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gh_patches_debug_4650 | rasdani/github-patches | git_diff | pyinstaller__pyinstaller-2587 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
win32: multibyte path bootloader import issue with python2
OS: windows 7/windows 10
Py: Python 2.7.13
Pyinstaller: Pyinstaller 3.3-dev 964547c
tl;dr the pyinstaller one-file failed to proper import during bootloader stage when the path involve multibyte character under win32 py2,
1. create a username with multibyte character, `許功蓋` is most suitable one for this as it contain special character
2. install some package that make bootloader do some import
`pip install pypiwin32`
3. sample script for pyinstaller to start with
`broken_py2_path.py`
```
# -*- coding: utf-8 -*-
import pywintypes
def main():
pass
if __name__ == '__main__':
main()
```
4. bundle it
`pyinstaller -F -d broken_py2_path.py`
5. execute `broken_py2_path.exe`
6. bam
```
E:\新增資料夾>broken_py2_path.exe
PyInstaller Bootloader 3.x
LOADER: executable is E:\?啣?鞈?憭閱broken_py2_path.exe
LOADER: homepath is E:\?啣?鞈?憭?
LOADER: _MEIPASS2 is NULL
LOADER: archivename is E:\?啣?鞈?憭閱broken_py2_path.exe
LOADER: Extracting binaries
LOADER: Executing self as child
LOADER: set _MEIPASS2 to C:\Users\閮勗??AppData\Local\Temp\_MEI143282
LOADER: Setting up to run child
LOADER: Creating child process
LOADER: Waiting for child process to finish...
PyInstaller Bootloader 3.x
LOADER: executable is E:\?啣?鞈?憭閱broken_py2_path.exe
LOADER: homepath is E:\?啣?鞈?憭?
LOADER: _MEIPASS2 is C:\Users\閮勗??AppData\Local\Temp\_MEI143282
LOADER: archivename is E:\?啣?鞈?憭閱broken_py2_path.exe
LOADER: SetDllDirectory(C:\Users\閮勗??AppData\Local\Temp\_MEI143282)
LOADER: Already in the child - running user's code.
LOADER: manifestpath: C:\Users\閮勗??AppData\Local\Temp\_MEI143282\broken_py2_path.exe.manifest
LOADER: Activation context created
LOADER: Activation context activated
LOADER: Python library: C:\Users\閮勗??AppData\Local\Temp\_MEI143282\python27.dll
LOADER: Loaded functions from Python library.
LOADER: Manipulating environment (sys.path, sys.prefix)
LOADER: sys.prefix is C:\Users\許功蓋\AppData\Local\Temp\_MEI14~1
LOADER: Setting runtime options
LOADER: Bootloader option: pyi-windows-manifest-filename broken_py2_path.exe.manifest
LOADER: Initializing python
LOADER: Overriding Python's sys.path
LOADER: Post-init sys.path is C:\Users\閮勗??AppData\Local\Temp\_MEI143282
LOADER: Setting sys.argv
LOADER: setting sys._MEIPASS
LOADER: importing modules from CArchive
LOADER: extracted struct
LOADER: callfunction returned...
LOADER: extracted pyimod01_os_path
LOADER: callfunction returned...
LOADER: extracted pyimod02_archive
LOADER: callfunction returned...
LOADER: extracted pyimod03_importers
LOADER: callfunction returned...
LOADER: Installing PYZ archive with Python modules.
LOADER: PYZ archive: out00-PYZ.pyz
LOADER: Running pyiboot01_bootstrap.py
LOADER: Running broken_py2_path.py
Traceback (most recent call last):
File "broken_py2_path.py", line 3, in <module>
File "d:\andcycle\documents\work\corelight\proj\poc\runtime\Lib\site-packages\PyInstaller\loader\pyimod03_importers.py", line 396, in load_module
File "site-packages\win32\lib\pywintypes.py", line 124, in <module>
File "site-packages\win32\lib\pywintypes.py", line 61, in __import_pywin32_system_module__
ImportError: Module 'pywintypes' isn't in frozen sys.path ['C:\\Users\\\xb3\\\xa5\\\xbb\\AppData\\Local\\Temp\\_MEI14~1']
Failed to execute script broken_py2_path
LOADER: OK.
LOADER: Cleaning up Python interpreter.
LOADER: Back to parent (RC: -1)
LOADER: Doing cleanup
LOADER: Freeing archive status for E:\?啣?鞈?憭閱broken_py2_path.exe
E:\新增資料夾>
```
</issue>
<code>
[start of PyInstaller/loader/pyiboot01_bootstrap.py]
1 #-----------------------------------------------------------------------------
2 # Copyright (c) 2005-2017, PyInstaller Development Team.
3 #
4 # Distributed under the terms of the GNU General Public License with exception
5 # for distributing bootloader.
6 #
7 # The full license is in the file COPYING.txt, distributed with this software.
8 #-----------------------------------------------------------------------------
9
10
11 ### Start bootstrap process
12 # Only python built-in modules can be used.
13
14 import sys
15 import pyimod03_importers
16
17 # Extend Python import machinery by adding PEP302 importers to sys.meta_path.
18 pyimod03_importers.install()
19
20
21 ### Bootstrap process is complete.
22 # We can use other python modules (e.g. os)
23
24
25 import os
26
27
28 # Let other python modules know that the code is running in frozen mode.
29 if not hasattr(sys, 'frozen'):
30 sys.frozen = True
31
32 # sys._MEIPASS is now set in the bootloader. Hooray.
33
34
35 # Python 3 C-API function Py_SetPath() resets sys.prefix to empty string.
36 # Python 2 was using PYTHONHOME for sys.prefix. Let's do the same for Python 3.
37 sys.prefix = sys._MEIPASS
38 sys.exec_prefix = sys.prefix
39
40
41 # Python 3.3+ defines also sys.base_prefix. Let's set them too.
42 # TODO Do these variables does not hurt on Python 3.2 and 2.7?
43 sys.base_prefix = sys.prefix
44 sys.base_exec_prefix = sys.exec_prefix
45
46
47 # Some packages behaves differently when running inside virtual environment.
48 # E.g. IPython tries to append path VIRTUAL_ENV to sys.path.
49 # For the frozen app we want to prevent this behavior.
50 VIRTENV = 'VIRTUAL_ENV'
51 if VIRTENV in os.environ:
52 # On some platforms (e.g. AIX) 'os.unsetenv()' is not available and then
53 # deleting the var from os.environ does not delete it from the environment.
54 os.environ[VIRTENV] = ''
55 del os.environ[VIRTENV]
56
57
58 # Ensure sys.path contains absolute paths. Otherwise import of other python
59 # modules will fail when current working directory is changed by frozen
60 # application.
61 python_path = []
62 for pth in sys.path:
63 python_path.append(os.path.abspath(pth))
64 sys.path = python_path
65
66
67 # Implement workaround for prints in non-console mode. In non-console mode
68 # (with "pythonw"), print randomly fails with "[errno 9] Bad file descriptor"
69 # when the printed text is flushed (eg: buffer full); this is because the
70 # sys.stdout object is bound to an invalid file descriptor.
71 # Python 3000 has a fix for it (http://bugs.python.org/issue1415), but we
72 # feel that a workaround in PyInstaller is a good thing since most people
73 # found this problem for the first time with PyInstaller as they don't
74 # usually run their code with "pythonw" (and it's hard to debug anyway).
75 class NullWriter:
76 softspace = 0
77 encoding = 'UTF-8'
78
79 def write(*args):
80 pass
81
82 def flush(*args):
83 pass
84
85 # Some packages are checking if stdout/stderr is available.
86 # e.g. youtube-dl for details see #1883
87 def isatty(self):
88 return False
89
90
91 # In Python 3 sys.stdout/err is None in GUI mode on Windows.
92 # In Python 2 we need to check .fileno().
93 if sys.stdout is None or sys.stdout.fileno() < 0:
94 sys.stdout = NullWriter()
95 if sys.stderr is None or sys.stderr.fileno() < 0:
96 sys.stderr = NullWriter()
97
98
99 # At least on Windows, Python seems to hook up the codecs on this
100 # import, so it's not enough to just package up all the encodings.
101 #
102 # It was also reported that without 'encodings' module the frozen executable
103 # will fail to load in some configurations:
104 #
105 # http://www.pyinstaller.org/ticket/651
106 #
107 # Import 'encodings' module in a run-time hook is not enough since some
108 # run-time hooks require this module and the order of running code from
109 # from run-time hooks is not defined.
110 try:
111 import encodings
112 except ImportError:
113 pass
114
115
116 # In the Python interpreter 'warnings' module is imported when 'sys.warnoptions'
117 # is not empty. Mimic this behavior in PyInstaller.
118 if sys.warnoptions:
119 import warnings
120
121 try:
122 import ctypes
123 import os
124 from ctypes import LibraryLoader, DEFAULT_MODE
125
126 def _frozen_name(name):
127 if name:
128 frozen_name = os.path.join(sys._MEIPASS, os.path.basename(name))
129 if os.path.exists(frozen_name):
130 name = frozen_name
131 return name
132
133 class PyInstallerImportError(OSError):
134 def __init__(self, name):
135 self.msg = ("Failed to load dynlib/dll %r. "
136 "Most probably this dynlib/dll was not found "
137 "when the application was frozen.") % name
138 self.args = (self.msg,)
139
140 class PyInstallerCDLL(ctypes.CDLL):
141 def __init__(self, name, *args, **kwargs):
142 name = _frozen_name(name)
143 try:
144 super(PyInstallerCDLL, self).__init__(name, *args, **kwargs)
145 except Exception as base_error:
146 raise PyInstallerImportError(name)
147
148 ctypes.CDLL = PyInstallerCDLL
149 ctypes.cdll = LibraryLoader(PyInstallerCDLL)
150
151 class PyInstallerPyDLL(ctypes.PyDLL):
152 def __init__(self, name, *args, **kwargs):
153 name = _frozen_name(name)
154 try:
155 super(PyInstallerPyDLL, self).__init__(name, *args, **kwargs)
156 except Exception as base_error:
157 raise PyInstallerImportError(name)
158
159 ctypes.PyDLL = PyInstallerPyDLL
160 ctypes.pydll = LibraryLoader(PyInstallerPyDLL)
161
162 if sys.platform.startswith('win'):
163 class PyInstallerWinDLL(ctypes.WinDLL):
164 def __init__(self, name,*args, **kwargs):
165 name = _frozen_name(name)
166 try:
167 super(PyInstallerWinDLL, self).__init__(name, *args, **kwargs)
168 except Exception as base_error:
169 raise PyInstallerImportError(name)
170
171 ctypes.WinDLL = PyInstallerWinDLL
172 ctypes.windll = LibraryLoader(PyInstallerWinDLL)
173
174 class PyInstallerOleDLL(ctypes.OleDLL):
175 def __init__(self, name,*args, **kwargs):
176 name = _frozen_name(name)
177 try:
178 super(PyInstallerOleDLL, self).__init__(name, *args, **kwargs)
179 except Exception as base_error:
180 raise PyInstallerImportError(name)
181
182 ctypes.OleDLL = PyInstallerOleDLL
183 ctypes.oledll = LibraryLoader(PyInstallerOleDLL)
184 except ImportError:
185 pass
186
187 # On Mac OS X insert sys._MEIPASS in the first position of the list of paths
188 # that ctypes uses to search for libraries.
189 #
190 # Note: 'ctypes' module will NOT be bundled with every app because code in this
191 # module is not scanned for module dependencies. It is safe to wrap
192 # 'ctypes' module into 'try/except ImportError' block.
193 if sys.platform.startswith('darwin'):
194 try:
195 from ctypes.macholib import dyld
196 dyld.DEFAULT_LIBRARY_FALLBACK.insert(0, sys._MEIPASS)
197 except ImportError:
198 # Do nothing when module 'ctypes' is not available.
199 pass
200
201
202 # Make .eggs and zipfiles available at runtime
203 d = "eggs"
204 d = os.path.join(sys._MEIPASS, d)
205 # Test if the 'eggs' directory exists. This allows to
206 # opportunistically including this script into the packaged exe, even
207 # if no eggs as found when packaging the program. (Which may be a
208 # use-case, see issue #653.
209 if os.path.isdir(d):
210 for fn in os.listdir(d):
211 sys.path.append(os.path.join(d, fn))
212
[end of PyInstaller/loader/pyiboot01_bootstrap.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/PyInstaller/loader/pyiboot01_bootstrap.py b/PyInstaller/loader/pyiboot01_bootstrap.py
--- a/PyInstaller/loader/pyiboot01_bootstrap.py
+++ b/PyInstaller/loader/pyiboot01_bootstrap.py
@@ -60,7 +60,12 @@
# application.
python_path = []
for pth in sys.path:
- python_path.append(os.path.abspath(pth))
+ if not os.path.isabs(pth):
+ # careful about using abspath with non-unicode path,
+ # it breaks multibyte character that contain slash under win32/Python 2
+ # TODO: Revert when dropping suport for is_py2.
+ pth = os.path.abspath(pth)
+ python_path.append(pth)
sys.path = python_path
| {"golden_diff": "diff --git a/PyInstaller/loader/pyiboot01_bootstrap.py b/PyInstaller/loader/pyiboot01_bootstrap.py\n--- a/PyInstaller/loader/pyiboot01_bootstrap.py\n+++ b/PyInstaller/loader/pyiboot01_bootstrap.py\n@@ -60,7 +60,12 @@\n # application.\n python_path = []\n for pth in sys.path:\n- python_path.append(os.path.abspath(pth))\n+ if not os.path.isabs(pth):\n+ # careful about using abspath with non-unicode path,\n+ # it breaks multibyte character that contain slash under win32/Python 2\n+ # TODO: Revert when dropping suport for is_py2.\n+ pth = os.path.abspath(pth)\n+ python_path.append(pth)\n sys.path = python_path\n", "issue": "win32: multibyte path bootloader import issue with python2 \nOS: windows 7/windows 10\r\nPy: Python 2.7.13\r\nPyinstaller: Pyinstaller 3.3-dev 964547c\r\n\r\ntl;dr the pyinstaller one-file failed to proper import during bootloader stage when the path involve multibyte character under win32 py2,\r\n\r\n1. create a username with multibyte character, `\u8a31\u529f\u84cb` is most suitable one for this as it contain special character\r\n\r\n2. install some package that make bootloader do some import\r\n`pip install pypiwin32`\r\n\r\n3. sample script for pyinstaller to start with\r\n`broken_py2_path.py`\r\n```\r\n# -*- coding: utf-8 -*-\r\n\r\nimport pywintypes\r\n\r\ndef main():\r\n\tpass\r\n\t\r\nif __name__ == '__main__':\r\n\tmain()\r\n```\r\n\r\n4. bundle it\r\n`pyinstaller -F -d broken_py2_path.py`\r\n\r\n5. execute `broken_py2_path.exe`\r\n\r\n6. bam\r\n```\r\nE:\\\u65b0\u589e\u8cc7\u6599\u593e>broken_py2_path.exe\r\nPyInstaller Bootloader 3.x\r\nLOADER: executable is E:\\?\u5563?\u9788\uf2ea?\u61ad\u95b1broken_py2_path.exe\r\nLOADER: homepath is E:\\?\u5563?\u9788\uf2ea?\u61ad?\r\nLOADER: _MEIPASS2 is NULL\r\nLOADER: archivename is E:\\?\u5563?\u9788\uf2ea?\u61ad\u95b1broken_py2_path.exe\r\nLOADER: Extracting binaries\r\nLOADER: Executing self as child\r\nLOADER: set _MEIPASS2 to C:\\Users\\\u95ae\u52d7??\uf4f6AppData\\Local\\Temp\\_MEI143282\r\nLOADER: Setting up to run child\r\nLOADER: Creating child process\r\nLOADER: Waiting for child process to finish...\r\nPyInstaller Bootloader 3.x\r\nLOADER: executable is E:\\?\u5563?\u9788\uf2ea?\u61ad\u95b1broken_py2_path.exe\r\nLOADER: homepath is E:\\?\u5563?\u9788\uf2ea?\u61ad?\r\nLOADER: _MEIPASS2 is C:\\Users\\\u95ae\u52d7??\uf4f6AppData\\Local\\Temp\\_MEI143282\r\nLOADER: archivename is E:\\?\u5563?\u9788\uf2ea?\u61ad\u95b1broken_py2_path.exe\r\nLOADER: SetDllDirectory(C:\\Users\\\u95ae\u52d7??\uf4f6AppData\\Local\\Temp\\_MEI143282)\r\nLOADER: Already in the child - running user's code.\r\nLOADER: manifestpath: C:\\Users\\\u95ae\u52d7??\uf4f6AppData\\Local\\Temp\\_MEI143282\\broken_py2_path.exe.manifest\r\nLOADER: Activation context created\r\nLOADER: Activation context activated\r\nLOADER: Python library: C:\\Users\\\u95ae\u52d7??\uf4f6AppData\\Local\\Temp\\_MEI143282\\python27.dll\r\nLOADER: Loaded functions from Python library.\r\nLOADER: Manipulating environment (sys.path, sys.prefix)\r\nLOADER: sys.prefix is C:\\Users\\\u8a31\u529f\u84cb\\AppData\\Local\\Temp\\_MEI14~1\r\nLOADER: Setting runtime options\r\nLOADER: Bootloader option: pyi-windows-manifest-filename broken_py2_path.exe.manifest\r\nLOADER: Initializing python\r\nLOADER: Overriding Python's sys.path\r\nLOADER: Post-init sys.path is C:\\Users\\\u95ae\u52d7??\uf4f6AppData\\Local\\Temp\\_MEI143282\r\nLOADER: Setting sys.argv\r\nLOADER: setting sys._MEIPASS\r\nLOADER: importing modules from CArchive\r\nLOADER: extracted struct\r\nLOADER: callfunction returned...\r\nLOADER: extracted pyimod01_os_path\r\nLOADER: callfunction returned...\r\nLOADER: extracted pyimod02_archive\r\nLOADER: callfunction returned...\r\nLOADER: extracted pyimod03_importers\r\nLOADER: callfunction returned...\r\nLOADER: Installing PYZ archive with Python modules.\r\nLOADER: PYZ archive: out00-PYZ.pyz\r\nLOADER: Running pyiboot01_bootstrap.py\r\nLOADER: Running broken_py2_path.py\r\nTraceback (most recent call last):\r\n File \"broken_py2_path.py\", line 3, in <module>\r\n File \"d:\\andcycle\\documents\\work\\corelight\\proj\\poc\\runtime\\Lib\\site-packages\\PyInstaller\\loader\\pyimod03_importers.py\", line 396, in load_module\r\n File \"site-packages\\win32\\lib\\pywintypes.py\", line 124, in <module>\r\n File \"site-packages\\win32\\lib\\pywintypes.py\", line 61, in __import_pywin32_system_module__\r\nImportError: Module 'pywintypes' isn't in frozen sys.path ['C:\\\\Users\\\\\\xb3\\\\\\xa5\\\\\\xbb\\\\AppData\\\\Local\\\\Temp\\\\_MEI14~1']\r\nFailed to execute script broken_py2_path\r\nLOADER: OK.\r\nLOADER: Cleaning up Python interpreter.\r\nLOADER: Back to parent (RC: -1)\r\nLOADER: Doing cleanup\r\nLOADER: Freeing archive status for E:\\?\u5563?\u9788\uf2ea?\u61ad\u95b1broken_py2_path.exe\r\n\r\nE:\\\u65b0\u589e\u8cc7\u6599\u593e>\r\n```\r\n\n", "before_files": [{"content": "#-----------------------------------------------------------------------------\n# Copyright (c) 2005-2017, PyInstaller Development Team.\n#\n# Distributed under the terms of the GNU General Public License with exception\n# for distributing bootloader.\n#\n# The full license is in the file COPYING.txt, distributed with this software.\n#-----------------------------------------------------------------------------\n\n\n### Start bootstrap process\n# Only python built-in modules can be used.\n\nimport sys\nimport pyimod03_importers\n\n# Extend Python import machinery by adding PEP302 importers to sys.meta_path.\npyimod03_importers.install()\n\n\n### Bootstrap process is complete.\n# We can use other python modules (e.g. os)\n\n\nimport os\n\n\n# Let other python modules know that the code is running in frozen mode.\nif not hasattr(sys, 'frozen'):\n sys.frozen = True\n\n# sys._MEIPASS is now set in the bootloader. Hooray.\n\n\n# Python 3 C-API function Py_SetPath() resets sys.prefix to empty string.\n# Python 2 was using PYTHONHOME for sys.prefix. Let's do the same for Python 3.\nsys.prefix = sys._MEIPASS\nsys.exec_prefix = sys.prefix\n\n\n# Python 3.3+ defines also sys.base_prefix. Let's set them too.\n# TODO Do these variables does not hurt on Python 3.2 and 2.7?\nsys.base_prefix = sys.prefix\nsys.base_exec_prefix = sys.exec_prefix\n\n\n# Some packages behaves differently when running inside virtual environment.\n# E.g. IPython tries to append path VIRTUAL_ENV to sys.path.\n# For the frozen app we want to prevent this behavior.\nVIRTENV = 'VIRTUAL_ENV'\nif VIRTENV in os.environ:\n # On some platforms (e.g. AIX) 'os.unsetenv()' is not available and then\n # deleting the var from os.environ does not delete it from the environment.\n os.environ[VIRTENV] = ''\n del os.environ[VIRTENV]\n\n\n# Ensure sys.path contains absolute paths. Otherwise import of other python\n# modules will fail when current working directory is changed by frozen\n# application.\npython_path = []\nfor pth in sys.path:\n python_path.append(os.path.abspath(pth))\n sys.path = python_path\n\n\n# Implement workaround for prints in non-console mode. In non-console mode\n# (with \"pythonw\"), print randomly fails with \"[errno 9] Bad file descriptor\"\n# when the printed text is flushed (eg: buffer full); this is because the\n# sys.stdout object is bound to an invalid file descriptor.\n# Python 3000 has a fix for it (http://bugs.python.org/issue1415), but we\n# feel that a workaround in PyInstaller is a good thing since most people\n# found this problem for the first time with PyInstaller as they don't\n# usually run their code with \"pythonw\" (and it's hard to debug anyway).\nclass NullWriter:\n softspace = 0\n encoding = 'UTF-8'\n\n def write(*args):\n pass\n\n def flush(*args):\n pass\n\n # Some packages are checking if stdout/stderr is available.\n # e.g. youtube-dl for details see #1883\n def isatty(self):\n return False\n\n\n# In Python 3 sys.stdout/err is None in GUI mode on Windows.\n# In Python 2 we need to check .fileno().\nif sys.stdout is None or sys.stdout.fileno() < 0:\n sys.stdout = NullWriter()\nif sys.stderr is None or sys.stderr.fileno() < 0:\n sys.stderr = NullWriter()\n\n\n# At least on Windows, Python seems to hook up the codecs on this\n# import, so it's not enough to just package up all the encodings.\n#\n# It was also reported that without 'encodings' module the frozen executable\n# will fail to load in some configurations:\n#\n# http://www.pyinstaller.org/ticket/651\n#\n# Import 'encodings' module in a run-time hook is not enough since some\n# run-time hooks require this module and the order of running code from\n# from run-time hooks is not defined.\ntry:\n import encodings\nexcept ImportError:\n pass\n\n\n# In the Python interpreter 'warnings' module is imported when 'sys.warnoptions'\n# is not empty. Mimic this behavior in PyInstaller.\nif sys.warnoptions:\n import warnings\n\ntry:\n import ctypes\n import os\n from ctypes import LibraryLoader, DEFAULT_MODE\n\n def _frozen_name(name):\n if name:\n frozen_name = os.path.join(sys._MEIPASS, os.path.basename(name))\n if os.path.exists(frozen_name):\n name = frozen_name\n return name\n\n class PyInstallerImportError(OSError):\n def __init__(self, name):\n self.msg = (\"Failed to load dynlib/dll %r. \"\n \"Most probably this dynlib/dll was not found \"\n \"when the application was frozen.\") % name\n self.args = (self.msg,)\n\n class PyInstallerCDLL(ctypes.CDLL):\n def __init__(self, name, *args, **kwargs):\n name = _frozen_name(name)\n try:\n super(PyInstallerCDLL, self).__init__(name, *args, **kwargs)\n except Exception as base_error:\n raise PyInstallerImportError(name)\n\n ctypes.CDLL = PyInstallerCDLL\n ctypes.cdll = LibraryLoader(PyInstallerCDLL)\n\n class PyInstallerPyDLL(ctypes.PyDLL):\n def __init__(self, name, *args, **kwargs):\n name = _frozen_name(name)\n try:\n super(PyInstallerPyDLL, self).__init__(name, *args, **kwargs)\n except Exception as base_error:\n raise PyInstallerImportError(name)\n\n ctypes.PyDLL = PyInstallerPyDLL\n ctypes.pydll = LibraryLoader(PyInstallerPyDLL)\n\n if sys.platform.startswith('win'):\n class PyInstallerWinDLL(ctypes.WinDLL):\n def __init__(self, name,*args, **kwargs):\n name = _frozen_name(name)\n try:\n super(PyInstallerWinDLL, self).__init__(name, *args, **kwargs)\n except Exception as base_error:\n raise PyInstallerImportError(name)\n\n ctypes.WinDLL = PyInstallerWinDLL\n ctypes.windll = LibraryLoader(PyInstallerWinDLL)\n\n class PyInstallerOleDLL(ctypes.OleDLL):\n def __init__(self, name,*args, **kwargs):\n name = _frozen_name(name)\n try:\n super(PyInstallerOleDLL, self).__init__(name, *args, **kwargs)\n except Exception as base_error:\n raise PyInstallerImportError(name)\n\n ctypes.OleDLL = PyInstallerOleDLL\n ctypes.oledll = LibraryLoader(PyInstallerOleDLL)\nexcept ImportError:\n pass\n\n# On Mac OS X insert sys._MEIPASS in the first position of the list of paths\n# that ctypes uses to search for libraries.\n#\n# Note: 'ctypes' module will NOT be bundled with every app because code in this\n# module is not scanned for module dependencies. It is safe to wrap\n# 'ctypes' module into 'try/except ImportError' block.\nif sys.platform.startswith('darwin'):\n try:\n from ctypes.macholib import dyld\n dyld.DEFAULT_LIBRARY_FALLBACK.insert(0, sys._MEIPASS)\n except ImportError:\n # Do nothing when module 'ctypes' is not available.\n pass\n\n\n# Make .eggs and zipfiles available at runtime\nd = \"eggs\"\nd = os.path.join(sys._MEIPASS, d)\n# Test if the 'eggs' directory exists. This allows to\n# opportunistically including this script into the packaged exe, even\n# if no eggs as found when packaging the program. (Which may be a\n# use-case, see issue #653.\nif os.path.isdir(d):\n for fn in os.listdir(d):\n sys.path.append(os.path.join(d, fn))\n", "path": "PyInstaller/loader/pyiboot01_bootstrap.py"}]} | 4,034 | 182 |
gh_patches_debug_20232 | rasdani/github-patches | git_diff | ansible__ansible-17394 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
network _template not checking arguments correctly
##### ISSUE TYPE
- Bug Report
##### COMPONENT NAME
lib/ansible/plugins/action/net_template.py
##### ANSIBLE VERSION
devel
##### CONFIGURATION
##### OS / ENVIRONMENT
##### SUMMARY
##### STEPS TO REPRODUCE
```
---
- name: Backup existing configuration
eos_template:
backup: yes
```
No other `vars` set
same for `ios_template`
##### EXPECTED RESULTS
`msg": "missing required arguments: host"` (or src)
##### ACTUAL RESULTS
```
File "/home/gundalow/git/ansible-inc/ansible/lib/ansible/plugins/action/net_template.py", line 43, in run
self._handle_template()
File "/home/gundalow/git/ansible-inc/ansible/lib/ansible/plugins/action/net_template.py", line 80, in _handle_template
if os.path.isabs(src) or urlparse.urlsplit('src').scheme:
File "/usr/lib/python2.7/posixpath.py", line 54, in isabs
return s.startswith('/')
AttributeError: 'NoneType' object has no attribute 'startswith'
```
</issue>
<code>
[start of lib/ansible/plugins/action/net_template.py]
1 #
2 # Copyright 2015 Peter Sprygada <[email protected]>
3 #
4 # This file is part of Ansible
5 #
6 # Ansible is free software: you can redistribute it and/or modify
7 # it under the terms of the GNU General Public License as published by
8 # the Free Software Foundation, either version 3 of the License, or
9 # (at your option) any later version.
10 #
11 # Ansible is distributed in the hope that it will be useful,
12 # but WITHOUT ANY WARRANTY; without even the implied warranty of
13 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 # GNU General Public License for more details.
15 #
16 # You should have received a copy of the GNU General Public License
17 # along with Ansible. If not, see <http://www.gnu.org/licenses/>.
18 #
19 from __future__ import (absolute_import, division, print_function)
20 __metaclass__ = type
21
22 import sys
23 import os
24 import time
25 import glob
26 import urlparse
27
28 from ansible.plugins.action import ActionBase
29 from ansible.utils.boolean import boolean
30 from ansible.utils.unicode import to_unicode
31
32 BOOLEANS = ('true', 'false', 'yes', 'no')
33
34 class ActionModule(ActionBase):
35
36 TRANSFERS_FILES = False
37
38 def run(self, tmp=None, task_vars=None):
39 result = super(ActionModule, self).run(tmp, task_vars)
40 result['changed'] = False
41
42 try:
43 self._handle_template()
44 except ValueError as exc:
45 return dict(failed=True, msg=exc.message)
46
47 result.update(self._execute_module(module_name=self._task.action,
48 module_args=self._task.args, task_vars=task_vars))
49
50 if self._task.args.get('backup') and result.get('_backup'):
51 # User requested backup and no error occurred in module.
52 # NOTE: If there is a parameter error, _backup key may not be in results.
