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Compact Convolutional Neural Networks for Classification of Asynchronous Steady-state Visual Evoked Potentials
Steady-State Visual Evoked Potentials (SSVEPs) are neural oscillations from the parietal and occipital regions of the brain that are evoked from flickering visual stimuli. SSVEPs are robust signals measurable in the electroencephalogram (EEG) and are commonly used in brain-computer interfaces (BCIs). However, methods for high-accuracy decoding of SSVEPs usually require hand-crafted approaches that leverage domain-specific knowledge of the stimulus signals, such as specific temporal frequencies in the visual stimuli and their relative spatial arrangement. When this knowledge is unavailable, such as when SSVEP signals are acquired asynchronously, such approaches tend to fail. In this paper, we show how a compact convolutional neural network (Compact-CNN), which only requires raw EEG signals for automatic feature extraction, can be used to decode signals from a 12-class SSVEP dataset without the need for any domain-specific knowledge or calibration data. We report across subject mean accuracy of approximately 80% (chance being 8.3%) and show this is substantially better than current state-of-the-art hand-crafted approaches using canonical correlation analysis (CCA) and Combined-CCA. Furthermore, we analyze our Compact-CNN to examine the underlying feature representation, discovering that the deep learner extracts additional phase and amplitude related features associated with the structure of the dataset. We discuss how our Compact-CNN shows promise for BCI applications that allow users to freely gaze/attend to any stimulus at any time (e.g., asynchronous BCI) as well as provides a method for analyzing SSVEP signals in a way that might augment our understanding about the basic processing in the visual cortex.
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Long-range proximity effect in Nb-based heterostructures induced by a magnetically inhomogeneous permalloy layer
Odd-frequency triplet Cooper pairs are believed to be the carriers of long-range superconducting correlations in ferromagnets. Such triplet pairs are generated by inhomogeneous magnetism at the interface between a superconductor (S) and a ferromagnet (F). So far, reproducible long-range effects were reported only in complex layered structures designed to provide the magnetic inhomogeneity. Here we show that spin triplet pair formation can be found in simple unstructured Nb/Permalloy (Py = Ni_0.8Fe_0.2)/Nb trilayers and Nb/Py bilayers, but only when the thickness of the ferromagnetic layer ranges between 140 and 250 nm. The effect is related to the emergence of an intrinsically inhomogeneous magnetic state, which is a precursor of the well-known stripe regime in Py that in our samples sets in at thickness larger than 300 nm.
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ASK/PSK-correspondence and the r-map
We formulate a correspondence between affine and projective special Kähler manifolds of the same dimension. As an application, we show that, under this correspondence, the affine special Kähler manifolds in the image of the rigid r-map are mapped to one-parameter deformations of projective special Kähler manifolds in the image of the supergravity r-map. The above one-parameter deformations are interpreted as perturbative $\alpha'$-corrections in heterotic and type-II string compactifications with $N=2$ supersymmetry. Also affine special Kähler manifolds with quadratic prepotential are mapped to one-parameter families of projective special Kähler manifolds with quadratic prepotential. We show that the completeness of the deformed supergravity r-map metric depends solely on the (well-understood) completeness of the undeformed metric and the sign of the deformation parameter.
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Trust Region Value Optimization using Kalman Filtering
Policy evaluation is a key process in reinforcement learning. It assesses a given policy using estimation of the corresponding value function. When using a parameterized function to approximate the value, it is common to optimize the set of parameters by minimizing the sum of squared Bellman Temporal Differences errors. However, this approach ignores certain distributional properties of both the errors and value parameters. Taking these distributions into account in the optimization process can provide useful information on the amount of confidence in value estimation. In this work we propose to optimize the value by minimizing a regularized objective function which forms a trust region over its parameters. We present a novel optimization method, the Kalman Optimization for Value Approximation (KOVA), based on the Extended Kalman Filter. KOVA minimizes the regularized objective function by adopting a Bayesian perspective over both the value parameters and noisy observed returns. This distributional property provides information on parameter uncertainty in addition to value estimates. We provide theoretical results of our approach and analyze the performance of our proposed optimizer on domains with large state and action spaces.
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Simplified Long Short-term Memory Recurrent Neural Networks: part I
We present five variants of the standard Long Short-term Memory (LSTM) recurrent neural networks by uniformly reducing blocks of adaptive parameters in the gating mechanisms. For simplicity, we refer to these models as LSTM1, LSTM2, LSTM3, LSTM4, and LSTM5, respectively. Such parameter-reduced variants enable speeding up data training computations and would be more suitable for implementations onto constrained embedded platforms. We comparatively evaluate and verify our five variant models on the classical MNIST dataset and demonstrate that these variant models are comparable to a standard implementation of the LSTM model while using less number of parameters. Moreover, we observe that in some cases the standard LSTM's accuracy performance will drop after a number of epochs when using the ReLU nonlinearity; in contrast, however, LSTM3, LSTM4 and LSTM5 will retain their performance.
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Contracts as specifications for dynamical systems in driving variable form
This paper introduces assume/guarantee contracts on continuous-time control systems, hereby extending contract theories for discrete systems to certain new model classes and specifications. Contracts are regarded as formal characterizations of control specifications, providing an alternative to specifications in terms of dissipativity properties or set-invariance. The framework has the potential to capture a richer class of specifications more suitable for complex engineering systems. The proposed contracts are supported by results that enable the verification of contract implementation and the comparison of contracts. These results are illustrated by an example of a vehicle following system.
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Visualizing the Phase-Space Dynamics of an External Cavity Semiconductor Laser
We map the phase-space trajectories of an external-cavity semiconductor laser using phase portraits. This is both a visualization tool as well as a thoroughly quantitative approach enabling unprecedented insight into the dynamical regimes, from continuous-wave through coherence collapse as feedback is increased. Namely, the phase portraits in the intensity versus laser-diode terminal-voltage (serving as a surrogate for inversion) plane are mapped out. We observe a route to chaos interrupted by two types of limit cycles, a subharmonic regime and period-doubled dynamics at the edge of chaos. The transition of the dynamics are analyzed utilizing bifurcation diagrams for both the optical intensity and the laser-diode terminal voltage. These observations provide visual insight into the dynamics in these systems.
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On decision regions of narrow deep neural networks
We show that for neural network functions that have width less or equal to the input dimension all connected components of decision regions are unbounded. The result holds for continuous and strictly monotonic activation functions as well as for ReLU activation. This complements recent results on approximation capabilities of [Hanin 2017 Approximating] and connectivity of decision regions of [Nguyen 2018 Neural] for such narrow neural networks. Further, we give an example that negatively answers the question posed in [Nguyen 2018 Neural] whether one of their main results still holds for ReLU activation. Our results are illustrated by means of numerical experiments.
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An adelic arithmeticity theorem for lattices in products
We prove that, under mild assumptions, a lattice in a product of semi-simple Lie group and a totally disconnected locally compact group is, in a certain sense, arithmetic. We do not assume the lattice to be finitely generated or the ambient group to be compactly generated.
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Quadratic automaton algebras and intermediate growth
We present an example of a quadratic algebra given by three generators and three relations, which is automaton (the set of normal words forms a regular language) and such that its ideal of relations does not possess a finite Gröbner basis with respect to any choice of generators and any choice of a well-ordering of monomials compatible with multiplication. This answers a question of Ufnarovski. Another result is a simple example (4 generators and 7 relations) of a quadratic algebra of intermediate growth.
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Homotopy types of gauge groups related to $S^3$-bundles over $S^4$
Let $M_{l,m}$ be the total space of the $S^3$-bundle over $S^4$ classified by the element $l\sigma+m\rho\in{\pi_4(SO(4))}$, $l,m\in\mathbb Z$. In this paper we study the homotopy theory of gauge groups of principal $G$-bundles over manifolds $M_{l,m}$ when $G$ is a simply connected simple compact Lie group such that $\pi_6(G)=0$. That is, $G$ is one of the following groups: $SU(n)$ $(n\geq4)$, $Sp(n)$ $(n\geq2)$, $Spin(n)$ $(n\geq5)$, $F_4$, $E_6$, $E_7$, $E_8$. If the integral homology of $M_{l,m}$ is torsion-free, we describe the homotopy type of the gauge groups over $M_{l,m}$ as products of recognisable spaces. For any manifold $M_{l,m}$ with non-torsion-free homology, we give a $p$-local homotopy decomposition, for a prime $p\geq 5$, of the loop space of the gauge groups.
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Optical quality assurance of GEM foils
An analysis software was developed for the high aspect ratio optical scanning system in the Detec- tor Laboratory of the University of Helsinki and the Helsinki Institute of Physics. The system is used e.g. in the quality assurance of the GEM-TPC detectors being developed for the beam diagnostics system of the SuperFRS at future FAIR facility. The software was tested by analyzing five CERN standard GEM foils scanned with the optical scanning system. The measurement uncertainty of the diameter of the GEM holes and the pitch of the hole pattern was found to be 0.5 {\mu}m and 0.3 {\mu}m, respectively. The software design and the performance are discussed. The correlation between the GEM hole size distribution and the corresponding gain variation was studied by comparing them against a detailed gain mapping of a foil and a set of six lower precision control measurements. It can be seen that a qualitative estimation of the behavior of the local variation in gain across the GEM foil can be made based on the measured sizes of the outer and inner holes.
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On the Global Continuity of the Roots of Families of Monic Polynomials (in Russian)
We raise a question on the existence of continuous roots of families of monic polynomials (by the root of a family of polynomials we mean a function of the coefficients of polynomials of a given family that maps each tuple of coefficients to a root of the polynomial with these coefficients). We prove that the family of monic second-degree polynomials with complex coefficients and the families of monic fourth-degree and fifth-degree polynomials with real coefficients have no continuous root. We also prove that the family of monic second-degree polynomials with real coefficients has continuous roots and we describe the set of all such roots.
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On Number of Rich Words
Any finite word $w$ of length $n$ contains at most $n+1$ distinct palindromic factors. If the bound $n+1$ is reached, the word $w$ is called rich. The number of rich words of length $n$ over an alphabet of cardinality $q$ is denoted $R_n(q)$. For binary alphabet, Rubinchik and Shur deduced that ${R_n(2)}\leq c 1.605^n $ for some constant $c$. We prove that $\lim\limits_{n\rightarrow \infty }\sqrt[n]{R_n(q)}=1$ for any $q$, i.e. $R_n(q)$ has a subexponential growth on any alphabet.
