ast
stringlengths 16
28.2M
|
---|
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){utils.hwe}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){prob}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){funname}<LEND>[call](){}<LSEP>[](symbol){[[}<LEND>[argument 0; call](){}<LSEP>[](symbol){match.call}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){build}<LSEP>[litteral](str){Jacob}<LEND>[statement 2; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LSEP>[](symbol){verbose}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.null}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){x}<LSEP>[](symbol){other}<LEND>[](symbol){verbose}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){verbose}<LEND>[call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){x}<LSEP>[](symbol){other}<LEND>[](symbol){verbose}<LEND>[false branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){verbose}<LSEP>[litteral](real){2.000000}<LEND>[statement 3; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){|}<LEND>[argument 0; call](){}<LSEP>[](symbol){<}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){>}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){5.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LEND>[argument 0; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){ Warning: Parameter 'verbose'...}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){verbose}<LSEP>[litteral](real){2.000000}<LEND>[statement 4; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){5.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){Starting}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){[ Build =}<LSEP>[](symbol){build}<LSEP>[argument 4; litteral](str){]\n}<LEND>[false branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){Starting}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){\n}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!=}<LEND>[argument 0; call](){}<LSEP>[](symbol){class}<LSEP>[](symbol){x}<LEND>[argument 1; litteral](str){genlight}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){Fatal Error: genlight object r...}<LEND>[statement 6; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){all}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){x}<LSEP>[](symbol){ploidy}<LEND>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){ Detected Presence/Absence (S...}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){ applies only to SNP data!\n}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){all}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){x}<LSEP>[](symbol){ploidy}<LEND>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Processing a SNP dataset\n}<LEND>[false branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){Fatal Error: Ploidy must be un...}<LEND>[statement 7; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){x}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics.flags}<LEND>[](symbol){monomorphs}<LEND>[argument 1; litteral](logical){FALSE}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Warning: Dataset contains mo...}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){ calculations\n}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){m}<LEND>[call](){}<LSEP>[](symbol){as.matrix}<LSEP>[](symbol){x}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){hom.ref}<LEND>[call](){}<LSEP>[](symbol){array}<LSEP>[argument 0; litteral](logical){NA}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){m}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){hom.snp}<LSEP>[](symbol){hom.ref}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){het}<LSEP>[](symbol){hom.ref}<LEND>[statement 12; assign](){<-}<LSEP>[](symbol){total}<LSEP>[](symbol){hom.ref}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){p.values}<LSEP>[](symbol){hom.ref}<LEND>[statement 14; assign](){<-}<LSEP>[](symbol){boncrit}<LSEP>[](symbol){hom.ref}<LEND>[statement 15; assign](){<-}<LSEP>[](symbol){sig}<LSEP>[](symbol){hom.ref}<LEND>[statement 16; assign](){<-}<LSEP>[](symbol){sig2}<LSEP>[](symbol){hom.ref}<LEND>[statement 17; assign](){<-}<LSEP>[](symbol){bonsig}<LSEP>[](symbol){hom.ref}<LEND>[statement 18; assign](){<-}<LSEP>[](symbol){bonsig2}<LSEP>[](symbol){hom.ref}<LEND>[statement 19; assign](){<-}<LSEP>[](symbol){columns}<LEND>[call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){m}<LEND>[statement 20; control flow](){for}<LSEP>[](symbol){i}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){hom.ref}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){which}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m}<LSEP>[](symbol){}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.000000}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){hom.snp}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){which}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m}<LSEP>[](symbol){}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){2.000000}<LEND>[statement 2; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){het}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){which}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m}<LSEP>[](symbol){}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 3; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){utils.prob.hwe}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){het}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){hom.ref}<LSEP>[](symbol){i}<LEND>[argument 2; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){hom.snp}<LSEP>[](symbol){i}<LEND>[statement 4; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){<}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sig2}<LSEP>[](symbol){i}<LEND>[litteral](logical){NA}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.050000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sig2}<LSEP>[](symbol){i}<LEND>[litteral](str){ns}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){&&}<LEND>[argument 0; call](){}<LSEP>[](symbol){<=}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.050000}<LEND>[argument 1; call](){}<LSEP>[](symbol){>}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.010000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sig2}<LSEP>[](symbol){i}<LEND>[litteral](str){*}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){&&}<LEND>[argument 0; call](){}<LSEP>[](symbol){<=}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.010000}<LEND>[argument 1; call](){}<LSEP>[](symbol){>}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.001000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sig2}<LSEP>[](symbol){i}<LEND>[litteral](str){**}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){<=}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.001000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sig2}<LSEP>[](symbol){i}<LEND>[litteral](str){***}<LEND>[statement 5; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){total}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){+}<LEND>[argument 0; call](){}<LSEP>[](symbol){+}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){hom.ref}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){het}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){hom.snp}<LSEP>[](symbol){i}<LEND>[statement 6; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){boncrit}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){/}<LSEP>[](symbol){prob}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){total}<LSEP>[](symbol){i}<LEND>[statement 7; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){bonsig}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){(}<LEND>[argument 0; call](){}<LSEP>[](symbol){&&}<LEND>[argument 0; call](){}<LSEP>[](symbol){(}<LEND>[argument 0; call](){}<LSEP>[](symbol){>=}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](real){0.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){(}<LEND>[argument 0; call](){}<LSEP>[](symbol){<}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){p.values}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){boncrit}<LSEP>[](symbol){i}<LEND>[statement 8; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){bonsig}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](logical){FALSE}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){bonsig2}<LSEP>[](symbol){i}<LEND>[litteral](str){ns}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){bonsig}<LSEP>[](symbol){i}<LEND>[argument 1; litteral](logical){TRUE}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){bonsig2}<LSEP>[](symbol){i}<LEND>[litteral](str){*}<LEND>[statement 21; assign](){<-}<LSEP>[](symbol){result}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LEND>[argument 0; call](){}<LSEP>[](symbol){cbind}<LSEP>[](symbol){hom.ref}<LSEP>[](symbol){het}<LSEP>[](symbol){hom.snp}<LSEP>[](symbol){total}<LSEP>[](symbol){p.values}<LSEP>[](symbol){sig2}<LSEP>[](symbol){bonsig2}<LEND>[statement 22; assign](){<-}<LSEP>[](symbol){result}<LEND>[call](){}<LSEP>[](symbol){cbind}<LSEP>[](symbol){columns}<LSEP>[](symbol){result}<LEND>[statement 23; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){names}<LSEP>[](symbol){result}<LEND>[call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](str){Locus}<LSEP>[argument 1; litteral](str){Hom_1}<LSEP>[argument 2; litteral](str){Het}<LSEP>[argument 3; litteral](str){Hom_2}<LSEP>[argument 4; litteral](str){N}<LSEP>[argument 5; litteral](str){Prob}<LSEP>[argument 6; litteral](str){Sig}<LSEP>[argument 7; litteral](str){BonSig}<LEND>[statement 24; assign](){<-}<LSEP>[](symbol){pc}<LEND>[call](){}<LSEP>[](symbol){/}<LEND>[argument 0; call](){}<LSEP>[](symbol){*}<LEND>[argument 0; call](){}<LSEP>[](symbol){sum}<LSEP>[](symbol){sig}<LSEP>[argument 1; litteral](logical){TRUE}<LEND>[argument 1; litteral](real){100.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){length}<LSEP>[](symbol){sig}<LEND>[statement 25; assign](){<-}<LSEP>[](symbol){pc}<LEND>[call](){}<LSEP>[](symbol){round}<LSEP>[](symbol){pc}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[statement 26; assign](){<-}<LSEP>[](symbol){pc2}<LEND>[call](){}<LSEP>[](symbol){/}<LEND>[argument 0; call](){}<LSEP>[](symbol){*}<LEND>[argument 0; call](){}<LSEP>[](symbol){sum}<LSEP>[](symbol){bonsig}<LSEP>[argument 1; litteral](logical){TRUE}<LEND>[argument 1; litteral](real){100.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){length}<LSEP>[](symbol){bonsig}<LEND>[statement 27; assign](){<-}<LSEP>[](symbol){pc2}<LEND>[call](){}<LSEP>[](symbol){round}<LSEP>[](symbol){pc2}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[statement 28; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){Completed:}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){\n}<LEND>[statement 29; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){result} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){cramer.data.frame}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){check}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.data.frame}<LSEP>[](symbol){x}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LEND>[argument 0; call](){}<LSEP>[](symbol){deparse}<LEND>[argument 0; call](){}<LSEP>[](symbol){substitute}<LSEP>[](symbol){x}<LEND>[argument 1; litteral](str){ is not a data.frame}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){x}<LEND>[call](){}<LSEP>[](symbol){as.data.frame}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](logical){TRUE}<LEND>[statement 2; control flow](){if}<LSEP>[](symbol){check}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){warning}<LSEP>[argument 0; litteral](str){x[, }<LSEP>[](symbol){k1}<LSEP>[argument 2; litteral](str){] is converted to a factor}<LEND>[statement 1; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){as.