53 self._write_backup(task_vars['inventory_hostname'], result['_backup'])
54
55 if '_backup' in result:
56 del result['_backup']
57
58 return result
59
60 def _get_working_path(self):
61 cwd = self._loader.get_basedir()
62 if self._task._role is not None:
63 cwd = self._task._role._role_path
64 return cwd
65
66 def _write_backup(self, host, contents):
67 backup_path = self._get_working_path() + '/backup'
68 if not os.path.exists(backup_path):
69 os.mkdir(backup_path)
70 for fn in glob.glob('%s/%s*' % (backup_path, host)):
71 os.remove(fn)
72 tstamp = time.strftime("%Y-%m-%d@%H:%M:%S", time.localtime(time.time()))
73 filename = '%s/%s_config.%s' % (backup_path, host, tstamp)
74 open(filename, 'w').write(contents)
75
76 def _handle_template(self):
77 src = self._task.args.get('src')
78 working_path = self._get_working_path()
79
80 if os.path.isabs(src) or urlparse.urlsplit('src').scheme:
81 source = src
82 else:
83 source = self._loader.path_dwim_relative(working_path, 'templates', src)
84 if not source:
85 source = self._loader.path_dwim_relative(working_path, src)
86
87 if not os.path.exists(source):
88 return
89
90 try:
91 with open(source, 'r') as f:
92 template_data = to_unicode(f.read())
93 except IOError:
94 return dict(failed=True, msg='unable to load src file')
95
96 # Create a template search path in the following order:
97 # [working_path, self_role_path, dependent_role_paths, dirname(source)]
98 searchpath = [working_path]
99 if self._task._role is not None:
100 searchpath.append(self._task._role._role_path)
101 dep_chain = self._task._block.get_dep_chain()
102 if dep_chain is not None:
103 for role in dep_chain:
104 searchpath.append(role._role_path)
105 searchpath.append(os.path.dirname(source))
106 self._templar.environment.loader.searchpath = searchpath
107 self._task.args['src'] = self._templar.template(template_data)
108
109
110
[end of lib/ansible/plugins/action/net_template.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/lib/ansible/plugins/action/net_template.py b/lib/ansible/plugins/action/net_template.py
--- a/lib/ansible/plugins/action/net_template.py
+++ b/lib/ansible/plugins/action/net_template.py
@@ -41,7 +41,7 @@
try:
self._handle_template()
- except ValueError as exc:
+ except (ValueError, AttributeError) as exc:
return dict(failed=True, msg=exc.message)
result.update(self._execute_module(module_name=self._task.action,
@@ -75,9 +75,12 @@
def _handle_template(self):
src = self._task.args.get('src')
+ if not src:
+ raise ValueError('missing required arguments: src')
+
working_path = self._get_working_path()
- if os.path.isabs(src) or urlparse.urlsplit('src').scheme:
+ if os.path.isabs(src) or urlparse.urlsplit(src).scheme:
source = src
else:
source = self._loader.path_dwim_relative(working_path, 'templates', src)
| {"golden_diff": "diff --git a/lib/ansible/plugins/action/net_template.py b/lib/ansible/plugins/action/net_template.py\n--- a/lib/ansible/plugins/action/net_template.py\n+++ b/lib/ansible/plugins/action/net_template.py\n@@ -41,7 +41,7 @@\n \n try:\n self._handle_template()\n- except ValueError as exc:\n+ except (ValueError, AttributeError) as exc:\n return dict(failed=True, msg=exc.message)\n \n result.update(self._execute_module(module_name=self._task.action,\n@@ -75,9 +75,12 @@\n \n def _handle_template(self):\n src = self._task.args.get('src')\n+ if not src:\n+ raise ValueError('missing required arguments: src')\n+\n working_path = self._get_working_path()\n \n- if os.path.isabs(src) or urlparse.urlsplit('src').scheme:\n+ if os.path.isabs(src) or urlparse.urlsplit(src).scheme:\n source = src\n else:\n source = self._loader.path_dwim_relative(working_path, 'templates', src)\n", "issue": "network _template not checking arguments correctly\n##### ISSUE TYPE\n- Bug Report\n##### COMPONENT NAME\n\nlib/ansible/plugins/action/net_template.py\n##### ANSIBLE VERSION\n\ndevel\n##### CONFIGURATION\n##### OS / ENVIRONMENT\n##### SUMMARY\n##### STEPS TO REPRODUCE\n\n```\n\n---\n- name: Backup existing configuration\n eos_template:\n backup: yes\n```\n\nNo other `vars` set\n\nsame for `ios_template`\n##### EXPECTED RESULTS\n\n`msg\": \"missing required arguments: host\"` (or src)\n##### ACTUAL RESULTS\n\n```\n File \"/home/gundalow/git/ansible-inc/ansible/lib/ansible/plugins/action/net_template.py\", line 43, in run\n self._handle_template()\n File \"/home/gundalow/git/ansible-inc/ansible/lib/ansible/plugins/action/net_template.py\", line 80, in _handle_template\n if os.path.isabs(src) or urlparse.urlsplit('src').scheme:\n File \"/usr/lib/python2.7/posixpath.py\", line 54, in isabs\n return s.startswith('/')\nAttributeError: 'NoneType' object has no attribute 'startswith'\n```\n\n", "before_files": [{"content": "#\n# Copyright 2015 Peter Sprygada <[email protected]>\n#\n# This file is part of Ansible\n#\n# Ansible is free software: you can redistribute it and/or modify\n# it under the terms of the GNU General Public License as published by\n# the Free Software Foundation, either version 3 of the License, or\n# (at your option) any later version.\n#\n# Ansible is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n# GNU General Public License for more details.\n#\n# You should have received a copy of the GNU General Public License\n# along with Ansible. If not, see <http://www.gnu.org/licenses/>.\n#\nfrom __future__ import (absolute_import, division, print_function)\n__metaclass__ = type\n\nimport sys\nimport os\nimport time\nimport glob\nimport urlparse\n\nfrom ansible.plugins.action import ActionBase\nfrom ansible.utils.boolean import boolean\nfrom ansible.utils.unicode import to_unicode\n\nBOOLEANS = ('true', 'false', 'yes', 'no')\n\nclass ActionModule(ActionBase):\n\n TRANSFERS_FILES = False\n\n def run(self, tmp=None, task_vars=None):\n result = super(ActionModule, self).run(tmp, task_vars)\n result['changed'] = False\n\n try:\n self._handle_template()\n except ValueError as exc:\n return dict(failed=True, msg=exc.message)\n\n result.update(self._execute_module(module_name=self._task.action,\n module_args=self._task.args, task_vars=task_vars))\n\n if self._task.args.get('backup') and result.get('_backup'):\n # User requested backup and no error occurred in module.\n # NOTE: If there is a parameter error, _backup key may not be in results.\n self._write_backup(task_vars['inventory_hostname'], result['_backup'])\n\n if '_backup' in result:\n del result['_backup']\n\n return result\n\n def _get_working_path(self):\n cwd = self._loader.get_basedir()\n if self._task._role is not None:\n cwd = self._task._role._role_path\n return cwd\n\n def _write_backup(self, host, contents):\n backup_path = self._get_working_path() + '/backup'\n if not os.path.exists(backup_path):\n os.mkdir(backup_path)\n for fn in glob.glob('%s/%s*' % (backup_path, host)):\n os.remove(fn)\n tstamp = time.strftime(\"%Y-%m-%d@%H:%M:%S\", time.localtime(time.time()))\n filename = '%s/%s_config.%s' % (backup_path, host, tstamp)\n open(filename, 'w').write(contents)\n\n def _handle_template(self):\n src = self._task.args.get('src')\n working_path = self._get_working_path()\n\n if os.path.isabs(src) or urlparse.urlsplit('src').scheme:\n source = src\n else:\n source = self._loader.path_dwim_relative(working_path, 'templates', src)\n if not source:\n source = self._loader.path_dwim_relative(working_path, src)\n\n if not os.path.exists(source):\n return\n\n try:\n with open(source, 'r') as f:\n template_data = to_unicode(f.read())\n except IOError:\n return dict(failed=True, msg='unable to load src file')\n\n # Create a template search path in the following order:\n # [working_path, self_role_path, dependent_role_paths, dirname(source)]\n searchpath = [working_path]\n if self._task._role is not None:\n searchpath.append(self._task._role._role_path)\n dep_chain = self._task._block.get_dep_chain()\n if dep_chain is not None:\n for role in dep_chain:\n searchpath.append(role._role_path)\n searchpath.append(os.path.dirname(source))\n self._templar.environment.loader.searchpath = searchpath\n self._task.args['src'] = self._templar.template(template_data)\n\n\n", "path": "lib/ansible/plugins/action/net_template.py"}]} | 1,917 | 235 |
gh_patches_debug_28348 | rasdani/github-patches | git_diff | ibis-project__ibis-3263 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
docs: add blurb about the datafusion backend
After #2918 lands, we need to mention it in the docs.
</issue>
<code>
[start of ibis/backends/datafusion/__init__.py]
1 from __future__ import annotations
2
3 import re
4 from typing import Mapping
5
6 import datafusion as df
7 import pyarrow as pa
8
9 import ibis.common.exceptions as com
10 import ibis.expr.schema as sch
11 import ibis.expr.types as ir
12 from ibis.backends.base import BaseBackend
13
14 from .compiler import translate
15
16
17 def _to_pyarrow_table(frame):
18 batches = frame.collect()
19 if batches:
20 return pa.Table.from_batches(batches)
21 else:
22 # TODO(kszucs): file a bug to datafusion because the fields'
23 # nullability from frame.schema() is not always consistent
24 # with the first record batch's schema
25 return pa.Table.from_batches(batches, schema=frame.schema())
26
27
28 class Backend(BaseBackend):
29 name = 'datafusion'
30 builder = None
31
32 @property
33 def version(self):
34 try:
35 import importlib.metadata as importlib_metadata
36 except ImportError:
37 # TODO: remove this when Python 3.7 support is dropped
38 import importlib_metadata
39 return importlib_metadata.version("datafusion")
40
41 def do_connect(self, config):
42 """
43 Create a DataFusionClient for use with Ibis
44
45 Parameters
46 ----------
47 config : DataFusionContext or dict
48
49 Returns
50 -------
51 DataFusionClient
52 """
53 if isinstance(config, df.ExecutionContext):
54 self._context = config
55 else:
56 self._context = df.ExecutionContext()
57
58 for name, path in config.items():
59 strpath = str(path)
60 if strpath.endswith('.csv'):
61 self.register_csv(name, path)
62 elif strpath.endswith('.parquet'):
63 self.register_parquet(name, path)
64 else:
65 raise ValueError(
66 "Currently the DataFusion backend only supports CSV "
67 "files with the extension .csv and Parquet files with "
68 "the .parquet extension."
69 )
70
71 def current_database(self):
72 raise NotImplementedError()
73
74 def list_databases(self, like: str = None) -> list[str]:
75 raise NotImplementedError()
76
77 def list_tables(self, like: str = None, database: str = None) -> list[str]:
78 """List the available tables."""
79 tables = list(self._context.tables())
80 if like is not None:
81 pattern = re.compile(like)
82 return list(filter(lambda t: pattern.findall(t), tables))
83 return tables
84
85 def table(self, name, schema=None):
86 catalog = self._context.catalog()
87 database = catalog.database('public')
88 table = database.table(name)
89 schema = sch.infer(table.schema)
90 return self.table_class(name, schema, self).to_expr()
91
92 def register_csv(self, name, path, schema=None):
93 self._context.register_csv(name, path, schema=schema)
94
95 def register_parquet(self, name, path, schema=None):
96 self._context.register_parquet(name, path, schema=schema)
97
98 def execute(
99 self,
100 expr: ir.Expr,
101 params: Mapping[ir.Expr, object] = None,
102 limit: str = 'default',
103 **kwargs,
104 ):
105 if isinstance(expr, ir.TableExpr):
106 frame = self.compile(expr, params, **kwargs)
107 table = _to_pyarrow_table(frame)
108 return table.to_pandas()
109 elif isinstance(expr, ir.ColumnExpr):
110 # expression must be named for the projection
111 expr = expr.name('tmp').to_projection()
112 frame = self.compile(expr, params, **kwargs)
113 table = _to_pyarrow_table(frame)
114 return table['tmp'].to_pandas()
115 elif isinstance(expr, ir.ScalarExpr):
116 if expr.op().root_tables():
117 # there are associated datafusion tables so convert the expr
118 # to a selection which we can directly convert to a datafusion
119 # plan
120 expr = expr.name('tmp').to_projection()
121 frame = self.compile(expr, params, **kwargs)
122 else:
123 # doesn't have any tables associated so create a plan from a
124 # dummy datafusion table
125 compiled = self.compile(expr, params, **kwargs)
126 frame = self._context.empty_table().select(compiled)
127 table = _to_pyarrow_table(frame)
128 return table[0][0].as_py()
129 else:
130 raise com.IbisError(
131 f"Cannot execute expression of type: {type(expr)}"
132 )
133
134 def compile(
135 self, expr: ir.Expr, params: Mapping[ir.Expr, object] = None, **kwargs
136 ):
137 return translate(expr)
138
[end of ibis/backends/datafusion/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/ibis/backends/datafusion/__init__.py b/ibis/backends/datafusion/__init__.py
--- a/ibis/backends/datafusion/__init__.py
+++ b/ibis/backends/datafusion/__init__.py
@@ -83,6 +83,20 @@
return tables
def table(self, name, schema=None):
+ """Get an ibis expression representing a DataFusion table.
+
+ Parameters
+ ---------
+ name
+ The name of the table to retreive
+ schema
+ An optional schema
+
+ Returns
+ -------
+ ibis.expr.types.TableExpr
+ A table expression
+ """
catalog = self._context.catalog()
database = catalog.database('public')
table = database.table(name)
@@ -90,9 +104,31 @@
return self.table_class(name, schema, self).to_expr()
def register_csv(self, name, path, schema=None):
+ """Register a CSV file with with `name` located at `path`.
+
+ Parameters
+ ----------
+ name
+ The name of the table
+ path
+ The path to the CSV file
+ schema
+ An optional schema
+ """
self._context.register_csv(name, path, schema=schema)
def register_parquet(self, name, path, schema=None):
+ """Register a parquet file with with `name` located at `path`.
+
+ Parameters
+ ----------
+ name
+ The name of the table
+ path
+ The path to the parquet file
+ schema
+ An optional schema
+ """
self._context.register_parquet(name, path, schema=schema)
def execute(
| {"golden_diff": "diff --git a/ibis/backends/datafusion/__init__.py b/ibis/backends/datafusion/__init__.py\n--- a/ibis/backends/datafusion/__init__.py\n+++ b/ibis/backends/datafusion/__init__.py\n@@ -83,6 +83,20 @@\n return tables\n \n def table(self, name, schema=None):\n+ \"\"\"Get an ibis expression representing a DataFusion table.\n+\n+ Parameters\n+ ---------\n+ name\n+ The name of the table to retreive\n+ schema\n+ An optional schema\n+\n+ Returns\n+ -------\n+ ibis.expr.types.TableExpr\n+ A table expression\n+ \"\"\"\n catalog = self._context.catalog()\n database = catalog.database('public')\n table = database.table(name)\n@@ -90,9 +104,31 @@\n return self.table_class(name, schema, self).to_expr()\n \n def register_csv(self, name, path, schema=None):\n+ \"\"\"Register a CSV file with with `name` located at `path`.\n+\n+ Parameters\n+ ----------\n+ name\n+ The name of the table\n+ path\n+ The path to the CSV file\n+ schema\n+ An optional schema\n+ \"\"\"\n self._context.register_csv(name, path, schema=schema)\n \n def register_parquet(self, name, path, schema=None):\n+ \"\"\"Register a parquet file with with `name` located at `path`.\n+\n+ Parameters\n+ ----------\n+ name\n+ The name of the table\n+ path\n+ The path to the parquet file\n+ schema\n+ An optional schema\n+ \"\"\"\n self._context.register_parquet(name, path, schema=schema)\n \n def execute(\n", "issue": "docs: add blurb about the datafusion backend\nAfter #2918 lands, we need to mention it in the docs.\n", "before_files": [{"content": "from __future__ import annotations\n\nimport re\nfrom typing import Mapping\n\nimport datafusion as df\nimport pyarrow as pa\n\nimport ibis.common.exceptions as com\nimport ibis.expr.schema as sch\nimport ibis.expr.types as ir\nfrom ibis.backends.base import BaseBackend\n\nfrom .compiler import translate\n\n\ndef _to_pyarrow_table(frame):\n batches = frame.collect()\n if batches:\n return pa.Table.from_batches(batches)\n else:\n # TODO(kszucs): file a bug to datafusion because the fields'\n # nullability from frame.schema() is not always consistent\n # with the first record batch's schema\n return pa.Table.from_batches(batches, schema=frame.schema())\n\n\nclass Backend(BaseBackend):\n name = 'datafusion'\n builder = None\n\n @property\n def version(self):\n try:\n import importlib.metadata as importlib_metadata\n except ImportError:\n # TODO: remove this when Python 3.7 support is dropped\n import importlib_metadata\n return importlib_metadata.version(\"datafusion\")\n\n def do_connect(self, config):\n \"\"\"\n Create a DataFusionClient for use with Ibis\n\n Parameters\n ----------\n config : DataFusionContext or dict\n\n Returns\n -------\n DataFusionClient\n \"\"\"\n if isinstance(config, df.ExecutionContext):\n self._context = config\n else:\n self._context = df.ExecutionContext()\n\n for name, path in config.items():\n strpath = str(path)\n if strpath.endswith('.csv'):\n self.register_csv(name, path)\n elif strpath.endswith('.parquet'):\n self.register_parquet(name, path)\n else:\n raise ValueError(\n \"Currently the DataFusion backend only supports CSV \"\n \"files with the extension .csv and Parquet files with \"\n \"the .parquet extension.\"\n )\n\n def current_database(self):\n raise NotImplementedError()\n\n def list_databases(self, like: str = None) -> list[str]:\n raise NotImplementedError()\n\n def list_tables(self, like: str = None, database: str = None) -> list[str]:\n \"\"\"List the available tables.\"\"\"\n tables = list(self._context.tables())\n if like is not None:\n pattern = re.compile(like)\n return list(filter(lambda t: pattern.findall(t), tables))\n return tables\n\n def table(self, name, schema=None):\n catalog = self._context.catalog()\n database = catalog.database('public')\n table = database.table(name)\n schema = sch.infer(table.schema)\n return self.table_class(name, schema, self).to_expr()\n\n def register_csv(self, name, path, schema=None):\n self._context.register_csv(name, path, schema=schema)\n\n def register_parquet(self, name, path, schema=None):\n self._context.register_parquet(name, path, schema=schema)\n\n def execute(\n self,\n expr: ir.Expr,\n params: Mapping[ir.Expr, object] = None,\n limit: str = 'default',\n **kwargs,\n ):\n if isinstance(expr, ir.TableExpr):\n frame = self.compile(expr, params, **kwargs)\n table = _to_pyarrow_table(frame)\n return table.to_pandas()\n elif isinstance(expr, ir.ColumnExpr):\n # expression must be named for the projection\n expr = expr.name('tmp').to_projection()\n frame = self.compile(expr, params, **kwargs)\n table = _to_pyarrow_table(frame)\n return table['tmp'].to_pandas()\n elif isinstance(expr, ir.ScalarExpr):\n if expr.op().root_tables():\n # there are associated datafusion tables so convert the expr\n # to a selection which we can directly convert to a datafusion\n # plan\n expr = expr.name('tmp').to_projection()\n frame = self.compile(expr, params, **kwargs)\n else:\n # doesn't have any tables associated so create a plan from a\n # dummy datafusion table\n compiled = self.compile(expr, params, **kwargs)\n frame = self._context.empty_table().select(compiled)\n table = _to_pyarrow_table(frame)\n return table[0][0].as_py()\n else:\n raise com.IbisError(\n f\"Cannot execute expression of type: {type(expr)}\"\n )\n\n def compile(\n self, expr: ir.Expr, params: Mapping[ir.Expr, object] = None, **kwargs\n ):\n return translate(expr)\n", "path": "ibis/backends/datafusion/__init__.py"}]} | 1,853 | 401 |
gh_patches_debug_12393 | rasdani/github-patches | git_diff | encode__httpx-2495 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
AsyncClient.request runtime error: "Attempted to send an sync request with an AsyncClient instance"
Ran into this issue as well. It was surprising to end up with a `RuntimeError: Attempted to send an sync request with an AsyncClient instance` error, when my actual issue had nothing to do with sync/async (in my case submitting the wrong type by accident through `data` kwarg). It feels like it might be a bug / that the type being submitted could be checked before trying to send the request?
### Discussed in https://github.com/encode/httpx/discussions/2339
<div type='discussions-op-text'>
<sup>Originally posted by **mdlincoln** August 16, 2022</sup>
I need to interact with an API that accepts `DELETE` requests requiring JSON content in the body. Since `AsyncClient`'s shortcut `delete()` method does not allow this, I followed the docs to instead use the `request()` method, but I received an unexpected error. Minimal example:
``` py
import asyncio
from httpx import AsyncClient
async_client = AsyncClient(
base_url="http://localhost",
)
async def test_request_method():
async with async_client as ac:
response = await ac.request(method="DELETE", url="/", content={"foo": "bar"})
asyncio.run(test_request_method())
```
this raises a `RuntimeError: Attempted to send an sync request with an AsyncClient instance.` (full traceback in the `<details>` below.)
Am I missing the right way for calling the `request()` method with an `AsyncClient`?
<details>
<pre>
Traceback (most recent call last):
File "*******/minimal.py", line 14, in <module>
asyncio.run(test_request_method())
File "/opt/homebrew/Cellar/[email protected]/3.9.13_3/Frameworks/Python.framework/Versions/3.9/lib/python3.9/asyncio/runners.py", line 44, in run
return loop.run_until_complete(main)
File "/opt/homebrew/Cellar/[email protected]/3.9.13_3/Frameworks/Python.framework/Versions/3.9/lib/python3.9/asyncio/base_events.py", line 647, in run_until_complete
return future.result()
File "*********minimal.py", line 11, in test_request_method
response = await ac.request(method="DELETE", url="/", content={"foo": "bar"})
File "*********/lib/python3.9/site-packages/httpx/_client.py", line 1527, in request
return await self.send(request, auth=auth, follow_redirects=follow_redirects)
File "*********/lib/python3.9/site-packages/httpx/_client.py", line 1614, in send
response = await self._send_handling_auth(
File "*********/lib/python3.9/site-packages/httpx/_client.py", line 1642, in _send_handling_auth
response = await self._send_handling_redirects(
File "*********/lib/python3.9/site-packages/httpx/_client.py", line 1679, in _send_handling_redirects
response = await self._send_single_request(request)
File "*********/lib/python3.9/site-packages/httpx/_client.py", line 1711, in _send_single_request
raise RuntimeError(
RuntimeError: Attempted to send an sync request with an AsyncClient instance.
</pre>
</details>
</div>
</issue>
<code>
[start of httpx/_content.py]
1 import inspect
2 import warnings
3 from json import dumps as json_dumps
4 from typing import (
5 Any,
6 AsyncIterable,
7 AsyncIterator,
8 Dict,
9 Iterable,
10 Iterator,
11 Mapping,
12 Optional,
13 Tuple,
14 Union,
15 )
16 from urllib.parse import urlencode
17
18 from ._exceptions import StreamClosed, StreamConsumed
19 from ._multipart import MultipartStream
20 from ._types import (
21 AsyncByteStream,
22 RequestContent,
23 RequestData,
24 RequestFiles,
25 ResponseContent,
26 SyncByteStream,
27 )
28 from ._utils import peek_filelike_length, primitive_value_to_str
29
30
31 class ByteStream(AsyncByteStream, SyncByteStream):
32 def __init__(self, stream: bytes) -> None:
33 self._stream = stream
34
35 def __iter__(self) -> Iterator[bytes]:
36 yield self._stream
37
38 async def __aiter__(self) -> AsyncIterator[bytes]:
39 yield self._stream
40
41
42 class IteratorByteStream(SyncByteStream):
43 CHUNK_SIZE = 65_536
44
45 def __init__(self, stream: Iterable[bytes]):
46 self._stream = stream
47 self._is_stream_consumed = False
48 self._is_generator = inspect.isgenerator(stream)
49
50 def __iter__(self) -> Iterator[bytes]:
51 if self._is_stream_consumed and self._is_generator:
52 raise StreamConsumed()
53
54 self._is_stream_consumed = True
55 if hasattr(self._stream, "read"):
56 # File-like interfaces should use 'read' directly.
57 chunk = self._stream.read(self.CHUNK_SIZE) # type: ignore
58 while chunk:
59 yield chunk
60 chunk = self._stream.read(self.CHUNK_SIZE) # type: ignore
61 else:
62 # Otherwise iterate.
63 for part in self._stream:
64 yield part
65
66
67 class AsyncIteratorByteStream(AsyncByteStream):
68 CHUNK_SIZE = 65_536
69
70 def __init__(self, stream: AsyncIterable[bytes]):
71 self._stream = stream
72 self._is_stream_consumed = False
73 self._is_generator = inspect.isasyncgen(stream)
74
75 async def __aiter__(self) -> AsyncIterator[bytes]:
76 if self._is_stream_consumed and self._is_generator:
77 raise StreamConsumed()
78
79 self._is_stream_consumed = True
80 if hasattr(self._stream, "aread"):
81 # File-like interfaces should use 'aread' directly.
82 chunk = await self._stream.aread(self.CHUNK_SIZE) # type: ignore
83 while chunk:
84 yield chunk
85 chunk = await self._stream.aread(self.CHUNK_SIZE) # type: ignore
86 else:
87 # Otherwise iterate.
88 async for part in self._stream:
89 yield part
90
91
92 class UnattachedStream(AsyncByteStream, SyncByteStream):
93 """
94 If a request or response is serialized using pickle, then it is no longer
95 attached to a stream for I/O purposes. Any stream operations should result
96 in `httpx.StreamClosed`.
97 """
98
99 def __iter__(self) -> Iterator[bytes]:
100 raise StreamClosed()
101
102 async def __aiter__(self) -> AsyncIterator[bytes]:
103 raise StreamClosed()
104 yield b"" # pragma: no cover
105
106
107 def encode_content(
108 content: Union[str, bytes, Iterable[bytes], AsyncIterable[bytes]]
109 ) -> Tuple[Dict[str, str], Union[SyncByteStream, AsyncByteStream]]:
110
111 if isinstance(content, (bytes, str)):
112 body = content.encode("utf-8") if isinstance(content, str) else content
113 content_length = len(body)
114 headers = {"Content-Length": str(content_length)} if body else {}
115 return headers, ByteStream(body)
116
117 elif isinstance(content, Iterable):
118 content_length_or_none = peek_filelike_length(content)
119
120 if content_length_or_none is None:
121 headers = {"Transfer-Encoding": "chunked"}
122 else:
123 headers = {"Content-Length": str(content_length_or_none)}
124 return headers, IteratorByteStream(content) # type: ignore
125
126 elif isinstance(content, AsyncIterable):
127 headers = {"Transfer-Encoding": "chunked"}
128 return headers, AsyncIteratorByteStream(content)
129
130 raise TypeError(f"Unexpected type for 'content', {type(content)!r}")
131
132
133 def encode_urlencoded_data(
134 data: RequestData,
135 ) -> Tuple[Dict[str, str], ByteStream]:
136 plain_data = []
137 for key, value in data.items():
138 if isinstance(value, (list, tuple)):
139 plain_data.extend([(key, primitive_value_to_str(item)) for item in value])
140 else:
141 plain_data.append((key, primitive_value_to_str(value)))
142 body = urlencode(plain_data, doseq=True).encode("utf-8")
143 content_length = str(len(body))
144 content_type = "application/x-www-form-urlencoded"
145 headers = {"Content-Length": content_length, "Content-Type": content_type}
146 return headers, ByteStream(body)
147
148
149 def encode_multipart_data(
150 data: RequestData, files: RequestFiles, boundary: Optional[bytes]
151 ) -> Tuple[Dict[str, str], MultipartStream]:
152 multipart = MultipartStream(data=data, files=files, boundary=boundary)
153 headers = multipart.get_headers()
154 return headers, multipart
155
156
157 def encode_text(text: str) -> Tuple[Dict[str, str], ByteStream]:
158 body = text.encode("utf-8")
159 content_length = str(len(body))
160 content_type = "text/plain; charset=utf-8"
161 headers = {"Content-Length": content_length, "Content-Type": content_type}
162 return headers, ByteStream(body)
163
164
165 def encode_html(html: str) -> Tuple[Dict[str, str], ByteStream]:
166 body = html.encode("utf-8")
167 content_length = str(len(body))
168 content_type = "text/html; charset=utf-8"
169 headers = {"Content-Length": content_length, "Content-Type": content_type}
170 return headers, ByteStream(body)
171
172
173 def encode_json(json: Any) -> Tuple[Dict[str, str], ByteStream]:
174 body = json_dumps(json).encode("utf-8")
175 content_length = str(len(body))
176 content_type = "application/json"
177 headers = {"Content-Length": content_length, "Content-Type": content_type}
178 return headers, ByteStream(body)
179
180
181 def encode_request(
182 content: Optional[RequestContent] = None,
183 data: Optional[RequestData] = None,
184 files: Optional[RequestFiles] = None,
185 json: Optional[Any] = None,
186 boundary: Optional[bytes] = None,
187 ) -> Tuple[Dict[str, str], Union[SyncByteStream, AsyncByteStream]]:
188 """
189 Handles encoding the given `content`, `data`, `files`, and `json`,
190 returning a two-tuple of (<headers>, <stream>).
191 """
192 if data is not None and not isinstance(data, Mapping):
193 # We prefer to separate `content=<bytes|str|byte iterator|bytes aiterator>`
194 # for raw request content, and `data=<form data>` for url encoded or
195 # multipart form content.
196 #
197 # However for compat with requests, we *do* still support
198 # `data=<bytes...>` usages. We deal with that case here, treating it
199 # as if `content=<...>` had been supplied instead.
200 message = "Use 'content=<...>' to upload raw bytes/text content."
201 warnings.warn(message, DeprecationWarning)
202 return encode_content(data)
203
204 if content is not None:
205 return encode_content(content)
206 elif files:
207 return encode_multipart_data(data or {}, files, boundary)
208 elif data:
209 return encode_urlencoded_data(data)
210 elif json is not None:
211 return encode_json(json)
212
213 return {}, ByteStream(b"")
214
215
216 def encode_response(
217 content: Optional[ResponseContent] = None,
218 text: Optional[str] = None,
219 html: Optional[str] = None,
220 json: Optional[Any] = None,
221 ) -> Tuple[Dict[str, str], Union[SyncByteStream, AsyncByteStream]]:
222 """
223 Handles encoding the given `content`, returning a two-tuple of
224 (<headers>, <stream>).
225 """
226 if content is not None:
227 return encode_content(content)
228 elif text is not None:
229 return encode_text(text)
230 elif html is not None:
231 return encode_html(html)
232 elif json is not None:
233 return encode_json(json)
234
235 return {}, ByteStream(b"")
236
[end of httpx/_content.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/httpx/_content.py b/httpx/_content.py
--- a/httpx/_content.py
+++ b/httpx/_content.py
@@ -114,7 +114,11 @@
headers = {"Content-Length": str(content_length)} if body else {}
return headers, ByteStream(body)
- elif isinstance(content, Iterable):
+ elif isinstance(content, Iterable) and not isinstance(content, dict):
+ # `not isinstance(content, dict)` is a bit oddly specific, but it
+ # catches a case that's easy for users to make in error, and would
+ # otherwise pass through here, like any other bytes-iterable,
+ # because `dict` happens to be iterable. See issue #2491.