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A Geometric Analysis of Power System Loadability Regions
Understanding the feasible power flow region is of central importance to power system analysis. In this paper, we propose a geometric view of the power system loadability problem. By using rectangular coordinates for complex voltages, we provide an integrated geometric understanding of active and reactive power flow equations on loadability boundaries. Based on such an understanding, we develop a linear programming framework to 1) verify if an operating point is on the loadability boundary, 2) compute the margin of an operating point to the loadability boundary, and 3) calculate a loadability boundary point of any direction. The proposed method is computationally more efficient than existing methods since it does not require solving nonlinear optimization problems or calculating the eigenvalues of the power flow Jacobian. Standard IEEE test cases demonstrate the capability of the new method compared to the current state-of-the-art methods.
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Model Selection Confidence Sets by Likelihood Ratio Testing
The traditional activity of model selection aims at discovering a single model superior to other candidate models. In the presence of pronounced noise, however, multiple models are often found to explain the same data equally well. To resolve this model selection ambiguity, we introduce the general approach of model selection confidence sets (MSCSs) based on likelihood ratio testing. A MSCS is defined as a list of models statistically indistinguishable from the true model at a user-specified level of confidence, which extends the familiar notion of confidence intervals to the model-selection framework. Our approach guarantees asymptotically correct coverage probability of the true model when both sample size and model dimension increase. We derive conditions under which the MSCS contains all the relevant information about the true model structure. In addition, we propose natural statistics based on the MSCS to measure importance of variables in a principled way that accounts for the overall model uncertainty. When the space of feasible models is large, MSCS is implemented by an adaptive stochastic search algorithm which samples MSCS models with high probability. The MSCS methodology is illustrated through numerical experiments on synthetic data and real data examples.
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Analysis of Dirichlet forms on graphs
In this thesis, we study connections between metric and combinatorial graphs from a Dirichlet space point of view.
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Designing and building the mlpack open-source machine learning library
mlpack is an open-source C++ machine learning library with an emphasis on speed and flexibility. Since its original inception in 2007, it has grown to be a large project implementing a wide variety of machine learning algorithms, from standard techniques such as decision trees and logistic regression to modern techniques such as deep neural networks as well as other recently-published cutting-edge techniques not found in any other library. mlpack is quite fast, with benchmarks showing mlpack outperforming other libraries' implementations of the same methods. mlpack has an active community, with contributors from around the world---including some from PUST. This short paper describes the goals and design of mlpack, discusses how the open-source community functions, and shows an example usage of mlpack for a simple data science problem.
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A Vietoris-Smale mapping theorem for the homotopy of hyperdefinable sets
Results of Smale (1957) and Dugundji (1969) allow to compare the homotopy groups of two topological spaces $X$ and $Y$ whenever a map $f:X\to Y$ with strong connectivity conditions on the fibers is given. We apply similar techniques in o-minimal expansions of fields to compare the o-minimal homotopy of a definable set $X$ with the homotopy of some of its bounded hyperdefinable quotients $X/E$. Under suitable assumption, we show that $\pi_{n}(X)^{\rm def}\cong\pi_{n}(X/E)$ and $\dim(X)=\dim_{\mathbb R}(X/E)$. As a special case, given a definably compact group, we obtain a new proof of Pillay's group conjecture "$\dim(G)=\dim_{\mathbb R}(G/G^{00}$)" largely independent of the group structure of $G$. We also obtain different proofs of various comparison results between classical and o-minimal homotopy.
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Characterization of multivariate Bernoulli distributions with given margins
We express each Fréchet class of multivariate Bernoulli distributions with given margins as the convex hull of a set of densities, which belong to the same Fréchet class. This characterisation allows us to establish whether a given correlation matrix is compatible with the assigned margins and, if it is, to easily construct one of the corresponding joint densities. % Such %representation is based on a polynomial expression of the distributions of a Fréchet class. We reduce the problem of finding a density belonging to a Fréchet class and with given correlation matrix to the solution of a linear system of equations. Our methodology also provides the bounds that each correlation must satisfy to be compatible with the assigned margins. An algorithm and its use in some examples is shown.
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Note on character varieties and cluster algebras
We use Bonahon-Wong's trace map to study character varieties of the once-punctured torus and of the 4-punctured sphere. We clarify a relationship with cluster algebra associated with ideal triangulations of surfaces, and we show that the Goldman Poisson algebra of loops on surfaces is recovered from the Poisson structure of cluster algebra. It is also shown that cluster mutations give the automorphism of the character varieties. Motivated by a work of Chekhov-Mazzocco-Rubtsov, we revisit confluences of punctures on sphere from cluster algebraic viewpoint, and we obtain associated affine cubic surfaces constructed by van der Put-Saito based on the Riemann-Hilbert correspondence. Further studied are quantizations of character varieties by use of quantum cluster algebra.
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Privacy-Preserving Multi-Period Demand Response: A Game Theoretic Approach
We study a multi-period demand response problem in the smart grid with multiple companies and their consumers. We model the interactions by a Stackelberg game, where companies are the leaders and consumers are the followers. It is shown that this game has a unique equilibrium at which the companies set prices to maximize their revenues while the consumers respond accordingly to maximize their utilities subject to their local constraints. Billing minimization is achieved as an outcome of our method. Closed-form expressions are provided for the strategies of all players. Based on these solutions, a power allocation game has been formulated, and which is shown to admit a unique pure-strategy Nash equilibrium, for which closed-form expressions are provided. For privacy, we provide a distributed algorithm for the computation of all strategies. We study the asymptotic behavior of equilibrium strategies when the numbers of periods and consumers grow. We find an appropriate company-to-user ratio for the large population regime. Furthermore, it is shown, both analytically and numerically, that the multi-period scheme, compared with the single-period one, provides more incentives for energy consumers to participate in demand response. We have also carried out case studies on real life data to demonstrate the benefits of our approach, including billing savings of up to 30\%.
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An ALMA survey of submillimetre galaxies in the COSMOS field: The extent of the radio-emitting region revealed by 3 GHz imaging with the Very Large Array
We determine the radio size distribution of a large sample of 152 SMGs in COSMOS that were detected with ALMA at 1.3 mm. For this purpose, we used the observations taken by the VLA-COSMOS 3 GHz Large Project. One hundred and fifteen of the 152 target SMGs were found to have a 3 GHz counterpart. The median value of the major axis FWHM at 3 GHz is derived to be $4.6\pm0.4$ kpc. The radio sizes show no evolutionary trend with redshift, or difference between different galaxy morphologies. We also derived the spectral indices between 1.4 and 3 GHz, and 3 GHz brightness temperatures for the sources, and the median values were found to be $\alpha=-0.67$ and $T_{\rm B}=12.6\pm2$ K. Three of the target SMGs, which are also detected with the VLBA, show clearly higher brightness temperatures than the typical values. Although the observed radio emission appears to be predominantly powered by star formation and supernova activity, our results provide a strong indication of the presence of an AGN in the VLBA and X-ray-detected SMG AzTEC/C61. The median radio-emitting size we have derived is 1.5-3 times larger than the typical FIR dust-emitting sizes of SMGs, but similar to that of the SMGs' molecular gas component traced through mid-$J$ line emission of CO. The physical conditions of SMGs probably render the diffusion of cosmic-ray electrons inefficient, and hence an unlikely process to lead to the observed extended radio sizes. Instead, our results point towards a scenario where SMGs are driven by galaxy interactions and mergers. Besides triggering vigorous starbursts, galaxy collisions can also pull out the magnetised fluids from the interacting disks, and give rise to a taffy-like synchrotron-emitting bridge. This provides an explanation for the spatially extended radio emission of SMGs, and can also cause a deviation from the well-known IR-radio correlation.
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Negative differential resistance and magnetoresistance in zigzag borophene nanoribbons
We investigate the transport properties of pristine zigzag-edged borophene nanoribbons (ZBNRs) of different widths, using the fist-principles calculations. We choose ZBNRs with widths of 5 and 6 as odd and even widths. The differences of the quantum transport properties are found, where even-N BNRs and odd-N BNRs have different current-voltage relationships. Moreover, the negative differential resistance (NDR) can be observed within certain bias range in 5-ZBNR, while 6-ZBNR behaves as metal whose current rises with the increase of the voltage. The spin filter effect of 36% can be revealed when the two electrodes have opposite magnetization direction. Furthermore, the magnetoresistance effect appears to be in even-N ZBNRs, and the maximum value can reach 70%.
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Incremental Eigenpair Computation for Graph Laplacian Matrices: Theory and Applications
The smallest eigenvalues and the associated eigenvectors (i.e., eigenpairs) of a graph Laplacian matrix have been widely used in spectral clustering and community detection. However, in real-life applications the number of clusters or communities (say, $K$) is generally unknown a-priori. Consequently, the majority of the existing methods either choose $K$ heuristically or they repeat the clustering method with different choices of $K$ and accept the best clustering result. The first option, more often, yields suboptimal result, while the second option is computationally expensive. In this work, we propose an incremental method for constructing the eigenspectrum of the graph Laplacian matrix. This method leverages the eigenstructure of graph Laplacian matrix to obtain the $K$-th smallest eigenpair of the Laplacian matrix given a collection of all previously computed $K-1$ smallest eigenpairs. Our proposed method adapts the Laplacian matrix such that the batch eigenvalue decomposition problem transforms into an efficient sequential leading eigenpair computation problem. As a practical application, we consider user-guided spectral clustering. Specifically, we demonstrate that users can utilize the proposed incremental method for effective eigenpair computation and for determining the desired number of clusters based on multiple clustering metrics.
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Audio-replay attack detection countermeasures
This paper presents the Speech Technology Center (STC) replay attack detection systems proposed for Automatic Speaker Verification Spoofing and Countermeasures Challenge 2017. In this study we focused on comparison of different spoofing detection approaches. These were GMM based methods, high level features extraction with simple classifier and deep learning frameworks. Experiments performed on the development and evaluation parts of the challenge dataset demonstrated stable efficiency of deep learning approaches in case of changing acoustic conditions. At the same time SVM classifier with high level features provided a substantial input in the efficiency of the resulting STC systems according to the fusion systems results.
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Joint Scheduling and Transmission Power Control in Wireless Ad Hoc Networks
In this paper, we study how to determine concurrent transmissions and the transmission power level of each link to maximize spectrum efficiency and minimize energy consumption in a wireless ad hoc network. The optimal joint transmission packet scheduling and power control strategy are determined when the node density goes to infinity and the network area is unbounded. Based on the asymptotic analysis, we determine the fundamental capacity limits of a wireless network, subject to an energy consumption constraint. We propose a scheduling and transmission power control mechanism to approach the optimal solution to maximize spectrum and energy efficiencies in a practical network. The distributed implementation of the proposed scheduling and transmission power control scheme is presented based on our MAC framework proposed in [1]. Simulation results demonstrate that the proposed scheme achieves 40% higher throughput than existing schemes. Also, the energy consumption using the proposed scheme is about 20% of the energy consumed using existing power saving MAC protocols.