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){assoc}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 2; call](){}<LSEP>[](symbol){list}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[statement 4; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){CramerV}<LSEP>[](symbol){x1}<LSEP>[](symbol){x1}<LSEP>[argument 2; litteral](logical){NA}<LEND>[statement 2; control flow](){for}<LSEP>[](symbol){k2}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[](symbol){k1}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x2}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k2}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k2}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k2}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){CramerV}<LSEP>[](symbol){x1}<LSEP>[](symbol){x2}<LSEP>[argument 2; litteral](logical){NA}<LEND>[statement 5; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){assoc}<LEND>[assign](){<-}<LSEP>[](symbol){tschuprow.data.frame}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){check}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.data.frame}<LSEP>[](symbol){x}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LEND>[argument 0; call](){}<LSEP>[](symbol){deparse}<LEND>[argument 0; call](){}<LSEP>[](symbol){substitute}<LSEP>[](symbol){x}<LEND>[argument 1; litteral](str){ is not a data.frame}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){x}<LEND>[call](){}<LSEP>[](symbol){as.data.frame}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](logical){TRUE}<LEND>[statement 2; control flow](){if}<LSEP>[](symbol){check}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){warning}<LSEP>[argument 0; litteral](str){x[, }<LSEP>[](symbol){k1}<LSEP>[argument 2; litteral](str){] is converted to a factor}<LEND>[statement 1; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){as.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){assoc}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 2; call](){}<LSEP>[](symbol){list}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[statement 4; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){TschuprowT}<LSEP>[](symbol){x1}<LSEP>[](symbol){x1}<LEND>[statement 2; control flow](){for}<LSEP>[](symbol){k2}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[](symbol){k1}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x2}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k2}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k2}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k2}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){TschuprowT}<LSEP>[](symbol){x1}<LSEP>[](symbol){x2}<LEND>[statement 5; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){assoc}<LEND>[assign](){<-}<LSEP>[](symbol){pearson.data.frame}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){check}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.data.frame}<LSEP>[](symbol){x}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LEND>[argument 0; call](){}<LSEP>[](symbol){deparse}<LEND>[argument 0; call](){}<LSEP>[](symbol){substitute}<LSEP>[](symbol){x}<LEND>[argument 1; litteral](str){ is not a data.frame}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){x}<LEND>[call](){}<LSEP>[](symbol){as.data.frame}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](logical){TRUE}<LEND>[statement 2; control flow](){if}<LSEP>[](symbol){check}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){warning}<LSEP>[argument 0; litteral](str){x[, }<LSEP>[](symbol){k1}<LSEP>[argument 2; litteral](str){] is converted to a factor}<LEND>[statement 1; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){as.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){assoc}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 2; call](){}<LSEP>[](symbol){list}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[statement 4; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){ContCoef}<LSEP>[](symbol){x1}<LSEP>[](symbol){x1}<LSEP>[argument 2; litteral](logical){FALSE}<LEND>[statement 2; control flow](){for}<LSEP>[](symbol){k2}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[](symbol){k1}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x2}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k2}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k2}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k2}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){ContCoef}<LSEP>[](symbol){x1}<LSEP>[](symbol){x2}<LSEP>[argument 2; litteral](logical){FALSE}<LEND>[statement 5; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){assoc}<LEND>[assign](){<-}<LSEP>[](symbol){phi.data.frame}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){check}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.data.frame}<LSEP>[](symbol){x}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LEND>[argument 0; call](){}<LSEP>[](symbol){deparse}<LEND>[argument 0; call](){}<LSEP>[](symbol){substitute}<LSEP>[](symbol){x}<LEND>[argument 1; litteral](str){ is not a data.frame}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){x}<LEND>[call](){}<LSEP>[](symbol){as.data.frame}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](logical){TRUE}<LEND>[statement 2; control flow](){if}<LSEP>[](symbol){check}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){warning}<LSEP>[argument 0; litteral](str){x[, }<LSEP>[](symbol){k1}<LSEP>[argument 2; litteral](str){] is converted to a factor}<LEND>[statement 1; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){as.factor}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){assoc}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[argument 2; call](){}<LSEP>[](symbol){list}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[argument 1; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){x}<LEND>[statement 4; control flow](){for}<LSEP>[](symbol){k1}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k1}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){Phi}<LSEP>[](symbol){x1}<LSEP>[](symbol){x1}<LEND>[statement 2; control flow](){for}<LSEP>[](symbol){k2}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[](symbol){k1}<LEND>[argument 1; call](){}<LSEP>[](symbol){ncol}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x2}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[](symbol){k2}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k1}<LSEP>[](symbol){k2}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){assoc}<LSEP>[](symbol){k2}<LSEP>[](symbol){k1}<LEND>[call](){}<LSEP>[](symbol){Phi}<LSEP>[](symbol){x1}<LSEP>[](symbol){x2}<LEND>[statement 5; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){assoc} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){warpArea}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){d}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.dtw}<LSEP>[](symbol){d}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){dtw object required}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){ii}<LEND>[call](){}<LSEP>[call name; call](){}<LSEP>[](symbol){::}<LSEP>[](symbol){stats}<LSEP>[](symbol){approx}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){index1}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){index2}<LEND>[argument 2; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){N}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){dg}<LEND>[call](){}<LSEP>[](symbol){seq}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){M}<LEND>[argument 2; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){N}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){ad}<LEND>[call](){}<LSEP>[](symbol){abs}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){ii}<LSEP>[](symbol){y}<LEND>[](symbol){dg}<LEND>[statement 4; call](){}<LSEP>[](symbol){sum}<LSEP>[](symbol){ad}<LEND>[assign](){<-}<LSEP>[](symbol){.localWarpingStretch}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){d}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){id1}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){index1}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){id2}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){index2}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){id2}<LEND>[call](){}<LSEP>[](symbol){/}<LEND>[argument 0; call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){id2}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){N}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){M}<LEND>[statement 3; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){id1}<LSEP>[](symbol){id2}<LEND>[assign](){<-}<LSEP>[](symbol){.localWarpingCost}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){d}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){localCostMatrix}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){A dtw object with keep.interna...}<LEND>[statement 1; call](){}<LSEP>[](symbol){diag}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){localCostMatrix}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){index1}<LEND>[argument 2; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){d}<LSEP>[](symbol){index2} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[variable; litteral](str){ada.formula}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){formula}<LSEP>[](symbol){data}<LSEP>[](symbol){...}<LSEP>[](symbol){subset}<LSEP>[](symbol){na.action}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){m}<LEND>[call](){}<LSEP>[](symbol){match.call}<LSEP>[argument 0; litteral](logical){FALSE}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){model}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){method}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){control}<LEND>[litteral](NULL){NULL}<LEND>[statement 2; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){x}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){y}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){parms}<LEND>[assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){...