",
"updateTask",
",",
"deleteTask",
",",
"addProject",
",",
"deleteProject",
",",
"reorderTasks",
",",
"renameProject",
",",
"updateProject",
",",
"runAllStoppedTasks",
",",
"stopAllRunningTasks",
",",
"totalRunningTaskCount",
",",
"}",
";",
"}",
",",
"[",
"projects",
",",
"projectsRunningTaskCount",
",",
"activeProject",
",",
"setActiveProject",
",",
"setProjects",
",",
"updateProjects",
",",
"loadingProjects",
",",
"addTask",
",",
"updateTask",
",",
"deleteTask",
",",
"addProject",
",",
"deleteProject",
",",
"reorderTasks",
",",
"renameProject",
",",
"updateProject",
",",
"runAllStoppedTasks",
",",
"stopAllRunningTasks",
",",
"totalRunningTaskCount",
",",
"]",
")",
";",
"return",
"<",
"ProjectContext",
".",
"Provider",
"value",
"=",
"{",
"value",
"}",
"{",
"...",
"props",
"}",
"/>;",
"}",
"function",
"useProjects",
"(",
")",
"{",
"const",
"context",
"=",
"React",
".",
"useContext",
"(",
"ProjectContext",
")",
";",
"if",
"(",
"!",
"context",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"useProjects must be used within a ProjectsProvider\"",
")",
";",
"}",
"return",
"context",
";",
"}",
"export",
"{",
"ProjectsProvider",
",",
"useProjects",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
31,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
0,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
2,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
1128,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
5,
null,
0,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
10065,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
2,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660174 | [
"import",
"{",
"Classes",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"getItem",
",",
"setItem",
"}",
"from",
"\"../../../utils/storage\"",
";",
"import",
"{",
"useMountedState",
"}",
"from",
"\"../hooks\"",
";",
"interface",
"IThemeContextValue",
"{",
"theme",
":",
"string",
";",
"setTheme",
":",
"(",
"theme",
":",
"string",
")",
"=>",
"void",
";",
"}",
"interface",
"IThemeProviderProps",
"{",
"value",
"?",
":",
"IThemeContextValue",
";",
"children",
":",
"React",
".",
"ReactNode",
";",
"}",
"export",
"const",
"ThemeContext",
"=",
"React",
".",
"createContext",
"<",
"IThemeContextValue",
"|",
"undefined",
">",
"(",
"undefined",
")",
";",
"function",
"ThemeProvider",
"(",
"props",
")",
"{",
"const",
"isMounted",
"=",
"useMountedState",
"(",
")",
";",
"const",
"[",
"theme",
",",
"setTheme",
"]",
"=",
"React",
".",
"useState",
"(",
"getItem",
"(",
"\"theme\"",
")",
"||",
"Classes",
".",
"DARK",
")",
";",
"const",
"value",
"=",
"React",
".",
"useMemo",
"(",
"(",
")",
"=>",
"{",
"return",
"{",
"theme",
",",
"setTheme",
"}",
";",
"}",
",",
"[",
"theme",
",",
"setTheme",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"isMounted",
"(",
")",
")",
"{",
"setItem",
"(",
"\"theme\"",
",",
"theme",
")",
";",
"}",
"}",
",",
"[",
"theme",
",",
"isMounted",
"]",
")",
";",
"return",
"<",
"ThemeContext",
".",
"Provider",
"value",
"=",
"{",
"value",
"}",
"{",
"...",
"props",
"}",
"/>;",
"}",
"function",
"useTheme",
"(",
")",
"{",
"const",
"context",
"=",
"React",
".",
"useContext",
"(",
"ThemeContext",
")",
";",
"if",
"(",
"!",
"context",
")",
"{",
"throw",
"new",
"Error",
"(",
"\"useTheme must be used within a ThemeProvider\"",
")",
";",
"}",
"return",
"context",
";",
"}",
"export",
"{",
"ThemeProvider",
",",
"useTheme",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
31,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
0,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660175 | [
"import",
"{",
"checkIfValidPath",
"}",
"from",
"\"../components/shared/API\"",
";",
"export",
"const",
"isValidPath",
"=",
"async",
"(",
"config",
",",
"path",
")",
":",
"Promise",
"<",
"boolean",
">",
"=>",
"{",
"try",
"{",
"const",
"response",
"=",
"await",
"checkIfValidPath",
"(",
"config",
",",
"path",
")",
";",
"if",
"(",
"response",
".",
"isValid",
")",
"{",
"return",
"true",
";",
"}",
"return",
"false",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"return",
"false",
";",
"}",
"}",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
866,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660176 | [
"import",
"{",
"Icon",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"{",
"motion",
"}",
"from",
"\"framer-motion\"",
";",
"import",
"React",
",",
"{",
"useEffect",
",",
"useState",
"}",
"from",
"\"react\"",
";",
"const",
"clamp",
"=",
"(",
"n",
",",
"min",
",",
"max",
")",
"=>",
"Math",
".",
"max",
"(",
"Math",
".",
"min",
"(",
"n",
",",
"max",
")",
",",
"min",
")",
";",
"function",
"Resizable",
"(",
"{",
"children",
",",
"onResize",
",",
"width",
",",
"height",
"}",
")",
"{",
"const",
"[",
"isDragging",
",",
"setIsDragging",
"]",
"=",
"useState",
"(",
"false",
")",
";",
"const",
"onResizeFn",
"=",
"React",
".",
"useRef",
"<",
"any",
">",
"(",
"onResize",
")",
";",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"return",
"height",
".",
"onChange",
"(",
"(",
")",
"=>",
"{",
"onResizeFn",
".",
"current",
"?.",
"(",
")",
";",
"}",
")",
";",
"}",
",",
"[",
"height",
"]",
")",
";",
"const",
"handleDrag",
"=",
"React",
".",
"useCallback",
"(",
"(",
"event",
",",
"info",
")",
"=>",
"{",
"const",
"newHeight",
"=",
"height",
".",
"get",
"(",
")",
"+",
"info",
".",
"delta",
".",
"y",
";",
"const",
"h",
"=",
"clamp",
"(",
"newHeight",
",",
"200",
",",
"900",
")",
";",
"height",
".",
"set",
"(",
"h",
")",
";",
"}",
",",
"[",
"height",
"]",
")",
";",
"return",
"(",
"<",
"div",
">",
"<",
"motion",
".",
"div",
"style",
"=",
"{",
"{",
"height",
",",
"width",
",",
"cursor",
":",
"isDragging",
"?",
"\"row-resize\"",
":",
"\"\"",
",",
"}",
"}",
">",
"{",
"children",
"}",
"<",
"/motion.div>",
"<",
"div",
"style",
"=",
"{",
"{",
"display",
":",
"\"flex\"",
",",
"justifyContent",
":",
"\"center\"",
",",
"marginTop",
":",
"0",
"}",
"}",
">",
"<",
"motion",
".",
"div",
"style",
"=",
"{",
"{",
"cursor",
":",
"\"row-resize\"",
",",
"textAlign",
":",
"\"center\"",
",",
"}",
"}",
"drag",
"=",
"\"y\"",
"dragConstraints",
"=",
"{",
"{",
"top",
":",
"0",
",",
"left",
":",
"0",
",",
"right",
":",
"0",
",",
"bottom",
":",
"0",
"}",
"}",
"dragElastic",
"=",
"{",
"0",
"}",
"dragMomentum",
"=",
"{",
"false",
"}",
"onDrag",
"=",
"{",
"handleDrag",
"}",
"onDragEnd",
"=",
"{",
"(",
")",
"=>",
"{",
"setIsDragging",
"(",
"false",
")",
";",
"}",
"}",
"onDragStart",
"=",
"{",
"(",
")",
"=>",
"{",
"setIsDragging",
"(",
"true",
")",
";",
"}",
"}",
">",
"<",
"Icon",
"icon",
"=",
"\"drag-handle-horizontal\"",
"style",
"=",
"{",
"{",
"left",
":",
"\"50%\"",
",",
"cursor",
":",
"\"ns-resize\"",
"}",
"}",
"/>",
"<",
"/motion.div>",
"<",
"/div>",
"<",
"/div>);",
"}",
"export",
"default",
"React",
".",
"memo",
"(",
"Resizable",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
3,
null,
3,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
9,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660177 | [
"import",
"{",
"MotionValue",
",",
"useMotionValue",
"}",
"from",
"\"framer-motion\"",
";",
"import",
"throttle",
"from",
"\"lodash/throttle\"",
";",
"import",
"React",
",",
"{",
"useEffect",
"}",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"JobTerminal",
"from",
"\"../shared/JobTerminal\"",
";",
"import",
"JobTerminalManager",
"from",
"\"../shared/JobTerminalManager\"",
";",
"import",
"{",
"configAtom",
"}",
"from",
"\"../shared/state/atoms\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"Resizable",
"from",
"\"./Resizable\"",
";",
"interface",
"ICommandProps",
"{",
"taskID",
":",
"string",
";",
"index",
":",
"number",
";",
"containerWidth",
":",
"MotionValue",
";",
"}",
"const",
"CommandOutputXterm",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"taskID",
",",
"index",
",",
"containerWidth",
"}",
")",
"=>",
"{",
"const",
"elRef",
"=",
"React",
".",
"useRef",
"<",
"HTMLDivElement",
">",
"(",
"null",
")",
";",
"const",
"terminal",
"=",
"React",
".",
"useRef",
"<",
"JobTerminal",
"|",
"null",
">",
"(",
"null",
")",
";",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"const",
"currentTheme",
"=",
"React",
".",
"useRef",
"<",
"any",
">",
"(",
"null",
")",
";",
"const",
"themeTimeout",
"=",
"React",
".",
"useRef",
"<",
"any",
">",
"(",
"null",
")",
";",
"const",
"height",
"=",
"useMotionValue",
"(",
"400",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"setTheme",
"=",
"(",
")",
"=>",
"{",
"if",
"(",
"terminal",
"&&",
"terminal",
".",
"current",
")",
"{",
"terminal",
".",
"current",
".",
"setTheme",
"(",
"theme",
")",
";",
"if",
"(",
"currentTheme",
"&&",
"currentTheme",
".",
"current",
")",
"{",
"currentTheme",
".",
"current",
"=",
"theme",
";",
"}",
"}",
"}",
";",
"const",
"removeTheme",
"=",
"(",
")",
"=>",
"{",
"if",
"(",
"terminal",
"&&",
"terminal",
".",
"current",
")",
"{",
"terminal",
".",
"current",
".",
"removeTheme",
"(",
")",
";",
"}",
"}",
";",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"elRef",
"&&",
"elRef",
".",
"current",
")",
"{",
"const",
"parentWidth",
"=",
"elRef",
".",
"current",
".",
"parentElement",
"?.",
"parentElement",
"?.",
"getBoundingClientRect",
"(",
")",
".",
"width",
"??",
"800",
";",
"const",
"parentHeight",
"=",
"elRef",
".",
"current",
".",
"parentElement",
"?.",
"parentElement",
"?.",
"getBoundingClientRect",
"(",
")",
".",
"height",
"??",
"400",
";",
"height",
".",
"set",
"(",
"parentHeight",
")",
";",
"containerWidth",
".",
"set",
"(",
"parentWidth",
")",
";",
"if",
"(",
"terminal",
".",
"current",
"===",
"null",
")",
"{",
"terminal",
".",
"current",
"=",
"JobTerminalManager",