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Proceedings 15th International Conference on Automata and Formal Languages
The 15th International Conference on Automata and Formal Languages (AFL 2017) was held in Debrecen, Hungary, from September 4 to 6, 2017. The conference was organized by the Faculty of Informatics of the University of Debrecen and the Faculty of Informatics of the Eötvös Loránd University of Budapest. Topics of interest covered all aspects of automata and formal languages, including theory and applications.
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Correlative cellular ptychography with functionalized nanoparticles at the Fe L-edge
Precise localization of nanoparticles within a cell is crucial to the understanding of cell-particle interactions and has broad applications in nanomedicine. Here, we report a proof-of-principle experiment for imaging individual functionalized nanoparticles within a mammalian cell by correlative microscopy. Using a chemically-fixed, HeLa cell labeled with fluorescent core-shell nanoparticles as a model system, we implemented a graphene-oxide layer as a substrate to significantly reduce background scattering. We identified cellular features of interest by fluorescence microscopy, followed by scanning transmission X-ray tomography to localize the particles in 3D, and ptychographic coherent diffractive imaging of the fine features in the region at high resolution. By tuning the X-ray energy to the Fe L-edge, we demonstrated sensitive detection of nanoparticles composed of a 22 nm magnetic Fe3O4 core encased by a 25-nm-thick fluorescent silica (SiO2) shell. These fluorescent core-shell nanoparticles act as landmarks and offer clarity in a cellular context. Our correlative microscopy results confirmed a subset of particles to be fully internalized, and high-contrast ptychographic images showed two oxidation states of individual nanoparticles with a resolution of ~16.5 nm. The ability to precisely localize individual fluorescent nanoparticles within mammalian cells will expand our understanding of the structure/function relationships for functionalized nanoparticles.
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A Dynamic-Adversarial Mining Approach to the Security of Machine Learning
Operating in a dynamic real world environment requires a forward thinking and adversarial aware design for classifiers, beyond fitting the model to the training data. In such scenarios, it is necessary to make classifiers - a) harder to evade, b) easier to detect changes in the data distribution over time, and c) be able to retrain and recover from model degradation. While most works in the security of machine learning has concentrated on the evasion resistance (a) problem, there is little work in the areas of reacting to attacks (b and c). Additionally, while streaming data research concentrates on the ability to react to changes to the data distribution, they often take an adversarial agnostic view of the security problem. This makes them vulnerable to adversarial activity, which is aimed towards evading the concept drift detection mechanism itself. In this paper, we analyze the security of machine learning, from a dynamic and adversarial aware perspective. The existing techniques of Restrictive one class classifier models, Complex learning models and Randomization based ensembles, are shown to be myopic as they approach security as a static task. These methodologies are ill suited for a dynamic environment, as they leak excessive information to an adversary, who can subsequently launch attacks which are indistinguishable from the benign data. Based on empirical vulnerability analysis against a sophisticated adversary, a novel feature importance hiding approach for classifier design, is proposed. The proposed design ensures that future attacks on classifiers can be detected and recovered from. The proposed work presents motivation, by serving as a blueprint, for future work in the area of Dynamic-Adversarial mining, which combines lessons learned from Streaming data mining, Adversarial learning and Cybersecurity.
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Software stage-effort estimation based on association rule mining and fuzzy set theory
Relaying on early effort estimation to predict the required number of resources is not often sufficient, and could lead to under or over estimation. It is widely acknowledge that that software development process should be refined regularly and that software prediction made at early stage of software development is yet kind of guesses. Even good predictions are not sufficient with inherent uncertainty and risks. The stage-effort estimation allows project manager to re-allocate correct number of resources, re-schedule project and control project progress to finish on time and within budget. In this paper we propose an approach to utilize prior effort records to predict stage effort. The proposed model combines concepts of Fuzzy set theory and association rule mining. The results were good in terms of prediction accuracy and have potential to deliver good stage-effort estimation.
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Phase Transitions in Approximate Ranking
We study the problem of approximate ranking from observations of pairwise interactions. The goal is to estimate the underlying ranks of $n$ objects from data through interactions of comparison or collaboration. Under a general framework of approximate ranking models, we characterize the exact optimal statistical error rates of estimating the underlying ranks. We discover important phase transition boundaries of the optimal error rates. Depending on the value of the signal-to-noise ratio (SNR) parameter, the optimal rate, as a function of SNR, is either trivial, polynomial, exponential or zero. The four corresponding regimes thus have completely different error behaviors. To the best of our knowledge, this phenomenon, especially the phase transition between the polynomial and the exponential rates, has not been discovered before.
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Finding Influential Training Samples for Gradient Boosted Decision Trees
We address the problem of finding influential training samples for a particular case of tree ensemble-based models, e.g., Random Forest (RF) or Gradient Boosted Decision Trees (GBDT). A natural way of formalizing this problem is studying how the model's predictions change upon leave-one-out retraining, leaving out each individual training sample. Recent work has shown that, for parametric models, this analysis can be conducted in a computationally efficient way. We propose several ways of extending this framework to non-parametric GBDT ensembles under the assumption that tree structures remain fixed. Furthermore, we introduce a general scheme of obtaining further approximations to our method that balance the trade-off between performance and computational complexity. We evaluate our approaches on various experimental setups and use-case scenarios and demonstrate both the quality of our approach to finding influential training samples in comparison to the baselines and its computational efficiency.
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Vulnerability and co-susceptibility determine the size of network cascades
In a network, a local disturbance can propagate and eventually cause a substantial part of the system to fail, in cascade events that are easy to conceptualize but extraordinarily difficult to predict. Here, we develop a statistical framework that can predict cascade size distributions by incorporating two ingredients only: the vulnerability of individual components and the co-susceptibility of groups of components (i.e., their tendency to fail together). Using cascades in power grids as a representative example, we show that correlations between component failures define structured and often surprisingly large groups of co-susceptible components. Aside from their implications for blackout studies, these results provide insights and a new modeling framework for understanding cascades in financial systems, food webs, and complex networks in general.
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Transfer learning for music classification and regression tasks
In this paper, we present a transfer learning approach for music classification and regression tasks. We propose to use a pre-trained convnet feature, a concatenated feature vector using the activations of feature maps of multiple layers in a trained convolutional network. We show how this convnet feature can serve as general-purpose music representation. In the experiments, a convnet is trained for music tagging and then transferred to other music-related classification and regression tasks. The convnet feature outperforms the baseline MFCC feature in all the considered tasks and several previous approaches that are aggregating MFCCs as well as low- and high-level music features.
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Dynamic Transition in Symbiotic Evolution Induced by Growth Rate Variation
In a standard bifurcation of a dynamical system, the stationary points (or more generally attractors) change qualitatively when varying a control parameter. Here we describe a novel unusual effect, when the change of a parameter, e.g. a growth rate, does not influence the stationary states, but nevertheless leads to a qualitative change of dynamics. For instance, such a dynamic transition can be between the convergence to a stationary state and a strong increase without stationary states, or between the convergence to one stationary state and that to a different state. This effect is illustrated for a dynamical system describing two symbiotic populations, one of which exhibits a growth rate larger than the other one. We show that, although the stationary states of the dynamical system do not depend on the growth rates, the latter influence the boundary of the basins of attraction. This change of the basins of attraction explains this unusual effect of the quantitative change of dynamics by growth rate variation.
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Scale-invariant magnetoresistance in a cuprate superconductor
The anomalous metallic state in high-temperature superconducting cuprates is masked by the onset of superconductivity near a quantum critical point. Use of high magnetic fields to suppress superconductivity has enabled a detailed study of the ground state in these systems. Yet, the direct effect of strong magnetic fields on the metallic behavior at low temperatures is poorly understood, especially near critical doping, $x=0.19$. Here we report a high-field magnetoresistance study of thin films of \LSCO cuprates in close vicinity to critical doping, $0.161\leq x\leq0.190$. We find that the metallic state exposed by suppressing superconductivity is characterized by a magnetoresistance that is linear in magnetic field up to the highest measured fields of $80$T. The slope of the linear-in-field resistivity is temperature-independent at very high fields. It mirrors the magnitude and doping evolution of the linear-in-temperature resistivity that has been ascribed to Planckian dissipation near a quantum critical point. This establishes true scale-invariant conductivity as the signature of the strange metal state in the high-temperature superconducting cuprates.
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Thermoelectric Devices: Principles and Future Trends
The principles of the thermoelectric phenomenon, including Seebeck effect, Peltier effect, and Thomson effect are discussed. The dependence of the thermoelectric devices on the figure of merit, Seebeck coefficient, electrical conductivity, and thermal conductivity are explained in details. The paper provides an overview of the different types of thermoelectric materials, explains the techniques used to grow thin films for these materials, and discusses future research and development trends for this technology.
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Exploring one particle orbitals in large Many-Body Localized systems
Strong disorder in interacting quantum systems can give rise to the phenomenon of Many-Body Localization (MBL), which defies thermalization due to the formation of an extensive number of quasi local integrals of motion. The one particle operator content of these integrals of motion is related to the one particle orbitals of the one particle density matrix and shows a strong signature across the MBL transition as recently pointed out by Bera et al. [Phys. Rev. Lett. 115, 046603 (2015); Ann. Phys. 529, 1600356 (2017)]. We study the properties of the one particle orbitals of many-body eigenstates of an MBL system in one dimension. Using shift-and-invert MPS (SIMPS), a matrix product state method to target highly excited many-body eigenstates introduced in [Phys. Rev. Lett. 118, 017201 (2017)], we are able to obtain accurate results for large systems of sizes up to L = 64. We find that the one particle orbitals drawn from eigenstates at different energy densities have high overlap and their occupations are correlated with the energy of the eigenstates. Moreover, the standard deviation of the inverse participation ratio of these orbitals is maximal at the nose of the mobility edge. Also, the one particle orbitals decay exponentially in real space, with a correlation length that increases at low disorder. In addition, we find a 1/f distribution of the coupling constants of a certain range of the number operators of the OPOs, which is related to their exponential decay.
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On transient waves in linear viscoelasticity
The aim of this paper is to present a comprehensive review of method of the wave-front expansion, also known in the literature as the Buchen-Mainardi algorithm. In particular, many applications of this technique to the fundamental models of both ordinary and fractional linear viscoelasticity are thoroughly presented and discussed.