content_length_or_none = peek_filelike_length(content)
if content_length_or_none is None:
| {"golden_diff": "diff --git a/httpx/_content.py b/httpx/_content.py\n--- a/httpx/_content.py\n+++ b/httpx/_content.py\n@@ -114,7 +114,11 @@\n headers = {\"Content-Length\": str(content_length)} if body else {}\n return headers, ByteStream(body)\n \n- elif isinstance(content, Iterable):\n+ elif isinstance(content, Iterable) and not isinstance(content, dict):\n+ # `not isinstance(content, dict)` is a bit oddly specific, but it\n+ # catches a case that's easy for users to make in error, and would\n+ # otherwise pass through here, like any other bytes-iterable,\n+ # because `dict` happens to be iterable. See issue #2491.\n content_length_or_none = peek_filelike_length(content)\n \n if content_length_or_none is None:\n", "issue": "AsyncClient.request runtime error: \"Attempted to send an sync request with an AsyncClient instance\"\nRan into this issue as well. It was surprising to end up with a `RuntimeError: Attempted to send an sync request with an AsyncClient instance` error, when my actual issue had nothing to do with sync/async (in my case submitting the wrong type by accident through `data` kwarg). It feels like it might be a bug / that the type being submitted could be checked before trying to send the request?\r\n\r\n### Discussed in https://github.com/encode/httpx/discussions/2339\r\n\r\n<div type='discussions-op-text'>\r\n\r\n<sup>Originally posted by **mdlincoln** August 16, 2022</sup>\r\nI need to interact with an API that accepts `DELETE` requests requiring JSON content in the body. Since `AsyncClient`'s shortcut `delete()` method does not allow this, I followed the docs to instead use the `request()` method, but I received an unexpected error. Minimal example:\r\n\r\n``` py\r\nimport asyncio\r\nfrom httpx import AsyncClient\r\n\r\nasync_client = AsyncClient(\r\n base_url=\"http://localhost\",\r\n)\r\n\r\nasync def test_request_method():\r\n async with async_client as ac:\r\n response = await ac.request(method=\"DELETE\", url=\"/\", content={\"foo\": \"bar\"})\r\n\r\nasyncio.run(test_request_method())\r\n```\r\n\r\nthis raises a `RuntimeError: Attempted to send an sync request with an AsyncClient instance.` (full traceback in the `<details>` below.)\r\n\r\nAm I missing the right way for calling the `request()` method with an `AsyncClient`?\r\n\r\n<details>\r\n<pre>\r\nTraceback (most recent call last):\r\n File \"*******/minimal.py\", line 14, in <module>\r\n asyncio.run(test_request_method())\r\n File \"/opt/homebrew/Cellar/[email protected]/3.9.13_3/Frameworks/Python.framework/Versions/3.9/lib/python3.9/asyncio/runners.py\", line 44, in run\r\n return loop.run_until_complete(main)\r\n File \"/opt/homebrew/Cellar/[email protected]/3.9.13_3/Frameworks/Python.framework/Versions/3.9/lib/python3.9/asyncio/base_events.py\", line 647, in run_until_complete\r\n return future.result()\r\n File \"*********minimal.py\", line 11, in test_request_method\r\n response = await ac.request(method=\"DELETE\", url=\"/\", content={\"foo\": \"bar\"})\r\n File \"*********/lib/python3.9/site-packages/httpx/_client.py\", line 1527, in request\r\n return await self.send(request, auth=auth, follow_redirects=follow_redirects)\r\n File \"*********/lib/python3.9/site-packages/httpx/_client.py\", line 1614, in send\r\n response = await self._send_handling_auth(\r\n File \"*********/lib/python3.9/site-packages/httpx/_client.py\", line 1642, in _send_handling_auth\r\n response = await self._send_handling_redirects(\r\n File \"*********/lib/python3.9/site-packages/httpx/_client.py\", line 1679, in _send_handling_redirects\r\n response = await self._send_single_request(request)\r\n File \"*********/lib/python3.9/site-packages/httpx/_client.py\", line 1711, in _send_single_request\r\n raise RuntimeError(\r\nRuntimeError: Attempted to send an sync request with an AsyncClient instance.\r\n</pre>\r\n</details>\r\n</div>\n", "before_files": [{"content": "import inspect\nimport warnings\nfrom json import dumps as json_dumps\nfrom typing import (\n Any,\n AsyncIterable,\n AsyncIterator,\n Dict,\n Iterable,\n Iterator,\n Mapping,\n Optional,\n Tuple,\n Union,\n)\nfrom urllib.parse import urlencode\n\nfrom ._exceptions import StreamClosed, StreamConsumed\nfrom ._multipart import MultipartStream\nfrom ._types import (\n AsyncByteStream,\n RequestContent,\n RequestData,\n RequestFiles,\n ResponseContent,\n SyncByteStream,\n)\nfrom ._utils import peek_filelike_length, primitive_value_to_str\n\n\nclass ByteStream(AsyncByteStream, SyncByteStream):\n def __init__(self, stream: bytes) -> None:\n self._stream = stream\n\n def __iter__(self) -> Iterator[bytes]:\n yield self._stream\n\n async def __aiter__(self) -> AsyncIterator[bytes]:\n yield self._stream\n\n\nclass IteratorByteStream(SyncByteStream):\n CHUNK_SIZE = 65_536\n\n def __init__(self, stream: Iterable[bytes]):\n self._stream = stream\n self._is_stream_consumed = False\n self._is_generator = inspect.isgenerator(stream)\n\n def __iter__(self) -> Iterator[bytes]:\n if self._is_stream_consumed and self._is_generator:\n raise StreamConsumed()\n\n self._is_stream_consumed = True\n if hasattr(self._stream, \"read\"):\n # File-like interfaces should use 'read' directly.\n chunk = self._stream.read(self.CHUNK_SIZE) # type: ignore\n while chunk:\n yield chunk\n chunk = self._stream.read(self.CHUNK_SIZE) # type: ignore\n else:\n # Otherwise iterate.\n for part in self._stream:\n yield part\n\n\nclass AsyncIteratorByteStream(AsyncByteStream):\n CHUNK_SIZE = 65_536\n\n def __init__(self, stream: AsyncIterable[bytes]):\n self._stream = stream\n self._is_stream_consumed = False\n self._is_generator = inspect.isasyncgen(stream)\n\n async def __aiter__(self) -> AsyncIterator[bytes]:\n if self._is_stream_consumed and self._is_generator:\n raise StreamConsumed()\n\n self._is_stream_consumed = True\n if hasattr(self._stream, \"aread\"):\n # File-like interfaces should use 'aread' directly.\n chunk = await self._stream.aread(self.CHUNK_SIZE) # type: ignore\n while chunk:\n yield chunk\n chunk = await self._stream.aread(self.CHUNK_SIZE) # type: ignore\n else:\n # Otherwise iterate.\n async for part in self._stream:\n yield part\n\n\nclass UnattachedStream(AsyncByteStream, SyncByteStream):\n \"\"\"\n If a request or response is serialized using pickle, then it is no longer\n attached to a stream for I/O purposes. Any stream operations should result\n in `httpx.StreamClosed`.\n \"\"\"\n\n def __iter__(self) -> Iterator[bytes]:\n raise StreamClosed()\n\n async def __aiter__(self) -> AsyncIterator[bytes]:\n raise StreamClosed()\n yield b\"\" # pragma: no cover\n\n\ndef encode_content(\n content: Union[str, bytes, Iterable[bytes], AsyncIterable[bytes]]\n) -> Tuple[Dict[str, str], Union[SyncByteStream, AsyncByteStream]]:\n\n if isinstance(content, (bytes, str)):\n body = content.encode(\"utf-8\") if isinstance(content, str) else content\n content_length = len(body)\n headers = {\"Content-Length\": str(content_length)} if body else {}\n return headers, ByteStream(body)\n\n elif isinstance(content, Iterable):\n content_length_or_none = peek_filelike_length(content)\n\n if content_length_or_none is None:\n headers = {\"Transfer-Encoding\": \"chunked\"}\n else:\n headers = {\"Content-Length\": str(content_length_or_none)}\n return headers, IteratorByteStream(content) # type: ignore\n\n elif isinstance(content, AsyncIterable):\n headers = {\"Transfer-Encoding\": \"chunked\"}\n return headers, AsyncIteratorByteStream(content)\n\n raise TypeError(f\"Unexpected type for 'content', {type(content)!r}\")\n\n\ndef encode_urlencoded_data(\n data: RequestData,\n) -> Tuple[Dict[str, str], ByteStream]:\n plain_data = []\n for key, value in data.items():\n if isinstance(value, (list, tuple)):\n plain_data.extend([(key, primitive_value_to_str(item)) for item in value])\n else:\n plain_data.append((key, primitive_value_to_str(value)))\n body = urlencode(plain_data, doseq=True).encode(\"utf-8\")\n content_length = str(len(body))\n content_type = \"application/x-www-form-urlencoded\"\n headers = {\"Content-Length\": content_length, \"Content-Type\": content_type}\n return headers, ByteStream(body)\n\n\ndef encode_multipart_data(\n data: RequestData, files: RequestFiles, boundary: Optional[bytes]\n) -> Tuple[Dict[str, str], MultipartStream]:\n multipart = MultipartStream(data=data, files=files, boundary=boundary)\n headers = multipart.get_headers()\n return headers, multipart\n\n\ndef encode_text(text: str) -> Tuple[Dict[str, str], ByteStream]:\n body = text.encode(\"utf-8\")\n content_length = str(len(body))\n content_type = \"text/plain; charset=utf-8\"\n headers = {\"Content-Length\": content_length, \"Content-Type\": content_type}\n return headers, ByteStream(body)\n\n\ndef encode_html(html: str) -> Tuple[Dict[str, str], ByteStream]:\n body = html.encode(\"utf-8\")\n content_length = str(len(body))\n content_type = \"text/html; charset=utf-8\"\n headers = {\"Content-Length\": content_length, \"Content-Type\": content_type}\n return headers, ByteStream(body)\n\n\ndef encode_json(json: Any) -> Tuple[Dict[str, str], ByteStream]:\n body = json_dumps(json).encode(\"utf-8\")\n content_length = str(len(body))\n content_type = \"application/json\"\n headers = {\"Content-Length\": content_length, \"Content-Type\": content_type}\n return headers, ByteStream(body)\n\n\ndef encode_request(\n content: Optional[RequestContent] = None,\n data: Optional[RequestData] = None,\n files: Optional[RequestFiles] = None,\n json: Optional[Any] = None,\n boundary: Optional[bytes] = None,\n) -> Tuple[Dict[str, str], Union[SyncByteStream, AsyncByteStream]]:\n \"\"\"\n Handles encoding the given `content`, `data`, `files`, and `json`,\n returning a two-tuple of (<headers>, <stream>).\n \"\"\"\n if data is not None and not isinstance(data, Mapping):\n # We prefer to separate `content=<bytes|str|byte iterator|bytes aiterator>`\n # for raw request content, and `data=<form data>` for url encoded or\n # multipart form content.\n #\n # However for compat with requests, we *do* still support\n # `data=<bytes...>` usages. We deal with that case here, treating it\n # as if `content=<...>` had been supplied instead.\n message = \"Use 'content=<...>' to upload raw bytes/text content.\"\n warnings.warn(message, DeprecationWarning)\n return encode_content(data)\n\n if content is not None:\n return encode_content(content)\n elif files:\n return encode_multipart_data(data or {}, files, boundary)\n elif data:\n return encode_urlencoded_data(data)\n elif json is not None:\n return encode_json(json)\n\n return {}, ByteStream(b\"\")\n\n\ndef encode_response(\n content: Optional[ResponseContent] = None,\n text: Optional[str] = None,\n html: Optional[str] = None,\n json: Optional[Any] = None,\n) -> Tuple[Dict[str, str], Union[SyncByteStream, AsyncByteStream]]:\n \"\"\"\n Handles encoding the given `content`, returning a two-tuple of\n (<headers>, <stream>).\n \"\"\"\n if content is not None:\n return encode_content(content)\n elif text is not None:\n return encode_text(text)\n elif html is not None:\n return encode_html(html)\n elif json is not None:\n return encode_json(json)\n\n return {}, ByteStream(b\"\")\n", "path": "httpx/_content.py"}]} | 3,759 | 190 |
gh_patches_debug_21943 | rasdani/github-patches | git_diff | redis__redis-py-846 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
redis._compat: global name 'InterruptedError' is not defined
In the [compat module](https://github.com/andymccurdy/redis-py/blob/master/redis/_compat.py), this code is broken:
```python
# For Python older than 3.5, retry EINTR.
if sys.version_info[0] < 3 or (sys.version_info[0] == 3 and
sys.version_info[1] < 5):
# Adapted from https://bugs.python.org/review/23863/patch/14532/54418
import socket
import time
import errno
from select import select as _select
def select(rlist, wlist, xlist, timeout):
while True:
try:
return _select(rlist, wlist, xlist, timeout)
except InterruptedError:
continue
```
The problem is that it uses `InterruptedError`, but this exception only exists in Python 3, not Python 2.
</issue>
<code>
[start of redis/_compat.py]
1 """Internal module for Python 2 backwards compatibility."""
2 import sys
3
4 # For Python older than 3.5, retry EINTR.
5 if sys.version_info[0] < 3 or (sys.version_info[0] == 3 and
6 sys.version_info[1] < 5):
7 # Adapted from https://bugs.python.org/review/23863/patch/14532/54418
8 import socket
9 import time
10 import errno
11
12 from select import select as _select
13
14 def select(rlist, wlist, xlist, timeout):
15 while True:
16 try:
17 return _select(rlist, wlist, xlist, timeout)
18 except InterruptedError:
19 continue
20
21 # Wrapper for handling interruptable system calls.
22 def _retryable_call(s, func, *args, **kwargs):
23 # Some modules (SSL) use the _fileobject wrapper directly and
24 # implement a smaller portion of the socket interface, thus we
25 # need to let them continue to do so.
26 timeout, deadline = None, 0.0
27 attempted = False
28 try:
29 timeout = s.gettimeout()
30 except AttributeError:
31 pass
32
33 if timeout:
34 deadline = time.time() + timeout
35
36 try:
37 while True:
38 if attempted and timeout:
39 now = time.time()
40 if now >= deadline:
41 raise socket.error(errno.EWOULDBLOCK, "timed out")
42 else:
43 # Overwrite the timeout on the socket object
44 # to take into account elapsed time.
45 s.settimeout(deadline - now)
46 try:
47 attempted = True
48 return func(*args, **kwargs)
49 except socket.error as e:
50 if e.args[0] == errno.EINTR:
51 continue
52 raise
53 finally:
54 # Set the existing timeout back for future
55 # calls.
56 if timeout:
57 s.settimeout(timeout)
58
59 def recv(sock, *args, **kwargs):
60 return _retryable_call(sock, sock.recv, *args, **kwargs)
61
62 def recv_into(sock, *args, **kwargs):
63 return _retryable_call(sock, sock.recv_into, *args, **kwargs)
64
65 else: # Python 3.5 and above automatically retry EINTR
66 from select import select
67
68 def recv(sock, *args, **kwargs):
69 return sock.recv(*args, **kwargs)
70
71 def recv_into(sock, *args, **kwargs):
72 return sock.recv_into(*args, **kwargs)
73
74 if sys.version_info[0] < 3:
75 from urllib import unquote
76 from urlparse import parse_qs, urlparse
77 from itertools import imap, izip
78 from string import letters as ascii_letters
79 from Queue import Queue
80 try:
81 from cStringIO import StringIO as BytesIO
82 except ImportError:
83 from StringIO import StringIO as BytesIO
84
85 # special unicode handling for python2 to avoid UnicodeDecodeError
86 def safe_unicode(obj, *args):
87 """ return the unicode representation of obj """
88 try:
89 return unicode(obj, *args)
90 except UnicodeDecodeError:
91 # obj is byte string
92 ascii_text = str(obj).encode('string_escape')
93 return unicode(ascii_text)
94
95 def iteritems(x):
96 return x.iteritems()
97
98 def iterkeys(x):
99 return x.iterkeys()
100
101 def itervalues(x):
102 return x.itervalues()
103
104 def nativestr(x):
105 return x if isinstance(x, str) else x.encode('utf-8', 'replace')
106
107 def u(x):
108 return x.decode()
109
110 def b(x):
111 return x
112
113 def next(x):
114 return x.next()
115
116 def byte_to_chr(x):
117 return x
118
119 unichr = unichr
120 xrange = xrange
121 basestring = basestring
122 unicode = unicode
123 bytes = str
124 long = long
125 else:
126 from urllib.parse import parse_qs, unquote, urlparse
127 from io import BytesIO
128 from string import ascii_letters
129 from queue import Queue
130
131 def iteritems(x):
132 return iter(x.items())
133
134 def iterkeys(x):
135 return iter(x.keys())
136
137 def itervalues(x):
138 return iter(x.values())
139
140 def byte_to_chr(x):
141 return chr(x)
142
143 def nativestr(x):
144 return x if isinstance(x, str) else x.decode('utf-8', 'replace')
145
146 def u(x):
147 return x
148
149 def b(x):
150 return x.encode('latin-1') if not isinstance(x, bytes) else x
151
152 next = next
153 unichr = chr
154 imap = map
155 izip = zip
156 xrange = range
157 basestring = str
158 unicode = str
159 safe_unicode = str
160 bytes = bytes
161 long = int
162
163 try: # Python 3
164 from queue import LifoQueue, Empty, Full
165 except ImportError:
166 from Queue import Empty, Full
167 try: # Python 2.6 - 2.7
168 from Queue import LifoQueue
169 except ImportError: # Python 2.5
170 from Queue import Queue
171 # From the Python 2.7 lib. Python 2.5 already extracted the core
172 # methods to aid implementating different queue organisations.
173
174 class LifoQueue(Queue):
175 "Override queue methods to implement a last-in first-out queue."
176
177 def _init(self, maxsize):
178 self.maxsize = maxsize
179 self.queue = []
180
181 def _qsize(self, len=len):
182 return len(self.queue)
183
184 def _put(self, item):
185 self.queue.append(item)
186
187 def _get(self):
188 return self.queue.pop()
189
[end of redis/_compat.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/redis/_compat.py b/redis/_compat.py
--- a/redis/_compat.py
+++ b/redis/_compat.py
@@ -1,6 +1,12 @@
"""Internal module for Python 2 backwards compatibility."""
+import errno
import sys
+try:
+ InterruptedError = InterruptedError
+except:
+ InterruptedError = OSError
+
# For Python older than 3.5, retry EINTR.
if sys.version_info[0] < 3 or (sys.version_info[0] == 3 and
sys.version_info[1] < 5):
@@ -15,8 +21,12 @@
while True:
try:
return _select(rlist, wlist, xlist, timeout)
- except InterruptedError:
- continue
+ except InterruptedError as e:
+ # Python 2 does not define InterruptedError, instead
+ # try to catch an OSError with errno == EINTR == 4.
+ if getattr(e, 'errno', None) == getattr(errno, 'EINTR', 4):
+ continue
+ raise
# Wrapper for handling interruptable system calls.
def _retryable_call(s, func, *args, **kwargs):
| {"golden_diff": "diff --git a/redis/_compat.py b/redis/_compat.py\n--- a/redis/_compat.py\n+++ b/redis/_compat.py\n@@ -1,6 +1,12 @@\n \"\"\"Internal module for Python 2 backwards compatibility.\"\"\"\n+import errno\n import sys\n \n+try:\n+ InterruptedError = InterruptedError\n+except:\n+ InterruptedError = OSError\n+\n # For Python older than 3.5, retry EINTR.\n if sys.version_info[0] < 3 or (sys.version_info[0] == 3 and\n sys.version_info[1] < 5):\n@@ -15,8 +21,12 @@\n while True:\n try:\n return _select(rlist, wlist, xlist, timeout)\n- except InterruptedError:\n- continue\n+ except InterruptedError as e:\n+ # Python 2 does not define InterruptedError, instead\n+ # try to catch an OSError with errno == EINTR == 4.\n+ if getattr(e, 'errno', None) == getattr(errno, 'EINTR', 4):\n+ continue\n+ raise\n \n # Wrapper for handling interruptable system calls.\n def _retryable_call(s, func, *args, **kwargs):\n", "issue": "redis._compat: global name 'InterruptedError' is not defined\nIn the [compat module](https://github.com/andymccurdy/redis-py/blob/master/redis/_compat.py), this code is broken:\r\n```python\r\n# For Python older than 3.5, retry EINTR.\r\nif sys.version_info[0] < 3 or (sys.version_info[0] == 3 and\r\n sys.version_info[1] < 5):\r\n # Adapted from https://bugs.python.org/review/23863/patch/14532/54418\r\n import socket\r\n import time\r\n import errno\r\n\r\n from select import select as _select\r\n\r\n def select(rlist, wlist, xlist, timeout):\r\n while True:\r\n try:\r\n return _select(rlist, wlist, xlist, timeout)\r\n except InterruptedError:\r\n continue\r\n```\r\n\r\nThe problem is that it uses `InterruptedError`, but this exception only exists in Python 3, not Python 2.\n", "before_files": [{"content": "\"\"\"Internal module for Python 2 backwards compatibility.\"\"\"\nimport sys\n\n# For Python older than 3.5, retry EINTR.\nif sys.version_info[0] < 3 or (sys.version_info[0] == 3 and\n sys.version_info[1] < 5):\n # Adapted from https://bugs.python.org/review/23863/patch/14532/54418\n import socket\n import time\n import errno\n\n from select import select as _select\n\n def select(rlist, wlist, xlist, timeout):\n while True:\n try:\n return _select(rlist, wlist, xlist, timeout)\n except InterruptedError:\n continue\n\n # Wrapper for handling interruptable system calls.\n def _retryable_call(s, func, *args, **kwargs):\n # Some modules (SSL) use the _fileobject wrapper directly and\n # implement a smaller portion of the socket interface, thus we\n # need to let them continue to do so.\n timeout, deadline = None, 0.0\n attempted = False\n try:\n timeout = s.gettimeout()\n except AttributeError:\n pass\n\n if timeout:\n deadline = time.time() + timeout\n\n try:\n while True:\n if attempted and timeout:\n now = time.time()\n if now >= deadline:\n raise socket.error(errno.EWOULDBLOCK, \"timed out\")\n else:\n # Overwrite the timeout on the socket object\n # to take into account elapsed time.\n s.settimeout(deadline - now)\n try:\n attempted = True\n return func(*args, **kwargs)\n except socket.error as e:\n if e.args[0] == errno.EINTR:\n continue\n raise\n finally:\n # Set the existing timeout back for future\n # calls.\n if timeout:\n s.settimeout(timeout)\n\n def recv(sock, *args, **kwargs):\n return _retryable_call(sock, sock.recv, *args, **kwargs)\n\n def recv_into(sock, *args, **kwargs):\n return _retryable_call(sock, sock.recv_into, *args, **kwargs)\n\nelse: # Python 3.5 and above automatically retry EINTR\n from select import select\n\n def recv(sock, *args, **kwargs):\n return sock.recv(*args, **kwargs)\n\n def recv_into(sock, *args, **kwargs):\n return sock.recv_into(*args, **kwargs)\n\nif sys.version_info[0] < 3:\n from urllib import unquote\n from urlparse import parse_qs, urlparse\n from itertools import imap, izip\n from string import letters as ascii_letters\n from Queue import Queue\n try:\n from cStringIO import StringIO as BytesIO\n except ImportError:\n from StringIO import StringIO as BytesIO\n\n # special unicode handling for python2 to avoid UnicodeDecodeError\n def safe_unicode(obj, *args):\n \"\"\" return the unicode representation of obj \"\"\"\n try:\n return unicode(obj, *args)\n except UnicodeDecodeError:\n # obj is byte string\n ascii_text = str(obj).encode('string_escape')\n return unicode(ascii_text)\n\n def iteritems(x):\n return x.iteritems()\n\n def iterkeys(x):\n return x.iterkeys()\n\n def itervalues(x):\n return x.itervalues()\n\n def nativestr(x):\n return x if isinstance(x, str) else x.encode('utf-8', 'replace')\n\n def u(x):\n return x.decode()\n\n def b(x):\n return x\n\n def next(x):\n return x.next()\n\n def byte_to_chr(x):\n return x\n\n unichr = unichr\n xrange = xrange\n basestring = basestring\n unicode = unicode\n bytes = str\n long = long\nelse:\n from urllib.parse import parse_qs, unquote, urlparse\n from io import BytesIO\n from string import ascii_letters\n from queue import Queue\n\n def iteritems(x):\n return iter(x.items())\n\n def iterkeys(x):\n return iter(x.keys())\n\n def itervalues(x):\n return iter(x.values())\n\n def byte_to_chr(x):\n return chr(x)\n\n def nativestr(x):\n return x if isinstance(x, str) else x.decode('utf-8', 'replace')\n\n def u(x):\n return x\n\n def b(x):\n return x.encode('latin-1') if not isinstance(x, bytes) else x\n\n next = next\n unichr = chr\n imap = map\n izip = zip\n xrange = range\n basestring = str\n unicode = str\n safe_unicode = str\n bytes = bytes\n long = int\n\ntry: # Python 3\n from queue import LifoQueue, Empty, Full\nexcept ImportError:\n from Queue import Empty, Full\n try: # Python 2.6 - 2.7\n from Queue import LifoQueue\n except ImportError: # Python 2.5\n from Queue import Queue\n # From the Python 2.7 lib. Python 2.5 already extracted the core\n # methods to aid implementating different queue organisations.\n\n class LifoQueue(Queue):\n \"Override queue methods to implement a last-in first-out queue.\"\n\n def _init(self, maxsize):\n self.maxsize = maxsize\n self.queue = []\n\n def _qsize(self, len=len):\n return len(self.queue)\n\n def _put(self, item):\n self.queue.append(item)\n\n def _get(self):\n return self.queue.pop()\n", "path": "redis/_compat.py"}]} | 2,476 | 276 |
gh_patches_debug_2007 | rasdani/github-patches | git_diff | googleapis__google-cloud-python-5683 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Release 'datastore 1.7.0'
Major changes are:
- Add support for Python 3.7.
- Drop support for Python 3.4.
- Bugfix: query offsets (#4675).
</issue>
<code>
[start of datastore/setup.py]
1 # Copyright 2018 Google LLC
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14
15 import io
16 import os
17
18 import setuptools
19
20
21 # Package metadata.
22
23 name = 'google-cloud-datastore'
24 description = 'Google Cloud Datastore API client library'
25 version = '1.6.0'
26 # Should be one of:
27 # 'Development Status :: 3 - Alpha'
28 # 'Development Status :: 4 - Beta'
29 # 'Development Status :: 5 - Production/Stable'
30 release_status = 'Development Status :: 5 - Production/Stable'
31 dependencies = [
32 'google-cloud-core<0.29dev,>=0.28.0',
33 'google-api-core[grpc]<2.0.0dev,>=1.0.0',
34 ]
35 extras = {
36 }
37
38
39 # Setup boilerplate below this line.
40
41 package_root = os.path.abspath(os.path.dirname(__file__))
42
43 readme_filename = os.path.join(package_root, 'README.rst')
44 with io.open(readme_filename, encoding='utf-8') as readme_file:
45 readme = readme_file.read()
46
47 # Only include packages under the 'google' namespace. Do not include tests,
48 # benchmarks, etc.
49 packages = [
50 package for package in setuptools.find_packages()
51 if package.startswith('google')]
52
53 # Determine which namespaces are needed.
54 namespaces = ['google']
55 if 'google.cloud' in packages:
56 namespaces.append('google.cloud')
57
58
59 setuptools.setup(
60 name=name,
61 version=version,
62 description=description,
63 long_description=readme,
64 author='Google LLC',
65 author_email='[email protected]',
66 license='Apache 2.0',
67 url='https://github.com/GoogleCloudPlatform/google-cloud-python',
68 classifiers=[
69 release_status,
70 'Intended Audience :: Developers',
71 'License :: OSI Approved :: Apache Software License',
72 'Programming Language :: Python',
73 'Programming Language :: Python :: 2',
74 'Programming Language :: Python :: 2.7',
75 'Programming Language :: Python :: 3',
76 'Programming Language :: Python :: 3.4',
77 'Programming Language :: Python :: 3.5',
78 'Programming Language :: Python :: 3.6',
79 'Operating System :: OS Independent',
80 'Topic :: Internet',
81 ],
82 platforms='Posix; MacOS X; Windows',
83 packages=packages,
84 namespace_packages=namespaces,
85 install_requires=dependencies,
86 extras_require=extras,
87 include_package_data=True,
88 zip_safe=False,
89 )
90
[end of datastore/setup.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/datastore/setup.py b/datastore/setup.py
--- a/datastore/setup.py
+++ b/datastore/setup.py
@@ -22,7 +22,7 @@
name = 'google-cloud-datastore'
description = 'Google Cloud Datastore API client library'
-version = '1.6.0'
+version = '1.7.0'
# Should be one of:
# 'Development Status :: 3 - Alpha'
# 'Development Status :: 4 - Beta'
| {"golden_diff": "diff --git a/datastore/setup.py b/datastore/setup.py\n--- a/datastore/setup.py\n+++ b/datastore/setup.py\n@@ -22,7 +22,7 @@\n \n name = 'google-cloud-datastore'\n description = 'Google Cloud Datastore API client library'\n-version = '1.6.0'\n+version = '1.7.0'\n # Should be one of:\n # 'Development Status :: 3 - Alpha'\n # 'Development Status :: 4 - Beta'\n", "issue": "Release 'datastore 1.7.0'\nMajor changes are:\r\n\r\n- Add support for Python 3.7.\r\n- Drop support for Python 3.4.\r\n- Bugfix: query offsets (#4675).\n", "before_files": [{"content": "# Copyright 2018 Google LLC\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport io\nimport os\n\nimport setuptools\n\n\n# Package metadata.\n\nname = 'google-cloud-datastore'\ndescription = 'Google Cloud Datastore API client library'\nversion = '1.6.0'\n# Should be one of:\n# 'Development Status :: 3 - Alpha'\n# 'Development Status :: 4 - Beta'\n# 'Development Status :: 5 - Production/Stable'\nrelease_status = 'Development Status :: 5 - Production/Stable'\ndependencies = [\n 'google-cloud-core<0.29dev,>=0.28.0',\n 'google-api-core[grpc]<2.0.0dev,>=1.0.0',\n]\nextras = {\n}\n\n\n# Setup boilerplate below this line.\n\npackage_root = os.path.abspath(os.path.dirname(__file__))\n\nreadme_filename = os.path.join(package_root, 'README.rst')\nwith io.open(readme_filename, encoding='utf-8') as readme_file:\n readme = readme_file.read()\n\n# Only include packages under the 'google' namespace. Do not include tests,\n# benchmarks, etc.\npackages = [\n package for package in setuptools.find_packages()\n if package.startswith('google')]\n\n# Determine which namespaces are needed.\nnamespaces = ['google']\nif 'google.cloud' in packages:\n namespaces.append('google.cloud')\n\n\nsetuptools.setup(\n name=name,\n version=version,\n description=description,\n long_description=readme,\n author='Google LLC',\n author_email='[email protected]',\n license='Apache 2.0',\n url='https://github.com/GoogleCloudPlatform/google-cloud-python',\n classifiers=[\n release_status,\n 'Intended Audience :: Developers',\n 'License :: OSI Approved :: Apache Software License',\n 'Programming Language :: Python',\n 'Programming Language :: Python :: 2',\n 'Programming Language :: Python :: 2.7',\n 'Programming Language :: Python :: 3',\n 'Programming Language :: Python :: 3.4',\n 'Programming Language :: Python :: 3.5',\n 'Programming Language :: Python :: 3.6',\n 'Operating System :: OS Independent',\n 'Topic :: Internet',\n ],\n platforms='Posix; MacOS X; Windows',\n packages=packages,\n namespace_packages=namespaces,\n install_requires=dependencies,\n extras_require=extras,\n include_package_data=True,\n zip_safe=False,\n)\n", "path": "datastore/setup.py"}]} | 1,388 | 105 |
gh_patches_debug_2550 | rasdani/github-patches | git_diff | semgrep__semgrep-rules-1051 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
python tempfile-without-flush: Don't require .write() for exception?
**Describe the bug**
The `python.lang.correctness.tempfile.flush.tempfile-without-flush` rule has [exceptions](https://github.com/returntocorp/semgrep-rules/blob/35e9f350a5d0190c936502fff179ba2c465c4438/python/lang/correctness/tempfile/flush.yaml#L5-L20) if `.write()` and then `.close()` or `.flush()` is used on a tempfile. However, this doesn't cover code which calls `.close()` immediately, without writing:
```
$ semgrep --config=p/r2c-ci --verbose test.py
[...]
severity:error rule:python.lang.correctness.tempfile.flush.tempfile-without-flush: possibly missing a .flush() or .close() call to temporary file handle; file may or may not exist when handle.name is used
3:handle = tempfile.NamedTemporaryFile(delete=False)
4:handle.close()
5:print(handle.name)
```
**To Reproduce**
```python3
import tempfile
handle = tempfile.NamedTemporaryFile(delete=False)
handle.close()
print(handle.name)
```
**Expected behavior**
It seems to me like the exception should trigger whenever `.close()` is invoked, no matter if `.write()` is called before that or not?
python tempfile-without-flush: Don't require .write() for exception?
**Describe the bug**
The `python.lang.correctness.tempfile.flush.tempfile-without-flush` rule has [exceptions](https://github.com/returntocorp/semgrep-rules/blob/35e9f350a5d0190c936502fff179ba2c465c4438/python/lang/correctness/tempfile/flush.yaml#L5-L20) if `.write()` and then `.close()` or `.flush()` is used on a tempfile. However, this doesn't cover code which calls `.close()` immediately, without writing:
```
$ semgrep --config=p/r2c-ci --verbose test.py
[...]
severity:error rule:python.lang.correctness.tempfile.flush.tempfile-without-flush: possibly missing a .flush() or .close() call to temporary file handle; file may or may not exist when handle.name is used
3:handle = tempfile.NamedTemporaryFile(delete=False)
4:handle.close()
5:print(handle.name)
```
**To Reproduce**
```python3
import tempfile
handle = tempfile.NamedTemporaryFile(delete=False)
handle.close()
print(handle.name)
```
**Expected behavior**
It seems to me like the exception should trigger whenever `.close()` is invoked, no matter if `.write()` is called before that or not?
</issue>
<code>
[start of python/lang/correctness/tempfile/flush.py]
1 import tempfile
2
3 import at
4 import tf
5
6
7 def main():
8 with tempfile.NamedTemporaryFile("w") as fout:
9 debug_print(astr)
10 fout.write(astr)
11 # ok:tempfile-without-flush
12 fout.flush()
13 cmd = [binary_name, fout.name, *[str(path) for path in targets]]
14
15
16 def main_b():
17 with tempfile.NamedTemporaryFile("w") as fout:
18 debug_print(astr)
19 fout.write(astr)
20 # ok:tempfile-without-flush
21 fout.close()
22 cmd = [binary_name, fout.name, *[str(path) for path in targets]]
23
24
25 def main_c():
26 with tempfile.NamedTemporaryFile("w") as fout:
27 debug_print(astr)
28 fout.write(astr)
29
30 # ok:tempfile-without-flush
31 cmd = [binary_name, fout.name, *[str(path) for path in targets]]
32
33
34 def main_c():
35 with tempfile.NamedTemporaryFile("w") as fout:
36 debug_print(astr)
37 fout.write(astr)
38 debug_print('wrote file')
39
40 # ruleid:tempfile-without-flush
41 cmd = [binary_name, fout.name, *[str(path) for path in targets]]
42
43
44 def main_d():
45 fout = tempfile.NamedTemporaryFile('w')
46 debug_print(astr)
47 fout.write(astr)
48
49 # ruleid:tempfile-without-flush
50 fout.name
51 # ruleid:tempfile-without-flush
52 cmd = [binary_name, fout.name, *[str(path) for path in targets]]
53
54
55 def main_e():
56 fout = tempfile.NamedTemporaryFile('w')
57 debug_print(astr)
58 fout.write(astr)
59
60 # ruleid:tempfile-without-flush
61 print(fout.name)
62 # ruleid:tempfile-without-flush
63 cmd = [binary_name, fout.name, *[str(path) for path in targets]]
64
[end of python/lang/correctness/tempfile/flush.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/python/lang/correctness/tempfile/flush.py b/python/lang/correctness/tempfile/flush.py
--- a/python/lang/correctness/tempfile/flush.py
+++ b/python/lang/correctness/tempfile/flush.py
@@ -61,3 +61,12 @@
print(fout.name)
# ruleid:tempfile-without-flush
cmd = [binary_name, fout.name, *[str(path) for path in targets]]
+
+
+def main_f():
+ fout = tempfile.NamedTemporaryFile('w', delete=False)
+ debug_print(astr)
+ fout.close()
+
+ # ok:tempfile-without-flush
+ print(fout.name)
| {"golden_diff": "diff --git a/python/lang/correctness/tempfile/flush.py b/python/lang/correctness/tempfile/flush.py\n--- a/python/lang/correctness/tempfile/flush.py\n+++ b/python/lang/correctness/tempfile/flush.py\n@@ -61,3 +61,12 @@\n print(fout.name)\n # ruleid:tempfile-without-flush\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n+\n+\n+def main_f():\n+ fout = tempfile.NamedTemporaryFile('w', delete=False)\n+ debug_print(astr)\n+ fout.close()\n+\n+ # ok:tempfile-without-flush\n+ print(fout.name)\n", "issue": "python tempfile-without-flush: Don't require .write() for exception?\n**Describe the bug**\r\nThe `python.lang.correctness.tempfile.flush.tempfile-without-flush` rule has [exceptions](https://github.com/returntocorp/semgrep-rules/blob/35e9f350a5d0190c936502fff179ba2c465c4438/python/lang/correctness/tempfile/flush.yaml#L5-L20) if `.write()` and then `.close()` or `.flush()` is used on a tempfile. However, this doesn't cover code which calls `.close()` immediately, without writing:\r\n\r\n```\r\n$ semgrep --config=p/r2c-ci --verbose test.py\r\n[...]\r\nseverity:error rule:python.lang.correctness.tempfile.flush.tempfile-without-flush: possibly missing a .flush() or .close() call to temporary file handle; file may or may not exist when handle.name is used\r\n3:handle = tempfile.NamedTemporaryFile(delete=False)\r\n4:handle.close()\r\n5:print(handle.name)\r\n```\r\n\r\n**To Reproduce**\r\n```python3\r\nimport tempfile\r\n\r\nhandle = tempfile.NamedTemporaryFile(delete=False)\r\nhandle.close()\r\nprint(handle.name)\r\n```\r\n\r\n**Expected behavior**\r\nIt seems to me like the exception should trigger whenever `.close()` is invoked, no matter if `.write()` is called before that or not?\npython tempfile-without-flush: Don't require .write() for exception?\n**Describe the bug**\r\nThe `python.lang.correctness.tempfile.flush.tempfile-without-flush` rule has [exceptions](https://github.com/returntocorp/semgrep-rules/blob/35e9f350a5d0190c936502fff179ba2c465c4438/python/lang/correctness/tempfile/flush.yaml#L5-L20) if `.write()` and then `.close()` or `.flush()` is used on a tempfile. However, this doesn't cover code which calls `.close()` immediately, without writing:\r\n\r\n```\r\n$ semgrep --config=p/r2c-ci --verbose test.py\r\n[...]\r\nseverity:error rule:python.lang.correctness.tempfile.flush.tempfile-without-flush: possibly missing a .flush() or .close() call to temporary file handle; file may or may not exist when handle.name is used\r\n3:handle = tempfile.NamedTemporaryFile(delete=False)\r\n4:handle.close()\r\n5:print(handle.name)\r\n```\r\n\r\n**To Reproduce**\r\n```python3\r\nimport tempfile\r\n\r\nhandle = tempfile.NamedTemporaryFile(delete=False)\r\nhandle.close()\r\nprint(handle.name)\r\n```\r\n\r\n**Expected behavior**\r\nIt seems to me like the exception should trigger whenever `.close()` is invoked, no matter if `.write()` is called before that or not?\n", "before_files": [{"content": "import tempfile\n\nimport at\nimport tf\n\n\ndef main():\n with tempfile.NamedTemporaryFile(\"w\") as fout:\n debug_print(astr)\n fout.write(astr)\n # ok:tempfile-without-flush\n fout.flush()\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n\n\ndef main_b():\n with tempfile.NamedTemporaryFile(\"w\") as fout:\n debug_print(astr)\n fout.write(astr)\n # ok:tempfile-without-flush\n fout.close()\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n\n\ndef main_c():\n with tempfile.NamedTemporaryFile(\"w\") as fout:\n debug_print(astr)\n fout.write(astr)\n\n # ok:tempfile-without-flush\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n\n\ndef main_c():\n with tempfile.NamedTemporaryFile(\"w\") as fout:\n debug_print(astr)\n fout.write(astr)\n debug_print('wrote file')\n\n # ruleid:tempfile-without-flush\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n\n\ndef main_d():\n fout = tempfile.NamedTemporaryFile('w')\n debug_print(astr)\n fout.write(astr)\n\n # ruleid:tempfile-without-flush\n fout.name\n # ruleid:tempfile-without-flush\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n\n\ndef main_e():\n fout = tempfile.NamedTemporaryFile('w')\n debug_print(astr)\n fout.write(astr)\n\n # ruleid:tempfile-without-flush\n print(fout.name)\n # ruleid:tempfile-without-flush\n cmd = [binary_name, fout.name, *[str(path) for path in targets]]\n", "path": "python/lang/correctness/tempfile/flush.py"}]} | 1,685 | 153 |
gh_patches_debug_14362 | rasdani/github-patches | git_diff | python-poetry__poetry-620 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Arbitrary equality in pip freeze causes crash
<!--
Hi there! Thank you for discovering and submitting an issue.