}<LEND>[litteral](NULL){NULL}<LEND>[statement 3; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){cost}<LEND>[litteral](NULL){NULL}<LEND>[statement 4; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){m}<LSEP>[](symbol){na.action}<LEND>[](symbol){na.action}<LEND>[statement 5; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[[}<LSEP>[](symbol){m}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[call](){}<LSEP>[](symbol){as.name}<LSEP>[argument 0; litteral](str){model.frame}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){m}<LEND>[call](){}<LSEP>[](symbol){eval}<LSEP>[](symbol){m}<LEND>[argument 1; call](){}<LSEP>[](symbol){parent.frame}<LEND>[statement 7; assign](){=}<LSEP>[](symbol){Terms}<LEND>[call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){m}<LSEP>[argument 1; litteral](str){terms}<LEND>[statement 8; assign](){=}<LSEP>[](symbol){y}<LEND>[call](){}<LSEP>[](symbol){as.vector}<LEND>[argument 0; call](){}<LSEP>[](symbol){model.extract}<LSEP>[](symbol){m}<LSEP>[argument 1; litteral](str){response}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){preds}<LEND>[call](){}<LSEP>[](symbol){attr}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){attributes}<LSEP>[](symbol){m}<LEND>[](symbol){terms}<LEND>[argument 1; litteral](str){term.labels}<LEND>[statement 10; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){length}<LSEP>[](symbol){preds}<LEND>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){=}<LSEP>[](symbol){vec}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m}<LSEP>[](symbol){}<LEND>[argument 2; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.na}<LEND>[argument 0; call](){}<LSEP>[](symbol){match}<LEND>[argument 0; call](){}<LSEP>[](symbol){names}<LSEP>[](symbol){m}<LEND>[](symbol){preds}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){x}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LSEP>[](symbol){vec}<LEND>[statement 2; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){names}<LSEP>[](symbol){x}<LEND>[](symbol){preds}<LEND>[false branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){x}<LEND>[call](){}<LSEP>[](symbol){as.data.frame}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m}<LSEP>[](symbol){}<LEND>[argument 2; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.na}<LEND>[argument 0; call](){}<LSEP>[](symbol){match}<LEND>[argument 0; call](){}<LSEP>[](symbol){names}<LSEP>[](symbol){m}<LEND>[](symbol){preds}<LEND>[statement 11; assign](){=}<LSEP>[](symbol){res}<LEND>[call](){}<LSEP>[](symbol){ada.default}<LSEP>[](symbol){x}<LSEP>[](symbol){y}<LSEP>[](symbol){...}<LSEP>[](symbol){na.action}<LEND>[statement 12; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){res}<LSEP>[](symbol){terms}<LEND>[](symbol){Terms}<LEND>[statement 13; assign](){=}<LSEP>[](symbol){cl}<LEND>[call](){}<LSEP>[](symbol){match.call}<LEND>[statement 14; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[[}<LSEP>[](symbol){cl}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[call](){}<LSEP>[](symbol){as.name}<LSEP>[argument 0; litteral](str){ada}<LEND>[statement 15; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){res}<LSEP>[](symbol){call}<LEND>[](symbol){cl}<LEND>[](symbol){res} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){.refstocksurl}<LSEP>[litteral](str){https://api.twelvedata.com/stocks}<LEND>[assign](){<-}<LSEP>[](symbol){ref_stocks}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){sym}<LSEP>[](symbol){as}<LSEP>[](symbol){exchange}<LSEP>[](symbol){country}<LSEP>[](symbol){type}<LSEP>[](symbol){apikey}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){missing}<LSEP>[](symbol){apikey}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){apikey}<LEND>[call](){}<LSEP>[](symbol){.get_apikey}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){as}<LEND>[call](){}<LSEP>[](symbol){match.arg}<LSEP>[](symbol){as}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){type}<LEND>[call](){}<LSEP>[](symbol){match.arg}<LSEP>[](symbol){type}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){qry}<LEND>[call](){}<LSEP>[](symbol){paste0}<LSEP>[](symbol){.refstocksurl}<LSEP>[argument 1; litteral](str){?}<LSEP>[argument 2; litteral](str){&apikey=}<LSEP>[](symbol){apikey}<LEND>[statement 4; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!=}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sym}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[argument 1; litteral](str){}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){qry}<LEND>[call](){}<LSEP>[](symbol){paste0}<LSEP>[](symbol){qry}<LSEP>[argument 1; litteral](str){&symbol=}<LSEP>[](symbol){sym}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!=}<LSEP>[](symbol){exchange}<LSEP>[argument 1; litteral](str){}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){qry}<LEND>[call](){}<LSEP>[](symbol){paste0}<LSEP>[](symbol){qry}<LSEP>[argument 1; litteral](str){&exchange=}<LSEP>[](symbol){exchange}<LEND>[statement 6; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!=}<LSEP>[](symbol){country}<LSEP>[argument 1; litteral](str){}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){qry}<LEND>[call](){}<LSEP>[](symbol){paste0}<LSEP>[](symbol){qry}<LSEP>[argument 1; litteral](str){&country=}<LSEP>[](symbol){country}<LEND>[statement 7; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.na}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){type}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){qry}<LEND>[call](){}<LSEP>[](symbol){paste0}<LSEP>[](symbol){qry}<LSEP>[argument 1; litteral](str){&type=}<LSEP>[](symbol){type}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){accessed}<LEND>[call](){}<LSEP>[](symbol){format}<LEND>[argument 0; call](){}<LSEP>[](symbol){Sys.time}<LEND>[argument 1; litteral](str){UTC}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){res}<LEND>[call](){}<LSEP>[call name; call](){}<LSEP>[](symbol){::}<LSEP>[](symbol){RcppSimdJson}<LSEP>[](symbol){fload}<LEND>[](symbol){qry}<LEND>[statement 10; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){as}<LSEP>[argument 1; litteral](str){raw}<LEND>[true branch; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){res}<LEND>[statement 11; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){length}<LSEP>[](symbol){sym}<LEND>[argument 1; litteral](real){1.000000}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){res}<LEND>[call](){}<LSEP>[](symbol){list}<LSEP>[](symbol){res}<LEND>[statement 12; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){names}<LSEP>[](symbol){res}<LEND>[](symbol){sym}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){dat}<LEND>[call](){}<LSEP>[](symbol){lapply}<LSEP>[](symbol){res}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!=}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){status}<LEND>[argument 1; litteral](str){ok}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){message}<LEND>[argument 1; litteral](logical){FALSE}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){dat}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){data}<LEND>[](symbol){dat}<LEND>[statement 14; assign](){<-}<LSEP>[](symbol){dat}<LEND>[call](){}<LSEP>[](symbol){do.call}<LSEP>[argument 0; litteral](str){rbind}<LSEP>[](symbol){dat}<LEND>[statement 15; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LSEP>[](symbol){dat}<LEND>[true branch; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){The API returned NULL. Try to ...}<LSEP>[argument 1; litteral](logical){FALSE}<LEND>[statement 16; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){dat}<LSEP>[argument 1; litteral](str){accessed}<LEND>[](symbol){accessed}<LEND>[](symbol){dat} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[variable; litteral](str){dht}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){inverted}<LEND>[body; call](){}<LSEP>[](symbol){dtt}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](str){dht}<LSEP>[](symbol){inverted} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){gl.read.dart}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){filename}<LSEP>[](symbol){ind.metafile}<LSEP>[](symbol){recalc}<LSEP>[](symbol){mono.rm}<LSEP>[](symbol){nas}<LSEP>[](symbol){topskip}<LSEP>[](symbol){lastmetric}<LSEP>[](symbol){covfilename}<LSEP>[](symbol){probar}<LSEP>[](symbol){verbose}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){funname}<LEND>[call](){}<LSEP>[](symbol){as.character}<LEND>[argument 0; call](){}<LSEP>[](symbol){[[}<LEND>[argument 0; call](){}<LSEP>[](symbol){match.call}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){build}<LSEP>[litteral](str){Jacob}<LEND>[statement 2; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LSEP>[](symbol){verbose}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){verbose}<LSEP>[litteral](real){2.000000}<LEND>[statement 3; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){|}<LEND>[argument 0; call](){}<LSEP>[](symbol){<}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){>}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){5.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LEND>[argument 0; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){ Warning: Parameter 'verbose'...}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){verbose}<LSEP>[litteral](real){2.000000}<LEND>[statement 4; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){=}<LSEP>[](symbol){probar}<LSEP>[litteral](logical){FALSE}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){5.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LEND>[argument 0; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){Starting}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){[ Build =}<LSEP>[](symbol){build}<LSEP>[argument 4; litteral](str){]\n}<LEND>[false branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LEND>[argument 0; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){Starting}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){\n}<LEND>[statement 6; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LSEP>[](symbol){ind.metafile}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){ind.metafile}<LSEP>[](symbol){covfilename}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){dout}<LEND>[call](){}<LSEP>[](symbol){utils.read.dart}<LSEP>[](symbol){filename}<LSEP>[](symbol){nas}<LSEP>[](symbol){topskip}<LSEP>[](symbol){lastmetric}<LSEP>[](symbol){verbose}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){utils.dart2genlight}<LSEP>[](symbol){dout}<LSEP>[](symbol){ind.metafile}<LSEP>[](symbol){probar}<LSEP>[](symbol){verbose}<LEND>[statement 9; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Data read in. Please check ca...}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){recalc.flags}<LEND>[call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](str){AvgPIC}<LSEP>[argument 1; litteral](str){OneRatioRef}<LSEP>[argument 2; litteral](str){OneRatioSnp}<LSEP>[argument 3; litteral](str){PICRef}<LSEP>[argument 4; litteral](str){PICSnp}<LSEP>[argument 5; litteral](str){CallRate}<LSEP>[argument 6; litteral](str){maf}<LSEP>[argument 7; litteral](str){FreqHets}<LSEP>[argument 8; litteral](str){FreqHomRef}<LSEP>[argument 9; litteral](str){FreqHomSnp}<LSEP>[argument 10; litteral](str){monomorphs}<LSEP>[argument 11; litteral](str){OneRatio}<LSEP>[argument 12; litteral](str){PIC}<LEND>[statement 11; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics.flags}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LEND>[argument 0; call](){}<LSEP>[](symbol){matrix}<LSEP>[argument 0; litteral](logical){TRUE}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[argument 2; call](){}<LSEP>[](symbol){length}<LSEP>[](symbol){recalc.flags}<LEND>[statement 12; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){names}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics.flags}<LEND>[](symbol){recalc.flags}<LEND>[statement 13; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){verbose}<LEND>[litteral](real){2.000000}<LEND>[statement 14; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){rdepth}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Read depth calculated and ad...