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Detection of an Optical Counterpart to the ALFALFA Ultra-compact High Velocity Cloud AGC 249525
We report on the detection at $>$98% confidence of an optical counterpart to AGC 249525, an Ultra-Compact High Velocity Cloud (UCHVC) discovered by the ALFALFA blind neutral hydrogen survey. UCHVCs are compact, isolated HI clouds with properties consistent with their being nearby low-mass galaxies, but without identified counterparts in extant optical surveys. Analysis of the resolved stellar sources in deep $g$- and $i$-band imaging from the WIYN pODI camera reveals a clustering of possible Red Giant Branch stars associated with AGC 249525 at a distance of 1.64$\pm$0.45 Mpc. Matching our optical detection with the HI synthesis map of AGC 249525 from Adams et al. (2016) shows that the stellar overdensity is exactly coincident with the highest-density HI contour from that study. Combining our optical photometry and the HI properties of this object yields an absolute magnitude of $-7.1 \leq M_V \leq -4.5$, a stellar mass between $2.2\pm0.6\times10^4 M_{\odot}$ and $3.6\pm1.0\times10^5 M_{\odot}$, and an HI to stellar mass ratio between 9 and 144. This object has stellar properties within the observed range of gas-poor Ultra-Faint Dwarfs in the Local Group, but is gas-dominated.
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Boosting the power factor with resonant states: a model study
A particularly promising pathway to enhance the efficiency of thermoelectric materials lies in the use of resonant states, as suggested by experimentalists and theorists alike. In this paper, we go over the mechanisms used in the literature to explain how resonant levels affect the thermoelectric properties, and we suggest that the effects of hybridization are crucial yet ill-understood. In order to get a good grasp of the physical picture and to draw guidelines for thermoelectric enhancement, we use a tight-binding model containing a conduction band hybridized with a flat band. We find that the conductivity is suppressed in a wide energy range near the resonance, but that the Seebeck coefficient can be boosted for strong enough hybridization, thus allowing for a significant increase of the power factor. The Seebeck coefficient can also display a sign change as the Fermi level crosses the resonance. Our results suggest that in order to boost the power factor, the hybridization strength must not be too low, the resonant level must not be too close to the conduction (or valence) band edge, and the Fermi level must be located around, but not inside, the resonant peak.
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Activation cross-section data for alpha-particle induced nuclear reactions on natural ytterbium for some longer lived radioisotopes
Additional experimental cross sections were deduced for the long half-life activation products (172Hf and 173Lu) from the alpha particle induced reactions on ytterbium up to 38 MeV from late, long measurements and for 175Yb, 167Tm from a re-evaluation of earlier measured spectra. The cross-sections are compared with the earlier experimental datasets and with the data based on the TALYS theoretical nuclear reaction model (available in the TENDL-2014 and 2015 libraries) and the ALICE-IPPE code.
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Congestion-Aware Distributed Network Selection for Integrated Cellular and Wi-Fi Networks
Intelligent network selection plays an important role in achieving an effective data offloading in the integrated cellular and Wi-Fi networks. However, previously proposed network selection schemes mainly focused on offloading as much data traffic to Wi-Fi as possible, without systematically considering the Wi-Fi network congestion and the ping-pong effect, both of which may lead to a poor overall user quality of experience. Thus, in this paper, we study a more practical network selection problem by considering both the impacts of the network congestion and switching penalties. More specifically, we formulate the users' interactions as a Bayesian network selection game (NSG) under the incomplete information of the users' mobilities. We prove that it is a Bayesian potential game and show the existence of a pure Bayesian Nash equilibrium that can be easily reached. We then propose a distributed network selection (DNS) algorithm based on the network congestion statistics obtained from the operator. Furthermore, we show that computing the optimal centralized network allocation is an NP-hard problem, which further justifies our distributed approach. Simulation results show that the DNS algorithm achieves the highest user utility and a good fairness among users, as compared with the on-the-spot offloading and cellular-only benchmark schemes.
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Deep Learning Based Large-Scale Automatic Satellite Crosswalk Classification
High-resolution satellite imagery have been increasingly used on remote sensing classification problems. One of the main factors is the availability of this kind of data. Even though, very little effort has been placed on the zebra crossing classification problem. In this letter, crowdsourcing systems are exploited in order to enable the automatic acquisition and annotation of a large-scale satellite imagery database for crosswalks related tasks. Then, this dataset is used to train deep-learning-based models in order to accurately classify satellite images that contains or not zebra crossings. A novel dataset with more than 240,000 images from 3 continents, 9 countries and more than 20 cities was used in the experiments. Experimental results showed that freely available crowdsourcing data can be used to accurately (97.11%) train robust models to perform crosswalk classification on a global scale.
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Complexity of the Regularized Newton Method
Newton's method for finding an unconstrained minimizer for strictly convex functions, generally speaking, does not converge from any starting point. We introduce and study the damped regularized Newton's method (DRNM). It converges globally for any strictly convex function, which has a minimizer in $R^n$. Locally DRNM converges with a quadratic rate. We characterize the neighborhood of the minimizer, where the quadratic rate occurs. Based on it we estimate the number of DRNM's steps required for finding an $\varepsilon$- approximation for the minimizer.
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Quantifying Program Bias
With the range and sensitivity of algorithmic decisions expanding at a break-neck speed, it is imperative that we aggressively investigate whether programs are biased. We propose a novel probabilistic program analysis technique and apply it to quantifying bias in decision-making programs. Specifically, we (i) present a sound and complete automated verification technique for proving quantitative properties of probabilistic programs; (ii) show that certain notions of bias, recently proposed in the fairness literature, can be phrased as quantitative correctness properties; and (iii) present FairSquare, the first verification tool for quantifying program bias, and evaluate it on a range of decision-making programs.
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A Theory of Exoplanet Transits with Light Scattering
Exoplanet transit spectroscopy enables the characterization of distant worlds, and will yield key results for NASA's James Webb Space Telescope. However, transit spectra models are often simplified, omitting potentially important processes like refraction and multiple scattering. While the former process has seen recent development, the effects of light multiple scattering on exoplanet transit spectra has received little attention. Here, we develop a detailed theory of exoplanet transit spectroscopy that extends to the full refracting and multiple scattering case. We explore the importance of scattering for planet-wide cloud layers, where the relevant parameters are the slant scattering optical depth, the scattering asymmetry parameter, and the angular size of the host star. The latter determines the size of the "target" for a photon that is back-mapped from an observer. We provide results that straightforwardly indicate the potential importance of multiple scattering for transit spectra. When the orbital distance is smaller than 10-20 times the stellar radius, multiple scattering effects for aerosols with asymmetry parameters larger than 0.8-0.9 can become significant. We provide examples of the impacts of cloud/haze multiple scattering on transit spectra of a hot Jupiter-like exoplanet. For cases with a forward and conservatively scattering cloud/haze, differences due to multiple scattering effects can exceed 200 ppm, but shrink to zero at wavelength ranges corresponding to strong gas absorption or when the slant optical depth of the cloud exceeds several tens. We conclude with a discussion of types of aerosols for which multiple scattering in transit spectra may be important.
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Tuning Majorana zero modes with temperature in $π$-phase Josephson junctions
We study a superconductor-normal state-superconductor (SNS) Josephson junction along the edge of a quantum spin Hall insulator (QSHI) with a superconducting $\pi$-phase across the junction. We solve self-consistently for the superconducting order parameter and find both real junctions, where the order parameter is fully real throughout the system, and junctions where the order parameter has a complex phase winding. Real junctions host two Majorana zero modes (MZMs), while phase-winding junctions have no subgap states close to zero energy. At zero temperature we find that the phase-winding solution always has the lowest free energy, which we establish being due to a strong proximity-effect into the N region. With increasing temperature this proximity-effect is dramatically decreased and we find a phase transition into a real junction with two MZMs.
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A repulsive skyrmion chain as guiding track for a race track memory
A skyrmion racetrack design is proposed that allows for thermally stable skyrmions to code information and dynamical pinning sites that move with the applied current. This concept solves the problem of intrinsic distributions of pinning times and pinning currents of skyrmions at static geometrical or magnetic pinning sites. The dynamical pinning sites are realized by a skyrmion carrying wire, where the skyrmion repulsion is used in order to keep the skyrmions at equal distances. The information is coded by an additional layer where the presence and absence of a skyrmion is used to code the information. The lowest energy barrier for a data loss is calculated to be DE = 55 kBT300 which is sufficient for long time thermal stability.
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Compressive Sensing-Based Detection with Multimodal Dependent Data
Detection with high dimensional multimodal data is a challenging problem when there are complex inter- and intra- modal dependencies. While several approaches have been proposed for dependent data fusion (e.g., based on copula theory), their advantages come at a high price in terms of computational complexity. In this paper, we treat the detection problem with compressive sensing (CS) where compression at each sensor is achieved via low dimensional random projections. CS has recently been exploited to solve detection problems under various assumptions on the signals of interest, however, its potential for dependent data fusion has not been explored adequately. We exploit the capability of CS to capture statistical properties of uncompressed data in order to compute decision statistics for detection in the compressed domain. First, a Gaussian approximation is employed to perform likelihood ratio (LR) based detection with compressed data. In this approach, inter-modal dependence is captured via a compressed version of the covariance matrix of the concatenated (temporally and spatially) uncompressed data vector. We show that, under certain conditions, this approach with a small number of compressed measurements per node leads to enhanced performance compared to detection with uncompressed data using widely considered suboptimal approaches. Second, we develop a nonparametric approach where a decision statistic based on the second order statistics of uncompressed data is computed in the compressed domain. The second approach is promising over other related nonparametric approaches and the first approach when multimodal data is highly correlated at the expense of slightly increased computational complexity.
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Factors in Recommending Contrarian Content on Social Media
Polarization is a troubling phenomenon that can lead to societal divisions and hurt the democratic process. It is therefore important to develop methods to reduce it. We propose an algorithmic solution to the problem of reducing polarization. The core idea is to expose users to content that challenges their point of view, with the hope broadening their perspective, and thus reduce their polarity. Our method takes into account several aspects of the problem, such as the estimated polarity of the user, the probability of accepting the recommendation, the polarity of the content, and popularity of the content being recommended. We evaluate our recommendations via a large-scale user study on Twitter users that were actively involved in the discussion of the US elections results. Results shows that, in most cases, the factors taken into account in the recommendation affect the users as expected, and thus capture the essential features of the problem.