Before you submit this; let's make sure of a few things.
Please make sure the following boxes are ticked if they are correct.
If not, please try and fulfill these first.
-->
<!-- Checked checkbox should look like this: [x] -->
- [ x] I am on the [latest](https://github.com/sdispater/poetry/releases/latest) Poetry version.
- [x ] I have searched the [issues](https://github.com/sdispater/poetry/issues) of this repo and believe that this is not a duplicate.
- [x ] If an exception occurs when executing a command, I executed it again in debug mode (`-vvv` option).
<!--
Once those are done, if you're able to fill in the following list with your information,
it'd be very helpful to whoever handles the issue.
-->
- **MacOS High Sierra 10.13.6**: <!-- Replace with version + name -->
- **Poetry 0.11.5**: <!-- Replace with version -->
## Issue
<!-- Now feel free to write your issue, but please be descriptive! Thanks again 🙌 ❤️ -->
Running `poetry install` when a package is installed such that pip freeze lists it with an arbitrary equality operator (ex. `package===1.6.1-642-g1e03d5e853`) causes an exception
```
[ValueError]
Unable to parse "=1.6.1-642-g1e03d5e853".
```
Looks like the issue is the strict splitting on `==` in `poetry/repositories/installed_repository.py`.
</issue>
<code>
[start of poetry/repositories/installed_repository.py]
1 from poetry.packages import Package
2 from poetry.utils.env import Env
3
4 from .repository import Repository
5
6
7 class InstalledRepository(Repository):
8 @classmethod
9 def load(cls, env): # type: (Env) -> InstalledRepository
10 """
11 Load installed packages.
12
13 For now, it uses the pip "freeze" command.
14 """
15 repo = cls()
16
17 freeze_output = env.run("pip", "freeze")
18 for line in freeze_output.split("\n"):
19 if "==" in line:
20 name, version = line.split("==")
21 repo.add_package(Package(name, version, version))
22 elif line.startswith("-e "):
23 line = line[3:].strip()
24 if line.startswith("git+"):
25 url = line.lstrip("git+")
26 if "@" in url:
27 url, rev = url.rsplit("@", 1)
28 else:
29 rev = "master"
30
31 name = url.split("/")[-1].rstrip(".git")
32 if "#egg=" in rev:
33 rev, name = rev.split("#egg=")
34
35 package = Package(name, "0.0.0")
36 package.source_type = "git"
37 package.source_url = url
38 package.source_reference = rev
39
40 repo.add_package(package)
41
42 return repo
43
[end of poetry/repositories/installed_repository.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/poetry/repositories/installed_repository.py b/poetry/repositories/installed_repository.py
--- a/poetry/repositories/installed_repository.py
+++ b/poetry/repositories/installed_repository.py
@@ -1,3 +1,5 @@
+import re
+
from poetry.packages import Package
from poetry.utils.env import Env
@@ -17,7 +19,7 @@
freeze_output = env.run("pip", "freeze")
for line in freeze_output.split("\n"):
if "==" in line:
- name, version = line.split("==")
+ name, version = re.split("={2,3}", line)
repo.add_package(Package(name, version, version))
elif line.startswith("-e "):
line = line[3:].strip()
| {"golden_diff": "diff --git a/poetry/repositories/installed_repository.py b/poetry/repositories/installed_repository.py\n--- a/poetry/repositories/installed_repository.py\n+++ b/poetry/repositories/installed_repository.py\n@@ -1,3 +1,5 @@\n+import re\n+\n from poetry.packages import Package\n from poetry.utils.env import Env\n \n@@ -17,7 +19,7 @@\n freeze_output = env.run(\"pip\", \"freeze\")\n for line in freeze_output.split(\"\\n\"):\n if \"==\" in line:\n- name, version = line.split(\"==\")\n+ name, version = re.split(\"={2,3}\", line)\n repo.add_package(Package(name, version, version))\n elif line.startswith(\"-e \"):\n line = line[3:].strip()\n", "issue": "Arbitrary equality in pip freeze causes crash\n<!--\r\n Hi there! Thank you for discovering and submitting an issue.\r\n\r\n Before you submit this; let's make sure of a few things.\r\n Please make sure the following boxes are ticked if they are correct.\r\n If not, please try and fulfill these first.\r\n-->\r\n\r\n<!-- Checked checkbox should look like this: [x] -->\r\n- [ x] I am on the [latest](https://github.com/sdispater/poetry/releases/latest) Poetry version.\r\n- [x ] I have searched the [issues](https://github.com/sdispater/poetry/issues) of this repo and believe that this is not a duplicate.\r\n- [x ] If an exception occurs when executing a command, I executed it again in debug mode (`-vvv` option).\r\n\r\n<!--\r\n Once those are done, if you're able to fill in the following list with your information,\r\n it'd be very helpful to whoever handles the issue.\r\n-->\r\n\r\n- **MacOS High Sierra 10.13.6**: <!-- Replace with version + name -->\r\n- **Poetry 0.11.5**: <!-- Replace with version -->\r\n\r\n## Issue\r\n<!-- Now feel free to write your issue, but please be descriptive! Thanks again \ud83d\ude4c \u2764\ufe0f -->\r\nRunning `poetry install` when a package is installed such that pip freeze lists it with an arbitrary equality operator (ex. `package===1.6.1-642-g1e03d5e853`) causes an exception\r\n\r\n```\r\n[ValueError]\r\nUnable to parse \"=1.6.1-642-g1e03d5e853\".\r\n```\r\n\r\nLooks like the issue is the strict splitting on `==` in `poetry/repositories/installed_repository.py`.\r\n\n", "before_files": [{"content": "from poetry.packages import Package\nfrom poetry.utils.env import Env\n\nfrom .repository import Repository\n\n\nclass InstalledRepository(Repository):\n @classmethod\n def load(cls, env): # type: (Env) -> InstalledRepository\n \"\"\"\n Load installed packages.\n\n For now, it uses the pip \"freeze\" command.\n \"\"\"\n repo = cls()\n\n freeze_output = env.run(\"pip\", \"freeze\")\n for line in freeze_output.split(\"\\n\"):\n if \"==\" in line:\n name, version = line.split(\"==\")\n repo.add_package(Package(name, version, version))\n elif line.startswith(\"-e \"):\n line = line[3:].strip()\n if line.startswith(\"git+\"):\n url = line.lstrip(\"git+\")\n if \"@\" in url:\n url, rev = url.rsplit(\"@\", 1)\n else:\n rev = \"master\"\n\n name = url.split(\"/\")[-1].rstrip(\".git\")\n if \"#egg=\" in rev:\n rev, name = rev.split(\"#egg=\")\n\n package = Package(name, \"0.0.0\")\n package.source_type = \"git\"\n package.source_url = url\n package.source_reference = rev\n\n repo.add_package(package)\n\n return repo\n", "path": "poetry/repositories/installed_repository.py"}]} | 1,272 | 174 |
gh_patches_debug_94 | rasdani/github-patches | git_diff | open-mmlab__mmsegmentation-658 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
error in train.py
error in line 134 in mmsegmentation/tools/train.py
model.init_weights() is error
model.init_weight() is ok
</issue>
<code>
[start of mmseg/__init__.py]
1 import mmcv
2
3 from .version import __version__, version_info
4
5 MMCV_MIN = '1.3.1'
6 MMCV_MAX = '1.4.0'
7
8
9 def digit_version(version_str):
10 digit_version = []
11 for x in version_str.split('.'):
12 if x.isdigit():
13 digit_version.append(int(x))
14 elif x.find('rc') != -1:
15 patch_version = x.split('rc')
16 digit_version.append(int(patch_version[0]) - 1)
17 digit_version.append(int(patch_version[1]))
18 return digit_version
19
20
21 mmcv_min_version = digit_version(MMCV_MIN)
22 mmcv_max_version = digit_version(MMCV_MAX)
23 mmcv_version = digit_version(mmcv.__version__)
24
25
26 assert (mmcv_min_version <= mmcv_version <= mmcv_max_version), \
27 f'MMCV=={mmcv.__version__} is used but incompatible. ' \
28 f'Please install mmcv>={mmcv_min_version}, <={mmcv_max_version}.'
29
30 __all__ = ['__version__', 'version_info']
31
[end of mmseg/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/mmseg/__init__.py b/mmseg/__init__.py
--- a/mmseg/__init__.py
+++ b/mmseg/__init__.py
@@ -2,7 +2,7 @@
from .version import __version__, version_info
-MMCV_MIN = '1.3.1'
+MMCV_MIN = '1.3.7'
MMCV_MAX = '1.4.0'
| {"golden_diff": "diff --git a/mmseg/__init__.py b/mmseg/__init__.py\n--- a/mmseg/__init__.py\n+++ b/mmseg/__init__.py\n@@ -2,7 +2,7 @@\n \n from .version import __version__, version_info\n \n-MMCV_MIN = '1.3.1'\n+MMCV_MIN = '1.3.7'\n MMCV_MAX = '1.4.0'\n", "issue": "error in train.py\nerror in line 134 in mmsegmentation/tools/train.py \r\nmodel.init_weights() is error \r\nmodel.init_weight() is ok\r\n\n", "before_files": [{"content": "import mmcv\n\nfrom .version import __version__, version_info\n\nMMCV_MIN = '1.3.1'\nMMCV_MAX = '1.4.0'\n\n\ndef digit_version(version_str):\n digit_version = []\n for x in version_str.split('.'):\n if x.isdigit():\n digit_version.append(int(x))\n elif x.find('rc') != -1:\n patch_version = x.split('rc')\n digit_version.append(int(patch_version[0]) - 1)\n digit_version.append(int(patch_version[1]))\n return digit_version\n\n\nmmcv_min_version = digit_version(MMCV_MIN)\nmmcv_max_version = digit_version(MMCV_MAX)\nmmcv_version = digit_version(mmcv.__version__)\n\n\nassert (mmcv_min_version <= mmcv_version <= mmcv_max_version), \\\n f'MMCV=={mmcv.__version__} is used but incompatible. ' \\\n f'Please install mmcv>={mmcv_min_version}, <={mmcv_max_version}.'\n\n__all__ = ['__version__', 'version_info']\n", "path": "mmseg/__init__.py"}]} | 858 | 92 |
gh_patches_debug_31137 | rasdani/github-patches | git_diff | googleapis__google-cloud-python-2761 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Vision: if one of RGB values for dominant color is absent, should default to 0
If you can provide us with as much of the following information as possible it
will help us identify the cause of your issue more quickly.
1. OS type and version
macOS Sierra 10.12.1
2. Python version and virtual environment information `python --version`
```
$ python --version
Python 2.7.12
```
3. google-cloud-python version `pip show google-cloud`, `pip show google-<service>` or `pip freeze`
```
$ pip freeze | grep google
google-cloud-core==0.21.0
google-cloud-vision==0.21.0
googleapis-common-protos==1.5.0
```
4. Stacktrace if available
```
Traceback (most recent call last):
File "getpalette.py", line 108, in <module>
main(args.images)
File "getpalette.py", line 97, in main
pixelfy(image_path)
File "getpalette.py", line 58, in pixelfy
properties = image.detect_properties()
File "/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/image.py", line 189, in detect_properties
return self._detect_annotation(features)
File "/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/image.py", line 125, in _detect_annotation
_entity_from_response_type(feature.feature_type, results))
File "/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/image.py", line 229, in _entity_from_response_type
ImagePropertiesAnnotation.from_api_repr(results[feature_key]))
File "/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/color.py", line 40, in from_api_repr
response['dominantColors']['colors']]
File "/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/color.py", line 160, in from_api_repr
color = Color.from_api_repr(response['color'])
File "/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/color.py", line 90, in from_api_repr
blue = response['blue']
KeyError: 'blue'
```
5. Steps to reproduce
Run the code example against the following image. `python getpalette.py cat.png`
Photo by [Chen YiZhou](https://stock.tookapic.com/photos/73879)
6. Code example `getpalette.py`
```
# Copyright 2016 Google Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from __future__ import division
from __future__ import print_function
import argparse
import io
import os
import os.path
from google.cloud import vision
from PIL import Image
def resize(size, max_dimension=500):
width, height = size
if width < height:
return (int((width / height) * max_dimension), max_dimension)
return (max_dimension, int((height / width) * max_dimension))
def pixelfy(image_path):
print(image_path)
vision_client = vision.Client()
im = Image.open(image_path)
im = im.resize(resize(im.size), resample=Image.LANCZOS)
f = io.BytesIO()
im.save(f, format='jpeg')
image = vision_client.image(content=f.getvalue())
properties = image.detect_properties()
palette = []
for property_ in properties:
for color in property_.colors:
palette.append(
(
color.color.red,
color.color.green,
color.color.blue,
))
print(palette)
def main(image_paths):
for image_path in image_paths:
pixelfy(image_path)
if __name__ == '__main__':
parser = argparse.ArgumentParser(
description=__doc__,
formatter_class=argparse.RawDescriptionHelpFormatter)
parser.add_argument('images', help='Path to image(s) to get palette.', nargs='+')
args = parser.parse_args()
main(args.images)
```
</issue>
<code>
[start of vision/google/cloud/vision/color.py]
1 # Copyright 2016 Google Inc.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14
15 """Image properties class representation derived from Vision API response."""
16
17
18 class ImagePropertiesAnnotation(object):
19 """Representation of image properties
20
21 :type colors: list
22 :param colors: List of
23 :class:`~google.cloud.vision.color.ColorInformation`.
24 """
25 def __init__(self, colors):
26 self._colors = colors
27
28 @classmethod
29 def from_api_repr(cls, response):
30 """Factory: construct ``ImagePropertiesAnnotation`` from a response.
31
32 :type response: dict
33 :param response: Dictionary response from Vision API with image
34 properties data.
35
36 :rtype: :class:`~google.cloud.vision.color.ImagePropertiesAnnotation`.
37 :returns: Populated instance of ``ImagePropertiesAnnotation``.
38 """
39 colors = [ColorInformation.from_api_repr(color) for color in
40 response['dominantColors']['colors']]
41 return cls(colors)
42
43 @property
44 def colors(self):
45 """Colors in an image.
46
47 :rtype: list of :class:`~google.cloud.vision.color.ColorInformation`
48 :returns: Populated list of ``ColorInformation``.
49 """
50 return self._colors
51
52
53 class Color(object):
54 """Representation of RGBA color information.
55
56 :type red: int
57 :param red: The amount of red in the color as a value in the interval
58 [0, 255].
59
60 :type green: int
61 :param green: The amount of green in the color as a value in the interval
62 [0, 255].
63
64 :type blue: int
65 :param blue: The amount of blue in the color as a value in the interval
66 [0, 255].
67
68 :type alpha: float
69 :param alpha: The fraction of this color that should be applied to the
70 pixel.
71 """
72 def __init__(self, red, green, blue, alpha):
73 self._red = red
74 self._green = green
75 self._blue = blue
76 self._alpha = alpha
77
78 @classmethod
79 def from_api_repr(cls, response):
80 """Factory: construct a ``Color`` from a Vision API response.
81
82 :type response: dict
83 :param response: Color from API Response.
84
85 :rtype: :class:`~google.cloud.vision.color.Color`
86 :returns: Instance of :class:`~google.cloud.vision.color.Color`.
87 """
88 red = response['red']
89 green = response['green']
90 blue = response['blue']
91 alpha = response.get('alpha')
92
93 return cls(red, green, blue, alpha)
94
95 @property
96 def red(self):
97 """Red component of the color.
98
99 :rtype: int
100 :returns: Red RGB value.
101 """
102 return self._red
103
104 @property
105 def green(self):
106 """Green component of the color.
107
108 :rtype: int
109 :returns: Green RGB value.
110 """
111 return self._green
112
113 @property
114 def blue(self):
115 """Blue component of the color.
116
117 :rtype: int
118 :returns: Blue RGB value.
119 """
120 return self._blue
121
122 @property
123 def alpha(self):
124 """Alpha transparency level.
125
126 :rtype: float
127 :returns: Alpha transparency level.
128 """
129 return self._alpha
130
131
132 class ColorInformation(object):
133 """Representation of color information from API response.
134
135 :type color: :class:`~google.cloud.vision.color.Color`
136 :param color: RGB components of the color.
137
138 :type score: float
139 :param score: Image-specific score for this color. Value in range [0, 1].
140
141 :type pixel_fraction: float
142 :param pixel_fraction: Stores the fraction of pixels the color occupies in
143 the image. Value in range [0, 1].
144 """
145 def __init__(self, color, score, pixel_fraction):
146 self._color = color
147 self._score = score
148 self._pixel_fraction = pixel_fraction
149
150 @classmethod
151 def from_api_repr(cls, response):
152 """Factory: construct ``ColorInformation`` for a color found.
153
154 :type response: dict
155 :param response: Color data with extra meta information.
156
157 :rtype: :class:`~google.cloud.vision.color.ColorInformation`
158 :returns: Instance of ``ColorInformation``.
159 """
160 color = Color.from_api_repr(response['color'])
161 score = response['score']
162 pixel_fraction = response['pixelFraction']
163
164 return cls(color, score, pixel_fraction)
165
166 @property
167 def color(self):
168 """RGB components of the color.
169
170 :rtype: :class:`~google.vision.color.Color`
171 :returns: Instance of ``Color``.
172 """
173 return self._color
174
175 @property
176 def score(self):
177 """Image-specific score for this color. Value in range [0, 1].
178
179 :rtype: float
180 :returns: Image score for this color.
181 """
182 return self._score
183
184 @property
185 def pixel_fraction(self):
186 """Stores the fraction of pixels the color occupies in the image.
187
188 :rtype: float
189 :returns: Pixel fraction value in range [0, 1].
190 """
191 return self._pixel_fraction
192
[end of vision/google/cloud/vision/color.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/vision/google/cloud/vision/color.py b/vision/google/cloud/vision/color.py
--- a/vision/google/cloud/vision/color.py
+++ b/vision/google/cloud/vision/color.py
@@ -36,8 +36,9 @@
:rtype: :class:`~google.cloud.vision.color.ImagePropertiesAnnotation`.
:returns: Populated instance of ``ImagePropertiesAnnotation``.
"""
- colors = [ColorInformation.from_api_repr(color) for color in
- response['dominantColors']['colors']]
+ raw_colors = response.get('dominantColors', {}).get('colors', ())
+ colors = [ColorInformation.from_api_repr(color)
+ for color in raw_colors]
return cls(colors)
@property
@@ -85,10 +86,10 @@
:rtype: :class:`~google.cloud.vision.color.Color`
:returns: Instance of :class:`~google.cloud.vision.color.Color`.
"""
- red = response['red']
- green = response['green']
- blue = response['blue']
- alpha = response.get('alpha')
+ red = response.get('red', 0)
+ green = response.get('green', 0)
+ blue = response.get('blue', 0)
+ alpha = response.get('alpha', 0.0)
return cls(red, green, blue, alpha)
@@ -157,9 +158,9 @@
:rtype: :class:`~google.cloud.vision.color.ColorInformation`
:returns: Instance of ``ColorInformation``.
"""
- color = Color.from_api_repr(response['color'])
- score = response['score']
- pixel_fraction = response['pixelFraction']
+ color = Color.from_api_repr(response.get('color'))
+ score = response.get('score')
+ pixel_fraction = response.get('pixelFraction')
return cls(color, score, pixel_fraction)
| {"golden_diff": "diff --git a/vision/google/cloud/vision/color.py b/vision/google/cloud/vision/color.py\n--- a/vision/google/cloud/vision/color.py\n+++ b/vision/google/cloud/vision/color.py\n@@ -36,8 +36,9 @@\n :rtype: :class:`~google.cloud.vision.color.ImagePropertiesAnnotation`.\n :returns: Populated instance of ``ImagePropertiesAnnotation``.\n \"\"\"\n- colors = [ColorInformation.from_api_repr(color) for color in\n- response['dominantColors']['colors']]\n+ raw_colors = response.get('dominantColors', {}).get('colors', ())\n+ colors = [ColorInformation.from_api_repr(color)\n+ for color in raw_colors]\n return cls(colors)\n \n @property\n@@ -85,10 +86,10 @@\n :rtype: :class:`~google.cloud.vision.color.Color`\n :returns: Instance of :class:`~google.cloud.vision.color.Color`.\n \"\"\"\n- red = response['red']\n- green = response['green']\n- blue = response['blue']\n- alpha = response.get('alpha')\n+ red = response.get('red', 0)\n+ green = response.get('green', 0)\n+ blue = response.get('blue', 0)\n+ alpha = response.get('alpha', 0.0)\n \n return cls(red, green, blue, alpha)\n \n@@ -157,9 +158,9 @@\n :rtype: :class:`~google.cloud.vision.color.ColorInformation`\n :returns: Instance of ``ColorInformation``.\n \"\"\"\n- color = Color.from_api_repr(response['color'])\n- score = response['score']\n- pixel_fraction = response['pixelFraction']\n+ color = Color.from_api_repr(response.get('color'))\n+ score = response.get('score')\n+ pixel_fraction = response.get('pixelFraction')\n \n return cls(color, score, pixel_fraction)\n", "issue": "Vision: if one of RGB values for dominant color is absent, should default to 0\n\r\nIf you can provide us with as much of the following information as possible it\r\nwill help us identify the cause of your issue more quickly.\r\n\r\n1. OS type and version\r\n\r\n macOS Sierra 10.12.1\r\n\r\n2. Python version and virtual environment information `python --version`\r\n\r\n ```\r\n $ python --version\r\n Python 2.7.12\r\n ```\r\n\r\n3. google-cloud-python version `pip show google-cloud`, `pip show google-<service>` or `pip freeze`\r\n\r\n ```\r\n $ pip freeze | grep google\r\n google-cloud-core==0.21.0\r\n google-cloud-vision==0.21.0\r\n googleapis-common-protos==1.5.0\r\n ```\r\n4. Stacktrace if available\r\n\r\n ```\r\n Traceback (most recent call last):\r\n File \"getpalette.py\", line 108, in <module>\r\n main(args.images)\r\n File \"getpalette.py\", line 97, in main\r\n pixelfy(image_path)\r\n File \"getpalette.py\", line 58, in pixelfy\r\n properties = image.detect_properties()\r\n File \"/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/image.py\", line 189, in detect_properties\r\n return self._detect_annotation(features)\r\n File \"/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/image.py\", line 125, in _detect_annotation\r\n _entity_from_response_type(feature.feature_type, results))\r\n File \"/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/image.py\", line 229, in _entity_from_response_type\r\n ImagePropertiesAnnotation.from_api_repr(results[feature_key]))\r\n File \"/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/color.py\", line 40, in from_api_repr\r\n response['dominantColors']['colors']]\r\n File \"/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/color.py\", line 160, in from_api_repr\r\n color = Color.from_api_repr(response['color'])\r\n File \"/Users/swast/venvs/cloud-vision/lib/python2.7/site-packages/google/cloud/vision/color.py\", line 90, in from_api_repr\r\n blue = response['blue']\r\n KeyError: 'blue'\r\n ```\r\n\r\n5. Steps to reproduce\r\n\r\n Run the code example against the following image. `python getpalette.py cat.png`\r\n\r\n \r\n\r\n Photo by [Chen YiZhou](https://stock.tookapic.com/photos/73879)\r\n\r\n6. Code example `getpalette.py`\r\n\r\n```\r\n# Copyright 2016 Google Inc.\r\n#\r\n# Licensed under the Apache License, Version 2.0 (the \"License\");\r\n# you may not use this file except in compliance with the License.\r\n# You may obtain a copy of the License at\r\n#\r\n# http://www.apache.org/licenses/LICENSE-2.0\r\n#\r\n# Unless required by applicable law or agreed to in writing, software\r\n# distributed under the License is distributed on an \"AS IS\" BASIS,\r\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\r\n# See the License for the specific language governing permissions and\r\n# limitations under the License.\r\n\r\nfrom __future__ import division\r\nfrom __future__ import print_function\r\n\r\nimport argparse\r\nimport io\r\nimport os\r\nimport os.path\r\n\r\nfrom google.cloud import vision\r\nfrom PIL import Image\r\n\r\n\r\ndef resize(size, max_dimension=500):\r\n width, height = size\r\n if width < height:\r\n return (int((width / height) * max_dimension), max_dimension)\r\n return (max_dimension, int((height / width) * max_dimension))\r\n\r\n\r\ndef pixelfy(image_path):\r\n print(image_path)\r\n vision_client = vision.Client()\r\n im = Image.open(image_path)\r\n im = im.resize(resize(im.size), resample=Image.LANCZOS)\r\n f = io.BytesIO()\r\n im.save(f, format='jpeg')\r\n image = vision_client.image(content=f.getvalue())\r\n properties = image.detect_properties()\r\n palette = []\r\n\r\n for property_ in properties:\r\n for color in property_.colors:\r\n palette.append(\r\n (\r\n color.color.red,\r\n color.color.green,\r\n color.color.blue,\r\n ))\r\n print(palette)\r\n\r\n\r\ndef main(image_paths):\r\n for image_path in image_paths:\r\n pixelfy(image_path)\r\n\r\n\r\nif __name__ == '__main__':\r\n parser = argparse.ArgumentParser(\r\n description=__doc__,\r\n formatter_class=argparse.RawDescriptionHelpFormatter)\r\n parser.add_argument('images', help='Path to image(s) to get palette.', nargs='+')\r\n\r\n args = parser.parse_args()\r\n\r\n main(args.images)\r\n```\n", "before_files": [{"content": "# Copyright 2016 Google Inc.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\n\"\"\"Image properties class representation derived from Vision API response.\"\"\"\n\n\nclass ImagePropertiesAnnotation(object):\n \"\"\"Representation of image properties\n\n :type colors: list\n :param colors: List of\n :class:`~google.cloud.vision.color.ColorInformation`.\n \"\"\"\n def __init__(self, colors):\n self._colors = colors\n\n @classmethod\n def from_api_repr(cls, response):\n \"\"\"Factory: construct ``ImagePropertiesAnnotation`` from a response.\n\n :type response: dict\n :param response: Dictionary response from Vision API with image\n properties data.\n\n :rtype: :class:`~google.cloud.vision.color.ImagePropertiesAnnotation`.\n :returns: Populated instance of ``ImagePropertiesAnnotation``.\n \"\"\"\n colors = [ColorInformation.from_api_repr(color) for color in\n response['dominantColors']['colors']]\n return cls(colors)\n\n @property\n def colors(self):\n \"\"\"Colors in an image.\n\n :rtype: list of :class:`~google.cloud.vision.color.ColorInformation`\n :returns: Populated list of ``ColorInformation``.\n \"\"\"\n return self._colors\n\n\nclass Color(object):\n \"\"\"Representation of RGBA color information.\n\n :type red: int\n :param red: The amount of red in the color as a value in the interval\n [0, 255].\n\n :type green: int\n :param green: The amount of green in the color as a value in the interval\n [0, 255].\n\n :type blue: int\n :param blue: The amount of blue in the color as a value in the interval\n [0, 255].\n\n :type alpha: float\n :param alpha: The fraction of this color that should be applied to the\n pixel.\n \"\"\"\n def __init__(self, red, green, blue, alpha):\n self._red = red\n self._green = green\n self._blue = blue\n self._alpha = alpha\n\n @classmethod\n def from_api_repr(cls, response):\n \"\"\"Factory: construct a ``Color`` from a Vision API response.\n\n :type response: dict\n :param response: Color from API Response.\n\n :rtype: :class:`~google.cloud.vision.color.Color`\n :returns: Instance of :class:`~google.cloud.vision.color.Color`.\n \"\"\"\n red = response['red']\n green = response['green']\n blue = response['blue']\n alpha = response.get('alpha')\n\n return cls(red, green, blue, alpha)\n\n @property\n def red(self):\n \"\"\"Red component of the color.\n\n :rtype: int\n :returns: Red RGB value.\n \"\"\"\n return self._red\n\n @property\n def green(self):\n \"\"\"Green component of the color.\n\n :rtype: int\n :returns: Green RGB value.\n \"\"\"\n return self._green\n\n @property\n def blue(self):\n \"\"\"Blue component of the color.\n\n :rtype: int\n :returns: Blue RGB value.\n \"\"\"\n return self._blue\n\n @property\n def alpha(self):\n \"\"\"Alpha transparency level.\n\n :rtype: float\n :returns: Alpha transparency level.\n \"\"\"\n return self._alpha\n\n\nclass ColorInformation(object):\n \"\"\"Representation of color information from API response.\n\n :type color: :class:`~google.cloud.vision.color.Color`\n :param color: RGB components of the color.\n\n :type score: float\n :param score: Image-specific score for this color. Value in range [0, 1].\n\n :type pixel_fraction: float\n :param pixel_fraction: Stores the fraction of pixels the color occupies in\n the image. Value in range [0, 1].\n \"\"\"\n def __init__(self, color, score, pixel_fraction):\n self._color = color\n self._score = score\n self._pixel_fraction = pixel_fraction\n\n @classmethod\n def from_api_repr(cls, response):\n \"\"\"Factory: construct ``ColorInformation`` for a color found.\n\n :type response: dict\n :param response: Color data with extra meta information.\n\n :rtype: :class:`~google.cloud.vision.color.ColorInformation`\n :returns: Instance of ``ColorInformation``.\n \"\"\"\n color = Color.from_api_repr(response['color'])\n score = response['score']\n pixel_fraction = response['pixelFraction']\n\n return cls(color, score, pixel_fraction)\n\n @property\n def color(self):\n \"\"\"RGB components of the color.\n\n :rtype: :class:`~google.vision.color.Color`\n :returns: Instance of ``Color``.\n \"\"\"\n return self._color\n\n @property\n def score(self):\n \"\"\"Image-specific score for this color. Value in range [0, 1].\n\n :rtype: float\n :returns: Image score for this color.\n \"\"\"\n return self._score\n\n @property\n def pixel_fraction(self):\n \"\"\"Stores the fraction of pixels the color occupies in the image.\n\n :rtype: float\n :returns: Pixel fraction value in range [0, 1].\n \"\"\"\n return self._pixel_fraction\n", "path": "vision/google/cloud/vision/color.py"}]} | 3,407 | 420 |
gh_patches_debug_15143 | rasdani/github-patches | git_diff | vyperlang__vyper-1393 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
External Call to Struct not working
### Version Information
* vyper Version (output of `vyper --version`): 0.1.0b8
* OS: osx
* Python Version (output of `python --version`): 3.7.1
### What's your issue about?
I am unable to interact with structs in 1 contract (let’s call it contract A) that I get as a return value from a function in another contract (let’s call it contract B).