}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){rdepth}<LEND>[call](){}<LSEP>[](symbol){array}<LSEP>[argument 0; litteral](logical){NA}<LEND>[argument 1; call](){}<LSEP>[](symbol){nLoc}<LSEP>[](symbol){glout}<LEND>[statement 2; control flow](){for}<LSEP>[](symbol){i}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){nLoc}<LSEP>[](symbol){glout}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){called.ind}<LEND>[call](){}<LSEP>[](symbol){round}<LEND>[argument 0; call](){}<LSEP>[](symbol){*}<LEND>[argument 0; call](){}<LSEP>[](symbol){nInd}<LSEP>[](symbol){glout}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){CallRate}<LEND>[](symbol){i}<LEND>[argument 1; litteral](real){0.000000}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){ref.count}<LEND>[call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){called.ind}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){OneRatioRef}<LEND>[](symbol){i}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){alt.count}<LEND>[call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){called.ind}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){OneRatioSnp}<LEND>[](symbol){i}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){sum.count.ref}<LEND>[call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){ref.count}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){AvgCountRef}<LEND>[](symbol){i}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){sum.count.alt}<LEND>[call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){alt.count}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){AvgCountSnp}<LEND>[](symbol){i}<LEND>[statement 5; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){rdepth}<LEND>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){round}<LEND>[argument 0; call](){}<LSEP>[](symbol){/}<LEND>[argument 0; call](){}<LSEP>[](symbol){(}<LEND>[argument 0; call](){}<LSEP>[](symbol){+}<LSEP>[](symbol){sum.count.alt}<LSEP>[](symbol){sum.count.ref}<LEND>[](symbol){called.ind}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 15; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){maf}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){utils.recalc.maf}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 1; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Minor Allele Frequency (maf)...}<LEND>[statement 16; control flow](){if}<LSEP>[](symbol){recalc}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Recalculating locus metrics ...}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){utils.recalc.avgpic}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){utils.recalc.callrate}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){utils.recalc.freqhets}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){utils.recalc.freqhomref}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){utils.recalc.freqhomsnp}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 17; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics.flags}<LEND>[](symbol){monomorphs}<LEND>[litteral](logical){FALSE}<LEND>[statement 18; control flow](){if}<LSEP>[](symbol){mono.rm}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Deleting monomorphic loci (o...}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){glout}<LEND>[call](){}<LSEP>[](symbol){gl.filter.monomorphs}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 19; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics.flags}<LEND>[](symbol){OneRatio}<LEND>[litteral](logical){FALSE}<LEND>[statement 20; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics.flags}<LEND>[](symbol){PIC}<LEND>[litteral](logical){FALSE}<LEND>[statement 21; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){\nSummary of the SNP dataset\n}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ No. of loci:}<LEND>[argument 1; call](){}<LSEP>[](symbol){nLoc}<LSEP>[](symbol){glout}<LEND>[argument 2; litteral](str){\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ No. of individuals:}<LEND>[argument 1; call](){}<LSEP>[](symbol){nInd}<LSEP>[](symbol){glout}<LEND>[argument 2; litteral](str){\n}<LEND>[statement 3; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ No. of populations:}<LEND>[argument 1; call](){}<LSEP>[](symbol){nPop}<LSEP>[](symbol){glout}<LEND>[argument 2; litteral](str){\n}<LEND>[statement 4; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LSEP>[](symbol){recalc}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Locus metrics provided by DA...}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LSEP>[](symbol){mono.rm}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Monomoporhic loci not delete...}<LEND>[statement 22; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.null}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){history}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){history}<LEND>[call](){}<LSEP>[](symbol){list}<LEND>[argument 0; call](){}<LSEP>[](symbol){match.call}<LEND>[statement 23; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LEND>[argument 0; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){Completed:}<LSEP>[](symbol){funname}<LSEP>[argument 2; litteral](str){\n}<LEND>[statement 24; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){glout} |
[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){print.fpcat}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){mean.print}<LSEP>[](symbol){var.print}<LSEP>[](symbol){cor.print}<LSEP>[](symbol){skewness.print}<LSEP>[](symbol){kurtosis.print}<LSEP>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){group variable (observation ti...}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){group}<LEND>[argument 2; litteral](str){\n}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){variables: }<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variables}<LEND>[argument 2; litteral](str){\n\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){observation times:\n}<LEND>[statement 3; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){times}<LEND>[statement 4; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 5; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){inertia\n}<LEND>[statement 6; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){inertia}<LEND>[argument 1; litteral](real){3.000000}<LSEP>[](symbol){...}<LEND>[statement 7; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 8; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){contributions\n}<LEND>[statement 9; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){contributions}<LEND>[](symbol){...}<LEND>[statement 10; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 11; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){qualities\n}<LEND>[statement 12; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){qualities}<LEND>[](symbol){...}<LEND>[statement 13; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 14; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){scores\n}<LEND>[statement 15; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){scores}<LEND>[](symbol){...}<LEND>[statement 16; control flow](){if}<LSEP>[](symbol){mean.print}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){n.group}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){n.var}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){[[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){unlist}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[](symbol){n.group}<LSEP>[](symbol){n.var}<LSEP>[argument 3; litteral](logical){TRUE}<LEND>[argument 4; call](){}<LSEP>[](symbol){list}<LSEP>[argument 0; litteral](NULL){NULL}<LEND>[argument 1; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){mean}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variables}<LEND>[argument 2; litteral](str){.}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LEND>[argument 0; call](){}<LSEP>[](symbol){names}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[](symbol){Means}<LSEP>[argument 2; litteral](logical){TRUE}<LEND>[statement 4; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){Means}<LEND>[argument 1; litteral](real){1.000000}<LEND>[call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){contributions}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>}<LSEP>[](symbol){n.var}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){st.dev}<LEND>[call](){}<LSEP>[](symbol){unlist}<LEND>[argument 0; call](){}<LSEP>[](symbol){lapply}<LEND>[argument 0; call](){}<LSEP>[](symbol){lapply}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variances}<LEND>[](symbol){diag}<LEND>[](symbol){sqrt}<LEND>[false branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){st.dev}<LEND>[call](){}<LSEP>[](symbol){unlist}<LEND>[argument 0; call](){}<LSEP>[](symbol){lapply}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variances}<LEND>[](symbol){sqrt}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LSEP>[](symbol){Means}<LEND>[argument 1; call](){}<LSEP>[](symbol){matrix}<LSEP>[](symbol){st.dev}<LSEP>[](symbol){n.group}<LSEP>[](symbol){n.var}<LSEP>[argument 3; litteral](logical){TRUE}<LEND>[argument 4; call](){}<LSEP>[](symbol){list}<LSEP>[argument 0; litteral](NULL){NULL}<LEND>[argument 1; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){sd}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variables}<LEND>[argument 2; litteral](logical){TRUE}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LSEP>[](symbol){Means}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){norm}<LEND>[](symbol){norm}<LEND>[argument 2; litteral](logical){TRUE}<LEND>[statement 8; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 9; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){means, standard deviations and...}<LEND>[statement 10; call](){}<LSEP>[](symbol){print}<LSEP>[](symbol){Means}<LSEP>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 17; control flow](){if}<LSEP>[](symbol){var.print}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){variances/covariances by group\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variances}<LEND>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 18; control flow](){if}<LSEP>[](symbol){cor.print}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){correlations by group\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){correlations}<LEND>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 19; control flow](){if}<LSEP>[](symbol){skewness.print}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){skewness coefficients by group\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){skewness}<LEND>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 20; control flow](){if}<LSEP>[](symbol){kurtosis.print}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){kurtosis coefficients by group\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){kurtosis}<LEND>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 21; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){invisible}<LSEP>[](symbol){x} |