".",
"getInstance",
"(",
")",
".",
"createJobTerminal",
"(",
"taskID",
")",
";",
"terminal",
".",
"current",
".",
"attachTo",
"(",
"elRef",
".",
"current",
",",
"config",
".",
"terminalRenderer",
"??",
"\"canvas\"",
")",
";",
"}",
"}",
"}",
",",
"[",
"]",
")",
";",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"!",
"config",
".",
"enableTerminalTheme",
")",
"{",
"removeTheme",
"(",
")",
";",
"}",
"setTheme",
"(",
")",
";",
"return",
"(",
")",
"=>",
"{",
"removeTheme",
"(",
")",
";",
"if",
"(",
"themeTimeout",
".",
"current",
")",
"{",
"clearTimeout",
"(",
"themeTimeout",
".",
"current",
")",
";",
"}",
"}",
";",
"}",
",",
"[",
"theme",
",",
"config",
",",
"index",
"]",
")",
";",
"const",
"handleResize",
"=",
"React",
".",
"useCallback",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"!",
"terminal",
"||",
"!",
"terminal",
".",
"current",
")",
"{",
"return",
";",
"}",
"setTimeout",
"(",
"(",
")",
"=>",
"{",
"terminal",
".",
"current",
"?.",
"fitAddon",
".",
"fit",
"(",
")",
";",
"}",
",",
"0",
")",
";",
"}",
",",
"[",
"]",
")",
";",
"const",
"handleResizeThrottled",
"=",
"React",
".",
"useCallback",
"(",
"throttle",
"(",
"handleResize",
",",
"50",
")",
",",
"[",
"]",
")",
";",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"return",
"containerWidth",
".",
"onChange",
"(",
"(",
")",
"=>",
"{",
"handleResizeThrottled",
"(",
")",
";",
"}",
")",
";",
"}",
",",
"[",
"]",
")",
";",
"return",
"(",
"<",
"Resizable",
"onResize",
"=",
"{",
"handleResize",
"}",
"width",
"=",
"{",
"containerWidth",
"}",
"height",
"=",
"{",
"height",
"}",
">",
"<",
"div",
"ref",
"=",
"{",
"elRef",
"}",
"style",
"=",
"{",
"{",
"marginTop",
":",
"10",
",",
"width",
":",
"\"100%\"",
",",
"height",
":",
"\"100%\"",
",",
"whiteSpace",
":",
"\"pre-wrap\"",
",",
"}",
"}",
"/>",
"<",
"/Resizable>);",
"}",
")",
";",
"export",
"default",
"CommandOutputXterm",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
35,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7346,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660178 | [
"import",
"{",
"Alert",
",",
"Button",
",",
"Collapse",
",",
"H5",
",",
"ResizeSensor",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"{",
"useMotionValue",
"}",
"from",
"\"framer-motion\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"JobTerminalManager",
"from",
"\"../shared/JobTerminalManager\"",
";",
"import",
"{",
"configAtom",
"}",
"from",
"\"../shared/state/atoms\"",
";",
"import",
"{",
"ACTION_TYPES",
",",
"useJobs",
"}",
"from",
"\"../shared/stores/JobStore\"",
";",
"import",
"{",
"useProjects",
"}",
"from",
"\"../shared/stores/ProjectStore\"",
";",
"import",
"{",
"useSockets",
"}",
"from",
"\"../shared/stores/SocketStore\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"UpdateCommandDrawer",
"from",
"\"../UpdateCommandDrawer\"",
";",
"import",
"CommandOutputXterm",
"from",
"\"./CommandOutputXterm\"",
";",
"const",
"Container",
"=",
"styled",
".",
"div",
"`\n display: flex;\n flex-direction: column;\n /* overflow: auto;\n overflow-y: hidden; */\n`",
";",
"const",
"CommandTitleActions",
"=",
"styled",
".",
"div",
"`\n display: flex;\n max-width: 100%;\n justify-content: space-between;\n align-items: center;\n & > h5 {\n margin: 0 0 4px;\n }\n & > * {\n margin-left: 1rem;\n }\n`",
";",
"const",
"CommandOutputButtonsContainer",
"=",
"styled",
".",
"div",
"`\n display: flex;\n justify-content: space-around;\n flex-wrap: wrap;\n width: 15%;\n`",
";",
"const",
"CommandHeader",
"=",
"styled",
".",
"div",
"`\n display: flex;\n justify-content: space-between;\n align-items: center;\n`",
";",
"interface",
"ICommandProps",
"{",
"command",
":",
"IProjectCommand",
";",
"projectPath",
":",
"string",
";",
"projectId",
":",
"string",
";",
"index",
":",
"number",
";",
"}",
"function",
"getJobData",
"(",
"state",
",",
"taskID",
")",
"{",
"return",
"state",
"[",
"taskID",
"]",
"||",
"\"\"",
";",
"}",
"const",
"Command",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"command",
",",
"projectPath",
",",
"index",
",",
"projectId",
"}",
")",
"=>",
"{",
"const",
"[",
"isOutputOpen",
",",
"setOutputOpen",
"]",
"=",
"React",
".",
"useState",
"(",
"true",
")",
";",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"const",
"{",
"subscribeToTaskSocket",
",",
"unsubscribeFromTaskSocket",
",",
"restartTask",
"}",
"=",
"useSockets",
"(",
")",
";",
"const",
"[",
"isDrawerOpen",
",",
"setDrawerOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"taskID",
"=",
"command",
".",
"_id",
";",
"const",
"terminalManager",
"=",
"JobTerminalManager",
".",
"getInstance",
"(",
")",
";",
"const",
"{",
"state",
":",
"jobState",
",",
"dispatch",
"}",
"=",
"useJobs",
"(",
")",
";",
"const",
"{",
"activeProject",
",",
"deleteTask",
",",
"updateTask",
"}",
"=",
"useProjects",
"(",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"containerWidth",
"=",
"useMotionValue",
"(",
"0",
")",
";",
"const",
"[",
"isDeleteAlertOpen",
",",
"setIsDeleteAlertOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"deleteCommand",
"=",
"async",
"(",
")",
"=>",
"{",
"try",
"{",
"await",
"deleteTask",
"(",
"activeProject",
".",
"_id",
",",
"taskID",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"console",
".",
"error",
"(",
"\"Error deleting task\"",
")",
";",
"}",
"}",
";",
"const",
"updateJobProcess",
"=",
"(",
"jobProcess",
")",
"=>",
"{",
"dispatch",
"(",
"{",
"taskID",
",",
"type",
":",
"ACTION_TYPES",
".",
"UPDATE_JOB_PROCESS",
",",
"process",
":",
"jobProcess",
",",
"}",
")",
";",
"}",
";",
"const",
"clearJobOutput",
"=",
"(",
")",
"=>",
"{",
"dispatch",
"(",
"{",
"type",
":",
"ACTION_TYPES",
".",
"CLEAR_OUTPUT",
",",
"taskID",
",",
"}",
")",
";",
"terminalManager",
".",
"clearTerminalInRoom",
"(",
"taskID",
")",
";",
"}",
";",
"const",
"startJob",
"=",
"(",
")",
"=>",
"{",
"clearJobOutput",
"(",
")",
";",
"const",
"shell",
"=",
"command",
".",
"shell",
"||",
"activeProject",
".",
"shell",
"||",
"config",
".",
"shell",
"||",
"\"\"",
";",
"subscribeToTaskSocket",
"(",
"taskID",
",",
"command",
",",
"projectPath",
",",
"shell",
")",
";",
"updateTask",
"(",
"projectId",
",",
"command",
".",
"_id",
",",
"{",
"...",
"command",
",",
"lastExecutedAt",
":",
"new",
"Date",
"(",
")",
",",
"}",
")",
";",
"}",
";",
"const",
"stopJob",
"=",
"(",
")",
"=>",
"{",
"const",
"process",
"=",
"getJobData",
"(",
"jobState",
",",
"taskID",
")",
".",
"process",
";",
"const",
"{",
"pid",
"}",
"=",
"process",
";",
"unsubscribeFromTaskSocket",
"(",
"taskID",
",",
"pid",
")",
";",
"updateJobProcess",
"(",
"{",
"pid",
":",
"-",
"1",
",",
"}",
")",
";",
"}",
";",
"const",
"restartJob",
"=",
"(",
")",
"=>",
"{",
"const",
"shell",
"=",
"command",
".",
"shell",
"||",
"activeProject",
".",
"shell",
"||",
"config",
".",
"shell",
"||",
"\"\"",
";",
"const",
"process",
"=",
"getJobData",
"(",
"jobState",
",",
"taskID",
")",
".",
"process",
";",
"const",
"{",
"pid",
"}",
"=",
"process",
";",
"restartTask",
"(",
"taskID",
",",
"pid",
",",
"command",
",",
"projectPath",
",",
"shell",
")",
";",
"updateJobProcess",
"(",
"{",
"pid",
":",
"-",
"1",
",",
"}",
")",
";",
"clearJobOutput",
"(",
")",
";",
"updateTask",
"(",
"projectId",
",",
"command",
".",
"_id",
",",
"{",
"...",
"command",
",",
"lastExecutedAt",
":",
"new",
"Date",
"(",
")",
",",
"}",
")",
";",
"}",
";",
"const",
"isProcessRunning",
"=",
"(",
")",
":",
"boolean",
"=>",
"{",
"return",
"getJobData",
"(",
"jobState",
",",
"taskID",
")",
".",
"isRunning",
"||",
"false",
";",
"}",
";",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"<",
"Container",
">",
"<",
"CommandHeader",
">",
"<",
"CommandTitleActions",
">",
"<",
"H5",
"data",
"-",
"testid",
"=",
"\"command-name\"",
">",
"{",
"command",
".",
"name",
"}",
"<",
"/H5>",
"{",
"isProcessRunning",
"(",
")",
"?",
"(",
"<",
"React",
".",
"Fragment",
">",
"<",
"Button",
"data",
"-",
"testid",
"=",
"\"stop-task-button\"",
"intent",
"=",
"\"danger\"",
"icon",
"=",
"\"stop\"",
"minimal",
"disabled",
"=",
"{",
"!",
"isProcessRunning",
"(",
")",
"}",
"text",
"=",
"{",
"\"Stop\"",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"stopJob",
"(",
")",
"}",
"/>",
"<",
"Button",
"data",
"-",
"testid",
"=",
"\"restart-task-button\"",
"intent",
"=",
"\"primary\"",
"icon",
"=",
"\"refresh\"",
"minimal",
"disabled",
"=",
"{",
"!",
"isProcessRunning",
"(",
")",
"}",
"text",
"=",
"{",
"\"Restart\"",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"restartJob",
"(",
")",
"}",
"/>",
"<",
"/React.Fragment>) : (",
"<",
"Button",
"data",
"-",
"testid",
"=",
"\"start-task-button\"",
"icon",
"=",
"\"play\"",
"intent",
"=",
"\"success\"",
"minimal",
"disabled",
"=",
"{",
"isProcessRunning",
"(",
")",
"}",
"text",
"=",
"{",
"\"Start\"",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"startJob",
"(",
")",
"}",
"/>)}",
"<",
"/CommandTitleActions>",
"<",
"span",
"data",
"-",
"testid",
"=",
"\"command-cmd\"",
"className",
"=",
"\"truncate\"",
"style",
"=",
"{",
"{",
"maxWidth",
":",
"\"50%\"",
"}",
"}",
"title",
"=",
"{",
"command",
".",
"cmd",
"}",
">",
"{",
"command",
".",
"cmd",
"}",
"<",
"/span>",
"<",
"CommandOutputButtonsContainer",
">",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setDrawerOpen",
"(",
"true",
")",
"}",
"icon",
"=",
"\"edit\"",
"minimal",
"=",
"{",
"true",
"}",
"title",
"=",
"\"Edit Task\"",
"/",
">",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"clearJobOutput",
"(",
")",
"}",
"icon",
"=",
"\"eraser\"",
"minimal",
"=",
"{",
"true",
"}",
"title",
"=",
"\"Clear Output\"",
"/",
">",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setOutputOpen",