For example, I’m defining the struct in both contract A and B as follows:
```
struct Model:
x: timedelta
y: uint256
```
The function (in contract B) that returns the struct is this:
```
@public
@constant
def getModel(_model: address) -> Model:
return self.models[_model]
```
I can pull it into contract A like this and have it compile successfully:
```
contract B:
def getModel(_model: address) -> Model: constant
```
But when I try to interact with the members of the struct (i.e. x and y), like this:
```
m: uint256 = B(self.b).getModel(self.model).y
```
I get a compilation error saying `Invalid output type: struct`. Any idea why this would be happening (why it would compile fine when declaring the contract at the top but failing in the function body)?
</issue>
<code>
[start of vyper/parser/external_call.py]
1 import ast
2
3 from vyper.exceptions import (
4 FunctionDeclarationException,
5 StructureException,
6 TypeMismatchException,
7 VariableDeclarationException,
8 )
9 from vyper.parser.lll_node import (
10 LLLnode,
11 )
12 from vyper.parser.parser_utils import (
13 getpos,
14 pack_arguments,
15 unwrap_location,
16 )
17 from vyper.types import (
18 BaseType,
19 ByteArrayLike,
20 TupleType,
21 get_size_of_type,
22 )
23
24
25 def external_contract_call(node,
26 context,
27 contract_name,
28 contract_address,
29 pos,
30 value=None,
31 gas=None):
32 from vyper.parser.parser import parse_expr
33 if value is None:
34 value = 0
35 if gas is None:
36 gas = 'gas'
37 if not contract_name:
38 raise StructureException(
39 f'Invalid external contract call "{node.func.attr}".',
40 node
41 )
42 if contract_name not in context.sigs:
43 raise VariableDeclarationException(
44 f'Contract "{contract_name}" not declared yet',
45 node
46 )
47 method_name = node.func.attr
48 if method_name not in context.sigs[contract_name]:
49 raise FunctionDeclarationException(
50 (
51 "Function not declared yet: %s (reminder: "
52 "function must be declared in the correct contract)"
53 " The available methods are: %s"
54 ) % (method_name, ",".join(context.sigs[contract_name].keys())),
55 node.func
56 )
57 sig = context.sigs[contract_name][method_name]
58 inargs, inargsize, _ = pack_arguments(
59 sig,
60 [parse_expr(arg, context) for arg in node.args],
61 context,
62 pos=pos,
63 )
64 output_placeholder, output_size, returner = get_external_contract_call_output(sig, context)
65 sub = [
66 'seq',
67 ['assert', ['extcodesize', contract_address]],
68 ['assert', ['ne', 'address', contract_address]],
69 ]
70 if context.is_constant() or sig.const:
71 sub.append([
72 'assert',
73 [
74 'staticcall',
75 gas, contract_address, inargs, inargsize, output_placeholder, output_size,
76 ]
77 ])
78 else:
79 sub.append([
80 'assert',
81 [
82 'call',
83 gas, contract_address, value, inargs, inargsize, output_placeholder, output_size,
84 ]
85 ])
86 sub.extend(returner)
87 o = LLLnode.from_list(sub, typ=sig.output_type, location='memory', pos=getpos(node))
88 return o
89
90
91 def get_external_contract_call_output(sig, context):
92 if not sig.output_type:
93 return 0, 0, []
94 output_placeholder = context.new_placeholder(typ=sig.output_type)
95 output_size = get_size_of_type(sig.output_type) * 32
96 if isinstance(sig.output_type, BaseType):
97 returner = [0, output_placeholder]
98 elif isinstance(sig.output_type, ByteArrayLike):
99 returner = [0, output_placeholder + 32]
100 elif isinstance(sig.output_type, TupleType):
101 returner = [0, output_placeholder]
102 else:
103 raise TypeMismatchException("Invalid output type: %s" % sig.output_type)
104 return output_placeholder, output_size, returner
105
106
107 def get_external_contract_keywords(stmt_expr, context):
108 from vyper.parser.expr import Expr
109 value, gas = None, None
110 for kw in stmt_expr.keywords:
111 if kw.arg not in ('value', 'gas'):
112 raise TypeMismatchException(
113 'Invalid keyword argument, only "gas" and "value" supported.',
114 stmt_expr,
115 )
116 elif kw.arg == 'gas':
117 gas = Expr.parse_value_expr(kw.value, context)
118 elif kw.arg == 'value':
119 value = Expr.parse_value_expr(kw.value, context)
120 return value, gas
121
122
123 def make_external_call(stmt_expr, context):
124 from vyper.parser.expr import Expr
125 value, gas = get_external_contract_keywords(stmt_expr, context)
126
127 if isinstance(stmt_expr.func, ast.Attribute) and isinstance(stmt_expr.func.value, ast.Call):
128 contract_name = stmt_expr.func.value.func.id
129 contract_address = Expr.parse_value_expr(stmt_expr.func.value.args[0], context)
130
131 return external_contract_call(
132 stmt_expr,
133 context,
134 contract_name,
135 contract_address,
136 pos=getpos(stmt_expr),
137 value=value,
138 gas=gas,
139 )
140
141 elif isinstance(stmt_expr.func.value, ast.Attribute) and stmt_expr.func.value.attr in context.sigs: # noqa: E501
142 contract_name = stmt_expr.func.value.attr
143 var = context.globals[stmt_expr.func.value.attr]
144 contract_address = unwrap_location(LLLnode.from_list(
145 var.pos,
146 typ=var.typ,
147 location='storage',
148 pos=getpos(stmt_expr),
149 annotation='self.' + stmt_expr.func.value.attr,
150 ))
151
152 return external_contract_call(
153 stmt_expr,
154 context,
155 contract_name,
156 contract_address,
157 pos=getpos(stmt_expr),
158 value=value,
159 gas=gas,
160 )
161
162 elif isinstance(stmt_expr.func.value, ast.Attribute) and stmt_expr.func.value.attr in context.globals: # noqa: E501
163 contract_name = context.globals[stmt_expr.func.value.attr].typ.unit
164 var = context.globals[stmt_expr.func.value.attr]
165 contract_address = unwrap_location(LLLnode.from_list(
166 var.pos,
167 typ=var.typ,
168 location='storage',
169 pos=getpos(stmt_expr),
170 annotation='self.' + stmt_expr.func.value.attr,
171 ))
172
173 return external_contract_call(
174 stmt_expr,
175 context,
176 contract_name,
177 contract_address,
178 pos=getpos(stmt_expr),
179 value=value,
180 gas=gas,
181 )
182
183 else:
184 raise StructureException("Unsupported operator: %r" % ast.dump(stmt_expr), stmt_expr)
185
[end of vyper/parser/external_call.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/vyper/parser/external_call.py b/vyper/parser/external_call.py
--- a/vyper/parser/external_call.py
+++ b/vyper/parser/external_call.py
@@ -17,7 +17,7 @@
from vyper.types import (
BaseType,
ByteArrayLike,
- TupleType,
+ TupleLike,
get_size_of_type,
)
@@ -97,7 +97,7 @@
returner = [0, output_placeholder]
elif isinstance(sig.output_type, ByteArrayLike):
returner = [0, output_placeholder + 32]
- elif isinstance(sig.output_type, TupleType):
+ elif isinstance(sig.output_type, TupleLike):
returner = [0, output_placeholder]
else:
raise TypeMismatchException("Invalid output type: %s" % sig.output_type)
| {"golden_diff": "diff --git a/vyper/parser/external_call.py b/vyper/parser/external_call.py\n--- a/vyper/parser/external_call.py\n+++ b/vyper/parser/external_call.py\n@@ -17,7 +17,7 @@\n from vyper.types import (\n BaseType,\n ByteArrayLike,\n- TupleType,\n+ TupleLike,\n get_size_of_type,\n )\n \n@@ -97,7 +97,7 @@\n returner = [0, output_placeholder]\n elif isinstance(sig.output_type, ByteArrayLike):\n returner = [0, output_placeholder + 32]\n- elif isinstance(sig.output_type, TupleType):\n+ elif isinstance(sig.output_type, TupleLike):\n returner = [0, output_placeholder]\n else:\n raise TypeMismatchException(\"Invalid output type: %s\" % sig.output_type)\n", "issue": "External Call to Struct not working\n### Version Information\r\n\r\n* vyper Version (output of `vyper --version`): 0.1.0b8\r\n* OS: osx\r\n* Python Version (output of `python --version`): 3.7.1\r\n\r\n### What's your issue about?\r\n\r\nI am unable to interact with structs in 1 contract (let\u2019s call it contract A) that I get as a return value from a function in another contract (let\u2019s call it contract B).\r\n\r\nFor example, I\u2019m defining the struct in both contract A and B as follows:\r\n\r\n```\r\nstruct Model:\r\n x: timedelta\r\n y: uint256\r\n```\r\n\r\nThe function (in contract B) that returns the struct is this:\r\n\r\n```\r\n@public\r\n@constant\r\ndef getModel(_model: address) -> Model:\r\n return self.models[_model]\r\n```\r\n\r\nI can pull it into contract A like this and have it compile successfully:\r\n\r\n```\r\ncontract B:\r\n def getModel(_model: address) -> Model: constant\r\n```\r\n\r\nBut when I try to interact with the members of the struct (i.e. x and y), like this:\r\n\r\n```\r\nm: uint256 = B(self.b).getModel(self.model).y\r\n```\r\n\r\nI get a compilation error saying `Invalid output type: struct`. Any idea why this would be happening (why it would compile fine when declaring the contract at the top but failing in the function body)?\r\n\n", "before_files": [{"content": "import ast\n\nfrom vyper.exceptions import (\n FunctionDeclarationException,\n StructureException,\n TypeMismatchException,\n VariableDeclarationException,\n)\nfrom vyper.parser.lll_node import (\n LLLnode,\n)\nfrom vyper.parser.parser_utils import (\n getpos,\n pack_arguments,\n unwrap_location,\n)\nfrom vyper.types import (\n BaseType,\n ByteArrayLike,\n TupleType,\n get_size_of_type,\n)\n\n\ndef external_contract_call(node,\n context,\n contract_name,\n contract_address,\n pos,\n value=None,\n gas=None):\n from vyper.parser.parser import parse_expr\n if value is None:\n value = 0\n if gas is None:\n gas = 'gas'\n if not contract_name:\n raise StructureException(\n f'Invalid external contract call \"{node.func.attr}\".',\n node\n )\n if contract_name not in context.sigs:\n raise VariableDeclarationException(\n f'Contract \"{contract_name}\" not declared yet',\n node\n )\n method_name = node.func.attr\n if method_name not in context.sigs[contract_name]:\n raise FunctionDeclarationException(\n (\n \"Function not declared yet: %s (reminder: \"\n \"function must be declared in the correct contract)\"\n \" The available methods are: %s\"\n ) % (method_name, \",\".join(context.sigs[contract_name].keys())),\n node.func\n )\n sig = context.sigs[contract_name][method_name]\n inargs, inargsize, _ = pack_arguments(\n sig,\n [parse_expr(arg, context) for arg in node.args],\n context,\n pos=pos,\n )\n output_placeholder, output_size, returner = get_external_contract_call_output(sig, context)\n sub = [\n 'seq',\n ['assert', ['extcodesize', contract_address]],\n ['assert', ['ne', 'address', contract_address]],\n ]\n if context.is_constant() or sig.const:\n sub.append([\n 'assert',\n [\n 'staticcall',\n gas, contract_address, inargs, inargsize, output_placeholder, output_size,\n ]\n ])\n else:\n sub.append([\n 'assert',\n [\n 'call',\n gas, contract_address, value, inargs, inargsize, output_placeholder, output_size,\n ]\n ])\n sub.extend(returner)\n o = LLLnode.from_list(sub, typ=sig.output_type, location='memory', pos=getpos(node))\n return o\n\n\ndef get_external_contract_call_output(sig, context):\n if not sig.output_type:\n return 0, 0, []\n output_placeholder = context.new_placeholder(typ=sig.output_type)\n output_size = get_size_of_type(sig.output_type) * 32\n if isinstance(sig.output_type, BaseType):\n returner = [0, output_placeholder]\n elif isinstance(sig.output_type, ByteArrayLike):\n returner = [0, output_placeholder + 32]\n elif isinstance(sig.output_type, TupleType):\n returner = [0, output_placeholder]\n else:\n raise TypeMismatchException(\"Invalid output type: %s\" % sig.output_type)\n return output_placeholder, output_size, returner\n\n\ndef get_external_contract_keywords(stmt_expr, context):\n from vyper.parser.expr import Expr\n value, gas = None, None\n for kw in stmt_expr.keywords:\n if kw.arg not in ('value', 'gas'):\n raise TypeMismatchException(\n 'Invalid keyword argument, only \"gas\" and \"value\" supported.',\n stmt_expr,\n )\n elif kw.arg == 'gas':\n gas = Expr.parse_value_expr(kw.value, context)\n elif kw.arg == 'value':\n value = Expr.parse_value_expr(kw.value, context)\n return value, gas\n\n\ndef make_external_call(stmt_expr, context):\n from vyper.parser.expr import Expr\n value, gas = get_external_contract_keywords(stmt_expr, context)\n\n if isinstance(stmt_expr.func, ast.Attribute) and isinstance(stmt_expr.func.value, ast.Call):\n contract_name = stmt_expr.func.value.func.id\n contract_address = Expr.parse_value_expr(stmt_expr.func.value.args[0], context)\n\n return external_contract_call(\n stmt_expr,\n context,\n contract_name,\n contract_address,\n pos=getpos(stmt_expr),\n value=value,\n gas=gas,\n )\n\n elif isinstance(stmt_expr.func.value, ast.Attribute) and stmt_expr.func.value.attr in context.sigs: # noqa: E501\n contract_name = stmt_expr.func.value.attr\n var = context.globals[stmt_expr.func.value.attr]\n contract_address = unwrap_location(LLLnode.from_list(\n var.pos,\n typ=var.typ,\n location='storage',\n pos=getpos(stmt_expr),\n annotation='self.' + stmt_expr.func.value.attr,\n ))\n\n return external_contract_call(\n stmt_expr,\n context,\n contract_name,\n contract_address,\n pos=getpos(stmt_expr),\n value=value,\n gas=gas,\n )\n\n elif isinstance(stmt_expr.func.value, ast.Attribute) and stmt_expr.func.value.attr in context.globals: # noqa: E501\n contract_name = context.globals[stmt_expr.func.value.attr].typ.unit\n var = context.globals[stmt_expr.func.value.attr]\n contract_address = unwrap_location(LLLnode.from_list(\n var.pos,\n typ=var.typ,\n location='storage',\n pos=getpos(stmt_expr),\n annotation='self.' + stmt_expr.func.value.attr,\n ))\n\n return external_contract_call(\n stmt_expr,\n context,\n contract_name,\n contract_address,\n pos=getpos(stmt_expr),\n value=value,\n gas=gas,\n )\n\n else:\n raise StructureException(\"Unsupported operator: %r\" % ast.dump(stmt_expr), stmt_expr)\n", "path": "vyper/parser/external_call.py"}]} | 2,548 | 182 |
gh_patches_debug_1570 | rasdani/github-patches | git_diff | statsmodels__statsmodels-578 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
PatsyData detection buglet
If exog is None, then is_using_patsy data utility function returns False. It's a quick fix, but I'm starting to use patsy a bit more internally for convenience (e.g., passing in names to plotting functions rather than having to pull out the data) so I'll make a ticket.
</issue>
<code>
[start of statsmodels/tools/data.py]
1 """
2 Compatibility tools for various data structure inputs
3 """
4
5 #TODO: question: interpret_data
6 # looks good and could/should be merged with other check convertion functions we also have
7 # similar also to what Nathaniel mentioned for Formula
8 # good: if ndarray check passes then loading pandas is not triggered,
9
10
11 import numpy as np
12
13 def have_pandas():
14 try:
15 import pandas
16 return True
17 except ImportError:
18 return False
19 except Exception:
20 return False
21
22 def have_patsy():
23 try:
24 import patsy
25 return True
26 except ImportError:
27 return False
28 except Exception:
29 return False
30
31 def is_data_frame(obj):
32 if not have_pandas():
33 return False
34
35 import pandas as pn
36
37 return isinstance(obj, pn.DataFrame)
38
39 def is_design_matrix(obj):
40 if not have_patsy():
41 return False
42
43 from patsy import DesignMatrix
44 return isinstance(obj, DesignMatrix)
45
46 def _is_structured_ndarray(obj):
47 return isinstance(obj, np.ndarray) and obj.dtype.names is not None
48
49 def interpret_data(data, colnames=None, rownames=None):
50 """
51 Convert passed data structure to form required by estimation classes
52
53 Parameters
54 ----------
55 data : ndarray-like
56 colnames : sequence or None
57 May be part of data structure
58 rownames : sequence or None
59
60 Returns
61 -------
62 (values, colnames, rownames) : (homogeneous ndarray, list)
63 """
64 if isinstance(data, np.ndarray):
65 if _is_structured_ndarray(data):
66 if colnames is None:
67 colnames = data.dtype.names
68 values = struct_to_ndarray(data)
69 else:
70 values = data
71
72 if colnames is None:
73 colnames = ['Y_%d' % i for i in range(values.shape[1])]
74 elif is_data_frame(data):
75 # XXX: hack
76 data = data.dropna()
77 values = data.values
78 colnames = data.columns
79 rownames = data.index
80 else: # pragma: no cover
81 raise Exception('cannot handle other input types at the moment')
82
83 if not isinstance(colnames, list):
84 colnames = list(colnames)
85
86 # sanity check
87 if len(colnames) != values.shape[1]:
88 raise ValueError('length of colnames does not match number '
89 'of columns in data')
90
91 if rownames is not None and len(rownames) != len(values):
92 raise ValueError('length of rownames does not match number '
93 'of rows in data')
94
95 return values, colnames, rownames
96
97 def struct_to_ndarray(arr):
98 return arr.view((float, len(arr.dtype.names)))
99
100 def _is_using_ndarray_type(endog, exog):
101 return (type(endog) is np.ndarray and
102 (type(exog) is np.ndarray or exog is None))
103
104 def _is_using_ndarray(endog, exog):
105 return (isinstance(endog, np.ndarray) and
106 (isinstance(exog, np.ndarray) or exog is None))
107
108 def _is_using_pandas(endog, exog):
109 if not have_pandas():
110 return False
111 from pandas import Series, DataFrame, WidePanel
112 klasses = (Series, DataFrame, WidePanel)
113 return (isinstance(endog, klasses) or isinstance(exog, klasses))
114
115 def _is_array_like(endog, exog):
116 try: # do it like this in case of mixed types, ie., ndarray and list
117 endog = np.asarray(endog)
118 exog = np.asarray(exog)
119 return True
120 except:
121 return False
122
123 def _is_using_patsy(endog, exog):
124 # we get this when a structured array is passed through a formula
125 return is_design_matrix(endog) and is_design_matrix(exog)
126
127
[end of statsmodels/tools/data.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/statsmodels/tools/data.py b/statsmodels/tools/data.py
--- a/statsmodels/tools/data.py
+++ b/statsmodels/tools/data.py
@@ -122,5 +122,6 @@
def _is_using_patsy(endog, exog):
# we get this when a structured array is passed through a formula
- return is_design_matrix(endog) and is_design_matrix(exog)
+ return (is_design_matrix(endog) and
+ (is_design_matrix(exog) or exog is None))
| {"golden_diff": "diff --git a/statsmodels/tools/data.py b/statsmodels/tools/data.py\n--- a/statsmodels/tools/data.py\n+++ b/statsmodels/tools/data.py\n@@ -122,5 +122,6 @@\n \n def _is_using_patsy(endog, exog):\n # we get this when a structured array is passed through a formula\n- return is_design_matrix(endog) and is_design_matrix(exog)\n+ return (is_design_matrix(endog) and\n+ (is_design_matrix(exog) or exog is None))\n", "issue": "PatsyData detection buglet\nIf exog is None, then is_using_patsy data utility function returns False. It's a quick fix, but I'm starting to use patsy a bit more internally for convenience (e.g., passing in names to plotting functions rather than having to pull out the data) so I'll make a ticket.\n\n", "before_files": [{"content": "\"\"\"\nCompatibility tools for various data structure inputs\n\"\"\"\n\n#TODO: question: interpret_data\n# looks good and could/should be merged with other check convertion functions we also have\n# similar also to what Nathaniel mentioned for Formula\n# good: if ndarray check passes then loading pandas is not triggered,\n\n\nimport numpy as np\n\ndef have_pandas():\n try:\n import pandas\n return True\n except ImportError:\n return False\n except Exception:\n return False\n\ndef have_patsy():\n try:\n import patsy\n return True\n except ImportError:\n return False\n except Exception:\n return False\n\ndef is_data_frame(obj):\n if not have_pandas():\n return False\n\n import pandas as pn\n\n return isinstance(obj, pn.DataFrame)\n\ndef is_design_matrix(obj):\n if not have_patsy():\n return False\n\n from patsy import DesignMatrix\n return isinstance(obj, DesignMatrix)\n\ndef _is_structured_ndarray(obj):\n return isinstance(obj, np.ndarray) and obj.dtype.names is not None\n\ndef interpret_data(data, colnames=None, rownames=None):\n \"\"\"\n Convert passed data structure to form required by estimation classes\n\n Parameters\n ----------\n data : ndarray-like\n colnames : sequence or None\n May be part of data structure\n rownames : sequence or None\n\n Returns\n -------\n (values, colnames, rownames) : (homogeneous ndarray, list)\n \"\"\"\n if isinstance(data, np.ndarray):\n if _is_structured_ndarray(data):\n if colnames is None:\n colnames = data.dtype.names\n values = struct_to_ndarray(data)\n else:\n values = data\n\n if colnames is None:\n colnames = ['Y_%d' % i for i in range(values.shape[1])]\n elif is_data_frame(data):\n # XXX: hack\n data = data.dropna()\n values = data.values\n colnames = data.columns\n rownames = data.index\n else: # pragma: no cover\n raise Exception('cannot handle other input types at the moment')\n\n if not isinstance(colnames, list):\n colnames = list(colnames)\n\n # sanity check\n if len(colnames) != values.shape[1]:\n raise ValueError('length of colnames does not match number '\n 'of columns in data')\n\n if rownames is not None and len(rownames) != len(values):\n raise ValueError('length of rownames does not match number '\n 'of rows in data')\n\n return values, colnames, rownames\n\ndef struct_to_ndarray(arr):\n return arr.view((float, len(arr.dtype.names)))\n\ndef _is_using_ndarray_type(endog, exog):\n return (type(endog) is np.ndarray and\n (type(exog) is np.ndarray or exog is None))\n\ndef _is_using_ndarray(endog, exog):\n return (isinstance(endog, np.ndarray) and\n (isinstance(exog, np.ndarray) or exog is None))\n\ndef _is_using_pandas(endog, exog):\n if not have_pandas():\n return False\n from pandas import Series, DataFrame, WidePanel\n klasses = (Series, DataFrame, WidePanel)\n return (isinstance(endog, klasses) or isinstance(exog, klasses))\n\ndef _is_array_like(endog, exog):\n try: # do it like this in case of mixed types, ie., ndarray and list\n endog = np.asarray(endog)\n exog = np.asarray(exog)\n return True\n except:\n return False\n\ndef _is_using_patsy(endog, exog):\n # we get this when a structured array is passed through a formula\n return is_design_matrix(endog) and is_design_matrix(exog)\n\n", "path": "statsmodels/tools/data.py"}]} | 1,727 | 118 |
gh_patches_debug_66460 | rasdani/github-patches | git_diff | pyca__cryptography-3995 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Remove docutils.conf - enable smart quotes for builders
Blocked on:
- [x] https://github.com/sphinx-doc/sphinx/pull/4110
- [x] Sphinx release
- [x] https://github.com/sphinx-contrib/spelling/pull/2
- [x] sphinxcontrib-spelling release
</issue>
<code>
[start of setup.py]
1 #!/usr/bin/env python
2
3 # This file is dual licensed under the terms of the Apache License, Version
4 # 2.0, and the BSD License. See the LICENSE file in the root of this repository
5 # for complete details.
6
7 from __future__ import absolute_import, division, print_function
8
9 import os
10 import platform
11 import subprocess
12 import sys
13 from distutils.command.build import build
14
15 import pkg_resources
16
17 from setuptools import find_packages, setup
18 from setuptools.command.install import install
19 from setuptools.command.test import test
20
21
22 base_dir = os.path.dirname(__file__)
23 src_dir = os.path.join(base_dir, "src")
24
25 # When executing the setup.py, we need to be able to import ourselves, this
26 # means that we need to add the src/ directory to the sys.path.
27 sys.path.insert(0, src_dir)
28
29 about = {}
30 with open(os.path.join(src_dir, "cryptography", "__about__.py")) as f:
31 exec(f.read(), about)
32
33
34 VECTORS_DEPENDENCY = "cryptography_vectors=={0}".format(about['__version__'])
35
36 setup_requirements = []
37
38 if platform.python_implementation() == "PyPy":
39 if sys.pypy_version_info < (5, 3):
40 raise RuntimeError(
41 "cryptography 1.9 is not compatible with PyPy < 5.3. Please "
42 "upgrade PyPy to use this library."
43 )
44 else:
45 setup_requirements.append("cffi>=1.7")
46
47 test_requirements = [
48 "pytest>=3.2.1",
49 "pretend",
50 "iso8601",
51 "pytz",
52 "hypothesis>=1.11.4",
53 ]
54
55
56 # If there's no vectors locally that probably means we are in a tarball and
57 # need to go and get the matching vectors package from PyPi
58 if not os.path.exists(os.path.join(base_dir, "vectors/setup.py")):
59 test_requirements.append(VECTORS_DEPENDENCY)
60
61
62 class PyTest(test):
63 def finalize_options(self):
64 test.finalize_options(self)
65 self.test_args = []
66 self.test_suite = True
67
68 # This means there's a vectors/ folder with the package in here.
69 # cd into it, install the vectors package and then refresh sys.path
70 if VECTORS_DEPENDENCY not in test_requirements:
71 subprocess.check_call(
72 [sys.executable, "setup.py", "install"], cwd="vectors"
73 )
74 pkg_resources.get_distribution("cryptography_vectors").activate()
75
76 def run_tests(self):
77 # Import here because in module scope the eggs are not loaded.
78 import pytest
79 test_args = [os.path.join(base_dir, "tests")]
80 errno = pytest.main(test_args)
81 sys.exit(errno)
82
83
84 def keywords_with_side_effects(argv):
85 """
86 Get a dictionary with setup keywords that (can) have side effects.
87
88 :param argv: A list of strings with command line arguments.
89 :returns: A dictionary with keyword arguments for the ``setup()`` function.
90
91 This setup.py script uses the setuptools 'setup_requires' feature because
92 this is required by the cffi package to compile extension modules. The
93 purpose of ``keywords_with_side_effects()`` is to avoid triggering the cffi
94 build process as a result of setup.py invocations that don't need the cffi
95 module to be built (setup.py serves the dual purpose of exposing package
96 metadata).
97
98 All of the options listed by ``python setup.py --help`` that print
99 information should be recognized here. The commands ``clean``,
100 ``egg_info``, ``register``, ``sdist`` and ``upload`` are also recognized.
101 Any combination of these options and commands is also supported.
102
103 This function was originally based on the `setup.py script`_ of SciPy (see
104 also the discussion in `pip issue #25`_).
105
106 .. _pip issue #25: https://github.com/pypa/pip/issues/25
107 .. _setup.py script: https://github.com/scipy/scipy/blob/master/setup.py
108 """
109 no_setup_requires_arguments = (
110 '-h', '--help',
111 '-n', '--dry-run',
112 '-q', '--quiet',
113 '-v', '--verbose',
114 '-V', '--version',
115 '--author',
116 '--author-email',
117 '--classifiers',
118 '--contact',
119 '--contact-email',
120 '--description',
121 '--egg-base',
122 '--fullname',
123 '--help-commands',
124 '--keywords',
125 '--licence',
126 '--license',
127 '--long-description',
128 '--maintainer',
129 '--maintainer-email',
130 '--name',
131 '--no-user-cfg',
132 '--obsoletes',
133 '--platforms',
134 '--provides',
135 '--requires',
136 '--url',
137 'clean',
138 'egg_info',
139 'register',
140 'sdist',
141 'upload',
142 )
143
144 def is_short_option(argument):
145 """Check whether a command line argument is a short option."""
146 return len(argument) >= 2 and argument[0] == '-' and argument[1] != '-'
147
148 def expand_short_options(argument):
149 """Expand combined short options into canonical short options."""
150 return ('-' + char for char in argument[1:])
151
152 def argument_without_setup_requirements(argv, i):
153 """Check whether a command line argument needs setup requirements."""
154 if argv[i] in no_setup_requires_arguments:
155 # Simple case: An argument which is either an option or a command
156 # which doesn't need setup requirements.
157 return True
158 elif (is_short_option(argv[i]) and
159 all(option in no_setup_requires_arguments
160 for option in expand_short_options(argv[i]))):
161 # Not so simple case: Combined short options none of which need
162 # setup requirements.
163 return True
164 elif argv[i - 1:i] == ['--egg-base']:
165 # Tricky case: --egg-info takes an argument which should not make
166 # us use setup_requires (defeating the purpose of this code).
167 return True
168 else:
169 return False
170
171 if all(argument_without_setup_requirements(argv, i)
172 for i in range(1, len(argv))):
173 return {
174 "cmdclass": {
175 "build": DummyBuild,
176 "install": DummyInstall,
177 "test": DummyPyTest,
178 }
179 }
180 else:
181 cffi_modules = [
182 "src/_cffi_src/build_openssl.py:ffi",
183 "src/_cffi_src/build_constant_time.py:ffi",
184 "src/_cffi_src/build_padding.py:ffi",
185 ]
186
187 return {
188 "setup_requires": setup_requirements,
189 "cmdclass": {
190 "test": PyTest,
191 },
192 "cffi_modules": cffi_modules
193 }
194
195
196 setup_requires_error = ("Requested setup command that needs 'setup_requires' "
197 "while command line arguments implied a side effect "
198 "free command or option.")
199
200
201 class DummyBuild(build):
202 """
203 This class makes it very obvious when ``keywords_with_side_effects()`` has
204 incorrectly interpreted the command line arguments to ``setup.py build`` as
205 one of the 'side effect free' commands or options.
206 """
207
208 def run(self):
209 raise RuntimeError(setup_requires_error)
210
211
212 class DummyInstall(install):
213 """
214 This class makes it very obvious when ``keywords_with_side_effects()`` has
215 incorrectly interpreted the command line arguments to ``setup.py install``
216 as one of the 'side effect free' commands or options.
217 """
218
219 def run(self):
220 raise RuntimeError(setup_requires_error)
221
222
223 class DummyPyTest(test):
224 """
225 This class makes it very obvious when ``keywords_with_side_effects()`` has
226 incorrectly interpreted the command line arguments to ``setup.py test`` as
227 one of the 'side effect free' commands or options.