[](){expression}<LSEP>[litteral](NULL){NULL}<LEND>[assign](){<-}<LSEP>[](symbol){stepPattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){v}<LSEP>[](symbol){norm}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){obj}<LSEP>[litteral](NULL){NULL}<LEND>[statement 1; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.vector}<LSEP>[](symbol){v}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){obj}<LEND>[call](){}<LSEP>[](symbol){matrix}<LSEP>[](symbol){v}<LSEP>[argument 1; litteral](real){4.000000}<LSEP>[argument 2; litteral](logical){TRUE}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){is.matrix}<LSEP>[](symbol){v}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){obj}<LSEP>[](symbol){v}<LEND>[false branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){stepPattern constructor only s...}<LEND>[statement 2; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){class}<LSEP>[](symbol){obj}<LEND>[litteral](str){stepPattern}<LEND>[statement 3; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){obj}<LSEP>[argument 1; litteral](str){npat}<LEND>[call](){}<LSEP>[](symbol){max}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){obj}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 4; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){obj}<LSEP>[argument 1; litteral](str){norm}<LEND>[](symbol){norm}<LEND>[statement 5; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){obj}<LEND>[assign](){<-}<LSEP>[](symbol){is.stepPattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){inherits}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](str){stepPattern}<LEND>[assign](){<-}<LSEP>[](symbol){t.stepPattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){tsp}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LEND>[argument 2; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){3.000000}<LSEP>[argument 2; litteral](real){2.000000}<LSEP>[argument 3; litteral](real){4.000000}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){tsp}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LSEP>[](symbol){tsp}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){on}<LEND>[call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](str){norm}<LEND>[statement 3; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){!}<LEND>[argument 0; call](){}<LSEP>[](symbol){is.na}<LSEP>[](symbol){on}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){on}<LSEP>[argument 1; litteral](str){N}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){tsp}<LSEP>[argument 1; litteral](str){norm}<LEND>[litteral](str){M}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){on}<LSEP>[argument 1; litteral](str){M}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){tsp}<LSEP>[argument 1; litteral](str){norm}<LEND>[litteral](str){N}<LEND>[statement 4; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){tsp}<LEND>[assign](){<-}<LSEP>[](symbol){plot.stepPattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){pats}<LEND>[call](){}<LSEP>[](symbol){unique}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){xr}<LEND>[call](){}<LSEP>[](symbol){max}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){yr}<LEND>[call](){}<LSEP>[](symbol){max}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){fudge}<LEND>[call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){0.500000}<LEND>[argument 1; litteral](real){1.200000}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){alpha}<LSEP>[litteral](real){0.500000}<LEND>[statement 5; call](){}<LSEP>[](symbol){plot}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 2; litteral](str){n}<LSEP>[argument 3; litteral](str){Query index}<LSEP>[argument 4; litteral](str){Reference index}<LSEP>[argument 5; litteral](real){1.000000}<LEND>[argument 6; call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){+}<LSEP>[](symbol){xr}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){+}<LSEP>[](symbol){yr}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[argument 2; litteral](real){1.000000}<LEND>[argument 7; litteral](logical){FALSE}<LSEP>[](symbol){...}<LEND>[statement 6; control flow](){for}<LSEP>[](symbol){i}<LSEP>[](symbol){pats}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){ss}<LEND>[call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[](symbol){i}<LEND>[statement 1; call](){}<LSEP>[](symbol){lines}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 2; litteral](str){o}<LSEP>[](symbol){...}<LEND>[statement 2; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){sum}<LSEP>[](symbol){ss}<LEND>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){next}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){xh}<LEND>[call](){}<LSEP>[](symbol){+}<LEND>[argument 0; call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){alpha}<LEND>[argument 1; call](){}<LSEP>[call name; call](){}<LSEP>[](symbol){::}<LSEP>[](symbol){utils}<LSEP>[](symbol){head}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){*}<LEND>[argument 0; call](){}<LSEP>[](symbol){(}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){alpha}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){yh}<LEND>[call](){}<LSEP>[](symbol){+}<LEND>[argument 0; call](){}<LSEP>[](symbol){*}<LSEP>[](symbol){alpha}<LEND>[argument 1; call](){}<LSEP>[call name; call](){}<LSEP>[](symbol){::}<LSEP>[](symbol){utils}<LSEP>[](symbol){head}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){*}<LEND>[argument 0; call](){}<LSEP>[](symbol){(}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){alpha}<LEND>[argument 1; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[statement 5; call](){}<LSEP>[](symbol){text}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){xh}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){yh}<LEND>[argument 2; call](){}<LSEP>[](symbol){round}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){ss}<LSEP>[argument 2; litteral](real){4.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; litteral](real){2.000000}<LEND>[](symbol){fudge}<LSEP>[](symbol){...}<LEND>[statement 7; call](){}<LSEP>[](symbol){axis}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){:}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){xr}<LEND>[argument 1; litteral](real){0.000000}<LEND>[](symbol){...}<LEND>[statement 8; call](){}<LSEP>[](symbol){axis}<LSEP>[argument 0; litteral](real){2.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){:}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){yr}<LEND>[argument 1; litteral](real){0.000000}<LEND>[](symbol){...}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){endpts}<LEND>[call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){4.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[statement 10; call](){}<LSEP>[](symbol){points}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){endpts}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){x}<LSEP>[](symbol){endpts}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 2; litteral](real){16.000000}<LSEP>[](symbol){...}<LEND>[assign](){<-}<LSEP>[](symbol){print.stepPattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){step.pattern}<LSEP>[](symbol){x}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){np}<LEND>[call](){}<LSEP>[](symbol){max}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){step.pattern}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){head}<LSEP>[litteral](str){g[i,j] = min(\n}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){body}<LSEP>[litteral](str){}<LEND>[statement 4; control flow](){for}<LSEP>[](symbol){p}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){np}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){steps}<LEND>[call](){}<LSEP>[](symbol){.extractpattern}<LSEP>[](symbol){step.pattern}<LSEP>[](symbol){p}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){ns}<LEND>[call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){dim}<LSEP>[](symbol){steps}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){steps}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){steps}<LEND>[argument 1; call](){}<LSEP>[](symbol){:}<LSEP>[](symbol){ns}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[](symbol){}<LEND>[argument 1; litteral](real){3.000000}<LEND>[statement 3; control flow](){for}<LSEP>[](symbol){s}<LEND>[range; call](){}<LSEP>[](symbol){:}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){ns}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){di}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){steps}<LSEP>[](symbol){s}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){dj}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){steps}<LSEP>[](symbol){s}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){cc}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){steps}<LSEP>[](symbol){s}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){dis}<LEND>[call](){}<LSEP>[](symbol){ifelse}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){di}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[argument 1; litteral](str){}<LEND>[argument 2; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){di}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){djs}<LEND>[call](){}<LSEP>[](symbol){ifelse}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){dj}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[argument 1; litteral](str){}<LEND>[argument 2; call](){}<LSEP>[](symbol){-}<LSEP>[](symbol){dj}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){dijs}<LEND>[call](){}<LSEP>[](symbol){sprintf}<LSEP>[argument 0; litteral](str){i%2s,j%2s}<LSEP>[](symbol){dis}<LSEP>[](symbol){djs}<LEND>[statement 6; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){cc}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){gs}<LEND>[call](){}<LSEP>[](symbol){sprintf}<LSEP>[argument 0; litteral](str){ g[%s]}<LSEP>[](symbol){dijs}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){body}<LEND>[call](){}<LSEP>[](symbol){paste}<LSEP>[](symbol){body}<LSEP>[](symbol){gs}<LEND>[false branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){ccs}<LEND>[call](){}<LSEP>[](symbol){ifelse}<LEND>[argument 0; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){cc}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[argument 1; litteral](str){ }<LEND>[argument 2; call](){}<LSEP>[](symbol){sprintf}<LSEP>[argument 0; litteral](str){%2.2g *}<LSEP>[](symbol){cc}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){ds}<LEND>[call](){}<LSEP>[](symbol){sprintf}<LSEP>[argument 0; litteral](str){+%s d[%s]}<LSEP>[](symbol){ccs}<LSEP>[](symbol){dijs}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){body}<LEND>[call](){}<LSEP>[](symbol){paste}<LSEP>[](symbol){body}<LSEP>[](symbol){ds}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){body}<LEND>[call](){}<LSEP>[](symbol){paste}<LSEP>[](symbol){body}<LSEP>[argument 1; litteral](str){,\n}<LSEP>[argument 2; litteral](str){}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){tail}<LSEP>[litteral](str){)\n\n}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){norm}<LEND>[call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){x}<LSEP>[argument 1; litteral](str){norm}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){ntxt}<LEND>[call](){}<LSEP>[](symbol){sprintf}<LSEP>[argument 0; litteral](str){Normalization hint: %s\n}<LSEP>[](symbol){norm}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){rv}<LEND>[call](){}<LSEP>[](symbol){paste}<LSEP>[](symbol){head}<LSEP>[](symbol){body}<LSEP>[](symbol){tail}<LSEP>[](symbol){ntxt}<LEND>[statement 9; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){Step pattern recursion:\n}<LEND>[statement 10; call](){}<LSEP>[](symbol){cat}<LSEP>[](symbol){rv}<LEND>[assign](){<-}<LSEP>[](symbol){.checkpattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){sp}<LEND>[body; block](){}<LEND>[assign](){<-}<LSEP>[](symbol){.mkDirDeltas}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){dir}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){dir}<LEND>[argument 1; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){dir}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){4.000000}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[](symbol){}<LSEP>[argument 3; litteral](logical){FALSE}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m1}<LSEP>[](symbol){}<LEND>[argument 2; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){4.