"(",
"!",
"isOutputOpen",
")",
"}",
"icon",
"=",
"{",
"isOutputOpen",
"?",
"\"eye-off\"",
":",
"\"eye-open\"",
"}",
"minimal",
"=",
"{",
"true",
"}",
"title",
"=",
"{",
"isOutputOpen",
"?",
"\"Hide Output\"",
":",
"\"Show Output\"",
"}",
"/",
">",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setIsDeleteAlertOpen",
"(",
"true",
")",
"}",
"icon",
"=",
"\"trash\"",
"minimal",
"=",
"{",
"true",
"}",
"data",
"-",
"testid",
"=",
"\"delete-task-button\"",
"title",
"=",
"{",
"isProcessRunning",
"(",
")",
"?",
"\"Cannot delete while task is running.\"",
":",
"\"Delete Task\"",
"}",
"intent",
"=",
"\"danger\"",
"disabled",
"=",
"{",
"isProcessRunning",
"(",
")",
"}",
"/",
">",
"<",
"/CommandOutputButtonsContainer>",
"<",
"/CommandHeader>",
"<",
"Collapse",
"isOpen",
"=",
"{",
"isOutputOpen",
"}",
"keepChildrenMounted",
"=",
"{",
"true",
"}",
">",
"<",
"ResizeSensor",
"onResize",
"=",
"{",
"(",
"entries",
")",
"=>",
"{",
"const",
"width",
"=",
"entries",
"[",
"0",
"]",
".",
"contentRect",
".",
"width",
";",
"containerWidth",
".",
"set",
"(",
"width",
")",
";",
"}",
"}",
">",
"<",
"CommandOutputXterm",
"index",
"=",
"{",
"index",
"}",
"taskID",
"=",
"{",
"taskID",
"}",
"containerWidth",
"=",
"{",
"containerWidth",
"}",
"/",
">",
"<",
"/ResizeSensor>",
"<",
"/Collapse>",
"<",
"/Container>",
"<",
"UpdateCommandDrawer",
"isDrawerOpen",
"=",
"{",
"isDrawerOpen",
"}",
"setDrawerOpen",
"=",
"{",
"setDrawerOpen",
"}",
"command",
"=",
"{",
"command",
"}",
"/",
">",
"<",
"Alert",
"cancelButtonText",
"=",
"\"Cancel\"",
"confirmButtonText",
"=",
"\"Yes, Delete\"",
"className",
"=",
"{",
"theme",
"}",
"icon",
"=",
"\"trash\"",
"intent",
"=",
"\"danger\"",
"isOpen",
"=",
"{",
"isDeleteAlertOpen",
"}",
"onCancel",
"=",
"{",
"(",
")",
"=>",
"setIsDeleteAlertOpen",
"(",
"false",
")",
"}",
"onConfirm",
"=",
"{",
"(",
")",
"=>",
"deleteCommand",
"(",
")",
"}",
">",
"<",
"p",
"data",
"-",
"testid",
"=",
"\"delete-task-warning\"",
">",
"Are",
"you",
"sure",
"you",
"want",
"to",
"delete",
"task",
"<",
"b",
">",
"{",
"command",
".",
"name",
"}",
"<",
"/b>?",
"<",
"/p>",
"<",
"/Alert>",
"<",
"/React.Fragment>);",
"}",
")",
";",
"export",
"default",
"Command",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
7346,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660179 | [
"import",
"{",
"Card",
",",
"Elevation",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"Command",
"from",
"\"../Command/Command\"",
";",
"interface",
"ICommandsRowViewProps",
"{",
"commands",
":",
"IProjectCommand",
"[",
"]",
";",
"activeProject",
":",
"IProject",
";",
"}",
"const",
"CommandsRowView",
"=",
"(",
"{",
"commands",
",",
"activeProject",
",",
"}",
")",
"=>",
"{",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"{",
"commands",
".",
"map",
"(",
"(",
"command",
",",
"index",
")",
"=>",
"{",
"return",
"(",
"<",
"Card",
"id",
"=",
"{",
"`task-card-${",
"command",
".",
"_id",
"}`",
"}",
"key",
"=",
"{",
"command",
".",
"_id",
"}",
"elevation",
"=",
"{",
"Elevation",
".",
"ONE",
"}",
"style",
"=",
"{",
"{",
"margin",
":",
"20",
",",
"padding",
":",
"\"15px 15px 10px 15px\"",
"}",
"}",
">",
"<",
"Command",
"index",
"=",
"{",
"index",
"}",
"projectPath",
"=",
"{",
"activeProject",
".",
"path",
"}",
"projectId",
"=",
"{",
"activeProject",
".",
"_id",
"}",
"command",
"=",
"{",
"command",
"}",
"/",
">",
"<",
"/Card>);",
"}",
")",
"}",
"<",
"/React.Fragment>);",
"}",
";",
"export",
"default",
"CommandsRowView",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660180 | [
"import",
"React",
"from",
"\"react\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"CommandsRowView",
"from",
"\"./CommandsRowView\"",
";",
"interface",
"ICommandsAreaProps",
"{",
"activeProject",
":",
"IProject",
";",
"}",
"const",
"Container",
"=",
"styled",
".",
"div",
"`\n height: calc(100% - 50px);\n overflow: auto;\n`",
";",
"const",
"EmptyContainer",
"=",
"styled",
".",
"div",
"`\n height: calc(100% - 50px);\n overflow: auto;\n display: flex;\n justify-content: center;\n align-items: center;\n font-size: 2em;\n & > span {\n padding: 10px;\n border-bottom: 1px solid #0a6640;\n }\n`",
";",
"const",
"CommandsArea",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"activeProject",
"}",
")",
"=>",
"{",
"const",
"commands",
"=",
"activeProject",
".",
"commands",
";",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"if",
"(",
"commands",
".",
"length",
"===",
"0",
")",
"{",
"return",
"(",
"<",
"EmptyContainer",
"theme",
"=",
"{",
"theme",
"}",
"className",
"=",
"\"main-container\"",
"data",
"-",
"testid",
"=",
"\"no-tasks-message\"",
">",
"Add",
"a",
"task",
"using",
"<",
"span",
">",
"New",
"Task",
"<",
"/span> button",
"<",
"/EmptyContainer>);",
"}",
"return",
"(",
"<",
"Container",
">",
"<",
"CommandsRowView",
"commands",
"=",
"{",
"commands",
"}",
"activeProject",
"=",
"{",
"activeProject",
"}",
"/",
">",
"{",
"}",
"{",
"}",
"<",
"/Container>);",
"}",
")",
";",
"export",
"default",
"CommandsArea",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660181 | [
"export",
"function",
"getYesterday",
"(",
")",
"{",
"const",
"yesterday",
"=",
"new",
"Date",
"(",
")",
";",
"yesterday",
".",
"setDate",
"(",
"yesterday",
".",
"getDate",
"(",
")",
"-",
"1",
")",
";",
"return",
"yesterday",
";",
"}"
] | [
null,
null,
26,
null,
null,
null,
null,
26,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660182 | [
"import",
"{",
"Button",
",",
"FormGroup",
",",
"InputGroup",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"{",
"Formik",
"}",
"from",
"\"formik\"",
";",
"import",
"React",
",",
"{",
"useState",
"}",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"{",
"v4",
"as",
"uuidv4",
"}",
"from",
"\"uuid\"",
";",
"import",
"{",
"getYesterday",
"}",
"from",
"\"../../utils/general\"",
";",
"import",
"{",
"isValidPath",
"}",
"from",
"\"../../utils/node\"",
";",
"import",
"{",
"configAtom",
"}",
"from",
"\"../shared/state/atoms\"",
";",
"import",
"{",
"useProjects",
"}",
"from",
"\"../shared/stores/ProjectStore\"",
";",
"const",
"initialCommand",
"=",
"{",
"_id",
":",
"\"\"",
",",
"name",
":",
"\"\"",
",",
"execDir",
":",
"\"\"",
",",
"cmd",
":",
"\"\"",
",",
"lastExecutedAt",
":",
"getYesterday",
"(",
")",
",",
"shell",
":",
"\"\"",
",",
"}",
";",
"const",
"Container",
"=",
"styled",
".",
"div",
"`\n height: 100%;\n overflow: auto;\n`",
";",
"interface",
"INewProjectFormProps",
"{",
"setDrawerOpen",
":",
"(",
"isOpen",
":",
"boolean",
")",
"=>",
"any",
";",
"}",
"const",
"NewProjectForm",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"setDrawerOpen",
"}",
")",
"=>",
"{",
"const",
"{",
"activeProject",
",",
"addTask",
"}",
"=",
"useProjects",
"(",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"[",
"errors",
",",
"setErrors",
"]",
"=",
"useState",
"<",
"any",
">",
"(",
"{",
"path",
":",
"\"\"",
",",
"}",
")",
";",
"const",
"validatePath",
"=",
"async",
"(",
"value",
")",
"=>",
"{",
"try",
"{",
"let",
"error",
"=",
"\"\"",
";",
"if",
"(",
"!",
"value",
")",
"{",
"return",
"\"\"",
";",
"}",
"const",
"isPathValid",
"=",
"await",
"isValidPath",
"(",
"config",
",",
"value",
")",
";",
"if",
"(",
"!",
"isPathValid",
")",
"{",
"error",
"=",
"\"This path doesn't exist. You can leave path empty.\"",
";",
"}",
"return",
"error",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"}",
"}",
";",
"const",
"handleSubmit",
"=",
"async",
"(",
"values",
",",
"actions",
")",
":",
"Promise",
"<",
"any",
">",
"=>",
"{",
"try",
"{",
"const",
"newCommand",
"=",
"{",
"...",
"values",
",",
"_id",
":",
"uuidv4",
"(",
")",
",",
"}",
";",
"const",
"pathError",
"=",
"await",
"validatePath",
"(",
"newCommand",
".",
"execDir",
")",
";",
"const",
"shellError",
"=",
"await",
"validatePath",
"(",
"newCommand",
".",
"shell",
")",
";",
"if",
"(",
"pathError",
"||",
"shellError",
")",
"{",
"actions",
".",
"setSubmitting",
"(",
"false",
")",
";",
"setErrors",
"(",
"{",
"path",
":",
"pathError",
",",
"shell",
":",
"shellError",
",",
"}",
")",
";",
"return",
";",
"}",
"actions",
".",
"setSubmitting",
"(",
"true",
")",
";",
"await",
"addTask",
"(",
"activeProject",
".",
"_id",
",",
"newCommand",
")",
";",
"actions",
".",
"setSubmitting",
"(",
"false",
")",
";",
"setDrawerOpen",
"(",
"false",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"error",
")",
";",
"actions",
".",
"setSubmitting",
"(",
"false",
")",
";",
"}",
"}",
";",
"return",
"(",
"<",
"Container",
">",
"<",
"Formik",
"initialValues",
"=",
"{",
"initialCommand",
"}",
"onSubmit",
"=",
"{",
"handleSubmit",
"}",
"render",
"=",
"{",
"(",
"props",
")",
"=>",
"(",
"<",
"form",
"onSubmit",
"=",
"{",
"props",
".",
"handleSubmit",
"}",
"data",
"-",
"testid",
"=",
"\"new-task-form\"",
">",
"<",
"FormGroup",
"label",
"=",
"\"Name\"",
"labelFor",
"=",
"\"name\"",
"helperText",
"=",
"\"A short name for your task.\"",
">",
"<",
"InputGroup",
"required",
"=",
"{",
"true",
"}",
"placeholder",
"=",
"\"E.g., Start DB\"",
"id",
"=",
"\"name\"",
"type",
"=",
"\"text\"",
"onChange",
"=",
"{",
"props",
".",
"handleChange",
"}",
"value",
"=",
"{",
"props",
".",
"values",
".",
"name",
"}",
"autoFocus",
"/",
">",
"<",
"/FormGroup>",
"<",
"FormGroup",
"label",
"=",
"\"Task\"",
"labelFor",
"=",
"\"cmd\"",
"helperText",
"=",
"\"Actual task to run in terminal.\"",
">",
"<",
"InputGroup",
"required",
"=",
"{",
"true",
"}",
"id",
"=",
"\"cmd\"",
"type",
"=",
"\"text\"",
"placeholder",
"=",
"\"e.g., yarn test\"",
"onChange",
"=",
"{",
"props",
".",
"handleChange",
"}",
"value",
"=",
"{",
"props",
".",
"values",
".",
"cmd",
"}",
"/",
">",
"<",
"/FormGroup>",
"<",