228 """
229
230 def run_tests(self):
231 raise RuntimeError(setup_requires_error)
232
233
234 with open(os.path.join(base_dir, "README.rst")) as f:
235 long_description = f.read()
236
237
238 setup(
239 name=about["__title__"],
240 version=about["__version__"],
241
242 description=about["__summary__"],
243 long_description=long_description,
244 license=about["__license__"],
245 url=about["__uri__"],
246
247 author=about["__author__"],
248 author_email=about["__email__"],
249
250 classifiers=[
251 "Intended Audience :: Developers",
252 "License :: OSI Approved :: Apache Software License",
253 "License :: OSI Approved :: BSD License",
254 "Natural Language :: English",
255 "Operating System :: MacOS :: MacOS X",
256 "Operating System :: POSIX",
257 "Operating System :: POSIX :: BSD",
258 "Operating System :: POSIX :: Linux",
259 "Operating System :: Microsoft :: Windows",
260 "Programming Language :: Python",
261 "Programming Language :: Python :: 2",
262 "Programming Language :: Python :: 2.7",
263 "Programming Language :: Python :: 3",
264 "Programming Language :: Python :: 3.4",
265 "Programming Language :: Python :: 3.5",
266 "Programming Language :: Python :: 3.6",
267 "Programming Language :: Python :: Implementation :: CPython",
268 "Programming Language :: Python :: Implementation :: PyPy",
269 "Topic :: Security :: Cryptography",
270 ],
271
272 package_dir={"": "src"},
273 packages=find_packages(where="src", exclude=["_cffi_src", "_cffi_src.*"]),
274 include_package_data=True,
275
276 install_requires=[
277 "idna >= 2.1",
278 "asn1crypto >= 0.21.0",
279 "six >= 1.4.1",
280 ],
281 tests_require=test_requirements,
282 extras_require={
283 ":python_version < '3'": ["enum34", "ipaddress"],
284 ":platform_python_implementation != 'PyPy'": ["cffi >= 1.7"],
285
286 "test": test_requirements,
287 "docstest": [
288 "doc8",
289 "pyenchant >= 1.6.11",
290 "readme_renderer >= 16.0",
291 "sphinx",
292 "sphinx_rtd_theme",
293 "sphinxcontrib-spelling",
294 ],
295 "pep8test": [
296 "flake8",
297 "flake8-import-order",
298 "pep8-naming",
299 ],
300 },
301
302 # for cffi
303 zip_safe=False,
304 ext_package="cryptography.hazmat.bindings",
305 **keywords_with_side_effects(sys.argv)
306 )
307
[end of setup.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -288,9 +288,9 @@
"doc8",
"pyenchant >= 1.6.11",
"readme_renderer >= 16.0",
- "sphinx",
+ "sphinx >= 1.6.5",
"sphinx_rtd_theme",
- "sphinxcontrib-spelling",
+ "sphinxcontrib-spelling >= 4.0.1",
],
"pep8test": [
"flake8",
| {"golden_diff": "diff --git a/setup.py b/setup.py\n--- a/setup.py\n+++ b/setup.py\n@@ -288,9 +288,9 @@\n \"doc8\",\n \"pyenchant >= 1.6.11\",\n \"readme_renderer >= 16.0\",\n- \"sphinx\",\n+ \"sphinx >= 1.6.5\",\n \"sphinx_rtd_theme\",\n- \"sphinxcontrib-spelling\",\n+ \"sphinxcontrib-spelling >= 4.0.1\",\n ],\n \"pep8test\": [\n \"flake8\",\n", "issue": "Remove docutils.conf - enable smart quotes for builders\nBlocked on:\r\n\r\n- [x] https://github.com/sphinx-doc/sphinx/pull/4110\r\n - [x] Sphinx release\r\n- [x] https://github.com/sphinx-contrib/spelling/pull/2\r\n - [x] sphinxcontrib-spelling release\n", "before_files": [{"content": "#!/usr/bin/env python\n\n# This file is dual licensed under the terms of the Apache License, Version\n# 2.0, and the BSD License. See the LICENSE file in the root of this repository\n# for complete details.\n\nfrom __future__ import absolute_import, division, print_function\n\nimport os\nimport platform\nimport subprocess\nimport sys\nfrom distutils.command.build import build\n\nimport pkg_resources\n\nfrom setuptools import find_packages, setup\nfrom setuptools.command.install import install\nfrom setuptools.command.test import test\n\n\nbase_dir = os.path.dirname(__file__)\nsrc_dir = os.path.join(base_dir, \"src\")\n\n# When executing the setup.py, we need to be able to import ourselves, this\n# means that we need to add the src/ directory to the sys.path.\nsys.path.insert(0, src_dir)\n\nabout = {}\nwith open(os.path.join(src_dir, \"cryptography\", \"__about__.py\")) as f:\n exec(f.read(), about)\n\n\nVECTORS_DEPENDENCY = \"cryptography_vectors=={0}\".format(about['__version__'])\n\nsetup_requirements = []\n\nif platform.python_implementation() == \"PyPy\":\n if sys.pypy_version_info < (5, 3):\n raise RuntimeError(\n \"cryptography 1.9 is not compatible with PyPy < 5.3. Please \"\n \"upgrade PyPy to use this library.\"\n )\nelse:\n setup_requirements.append(\"cffi>=1.7\")\n\ntest_requirements = [\n \"pytest>=3.2.1\",\n \"pretend\",\n \"iso8601\",\n \"pytz\",\n \"hypothesis>=1.11.4\",\n]\n\n\n# If there's no vectors locally that probably means we are in a tarball and\n# need to go and get the matching vectors package from PyPi\nif not os.path.exists(os.path.join(base_dir, \"vectors/setup.py\")):\n test_requirements.append(VECTORS_DEPENDENCY)\n\n\nclass PyTest(test):\n def finalize_options(self):\n test.finalize_options(self)\n self.test_args = []\n self.test_suite = True\n\n # This means there's a vectors/ folder with the package in here.\n # cd into it, install the vectors package and then refresh sys.path\n if VECTORS_DEPENDENCY not in test_requirements:\n subprocess.check_call(\n [sys.executable, \"setup.py\", \"install\"], cwd=\"vectors\"\n )\n pkg_resources.get_distribution(\"cryptography_vectors\").activate()\n\n def run_tests(self):\n # Import here because in module scope the eggs are not loaded.\n import pytest\n test_args = [os.path.join(base_dir, \"tests\")]\n errno = pytest.main(test_args)\n sys.exit(errno)\n\n\ndef keywords_with_side_effects(argv):\n \"\"\"\n Get a dictionary with setup keywords that (can) have side effects.\n\n :param argv: A list of strings with command line arguments.\n :returns: A dictionary with keyword arguments for the ``setup()`` function.\n\n This setup.py script uses the setuptools 'setup_requires' feature because\n this is required by the cffi package to compile extension modules. The\n purpose of ``keywords_with_side_effects()`` is to avoid triggering the cffi\n build process as a result of setup.py invocations that don't need the cffi\n module to be built (setup.py serves the dual purpose of exposing package\n metadata).\n\n All of the options listed by ``python setup.py --help`` that print\n information should be recognized here. The commands ``clean``,\n ``egg_info``, ``register``, ``sdist`` and ``upload`` are also recognized.\n Any combination of these options and commands is also supported.\n\n This function was originally based on the `setup.py script`_ of SciPy (see\n also the discussion in `pip issue #25`_).\n\n .. _pip issue #25: https://github.com/pypa/pip/issues/25\n .. _setup.py script: https://github.com/scipy/scipy/blob/master/setup.py\n \"\"\"\n no_setup_requires_arguments = (\n '-h', '--help',\n '-n', '--dry-run',\n '-q', '--quiet',\n '-v', '--verbose',\n '-V', '--version',\n '--author',\n '--author-email',\n '--classifiers',\n '--contact',\n '--contact-email',\n '--description',\n '--egg-base',\n '--fullname',\n '--help-commands',\n '--keywords',\n '--licence',\n '--license',\n '--long-description',\n '--maintainer',\n '--maintainer-email',\n '--name',\n '--no-user-cfg',\n '--obsoletes',\n '--platforms',\n '--provides',\n '--requires',\n '--url',\n 'clean',\n 'egg_info',\n 'register',\n 'sdist',\n 'upload',\n )\n\n def is_short_option(argument):\n \"\"\"Check whether a command line argument is a short option.\"\"\"\n return len(argument) >= 2 and argument[0] == '-' and argument[1] != '-'\n\n def expand_short_options(argument):\n \"\"\"Expand combined short options into canonical short options.\"\"\"\n return ('-' + char for char in argument[1:])\n\n def argument_without_setup_requirements(argv, i):\n \"\"\"Check whether a command line argument needs setup requirements.\"\"\"\n if argv[i] in no_setup_requires_arguments:\n # Simple case: An argument which is either an option or a command\n # which doesn't need setup requirements.\n return True\n elif (is_short_option(argv[i]) and\n all(option in no_setup_requires_arguments\n for option in expand_short_options(argv[i]))):\n # Not so simple case: Combined short options none of which need\n # setup requirements.\n return True\n elif argv[i - 1:i] == ['--egg-base']:\n # Tricky case: --egg-info takes an argument which should not make\n # us use setup_requires (defeating the purpose of this code).\n return True\n else:\n return False\n\n if all(argument_without_setup_requirements(argv, i)\n for i in range(1, len(argv))):\n return {\n \"cmdclass\": {\n \"build\": DummyBuild,\n \"install\": DummyInstall,\n \"test\": DummyPyTest,\n }\n }\n else:\n cffi_modules = [\n \"src/_cffi_src/build_openssl.py:ffi\",\n \"src/_cffi_src/build_constant_time.py:ffi\",\n \"src/_cffi_src/build_padding.py:ffi\",\n ]\n\n return {\n \"setup_requires\": setup_requirements,\n \"cmdclass\": {\n \"test\": PyTest,\n },\n \"cffi_modules\": cffi_modules\n }\n\n\nsetup_requires_error = (\"Requested setup command that needs 'setup_requires' \"\n \"while command line arguments implied a side effect \"\n \"free command or option.\")\n\n\nclass DummyBuild(build):\n \"\"\"\n This class makes it very obvious when ``keywords_with_side_effects()`` has\n incorrectly interpreted the command line arguments to ``setup.py build`` as\n one of the 'side effect free' commands or options.\n \"\"\"\n\n def run(self):\n raise RuntimeError(setup_requires_error)\n\n\nclass DummyInstall(install):\n \"\"\"\n This class makes it very obvious when ``keywords_with_side_effects()`` has\n incorrectly interpreted the command line arguments to ``setup.py install``\n as one of the 'side effect free' commands or options.\n \"\"\"\n\n def run(self):\n raise RuntimeError(setup_requires_error)\n\n\nclass DummyPyTest(test):\n \"\"\"\n This class makes it very obvious when ``keywords_with_side_effects()`` has\n incorrectly interpreted the command line arguments to ``setup.py test`` as\n one of the 'side effect free' commands or options.\n \"\"\"\n\n def run_tests(self):\n raise RuntimeError(setup_requires_error)\n\n\nwith open(os.path.join(base_dir, \"README.rst\")) as f:\n long_description = f.read()\n\n\nsetup(\n name=about[\"__title__\"],\n version=about[\"__version__\"],\n\n description=about[\"__summary__\"],\n long_description=long_description,\n license=about[\"__license__\"],\n url=about[\"__uri__\"],\n\n author=about[\"__author__\"],\n author_email=about[\"__email__\"],\n\n classifiers=[\n \"Intended Audience :: Developers\",\n \"License :: OSI Approved :: Apache Software License\",\n \"License :: OSI Approved :: BSD License\",\n \"Natural Language :: English\",\n \"Operating System :: MacOS :: MacOS X\",\n \"Operating System :: POSIX\",\n \"Operating System :: POSIX :: BSD\",\n \"Operating System :: POSIX :: Linux\",\n \"Operating System :: Microsoft :: Windows\",\n \"Programming Language :: Python\",\n \"Programming Language :: Python :: 2\",\n \"Programming Language :: Python :: 2.7\",\n \"Programming Language :: Python :: 3\",\n \"Programming Language :: Python :: 3.4\",\n \"Programming Language :: Python :: 3.5\",\n \"Programming Language :: Python :: 3.6\",\n \"Programming Language :: Python :: Implementation :: CPython\",\n \"Programming Language :: Python :: Implementation :: PyPy\",\n \"Topic :: Security :: Cryptography\",\n ],\n\n package_dir={\"\": \"src\"},\n packages=find_packages(where=\"src\", exclude=[\"_cffi_src\", \"_cffi_src.*\"]),\n include_package_data=True,\n\n install_requires=[\n \"idna >= 2.1\",\n \"asn1crypto >= 0.21.0\",\n \"six >= 1.4.1\",\n ],\n tests_require=test_requirements,\n extras_require={\n \":python_version < '3'\": [\"enum34\", \"ipaddress\"],\n \":platform_python_implementation != 'PyPy'\": [\"cffi >= 1.7\"],\n\n \"test\": test_requirements,\n \"docstest\": [\n \"doc8\",\n \"pyenchant >= 1.6.11\",\n \"readme_renderer >= 16.0\",\n \"sphinx\",\n \"sphinx_rtd_theme\",\n \"sphinxcontrib-spelling\",\n ],\n \"pep8test\": [\n \"flake8\",\n \"flake8-import-order\",\n \"pep8-naming\",\n ],\n },\n\n # for cffi\n zip_safe=False,\n ext_package=\"cryptography.hazmat.bindings\",\n **keywords_with_side_effects(sys.argv)\n)\n", "path": "setup.py"}]} | 3,679 | 132 |
gh_patches_debug_23026 | rasdani/github-patches | git_diff | DistrictDataLabs__yellowbrick-427 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Add alpha transparency to RadViz
To make the RadViz a bit easier to read, we can add optional transparency, set by the user to be able to distinguish regions of more or less density.
</issue>
<code>
[start of yellowbrick/features/radviz.py]
1 # yellowbrick.features.radviz
2 # Implements radviz for feature analysis.
3 #
4 # Author: Benjamin Bengfort <[email protected]>
5 # Created: Fri Oct 07 13:18:00 2016 -0400
6 #
7 # Copyright (C) 2016 District Data Labs
8 # For license information, see LICENSE.txt
9 #
10 # ID: radviz.py [0f4b236] [email protected] $
11
12 """
13 Implements radviz for feature analysis.
14 """
15
16 ##########################################################################
17 ## Imports
18 ##########################################################################
19
20 import numpy as np
21 import matplotlib.patches as patches
22
23 from yellowbrick.utils import is_dataframe
24 from yellowbrick.features.base import DataVisualizer
25 import yellowbrick.utils.nan_warnings as nan_warnings
26 from yellowbrick.style.colors import resolve_colors
27
28
29 ##########################################################################
30 ## Quick Methods
31 ##########################################################################
32
33 def radviz(X, y=None, ax=None, features=None, classes=None,
34 color=None, colormap=None, **kwargs):
35 """
36 Displays each feature as an axis around a circle surrounding a scatter
37 plot whose points are each individual instance.
38
39 This helper function is a quick wrapper to utilize the RadialVisualizer
40 (Transformer) for one-off analysis.
41
42 Parameters
43 ----------
44
45 X : ndarray or DataFrame of shape n x m
46 A matrix of n instances with m features
47
48 y : ndarray or Series of length n
49 An array or series of target or class values
50
51 ax : matplotlib Axes, default: None
52 The axes to plot the figure on.
53
54 features : list of strings, default: None
55 The names of the features or columns
56
57 classes : list of strings, default: None
58 The names of the classes in the target
59
60 color : list or tuple of colors, default: None
61 Specify the colors for each individual class
62
63 colormap : string or matplotlib cmap, default: None
64 Sequential colormap for continuous target
65
66 Returns
67 -------
68 ax : matplotlib axes
69 Returns the axes that the parallel coordinates were drawn on.
70 """
71 # Instantiate the visualizer
72 visualizer = RadialVisualizer(
73 ax, features, classes, color, colormap, **kwargs
74 )
75
76 # Fit and transform the visualizer (calls draw)
77 visualizer.fit(X, y, **kwargs)
78 visualizer.transform(X)
79
80 # Return the axes object on the visualizer
81 return visualizer.ax
82
83
84 ##########################################################################
85 ## Static RadViz Visualizer
86 ##########################################################################
87
88 class RadialVisualizer(DataVisualizer):
89 """
90 RadViz is a multivariate data visualization algorithm that plots each
91 axis uniformely around the circumference of a circle then plots points on
92 the interior of the circle such that the point normalizes its values on
93 the axes from the center to each arc.
94
95 Parameters
96 ----------
97
98 ax : matplotlib Axes, default: None
99 The axis to plot the figure on. If None is passed in the current axes
100 will be used (or generated if required).
101
102 features : list, default: None
103 a list of feature names to use
104 If a DataFrame is passed to fit and features is None, feature
105 names are selected as the columns of the DataFrame.
106
107 classes : list, default: None
108 a list of class names for the legend
109 If classes is None and a y value is passed to fit then the classes
110 are selected from the target vector.
111
112 color : list or tuple, default: None
113 optional list or tuple of colors to colorize lines
114 Use either color to colorize the lines on a per class basis or
115 colormap to color them on a continuous scale.
116
117 colormap : string or cmap, default: None
118 optional string or matplotlib cmap to colorize lines
119 Use either color to colorize the lines on a per class basis or
120 colormap to color them on a continuous scale.
121
122 kwargs : dict
123 Keyword arguments that are passed to the base class and may influence
124 the visualization as defined in other Visualizers.
125
126 Examples
127 --------
128
129 >>> visualizer = RadViz()
130 >>> visualizer.fit(X, y)
131 >>> visualizer.transform(X)
132 >>> visualizer.poof()
133
134 Notes
135 -----
136 These parameters can be influenced later on in the visualization
137 process, but can and should be set as early as possible.
138 """
139
140 def __init__(self, ax=None, features=None, classes=None, color=None,
141 colormap=None, **kwargs):
142 super(RadialVisualizer, self).__init__(
143 ax, features, classes, color, colormap, **kwargs
144 )
145
146 @staticmethod
147 def normalize(X):
148 """
149 MinMax normalization to fit a matrix in the space [0,1] by column.
150 """
151 a = X.min(axis=0)
152 b = X.max(axis=0)
153 return (X - a[np.newaxis, :]) / ((b - a)[np.newaxis, :])
154
155 def draw(self, X, y, **kwargs):
156 """
157 Called from the fit method, this method creates the radviz canvas and
158 draws each instance as a class or target colored point, whose location
159 is determined by the feature data set.
160 """
161 # Convert from dataframe
162 if is_dataframe(X):
163 X = X.as_matrix()
164
165 # Clean out nans and warn that the user they aren't plotted
166 nan_warnings.warn_if_nans_exist(X)
167 X, y = nan_warnings.filter_missing(X, y)
168
169 # Get the shape of the data
170 nrows, ncols = X.shape
171
172 # Set the axes limits
173 self.ax.set_xlim([-1,1])
174 self.ax.set_ylim([-1,1])
175
176 # Create the colors
177 # TODO: Allow both colormap, listed colors, and palette definition
178 # TODO: Make this an independent function or property for override!
179 color_values = resolve_colors(
180 n_colors=len(self.classes_), colormap=self.colormap, colors=self.color
181 )
182 colors = dict(zip(self.classes_, color_values))
183
184 # Create a data structure to hold scatter plot representations
185 to_plot = {}
186 for kls in self.classes_:
187 to_plot[kls] = [[], []]
188
189 # Compute the arcs around the circumference for each feature axis
190 # TODO: make this an independent function for override
191 s = np.array([
192 (np.cos(t), np.sin(t))
193 for t in [
194 2.0 * np.pi * (i / float(ncols))
195 for i in range(ncols)
196 ]
197 ])
198
199 # Compute the locations of the scatter plot for each class
200 # Normalize the data first to plot along the 0, 1 axis
201 for i, row in enumerate(self.normalize(X)):
202 row_ = np.repeat(np.expand_dims(row, axis=1), 2, axis=1)
203 xy = (s * row_).sum(axis=0) / row.sum()
204 kls = self.classes_[y[i]]
205
206 to_plot[kls][0].append(xy[0])
207 to_plot[kls][1].append(xy[1])
208
209 # Add the scatter plots from the to_plot function
210 # TODO: store these plots to add more instances to later
211 # TODO: make this a separate function
212 for i, kls in enumerate(self.classes_):
213 self.ax.scatter(to_plot[kls][0], to_plot[kls][1], color=colors[kls], label=str(kls), **kwargs)
214
215 # Add the circular axis path
216 # TODO: Make this a seperate function (along with labeling)
217 self.ax.add_patch(patches.Circle((0.0, 0.0), radius=1.0, facecolor='none', edgecolor='grey', linewidth=.5 ))
218
219 # Add the feature names
220 for xy, name in zip(s, self.features_):
221 # Add the patch indicating the location of the axis
222 self.ax.add_patch(patches.Circle(xy, radius=0.025, facecolor='#777777'))
223
224 # Add the feature names offset around the axis marker
225 if xy[0] < 0.0 and xy[1] < 0.0:
226 self.ax.text(xy[0] - 0.025, xy[1] - 0.025, name, ha='right', va='top', size='small')
227 elif xy[0] < 0.0 and xy[1] >= 0.0:
228 self.ax.text(xy[0] - 0.025, xy[1] + 0.025, name, ha='right', va='bottom', size='small')
229 elif xy[0] >= 0.0 and xy[1] < 0.0:
230 self.ax.text(xy[0] + 0.025, xy[1] - 0.025, name, ha='left', va='top', size='small')
231 elif xy[0] >= 0.0 and xy[1] >= 0.0:
232 self.ax.text(xy[0] + 0.025, xy[1] + 0.025, name, ha='left', va='bottom', size='small')
233
234 self.ax.axis('equal')
235
236 def finalize(self, **kwargs):
237 """
238 Finalize executes any subclass-specific axes finalization steps.
239 The user calls poof and poof calls finalize.
240
241 Parameters
242 ----------
243 kwargs: generic keyword arguments.
244
245 """
246 # Set the title
247 self.set_title(
248 'RadViz for {} Features'.format(len(self.features_))
249 )
250
251 # Remove the ticks from the graph
252 self.ax.set_yticks([])
253 self.ax.set_xticks([])
254
255 # Add the legend
256 self.ax.legend(loc='best')
257
258
259 # Alias for RadViz
260 RadViz = RadialVisualizer
261
[end of yellowbrick/features/radviz.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/yellowbrick/features/radviz.py b/yellowbrick/features/radviz.py
--- a/yellowbrick/features/radviz.py
+++ b/yellowbrick/features/radviz.py
@@ -138,10 +138,11 @@
"""
def __init__(self, ax=None, features=None, classes=None, color=None,
- colormap=None, **kwargs):
+ colormap=None, alpha=1, **kwargs):
super(RadialVisualizer, self).__init__(
ax, features, classes, color, colormap, **kwargs
)
+ self.alpha = alpha
@staticmethod
def normalize(X):
@@ -210,7 +211,7 @@
# TODO: store these plots to add more instances to later
# TODO: make this a separate function
for i, kls in enumerate(self.classes_):
- self.ax.scatter(to_plot[kls][0], to_plot[kls][1], color=colors[kls], label=str(kls), **kwargs)
+ self.ax.scatter(to_plot[kls][0], to_plot[kls][1], color=colors[kls], label=str(kls), alpha=self.alpha, **kwargs)
# Add the circular axis path
# TODO: Make this a seperate function (along with labeling)
| {"golden_diff": "diff --git a/yellowbrick/features/radviz.py b/yellowbrick/features/radviz.py\n--- a/yellowbrick/features/radviz.py\n+++ b/yellowbrick/features/radviz.py\n@@ -138,10 +138,11 @@\n \"\"\"\n \n def __init__(self, ax=None, features=None, classes=None, color=None,\n- colormap=None, **kwargs):\n+ colormap=None, alpha=1, **kwargs):\n super(RadialVisualizer, self).__init__(\n ax, features, classes, color, colormap, **kwargs\n )\n+ self.alpha = alpha\n \n @staticmethod\n def normalize(X):\n@@ -210,7 +211,7 @@\n # TODO: store these plots to add more instances to later\n # TODO: make this a separate function\n for i, kls in enumerate(self.classes_):\n- self.ax.scatter(to_plot[kls][0], to_plot[kls][1], color=colors[kls], label=str(kls), **kwargs)\n+ self.ax.scatter(to_plot[kls][0], to_plot[kls][1], color=colors[kls], label=str(kls), alpha=self.alpha, **kwargs)\n \n # Add the circular axis path\n # TODO: Make this a seperate function (along with labeling)\n", "issue": "Add alpha transparency to RadViz\nTo make the RadViz a bit easier to read, we can add optional transparency, set by the user to be able to distinguish regions of more or less density. \n", "before_files": [{"content": "# yellowbrick.features.radviz\n# Implements radviz for feature analysis.\n#\n# Author: Benjamin Bengfort <[email protected]>\n# Created: Fri Oct 07 13:18:00 2016 -0400\n#\n# Copyright (C) 2016 District Data Labs\n# For license information, see LICENSE.txt\n#\n# ID: radviz.py [0f4b236] [email protected] $\n\n\"\"\"\nImplements radviz for feature analysis.\n\"\"\"\n\n##########################################################################\n## Imports\n##########################################################################\n\nimport numpy as np\nimport matplotlib.patches as patches\n\nfrom yellowbrick.utils import is_dataframe\nfrom yellowbrick.features.base import DataVisualizer\nimport yellowbrick.utils.nan_warnings as nan_warnings\nfrom yellowbrick.style.colors import resolve_colors\n\n\n##########################################################################\n## Quick Methods\n##########################################################################\n\ndef radviz(X, y=None, ax=None, features=None, classes=None,\n color=None, colormap=None, **kwargs):\n \"\"\"\n Displays each feature as an axis around a circle surrounding a scatter\n plot whose points are each individual instance.\n\n This helper function is a quick wrapper to utilize the RadialVisualizer\n (Transformer) for one-off analysis.\n\n Parameters\n ----------\n\n X : ndarray or DataFrame of shape n x m\n A matrix of n instances with m features\n\n y : ndarray or Series of length n\n An array or series of target or class values\n\n ax : matplotlib Axes, default: None\n The axes to plot the figure on.\n\n features : list of strings, default: None\n The names of the features or columns\n\n classes : list of strings, default: None\n The names of the classes in the target\n\n color : list or tuple of colors, default: None\n Specify the colors for each individual class\n\n colormap : string or matplotlib cmap, default: None\n Sequential colormap for continuous target\n\n Returns\n -------\n ax : matplotlib axes\n Returns the axes that the parallel coordinates were drawn on.\n \"\"\"\n # Instantiate the visualizer\n visualizer = RadialVisualizer(\n ax, features, classes, color, colormap, **kwargs\n )\n\n # Fit and transform the visualizer (calls draw)\n visualizer.fit(X, y, **kwargs)\n visualizer.transform(X)\n\n # Return the axes object on the visualizer\n return visualizer.ax\n\n\n##########################################################################\n## Static RadViz Visualizer\n##########################################################################\n\nclass RadialVisualizer(DataVisualizer):\n \"\"\"\n RadViz is a multivariate data visualization algorithm that plots each\n axis uniformely around the circumference of a circle then plots points on\n the interior of the circle such that the point normalizes its values on\n the axes from the center to each arc.\n\n Parameters\n ----------\n\n ax : matplotlib Axes, default: None\n The axis to plot the figure on. If None is passed in the current axes\n will be used (or generated if required).\n\n features : list, default: None\n a list of feature names to use\n If a DataFrame is passed to fit and features is None, feature\n names are selected as the columns of the DataFrame.\n\n classes : list, default: None\n a list of class names for the legend\n If classes is None and a y value is passed to fit then the classes\n are selected from the target vector.\n\n color : list or tuple, default: None\n optional list or tuple of colors to colorize lines\n Use either color to colorize the lines on a per class basis or\n colormap to color them on a continuous scale.\n\n colormap : string or cmap, default: None\n optional string or matplotlib cmap to colorize lines\n Use either color to colorize the lines on a per class basis or\n colormap to color them on a continuous scale.\n\n kwargs : dict\n Keyword arguments that are passed to the base class and may influence\n the visualization as defined in other Visualizers.\n\n Examples\n --------\n\n >>> visualizer = RadViz()\n >>> visualizer.fit(X, y)\n >>> visualizer.transform(X)\n >>> visualizer.poof()\n\n Notes\n -----\n These parameters can be influenced later on in the visualization\n process, but can and should be set as early as possible.\n \"\"\"\n\n def __init__(self, ax=None, features=None, classes=None, color=None,\n colormap=None, **kwargs):\n super(RadialVisualizer, self).__init__(\n ax, features, classes, color, colormap, **kwargs\n )\n\n @staticmethod\n def normalize(X):\n \"\"\"\n MinMax normalization to fit a matrix in the space [0,1] by column.\n \"\"\"\n a = X.min(axis=0)\n b = X.max(axis=0)\n return (X - a[np.newaxis, :]) / ((b - a)[np.newaxis, :])\n\n def draw(self, X, y, **kwargs):\n \"\"\"\n Called from the fit method, this method creates the radviz canvas and\n draws each instance as a class or target colored point, whose location\n is determined by the feature data set.\n \"\"\"\n # Convert from dataframe\n if is_dataframe(X):\n X = X.as_matrix()\n\n # Clean out nans and warn that the user they aren't plotted\n nan_warnings.warn_if_nans_exist(X)\n X, y = nan_warnings.filter_missing(X, y)\n\n # Get the shape of the data\n nrows, ncols = X.shape\n\n # Set the axes limits\n self.ax.set_xlim([-1,1])\n self.ax.set_ylim([-1,1])\n\n # Create the colors\n # TODO: Allow both colormap, listed colors, and palette definition\n # TODO: Make this an independent function or property for override!\n color_values = resolve_colors(\n n_colors=len(self.classes_), colormap=self.colormap, colors=self.color\n )\n colors = dict(zip(self.classes_, color_values))\n\n # Create a data structure to hold scatter plot representations\n to_plot = {}\n for kls in self.classes_:\n to_plot[kls] = [[], []]\n\n # Compute the arcs around the circumference for each feature axis\n # TODO: make this an independent function for override\n s = np.array([\n (np.cos(t), np.sin(t))\n for t in [\n 2.0 * np.pi * (i / float(ncols))\n for i in range(ncols)\n ]\n ])\n\n # Compute the locations of the scatter plot for each class\n # Normalize the data first to plot along the 0, 1 axis\n for i, row in enumerate(self.normalize(X)):\n row_ = np.repeat(np.expand_dims(row, axis=1), 2, axis=1)\n xy = (s * row_).sum(axis=0) / row.sum()\n kls = self.classes_[y[i]]\n\n to_plot[kls][0].append(xy[0])\n to_plot[kls][1].append(xy[1])\n\n # Add the scatter plots from the to_plot function\n # TODO: store these plots to add more instances to later\n # TODO: make this a separate function\n for i, kls in enumerate(self.classes_):\n self.ax.scatter(to_plot[kls][0], to_plot[kls][1], color=colors[kls], label=str(kls), **kwargs)\n\n # Add the circular axis path\n # TODO: Make this a seperate function (along with labeling)\n self.ax.add_patch(patches.Circle((0.0, 0.0), radius=1.0, facecolor='none', edgecolor='grey', linewidth=.5 ))\n\n # Add the feature names\n for xy, name in zip(s, self.features_):\n # Add the patch indicating the location of the axis\n self.ax.add_patch(patches.Circle(xy, radius=0.025, facecolor='#777777'))\n\n # Add the feature names offset around the axis marker\n if xy[0] < 0.0 and xy[1] < 0.0:\n self.ax.text(xy[0] - 0.025, xy[1] - 0.025, name, ha='right', va='top', size='small')\n elif xy[0] < 0.0 and xy[1] >= 0.0:\n self.ax.text(xy[0] - 0.025, xy[1] + 0.025, name, ha='right', va='bottom', size='small')\n elif xy[0] >= 0.0 and xy[1] < 0.0:\n self.ax.text(xy[0] + 0.025, xy[1] - 0.025, name, ha='left', va='top', size='small')\n elif xy[0] >= 0.0 and xy[1] >= 0.0:\n self.ax.text(xy[0] + 0.025, xy[1] + 0.025, name, ha='left', va='bottom', size='small')\n\n self.ax.axis('equal')\n\n def finalize(self, **kwargs):\n \"\"\"\n Finalize executes any subclass-specific axes finalization steps.\n The user calls poof and poof calls finalize.\n\n Parameters\n ----------\n kwargs: generic keyword arguments.\n\n \"\"\"\n # Set the title\n self.set_title(\n 'RadViz for {} Features'.format(len(self.features_))\n )\n\n # Remove the ticks from the graph\n self.ax.set_yticks([])\n self.ax.set_xticks([])\n\n # Add the legend\n self.ax.legend(loc='best')\n\n\n# Alias for RadViz\nRadViz = RadialVisualizer\n", "path": "yellowbrick/features/radviz.py"}]} | 3,419 | 289 |
gh_patches_debug_41135 | rasdani/github-patches | git_diff | Pyomo__pyomo-2324 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
contrib.deactivate_trivial_constraints can miss trivial constraints
## Summary
The `contrib.deactivate_trivial_constraints` transformation uses the polynomial degree of the constraint expression to decide if the expression is constant. That's not actually a reliable method of doing so, meaning that it can miss trivial constraints like in the example below, where the polynomial degree of the constraint body evaluates to 1.
### Steps to reproduce the issue
```
from pyomo.environ import *
m = ConcreteModel()
m.x = Var()
m.y = Var()
m.y.fix(0)
m.c = Constraint(expr=m.x*m.y >= 0)
TransformationFactory('contrib.deactivate_trivial_constraints').apply_to(m)
print(m.c.active) # True
```
### Information on your system
Pyomo version: main
Python version: 3.8
Operating system: linux
How Pyomo was installed (PyPI, conda, source): source
Solver (if applicable):
### Additional information
I think you could use `generate_standard_repn` to actually detect if a constraint body is constant. This isn't a bug in the sense that it does the wrong thing, but it does fall short on its promises.
</issue>
<code>
[start of pyomo/contrib/preprocessing/plugins/remove_zero_terms.py]
1 # ___________________________________________________________________________
2 #
3 # Pyomo: Python Optimization Modeling Objects
4 # Copyright 2017 National Technology and Engineering Solutions of Sandia, LLC
5 # Under the terms of Contract DE-NA0003525 with National Technology and
6 # Engineering Solutions of Sandia, LLC, the U.S. Government retains certain
7 # rights in this software.