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){m1}<LSEP>[](symbol){}<LEND>[argument 2; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[statement 3; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){m1}<LEND>[assign](){<-}<LSEP>[](symbol){.extractpattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){sp}<LSEP>[](symbol){sn}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){sbs}<LEND>[call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sp}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[](symbol){sn}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){spl}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){sp}<LSEP>[](symbol){sbs}<LEND>[argument 2; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 3; litteral](logical){FALSE}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){nr}<LEND>[call](){}<LSEP>[](symbol){nrow}<LSEP>[](symbol){spl}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){spl}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){spl}<LEND>[argument 1; call](){}<LSEP>[](symbol){:}<LSEP>[](symbol){nr}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[](symbol){}<LSEP>[argument 3; litteral](logical){FALSE}<LEND>[statement 4; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){spl}<LEND>[assign](){<-}<LSEP>[](symbol){.Pnew}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){p}<LSEP>[](symbol){subt}<LSEP>[](symbol){smoo}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){sp}<LEND>[call](){}<LSEP>[](symbol){list}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[litteral](real){0.000000}<LEND>[statement 2; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[litteral](real){0.000000}<LEND>[statement 3; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){p}<LEND>[](symbol){p}<LEND>[statement 4; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){subt}<LEND>[](symbol){subt}<LEND>[statement 5; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){smoo}<LEND>[](symbol){smoo}<LEND>[statement 6; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){sp}<LEND>[assign](){<-}<LSEP>[](symbol){.Pstep}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){sp}<LSEP>[](symbol){di}<LSEP>[](symbol){dj}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[](symbol){di}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[](symbol){dj}<LEND>[statement 2; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){sp}<LEND>[assign](){<-}<LSEP>[](symbol){.Pend}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){sp}<LSEP>[](symbol){subt}<LSEP>[](symbol){smoo}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){si}<LEND>[call](){}<LSEP>[](symbol){cumsum}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[statement 1; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){sj}<LEND>[call](){}<LSEP>[](symbol){cumsum}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[statement 2; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){ni}<LEND>[call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){max}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){si}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){si}<LEND>[statement 3; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){nj}<LEND>[call](){}<LSEP>[](symbol){-}<LEND>[argument 0; call](){}<LSEP>[](symbol){max}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){sj}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){sj}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){w}<LSEP>[litteral](NULL){NULL}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){subt}<LEND>[argument 1; litteral](str){a}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){pmin}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){subt}<LEND>[argument 1; litteral](str){b}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){pmax}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){subt}<LEND>[argument 1; litteral](str){c}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){subt}<LEND>[argument 1; litteral](str){d}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){+}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){j}<LEND>[false branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){stop}<LSEP>[argument 0; litteral](str){Unsupported subtype}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){w}<LEND>[argument 1; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[statement 7; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){smoo}<LEND>[true branch; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){rep}<LEND>[argument 0; call](){}<LSEP>[](symbol){mean}<LSEP>[](symbol){w}<LEND>[argument 1; call](){}<LSEP>[](symbol){length}<LSEP>[](symbol){w}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){w}<LEND>[call](){}<LSEP>[](symbol){c}<LEND>[argument 0; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[](symbol){w}<LEND>[statement 9; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){w}<LEND>[](symbol){w}<LEND>[statement 10; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){sp}<LEND>[assign](){<-}<LSEP>[](symbol){.PtoMx}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){sp}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){nr}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){i}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){mx}<LEND>[call](){}<LSEP>[](symbol){matrix}<LSEP>[](symbol){nr}<LSEP>[argument 1; litteral](real){4.000000}<LEND>[statement 2; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){mx}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){p}<LEND>[statement 3; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){mx}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){ni}<LEND>[statement 4; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){mx}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){nj}<LEND>[statement 5; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LSEP>[](symbol){mx}<LSEP>[](symbol){}<LSEP>[argument 2; litteral](real){4.000000}<LEND>[call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){sp}<LSEP>[](symbol){w}<LEND>[statement 6; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){mx}<LEND>[assign](){<-}<LSEP>[](symbol){rabinerJuangStepPattern}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){type}<LSEP>[](symbol){slope.weighting}<LSEP>[](symbol){smoothed}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){sw}<LSEP>[](symbol){slope.weighting}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){sm}<LSEP>[](symbol){smoothed}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){r}<LEND>[call](){}<LSEP>[](symbol){switch}<LSEP>[](symbol){type}<LEND>[argument 1; call](){}<LSEP>[](symbol){.RJtypeI}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[argument 2; call](){}<LSEP>[](symbol){.RJtypeII}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[argument 3; call](){}<LSEP>[](symbol){.RJtypeIII}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[argument 4; call](){}<LSEP>[](symbol){.RJtypeIV}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[argument 5; call](){}<LSEP>[](symbol){.RJtypeV}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[argument 6; call](){}<LSEP>[](symbol){.RJtypeVI}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[argument 7; call](){}<LSEP>[](symbol){.RJtypeVII}<LSEP>[](symbol){sw}<LSEP>[](symbol){sm}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){norm}<LSEP>[litteral](logical){NA}<LEND>[statement 4; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){sw}<LSEP>[argument 1; litteral](str){c}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){norm}<LSEP>[litteral](str){N}<LEND>[false branch; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){==}<LSEP>[](symbol){sw}<LSEP>[argument 1; litteral](str){d}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){norm}<LSEP>[litteral](str){N+M}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){rv}<LEND>[call](){}<LSEP>[](symbol){as.vector}<LEND>[argument 0; call](){}<LSEP>[](symbol){t}<LSEP>[](symbol){r}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){rs}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LSEP>[](symbol){rv}<LEND>[statement 7; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){rs}<LSEP>[argument 1; litteral](str){norm}<LEND>[](symbol){norm}<LEND>[statement 8; assign](){<-}<LSEP>[variable; call](){}<LSEP>[](symbol){attr}<LSEP>[](symbol){rs}<LSEP>[argument 1; litteral](str){call}<LEND>[call](){}<LSEP>[](symbol){match.call}<LEND>[statement 9; call](){}<LSEP>[](symbol){return}<LSEP>[](symbol){rs}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeI}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 12; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeII}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 12; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 14; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeIII}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 12; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeIV}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 12; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 14; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){4.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 15; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 16; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 17; assign](){<-}<LSEP>[](symbol){m4}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 18; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LSEP>[](symbol){m4}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeV}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 12; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 14; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 15; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){4.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 16; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 17; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 18; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 19; assign](){<-}<LSEP>[](symbol){m4}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 20; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){5.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 21; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 22; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 23; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 24; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 25; assign](){<-}<LSEP>[](symbol){m5}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 26; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LSEP>[](symbol){m4}<LSEP>[](symbol){m5}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeVI}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 12; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 14; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 15; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 16; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LEND>[assign](){<-}<LSEP>[](symbol){.RJtypeVII}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[body; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 4; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 5; assign](){<-}<LSEP>[](symbol){m1}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 8; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 9; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 10; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 11; assign](){<-}<LSEP>[](symbol){m2}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 12; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){3.