"FormGroup",
"label",
"=",
"\"Path (optional)\"",
"labelFor",
"=",
"\"execDir\"",
"intent",
"=",
"{",
"errors",
".",
"path",
"?",
"\"danger\"",
":",
"\"none\"",
"}",
"helperText",
"=",
"{",
"errors",
".",
"path",
"?",
"(",
"errors",
".",
"path",
")",
":",
"(",
"<",
"span",
">",
"Use",
"this",
"{",
"\" \"",
"}",
"<",
"b",
">",
"<",
"i",
">",
"only",
"<",
"/i>",
"<",
"/b>{\" \"}",
"when",
"task",
"path",
"is",
"different",
"from",
"the",
"project",
"path",
".",
"<",
"/span>)}>",
"<",
"InputGroup",
"placeholder",
"=",
"\"E.g., Absolute path where to execute the task.\"",
"id",
"=",
"\"execDir\"",
"type",
"=",
"\"text\"",
"onChange",
"=",
"{",
"props",
".",
"handleChange",
"}",
"value",
"=",
"{",
"props",
".",
"values",
".",
"execDir",
"}",
"/",
">",
"<",
"/FormGroup>",
"<",
"FormGroup",
"label",
"=",
"\"Shell (optional)\"",
"labelFor",
"=",
"\"shell\"",
"intent",
"=",
"{",
"errors",
".",
"shell",
"?",
"\"danger\"",
":",
"\"none\"",
"}",
"helperText",
"=",
"{",
"errors",
".",
"shell",
"?",
"(",
"errors",
".",
"shell",
")",
":",
"(",
"<",
"span",
">",
"Absolute",
"path",
"to",
"the",
"shell",
".",
"Overrides",
"project",
"&",
"apos",
";",
"s",
"shell",
"or",
"global",
"shell",
".",
"<",
"/span>)}>",
"<",
"InputGroup",
"placeholder",
"=",
"{",
"navigator",
".",
"platform",
".",
"toLowerCase",
"(",
")",
"===",
"\"win32\"",
"?",
"\"C:\\\\Windows\\\\System32\\\\cmd.exe\"",
":",
"\"/bin/sh\"",
"}",
"id",
"=",
"\"shell\"",
"type",
"=",
"\"text\"",
"onChange",
"=",
"{",
"props",
".",
"handleChange",
"}",
"value",
"=",
"{",
"props",
".",
"values",
".",
"shell",
"}",
"/",
">",
"<",
"/FormGroup>",
"<",
"FormGroup",
">",
"<",
"Button",
"data",
"-",
"testid",
"=",
"\"save-task-button\"",
"intent",
"=",
"\"primary\"",
"text",
"=",
"\"Save Task\"",
"type",
"=",
"\"submit\"",
"loading",
"=",
"{",
"props",
".",
"isSubmitting",
"}",
"large",
"=",
"{",
"true",
"}",
"/",
">",
"<",
"/FormGroup>",
"<",
"/form>)}/",
">",
"<",
"/Container>);",
"}",
")",
";",
"export",
"default",
"NewProjectForm",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660183 | [
"import",
"{",
"Drawer",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"NewCommandForm",
"from",
"\"./NewCommandForm\"",
";",
"const",
"DrawerContainer",
"=",
"styled",
".",
"div",
"`\n height: 100%;\n padding: 2.5em;\n`",
";",
"interface",
"INewDrawerProps",
"{",
"isDrawerOpen",
":",
"boolean",
";",
"setDrawerOpen",
":",
"(",
"isOpen",
":",
"boolean",
")",
"=>",
"any",
";",
"}",
"const",
"NewCommandDrawer",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"isDrawerOpen",
",",
"setDrawerOpen",
"}",
")",
"=>",
"{",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"return",
"(",
"<",
"Drawer",
"className",
"=",
"{",
"theme",
"}",
"isOpen",
"=",
"{",
"isDrawerOpen",
"}",
"title",
"=",
"\"Add Task\"",
"onClose",
"=",
"{",
"(",
")",
"=>",
"setDrawerOpen",
"(",
"false",
")",
"}",
">",
"<",
"DrawerContainer",
">",
"<",
"NewCommandForm",
"setDrawerOpen",
"=",
"{",
"setDrawerOpen",
"}",
"/>",
"<",
"/DrawerContainer>",
"<",
"/Drawer>);",
"}",
")",
";",
"export",
"default",
"NewCommandDrawer",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660184 | [
"import",
"{",
"Button",
",",
"FormGroup",
",",
"InputGroup",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"{",
"useFormik",
"}",
"from",
"\"formik\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../utils/electron\"",
";",
"interface",
"IProjectFormProps",
"{",
"initialValues",
":",
"IProject",
";",
"onSubmit",
":",
"(",
"values",
":",
"IProject",
")",
"=>",
"Promise",
"<",
"any",
">",
";",
"validate",
":",
"(",
"values",
":",
"IProject",
")",
"=>",
"Promise",
"<",
"Partial",
"<",
"IProject",
">",
">",
";",
"}",
"const",
"ProjectForm",
"=",
"(",
"{",
"initialValues",
",",
"onSubmit",
",",
"validate",
",",
"}",
")",
"=>",
"{",
"const",
"formik",
"=",
"useFormik",
"(",
"{",
"initialValues",
",",
"onSubmit",
",",
"validate",
",",
"}",
")",
";",
"const",
"{",
"errors",
",",
"handleSubmit",
",",
"isValid",
",",
"isSubmitting",
",",
"getFieldProps",
",",
"dirty",
"}",
"=",
"formik",
";",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"<",
"form",
"data",
"-",
"testid",
"=",
"\"new-project-form\"",
"onSubmit",
"=",
"{",
"handleSubmit",
"}",
">",
"<",
"FormGroup",
"label",
"=",
"\"Project Name\"",
"labelFor",
"=",
"\"name\"",
"intent",
"=",
"{",
"errors",
".",
"name",
"?",
"\"danger\"",
":",
"\"none\"",
"}",
"helperText",
"=",
"{",
"errors",
".",
"name",
"?",
"errors",
".",
"name",
":",
"\"Will be auto-filled if you are using a package.json. Otherwise, choose a name.\"",
"}",
">",
"<",
"InputGroup",
"id",
"=",
"\"name\"",
"type",
"=",
"\"text\"",
"required",
"=",
"{",
"true",
"}",
"placeholder",
"=",
"\"My Awesome Project\"",
"autoFocus",
"{",
"...",
"getFieldProps",
"(",
"\"name\"",
")",
"}",
"/>",
"<",
"/FormGroup>",
"<",
"FormGroup",
"label",
"=",
"\"Project Path\"",
"labelFor",
"=",
"\"path\"",
"intent",
"=",
"{",
"errors",
".",
"path",
"?",
"\"danger\"",
":",
"\"none\"",
"}",
"helperText",
"=",
"{",
"errors",
".",
"path",
"?",
"(",
"errors",
".",
"path",
")",
":",
"isRunningInElectron",
"(",
")",
"?",
"(",
"\"Absolute path to the project directory. Will be auto-filled if a package.json uploaded.\"",
")",
":",
"(",
"<",
"span",
">",
"Absolute",
"path",
"to",
"the",
"project",
"directory",
".",
"Will",
"be",
"auto",
"-",
"filled",
"if",
"{",
"\" \"",
"}",
"<",
"i",
">",
"tenHands",
".",
"path",
"<",
"/i> exists in package.json.",
"<",
"/span>)}>",
"<",
"InputGroup",
"required",
"=",
"{",
"true",
"}",
"id",
"=",
"\"path\"",
"type",
"=",
"\"text\"",
"placeholder",
"=",
"{",
"navigator",
".",
"platform",
".",
"toLowerCase",
"(",
")",
"===",
"\"win32\"",
"?",
"\"D:\\\\AllProjects\\\\MyProjectDirectory\"",
":",
"\"/home/all-projects/my-project\"",
"}",
"{",
"...",
"getFieldProps",
"(",
"\"path\"",
")",
"}",
"/>",
"<",
"/FormGroup>",
"<",
"FormGroup",
"label",
"=",
"\"Shell (Optional)\"",
"labelFor",
"=",
"\"shell\"",
"intent",
"=",
"{",
"errors",
".",
"shell",
"?",
"\"danger\"",
":",
"\"none\"",
"}",
"helperText",
"=",
"{",
"errors",
".",
"shell",
"?",
"(",
"errors",
".",
"shell",
")",
":",
"(",
"<",
"span",
">",
"Absolute",
"path",
"to",
"the",
"shell",
".",
"<",
"b",
">",
"Default",
":",
"<",
"/b>{\" \"}",
"<",
"pre",
"className",
"=",
"\"pre-inline\"",
">",
"cmd",
".",
"exe",
"<",
"/pre> on Windows and{\" \"}",
"<",
"pre",
"className",
"=",
"\"pre-inline\"",
">",
"/bin/sh",
"<",
"/pre> on unix.",
"<",
"/span>)}>",
"<",
"InputGroup",
"id",
"=",
"\"shell\"",
"type",
"=",
"\"text\"",
"placeholder",
"=",
"{",
"navigator",
".",
"platform",
".",
"toLowerCase",
"(",
")",
"===",
"\"win32\"",
"?",
"\"C:\\\\Windows\\\\System32\\\\cmd.exe\"",
":",
"\"/bin/sh\"",
"}",
"{",
"...",
"getFieldProps",
"(",
"\"shell\"",
")",
"}",
"/>",
"<",
"/FormGroup>",
"<",
"FormGroup",
">",
"<",
"Button",
"data",
"-",
"testid",
"=",
"\"save-project-button\"",
"intent",
"=",
"\"primary\"",
"text",
"=",
"\"Save Project\"",
"type",
"=",
"\"submit\"",
"loading",
"=",
"{",
"isSubmitting",
"}",
"disabled",
"=",
"{",
"!",
"isValid",
"||",
"!",
"dirty",
"}",
"large",
"=",
"{",
"true",
"}",
"/",
">",
"<",
"/FormGroup>",
"<",
"/form>",
"<",
"/React.Fragment>);",
"}",
";",
"export",
"default",
"ProjectForm",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660185 | [
"export",
"const",
"hasProjectWithSameName",
"=",
"(",
"projects",
",",
"newProjectName",
")",
":",
"boolean",
"=>",
"{",
"const",
"existingNames",
"=",
"projects",
".",
"map",
"(",
"(",
"project",
")",
"=>",
"project",
".",
"name",
".",
"toLowerCase",
"(",
")",
")",
";",
"const",
"hasProject",
"=",
"existingNames",
".",
"includes",
"(",
"newProjectName",
".",
"toLowerCase",
"(",
")",
")",
";",
"return",
"hasProject",
";",
"}",
";",
"export",
"const",
"hasDifferentProjectWithSameName",
"=",
"(",
"projects",
",",
"newProjectName",
",",
"thisProject",
")",
":",
"boolean",
"=>",
"{",
"const",
"otherProjects",
"=",
"projects",
".",
"filter",
"(",
"(",
"project",
")",
"=>",
"project",
".",
"_id",
"!==",
"thisProject",
".",
"_id",
")",
";",
"const",
"existingNames",
"=",
"otherProjects",
".",
"map",
"(",
"(",
"project",
")",
"=>",
"project",
".",
"name",
".",
"toLowerCase",
"(",
")",
")",
";",
"const",
"hasProject",
"=",
"existingNames",
".",
"includes",
"(",
"newProjectName",
".",
"toLowerCase",
"(",
")",
")",
";",
"return",
"hasProject",
";",
"}",
";"
] | [
null,
null,
8,
null,
null,
5,
null,
2,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
5,
null,
2,
null,
1128,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660186 | [
"import",
"{",
"isValidPath",
"}",
"from",
"\"../../utils/node\"",
";",
"import",
"{",
"hasDifferentProjectWithSameName",
"}",
"from",
"\"../../utils/projects\"",
";",
"export",
"async",
"function",
"validateEditProjectForm",
"(",
"values",
",",
"allProjects",
",",
"thisProject",
",",
"config",
")",
"{",
"const",
"errors",
"=",
"{",
"}",
";",
"if",
"(",
"!",
"values",
".",
"name",
")",
"{",
"errors",
".",
"name",
"=",
"\"Cannot be empty.\"",
";",
"}",
"else",
"if",
"(",
"hasDifferentProjectWithSameName",
"(",
"allProjects",
",",
"values",
".",
"name",
",",
"thisProject",
")",
")",
"{",
"errors",
".",
"name",
"=",
"\"Project name already exists.\"",
";",
"}",
"if",
"(",
"!",
"values",
".",
"path",
")",
"{",
"errors",
".",
"path",
"=",
"\"Cannot be empty.\"",
";",
"}",
"else",
"if",
"(",
"!",
"(",
"await",
"isValidPath",
"(",
"config",
",",
"values",
".",
"path",
")",
")",
")",
"{",
"errors",
".",
"path",
"=",
"\"This path doesn't exist.\"",
";",
"}",
"if",
"(",
"values",
".",