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Generating the Log Law of the Wall with Superposition of Standing Waves
Turbulence remains an unsolved multidisciplinary science problem. As one of the most well-known examples in turbulent flows, knowledge of the logarithmic mean velocity profile (MVP), so called the log law of the wall, plays an important role everywhere turbulent flow meets the solid wall, such as fluids in any kind of channels, skin friction of all types of transportations, the atmospheric wind on a planetary ground, and the oceanic current on the seabed. However, the mechanism of how this log-law MVP is formed under the multiscale nature of turbulent shears remains one of the greatest interests of turbulence puzzles. To untangle the multiscale coupling of turbulent shear stresses, we explore for a known fundamental tool in physics. Here we present how to reproduce the log-law MVP with the even harmonic modes of fixed-end standing waves. We find that when these harmonic waves of same magnitude are considered as the multiscale turbulent shear stresses, the wave envelope of their superposition simulates the mean shear stress profile of the wall-bounded flow. It implies that the log-law MVP is not expectedly related to the turbulent scales in the inertial subrange associated with the Kolmogorov energy cascade, revealing the dissipative nature of all scales involved. The MVP with reduced harmonic modes also shows promising connection to the understanding of flow transition to turbulence. The finding here suggests the simple harmonic waves as good agents to help unravel the complex turbulent dynamics in wall-bounded flow.
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Adaptive p-value weighting with power optimality
Weighting the p-values is a well-established strategy that improves the power of multiple testing procedures while dealing with heterogeneous data. However, how to achieve this task in an optimal way is rarely considered in the literature. This paper contributes to fill the gap in the case of group-structured null hypotheses, by introducing a new class of procedures named ADDOW (for Adaptive Data Driven Optimal Weighting) that adapts both to the alternative distribution and to the proportion of true null hypotheses. We prove the asymptotical FDR control and power optimality among all weighted procedures of ADDOW, which shows that it dominates all existing procedures in that framework. Some numerical experiments show that the proposed method preserves its optimal properties in the finite sample setting when the number of tests is moderately large.
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Topical homophily in online social systems
Understanding the dynamics of social interactions is crucial to comprehend human behavior. The emergence of online social media has enabled access to data regarding people relationships at a large scale. Twitter, specifically, is an information oriented network, with users sharing and consuming information. In this work, we study whether users tend to be in contact with people interested in similar topics, i.e., topical homophily. To do so, we propose an approach based on the use of hashtags to extract information topics from Twitter messages and model users' interests. Our results show that, on average, users are connected with other users similar to them and stronger relationships are due to a higher topical similarity. Furthermore, we show that topical homophily provides interesting information that can eventually allow inferring users' connectivity. Our work, besides providing a way to assess the topical similarity of users, quantifies topical homophily among individuals, contributing to a better understanding of how complex social systems are structured.
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Perceptual Context in Cognitive Hierarchies
Cognition does not only depend on bottom-up sensor feature abstraction, but also relies on contextual information being passed top-down. Context is higher level information that helps to predict belief states at lower levels. The main contribution of this paper is to provide a formalisation of perceptual context and its integration into a new process model for cognitive hierarchies. Several simple instantiations of a cognitive hierarchy are used to illustrate the role of context. Notably, we demonstrate the use context in a novel approach to visually track the pose of rigid objects with just a 2D camera.
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Coherence for braided and symmetric pseudomonoids
Presentations for unbraided, braided and symmetric pseudomonoids are defined. Biequivalences characterising the semistrict bicategories generated by these presentations are proven. It is shown that these biequivalences categorify results in the theory of monoids and commutative monoids, and generalise standard coherence theorems for braided and symmetric monoidal categories.
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Linear Optimal Power Flow Using Cycle Flows
Linear optimal power flow (LOPF) algorithms use a linearization of the alternating current (AC) load flow equations to optimize generator dispatch in a network subject to the loading constraints of the network branches. Common algorithms use the voltage angles at the buses as optimization variables, but alternatives can be computationally advantageous. In this article we provide a review of existing methods and describe a new formulation that expresses the loading constraints directly in terms of the flows themselves, using a decomposition of the network graph into a spanning tree and closed cycles. We provide a comprehensive study of the computational performance of the various formulations, in settings that include computationally challenging applications such as multi-period LOPF with storage dispatch and generation capacity expansion. We show that the new formulation of the LOPF solves up to 7 times faster than the angle formulation using a commercial linear programming solver, while another existing cycle-based formulation solves up to 20 times faster, with an average speed-up of factor 3 for the standard networks considered here. If generation capacities are also optimized, the average speed-up rises to a factor of 12, reaching up to factor 213 in a particular instance. The speed-up is largest for networks with many buses and decentral generators throughout the network, which is highly relevant given the rise of distributed renewable generation and the computational challenge of operation and planning in such networks.
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Toward construction of a consistent field theory with Poincare covariance in terms of step-function-type basis functions showing confinement/deconfinement, mass-gap and Regge trajectory for non-pure/pure non-Abelian gauge fields
This article is a review by the authors concerning the construction of a Poincar${\rm \acute{e}}$ covariant (owing to spacetime continuum) field-theoretic formalism in terms of step-function-type basis functions without ultraviolet divergences. This formalism analytically derives confinement/deconfinement, mass-gap and Regge trajectory for non-Abelian gauge fields, and gives solutions for self-interacting scalar fields. Fields propagate in spacetime continuum and fields with finite degrees of freedom toward continuum limit have no ultraviolet divergence. Basis functions defined in a parameter spacetime are mapped to real spacetime. The authors derive a new solution comprised of classical fields as a vacuum and quantum fluctuations, leading to the linear potential between the particle and antiparticle from the Wilson loop. The Polyakov line gives finite binding energies and reveals the deconfining property at high temperatures. The quantum action yields positive mass from the classical fields and quantum fluctuations produces the Coulomb potential. Pure Yang-Mills fields show the same mass-gap owing to the particle-antiparticle pair creation. The Dirac equation under linear potential is analytically solved in this formalism, reproducing the principal properties of Regge trajectories at a quantum level. Further outlook mentions a possibility of the difference between conventional continuum and present wave functions responsible for the cosmological constant.
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The Exact Solution to Rank-1 L1-norm TUCKER2 Decomposition
We study rank-1 {L1-norm-based TUCKER2} (L1-TUCKER2) decomposition of 3-way tensors, treated as a collection of $N$ $D \times M$ matrices that are to be jointly decomposed. Our contributions are as follows. i) We prove that the problem is equivalent to combinatorial optimization over $N$ antipodal-binary variables. ii) We derive the first two algorithms in the literature for its exact solution. The first algorithm has cost exponential in $N$; the second one has cost polynomial in $N$ (under a mild assumption). Our algorithms are accompanied by formal complexity analysis. iii) We conduct numerical studies to compare the performance of exact L1-TUCKER2 (proposed) with standard HOSVD, HOOI, GLRAM, PCA, L1-PCA, and TPCA-L1. Our studies show that L1-TUCKER2 outperforms (in tensor approximation) all the above counterparts when the processed data are outlier corrupted.
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A Statistical Comparative Planetology Approach to the Hunt for Habitable Exoplanets and Life Beyond the Solar System
The search for habitable exoplanets and life beyond the Solar System is one of the most compelling scientific opportunities of our time. Nevertheless, the high cost of building facilities that can address this topic and the keen public interest in the results of such research requires the rigorous development of experiments that can deliver a definitive advance in our understanding. Most work to date in this area has focused on a "systems science" approach of obtaining and interpreting comprehensive data for individual planets to make statements about their habitability and the possibility that they harbor life. This strategy is challenging because of the diversity of exoplanets, both observed and expected, and the limited information that can be obtained with astronomical instruments. Here we propose a complementary approach that is based on performing surveys of key planetary characteristics and using statistical marginalization to answer broader questions than can be addressed with a small sample of objects. The fundamental principle of this comparative planetology approach is maximizing what can be learned from each type of measurement by applying it widely rather than requiring that multiple kinds of observations be brought to bear on a single object. As a proof of concept, we outline a survey of terrestrial exoplanet atmospheric water and carbon dioxide abundances that would test the habitable zone hypothesis and lead to a deeper understanding of the frequency of habitable planets. We also discuss ideas for additional surveys that could be developed to test other foundational hypotheses is this area.
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Fast Generation for Convolutional Autoregressive Models
Convolutional autoregressive models have recently demonstrated state-of-the-art performance on a number of generation tasks. While fast, parallel training methods have been crucial for their success, generation is typically implemented in a naïve fashion where redundant computations are unnecessarily repeated. This results in slow generation, making such models infeasible for production environments. In this work, we describe a method to speed up generation in convolutional autoregressive models. The key idea is to cache hidden states to avoid redundant computation. We apply our fast generation method to the Wavenet and PixelCNN++ models and achieve up to $21\times$ and $183\times$ speedups respectively.
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Variable domain N-linked glycosylation and negative surface charge are key features of monoclonal ACPA: implications for B-cell selection
Autoreactive B cells have a central role in the pathogenesis of rheumatoid arthritis (RA), and recent findings have proposed that anti-citrullinated protein autoantibodies (ACPA) may be directly pathogenic. Herein, we demonstrate the frequency of variable-region glycosylation in single-cell cloned mAbs. A total of 14 ACPA mAbs were evaluated for predicted N-linked glycosylation motifs in silico and compared to 452 highly-mutated mAbs from RA patients and controls. Variable region N-linked motifs (N-X-S/T) were strikingly prevalent within ACPA (100%) compared to somatically hypermutated (SHM) RA bone marrow plasma cells (21%), and synovial plasma cells from seropositive (39%) and seronegative RA (7%). When normalized for SHM, ACPA still had significantly higher frequency of N-linked motifs compared to all studied mAbs including highly-mutated HIV broadly-neutralizing and malaria-associated mAbs. The Fab glycans of ACPA-mAbs were highly sialylated, contributed to altered charge, but did not influence antigen binding. The analysis revealed evidence of unusual B-cell selection pressure and SHM-mediated decreased in surface charge and isoelectric point in ACPA. It is still unknown how these distinct features of anti-citrulline immunity may have an impact on pathogenesis. However, it is evident that they offer selective advantages for ACPA+ B cells, possibly also through non-antigen driven mechanisms.