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 13; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[statement 14; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 15; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 16; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 17; assign](){<-}<LSEP>[](symbol){m3}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 18; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){4.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 19; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 20; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 21; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 22; assign](){<-}<LSEP>[](symbol){m4}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 23; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){5.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 24; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 25; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 26; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 27; assign](){<-}<LSEP>[](symbol){m5}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 28; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){6.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 29; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[statement 30; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[statement 31; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 32; assign](){<-}<LSEP>[](symbol){m6}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 33; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){7.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 34; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[statement 35; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 36; assign](){<-}<LSEP>[](symbol){m7}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 37; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){8.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 38; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[statement 39; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 40; assign](){<-}<LSEP>[](symbol){m8}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 41; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pnew}<LSEP>[argument 0; litteral](real){9.000000}<LSEP>[](symbol){s}<LSEP>[](symbol){m}<LEND>[statement 42; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pstep}<LSEP>[](symbol){t}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[statement 43; assign](){<-}<LSEP>[](symbol){t}<LEND>[call](){}<LSEP>[](symbol){.Pend}<LSEP>[](symbol){t}<LEND>[statement 44; assign](){<-}<LSEP>[](symbol){m9}<LEND>[call](){}<LSEP>[](symbol){.PtoMx}<LSEP>[](symbol){t}<LEND>[statement 45; call](){}<LSEP>[](symbol){return}<LEND>[argument 0; call](){}<LSEP>[](symbol){rbind}<LSEP>[](symbol){m1}<LSEP>[](symbol){m2}<LSEP>[](symbol){m3}<LSEP>[](symbol){m4}<LSEP>[](symbol){m5}<LSEP>[](symbol){m6}<LSEP>[](symbol){m7}<LSEP>[](symbol){m8}<LSEP>[](symbol){m9}<LEND>[assign](){<-}<LSEP>[](symbol){symmetric1}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){0.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LEND>[assign](){<-}<LSEP>[](symbol){symmetric2}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){0.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){asymmetric}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){0.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){2.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){.symmetricVelichkoZagoruyko}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){2.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){1.000000}<LEND>[argument 7; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.001000}<LEND>[argument 12; litteral](real){3.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){0.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[assign](){<-}<LSEP>[](symbol){.asymmetricItakura}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){2.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LSEP>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){0.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){4.000000}<LSEP>[argument 29; litteral](real){2.000000}<LSEP>[argument 30; litteral](real){2.000000}<LEND>[argument 31; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 32; litteral](real){4.000000}<LSEP>[argument 33; litteral](real){1.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){1.000000}<LSEP>[argument 36; litteral](real){4.000000}<LSEP>[argument 37; litteral](real){0.000000}<LSEP>[argument 38; litteral](real){0.000000}<LSEP>[argument 39; litteral](real){1.000000}<LEND>[assign](){<-}<LSEP>[](symbol){symmetricP0}<LSEP>[](symbol){symmetric2}<LEND>[assign](){<-}<LSEP>[](symbol){asymmetricP0}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){0.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){0.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){.asymmetricP0b}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){0.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){2.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){1.000000}<LEND>[argument 7; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){3.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){0.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){symmetricP05}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){2.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){1.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){1.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){2.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){2.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){1.000000}<LSEP>[argument 23; litteral](real){2.000000}<LSEP>[argument 24; litteral](real){2.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){0.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){1.000000}<LSEP>[argument 30; litteral](real){1.000000}<LEND>[argument 31; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 32; litteral](real){3.000000}<LSEP>[argument 33; litteral](real){0.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){2.000000}<LSEP>[argument 36; litteral](real){4.000000}<LSEP>[argument 37; litteral](real){2.000000}<LSEP>[argument 38; litteral](real){1.000000}<LEND>[argument 39; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 40; litteral](real){4.000000}<LSEP>[argument 41; litteral](real){1.000000}<LSEP>[argument 42; litteral](real){0.000000}<LSEP>[argument 43; litteral](real){2.000000}<LSEP>[argument 44; litteral](real){4.000000}<LSEP>[argument 45; litteral](real){0.000000}<LSEP>[argument 46; litteral](real){0.000000}<LSEP>[argument 47; litteral](real){1.000000}<LSEP>[argument 48; litteral](real){5.000000}<LSEP>[argument 49; litteral](real){3.000000}<LSEP>[argument 50; litteral](real){1.000000}<LEND>[argument 51; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 52; litteral](real){5.000000}<LSEP>[argument 53; litteral](real){2.000000}<LSEP>[argument 54; litteral](real){0.000000}<LSEP>[argument 55; litteral](real){2.000000}<LSEP>[argument 56; litteral](real){5.000000}<LSEP>[argument 57; litteral](real){1.000000}<LSEP>[argument 58; litteral](real){0.000000}<LSEP>[argument 59; litteral](real){1.000000}<LSEP>[argument 60; litteral](real){5.000000}<LSEP>[argument 61; litteral](real){0.000000}<LSEP>[argument 62; litteral](real){0.000000}<LSEP>[argument 63; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){asymmetricP05}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){2.000000}<LEND>[argument 7; call](){}<LSEP>[](symbol){/}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){/}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[argument 12; litteral](real){1.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){/}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){2.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){2.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){1.000000}<LSEP>[argument 23; litteral](real){0.500000}<LSEP>[argument 24; litteral](real){2.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){0.000000}<LSEP>[argument 27; litteral](real){0.500000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){1.000000}<LSEP>[argument 30; litteral](real){1.000000}<LEND>[argument 31; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 32; litteral](real){3.000000}<LSEP>[argument 33; litteral](real){0.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){1.000000}<LSEP>[argument 36; litteral](real){4.000000}<LSEP>[argument 37; litteral](real){2.000000}<LSEP>[argument 38; litteral](real){1.000000}<LEND>[argument 39; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 40; litteral](real){4.000000}<LSEP>[argument 41; litteral](real){1.000000}<LSEP>[argument 42; litteral](real){0.000000}<LSEP>[argument 43; litteral](real){1.000000}<LSEP>[argument 44; litteral](real){4.000000}<LSEP>[argument 45; litteral](real){0.000000}<LSEP>[argument 46; litteral](real){0.000000}<LSEP>[argument 47; litteral](real){1.000000}<LSEP>[argument 48; litteral](real){5.000000}<LSEP>[argument 49; litteral](real){3.000000}<LSEP>[argument 50; litteral](real){1.000000}<LEND>[argument 51; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 52; litteral](real){5.000000}<LSEP>[argument 53; litteral](real){2.000000}<LSEP>[argument 54; litteral](real){0.000000}<LSEP>[argument 55; litteral](real){1.000000}<LSEP>[argument 56; litteral](real){5.000000}<LSEP>[argument 57; litteral](real){1.000000}<LSEP>[argument 58; litteral](real){0.000000}<LSEP>[argument 59; litteral](real){1.000000}<LSEP>[argument 60; litteral](real){5.000000}<LSEP>[argument 61; litteral](real){0.000000}<LSEP>[argument 62; litteral](real){0.000000}<LSEP>[argument 63; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){symmetricP1}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){1.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){2.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){2.000000}<LSEP>[argument 22; litteral](real){1.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){1.000000}<LSEP>[argument 26; litteral](real){0.000000}<LSEP>[argument 27; litteral](real){2.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){asymmetricP1}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){1.000000}<LSEP>[argument 7; litteral](real){0.500000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){0.500000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){2.000000}<LSEP>[argument 22; litteral](real){1.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){1.000000}<LSEP>[argument 26; litteral](real){0.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){symmetricP2}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){2.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){1.000000}<LSEP>[argument 11; litteral](real){2.000000}<LSEP>[argument 12; litteral](real){1.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){2.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){2.000000}<LSEP>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){3.000000}<LSEP>[argument 26; litteral](real){2.000000}<LEND>[argument 27; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){2.000000}<LSEP>[argument 30; litteral](real){1.000000}<LSEP>[argument 31; litteral](real){2.000000}<LSEP>[argument 32; litteral](real){3.000000}<LSEP>[argument 33; litteral](real){1.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){2.000000}<LSEP>[argument 36; litteral](real){3.000000}<LSEP>[argument 37; litteral](real){0.000000}<LSEP>[argument 38; litteral](real){0.000000}<LSEP>[argument 39; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){asymmetricP2}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){3.