"shell",
"&&",
"!",
"(",
"await",
"isValidPath",
"(",
"config",
",",
"values",
".",
"shell",
")",
")",
")",
"{",
"errors",
".",
"shell",
"=",
"\"This path doesn't exist.\"",
";",
"}",
"return",
"errors",
";",
"}"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
1128,
null,
5,
null,
1128,
null,
866,
null,
null,
null,
20,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660187 | [
"import",
"React",
",",
"{",
"useCallback",
",",
"useMemo",
"}",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"{",
"configAtom",
"}",
"from",
"\"../shared/state/atoms\"",
";",
"import",
"{",
"useProjects",
"}",
"from",
"\"../shared/stores/ProjectStore\"",
";",
"import",
"EditProjectForm",
"from",
"\"./EditProjectForm\"",
";",
"import",
"{",
"validateEditProjectForm",
"}",
"from",
"\"./project-form-validators\"",
";",
"interface",
"IEditProjectFormContainerProps",
"{",
"activeProject",
":",
"IProject",
";",
"setDrawerOpen",
":",
"(",
"isOpen",
":",
"boolean",
")",
"=>",
"any",
";",
"}",
"const",
"EditProjectFormContainer",
"=",
"(",
"{",
"activeProject",
",",
"setDrawerOpen",
",",
"}",
")",
"=>",
"{",
"const",
"{",
"projects",
",",
"updateProject",
"}",
"=",
"useProjects",
"(",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"initialValues",
"=",
"useMemo",
"(",
"(",
")",
"=>",
"(",
"{",
"...",
"activeProject",
",",
"}",
")",
",",
"[",
"activeProject",
"]",
")",
";",
"const",
"onSubmit",
"=",
"useCallback",
"(",
"async",
"(",
"values",
")",
":",
"Promise",
"<",
"any",
">",
"=>",
"{",
"try",
"{",
"await",
"updateProject",
"(",
"values",
".",
"_id",
",",
"values",
")",
";",
"setDrawerOpen",
"(",
"false",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"`onSubmit error: `",
",",
"error",
")",
";",
"}",
"}",
",",
"[",
"updateProject",
",",
"setDrawerOpen",
"]",
")",
";",
"const",
"validate",
"=",
"useCallback",
"(",
"async",
"(",
"values",
")",
":",
"Promise",
"<",
"Partial",
"<",
"IProject",
">",
">",
"=>",
"{",
"const",
"errors",
"=",
"await",
"validateEditProjectForm",
"(",
"values",
",",
"projects",
",",
"activeProject",
",",
"config",
")",
";",
"return",
"errors",
";",
"}",
",",
"[",
"activeProject",
",",
"config",
",",
"projects",
"]",
")",
";",
"const",
"formProps",
"=",
"React",
".",
"useMemo",
"(",
"(",
")",
"=>",
"(",
"{",
"initialValues",
",",
"validate",
",",
"onSubmit",
",",
"}",
")",
",",
"[",
"initialValues",
",",
"validate",
",",
"onSubmit",
"]",
")",
";",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"<",
"EditProjectForm",
"{",
"...",
"formProps",
"}",
"/",
">",
"<",
"/React.Fragment>);",
"}",
";",
"export",
"default",
"EditProjectFormContainer",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
6,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660188 | [
"import",
"{",
"Drawer",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"EditProjectFormContainer",
"from",
"\"./EditProjectFormContainer\"",
";",
"const",
"DrawerContainer",
"=",
"styled",
".",
"div",
"`\n height: 100%;\n padding: 2.5em;\n`",
";",
"interface",
"IEditProjectDrawerProps",
"{",
"isDrawerOpen",
":",
"boolean",
";",
"setDrawerOpen",
":",
"(",
"isOpen",
":",
"boolean",
")",
"=>",
"any",
";",
"activeProject",
":",
"IProject",
";",
"}",
"const",
"EditProjectDrawer",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"isDrawerOpen",
",",
"setDrawerOpen",
",",
"activeProject",
"}",
")",
"=>",
"{",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"return",
"(",
"<",
"Drawer",
"className",
"=",
"{",
"theme",
"}",
"isOpen",
"=",
"{",
"isDrawerOpen",
"}",
"title",
"=",
"\"Add Project\"",
"onClose",
"=",
"{",
"(",
")",
"=>",
"setDrawerOpen",
"(",
"false",
")",
"}",
">",
"<",
"DrawerContainer",
">",
"<",
"EditProjectFormContainer",
"activeProject",
"=",
"{",
"activeProject",
"}",
"setDrawerOpen",
"=",
"{",
"setDrawerOpen",
"}",
"/",
">",
"<",
"/DrawerContainer>",
"<",
"/Drawer>);",
"}",
")",
";",
"export",
"default",
"EditProjectDrawer",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660189 | [
"import",
"{",
"Icon",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"Draggable",
",",
"DraggableProvided",
"}",
"from",
"\"react-beautiful-dnd\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"interface",
"ICommandsOrderListItemProps",
"{",
"command",
":",
"IProjectCommand",
";",
"index",
":",
"number",
";",
"}",
"const",
"CommandItem",
"=",
"styled",
".",
"div",
"`\n padding: 1em;\n display: flex;\n justify-content: space-between;\n user-select: none;\n &:hover {\n border: 1px dotted gray;\n }\n`",
";",
"const",
"CommandsOrderListItem",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"command",
",",
"index",
"}",
")",
"=>",
"{",
"return",
"(",
"<",
"Draggable",
"draggableId",
"=",
"{",
"command",
".",
"_id",
"}",
"index",
"=",
"{",
"index",
"}",
">",
"{",
"(",
"provided",
")",
"=>",
"(",
"<",
"CommandItem",
"{",
"...",
"provided",
".",
"draggableProps",
"}",
"{",
"...",
"provided",
".",
"dragHandleProps",
"}",
"ref",
"=",
"{",
"provided",
".",
"innerRef",
"}",
">",
"<",
"span",
"data",
"-",
"testid",
"=",
"\"reorder-task-list-item\"",
">",
"{",
"command",
".",
"name",
"}",
"<",
"/span>",
"<",
"Icon",
"icon",
"=",
"{",
"\"drag-handle-horizontal\"",
"}",
"/",
">",
"<",
"/CommandItem>)}",
"<",
"/Draggable>);",
"}",
")",
";",
"export",
"default",
"CommandsOrderListItem",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660190 | [
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"Droppable",
",",
"DroppableProvided",
"}",
"from",
"\"react-beautiful-dnd\"",
";",
"import",
"CommandsOrderListItem",
"from",
"\"./CommandOrderListItem\"",
";",
"interface",
"ICommandsOrderListProps",
"{",
"commands",
":",
"IProjectCommand",
"[",
"]",
";",
"projectId",
":",
"string",
";",
"}",
"const",
"CommandsOrderList",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"commands",
",",
"projectId",
"}",
")",
"=>",
"{",
"if",
"(",
"commands",
".",
"length",
"===",
"0",
")",
"{",
"return",
"<",
"div",
">",
"No",
"tasks",
"in",
"the",
"project",
".",
"<",
"/div>;",
"}",
"return",
"(",
"<",
"Droppable",
"droppableId",
"=",
"{",
"projectId",
"}",
">",
"{",
"(",
"provided",
")",
"=>",
"(",
"<",
"div",
"ref",
"=",
"{",
"provided",
".",
"innerRef",
"}",
"{",
"...",
"provided",
".",
"droppableProps",
"}",
">",
"{",
"commands",
".",
"map",
"(",
"(",
"command",
",",
"index",
")",
"=>",
"{",
"return",
"(",
"<",
"CommandsOrderListItem",
"command",
"=",
"{",
"command",
"}",
"key",
"=",
"{",
"command",
".",
"_id",
"}",
"index",
"=",
"{",
"index",
"}",
"/",
">",
")",
";",
"}",
")",
"}",
"{",
"provided",
".",
"placeholder",
"}",
"<",
"/div>)}",
"<",
"/Droppable>);",
"}",
")",
";",
"export",
"default",
"CommandsOrderList",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660191 | [
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"DragDropContext",
",",
"DropResult",
"}",
"from",
"\"react-beautiful-dnd\"",
";",
"import",
"{",
"useProjects",
"}",
"from",
"\"../shared/stores/ProjectStore\"",
";",
"import",
"CommandsOrderList",
"from",
"\"./CommandsOrderList\"",
";",
"interface",
"ICommandsOrderListContainerProps",
"{",
"activeProject",
":",
"IProject",
";",
"}",
"const",
"CommandOrderListContainer",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"activeProject",
"}",
")",
"=>",
"{",
"const",
"{",
"reorderTasks",
"}",
"=",
"useProjects",
"(",
")",
";",
"const",
"[",
"commands",
",",
"setCommands",
"]",
"=",
"React",
".",
"useState",
"(",
"activeProject",
".",
"commands",
")",
";",
"const",
"saveNewCommandsOrder",
"=",
"(",
"reorderedCommands",
")",
"=>",
"{",
"const",
"save",
"=",
"async",
"(",
"commandsWithNewOrder",
")",
"=>",
"{",
"try",
"{",
"console",
".",
"info",
"(",
"\"Saving new commands order\"",
")",
";",
"reorderTasks",
"(",
"activeProject",
".",
"_id",
",",
"commandsWithNewOrder",
",",
"\"custom\"",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"Error Reordering:\"",
",",
"error",
")",
";",
"}",
"}",
";",
"save",
"(",
"reorderedCommands",
")",
";",
"}",
";",
"if",
"(",
"commands",
".",
"length",
"===",
"0",
")",
"{",
"return",
"<",
"div",
">",
"No",
"commands",
"in",
"the",
"project",
".",
"<",
"/div>;",
"}",
"const",
"onDragEnd",
"=",
"(",
"result",
")",
"=>",
"{",
"const",
"{",
"destination",
",",
"source",
"}",
"=",
"result",
";",
"if",
"(",
"!",
"destination",
")",
"{",
"return",
";",
"}",
"if",
"(",
"destination",
".",
"droppableId",
"===",
"source",
".",
"droppableId",
"&&",
"destination",
".",
"index",
"===",
"source",
".",
"index",
")",
"{",
"return",
";",
"}",
"const",
"newCommands",
"=",
"[",
"...",
"commands",
"]",
";",
"const",
"sourceCommand",
"=",
"newCommands",
"[",
"source",
".",
"index",
"]",
";",
"newCommands",
".",
"splice",
"(",
"source",
".",
"index",
",",
"1",
")",
";",
"newCommands",
".",
"splice",
"(",
"destination",
".",
"index",
",",
"0",
",",
"sourceCommand",
")",
";",
"setCommands",
"(",
"newCommands",
")",
";",
"saveNewCommandsOrder",
"(",
"newCommands",
")",
";",
"}",
";",
"return",
"(",
"<",
"DragDropContext",
"onDragEnd",
"=",
"{",
"onDragEnd",
"}",
">",
"<",
"CommandsOrderList",
"commands",
"=",
"{",
"commands",
"}",
"projectId",
"=",
"{",
"activeProject",
".",
"_id",
"}",
"/",
">",
"<",
"/DragDropContext>);",
"}",
")",
";",
"export",
"default",
"CommandOrderListContainer",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
5,
null,
null,
null,
null,
7,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
5690,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660192 | [
"import",
"{",
"Menu",
",",
"MenuDivider",
",",
"MenuItem",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"interface",
