|
--- |
|
license: mit |
|
tags: |
|
- biology |
|
--- |
|
[[FFN paper]](https://www.nature.com/articles/s41592-018-0049-4), [[data from the paper]](https://storage.googleapis.com/j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/README.txt) |
|
|
|
We downloaded and processed the data into formats that are easier to share. |
|
- Ground truth |
|
- train: `j0126-train-34vol.zip`, 34 densely labeled subvolumes |
|
- validaiton: `valid_12_skeletons.h5`, manually traced skeletons for 12 neurons |
|
- test: `test_50_skeletons.h5`, manually traced skeletons for 50 neurons |
|
|
|
- Image and FFN result |
|
- use [cloud-volume](https://github.com/seung-lab/cloud-volume) to download from the [neuroglancer link](https://neuroglancer-demo.appspot.com/#!%7B%22dimensions%22:%7B%22x%22:%5B9e-9%2C%22m%22%5D%2C%22y%22:%5B9e-9%2C%22m%22%5D%2C%22z%22:%5B2e-8%2C%22m%22%5D%7D%2C%22position%22:%5B4277.1728515625%2C4547.27392578125%2C2850.5%5D%2C%22crossSectionScale%22:6.01976911688937%2C%22projectionScale%22:16384%2C%22layers%22:%5B%7B%22type%22:%22image%22%2C%22source%22:%22precomputed://gs://j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/rawdata_realigned%22%2C%22tab%22:%22source%22%2C%22name%22:%22rawdata_realigned%22%7D%2C%7B%22type%22:%22segmentation%22%2C%22source%22:%22precomputed://gs://j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/ffn_segmentation%22%2C%22tab%22:%22source%22%2C%22segments%22:%5B%5D%2C%22name%22:%22ffn_segmentation%22%7D%5D%2C%22layout%22:%224panel%22%7D) |
|
- image: precomputed://gs://j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/rawdata_realigned |
|
- ffn-seg: precomputed://gs://j0126-nature-methods-data/GgwKmcKgrcoNxJccKuGIzRnQqfit9hnfK1ctZzNbnuU/ffn_segmentation |