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){2.000000}<LEND>[argument 7; call](){}<LSEP>[](symbol){/}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){/}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[argument 12; litteral](real){1.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){/}<LSEP>[argument 0; litteral](real){2.000000}<LSEP>[argument 1; litteral](real){3.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){2.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LSEP>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){3.000000}<LSEP>[argument 26; litteral](real){2.000000}<LEND>[argument 27; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){2.000000}<LSEP>[argument 30; litteral](real){1.000000}<LSEP>[argument 31; litteral](real){1.000000}<LSEP>[argument 32; litteral](real){3.000000}<LSEP>[argument 33; litteral](real){1.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){1.000000}<LSEP>[argument 36; litteral](real){3.000000}<LSEP>[argument 37; litteral](real){0.000000}<LSEP>[argument 38; litteral](real){0.000000}<LSEP>[argument 39; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){typeIa}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){0.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){0.000000}<LEND>[assign](){<-}<LSEP>[](symbol){typeIb}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.000000}<LEND>[assign](){<-}<LSEP>[](symbol){typeIc}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){0.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){typeId}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){2.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){2.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){typeIas}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){0.500000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){0.500000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){0.500000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){0.500000}<LEND>[assign](){<-}<LSEP>[](symbol){typeIbs}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.000000}<LEND>[assign](){<-}<LSEP>[](symbol){typeIcs}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){1.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){0.500000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){0.500000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){typeIds}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.500000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.500000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){2.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){1.500000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.500000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){typeIIa}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){2.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){2.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LEND>[assign](){<-}<LSEP>[](symbol){typeIIb}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){2.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){2.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){2.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){2.000000}<LEND>[assign](){<-}<LSEP>[](symbol){typeIIc}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){2.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){2.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){2.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){typeIId}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){2.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){3.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){2.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){3.000000}<LEND>[argument 1; litteral](str){N+M}<LEND>[assign](){<-}<LSEP>[](symbol){typeIIIc}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){2.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){1.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){2.000000}<LSEP>[argument 18; litteral](real){1.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LSEP>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){0.000000}<LSEP>[argument 27; litteral](real){1.000000}<LSEP>[argument 28; litteral](real){4.000000}<LSEP>[argument 29; litteral](real){2.000000}<LSEP>[argument 30; litteral](real){2.000000}<LEND>[argument 31; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 32; litteral](real){4.000000}<LSEP>[argument 33; litteral](real){1.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){1.000000}<LSEP>[argument 36; litteral](real){4.000000}<LSEP>[argument 37; litteral](real){0.000000}<LSEP>[argument 38; litteral](real){0.000000}<LSEP>[argument 39; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){typeIVc}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LSEP>[argument 8; litteral](real){2.000000}<LSEP>[argument 9; litteral](real){1.000000}<LSEP>[argument 10; litteral](real){2.000000}<LEND>[argument 11; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){0.000000}<LSEP>[argument 14; litteral](real){0.000000}<LSEP>[argument 15; litteral](real){1.000000}<LSEP>[argument 16; litteral](real){3.000000}<LSEP>[argument 17; litteral](real){1.000000}<LSEP>[argument 18; litteral](real){3.000000}<LEND>[argument 19; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){0.000000}<LSEP>[argument 22; litteral](real){0.000000}<LSEP>[argument 23; litteral](real){1.000000}<LSEP>[argument 24; litteral](real){4.000000}<LSEP>[argument 25; litteral](real){2.000000}<LSEP>[argument 26; litteral](real){1.000000}<LEND>[argument 27; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 28; litteral](real){4.000000}<LSEP>[argument 29; litteral](real){1.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){1.000000}<LSEP>[argument 32; litteral](real){4.000000}<LSEP>[argument 33; litteral](real){0.000000}<LSEP>[argument 34; litteral](real){0.000000}<LSEP>[argument 35; litteral](real){1.000000}<LSEP>[argument 36; litteral](real){5.000000}<LSEP>[argument 37; litteral](real){2.000000}<LSEP>[argument 38; litteral](real){2.000000}<LEND>[argument 39; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 40; litteral](real){5.000000}<LSEP>[argument 41; litteral](real){1.000000}<LSEP>[argument 42; litteral](real){0.000000}<LSEP>[argument 43; litteral](real){1.000000}<LSEP>[argument 44; litteral](real){5.000000}<LSEP>[argument 45; litteral](real){0.000000}<LSEP>[argument 46; litteral](real){0.000000}<LSEP>[argument 47; litteral](real){1.000000}<LSEP>[argument 48; litteral](real){6.000000}<LSEP>[argument 49; litteral](real){2.000000}<LSEP>[argument 50; litteral](real){3.000000}<LEND>[argument 51; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 52; litteral](real){6.000000}<LSEP>[argument 53; litteral](real){1.000000}<LSEP>[argument 54; litteral](real){0.000000}<LSEP>[argument 55; litteral](real){1.000000}<LSEP>[argument 56; litteral](real){6.000000}<LSEP>[argument 57; litteral](real){0.000000}<LSEP>[argument 58; litteral](real){0.000000}<LSEP>[argument 59; litteral](real){1.000000}<LSEP>[argument 60; litteral](real){7.000000}<LSEP>[argument 61; litteral](real){3.000000}<LSEP>[argument 62; litteral](real){1.000000}<LEND>[argument 63; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 64; litteral](real){7.000000}<LSEP>[argument 65; litteral](real){2.000000}<LSEP>[argument 66; litteral](real){0.000000}<LSEP>[argument 67; litteral](real){1.000000}<LSEP>[argument 68; litteral](real){7.000000}<LSEP>[argument 69; litteral](real){1.000000}<LSEP>[argument 70; litteral](real){0.000000}<LSEP>[argument 71; litteral](real){1.000000}<LSEP>[argument 72; litteral](real){7.000000}<LSEP>[argument 73; litteral](real){0.000000}<LSEP>[argument 74; litteral](real){0.000000}<LSEP>[argument 75; litteral](real){1.000000}<LSEP>[argument 76; litteral](real){8.000000}<LSEP>[argument 77; litteral](real){3.000000}<LSEP>[argument 78; litteral](real){2.000000}<LEND>[argument 79; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 80; litteral](real){8.000000}<LSEP>[argument 81; litteral](real){2.000000}<LSEP>[argument 82; litteral](real){0.000000}<LSEP>[argument 83; litteral](real){1.000000}<LSEP>[argument 84; litteral](real){8.000000}<LSEP>[argument 85; litteral](real){1.000000}<LSEP>[argument 86; litteral](real){0.000000}<LSEP>[argument 87; litteral](real){1.000000}<LSEP>[argument 88; litteral](real){8.000000}<LSEP>[argument 89; litteral](real){0.000000}<LSEP>[argument 90; litteral](real){0.000000}<LSEP>[argument 91; litteral](real){1.000000}<LSEP>[argument 92; litteral](real){9.000000}<LSEP>[argument 93; litteral](real){3.000000}<LSEP>[argument 94; litteral](real){3.000000}<LEND>[argument 95; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 96; litteral](real){9.000000}<LSEP>[argument 97; litteral](real){2.000000}<LSEP>[argument 98; litteral](real){0.000000}<LSEP>[argument 99; litteral](real){1.000000}<LSEP>[argument 100; litteral](real){9.000000}<LSEP>[argument 101; litteral](real){1.000000}<LSEP>[argument 102; litteral](real){0.000000}<LSEP>[argument 103; litteral](real){1.000000}<LSEP>[argument 104; litteral](real){9.000000}<LSEP>[argument 105; litteral](real){0.000000}<LSEP>[argument 106; litteral](real){0.000000}<LSEP>[argument 107; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N}<LEND>[assign](){<-}<LSEP>[](symbol){mori2006}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){2.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){1.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){2.000000}<LSEP>[argument 8; litteral](real){1.000000}<LSEP>[argument 9; litteral](real){0.000000}<LSEP>[argument 10; litteral](real){0.000000}<LSEP>[argument 11; litteral](real){1.000000}<LSEP>[argument 12; litteral](real){2.000000}<LSEP>[argument 13; litteral](real){1.000000}<LSEP>[argument 14; litteral](real){1.000000}<LEND>[argument 15; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 16; litteral](real){2.000000}<LSEP>[argument 17; litteral](real){0.000000}<LSEP>[argument 18; litteral](real){0.000000}<LSEP>[argument 19; litteral](real){3.000000}<LSEP>[argument 20; litteral](real){3.000000}<LSEP>[argument 21; litteral](real){1.000000}<LSEP>[argument 22; litteral](real){2.000000}<LEND>[argument 23; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 24; litteral](real){3.000000}<LSEP>[argument 25; litteral](real){0.000000}<LSEP>[argument 26; litteral](real){1.000000}<LSEP>[argument 27; litteral](real){3.000000}<LSEP>[argument 28; litteral](real){3.000000}<LSEP>[argument 29; litteral](real){0.000000}<LSEP>[argument 30; litteral](real){0.000000}<LSEP>[argument 31; litteral](real){3.000000}<LEND>[argument 1; litteral](str){M}<LEND>[assign](){<-}<LSEP>[](symbol){rigid}<LEND>[call](){}<LSEP>[](symbol){stepPattern}<LEND>[argument 0; call](){}<LSEP>[](symbol){c}<LSEP>[argument 0; litteral](real){1.000000}<LSEP>[argument 1; litteral](real){1.000000}<LSEP>[argument 2; litteral](real){1.000000}<LEND>[argument 3; call](){}<LSEP>[](symbol){-}<LSEP>[argument 0; litteral](real){1.000000}<LEND>[argument 4; litteral](real){1.000000}<LSEP>[argument 5; litteral](real){0.000000}<LSEP>[argument 6; litteral](real){0.000000}<LSEP>[argument 7; litteral](real){1.000000}<LEND>[argument 1; litteral](str){N} |
"[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){logistic}<LEND>[](){function}<LSEP>[](pairlist(...TRUNCATED) |
End of preview. Expand
in Dataset Viewer.
No dataset card yet
- Downloads last month
- 31