"IProjectMenuProps",
"{",
"setIsProjectDrawerOpen",
":",
"(",
"value",
":",
"React",
".",
"SetStateAction",
"<",
"boolean",
">",
")",
"=>",
"void",
";",
"setCommandsOrderModalOpen",
":",
"(",
"value",
":",
"React",
".",
"SetStateAction",
"<",
"boolean",
">",
")",
"=>",
"void",
";",
"setDeleteAlertOpen",
":",
"(",
"value",
":",
"React",
".",
"SetStateAction",
"<",
"boolean",
">",
")",
"=>",
"void",
";",
"activeProject",
":",
"IProject",
";",
"projectsRunningTaskCount",
":",
"{",
"[",
"key",
"]",
":",
"number",
";",
"}",
";",
"}",
"const",
"ProjectMenu",
"=",
"(",
"{",
"setIsProjectDrawerOpen",
",",
"setCommandsOrderModalOpen",
",",
"setDeleteAlertOpen",
",",
"activeProject",
",",
"projectsRunningTaskCount",
",",
"}",
")",
"=>",
"{",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"<",
"Menu",
"key",
"=",
"\"menu\"",
">",
"<",
"MenuDivider",
"title",
"=",
"\"Edit\"",
"/",
">",
"<",
"MenuItem",
"data",
"-",
"testid",
"=",
"\"edit-project-menu-item\"",
"icon",
"=",
"\"edit\"",
"text",
"=",
"\"Edit Project\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setIsProjectDrawerOpen",
"(",
"true",
")",
"}",
"/>",
"<",
"MenuDivider",
"title",
"=",
"\"Layout\"",
"/",
">",
"<",
"MenuItem",
"data",
"-",
"testid",
"=",
"\"change-tasks-order-menu-item\"",
"icon",
"=",
"\"sort\"",
"text",
"=",
"\"Change Tasks Order\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setCommandsOrderModalOpen",
"(",
"true",
")",
"}",
"/>",
"<",
"MenuDivider",
"title",
"=",
"\"Danger\"",
"/",
">",
"<",
"MenuItem",
"data",
"-",
"testid",
"=",
"\"delete-project-menu-item\"",
"icon",
"=",
"\"trash\"",
"text",
"=",
"\"Delete Project\"",
"intent",
"=",
"\"danger\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setDeleteAlertOpen",
"(",
"true",
")",
"}",
"title",
"=",
"{",
"projectsRunningTaskCount",
"[",
"activeProject",
".",
"_id",
"]",
">",
"0",
"?",
"\"Cannot delete project while tasks are running.\"",
":",
"undefined",
"}",
"disabled",
"=",
"{",
"projectsRunningTaskCount",
"[",
"activeProject",
".",
"_id",
"]",
">",
"0",
"}",
"/",
">",
"<",
"/Menu>",
"<",
"/React.Fragment>);",
"}",
";",
"export",
"default",
"ProjectMenu",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660193 | [
"import",
"{",
"Button",
",",
"Dialog",
",",
"HTMLSelect",
",",
"Icon",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"getYesterday",
"}",
"from",
"\"../../utils/general\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"CommandOrderListContainer",
"from",
"\"./CommandOrderListContainer\"",
";",
"interface",
"ISorterProps",
"{",
"reorderTasks",
":",
"(",
"projectId",
":",
"string",
",",
"newTasks",
":",
"IProjectCommand",
"[",
"]",
",",
"taskSortOrder",
"?",
":",
"TASK_SORT_ORDER",
")",
"=>",
"any",
";",
"activeProject",
":",
"IProject",
";",
"}",
"const",
"Sorter",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"reorderTasks",
",",
"activeProject",
"}",
")",
"=>",
"{",
"const",
"[",
"tasksOrder",
",",
"setTasksOrder",
"]",
"=",
"React",
".",
"useState",
"<",
"TASK_SORT_ORDER",
">",
"(",
"activeProject",
".",
"taskSortOrder",
"??",
"\"name-asc\"",
")",
";",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"const",
"[",
"commandsOrderModalOpen",
",",
"setCommandsOrderModalOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"sortTasksBy",
"=",
"React",
".",
"useCallback",
"(",
"(",
"order",
"=",
"\"name-asc\"",
")",
"=>",
"{",
"setTimeout",
"(",
"(",
")",
"=>",
"{",
"const",
"tasksToSort",
"=",
"[",
"...",
"activeProject",
".",
"commands",
",",
"]",
".",
"map",
"(",
"(",
"command",
")",
"=>",
"{",
"const",
"{",
"lastExecutedAt",
"}",
"=",
"command",
";",
"if",
"(",
"!",
"lastExecutedAt",
")",
"{",
"return",
"{",
"...",
"command",
",",
"lastExecutedAt",
":",
"getYesterday",
"(",
")",
",",
"}",
";",
"}",
"return",
"command",
";",
"}",
")",
";",
"if",
"(",
"order",
"===",
"\"name-asc\"",
")",
"{",
"tasksToSort",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"name",
".",
"toLowerCase",
"(",
")",
"<",
"b",
".",
"name",
".",
"toLowerCase",
"(",
")",
"?",
"-",
"1",
":",
"1",
")",
";",
"}",
"else",
"if",
"(",
"order",
"===",
"\"name-desc\"",
")",
"{",
"tasksToSort",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"a",
".",
"name",
".",
"toLowerCase",
"(",
")",
"<",
"b",
".",
"name",
".",
"toLowerCase",
"(",
")",
"?",
"1",
":",
"-",
"1",
")",
";",
"}",
"else",
"if",
"(",
"order",
"===",
"\"last-executed\"",
")",
"{",
"tasksToSort",
".",
"sort",
"(",
"(",
"a",
",",
"b",
")",
"=>",
"new",
"Date",
"(",
"a",
".",
"lastExecutedAt",
")",
".",
"getTime",
"(",
")",
"<",
"new",
"Date",
"(",
"b",
".",
"lastExecutedAt",
")",
".",
"getTime",
"(",
")",
"?",
"1",
":",
"-",
"1",
")",
";",
"}",
"reorderTasks",
"(",
"activeProject",
".",
"_id",
",",
"tasksToSort",
",",
"order",
")",
";",
"}",
",",
"0",
")",
";",
"}",
",",
"[",
"activeProject",
",",
"reorderTasks",
"]",
")",
";",
"const",
"handleChangeOrderModalClose",
"=",
"(",
")",
"=>",
"{",
"setCommandsOrderModalOpen",
"(",
"false",
")",
";",
"}",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"if",
"(",
"tasksOrder",
"===",
"\"custom\"",
")",
"{",
"return",
";",
"}",
"sortTasksBy",
"(",
"tasksOrder",
")",
";",
"}",
",",
"[",
"tasksOrder",
"]",
")",
";",
"React",
".",
"useEffect",
"(",
"(",
")",
"=>",
"{",
"console",
".",
"log",
"(",
"\"Active Project Changed...\"",
")",
";",
"console",
".",
"log",
"(",
"\"activeProject, tasksOrder:\"",
",",
"activeProject",
",",
"tasksOrder",
")",
";",
"if",
"(",
"activeProject",
".",
"taskSortOrder",
"!==",
"tasksOrder",
")",
"{",
"if",
"(",
"!",
"activeProject",
".",
"taskSortOrder",
")",
"{",
"setTasksOrder",
"(",
"\"name-asc\"",
")",
";",
"}",
"else",
"{",
"setTasksOrder",
"(",
"activeProject",
".",
"taskSortOrder",
")",
";",
"}",
"}",
"}",
",",
"[",
"activeProject",
"]",
")",
";",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"Sort",
"tasks",
"by",
":",
"<",
"span",
"style",
"=",
"{",
"{",
"paddingRight",
":",
"10",
"}",
"}",
">",
"<",
"/span>",
"<",
"HTMLSelect",
"value",
"=",
"{",
"tasksOrder",
"}",
"onChange",
"=",
"{",
"(",
"e",
")",
"=>",
"{",
"const",
"order",
"=",
"e",
".",
"target",
".",
"value",
"as",
"TASK_SORT_ORDER",
";",
"setTasksOrder",
"(",
"order",
")",
";",
"if",
"(",
"order",
"===",
"\"custom\"",
")",
"{",
"setCommandsOrderModalOpen",
"(",
"true",
")",
";",
"}",
"}",
"}",
"options",
"=",
"{",
"[",
"{",
"label",
":",
"\"Name (A-Z)\"",
",",
"value",
":",
"\"name-asc\"",
"}",
",",
"{",
"label",
":",
"\"Name (Z-A)\"",
",",
"value",
":",
"\"name-desc\"",
"}",
",",
"{",
"label",
":",
"\"Last Executed\"",
",",
"value",
":",
"\"last-executed\"",
"}",
",",
"{",
"label",
":",
"\"Custom\"",
",",
"value",
":",
"\"custom\"",
"}",
",",
"]",
"}",
"/",
">",
"<",
"Button",
"icon",
"=",
"{",
"<",
"Icon",
"icon",
"=",
"\"refresh\"",
"iconSize",
"=",
"{",
"12",
"}",
"/",
">",
"}",
"intent",
"=",
"\"none\"",
"minimal",
"data",
"-",
"testid",
"=",
"\"refresh-task-sort-order\"",
"small",
"style",
"=",
"{",
"{",
"padding",
":",
"5",
",",
"marginLeft",
":",
"2",
"}",
"}",
"title",
"=",
"\"Click to refresh task sort order.\"",
"onClick",
"=",
"{",
"(",
")",
"=>",
"{",
"sortTasksBy",
"(",
"tasksOrder",
")",
";",
"if",
"(",
"tasksOrder",
"===",
"\"custom\"",
")",
"{",
"setCommandsOrderModalOpen",
"(",
"true",
")",
";",
"}",
"}",
"}",
"/>",
"<",
"Dialog",
"title",
"=",
"\"Drag to set custom task order\"",
"icon",
"=",
"{",
"\"numbered-list\"",
"}",
"className",
"=",
"{",
"theme",
"}",
"isOpen",
"=",
"{",
"commandsOrderModalOpen",
"}",
"onClose",
"=",
"{",
"handleChangeOrderModalClose",
"}",
">",
"<",
"CommandOrderListContainer",
"activeProject",
"=",
"{",
"activeProject",
"}",
"/>",
"<",
"/Dialog>",
"<",
"/React.Fragment>);",
"}",
")",
";",
"export",
"default",
"Sorter",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
64,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660194 | [
"import",
"{",
"Alert",
",",
"Alignment",
",",
"Button",
",",
"Dialog",
",",
"Icon",
",",
"Navbar",
",",
"Popover",
",",
"Tooltip",
",",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"useQuery",
"}",
"from",
"\"react-query\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"{",
"isRunningInElectron",
",",
"openInExplorer",
"}",
"from",
"\"../../utils/electron\"",
";",
"import",
"NewCommandDrawer",
"from",
"\"../NewCommandDrawer\"",
";",
"import",
"EditProjectDrawer",
"from",
"\"../ProjectForm/EditProjectDrawer\"",
";",
"import",
"{",
"getGitRepo",
"}",
"from",
"\"../shared/API\"",
";",
"import",
"{",
"configAtom",
"}",
"from",
"\"../shared/state/atoms\"",
";",
"import",
"{",
"useProjects",
"}",
"from",
"\"../shared/stores/ProjectStore\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"import",
"CommandOrderListContainer",
"from",
"\"./CommandOrderListContainer\"",
";",
"import",
"ProjectMenu",
"from",
"\"./ProjectMenu\"",
";",
"import",
"Sorter",
"from",
"\"./Sorter\"",
";",
"interface",
"IProjectTopbarProps",
"{",
"activeProject",
":",
"IProject",
";",
"}",
"const",
"GitBranchContainer",
"=",
"styled",
".",
"div",
"`\n display: flex;\n align-items: center;\n & > .git-branch-name {\n padding-left: 5px;\n padding-right: 5px;\n }\n`",
";",
"const",
"ProjectTopbar",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"activeProject",
"}",
")",
"=>",
"{",
"const",
"[",
"isDeleteAlertOpen",
",",
"setDeleteAlertOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"[",
"commandsOrderModalOpen",
",",
"setCommandsOrderModalOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"const",
"[",
"isDrawerOpen",
",",
"setDrawerOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"[",