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Periodic Airy process and equilibrium dynamics of edge fermions in a trap
We establish an exact mapping between (i) the equilibrium (imaginary time) dynamics of non-interacting fermions trapped in a harmonic potential at temperature $T=1/\beta$ and (ii) non-intersecting Ornstein-Uhlenbeck (OU) particles constrained to return to their initial positions after time $\beta$. Exploiting the determinantal structure of the process we compute the universal correlation functions both in the bulk and at the edge of the trapped Fermi gas. The latter corresponds to the top path of the non-intersecting OU particles, and leads us to introduce and study the time-periodic Airy$_2$ process, ${\cal A}^b_2(u)$, depending on a single parameter, the period $b$. The standard Airy$_2$ process is recovered for $b=+\infty$. We discuss applications of our results to the real time quantum dynamics of trapped fermions.
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Quantum machine learning: a classical perspective
Recently, increased computational power and data availability, as well as algorithmic advances, have led machine learning techniques to impressive results in regression, classification, data-generation and reinforcement learning tasks. Despite these successes, the proximity to the physical limits of chip fabrication alongside the increasing size of datasets are motivating a growing number of researchers to explore the possibility of harnessing the power of quantum computation to speed-up classical machine learning algorithms. Here we review the literature in quantum machine learning and discuss perspectives for a mixed readership of classical machine learning and quantum computation experts. Particular emphasis will be placed on clarifying the limitations of quantum algorithms, how they compare with their best classical counterparts and why quantum resources are expected to provide advantages for learning problems. Learning in the presence of noise and certain computationally hard problems in machine learning are identified as promising directions for the field. Practical questions, like how to upload classical data into quantum form, will also be addressed.
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Robot Assisted Tower Construction - A Resource Distribution Task to Study Human-Robot Collaboration and Interaction with Groups of People
Research on human-robot collaboration or human-robot teaming, has focused predominantly on understanding and enabling collaboration between a single robot and a single human. Extending human-robot collaboration research beyond the dyad, raises novel questions about how a robot should distribute resources among group members and about what the social and task related consequences of the distribution are. Methodological advances are needed to allow researchers to collect data about human robot collaboration that involves multiple people. This paper presents Tower Construction, a novel resource distribution task that allows researchers to examine collaboration between a robot and groups of people. By focusing on the question of whether and how a robot's distribution of resources (wooden blocks required for a building task) affects collaboration dynamics and outcomes, we provide a case of how this task can be applied in a laboratory study with 124 participants to collect data about human robot collaboration that involves multiple humans. We highlight the kinds of insights the task can yield. In particular we find that the distribution of resources affects perceptions of performance, and interpersonal dynamics between human team-members.
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Counterexample Guided Inductive Optimization
This paper describes three variants of a counterexample guided inductive optimization (CEGIO) approach based on Satisfiability Modulo Theories (SMT) solvers. In particular, CEGIO relies on iterative executions to constrain a verification procedure, in order to perform inductive generalization, based on counterexamples extracted from SMT solvers. CEGIO is able to successfully optimize a wide range of functions, including non-linear and non-convex optimization problems based on SMT solvers, in which data provided by counterexamples are employed to guide the verification engine, thus reducing the optimization domain. The present algorithms are evaluated using a large set of benchmarks typically employed for evaluating optimization techniques. Experimental results show the efficiency and effectiveness of the proposed algorithms, which find the optimal solution in all evaluated benchmarks, while traditional techniques are usually trapped by local minima.
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Bounds for the difference between two Čebyšev functionals
In this work, a generalization of pre-Grüss inequality is established. Several bounds for the difference between two Čebyšev functional are proved.
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Converting Your Thoughts to Texts: Enabling Brain Typing via Deep Feature Learning of EEG Signals
An electroencephalography (EEG) based Brain Computer Interface (BCI) enables people to communicate with the outside world by interpreting the EEG signals of their brains to interact with devices such as wheelchairs and intelligent robots. More specifically, motor imagery EEG (MI-EEG), which reflects a subjects active intent, is attracting increasing attention for a variety of BCI applications. Accurate classification of MI-EEG signals while essential for effective operation of BCI systems, is challenging due to the significant noise inherent in the signals and the lack of informative correlation between the signals and brain activities. In this paper, we propose a novel deep neural network based learning framework that affords perceptive insights into the relationship between the MI-EEG data and brain activities. We design a joint convolutional recurrent neural network that simultaneously learns robust high-level feature presentations through low-dimensional dense embeddings from raw MI-EEG signals. We also employ an Autoencoder layer to eliminate various artifacts such as background activities. The proposed approach has been evaluated extensively on a large- scale public MI-EEG dataset and a limited but easy-to-deploy dataset collected in our lab. The results show that our approach outperforms a series of baselines and the competitive state-of-the- art methods, yielding a classification accuracy of 95.53%. The applicability of our proposed approach is further demonstrated with a practical BCI system for typing.
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Model Checking of Cache for WCET Analysis Refinement
On real-time systems running under timing constraints, scheduling can be performed when one is aware of the worst case execution time (WCET) of tasks. Usually, the WCET of a task is unknown and schedulers make use of safe over-approximations given by static WCET analysis. To reduce the over-approximation, WCET analysis has to gain information about the underlying hardware behavior, such as pipelines and caches. In this paper, we focus on the cache analysis, which classifies memory accesses as hits/misses according to the set of possible cache states. We propose to refine the results of classical cache analysis using a model checker, introducing a new cache model for the least recently used (LRU) policy.
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Rational Solutions of the Painlevé-II Equation Revisited
The rational solutions of the Painlevé-II equation appear in several applications and are known to have many remarkable algebraic and analytic properties. They also have several different representations, useful in different ways for establishing these properties. In particular, Riemann-Hilbert representations have proven to be useful for extracting the asymptotic behavior of the rational solutions in the limit of large degree (equivalently the large-parameter limit). We review the elementary properties of the rational Painlevé-II functions, and then we describe three different Riemann-Hilbert representations of them that have appeared in the literature: a representation by means of the isomonodromy theory of the Flaschka-Newell Lax pair, a second representation by means of the isomonodromy theory of the Jimbo-Miwa Lax pair, and a third representation found by Bertola and Bothner related to pseudo-orthogonal polynomials. We prove that the Flaschka-Newell and Bertola-Bothner Riemann-Hilbert representations of the rational Painlevé-II functions are explicitly connected to each other. Finally, we review recent results describing the asymptotic behavior of the rational Painlevé-II functions obtained from these Riemann-Hilbert representations by means of the steepest descent method.
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PHAST: Protein-like heteropolymer analysis by statistical thermodynamics
PHAST is a software package written in standard Fortran, with MPI and CUDA extensions, able to efficiently perform parallel multicanonical Monte Carlo simulations of single or multiple heteropolymeric chains, as coarse-grained models for proteins. The outcome data can be straightforwardly analyzed within its microcanonical Statistical Thermodynamics module, which allows for computing the entropy, caloric curve, specific heat and free energies. As a case study, we investigate the aggregation of heteropolymers bioinspired on $A\beta_{25-33}$ fragments and their cross-seeding with $IAPP_{20-29}$ isoforms. Excellent parallel scaling is observed, even under numerically difficult first-order like phase transitions, which are properly described by the built-in fully reconfigurable force fields. Still, the package is free and open source, this shall motivate users to readily adapt it to specific purposes.
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An Information-Theoretic Analysis for Thompson Sampling with Many Actions
Information-theoretic Bayesian regret bounds of Russo and Van Roy capture the dependence of regret on prior uncertainty. However, this dependence is through entropy, which can become arbitrarily large as the number of actions increases. We establish new bounds that depend instead on a notion of rate-distortion. Among other things, this allows us to recover through information-theoretic arguments a near-optimal bound for the linear bandit. We also offer a bound for the logistic bandit that dramatically improves on the best previously available, though this bound depends on an information-theoretic statistic that we have only been able to quantify via computation.
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Optimal portfolio selection in an Itô-Markov additive market
We study a portfolio selection problem in a continuous-time Itô-Markov additive market with prices of financial assets described by Markov additive processes which combine Lévy processes and regime switching models. Thus the model takes into account two sources of risk: the jump diffusion risk and the regime switching risk. For this reason the market is incomplete. We complete the market by enlarging it with the use of a set of Markovian jump securities, Markovian power-jump securities and impulse regime switching securities. Moreover, we give conditions under which the market is asymptotic-arbitrage-free. We solve the portfolio selection problem in the Itô-Markov additive market for the power utility and the logarithmic utility.
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SPIRITS: Uncovering Unusual Infrared Transients With Spitzer
We present an ongoing, systematic search for extragalactic infrared transients, dubbed SPIRITS --- SPitzer InfraRed Intensive Transients Survey. In the first year, using Spitzer/IRAC, we searched 190 nearby galaxies with cadence baselines of one month and six months. We discovered over 1958 variables and 43 transients. Here, we describe the survey design and highlight 14 unusual infrared transients with no optical counterparts to deep limits, which we refer to as SPRITEs (eSPecially Red Intermediate Luminosity Transient Events). SPRITEs are in the infrared luminosity gap between novae and supernovae, with [4.5] absolute magnitudes between -11 and -14 (Vega-mag) and [3.6]-[4.5] colors between 0.3 mag and 1.6 mag. The photometric evolution of SPRITEs is diverse, ranging from < 0.1 mag/yr to > 7 mag/yr. SPRITEs occur in star-forming galaxies. We present an in-depth study of one of them, SPIRITS 14ajc in Messier 83, which shows shock-excited molecular hydrogen emission. This shock may have been triggered by the dynamic decay of a non-hierarchical system of massive stars that led to either the formation of a binary or a proto-stellar merger.
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Is the annual growth rate in balance of trade time series for Ireland nonlinear
We describe the Time Series Multivariate Adaptive Regressions Splines (TSMARS) method. This method is useful for identifying nonlinear structure in a time series. We use TSMARS to model the annual change in the balance of trade for Ireland from 1970 to 2007. We compare the TSMARS estimate with long memory ARFIMA estimates and long-term parsimonious linear models. We show that the change in the balance of trade is nonlinear and possesses weakly long range effects. Moreover, we compare the period prior to the introduction of the Intrastat system in 1993 with the period from 1993 onward. Here we show that in the earlier period the series had a substantial linear signal embedded in it suggesting that estimation efforts in the earlier period may have resulted in an over-smoothed series.