8 # This software is distributed under the 3-clause BSD License.
9 # ___________________________________________________________________________
10
11 # -*- coding: UTF-8 -*-
12 """Transformation to remove zero terms from constraints."""
13 from __future__ import division
14
15 from pyomo.core import quicksum
16 from pyomo.core.base.constraint import Constraint
17 from pyomo.core.base.transformation import TransformationFactory
18 from pyomo.core.expr import current as EXPR
19 from pyomo.core.plugins.transform.hierarchy import IsomorphicTransformation
20 from pyomo.repn import generate_standard_repn
21
22
23 @TransformationFactory.register(
24 'contrib.remove_zero_terms',
25 doc="Remove terms 0 * var in constraints")
26 class RemoveZeroTerms(IsomorphicTransformation):
27 """Looks for :math:`0 v` in a constraint and removes it.
28
29 Currently limited to processing linear constraints of the form :math:`x_1 =
30 0 x_3`, occurring as a result of fixing :math:`x_2 = 0`.
31
32 .. note:: TODO: support nonlinear expressions
33
34 """
35
36 def _apply_to(self, model):
37 """Apply the transformation."""
38 m = model
39
40 for constr in m.component_data_objects(
41 ctype=Constraint, active=True, descend_into=True):
42 if not constr.body.polynomial_degree() == 1:
43 continue # we currently only process linear constraints
44 repn = generate_standard_repn(constr.body)
45
46 # get the index of all nonzero coefficient variables
47 nonzero_vars_indx = [
48 i for i, _ in enumerate(repn.linear_vars)
49 if not repn.linear_coefs[i] == 0
50 ]
51 const = repn.constant
52
53 # reconstitute the constraint, including only variable terms with
54 # nonzero coefficients
55 constr_body = quicksum(repn.linear_coefs[i] * repn.linear_vars[i]
56 for i in nonzero_vars_indx) + const
57 if constr.equality:
58 constr.set_value(constr_body == constr.upper)
59 elif constr.has_lb() and not constr.has_ub():
60 constr.set_value(constr_body >= constr.lower)
61 elif constr.has_ub() and not constr.has_lb():
62 constr.set_value(constr_body <= constr.upper)
63 else:
64 # constraint is a bounded inequality of form a <= x <= b.
65 constr.set_value(EXPR.inequality(
66 constr.lower, constr_body, constr.upper))
67
[end of pyomo/contrib/preprocessing/plugins/remove_zero_terms.py]
[start of pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py]
1 # -*- coding: utf-8 -*-
2
3 # ___________________________________________________________________________
4 #
5 # Pyomo: Python Optimization Modeling Objects
6 # Copyright 2017 National Technology and Engineering Solutions of Sandia, LLC
7 # Under the terms of Contract DE-NA0003525 with National Technology and
8 # Engineering Solutions of Sandia, LLC, the U.S. Government retains certain
9 # rights in this software.
10 # This software is distributed under the 3-clause BSD License.
11 # ___________________________________________________________________________
12
13 """Transformation to deactivate trivial constraints."""
14 import logging
15
16 from pyomo.common.collections import ComponentSet
17 from pyomo.common.config import (ConfigBlock, ConfigValue, NonNegativeFloat,
18 add_docstring_list)
19 from pyomo.common.errors import InfeasibleConstraintException
20 from pyomo.core.base.constraint import Constraint
21 from pyomo.core.base.transformation import TransformationFactory
22 from pyomo.core.expr.numvalue import value
23 from pyomo.core.plugins.transform.hierarchy import IsomorphicTransformation
24
25 logger = logging.getLogger('pyomo.contrib.preprocessing')
26
27 @TransformationFactory.register(
28 'contrib.deactivate_trivial_constraints',
29 doc="Deactivate trivial constraints.")
30 class TrivialConstraintDeactivator(IsomorphicTransformation):
31 """Deactivates trivial constraints.
32
33 Trivial constraints take form :math:`k_1 = k_2` or :math:`k_1 \\leq k_2`,
34 where :math:`k_1` and :math:`k_2` are constants. These constraints
35 typically arise when variables are fixed.
36
37 Keyword arguments below are specified for the ``apply_to`` and
38 ``create_using`` functions.
39
40 """
41
42 CONFIG = ConfigBlock("TrivialConstraintDeactivator")
43 CONFIG.declare("tmp", ConfigValue(
44 default=False, domain=bool,
45 description="True to store a set of transformed constraints for future"
46 " reversion of the transformation."
47 ))
48 CONFIG.declare("ignore_infeasible", ConfigValue(
49 default=False, domain=bool,
50 description="True to skip over trivial constraints that are "
51 "infeasible instead of raising an InfeasibleConstraintException."
52 ))
53 CONFIG.declare("return_trivial", ConfigValue(
54 default=[],
55 description="a list to which the deactivated trivial"
56 "constraints are appended (side effect)"
57 ))
58 CONFIG.declare("tolerance", ConfigValue(
59 default=1E-13, domain=NonNegativeFloat,
60 description="tolerance on constraint violations"
61 ))
62
63 __doc__ = add_docstring_list(__doc__, CONFIG)
64
65
66 def _apply_to(self, instance, **kwargs):
67 config = self.CONFIG(kwargs)
68 if config.tmp and not hasattr(instance, '_tmp_trivial_deactivated_constrs'):
69 instance._tmp_trivial_deactivated_constrs = ComponentSet()
70 elif config.tmp:
71 logger.warning(
72 'Deactivating trivial constraints on the block {} for which '
73 'trivial constraints were previously deactivated. '
74 'Reversion will affect all deactivated constraints.'.format(
75 instance.name))
76
77 # Trivial constraints are those that do not contain any variables, ie.
78 # the polynomial degree is 0
79 trivial_constraints = (
80 constr
81 for constr in instance.component_data_objects(
82 ctype=Constraint, active=True, descend_into=True)
83 if constr.body.polynomial_degree() == 0)
84
85 for constr in trivial_constraints:
86 # We need to check each constraint to sure that it is not violated.
87 constr_lb = value(
88 constr.lower) if constr.has_lb() else float('-inf')
89 constr_ub = value(
90 constr.upper) if constr.has_ub() else float('inf')
91 constr_value = value(constr.body)
92
93 # Check if the lower bound is violated outside a given tolerance
94 if (constr_value + config.tolerance <= constr_lb):
95 if config.ignore_infeasible:
96 continue
97 else:
98 raise InfeasibleConstraintException(
99 'Trivial constraint {} violates LB {} ≤ BODY {}.'
100 .format(constr.name, constr_lb, constr_value))
101
102 # Check if the upper bound is violated outside a given tolerance
103 if (constr_value >= constr_ub + config.tolerance):
104 if config.ignore_infeasible:
105 continue
106 else:
107 raise InfeasibleConstraintException(
108 'Trivial constraint {} violates BODY {} ≤ UB {}.'
109 .format(constr.name, constr_value, constr_ub))
110
111 # Constraint is not infeasible. Deactivate it.
112 if config.tmp:
113 instance._tmp_trivial_deactivated_constrs.add(constr)
114 config.return_trivial.append(constr)
115 constr.deactivate()
116
117 def revert(self, instance):
118 """Revert constraints deactivated by the transformation.
119
120 Args:
121 instance: the model instance on which trivial constraints were
122 earlier deactivated.
123 """
124 for constr in instance._tmp_trivial_deactivated_constrs:
125 constr.activate()
126 del instance._tmp_trivial_deactivated_constrs
127
[end of pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py b/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py
--- a/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py
+++ b/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py
@@ -21,6 +21,7 @@
from pyomo.core.base.transformation import TransformationFactory
from pyomo.core.expr.numvalue import value
from pyomo.core.plugins.transform.hierarchy import IsomorphicTransformation
+from pyomo.repn import generate_standard_repn
logger = logging.getLogger('pyomo.contrib.preprocessing')
@@ -65,7 +66,8 @@
def _apply_to(self, instance, **kwargs):
config = self.CONFIG(kwargs)
- if config.tmp and not hasattr(instance, '_tmp_trivial_deactivated_constrs'):
+ if config.tmp and not hasattr(instance,
+ '_tmp_trivial_deactivated_constrs'):
instance._tmp_trivial_deactivated_constrs = ComponentSet()
elif config.tmp:
logger.warning(
@@ -76,19 +78,20 @@
# Trivial constraints are those that do not contain any variables, ie.
# the polynomial degree is 0
- trivial_constraints = (
- constr
- for constr in instance.component_data_objects(
- ctype=Constraint, active=True, descend_into=True)
- if constr.body.polynomial_degree() == 0)
+ for constr in instance.component_data_objects(ctype=Constraint,
+ active=True,
+ descend_into=True):
+ repn = generate_standard_repn(constr.body)
+ if not repn.is_constant():
+ # This constraint is not trivial
+ continue
- for constr in trivial_constraints:
# We need to check each constraint to sure that it is not violated.
constr_lb = value(
constr.lower) if constr.has_lb() else float('-inf')
constr_ub = value(
constr.upper) if constr.has_ub() else float('inf')
- constr_value = value(constr.body)
+ constr_value = repn.constant
# Check if the lower bound is violated outside a given tolerance
if (constr_value + config.tolerance <= constr_lb):
diff --git a/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py b/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py
--- a/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py
+++ b/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py
@@ -39,9 +39,12 @@
for constr in m.component_data_objects(
ctype=Constraint, active=True, descend_into=True):
- if not constr.body.polynomial_degree() == 1:
- continue # we currently only process linear constraints
repn = generate_standard_repn(constr.body)
+ if not repn.is_linear() or repn.is_constant():
+ continue # we currently only process linear constraints, and we
+ # assume that trivial constraints have already been
+ # deactivated or will be deactivated in a different
+ # step
# get the index of all nonzero coefficient variables
nonzero_vars_indx = [
| {"golden_diff": "diff --git a/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py b/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py\n--- a/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py\n+++ b/pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py\n@@ -21,6 +21,7 @@\n from pyomo.core.base.transformation import TransformationFactory\n from pyomo.core.expr.numvalue import value\n from pyomo.core.plugins.transform.hierarchy import IsomorphicTransformation\n+from pyomo.repn import generate_standard_repn\n \n logger = logging.getLogger('pyomo.contrib.preprocessing')\n \n@@ -65,7 +66,8 @@\n \n def _apply_to(self, instance, **kwargs):\n config = self.CONFIG(kwargs)\n- if config.tmp and not hasattr(instance, '_tmp_trivial_deactivated_constrs'):\n+ if config.tmp and not hasattr(instance,\n+ '_tmp_trivial_deactivated_constrs'):\n instance._tmp_trivial_deactivated_constrs = ComponentSet()\n elif config.tmp:\n logger.warning(\n@@ -76,19 +78,20 @@\n \n # Trivial constraints are those that do not contain any variables, ie.\n # the polynomial degree is 0\n- trivial_constraints = (\n- constr\n- for constr in instance.component_data_objects(\n- ctype=Constraint, active=True, descend_into=True)\n- if constr.body.polynomial_degree() == 0)\n+ for constr in instance.component_data_objects(ctype=Constraint,\n+ active=True,\n+ descend_into=True):\n+ repn = generate_standard_repn(constr.body)\n+ if not repn.is_constant():\n+ # This constraint is not trivial\n+ continue\n \n- for constr in trivial_constraints:\n # We need to check each constraint to sure that it is not violated.\n constr_lb = value(\n constr.lower) if constr.has_lb() else float('-inf')\n constr_ub = value(\n constr.upper) if constr.has_ub() else float('inf')\n- constr_value = value(constr.body)\n+ constr_value = repn.constant\n \n # Check if the lower bound is violated outside a given tolerance\n if (constr_value + config.tolerance <= constr_lb):\ndiff --git a/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py b/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py\n--- a/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py\n+++ b/pyomo/contrib/preprocessing/plugins/remove_zero_terms.py\n@@ -39,9 +39,12 @@\n \n for constr in m.component_data_objects(\n ctype=Constraint, active=True, descend_into=True):\n- if not constr.body.polynomial_degree() == 1:\n- continue # we currently only process linear constraints\n repn = generate_standard_repn(constr.body)\n+ if not repn.is_linear() or repn.is_constant():\n+ continue # we currently only process linear constraints, and we\n+ # assume that trivial constraints have already been\n+ # deactivated or will be deactivated in a different\n+ # step\n \n # get the index of all nonzero coefficient variables\n nonzero_vars_indx = [\n", "issue": "contrib.deactivate_trivial_constraints can miss trivial constraints\n## Summary\r\n\r\nThe `contrib.deactivate_trivial_constraints` transformation uses the polynomial degree of the constraint expression to decide if the expression is constant. That's not actually a reliable method of doing so, meaning that it can miss trivial constraints like in the example below, where the polynomial degree of the constraint body evaluates to 1.\r\n\r\n### Steps to reproduce the issue\r\n\r\n```\r\nfrom pyomo.environ import *\r\n\r\nm = ConcreteModel()\r\nm.x = Var()\r\nm.y = Var()\r\nm.y.fix(0)\r\nm.c = Constraint(expr=m.x*m.y >= 0)\r\n\r\nTransformationFactory('contrib.deactivate_trivial_constraints').apply_to(m)\r\n\r\nprint(m.c.active) # True\r\n```\r\n\r\n### Information on your system\r\n\r\nPyomo version: main\r\nPython version: 3.8\r\nOperating system: linux\r\nHow Pyomo was installed (PyPI, conda, source): source\r\nSolver (if applicable):\r\n\r\n\r\n### Additional information\r\n\r\nI think you could use `generate_standard_repn` to actually detect if a constraint body is constant. This isn't a bug in the sense that it does the wrong thing, but it does fall short on its promises.\r\n\n", "before_files": [{"content": "# ___________________________________________________________________________\n#\n# Pyomo: Python Optimization Modeling Objects\n# Copyright 2017 National Technology and Engineering Solutions of Sandia, LLC\n# Under the terms of Contract DE-NA0003525 with National Technology and \n# Engineering Solutions of Sandia, LLC, the U.S. Government retains certain \n# rights in this software.\n# This software is distributed under the 3-clause BSD License.\n# ___________________________________________________________________________\n\n# -*- coding: UTF-8 -*-\n\"\"\"Transformation to remove zero terms from constraints.\"\"\"\nfrom __future__ import division\n\nfrom pyomo.core import quicksum\nfrom pyomo.core.base.constraint import Constraint\nfrom pyomo.core.base.transformation import TransformationFactory\nfrom pyomo.core.expr import current as EXPR\nfrom pyomo.core.plugins.transform.hierarchy import IsomorphicTransformation\nfrom pyomo.repn import generate_standard_repn\n\n\[email protected](\n 'contrib.remove_zero_terms',\n doc=\"Remove terms 0 * var in constraints\")\nclass RemoveZeroTerms(IsomorphicTransformation):\n \"\"\"Looks for :math:`0 v` in a constraint and removes it.\n\n Currently limited to processing linear constraints of the form :math:`x_1 =\n 0 x_3`, occurring as a result of fixing :math:`x_2 = 0`.\n\n .. note:: TODO: support nonlinear expressions\n\n \"\"\"\n\n def _apply_to(self, model):\n \"\"\"Apply the transformation.\"\"\"\n m = model\n\n for constr in m.component_data_objects(\n ctype=Constraint, active=True, descend_into=True):\n if not constr.body.polynomial_degree() == 1:\n continue # we currently only process linear constraints\n repn = generate_standard_repn(constr.body)\n\n # get the index of all nonzero coefficient variables\n nonzero_vars_indx = [\n i for i, _ in enumerate(repn.linear_vars)\n if not repn.linear_coefs[i] == 0\n ]\n const = repn.constant\n\n # reconstitute the constraint, including only variable terms with\n # nonzero coefficients\n constr_body = quicksum(repn.linear_coefs[i] * repn.linear_vars[i]\n for i in nonzero_vars_indx) + const\n if constr.equality:\n constr.set_value(constr_body == constr.upper)\n elif constr.has_lb() and not constr.has_ub():\n constr.set_value(constr_body >= constr.lower)\n elif constr.has_ub() and not constr.has_lb():\n constr.set_value(constr_body <= constr.upper)\n else:\n # constraint is a bounded inequality of form a <= x <= b.\n constr.set_value(EXPR.inequality(\n constr.lower, constr_body, constr.upper))\n", "path": "pyomo/contrib/preprocessing/plugins/remove_zero_terms.py"}, {"content": "# -*- coding: utf-8 -*-\n\n# ___________________________________________________________________________\n#\n# Pyomo: Python Optimization Modeling Objects\n# Copyright 2017 National Technology and Engineering Solutions of Sandia, LLC\n# Under the terms of Contract DE-NA0003525 with National Technology and \n# Engineering Solutions of Sandia, LLC, the U.S. Government retains certain \n# rights in this software.\n# This software is distributed under the 3-clause BSD License.\n# ___________________________________________________________________________\n\n\"\"\"Transformation to deactivate trivial constraints.\"\"\"\nimport logging\n\nfrom pyomo.common.collections import ComponentSet\nfrom pyomo.common.config import (ConfigBlock, ConfigValue, NonNegativeFloat,\n add_docstring_list)\nfrom pyomo.common.errors import InfeasibleConstraintException\nfrom pyomo.core.base.constraint import Constraint\nfrom pyomo.core.base.transformation import TransformationFactory\nfrom pyomo.core.expr.numvalue import value\nfrom pyomo.core.plugins.transform.hierarchy import IsomorphicTransformation\n\nlogger = logging.getLogger('pyomo.contrib.preprocessing')\n\[email protected](\n 'contrib.deactivate_trivial_constraints',\n doc=\"Deactivate trivial constraints.\")\nclass TrivialConstraintDeactivator(IsomorphicTransformation):\n \"\"\"Deactivates trivial constraints.\n\n Trivial constraints take form :math:`k_1 = k_2` or :math:`k_1 \\\\leq k_2`,\n where :math:`k_1` and :math:`k_2` are constants. These constraints\n typically arise when variables are fixed.\n\n Keyword arguments below are specified for the ``apply_to`` and\n ``create_using`` functions.\n\n \"\"\"\n\n CONFIG = ConfigBlock(\"TrivialConstraintDeactivator\")\n CONFIG.declare(\"tmp\", ConfigValue(\n default=False, domain=bool,\n description=\"True to store a set of transformed constraints for future\"\n \" reversion of the transformation.\"\n ))\n CONFIG.declare(\"ignore_infeasible\", ConfigValue(\n default=False, domain=bool,\n description=\"True to skip over trivial constraints that are \"\n \"infeasible instead of raising an InfeasibleConstraintException.\"\n ))\n CONFIG.declare(\"return_trivial\", ConfigValue(\n default=[],\n description=\"a list to which the deactivated trivial\"\n \"constraints are appended (side effect)\"\n ))\n CONFIG.declare(\"tolerance\", ConfigValue(\n default=1E-13, domain=NonNegativeFloat,\n description=\"tolerance on constraint violations\"\n ))\n\n __doc__ = add_docstring_list(__doc__, CONFIG)\n\n\n def _apply_to(self, instance, **kwargs):\n config = self.CONFIG(kwargs)\n if config.tmp and not hasattr(instance, '_tmp_trivial_deactivated_constrs'):\n instance._tmp_trivial_deactivated_constrs = ComponentSet()\n elif config.tmp:\n logger.warning(\n 'Deactivating trivial constraints on the block {} for which '\n 'trivial constraints were previously deactivated. '\n 'Reversion will affect all deactivated constraints.'.format(\n instance.name))\n\n # Trivial constraints are those that do not contain any variables, ie.\n # the polynomial degree is 0\n trivial_constraints = (\n constr\n for constr in instance.component_data_objects(\n ctype=Constraint, active=True, descend_into=True)\n if constr.body.polynomial_degree() == 0)\n\n for constr in trivial_constraints:\n # We need to check each constraint to sure that it is not violated.\n constr_lb = value(\n constr.lower) if constr.has_lb() else float('-inf')\n constr_ub = value(\n constr.upper) if constr.has_ub() else float('inf')\n constr_value = value(constr.body)\n\n # Check if the lower bound is violated outside a given tolerance\n if (constr_value + config.tolerance <= constr_lb):\n if config.ignore_infeasible:\n continue\n else:\n raise InfeasibleConstraintException(\n 'Trivial constraint {} violates LB {} \u2264 BODY {}.'\n .format(constr.name, constr_lb, constr_value))\n\n # Check if the upper bound is violated outside a given tolerance\n if (constr_value >= constr_ub + config.tolerance):\n if config.ignore_infeasible:\n continue\n else:\n raise InfeasibleConstraintException(\n 'Trivial constraint {} violates BODY {} \u2264 UB {}.'\n .format(constr.name, constr_value, constr_ub))\n\n # Constraint is not infeasible. Deactivate it.\n if config.tmp:\n instance._tmp_trivial_deactivated_constrs.add(constr)\n config.return_trivial.append(constr)\n constr.deactivate()\n\n def revert(self, instance):\n \"\"\"Revert constraints deactivated by the transformation.\n\n Args:\n instance: the model instance on which trivial constraints were\n earlier deactivated.\n \"\"\"\n for constr in instance._tmp_trivial_deactivated_constrs:\n constr.activate()\n del instance._tmp_trivial_deactivated_constrs\n", "path": "pyomo/contrib/preprocessing/plugins/deactivate_trivial_constraints.py"}]} | 2,878 | 692 |
gh_patches_debug_29826 | rasdani/github-patches | git_diff | getsentry__sentry-python-593 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Memory leak introduced in 0.12.3
Dear maintainers,
I recently noticed that my application containers started going out of memory fairly quickly. Upon investigation, I found that recent upgrade of sentry-sdk was causing this.
Tested with a few versions of sentry-sdk using Python 3.7.6:
sentry-sdk==0.12.2 -> memory usage stays at ~70 MiB, does not raise
sentry-sdk==0.12.3
sentry-sdk==0.13.5
sentry-sdk @ master
-> memory usage starts from ~70MiB and raises steadily until reaching memory limit and crashes container.
Please see if you can reproduce this behaviour. If not, I'll try to put up a minimal reproducible example, but this should be fairly simple to see. My application does not do anything special really, just receives some millions of messages over MQ and out of those, some few thousands end up getting logged to Sentry due to exceptions occurring. This is using pretty much the default Sentry config, no integrations.
Thanks for your help!
</issue>
<code>
[start of sentry_sdk/worker.py]
1 import os
2
3 from threading import Thread, Lock
4 from time import sleep, time
5 from sentry_sdk._compat import queue, check_thread_support
6 from sentry_sdk.utils import logger
7
8
9 from sentry_sdk._types import MYPY
10
11 if MYPY:
12 from queue import Queue
13 from typing import Any
14 from typing import Optional
15 from typing import Callable
16
17
18 _TERMINATOR = object()
19
20
21 class BackgroundWorker(object):
22 def __init__(self):
23 # type: () -> None
24 check_thread_support()
25 self._queue = queue.Queue(-1) # type: Queue[Any]
26 self._lock = Lock()
27 self._thread = None # type: Optional[Thread]
28 self._thread_for_pid = None # type: Optional[int]
29
30 @property
31 def is_alive(self):
32 # type: () -> bool
33 if self._thread_for_pid != os.getpid():
34 return False
35 if not self._thread:
36 return False
37 return self._thread.is_alive()
38
39 def _ensure_thread(self):
40 # type: () -> None
41 if not self.is_alive:
42 self.start()
43
44 def _timed_queue_join(self, timeout):
45 # type: (float) -> bool
46 deadline = time() + timeout
47 queue = self._queue
48
49 real_all_tasks_done = getattr(
50 queue, "all_tasks_done", None
51 ) # type: Optional[Any]
52 if real_all_tasks_done is not None:
53 real_all_tasks_done.acquire()
54 all_tasks_done = real_all_tasks_done # type: Optional[Any]
55 elif queue.__module__.startswith("eventlet."):
56 all_tasks_done = getattr(queue, "_cond", None)
57 else:
58 all_tasks_done = None
59
60 try:
61 while queue.unfinished_tasks:
62 delay = deadline - time()
63 if delay <= 0:
64 return False
65 if all_tasks_done is not None:
66 all_tasks_done.wait(timeout=delay)
67 else:
68 # worst case, we just poll the number of remaining tasks
69 sleep(0.1)
70
71 return True
72 finally:
73 if real_all_tasks_done is not None:
74 real_all_tasks_done.release()
75
76 def start(self):
77 # type: () -> None
78 with self._lock:
79 if not self.is_alive:
80 self._thread = Thread(
81 target=self._target, name="raven-sentry.BackgroundWorker"
82 )
83 self._thread.setDaemon(True)
84 self._thread.start()
85 self._thread_for_pid = os.getpid()
86
87 def kill(self):
88 # type: () -> None
89 logger.debug("background worker got kill request")
90 with self._lock:
91 if self._thread:
92 self._queue.put_nowait(_TERMINATOR)
93 self._thread = None
94 self._thread_for_pid = None
95
96 def flush(self, timeout, callback=None):
97 # type: (float, Optional[Any]) -> None
98 logger.debug("background worker got flush request")
99 with self._lock:
100 if self.is_alive and timeout > 0.0:
101 self._wait_flush(timeout, callback)
102 logger.debug("background worker flushed")
103
104 def _wait_flush(self, timeout, callback):
105 # type: (float, Optional[Any]) -> None
106 initial_timeout = min(0.1, timeout)
107 if not self._timed_queue_join(initial_timeout):
108 pending = self._queue.qsize()
109 logger.debug("%d event(s) pending on flush", pending)
110 if callback is not None:
111 callback(pending, timeout)
112 self._timed_queue_join(timeout - initial_timeout)
113
114 def submit(self, callback):
115 # type: (Callable[[], None]) -> None
116 self._ensure_thread()
117 self._queue.put_nowait(callback)
118
119 def _target(self):
120 # type: () -> None
121 while True:
122 callback = self._queue.get()
123 try:
124 if callback is _TERMINATOR:
125 break
126 try:
127 callback()
128 except Exception:
129 logger.error("Failed processing job", exc_info=True)
130 finally:
131 self._queue.task_done()
132 sleep(0)
133
[end of sentry_sdk/worker.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/sentry_sdk/worker.py b/sentry_sdk/worker.py
--- a/sentry_sdk/worker.py
+++ b/sentry_sdk/worker.py
@@ -22,7 +22,7 @@
def __init__(self):
# type: () -> None
check_thread_support()
- self._queue = queue.Queue(-1) # type: Queue[Any]
+ self._queue = queue.Queue(30) # type: Queue[Any]
self._lock = Lock()
self._thread = None # type: Optional[Thread]
self._thread_for_pid = None # type: Optional[int]
@@ -86,10 +86,18 @@
def kill(self):
# type: () -> None
+ """
+ Kill worker thread. Returns immediately. Not useful for
+ waiting on shutdown for events, use `flush` for that.
+ """
logger.debug("background worker got kill request")
with self._lock:
if self._thread:
- self._queue.put_nowait(_TERMINATOR)
+ try:
+ self._queue.put_nowait(_TERMINATOR)
+ except queue.Full:
+ logger.debug("background worker queue full, kill failed")
+
self._thread = None
self._thread_for_pid = None
@@ -114,7 +122,10 @@
def submit(self, callback):
# type: (Callable[[], None]) -> None
self._ensure_thread()
- self._queue.put_nowait(callback)
+ try:
+ self._queue.put_nowait(callback)
+ except queue.Full:
+ logger.debug("background worker queue full, dropping event")
def _target(self):
# type: () -> None
| {"golden_diff": "diff --git a/sentry_sdk/worker.py b/sentry_sdk/worker.py\n--- a/sentry_sdk/worker.py\n+++ b/sentry_sdk/worker.py\n@@ -22,7 +22,7 @@\n def __init__(self):\n # type: () -> None\n check_thread_support()\n- self._queue = queue.Queue(-1) # type: Queue[Any]\n+ self._queue = queue.Queue(30) # type: Queue[Any]\n self._lock = Lock()\n self._thread = None # type: Optional[Thread]\n self._thread_for_pid = None # type: Optional[int]\n@@ -86,10 +86,18 @@\n \n def kill(self):\n # type: () -> None\n+ \"\"\"\n+ Kill worker thread. Returns immediately. Not useful for\n+ waiting on shutdown for events, use `flush` for that.\n+ \"\"\"\n logger.debug(\"background worker got kill request\")\n with self._lock:\n if self._thread:\n- self._queue.put_nowait(_TERMINATOR)\n+ try:\n+ self._queue.put_nowait(_TERMINATOR)\n+ except queue.Full:\n+ logger.debug(\"background worker queue full, kill failed\")\n+\n self._thread = None\n self._thread_for_pid = None\n \n@@ -114,7 +122,10 @@\n def submit(self, callback):\n # type: (Callable[[], None]) -> None\n self._ensure_thread()\n- self._queue.put_nowait(callback)\n+ try:\n+ self._queue.put_nowait(callback)\n+ except queue.Full:\n+ logger.debug(\"background worker queue full, dropping event\")\n \n def _target(self):\n # type: () -> None\n", "issue": "Memory leak introduced in 0.12.3\nDear maintainers,\r\n\r\nI recently noticed that my application containers started going out of memory fairly quickly. Upon investigation, I found that recent upgrade of sentry-sdk was causing this.\r\n\r\nTested with a few versions of sentry-sdk using Python 3.7.6:\r\nsentry-sdk==0.12.2 -> memory usage stays at ~70 MiB, does not raise\r\n\r\nsentry-sdk==0.12.3\r\nsentry-sdk==0.13.5\r\nsentry-sdk @ master\r\n-> memory usage starts from ~70MiB and raises steadily until reaching memory limit and crashes container.\r\n\r\nPlease see if you can reproduce this behaviour. If not, I'll try to put up a minimal reproducible example, but this should be fairly simple to see. My application does not do anything special really, just receives some millions of messages over MQ and out of those, some few thousands end up getting logged to Sentry due to exceptions occurring. This is using pretty much the default Sentry config, no integrations.\r\n\r\nThanks for your help!\n", "before_files": [{"content": "import os\n\nfrom threading import Thread, Lock\nfrom time import sleep, time\nfrom sentry_sdk._compat import queue, check_thread_support\nfrom sentry_sdk.utils import logger\n\n\nfrom sentry_sdk._types import MYPY\n\nif MYPY:\n from queue import Queue\n from typing import Any\n from typing import Optional\n from typing import Callable\n\n\n_TERMINATOR = object()\n\n\nclass BackgroundWorker(object):\n def __init__(self):\n # type: () -> None\n check_thread_support()\n self._queue = queue.Queue(-1) # type: Queue[Any]\n self._lock = Lock()\n self._thread = None # type: Optional[Thread]\n self._thread_for_pid = None # type: Optional[int]\n\n @property\n def is_alive(self):\n # type: () -> bool\n if self._thread_for_pid != os.getpid():\n return False\n if not self._thread:\n return False\n return self._thread.is_alive()\n\n def _ensure_thread(self):\n # type: () -> None\n if not self.is_alive:\n self.start()\n\n def _timed_queue_join(self, timeout):\n # type: (float) -> bool\n deadline = time() + timeout\n queue = self._queue\n\n real_all_tasks_done = getattr(\n queue, \"all_tasks_done\", None\n ) # type: Optional[Any]\n if real_all_tasks_done is not None:\n real_all_tasks_done.acquire()\n all_tasks_done = real_all_tasks_done # type: Optional[Any]\n elif queue.__module__.startswith(\"eventlet.\"):\n all_tasks_done = getattr(queue, \"_cond\", None)\n else:\n all_tasks_done = None\n\n try:\n while queue.unfinished_tasks:\n delay = deadline - time()\n if delay <= 0:\n return False\n if all_tasks_done is not None:\n all_tasks_done.wait(timeout=delay)\n else:\n # worst case, we just poll the number of remaining tasks\n sleep(0.1)\n\n return True\n finally:\n if real_all_tasks_done is not None:\n real_all_tasks_done.release()\n\n def start(self):\n # type: () -> None\n with self._lock:\n if not self.is_alive:\n self._thread = Thread(\n target=self._target, name=\"raven-sentry.BackgroundWorker\"\n )\n self._thread.setDaemon(True)\n self._thread.start()\n self._thread_for_pid = os.getpid()\n\n def kill(self):\n # type: () -> None\n logger.debug(\"background worker got kill request\")\n with self._lock:\n if self._thread:\n self._queue.put_nowait(_TERMINATOR)\n self._thread = None\n self._thread_for_pid = None\n\n def flush(self, timeout, callback=None):\n # type: (float, Optional[Any]) -> None\n logger.debug(\"background worker got flush request\")\n with self._lock:\n if self.is_alive and timeout > 0.0:\n self._wait_flush(timeout, callback)\n logger.debug(\"background worker flushed\")\n\n def _wait_flush(self, timeout, callback):\n # type: (float, Optional[Any]) -> None\n initial_timeout = min(0.1, timeout)\n if not self._timed_queue_join(initial_timeout):\n pending = self._queue.qsize()\n logger.debug(\"%d event(s) pending on flush\", pending)\n if callback is not None:\n callback(pending, timeout)\n self._timed_queue_join(timeout - initial_timeout)\n\n def submit(self, callback):\n # type: (Callable[[], None]) -> None\n self._ensure_thread()\n self._queue.put_nowait(callback)\n\n def _target(self):\n # type: () -> None\n while True:\n callback = self._queue.get()\n try:\n if callback is _TERMINATOR:\n break\n try:\n callback()\n except Exception:\n logger.error(\"Failed processing job\", exc_info=True)\n finally:\n self._queue.task_done()\n sleep(0)\n", "path": "sentry_sdk/worker.py"}]} | 1,960 | 390 |
gh_patches_debug_2409 | rasdani/github-patches | git_diff | mkdocs__mkdocs-708 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Remove unicode_literals import in the CLI code
Looks like this can cause some issues with Click, I've not seen any but we should probably remove it anyway or we will start to get warnings from Click 5.0.
https://github.com/mitsuhiko/click/commit/5f337705f68bdfa66d7c7a9fe7fc5d6bfd48db94
</issue>
<code>
[start of mkdocs/__main__.py]
1 #!/usr/bin/env python
2 # coding: utf-8
3
4 from __future__ import unicode_literals
5 import logging
6 import click
7 import socket
8
9 from mkdocs import __version__
10 from mkdocs import utils
11 from mkdocs import exceptions
12 from mkdocs.config import load_config
13 from mkdocs.commands import build, gh_deploy, new, serve
14
15 log = logging.getLogger(__name__)
16
17
18 class State(object):
19 ''' Maintain logging level.'''