"isProjectDrawerOpen",
",",
"setIsProjectDrawerOpen",
"]",
"=",
"React",
".",
"useState",
"<",
"boolean",
">",
"(",
"false",
")",
";",
"const",
"config",
"=",
"useRecoilValue",
"(",
"configAtom",
")",
";",
"const",
"gitInfo",
"=",
"useQuery",
"(",
"[",
"\"gitBranch\"",
",",
"config",
",",
"activeProject",
"]",
",",
"(",
")",
"=>",
"getGitRepo",
"(",
"config",
",",
"activeProject",
".",
"path",
")",
")",
";",
"const",
"{",
"deleteProject",
",",
"projectsRunningTaskCount",
",",
"runAllStoppedTasks",
",",
"stopAllRunningTasks",
",",
"reorderTasks",
",",
"}",
"=",
"useProjects",
"(",
")",
";",
"const",
"shouldDeleteProject",
"=",
"async",
"(",
"shouldDelete",
")",
"=>",
"{",
"try",
"{",
"if",
"(",
"shouldDelete",
")",
"{",
"deleteProject",
"(",
"activeProject",
".",
"_id",
")",
";",
"setDeleteAlertOpen",
"(",
"false",
")",
";",
"}",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"error",
"(",
"`Error deleting project: `",
",",
"error",
")",
";",
"}",
"}",
";",
"const",
"handleChangeOrderModalClose",
"=",
"(",
")",
"=>",
"{",
"setCommandsOrderModalOpen",
"(",
"false",
")",
";",
"}",
";",
"return",
"(",
"<",
"React",
".",
"Fragment",
">",
"<",
"Navbar",
">",
"<",
"Navbar",
".",
"Group",
">",
"<",
"Navbar",
".",
"Heading",
"data",
"-",
"testid",
"=",
"\"active-project-name\"",
">",
"{",
"activeProject",
".",
"name",
"}",
"<",
"/Navbar.Heading>",
"{",
"isRunningInElectron",
"(",
")",
"?",
"(",
"<",
"Tooltip",
"content",
"=",
"\"Open project in file explorer\"",
">",
"<",
"Button",
"data",
"-",
"testid",
"=",
"\"open-project-directory-button\"",
"icon",
"=",
"\"folder-shared-open\"",
"minimal",
"=",
"{",
"true",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"openInExplorer",
"(",
"activeProject",
".",
"path",
")",
"}",
"/>",
"<",
"/Tooltip>) : null}",
"<",
"Navbar",
".",
"Heading",
"data",
"-",
"testid",
"=",
"\"active-project-git-branch\"",
">",
"{",
"gitInfo",
"?.",
"isLoading",
"?",
"(",
"\"loading...\"",
")",
":",
"gitInfo",
"?.",
"data",
"?.",
"branch",
"?",
"(",
"<",
"GitBranchContainer",
">",
"<",
"Navbar",
".",
"Divider",
"style",
"=",
"{",
"{",
"paddingRight",
":",
"10",
"}",
"}",
"/>{\" \"}",
"<",
"Icon",
"icon",
"=",
"\"git-branch\"",
"/",
">",
"{",
"<",
"span",
"className",
"=",
"\"git-branch-name\"",
">",
"{",
"gitInfo",
"?.",
"data",
"?.",
"branch",
"}",
"<",
"/span>}",
"<",
"/GitBranchContainer>) : null}",
"<",
"/Navbar.Heading>",
"<",
"/Navbar.Group>",
"<",
"Navbar",
".",
"Group",
">",
"<",
"Navbar",
".",
"Divider",
"style",
"=",
"{",
"{",
"paddingRight",
":",
"10",
"}",
"}",
"/>{\" \"}",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"runAllStoppedTasks",
"(",
")",
"}",
"icon",
"=",
"\"play\"",
"intent",
"=",
"\"success\"",
"text",
"=",
"\"Run All\"",
"minimal",
"=",
"{",
"true",
"}",
"data",
"-",
"testid",
"=",
"\"run-all-stopped-tasks\"",
"title",
"=",
"{",
"projectsRunningTaskCount",
"[",
"activeProject",
".",
"_id",
"]",
"===",
"activeProject",
".",
"commands",
".",
"length",
"?",
"\"All the tasks in the project are already running.\"",
":",
"\"Runs all stopped tasks in this project.\"",
"}",
"disabled",
"=",
"{",
"projectsRunningTaskCount",
"[",
"activeProject",
".",
"_id",
"]",
"===",
"activeProject",
".",
"commands",
".",
"length",
"}",
"/",
">",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"stopAllRunningTasks",
"(",
")",
"}",
"icon",
"=",
"\"stop\"",
"intent",
"=",
"\"danger\"",
"text",
"=",
"\"Stop All\"",
"minimal",
"=",
"{",
"true",
"}",
"data",
"-",
"testid",
"=",
"\"stop-all-running-tasks\"",
"title",
"=",
"{",
"projectsRunningTaskCount",
"[",
"activeProject",
".",
"_id",
"]",
"===",
"0",
"?",
"\"No tasks are running in the project.\"",
":",
"\"Stops all running tasks in this project.\"",
"}",
"disabled",
"=",
"{",
"projectsRunningTaskCount",
"[",
"activeProject",
".",
"_id",
"]",
"===",
"0",
"}",
"/",
">",
"<",
"/Navbar.Group>",
"<",
"Navbar",
".",
"Group",
"align",
"=",
"{",
"Alignment",
".",
"LEFT",
"}",
">",
"<",
"Navbar",
".",
"Divider",
"style",
"=",
"{",
"{",
"paddingRight",
":",
"10",
"}",
"}",
"/>",
"<",
"Sorter",
"activeProject",
"=",
"{",
"activeProject",
"}",
"reorderTasks",
"=",
"{",
"reorderTasks",
"}",
"/",
">",
"<",
"/Navbar.Group>",
"<",
"Navbar",
".",
"Group",
"align",
"=",
"{",
"Alignment",
".",
"RIGHT",
"}",
">",
"<",
"Button",
"onClick",
"=",
"{",
"(",
")",
"=>",
"setDrawerOpen",
"(",
"true",
")",
"}",
"icon",
"=",
"\"add\"",
"intent",
"=",
"\"success\"",
"text",
"=",
"\"New Task\"",
"minimal",
"=",
"{",
"true",
"}",
"data",
"-",
"testid",
"=",
"\"new-task-button\"",
"/",
">",
"<",
"Navbar",
".",
"Divider",
"/>",
"<",
"Popover",
"position",
"=",
"\"left-top\"",
">",
"<",
"Button",
"icon",
"=",
"\"cog\"",
"minimal",
"=",
"{",
"true",
"}",
"data",
"-",
"testid",
"=",
"\"project-settings-button\"",
"/",
">",
"<",
"ProjectMenu",
"setIsProjectDrawerOpen",
"=",
"{",
"setIsProjectDrawerOpen",
"}",
"setCommandsOrderModalOpen",
"=",
"{",
"setCommandsOrderModalOpen",
"}",
"setDeleteAlertOpen",
"=",
"{",
"setDeleteAlertOpen",
"}",
"activeProject",
"=",
"{",
"activeProject",
"}",
"projectsRunningTaskCount",
"=",
"{",
"projectsRunningTaskCount",
"}",
"/",
">",
"<",
"/Popover>",
"<",
"/Navbar.Group>",
"<",
"/Navbar>",
"<",
"Dialog",
"title",
"=",
"\"Change Tasks Order\"",
"icon",
"=",
"{",
"\"numbered-list\"",
"}",
"className",
"=",
"{",
"theme",
"}",
"isOpen",
"=",
"{",
"commandsOrderModalOpen",
"}",
"onClose",
"=",
"{",
"handleChangeOrderModalClose",
"}",
">",
"<",
"CommandOrderListContainer",
"activeProject",
"=",
"{",
"activeProject",
"}",
"/>",
"<",
"/Dialog>",
"<",
"Alert",
"cancelButtonText",
"=",
"\"Cancel\"",
"confirmButtonText",
"=",
"\"Yes, Delete\"",
"className",
"=",
"{",
"theme",
"}",
"icon",
"=",
"\"trash\"",
"intent",
"=",
"\"danger\"",
"isOpen",
"=",
"{",
"isDeleteAlertOpen",
"}",
"onCancel",
"=",
"{",
"(",
")",
"=>",
"setDeleteAlertOpen",
"(",
"false",
")",
"}",
"onConfirm",
"=",
"{",
"(",
")",
"=>",
"shouldDeleteProject",
"(",
"true",
")",
"}",
">",
"<",
"p",
"data",
"-",
"testid",
"=",
"\"delete-project-warning\"",
">",
"Are",
"you",
"sure",
"you",
"want",
"to",
"delete",
"project",
"<",
"b",
">",
"{",
"activeProject",
".",
"name",
"}",
"<",
"/b>?",
"<",
"/p>",
"<",
"/Alert>",
"<",
"NewCommandDrawer",
"isDrawerOpen",
"=",
"{",
"isDrawerOpen",
"}",
"setDrawerOpen",
"=",
"{",
"setDrawerOpen",
"}",
"/",
">",
"<",
"EditProjectDrawer",
"activeProject",
"=",
"{",
"activeProject",
"}",
"isDrawerOpen",
"=",
"{",
"isProjectDrawerOpen",
"}",
"setDrawerOpen",
"=",
"{",
"setIsProjectDrawerOpen",
"}",
"/",
">",
"<",
"/React.Fragment>);",
"}",
")",
";",
"export",
"default",
"ProjectTopbar",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
866,
null,
null,
null,
null,
null,
null,
null,
2048,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660195 | [
"import",
"{",
"Classes",
",",
"Colors",
",",
"Spinner",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"{",
"useRecoilValue",
"}",
"from",
"\"recoil\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"CommandsArea",
"from",
"\"../CommandsArea\"",
";",
"import",
"ProjectTopbar",
"from",
"\"../ProjectTopbar\"",
";",
"import",
"{",
"activeProjectAtom",
"}",
"from",
"\"../shared/state/atoms\"",
";",
"import",
"{",
"useProjects",
"}",
"from",
"\"../shared/stores/ProjectStore\"",
";",
"import",
"{",
"useTheme",
"}",
"from",
"\"../shared/stores/ThemeStore\"",
";",
"const",
"Container",
"=",
"styled",
".",
"div",
"`\n border-top: 1px solid transparent; /* To prevent margin-collapse for first child doesn't happen */\n background: ${",
"(",
"props",
")",
"=>",
"props",
".",
"theme",
"===",
"Classes",
".",
"DARK",
"?",
"Colors",
".",
"DARK_GRAY1",
":",
"Colors",
".",
"LIGHT_GRAY1",
"};\n height: 100%;\n max-width: 100%;\n display: flex;\n flex-direction: column;\n`",
";",
"const",
"EmptyContainer",
"=",
"styled",
".",
"div",
"`\n border-top: 1px solid transparent; /* To prevent margin-collapse for first child doesn't happen */\n background: ${",
"(",
"props",
")",
"=>",
"props",
".",
"theme",
"===",
"Classes",
".",
"DARK",
"?",
"Colors",
".",
"DARK_GRAY1",
":",
"Colors",
".",
"LIGHT_GRAY1",
"};\n height: 100%;\n max-width: 100%;\n display: flex;\n flex-direction: column;\n display: flex;\n justify-content: center;\n align-items: center;\n font-size: 2em;\n & > span {\n padding: 10px;\n border-bottom: 1px solid #0a6640;\n }\n`",
";",
"const",
"Main",
"=",
"React",
".",
"memo",
"(",
"(",
")",
"=>",
"{",
"const",
"{",
"theme",
"}",
"=",
"useTheme",
"(",
")",
";",
"const",
"{",
"loadingProjects",
",",
"projects",
"}",
"=",
"useProjects",
"(",
")",
";",
"const",
"activeProject",
"=",
"useRecoilValue",
"(",
"activeProjectAtom",
")",
";",
"if",
"(",
"loadingProjects",
")",
"{",
"return",
"(",
"<",
"EmptyContainer",
"theme",
"=",
"{",
"theme",
"}",
"className",
"=",
"\"main-container\"",
">",
"<",
"Spinner",
"/>",
"<",
"/EmptyContainer>);",
"}",
"if",
"(",
"!",
"projects",
"||",
"projects",
".",
"length",
"===",
"0",
")",
"{",
"return",
"(",
"<",
"EmptyContainer",
"theme",
"=",
"{",
"theme",
"}",
"className",
"=",
"\"main-container\"",
"data",
"-",
"testid",
"=",
"\"no-projects-message\"",
">",
"Add",
"a",
"project",
"using",
"<",
"span",
">",
"New",
"Project",
"<",
"/span> button",
"<",
"/EmptyContainer>);",
"}",
"return",
"(",
"<",
"Container",
"theme",
"=",
"{",
"theme",
"}",
"className",
"=",
"\"main-container\"",
">",
"<",
"div",
">",
"<",
"ProjectTopbar",
"activeProject",
"=",
"{",
"activeProject",
"}",
"/>",
"<",
"/div>",
"<",
"CommandsArea",
"activeProject",
"=",
"{",
"activeProject",
"}",
"/",
">",