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Sparse-View X-Ray CT Reconstruction Using $\ell_1$ Prior with Learned Transform
A major challenge in X-ray computed tomography (CT) is reducing radiation dose while maintaining high quality of reconstructed images. To reduce the radiation dose, one can reduce the number of projection views (sparse-view CT); however, it becomes difficult to achieve high quality image reconstruction as the number of projection views decreases. Researchers have applied the concept of learning sparse representations from (high-quality) CT image dataset to the sparse-view CT reconstruction. We propose a new statistical CT reconstruction model that combines penalized weighted-least squares (PWLS) and $\ell_1$ regularization with learned sparsifying transform (PWLS-ST-$\ell_1$), and an algorithm for PWLS-ST-$\ell_1$. Numerical experiments for sparse-view 2D fan-beam CT and 3D axial cone-beam CT show that the $\ell_1$ regularizer significantly improves the sharpness of edges of reconstructed images compared to the CT reconstruction methods using edge-preserving regularizer and $\ell_2$ regularization with learned ST.
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Adversarial classification: An adversarial risk analysis approach
Classification problems in security settings are usually contemplated as confrontations in which one or more adversaries try to fool a classifier to obtain a benefit. Most approaches to such adversarial classification problems have focused on game theoretical ideas with strong underlying common knowledge assumptions, which are actually not realistic in security domains. We provide an alternative framework to such problem based on adversarial risk analysis, which we illustrate with several examples. Computational and implementation issues are discussed.
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Volume growth in the component of fibered twists
For a Liouville domain $W$ whose boundary admits a periodic Reeb flow, we can consider the connected component $[\tau] \in \pi_0(\text{Symp}^c(\widehat W))$ of fibered twists. In this paper, we investigate an entropy-type invariant, called the slow volume growth, of the component $[\tau]$ and give a uniform lower bound of the growth using wrapped Floer homology. We also show that $[\tau]$ has infinite order in $\pi_0(\text{Symp}^c(\widehat W))$ if there is an admissible Lagrangian $L$ in $W$ whose wrapped Floer homology is infinite dimensional. We apply our results to fibered twists coming from the Milnor fibers of $A_k$-type singularities and complements of a symplectic hypersurface in a real symplectic manifold. They admit so-called real Lagrangians, and we can explicitly compute wrapped Floer homology groups using a version of Morse-Bott spectral sequences.
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Scalar Reduction of a Neural Field Model with Spike Frequency Adaptation
We study a deterministic version of a one- and two-dimensional attractor neural network model of hippocampal activity first studied by Itskov et al 2011. We analyze the dynamics of the system on the ring and torus domain with an even periodized weight matrix, assum- ing weak and slow spike frequency adaptation and a weak stationary input current. On these domains, we find transitions from spatially localized stationary solutions ("bumps") to (periodically modulated) solutions ("sloshers"), as well as constant and non-constant velocity traveling bumps depending on the relative strength of external input current and adaptation. The weak and slow adaptation allows for a reduction of the system from a distributed partial integro-differential equation to a system of scalar Volterra integro-differential equations describing the movement of the centroid of the bump solution. Using this reduction, we show that on both domains, sloshing solutions arise through an Andronov-Hopf bifurcation and derive a normal form for the Hopf bifurcation on the ring. We also show existence and stability of constant velocity solutions on both domains using Evans functions. In contrast to existing studies, we assume a general weight matrix of Mexican-hat type in addition to a smooth firing rate function.
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Revisiting Elementary Denotational Semantics
Operational semantics have been enormously successful, in large part due to its flexibility and simplicity, but they are not compositional. Denotational semantics, on the other hand, are compositional but the lattice-theoretic models are complex and difficult to scale to large languages. However, there are elementary models of the $\lambda$-calculus that are much less complex: by Coppo, Dezani-Ciancaglini, and Salle (1979), Engeler (1981), and Plotkin (1993). This paper takes first steps toward answering the question: can elementary models be good for the day-to-day work of language specification, mechanization, and compiler correctness? The elementary models in the literature are simple, but they are not as intuitive as they could be. To remedy this, we create a new model that represents functions literally as finite graphs. Regarding mechanization, we give the first machine-checked proof of soundness and completeness of an elementary model with respect to an operational semantics. Regarding compiler correctness, we define a polyvariant inliner for the call-by-value $\lambda$-calculus and prove that its output is contextually equivalent to its input. Toward scaling elementary models to larger languages, we formulate our semantics in a monadic style, give a semantics for System F with general recursion, and mechanize the proof of type soundness.
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Dirac Composite Fermion - A Particle-Hole Spinor
The particle-hole (PH) symmetry at half-filled Landau level requires the relationship between the flux number N_phi and the particle number N on a sphere to be exactly N_phi - 2(N-1) = 1. The wave functions of composite fermions with 1/2 "orbital spin", which contributes to the shift "1" in the N_phi and N relationship, are proposed, shown to be PH symmetric, and validated with exact finite system results. It is shown the many-body composite electron and composite hole wave functions at half-filling can be formed from the two components of the same spinor wave function of a massless Dirac fermion at zero-magnetic field. It is further shown that away from half-filling, the many-body composite electron wave function at filling factor nu and its PH conjugated composite hole wave function at 1-nu can be formed from the two components of the very same spinor wave functions of a massless Dirac fermion at non-zero magnetic field. This relationship leads to the proposal of a very simple Dirac composite fermion effective field theory, where the two-component Dirac fermion field is a particle-hole spinor field coupled to the same emergent gauge field, with one field component describing the composite electrons and the other describing the PH conjugated composite holes. As such, the density of the Dirac spinor field is the density sum of the composite electron and hole field components, and therefore is equal to the degeneracy of the Lowest Landau level. On the other hand, the charge density coupled to the external magnetic field is the density difference between the composite electron and hole field components, and is therefore neutral at exactly half-filling. It is shown that the proposed particle-hole spinor effective field theory gives essentially the same electromagnetic responses as Son's Dirac composite fermion theory does.
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Safe Adaptive Importance Sampling
Importance sampling has become an indispensable strategy to speed up optimization algorithms for large-scale applications. Improved adaptive variants - using importance values defined by the complete gradient information which changes during optimization - enjoy favorable theoretical properties, but are typically computationally infeasible. In this paper we propose an efficient approximation of gradient-based sampling, which is based on safe bounds on the gradient. The proposed sampling distribution is (i) provably the best sampling with respect to the given bounds, (ii) always better than uniform sampling and fixed importance sampling and (iii) can efficiently be computed - in many applications at negligible extra cost. The proposed sampling scheme is generic and can easily be integrated into existing algorithms. In particular, we show that coordinate-descent (CD) and stochastic gradient descent (SGD) can enjoy significant a speed-up under the novel scheme. The proven efficiency of the proposed sampling is verified by extensive numerical testing.
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Secure Grouping Protocol Using a Deck of Cards
We consider a problem, which we call secure grouping, of dividing a number of parties into some subsets (groups) in the following manner: Each party has to know the other members of his/her group, while he/she may not know anything about how the remaining parties are divided (except for certain public predetermined constraints, such as the number of parties in each group). In this paper, we construct an information-theoretically secure protocol using a deck of physical cards to solve the problem, which is jointly executable by the parties themselves without a trusted third party. Despite the non-triviality and the potential usefulness of the secure grouping, our proposed protocol is fairly simple to describe and execute. Our protocol is based on algebraic properties of conjugate permutations. A key ingredient of our protocol is our new techniques to apply multiplication and inverse operations to hidden permutations (i.e., those encoded by using face-down cards), which would be of independent interest and would have various potential applications.
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Categorically closed topological groups
Let $\mathcal C$ be a subcategory of the category of topologized semigroups and their partial continuous homomorphisms. An object $X$ of the category ${\mathcal C}$ is called ${\mathcal C}$-closed if for each morphism $f:X\to Y$ of the category ${\mathcal C}$ the image $f(X)$ is closed in $Y$. In the paper we detect topological groups which are $\mathcal C$-closed for the categories $\mathcal C$ whose objects are Hausdorff topological (semi)groups and whose morphisms are isomorphic topological embeddings, injective continuous homomorphisms, continuous homomorphisms, or partial continuous homomorphisms with closed domain.
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Extracting significant signal of news consumption from social networks: the case of Twitter in Italian political elections
According to the Eurobarometer report about EU media use of May 2018, the number of European citizens who consult on-line social networks for accessing information is considerably increasing. In this work we analyze approximately $10^6$ tweets exchanged during the last Italian elections. By using an entropy-based null model discounting the activity of the users, we first identify potential political alliances within the group of verified accounts: if two verified users are retweeted more than expected by the non-verified ones, they are likely to be related. Then, we derive the users' affiliation to a coalition measuring the polarization of unverified accounts. Finally, we study the bipartite directed representation of the tweets and retweets network, in which tweets and users are collected on the two layers. Users with the highest out-degree identify the most popular ones, whereas highest out-degree posts are the most "viral". We identify significant content spreaders by statistically validating the connections that cannot be explained by users' tweeting activity and posts' virality by using an entropy-based null model as benchmark. The analysis of the directed network of validated retweets reveals signals of the alliances formed after the elections, highlighting commonalities of interests before the event of the national elections.
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Annealed Generative Adversarial Networks
We introduce a novel framework for adversarial training where the target distribution is annealed between the uniform distribution and the data distribution. We posited a conjecture that learning under continuous annealing in the nonparametric regime is stable irrespective of the divergence measures in the objective function and proposed an algorithm, dubbed {\ss}-GAN, in corollary. In this framework, the fact that the initial support of the generative network is the whole ambient space combined with annealing are key to balancing the minimax game. In our experiments on synthetic data, MNIST, and CelebA, {\ss}-GAN with a fixed annealing schedule was stable and did not suffer from mode collapse.
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Attitude Control of Spacecraft Formations Subject To Distributed Communication Delays
This paper considers the problem of achieving attitude consensus in spacecraft formations with bounded, time-varying communication delays between spacecraft connected as specified by a strongly connected topology. A state feedback con- troller is proposed and investigated using a time domain approach (via LMIs) and a frequency domain approach (via the small-gain theorem) to obtain delay depen- dent stability criteria to achieve the desired consensus. Simulations are presented to demonstrate the application of the strategy in a specific scenario.
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Cloud Radiative Effect Study Using Sky Camera
The analysis of clouds in the earth's atmosphere is important for a variety of applications, viz. weather reporting, climate forecasting, and solar energy generation. In this paper, we focus our attention on the impact of cloud on the total solar irradiance reaching the earth's surface. We use weather station to record the total solar irradiance. Moreover, we employ collocated ground-based sky camera to automatically compute the instantaneous cloud coverage. We analyze the relationship between measured solar irradiance and computed cloud coverage value, and conclude that higher cloud coverage greatly impacts the total solar irradiance. Such studies will immensely help in solar energy generation and forecasting.
