ast
stringlengths 16
28.2M
| input_ids
sequence | attention_mask
sequence | labels
sequence |
|---|---|---|---|
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] |
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call](){}<LSEP>[](symbol){@}<LSEP>[](symbol){glout}<LSEP>[](symbol){other}<LEND>[](symbol){loc.metrics}<LEND>[](symbol){maf}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){utils.recalc.maf}<LSEP>[](symbol){glout}<LSEP>[argument 1; litteral](real){0.000000}<LEND>[statement 1; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Minor Allele Frequency (maf)...}<LEND>[statement 16; control flow](){if}<LSEP>[](symbol){recalc}<LEND>[true branch; block](){}<LSEP>[statement 0; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>=}<LSEP>[](symbol){verbose}<LSEP>[argument 1; litteral](real){2.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){ Recalculating locus metrics ...}<LEND>[statement 1; 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[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){print.fpcat}<LEND>[](){function}<LSEP>[](pairlist){}<LSEP>[](symbol){x}<LSEP>[](symbol){mean.print}<LSEP>[](symbol){var.print}<LSEP>[](symbol){cor.print}<LSEP>[](symbol){skewness.print}<LSEP>[](symbol){kurtosis.print}<LSEP>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[body; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){group variable (observation ti...}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){group}<LEND>[argument 2; litteral](str){\n}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){variables: }<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variables}<LEND>[argument 2; litteral](str){\n\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){observation times:\n}<LEND>[statement 3; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){times}<LEND>[statement 4; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 5; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){inertia\n}<LEND>[statement 6; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){inertia}<LEND>[argument 1; litteral](real){3.000000}<LSEP>[](symbol){...}<LEND>[statement 7; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 8; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){contributions\n}<LEND>[statement 9; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){contributions}<LEND>[](symbol){...}<LEND>[statement 10; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 11; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){qualities\n}<LEND>[statement 12; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){qualities}<LEND>[](symbol){...}<LEND>[statement 13; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 14; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){scores\n}<LEND>[statement 15; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){scores}<LEND>[](symbol){...}<LEND>[statement 16; control flow](){if}<LSEP>[](symbol){mean.print}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){n.group}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[statement 1; assign](){<-}<LSEP>[](symbol){n.var}<LEND>[call](){}<LSEP>[](symbol){length}<LEND>[argument 0; call](){}<LSEP>[](symbol){[[}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 2; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){matrix}<LEND>[argument 0; call](){}<LSEP>[](symbol){unlist}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[](symbol){n.group}<LSEP>[](symbol){n.var}<LSEP>[argument 3; litteral](logical){TRUE}<LEND>[argument 4; call](){}<LSEP>[](symbol){list}<LSEP>[argument 0; litteral](NULL){NULL}<LEND>[argument 1; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){mean}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variables}<LEND>[argument 2; litteral](str){.}<LEND>[statement 3; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LEND>[argument 0; call](){}<LSEP>[](symbol){names}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){means}<LEND>[](symbol){Means}<LSEP>[argument 2; litteral](logical){TRUE}<LEND>[statement 4; assign](){=}<LSEP>[variable; call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LSEP>[](symbol){Means}<LEND>[argument 1; litteral](real){1.000000}<LEND>[call](){}<LSEP>[](symbol){[}<LEND>[argument 0; call](){}<LSEP>[](symbol){colnames}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){contributions}<LEND>[argument 1; litteral](real){1.000000}<LEND>[statement 5; control flow](){if}<LSEP>[condition; call](){}<LSEP>[](symbol){>}<LSEP>[](symbol){n.var}<LSEP>[argument 1; litteral](real){1.000000}<LEND>[true branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){st.dev}<LEND>[call](){}<LSEP>[](symbol){unlist}<LEND>[argument 0; call](){}<LSEP>[](symbol){lapply}<LEND>[argument 0; call](){}<LSEP>[](symbol){lapply}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variances}<LEND>[](symbol){diag}<LEND>[](symbol){sqrt}<LEND>[false branch; block](){}<LSEP>[statement 0; assign](){<-}<LSEP>[](symbol){st.dev}<LEND>[call](){}<LSEP>[](symbol){unlist}<LEND>[argument 0; call](){}<LSEP>[](symbol){lapply}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variances}<LEND>[](symbol){sqrt}<LEND>[statement 6; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LSEP>[](symbol){Means}<LEND>[argument 1; call](){}<LSEP>[](symbol){matrix}<LSEP>[](symbol){st.dev}<LSEP>[](symbol){n.group}<LSEP>[](symbol){n.var}<LSEP>[argument 3; litteral](logical){TRUE}<LEND>[argument 4; call](){}<LSEP>[](symbol){list}<LSEP>[argument 0; litteral](NULL){NULL}<LEND>[argument 1; call](){}<LSEP>[](symbol){paste}<LSEP>[argument 0; litteral](str){sd}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variables}<LEND>[argument 2; litteral](logical){TRUE}<LEND>[statement 7; assign](){<-}<LSEP>[](symbol){Means}<LEND>[call](){}<LSEP>[](symbol){data.frame}<LSEP>[](symbol){Means}<LEND>[argument 1; call](){}<LSEP>[](symbol){$}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){norm}<LEND>[](symbol){norm}<LEND>[argument 2; litteral](logical){TRUE}<LEND>[statement 8; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 9; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){means, standard deviations and...}<LEND>[statement 10; call](){}<LSEP>[](symbol){print}<LSEP>[](symbol){Means}<LSEP>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 17; control flow](){if}<LSEP>[](symbol){var.print}<LEND>[true branch; block](){}<LSEP>[statement 0; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){------------------------------...}<LEND>[statement 1; call](){}<LSEP>[](symbol){cat}<LSEP>[argument 0; litteral](str){variances/covariances by group\n}<LEND>[statement 2; call](){}<LSEP>[](symbol){print}<LEND>[argument 0; call](){}<LSEP>[](symbol){$}<LSEP>[](symbol){x}<LSEP>[](symbol){variances}<LEND>[](symbol){digits}<LSEP>[](symbol){...}<LEND>[statement 18; control flow](){if}<LSEP>[](symbol){cor.print}<LEND>[true branch; block](){}<LSEP>[statement 0; 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"[](){expression}<LSEP>[assign](){<-}<LSEP>[](symbol){logistic}<LEND>[](){function}<LSEP>[](pairlist(...TRUNCATED) | [0,586,569,266,50,57,43,54,265,317,320,50,57,43,54,272,276,263,3114,266,50,43,52,42,420,417,266,50,5(...TRUNCATED) | [1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED) | [0,586,569,266,50,57,43,54,265,317,320,50,57,43,54,272,276,263,3114,266,50,43,52,42,420,417,266,50,5(...TRUNCATED) |
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