"<",
"/Container>);",
"}",
")",
";",
"export",
"default",
"Main",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
62,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
62,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
534,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660196 | [
"import",
"{",
"atom",
"}",
"from",
"\"recoil\"",
";",
"import",
"{",
"getItem",
",",
"setItem",
"}",
"from",
"\"../../../utils/storage\"",
";",
"let",
"defaultSiderWidth",
"=",
"Number",
"(",
"getItem",
"(",
"\"sider-width\"",
")",
")",
";",
"if",
"(",
"!",
"defaultSiderWidth",
"||",
"defaultSiderWidth",
"===",
"0",
"||",
"Number",
".",
"isNaN",
"(",
"defaultSiderWidth",
")",
")",
"{",
"setItem",
"(",
"\"sider-width\"",
",",
"300",
")",
";",
"defaultSiderWidth",
"=",
"300",
";",
"}",
"export",
"const",
"siderWidthAtom",
"=",
"atom",
"<",
"number",
">",
"(",
"{",
"key",
":",
"\"siderWidth\"",
",",
"default",
":",
"defaultSiderWidth",
"??",
"300",
",",
"}",
")",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
3,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1664,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660197 | [
"import",
"{",
"v4",
"as",
"uuidv4",
"}",
"from",
"\"uuid\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../utils/electron\"",
";",
"import",
"{",
"getYesterday",
"}",
"from",
"\"../../utils/general\"",
";",
"const",
"nodeConfigFileParser",
"=",
"(",
"file",
")",
":",
"IProject",
"|",
"null",
"=>",
"{",
"const",
"project",
"=",
"{",
"_id",
":",
"uuidv4",
"(",
")",
",",
"name",
":",
"\"\"",
",",
"type",
":",
"\"\"",
",",
"commands",
":",
"[",
"]",
",",
"path",
":",
"\"\"",
",",
"configFile",
":",
"\"\"",
",",
"}",
";",
"try",
"{",
"if",
"(",
"!",
"file",
".",
"data",
")",
"{",
"return",
"null",
";",
"}",
"let",
"shouldRunWithYarn",
"=",
"false",
";",
"project",
".",
"configFile",
"=",
"file",
".",
"name",
";",
"if",
"(",
"!",
"project",
".",
"configFile",
".",
"endsWith",
"(",
"\".json\"",
")",
")",
"{",
"return",
"null",
";",
"}",
"const",
"packageJsonData",
"=",
"JSON",
".",
"parse",
"(",
"file",
".",
"data",
".",
"toString",
"(",
")",
")",
";",
"if",
"(",
"file",
".",
"path",
")",
"{",
"project",
".",
"path",
"=",
"file",
".",
"path",
";",
"}",
"else",
"if",
"(",
"packageJsonData",
".",
"tenHands",
")",
"{",
"const",
"userConfig",
"=",
"packageJsonData",
".",
"tenHands",
";",
"project",
".",
"path",
"=",
"userConfig",
".",
"path",
"?",
"userConfig",
".",
"path",
":",
"\"\"",
";",
"}",
"else",
"{",
"project",
".",
"path",
"=",
"\"\"",
";",
"}",
"if",
"(",
"isRunningInElectron",
"(",
")",
")",
"{",
"try",
"{",
"const",
"fs",
"=",
"require",
"(",
"\"fs\"",
")",
";",
"const",
"path",
"=",
"require",
"(",
"\"path\"",
")",
";",
"if",
"(",
"fs",
".",
"existsSync",
"(",
"path",
".",
"join",
"(",
"file",
".",
"path",
",",
"\"yarn.lock\"",
")",
")",
")",
"{",
"console",
".",
"log",
"(",
"\"yarn.lock exists at file path. Using yarn to run scripts.\"",
")",
";",
"shouldRunWithYarn",
"=",
"true",
";",
"}",
"else",
"{",
"console",
".",
"log",
"(",
"\"yarn.lock doesn't exist at file path. Using npm to run scripts.\"",
")",
";",
"shouldRunWithYarn",
"=",
"false",
";",
"}",
"}",
"catch",
"(",
"err",
")",
"{",
"console",
".",
"error",
"(",
"err",
")",
";",
"shouldRunWithYarn",
"=",
"false",
";",
"}",
"}",
"project",
".",
"name",
"=",
"packageJsonData",
".",
"name",
";",
"project",
".",
"type",
"=",
"\"nodejs\"",
";",
"const",
"scriptsInPackageJson",
"=",
"packageJsonData",
".",
"scripts",
";",
"if",
"(",
"scriptsInPackageJson",
"&&",
"typeof",
"scriptsInPackageJson",
"===",
"\"object\"",
")",
"{",
"project",
".",
"commands",
"=",
"Object",
".",
"keys",
"(",
"scriptsInPackageJson",
")",
".",
"map",
"(",
"(",
"name",
")",
"=>",
"{",
"return",
"{",
"_id",
":",
"uuidv4",
"(",
")",
",",
"name",
",",
"cmd",
":",
"shouldRunWithYarn",
"?",
"`yarn ${",
"name",
"}`",
":",
"`npm run ${",
"name",
"}`",
",",
"execDir",
":",
"\"\"",
",",
"lastExecutedAt",
":",
"getYesterday",
"(",
")",
",",
"}",
";",
"}",
")",
";",
"}",
"else",
"{",
"project",
".",
"commands",
"=",
"[",
"]",
";",
"}",
"return",
"project",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"nodeConfigFileParser error:\"",
",",
"error",
")",
";",
"return",
"null",
";",
"}",
"}",
";",
"const",
"projectParsers",
"=",
"[",
"nodeConfigFileParser",
"]",
";",
"const",
"getProjectData",
"=",
"(",
"file",
")",
":",
"IProject",
"|",
"null",
"=>",
"{",
"for",
"(",
"const",
"parser",
"of",
"projectParsers",
")",
"{",
"const",
"parsedData",
"=",
"parser",
"(",
"file",
")",
";",
"if",
"(",
"parsedData",
"===",
"null",
")",
"{",
"continue",
";",
"}",
"return",
"parsedData",
";",
"}",
"return",
"null",
";",
"}",
";",
"const",
"extractProjectDataFromConfigFile",
"=",
"(",
"file",
")",
":",
"IProject",
"|",
"null",
"=>",
"{",
"if",
"(",
"file",
".",
"data",
"!==",
"null",
")",
"{",
"const",
"project",
"=",
"getProjectData",
"(",
"file",
")",
";",
"return",
"project",
";",
"}",
"return",
"null",
";",
"}",
";",
"export",
"default",
"extractProjectDataFromConfigFile",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
8,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
2,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
0,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1128,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660198 | [
"import",
"{",
"Button",
",",
"Classes",
",",
"HTMLTable",
",",
"Icon",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"interface",
"INewProjectCommandsProps",
"{",
"commands",
":",
"IProjectCommand",
"[",
"]",
";",
"setCommands",
":",
"(",
"commands",
":",
"IProjectCommand",
"[",
"]",
")",
"=>",
"any",
";",
"}",
"const",
"NewProjectCommands",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"commands",
",",
"setCommands",
"}",
")",
"=>",
"{",
"if",
"(",
"commands",
".",
"length",
"===",
"0",
")",
"{",
"return",
"<",
"div",
"/>;",
"}",
"const",
"removeCommand",
"=",
"(",
"cmd",
")",
"=>",
"{",
"const",
"_commands",
"=",
"[",
"...",
"commands",
"]",
";",
"const",
"updatedCommands",
"=",
"_commands",
".",
"filter",
"(",
"(",
"command",
")",
"=>",
"command",
".",
"_id",
"!==",
"cmd",
".",
"_id",
")",
";",
"setCommands",
"(",
"updatedCommands",
")",
";",
"}",
";",
"return",
"(",
"<",
"div",
">",
"<",
"HTMLTable",
"className",
"=",
"{",
"Classes",
".",
"HTML_TABLE",
"}",
">",
"<",
"thead",
">",
"<",
"tr",
">",
"<",
"th",
">",
"Name",
"<",
"/th>",
"<",
"th",
">",
"Command",
"<",
"/th>",
"<",
"th",
"/",
">",
"<",
"/tr>",
"<",
"/thead>",
"<",
"tbody",
">",
"{",
"commands",
".",
"map",
"(",
"(",
"command",
")",
"=>",
"{",
"return",
"(",
"<",
"tr",
"key",
"=",
"{",
"command",
".",
"_id",
"}",
"data",
"-",
"testid",
"=",
"\"new-project-task-row\"",
">",
"<",
"td",
">",
"{",
"command",
".",
"name",
"}",
"<",
"/td>",
"<",
"td",
">",
"{",
"command",
".",
"cmd",
"}",
"<",
"/td>",
"<",
"td",
">",
"<",
"Button",
"intent",
"=",
"{",
"\"danger\"",
"}",
"minimal",
"=",
"{",
"true",
"}",
"onClick",
"=",
"{",
"(",
")",
"=>",
"removeCommand",
"(",
"command",
")",
"}",
">",
"<",
"Icon",
"icon",
"=",
"\"cross\"",
"/",
">",
"<",
"/Button>",
"<",
"/td>",
"<",
"/tr>);",
"}",
")",
"}",
"<",
"/tbody>",
"<",
"/HTMLTable>",
"<",
"/div>);",
"}",
")",
";",
"export",
"default",
"NewProjectCommands",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
4,
null,
null,
10065,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
null,
5,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
10065,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
660199 | [
"import",
"{",
"Button",
"}",
"from",
"\"@blueprintjs/core\"",
";",
"import",
"{",
"captureException",
"}",
"from",
"\"@sentry/react\"",
";",
"import",
"React",
"from",
"\"react\"",
";",
"import",
"styled",
"from",
"\"styled-components\"",
";",
"import",
"{",
"isRunningInElectron",
"}",
"from",
"\"../../utils/electron\"",
";",
"const",
"ProjectFileFieldContainer",
"=",
"styled",
".",
"div",
"`\n display: flex;\n flex-direction: column;\n justify-content: center;\n align-items: center;\n`",
";",
"interface",
"IProjectFileUploadProps",
"{",
"configFileName",
"?",
":",
"string",
";",
"onConfigFileUpload",
":",
"(",
"fileName",
":",
"string",
",",
"data",
":",
"any",
")",
"=>",
"void",
";",
"}",
"const",
"ProjectFileUpload",
"=",
"React",
".",
"memo",
"(",
"(",
"{",
"configFileName",
",",
"onConfigFileUpload",
"}",
")",
"=>",
"{",
"const",
"openUploadDialog",
"=",
"async",
"(",
")",
"=>",
"{",
"if",
"(",
"isRunningInElectron",
"(",
")",
")",
"{",
"try",
"{",
"const",
"{",
"fileData",
",",
"filePath",
"}",
"=",
"await",
"window",
".",
"desktop",
".",
"uploadAndReadPackageJSON",
"(",
")",
";",
"onConfigFileUpload",
"(",
"filePath",
",",
"fileData",
")",
";",
"}",
"catch",
"(",
"error",
")",
"{",
"console",
".",
"log",
"(",
"\"error:\"",
",",
"error",
")",
";",
"captureException",
"(",
"error",
")",
";",
"return",
"null",
";",
"}",
"}",
"}",
";",
"return",
"(",
"<",
"ProjectFileFieldContainer",
">",
"{",
"configFileName",
"?",
"<",
"p",
">",
"{",
"configFileName",
"}",
"<",
"/p> : null}",
"<",
"Button",
"text",
"=",
"\"Upload project file\"",
"icon",
"=",
"\"upload\"",
"intent",
"=",
"\"primary\"",
"onClick",
"=",
"{",
"openUploadDialog",
"}",
"/",
">",
"<",
"/ProjectFileFieldContainer>);",
"}",
")",
";",
"export",
"default",
"ProjectFileUpload",
";"
] | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
14,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
28,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
7,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null
] |
Subsets and Splits