Datasets:
source_dataset
stringclasses 12
values | raw_data_file
stringclasses 792
values | worm
stringclasses 577
values | neuron
stringclasses 358
values | slot
int32 0
299
| is_labeled_neuron
bool 2
classes | is_unlabeled_neuron
bool 2
classes | original_calcium_data
sequencelengths 661
5.85k
| calcium_data
sequencelengths 693
8.78k
| original_smooth_calcium_data
sequencelengths 661
5.85k
| smooth_calcium_data
sequencelengths 693
8.78k
| original_residual_calcium
sequencelengths 661
5.85k
| residual_calcium
sequencelengths 693
8.78k
| original_smooth_residual_calcium
sequencelengths 661
5.85k
| smooth_residual_calcium
sequencelengths 693
8.78k
| smooth_method
stringclasses 1
value | interpolate_method
stringclasses 1
value | original_time_in_seconds
sequencelengths 661
5.85k
| time_in_seconds
sequencelengths 693
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| original_dt
sequencelengths 661
5.85k
| dt
sequencelengths 693
8.78k
| original_median_dt
float32 0.2
0.64
| median_dt
float32 0.33
0.33
| original_max_timesteps
int32 661
5.85k
| max_timesteps
int32 693
8.78k
|
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ADLL | 6 | true | false | [
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] | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ADLR | 7 | true | false | [0.25537109375,5.30078125,3.134765625,1.7587890625,1.9580078125,1.4892578125,0.70166015625,0.4174804(...TRUNCATED) | [0.25537109375,4.734375,3.904296875,2.80078125,2.15625,1.8193359375,1.912109375,1.5234375,0.88623046(...TRUNCATED) | [0.25537109375,5.30078125,3.134765625,1.7587890625,1.9580078125,1.4892578125,0.70166015625,0.4174804(...TRUNCATED) | [0.25537109375,4.734375,3.904296875,2.80078125,2.15625,1.8193359375,1.912109375,1.5234375,0.88623046(...TRUNCATED) | [13.453125,5.16015625,-3.69140625,-0.42236328125,-0.36572265625,-1.5791015625,-1.3525390625,0.924316(...TRUNCATED) | [13.453125,6.08984375,-0.5498046875,-2.896484375,-1.3662109375,-0.405029296875,-0.485107421875,-1.49(...TRUNCATED) | [13.453125,5.16015625,-3.69140625,-0.42236328125,-0.36572265625,-1.5791015625,-1.3525390625,0.924316(...TRUNCATED) | [13.453125,6.08984375,-0.5498046875,-2.896484375,-1.3662109375,-0.405029296875,-0.485107421875,-1.49(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ASGR | 42 | true | false | [0.257568359375,1.2822265625,1.2529296875,1.306640625,0.7177734375,-0.331787109375,0.6875,0.47900390(...TRUNCATED) | [0.257568359375,1.1669921875,1.263671875,1.2666015625,1.291015625,1.1279296875,0.61474609375,-0.2548(...TRUNCATED) | [0.257568359375,1.2822265625,1.2529296875,1.306640625,0.7177734375,-0.331787109375,0.6875,0.47900390(...TRUNCATED) | [0.257568359375,1.1669921875,1.263671875,1.2666015625,1.291015625,1.1279296875,0.61474609375,-0.2548(...TRUNCATED) | [2.73046875,1.4619140625,-0.00980377197265625,-0.85009765625,-2.01953125,-0.00272369384765625,1.0068(...TRUNCATED) | [2.73046875,1.6044921875,0.51220703125,-0.214111328125,-0.60791015625,-1.205078125,-1.8203125,-0.150(...TRUNCATED) | [2.73046875,1.4619140625,-0.00980377197265625,-0.85009765625,-2.01953125,-0.00272369384765625,1.0068(...TRUNCATED) | [2.73046875,1.6044921875,0.51220703125,-0.214111328125,-0.60791015625,-1.205078125,-1.8203125,-0.150(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ASIL | 45 | true | false | [0.043365478515625,1.18359375,0.418212890625,1.1484375,0.79638671875,0.5185546875,-0.603515625,0.081(...TRUNCATED) | [0.043365478515625,1.0556640625,0.68994140625,0.595703125,0.93798828125,1.0419921875,0.76904296875,0(...TRUNCATED) | [0.043365478515625,1.18359375,0.418212890625,1.1484375,0.79638671875,0.5185546875,-0.603515625,0.081(...TRUNCATED) | [0.043365478515625,1.0556640625,0.68994140625,0.595703125,0.93798828125,1.0419921875,0.76904296875,0(...TRUNCATED) | [3.0390625,0.88818359375,-0.640625,-0.1435546875,-0.76220703125,-1.767578125,-0.5205078125,1.7802734(...TRUNCATED) | [3.0390625,1.1298828125,-0.09783935546875,-0.51953125,-0.287109375,-0.331298828125,-0.861328125,-1.6(...TRUNCATED) | [3.0390625,0.88818359375,-0.640625,-0.1435546875,-0.76220703125,-1.767578125,-0.5205078125,1.7802734(...TRUNCATED) | [3.0390625,1.1298828125,-0.09783935546875,-0.51953125,-0.287109375,-0.331298828125,-0.861328125,-1.6(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ASIR | 46 | true | false | [0.6611328125,1.7041015625,1.515625,1.361328125,1.275390625,1.8525390625,1.421875,1.2626953125,1.584(...TRUNCATED) | [0.6611328125,1.5869140625,1.58203125,1.478515625,1.40625,1.3349609375,1.33203125,1.810546875,1.5224(...TRUNCATED) | [0.6611328125,1.7041015625,1.515625,1.361328125,1.275390625,1.8525390625,1.421875,1.2626953125,1.584(...TRUNCATED) | [0.6611328125,1.5869140625,1.58203125,1.478515625,1.40625,1.3349609375,1.33203125,1.810546875,1.5224(...TRUNCATED) | [2.78125,1.328125,-0.340087890625,-0.2095947265625,0.634765625,0.1666259765625,-0.74462890625,0.1849(...TRUNCATED) | [2.78125,1.4912109375,0.251953125,-0.308349609375,-0.247314453125,0.046356201171875,0.5888671875,0.2(...TRUNCATED) | [2.78125,1.328125,-0.340087890625,-0.2095947265625,0.634765625,0.1666259765625,-0.74462890625,0.1849(...TRUNCATED) | [2.78125,1.4912109375,0.251953125,-0.308349609375,-0.247314453125,0.046356201171875,0.5888671875,0.2(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ASJL | 47 | true | false | [0.125732421875,5.59375,13.1640625,7.84375,3.251953125,2.861328125,1.5517578125,1.60546875,0.9868164(...TRUNCATED) | [0.125732421875,4.98046875,10.4765625,11.8671875,9.375,6.44921875,3.212890625,2.890625,1.8583984375,(...TRUNCATED) | [0.125732421875,5.59375,13.1640625,7.84375,3.251953125,2.861328125,1.5517578125,1.60546875,0.9868164(...TRUNCATED) | [0.125732421875,4.98046875,10.4765625,11.8671875,9.375,6.44921875,3.212890625,2.890625,1.8583984375,(...TRUNCATED) | [14.578125,15.578125,7.3671875,-9.625,-5.8203125,-2.14453125,-1.5693359375,-0.6826171875,-0.36694335(...TRUNCATED) | [14.578125,15.46875,10.28125,3.236328125,-4.72265625,-8.4765625,-5.4609375,-2.4140625,-1.7041015625,(...TRUNCATED) | [14.578125,15.578125,7.3671875,-9.625,-5.8203125,-2.14453125,-1.5693359375,-0.6826171875,-0.36694335(...TRUNCATED) | [14.578125,15.46875,10.28125,3.236328125,-4.72265625,-8.4765625,-5.4609375,-2.4140625,-1.7041015625,(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ASKL | 49 | true | false | [0.294189453125,6.34375,4.8359375,3.318359375,2.974609375,2.6953125,2.064453125,2.5625,2.873046875,2(...TRUNCATED) | [0.294189453125,5.6640625,5.37109375,4.46875,3.755859375,3.21484375,2.947265625,2.716796875,2.212890(...TRUNCATED) | [0.294189453125,6.34375,4.8359375,3.318359375,2.974609375,2.6953125,2.064453125,2.5625,2.873046875,2(...TRUNCATED) | [0.294189453125,5.6640625,5.37109375,4.46875,3.755859375,3.21484375,2.947265625,2.716796875,2.212890(...TRUNCATED) | [16.125,7.28515625,-2.873046875,-1.306640625,-0.75390625,-1.1455078125,-0.1480712890625,1.0244140625(...TRUNCATED) | [16.125,8.28125,0.732421875,-2.4921875,-1.7587890625,-1.1396484375,-0.79248046875,-1.1171875,-0.3815(...TRUNCATED) | [16.125,7.28515625,-2.873046875,-1.306640625,-0.75390625,-1.1455078125,-0.1480712890625,1.0244140625(...TRUNCATED) | [16.125,8.28125,0.732421875,-2.4921875,-1.7587890625,-1.1396484375,-0.79248046875,-1.1171875,-0.3815(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | ASKR | 50 | true | false | [0.263427734375,7.05859375,5.125,3.3828125,2.84765625,2.1484375,2.48828125,1.8935546875,1.384765625,(...TRUNCATED) | [0.263427734375,6.29296875,5.8125,4.703125,3.884765625,3.220703125,2.77734375,2.19921875,2.408203125(...TRUNCATED) | [0.263427734375,7.05859375,5.125,3.3828125,2.84765625,2.1484375,2.48828125,1.8935546875,1.384765625,(...TRUNCATED) | [0.263427734375,6.29296875,5.8125,4.703125,3.884765625,3.220703125,2.77734375,2.19921875,2.408203125(...TRUNCATED) | [18.109375,7.94140625,-3.572265625,-1.7099609375,-1.5107421875,-0.431884765625,-0.340576171875,-1.39(...TRUNCATED) | [18.109375,9.0859375,0.513671875,-3.119140625,-2.248046875,-1.6494140625,-1.4052734375,-0.5107421875(...TRUNCATED) | [18.109375,7.94140625,-3.572265625,-1.7099609375,-1.5107421875,-0.431884765625,-0.340576171875,-1.39(...TRUNCATED) | [18.109375,9.0859375,0.513671875,-3.119140625,-2.248046875,-1.6494140625,-1.4052734375,-0.5107421875(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | AWAL | 72 | true | false | [-0.4384765625,1.6669921875,1.248046875,0.822265625,0.5830078125,0.25732421875,0.25390625,0.46362304(...TRUNCATED) | [-0.4384765625,1.4296875,1.396484375,1.14453125,0.9453125,0.74951171875,0.55126953125,0.28125,0.2546(...TRUNCATED) | [-0.4384765625,1.6669921875,1.248046875,0.822265625,0.5830078125,0.25732421875,0.25390625,0.46362304(...TRUNCATED) | [-0.4384765625,1.4296875,1.396484375,1.14453125,0.9453125,0.74951171875,0.55126953125,0.28125,0.2546(...TRUNCATED) | [5.61328125,2.642578125,-0.80029296875,-0.5791015625,-0.69189453125,-0.406982421875,0.26611328125,-0(...TRUNCATED) | [5.61328125,2.974609375,0.421630859375,-0.74658203125,-0.64306640625,-0.61328125,-0.6640625,-0.42773(...TRUNCATED) | [5.61328125,2.642578125,-0.80029296875,-0.5791015625,-0.69189453125,-0.406982421875,0.26611328125,-0(...TRUNCATED) | [5.61328125,2.974609375,0.421630859375,-0.74658203125,-0.64306640625,-0.61328125,-0.6640625,-0.42773(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
Lin2023 | opensource_data/Lin2023/run303_prfrd_data 13.mat | worm0 | AWAR | 73 | true | false | [-0.231201171875,2.265625,1.7158203125,1.390625,1.080078125,0.595703125,0.58544921875,0.72607421875,(...TRUNCATED) | [-0.231201171875,1.984375,1.9111328125,1.63671875,1.484375,1.296875,1.0322265625,0.630859375,0.58740(...TRUNCATED) | [-0.231201171875,2.265625,1.7158203125,1.390625,1.080078125,0.595703125,0.58544921875,0.72607421875,(...TRUNCATED) | [-0.231201171875,1.984375,1.9111328125,1.63671875,1.484375,1.296875,1.0322265625,0.630859375,0.58740(...TRUNCATED) | [6.65625,3.080078125,-0.92333984375,-0.6328125,-0.9765625,-0.61181640625,0.1685791015625,-0.51367187(...TRUNCATED) | [6.65625,3.48046875,0.49755859375,-0.8525390625,-0.716796875,-0.73681640625,-0.94091796875,-0.638671(...TRUNCATED) | [6.65625,3.080078125,-0.92333984375,-0.6328125,-0.9765625,-0.61181640625,0.1685791015625,-0.51367187(...TRUNCATED) | [6.65625,3.48046875,0.49755859375,-0.8525390625,-0.716796875,-0.73681640625,-0.94091796875,-0.638671(...TRUNCATED) | none | linear | [0.0,0.375244140625,0.826171875,1.537109375,1.9580078125,2.361328125,2.7578125,3.146484375,3.5507812(...TRUNCATED) | [0.0,0.3330078125,0.666015625,0.9990234375,1.33203125,1.6650390625,1.998046875,2.330078125,2.6640625(...TRUNCATED) | [0.0,0.375244140625,0.450927734375,0.71142578125,0.421142578125,0.40185546875,0.396484375,0.390625,0(...TRUNCATED) | [0.0,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.3330078125,0.33(...TRUNCATED) | 0.400005 | 0.333 | 673 | 810 |
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CITATION
FIGURE
Compiled neural activity dataset from GCaMP calcium imaging of C. elegans from multiple experimental sources, standardized to a common sampling rate and organization format.
EXAMPLE USAGE
Google Colab notebook example of loading this dataset and then plotting a few samples of calcium data.
ORIGINAL DATA FILES
We provide a Dropbox link to download the original data that we obtained from various sources, including publicly available and unpublished data shared with us by researchers. The raw_data_file in the dataset table references these files.
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