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On Testing Machine Learning Programs
Nowadays, we are witnessing a wide adoption of Machine learning (ML) models in many safety-critical systems, thanks to recent breakthroughs in deep learning and reinforcement learning. Many people are now interacting with systems based on ML every day, e.g., voice recognition systems used by virtual personal assistants like Amazon Alexa or Google Home. As the field of ML continues to grow, we are likely to witness transformative advances in a wide range of areas, from finance, energy, to health and transportation. Given this growing importance of ML-based systems in our daily life, it is becoming utterly important to ensure their reliability. Recently, software researchers have started adapting concepts from the software testing domain (e.g., code coverage, mutation testing, or property-based testing) to help ML engineers detect and correct faults in ML programs. This paper reviews current existing testing practices for ML programs. First, we identify and explain challenges that should be addressed when testing ML programs. Next, we report existing solutions found in the literature for testing ML programs. Finally, we identify gaps in the literature related to the testing of ML programs and make recommendations of future research directions for the scientific community. We hope that this comprehensive review of software testing practices will help ML engineers identify the right approach to improve the reliability of their ML-based systems. We also hope that the research community will act on our proposed research directions to advance the state of the art of testing for ML programs.
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Scalable and Efficient Statistical Inference with Estimating Functions in the MapReduce Paradigm for Big Data
The theory of statistical inference along with the strategy of divide-and-conquer for large- scale data analysis has recently attracted considerable interest due to great popularity of the MapReduce programming paradigm in the Apache Hadoop software framework. The central analytic task in the development of statistical inference in the MapReduce paradigm pertains to the method of combining results yielded from separately mapped data batches. One seminal solution based on the confidence distribution has recently been established in the setting of maximum likelihood estimation in the literature. This paper concerns a more general inferential methodology based on estimating functions, termed as the Rao-type confidence distribution, of which the maximum likelihood is a special case. This generalization provides a unified framework of statistical inference that allows regression analyses of massive data sets of important types in a parallel and scalable fashion via a distributed file system, including longitudinal data analysis, survival data analysis, and quantile regression, which cannot be handled using the maximum likelihood method. This paper investigates four important properties of the proposed method: computational scalability, statistical optimality, methodological generality, and operational robustness. In particular, the proposed method is shown to be closely connected to Hansen's generalized method of moments (GMM) and Crowder's optimality. An interesting theoretical finding is that the asymptotic efficiency of the proposed Rao-type confidence distribution estimator is always greater or equal to the estimator obtained by processing the full data once. All these properties of the proposed method are illustrated via numerical examples in both simulation studies and real-world data analyses.
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Instability of pulses in gradient reaction-diffusion systems: A symplectic approach
In a scalar reaction-diffusion equation, it is known that the stability of a steady state can be determined from the Maslov index, a topological invariant that counts the state's critical points. In particular, this implies that pulse solutions are unstable. We extend this picture to pulses in reaction-diffusion systems with gradient nonlinearity. In particular, we associate a Maslov index to any asymptotically constant state, generalizing existing definitions of the Maslov index for homoclinic orbits. It is shown that this index equals the number of unstable eigenvalues for the linearized evolution equation. Finally, we use a symmetry argument to show that any pulse solution must have nonzero Maslov index, and hence be unstable.
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Consistency of the plug-in functional predictor of the Ornstein-Uhlenbeck process in Hilbert and Banach spaces
New results on functional prediction of the Ornstein-Uhlenbeck process in an autoregressive Hilbert-valued and Banach-valued frameworks are derived. Specifically, consistency of the maximum likelihood estimator of the autocorrelation operator, and of the associated plug-in predictor is obtained in both frameworks.
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Analysis of Sequence Polymorphism of LINEs and SINEs in Entamoeba histolytica
The goal of this dissertation is to study the sequence polymorphism in retrotransposable elements of Entamoeba histolytica. The Quasispecies theory, a concept of equilibrium (stationary), has been used to understand the behaviour of these elements. Two datasets of retrotransposons of Entamoeba histolytica have been used. We present results from both datasets of retrotransposons (SINE1s) of E. histolytica. We have calculated the mutation rate of EhSINE1s for both datasets and drawn a phylogenetic tree for newly determined EhSINE1s (dataset II). We have also discussed the variation in lengths of EhSINE1s for both datasets. Using the quasispecies model, we have shown how sequences of SINE1s vary within the population. The outputs of the quasispecies model are discussed in the presence and the absence of back mutation by taking different values of fitness. From our study of Non-long terminal repeat retrotransposons (LINEs and their non-autonomous partner's SINEs) of Entamoeba histolytica, we can conclude that an active EhSINE can generate very similar copies of itself by retrotransposition. Due to this reason, it increases mutations which give the result of sequence polymorphism. We have concluded that the mutation rate of SINE is very high. This high mutation rate provides an idea for the existence of SINEs, which may affect the genetic analysis of EhSINE1 ancestries, and calculation of phylogenetic distances.
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Classification of digital affine noncommutative geometries
It is known that connected translation invariant $n$-dimensional noncommutative differentials $d x^i$ on the algebra $k[x^1,\cdots,x^n]$ of polynomials in $n$-variables over a field $k$ are classified by commutative algebras $V$ on the vector space spanned by the coordinates. This data also applies to construct differentials on the Heisenberg algebra `spacetime' with relations $[x^\mu,x^\nu]=\lambda\Theta^{\mu\nu}$ where $ \Theta$ is an antisymmetric matrix as well as to Lie algebras with pre-Lie algebra structures. We specialise the general theory to the field $k={\ \mathbb{F}}_2$ of two elements, in which case translation invariant metrics (i.e. with constant coefficients) are equivalent to making $V$ a Frobenius algebras. We classify all of these and their quantum Levi-Civita bimodule connections for $n=2,3$, with partial results for $n=4$. For $n=2$ we find 3 inequivalent differential structures admitting 1,2 and 3 invariant metrics respectively. For $n=3$ we find 6 differential structures admitting $0,1,2,3,4,7$ invariant metrics respectively. We give some examples for $n=4$ and general $n$. Surprisingly, not all our geometries for $n\ge 2$ have zero quantum Riemann curvature. Quantum gravity is normally seen as a weighted `sum' over all possible metrics but our results are a step towards a deeper approach in which we must also `sum' over differential structures. Over ${\mathbb{F}}_2$ we construct some of our algebras and associated structures by digital gates, opening up the possibility of `digital geometry'.
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The vectorial Ribaucour transformation for submanifolds of constant sectional curvature
We obtain a reduction of the vectorial Ribaucour transformation that preserves the class of submanifolds of constant sectional curvature of space forms, which we call the $L$-transformation. It allows to construct a family of such submanifolds starting with a given one and a vector-valued solution of a system of linear partial differential equations. We prove a decomposition theorem for the $L$-transformation, which is a far-reaching generalization of the classical permutability formula for the Ribaucour transformation of surfaces of constant curvature in Euclidean three space. As a consequence, we derive a Bianchi-cube theorem, which allows to produce, from $k$ initial scalar $L$-transforms of a given submanifold of constant curvature, a whole $k$-dimensional cube all of whose remaining $2^k-(k+1)$ vertices are submanifolds with the same constant sectional curvature given by explicit algebraic formulae. We also obtain further reductions, as well as corresponding decomposition and Bianchi-cube theorems, for the classes of $n$-dimensional flat Lagrangian submanifolds of $\mathbb{C}^n$ and $n$-dimensional Lagrangian submanifolds with constant curvature $c$ of the complex projective space $\mathbb C\mathbb P^n(4c)$ or the complex hyperbolic space $\mathbb C\mathbb H^n(4c)$ of complex dimension $n$ and constant holomorphic curvature~4c.
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Social Networks through the Prism of Cognition
Human relations are driven by social events - people interact, exchange information, share knowledge and emotions, or gather news from mass media. These events leave traces in human memory. The initial strength of a trace depends on cognitive factors such as emotions or attention span. Each trace continuously weakens over time unless another related event activity strengthens it. Here, we introduce a novel Cognition-driven Social Network (CogSNet) model that accounts for cognitive aspects of social perception and explicitly represents human memory dynamics. For validation, we apply our model to NetSense data on social interactions among university students. The results show that CogSNet significantly improves quality of modeling of human interactions in social networks.
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Metriplectic Integrators for the Landau Collision Operator
We present a novel framework for addressing the nonlinear Landau collision integral in terms of finite element and other subspace projection methods. We employ the underlying metriplectic structure of the Landau collision integral and, using a Galerkin discretization for the velocity space, we transform the infinite-dimensional system into a finite-dimensional, time-continuous metriplectic system. Temporal discretization is accomplished using the concept of discrete gradients. The conservation of energy, momentum, and particle densities, as well as the production of entropy is demonstrated algebraically for the fully discrete system. Due to the generality of our approach, the conservation properties and the monotonic behavior of entropy are guaranteed for finite element discretizations in general, independently of the mesh configuration.
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Eliminating higher-multiplicity intersections in the metastable dimension range
The $r$-fold analogues of Whitney trick were `in the air' since 1960s. However, only in this century they were stated, proved and applied to obtain interesting results, most notably by Mabillard and Wagner. Here we prove and apply a version of the $r$-fold Whitney trick when general position $r$-tuple intersections have positive dimension. Theorem. Assume that $D=D_1\sqcup\ldots\sqcup D_r$ is disjoint union of $k$-dimensional disks, $rd\ge (r+1)k+3$, and $f:D\to B^d$ a proper PL (smooth) map such that $f\partial D_1\cap\ldots\cap f\partial D_r=\emptyset$. If the map $$f^r:\partial(D_1\times\ldots\times D_r)\to (B^d)^r-\{(x,x,\ldots,x)\in(B^d)^r\ |\ x\in B^d\}$$ extends to $D_1\times\ldots\times D_r$, then there is a proper PL (smooth) map $\overline f:D\to B^d$ such that $\overline f=f$ on $\partial D$ and $\overline fD_1\cap\ldots\cap \overline fD_r=\emptyset$.
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Lagrangian Transport Through Surfaces in Compressible Flows
A material-based, i.e., Lagrangian, methodology for exact integration of flux by volume-preserving flows through a surface has been developed recently in [Karrasch, SIAM J. Appl. Math., 76 (2016), pp. 1178-1190]. In the present paper, we first generalize this framework to general compressible flows, thereby solving the donating region problem in full generality. Second, we demonstrate the efficacy of this approach on a slightly idealized version of a classic two-dimensional mixing problem: transport in a cross-channel micromixer, as considered recently in [Balasuriya, SIAM J. Appl. Dyn. Syst., 16 (2017), pp. 1015-1044].
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