20
21 def __init__(self, log_name='mkdocs', level=logging.INFO):
22 self.logger = logging.getLogger(log_name)
23 self.logger.propagate = False
24 stream = logging.StreamHandler()
25 formatter = logging.Formatter("%(levelname)-7s - %(message)s ")
26 stream.setFormatter(formatter)
27 self.logger.addHandler(stream)
28
29 self.logger.setLevel(level)
30
31
32 pass_state = click.make_pass_decorator(State, ensure=True)
33
34
35 def verbose_option(f):
36 def callback(ctx, param, value):
37 state = ctx.ensure_object(State)
38 if value:
39 state.logger.setLevel(logging.DEBUG)
40 return click.option('-v', '--verbose',
41 is_flag=True,
42 expose_value=False,
43 help='Enable verbose output',
44 callback=callback)(f)
45
46
47 def quiet_option(f):
48 def callback(ctx, param, value):
49 state = ctx.ensure_object(State)
50 if value:
51 state.logger.setLevel(logging.ERROR)
52 return click.option('-q', '--quiet',
53 is_flag=True,
54 expose_value=False,
55 help='Silence warnings',
56 callback=callback)(f)
57
58
59 def common_options(f):
60 f = verbose_option(f)
61 f = quiet_option(f)
62 return f
63
64
65 clean_help = "Remove old files from the site_dir before building"
66 config_help = "Provide a specific MkDocs config"
67 dev_addr_help = ("IP address and port to serve documentation locally (default: "
68 "localhost:8000)")
69 strict_help = ("Enable strict mode. This will cause MkDocs to abort the build "
70 "on any warnings.")
71 theme_help = "The theme to use when building your documentation."
72 theme_choices = utils.get_theme_names()
73 site_dir_help = "The directory to output the result of the documentation build."
74 reload_help = "Enable and disable the live reloading in the development server."
75 commit_message_help = ("A commit message to use when commiting to the "
76 "Github Pages remote branch")
77 remote_branch_help = ("The remote branch to commit to for Github Pages. This "
78 "overrides the value specified in config")
79
80
81 @click.group(context_settings={'help_option_names': ['-h', '--help']})
82 @click.version_option(__version__, '-V', '--version')
83 @common_options
84 def cli():
85 """
86 MkDocs - Project documentation with Markdown.
87 """
88
89
90 @cli.command(name="serve")
91 @click.option('-f', '--config-file', type=click.File('rb'), help=config_help)
92 @click.option('-a', '--dev-addr', help=dev_addr_help, metavar='<IP:PORT>')
93 @click.option('-s', '--strict', is_flag=True, help=strict_help)
94 @click.option('-t', '--theme', type=click.Choice(theme_choices), help=theme_help)
95 @click.option('--livereload/--no-livereload', default=True, help=reload_help)
96 @common_options
97 def serve_command(dev_addr, config_file, strict, theme, livereload):
98 """Run the builtin development server"""
99
100 logging.getLogger('tornado').setLevel(logging.WARNING)
101
102 try:
103 serve.serve(
104 config_file=config_file,
105 dev_addr=dev_addr,
106 strict=strict,
107 theme=theme,
108 livereload=livereload,
109 )
110 except (exceptions.ConfigurationError, socket.error) as e:
111 # Avoid ugly, unhelpful traceback
112 raise SystemExit('\n' + str(e))
113
114
115 @cli.command(name="build")
116 @click.option('-c', '--clean', is_flag=True, help=clean_help)
117 @click.option('-f', '--config-file', type=click.File('rb'), help=config_help)
118 @click.option('-s', '--strict', is_flag=True, help=strict_help)
119 @click.option('-t', '--theme', type=click.Choice(theme_choices), help=theme_help)
120 @click.option('-d', '--site-dir', type=click.Path(), help=site_dir_help)
121 @common_options
122 def build_command(clean, config_file, strict, theme, site_dir):
123 """Build the MkDocs documentation"""
124 try:
125 build.build(load_config(
126 config_file=config_file,
127 strict=strict,
128 theme=theme,
129 site_dir=site_dir
130 ), clean_site_dir=clean)
131 except exceptions.ConfigurationError as e:
132 # Avoid ugly, unhelpful traceback
133 raise SystemExit('\n' + str(e))
134
135
136 @cli.command(name="json")
137 @click.option('-c', '--clean', is_flag=True, help=clean_help)
138 @click.option('-f', '--config-file', type=click.File('rb'), help=config_help)
139 @click.option('-s', '--strict', is_flag=True, help=strict_help)
140 @click.option('-d', '--site-dir', type=click.Path(), help=site_dir_help)
141 @common_options
142 def json_command(clean, config_file, strict, site_dir):
143 """Build the MkDocs documentation to JSON files
144
145 Rather than building your documentation to HTML pages, this
146 outputs each page in a simple JSON format. This command is
147 useful if you want to index your documentation in an external
148 search engine.
149 """
150
151 log.warning("The json command is deprecated and will be removed in a "
152 "future MkDocs release. For details on updating: "
153 "http://www.mkdocs.org/about/release-notes/")
154
155 try:
156 build.build(load_config(
157 config_file=config_file,
158 strict=strict,
159 site_dir=site_dir
160 ), dump_json=True, clean_site_dir=clean)
161 except exceptions.ConfigurationError as e:
162 # Avoid ugly, unhelpful traceback
163 raise SystemExit('\n' + str(e))
164
165
166 @cli.command(name="gh-deploy")
167 @click.option('-c', '--clean', is_flag=True, help=clean_help)
168 @click.option('-f', '--config-file', type=click.File('rb'), help=config_help)
169 @click.option('-m', '--message', help=commit_message_help)
170 @click.option('-b', '--remote-branch', help=remote_branch_help)
171 @click.option('-r', '--remote-name', help=remote_branch_help)
172 @common_options
173 def gh_deploy_command(config_file, clean, message, remote_branch, remote_name):
174 """Deploy your documentation to GitHub Pages"""
175 try:
176 config = load_config(
177 config_file=config_file,
178 remote_branch=remote_branch,
179 remote_name=remote_name
180 )
181 build.build(config, clean_site_dir=clean)
182 gh_deploy.gh_deploy(config, message=message)
183 except exceptions.ConfigurationError as e:
184 # Avoid ugly, unhelpful traceback
185 raise SystemExit('\n' + str(e))
186
187
188 @cli.command(name="new")
189 @click.argument("project_directory")
190 @common_options
191 def new_command(project_directory):
192 """Create a new MkDocs project"""
193 new.new(project_directory)
194
195 if __name__ == '__main__':
196 cli()
197
[end of mkdocs/__main__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/mkdocs/__main__.py b/mkdocs/__main__.py
--- a/mkdocs/__main__.py
+++ b/mkdocs/__main__.py
@@ -14,6 +14,11 @@
log = logging.getLogger(__name__)
+# Disable the warning that Click displays (as of Click version 5.0) when users
+# use unicode_literals in Python 2.
+# See http://click.pocoo.org/dev/python3/#unicode-literals for more details.
+click.disable_unicode_literals_warning = True
+
class State(object):
''' Maintain logging level.'''
| {"golden_diff": "diff --git a/mkdocs/__main__.py b/mkdocs/__main__.py\n--- a/mkdocs/__main__.py\n+++ b/mkdocs/__main__.py\n@@ -14,6 +14,11 @@\n \n log = logging.getLogger(__name__)\n \n+# Disable the warning that Click displays (as of Click version 5.0) when users\n+# use unicode_literals in Python 2.\n+# See http://click.pocoo.org/dev/python3/#unicode-literals for more details.\n+click.disable_unicode_literals_warning = True\n+\n \n class State(object):\n ''' Maintain logging level.'''\n", "issue": "Remove unicode_literals import in the CLI code\nLooks like this can cause some issues with Click, I've not seen any but we should probably remove it anyway or we will start to get warnings from Click 5.0.\n\nhttps://github.com/mitsuhiko/click/commit/5f337705f68bdfa66d7c7a9fe7fc5d6bfd48db94\n\n", "before_files": [{"content": "#!/usr/bin/env python\n# coding: utf-8\n\nfrom __future__ import unicode_literals\nimport logging\nimport click\nimport socket\n\nfrom mkdocs import __version__\nfrom mkdocs import utils\nfrom mkdocs import exceptions\nfrom mkdocs.config import load_config\nfrom mkdocs.commands import build, gh_deploy, new, serve\n\nlog = logging.getLogger(__name__)\n\n\nclass State(object):\n ''' Maintain logging level.'''\n\n def __init__(self, log_name='mkdocs', level=logging.INFO):\n self.logger = logging.getLogger(log_name)\n self.logger.propagate = False\n stream = logging.StreamHandler()\n formatter = logging.Formatter(\"%(levelname)-7s - %(message)s \")\n stream.setFormatter(formatter)\n self.logger.addHandler(stream)\n\n self.logger.setLevel(level)\n\n\npass_state = click.make_pass_decorator(State, ensure=True)\n\n\ndef verbose_option(f):\n def callback(ctx, param, value):\n state = ctx.ensure_object(State)\n if value:\n state.logger.setLevel(logging.DEBUG)\n return click.option('-v', '--verbose',\n is_flag=True,\n expose_value=False,\n help='Enable verbose output',\n callback=callback)(f)\n\n\ndef quiet_option(f):\n def callback(ctx, param, value):\n state = ctx.ensure_object(State)\n if value:\n state.logger.setLevel(logging.ERROR)\n return click.option('-q', '--quiet',\n is_flag=True,\n expose_value=False,\n help='Silence warnings',\n callback=callback)(f)\n\n\ndef common_options(f):\n f = verbose_option(f)\n f = quiet_option(f)\n return f\n\n\nclean_help = \"Remove old files from the site_dir before building\"\nconfig_help = \"Provide a specific MkDocs config\"\ndev_addr_help = (\"IP address and port to serve documentation locally (default: \"\n \"localhost:8000)\")\nstrict_help = (\"Enable strict mode. This will cause MkDocs to abort the build \"\n \"on any warnings.\")\ntheme_help = \"The theme to use when building your documentation.\"\ntheme_choices = utils.get_theme_names()\nsite_dir_help = \"The directory to output the result of the documentation build.\"\nreload_help = \"Enable and disable the live reloading in the development server.\"\ncommit_message_help = (\"A commit message to use when commiting to the \"\n \"Github Pages remote branch\")\nremote_branch_help = (\"The remote branch to commit to for Github Pages. This \"\n \"overrides the value specified in config\")\n\n\[email protected](context_settings={'help_option_names': ['-h', '--help']})\[email protected]_option(__version__, '-V', '--version')\n@common_options\ndef cli():\n \"\"\"\n MkDocs - Project documentation with Markdown.\n \"\"\"\n\n\[email protected](name=\"serve\")\[email protected]('-f', '--config-file', type=click.File('rb'), help=config_help)\[email protected]('-a', '--dev-addr', help=dev_addr_help, metavar='<IP:PORT>')\[email protected]('-s', '--strict', is_flag=True, help=strict_help)\[email protected]('-t', '--theme', type=click.Choice(theme_choices), help=theme_help)\[email protected]('--livereload/--no-livereload', default=True, help=reload_help)\n@common_options\ndef serve_command(dev_addr, config_file, strict, theme, livereload):\n \"\"\"Run the builtin development server\"\"\"\n\n logging.getLogger('tornado').setLevel(logging.WARNING)\n\n try:\n serve.serve(\n config_file=config_file,\n dev_addr=dev_addr,\n strict=strict,\n theme=theme,\n livereload=livereload,\n )\n except (exceptions.ConfigurationError, socket.error) as e:\n # Avoid ugly, unhelpful traceback\n raise SystemExit('\\n' + str(e))\n\n\[email protected](name=\"build\")\[email protected]('-c', '--clean', is_flag=True, help=clean_help)\[email protected]('-f', '--config-file', type=click.File('rb'), help=config_help)\[email protected]('-s', '--strict', is_flag=True, help=strict_help)\[email protected]('-t', '--theme', type=click.Choice(theme_choices), help=theme_help)\[email protected]('-d', '--site-dir', type=click.Path(), help=site_dir_help)\n@common_options\ndef build_command(clean, config_file, strict, theme, site_dir):\n \"\"\"Build the MkDocs documentation\"\"\"\n try:\n build.build(load_config(\n config_file=config_file,\n strict=strict,\n theme=theme,\n site_dir=site_dir\n ), clean_site_dir=clean)\n except exceptions.ConfigurationError as e:\n # Avoid ugly, unhelpful traceback\n raise SystemExit('\\n' + str(e))\n\n\[email protected](name=\"json\")\[email protected]('-c', '--clean', is_flag=True, help=clean_help)\[email protected]('-f', '--config-file', type=click.File('rb'), help=config_help)\[email protected]('-s', '--strict', is_flag=True, help=strict_help)\[email protected]('-d', '--site-dir', type=click.Path(), help=site_dir_help)\n@common_options\ndef json_command(clean, config_file, strict, site_dir):\n \"\"\"Build the MkDocs documentation to JSON files\n\n Rather than building your documentation to HTML pages, this\n outputs each page in a simple JSON format. This command is\n useful if you want to index your documentation in an external\n search engine.\n \"\"\"\n\n log.warning(\"The json command is deprecated and will be removed in a \"\n \"future MkDocs release. For details on updating: \"\n \"http://www.mkdocs.org/about/release-notes/\")\n\n try:\n build.build(load_config(\n config_file=config_file,\n strict=strict,\n site_dir=site_dir\n ), dump_json=True, clean_site_dir=clean)\n except exceptions.ConfigurationError as e:\n # Avoid ugly, unhelpful traceback\n raise SystemExit('\\n' + str(e))\n\n\[email protected](name=\"gh-deploy\")\[email protected]('-c', '--clean', is_flag=True, help=clean_help)\[email protected]('-f', '--config-file', type=click.File('rb'), help=config_help)\[email protected]('-m', '--message', help=commit_message_help)\[email protected]('-b', '--remote-branch', help=remote_branch_help)\[email protected]('-r', '--remote-name', help=remote_branch_help)\n@common_options\ndef gh_deploy_command(config_file, clean, message, remote_branch, remote_name):\n \"\"\"Deploy your documentation to GitHub Pages\"\"\"\n try:\n config = load_config(\n config_file=config_file,\n remote_branch=remote_branch,\n remote_name=remote_name\n )\n build.build(config, clean_site_dir=clean)\n gh_deploy.gh_deploy(config, message=message)\n except exceptions.ConfigurationError as e:\n # Avoid ugly, unhelpful traceback\n raise SystemExit('\\n' + str(e))\n\n\[email protected](name=\"new\")\[email protected](\"project_directory\")\n@common_options\ndef new_command(project_directory):\n \"\"\"Create a new MkDocs project\"\"\"\n new.new(project_directory)\n\nif __name__ == '__main__':\n cli()\n", "path": "mkdocs/__main__.py"}]} | 2,661 | 132 |
gh_patches_debug_3664 | rasdani/github-patches | git_diff | deepset-ai__haystack-3795 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
launch_milvus() fails as milvus_dir != '/home/$USER/milvus/'
**Describe the bug**
launch_milvus() fails when `Path.home() ` is not same as `/home/$USER/milvus/`
milvus docker-compose.yml is stored inside Path.home()
```
milvus_dir = Path.home() / "milvus"
......
with open(milvus_dir / "docker-compose.yml", "wb") as f:
f.write(request.content)
```
While docker compose is initiated using
```
status = subprocess.run(["cd /home/$USER/milvus/ && docker-compose up -d"], shell=True)
```
**Error message**
Error that was thrown (if available)
```
/bin/sh: line 0: cd: /home/bhoumis/milvus/: No such file or directory
WARNING - __main__ - Tried to start Milvus through Docker but this failed. It is likely that there is already an existing Milvus instance running.
```
**Expected behavior**
A clear and concise description of what you expected to happen.
```
status = subprocess.run([f"cd {milvus_dir} && docker-compose up -d"], shell=True)
```
**Additional context**
Add any other context about the problem here, like document types / preprocessing steps / settings of reader etc.
**To Reproduce**
Steps to reproduce the behavior
`
from haystack.utils import launch_milvus
launch_milvus()
`
**FAQ Check**
- [x] Have you had a look at [our new FAQ page](https://docs.haystack.deepset.ai/docs/faq)?
**System:**
- OS: macOS Monterey v12.6.1
- GPU/CPU: M1-Pro
- Haystack version (commit or version number): v1.12.2
- DocumentStore: MilvusDocumentStore(
- Reader: NA
- Retriever: NA
</issue>
<code>
[start of haystack/utils/doc_store.py]
1 # pylint: disable=missing-timeout
2
3 import time
4 import logging
5 import subprocess
6 from pathlib import Path
7
8 import requests
9
10
11 logger = logging.getLogger(__name__)
12 ELASTICSEARCH_CONTAINER_NAME = "elasticsearch"
13 OPENSEARCH_CONTAINER_NAME = "opensearch"
14 WEAVIATE_CONTAINER_NAME = "weaviate"
15
16
17 def launch_es(sleep=15, delete_existing=False):
18 """
19 Start an Elasticsearch server via Docker.
20 """
21
22 logger.debug("Starting Elasticsearch ...")
23 if delete_existing:
24 _ = subprocess.run([f"docker rm --force {ELASTICSEARCH_CONTAINER_NAME}"], shell=True, stdout=subprocess.DEVNULL)
25 status = subprocess.run(
26 [
27 f'docker start {ELASTICSEARCH_CONTAINER_NAME} > /dev/null 2>&1 || docker run -d -p 9200:9200 -e "discovery.type=single-node" --name {ELASTICSEARCH_CONTAINER_NAME} elasticsearch:7.9.2'
28 ],
29 shell=True,
30 )
31 if status.returncode:
32 logger.warning(
33 "Tried to start Elasticsearch through Docker but this failed. "
34 "It is likely that there is already an existing Elasticsearch instance running. "
35 )
36 else:
37 time.sleep(sleep)
38
39
40 def launch_opensearch(sleep=15, delete_existing=False, local_port=9200):
41 """
42 Start an OpenSearch server via Docker.
43 """
44 logger.debug("Starting OpenSearch...")
45 # This line is needed since it is not possible to start a new docker container with the name opensearch if there is a stopped image with the same now
46 # docker rm only succeeds if the container is stopped, not if it is running
47 if delete_existing:
48 _ = subprocess.run([f"docker rm --force {OPENSEARCH_CONTAINER_NAME}"], shell=True, stdout=subprocess.DEVNULL)
49 status = subprocess.run(
50 [
51 f'docker start {OPENSEARCH_CONTAINER_NAME} > /dev/null 2>&1 || docker run -d -p {local_port}:9200 -p 9600:9600 -e "discovery.type=single-node" --name {OPENSEARCH_CONTAINER_NAME} opensearchproject/opensearch:1.3.5'
52 ],
53 shell=True,
54 )
55 if status.returncode:
56 logger.warning(
57 "Tried to start OpenSearch through Docker but this failed. "
58 "It is likely that there is already an existing OpenSearch instance running. "
59 )
60 else:
61 time.sleep(sleep)
62
63
64 def launch_weaviate(sleep=15):
65 """
66 Start a Weaviate server via Docker.
67 """
68
69 logger.debug("Starting Weaviate ...")
70 status = subprocess.run(
71 [
72 f"docker start {WEAVIATE_CONTAINER_NAME} > /dev/null 2>&1 || docker run -d -p 8080:8080 --env AUTHENTICATION_ANONYMOUS_ACCESS_ENABLED='true' --env PERSISTENCE_DATA_PATH='/var/lib/weaviate' --name {WEAVIATE_CONTAINER_NAME} semitechnologies/weaviate:latest"
73 ],
74 shell=True,
75 )
76 if status.returncode:
77 logger.warning(
78 "Tried to start Weaviate through Docker but this failed. "
79 "It is likely that there is already an existing Weaviate instance running. "
80 )
81 else:
82 time.sleep(sleep)
83
84
85 def stop_container(container_name, delete_container=False):
86 logger.debug("Stopping %s...", container_name)
87 status = subprocess.run([f"docker stop {container_name}"], shell=True)
88 if status.returncode:
89 logger.warning(
90 f"Tried to stop {container_name} but this failed. "
91 f"It is likely that there was no Docker container with the name {container_name}"
92 )
93 if delete_container:
94 status = subprocess.run([f"docker rm {container_name}"], shell=True)
95
96
97 def stop_opensearch(delete_container=False):
98 stop_container(OPENSEARCH_CONTAINER_NAME, delete_container)
99
100
101 def stop_elasticsearch(delete_container=False):
102 stop_container(ELASTICSEARCH_CONTAINER_NAME, delete_container)
103
104
105 def stop_weaviate(delete_container=False):
106 stop_container(WEAVIATE_CONTAINER_NAME, delete_container)
107
108
109 def stop_service(document_store, delete_container=False):
110 ds_class = str(type(document_store))
111 if "OpenSearchDocumentStore" in ds_class:
112 stop_opensearch(delete_container)
113 elif "ElasticsearchDocumentStore" in ds_class:
114 stop_elasticsearch(delete_container)
115 elif "WeaviateDocumentStore" in ds_class:
116 stop_weaviate(delete_container)
117 else:
118 logger.warning("No support yet for auto stopping the service behind a %s", type(document_store))
119
120
121 def launch_milvus(sleep=15, delete_existing=False):
122 """
123 Start a Milvus server via Docker
124 """
125 logger.debug("Starting Milvus ...")
126
127 milvus_dir = Path.home() / "milvus"
128 milvus_dir.mkdir(exist_ok=True)
129
130 request = requests.get(
131 "https://github.com/milvus-io/milvus/releases/download/v2.0.0/milvus-standalone-docker-compose.yml"
132 )
133 with open(milvus_dir / "docker-compose.yml", "wb") as f:
134 f.write(request.content)
135
136 status = subprocess.run(["cd /home/$USER/milvus/ && docker-compose up -d"], shell=True)
137
138 if status.returncode:
139 logger.warning(
140 "Tried to start Milvus through Docker but this failed. "
141 "It is likely that there is already an existing Milvus instance running. "
142 )
143 else:
144 time.sleep(sleep)
145
[end of haystack/utils/doc_store.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/haystack/utils/doc_store.py b/haystack/utils/doc_store.py
--- a/haystack/utils/doc_store.py
+++ b/haystack/utils/doc_store.py
@@ -133,7 +133,7 @@
with open(milvus_dir / "docker-compose.yml", "wb") as f:
f.write(request.content)
- status = subprocess.run(["cd /home/$USER/milvus/ && docker-compose up -d"], shell=True)
+ status = subprocess.run([f"cd {milvus_dir} && docker-compose up -d"], shell=True)
if status.returncode:
logger.warning(
| {"golden_diff": "diff --git a/haystack/utils/doc_store.py b/haystack/utils/doc_store.py\n--- a/haystack/utils/doc_store.py\n+++ b/haystack/utils/doc_store.py\n@@ -133,7 +133,7 @@\n with open(milvus_dir / \"docker-compose.yml\", \"wb\") as f:\n f.write(request.content)\n \n- status = subprocess.run([\"cd /home/$USER/milvus/ && docker-compose up -d\"], shell=True)\n+ status = subprocess.run([f\"cd {milvus_dir} && docker-compose up -d\"], shell=True)\n \n if status.returncode:\n logger.warning(\n", "issue": "launch_milvus() fails as milvus_dir != '/home/$USER/milvus/'\n**Describe the bug**\r\nlaunch_milvus() fails when `Path.home() ` is not same as `/home/$USER/milvus/`\r\n\r\nmilvus docker-compose.yml is stored inside Path.home()\r\n\r\n```\r\n milvus_dir = Path.home() / \"milvus\"\r\n ......\r\n with open(milvus_dir / \"docker-compose.yml\", \"wb\") as f:\r\n f.write(request.content)\r\n```\r\n\r\nWhile docker compose is initiated using\r\n```\r\nstatus = subprocess.run([\"cd /home/$USER/milvus/ && docker-compose up -d\"], shell=True)\r\n```\r\n\r\n**Error message**\r\nError that was thrown (if available)\r\n```\r\n/bin/sh: line 0: cd: /home/bhoumis/milvus/: No such file or directory\r\nWARNING - __main__ - Tried to start Milvus through Docker but this failed. It is likely that there is already an existing Milvus instance running. \r\n```\r\n**Expected behavior**\r\nA clear and concise description of what you expected to happen.\r\n```\r\nstatus = subprocess.run([f\"cd {milvus_dir} && docker-compose up -d\"], shell=True)\r\n```\r\n**Additional context**\r\nAdd any other context about the problem here, like document types / preprocessing steps / settings of reader etc.\r\n\r\n**To Reproduce**\r\nSteps to reproduce the behavior\r\n`\r\nfrom haystack.utils import launch_milvus\r\nlaunch_milvus()\r\n`\r\n\r\n**FAQ Check**\r\n- [x] Have you had a look at [our new FAQ page](https://docs.haystack.deepset.ai/docs/faq)?\r\n\r\n**System:**\r\n - OS: macOS Monterey v12.6.1\r\n - GPU/CPU: M1-Pro\r\n - Haystack version (commit or version number): v1.12.2\r\n - DocumentStore: MilvusDocumentStore(\r\n - Reader: NA\r\n - Retriever: NA\r\n\n", "before_files": [{"content": "# pylint: disable=missing-timeout\n\nimport time\nimport logging\nimport subprocess\nfrom pathlib import Path\n\nimport requests\n\n\nlogger = logging.getLogger(__name__)\nELASTICSEARCH_CONTAINER_NAME = \"elasticsearch\"\nOPENSEARCH_CONTAINER_NAME = \"opensearch\"\nWEAVIATE_CONTAINER_NAME = \"weaviate\"\n\n\ndef launch_es(sleep=15, delete_existing=False):\n \"\"\"\n Start an Elasticsearch server via Docker.\n \"\"\"\n\n logger.debug(\"Starting Elasticsearch ...\")\n if delete_existing:\n _ = subprocess.run([f\"docker rm --force {ELASTICSEARCH_CONTAINER_NAME}\"], shell=True, stdout=subprocess.DEVNULL)\n status = subprocess.run(\n [\n f'docker start {ELASTICSEARCH_CONTAINER_NAME} > /dev/null 2>&1 || docker run -d -p 9200:9200 -e \"discovery.type=single-node\" --name {ELASTICSEARCH_CONTAINER_NAME} elasticsearch:7.9.2'\n ],\n shell=True,\n )\n if status.returncode:\n logger.warning(\n \"Tried to start Elasticsearch through Docker but this failed. \"\n \"It is likely that there is already an existing Elasticsearch instance running. \"\n )\n else:\n time.sleep(sleep)\n\n\ndef launch_opensearch(sleep=15, delete_existing=False, local_port=9200):\n \"\"\"\n Start an OpenSearch server via Docker.\n \"\"\"\n logger.debug(\"Starting OpenSearch...\")\n # This line is needed since it is not possible to start a new docker container with the name opensearch if there is a stopped image with the same now\n # docker rm only succeeds if the container is stopped, not if it is running\n if delete_existing:\n _ = subprocess.run([f\"docker rm --force {OPENSEARCH_CONTAINER_NAME}\"], shell=True, stdout=subprocess.DEVNULL)\n status = subprocess.run(\n [\n f'docker start {OPENSEARCH_CONTAINER_NAME} > /dev/null 2>&1 || docker run -d -p {local_port}:9200 -p 9600:9600 -e \"discovery.type=single-node\" --name {OPENSEARCH_CONTAINER_NAME} opensearchproject/opensearch:1.3.5'\n ],\n shell=True,\n )\n if status.returncode:\n logger.warning(\n \"Tried to start OpenSearch through Docker but this failed. \"\n \"It is likely that there is already an existing OpenSearch instance running. \"\n )\n else:\n time.sleep(sleep)\n\n\ndef launch_weaviate(sleep=15):\n \"\"\"\n Start a Weaviate server via Docker.\n \"\"\"\n\n logger.debug(\"Starting Weaviate ...\")\n status = subprocess.run(\n [\n f\"docker start {WEAVIATE_CONTAINER_NAME} > /dev/null 2>&1 || docker run -d -p 8080:8080 --env AUTHENTICATION_ANONYMOUS_ACCESS_ENABLED='true' --env PERSISTENCE_DATA_PATH='/var/lib/weaviate' --name {WEAVIATE_CONTAINER_NAME} semitechnologies/weaviate:latest\"\n ],\n shell=True,\n )\n if status.returncode:\n logger.warning(\n \"Tried to start Weaviate through Docker but this failed. \"\n \"It is likely that there is already an existing Weaviate instance running. \"\n )\n else:\n time.sleep(sleep)\n\n\ndef stop_container(container_name, delete_container=False):\n logger.debug(\"Stopping %s...\", container_name)\n status = subprocess.run([f\"docker stop {container_name}\"], shell=True)\n if status.returncode:\n logger.warning(\n f\"Tried to stop {container_name} but this failed. \"\n f\"It is likely that there was no Docker container with the name {container_name}\"\n )\n if delete_container:\n status = subprocess.run([f\"docker rm {container_name}\"], shell=True)\n\n\ndef stop_opensearch(delete_container=False):\n stop_container(OPENSEARCH_CONTAINER_NAME, delete_container)\n\n\ndef stop_elasticsearch(delete_container=False):\n stop_container(ELASTICSEARCH_CONTAINER_NAME, delete_container)\n\n\ndef stop_weaviate(delete_container=False):\n stop_container(WEAVIATE_CONTAINER_NAME, delete_container)\n\n\ndef stop_service(document_store, delete_container=False):\n ds_class = str(type(document_store))\n if \"OpenSearchDocumentStore\" in ds_class:\n stop_opensearch(delete_container)\n elif \"ElasticsearchDocumentStore\" in ds_class:\n stop_elasticsearch(delete_container)\n elif \"WeaviateDocumentStore\" in ds_class:\n stop_weaviate(delete_container)\n else:\n logger.warning(\"No support yet for auto stopping the service behind a %s\", type(document_store))\n\n\ndef launch_milvus(sleep=15, delete_existing=False):\n \"\"\"\n Start a Milvus server via Docker\n \"\"\"\n logger.debug(\"Starting Milvus ...\")\n\n milvus_dir = Path.home() / \"milvus\"\n milvus_dir.mkdir(exist_ok=True)\n\n request = requests.get(\n \"https://github.com/milvus-io/milvus/releases/download/v2.0.0/milvus-standalone-docker-compose.yml\"\n )\n with open(milvus_dir / \"docker-compose.yml\", \"wb\") as f:\n f.write(request.content)\n\n status = subprocess.run([\"cd /home/$USER/milvus/ && docker-compose up -d\"], shell=True)\n\n if status.returncode:\n logger.warning(\n \"Tried to start Milvus through Docker but this failed. \"\n \"It is likely that there is already an existing Milvus instance running. \"\n )\n else:\n time.sleep(sleep)\n", "path": "haystack/utils/doc_store.py"}]} | 2,549 | 145 |
gh_patches_debug_37060 | rasdani/github-patches | git_diff | chainer__chainer-2716 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
ignore_label in Softmax.forward_gpu does not work when it is not -1
`F.SoftMaxCrossEntropy` can specify `ignore_label` in its `__init__` method. But -1 is hard-coded in its `forward_gpu` and `backward_gpu` methods ([here](https://github.com/pfnet/chainer/blob/master/chainer/functions/loss/softmax_cross_entropy.py#L113) and [here](https://github.com/pfnet/chainer/blob/master/chainer/functions/loss/softmax_cross_entropy.py#L195)). Therefore it does not calculate loss value if `ignore_label` is other than `-1`.
This bug is reported by @musyoku. Thank you!
</issue>
<code>
[start of chainer/functions/loss/softmax_cross_entropy.py]
1 import numpy
2 import six
3
4 import chainer
5 from chainer import cuda
6 from chainer import function
7 from chainer.functions.activation import log_softmax
8 from chainer.utils import type_check
9
10
11 class SoftmaxCrossEntropy(function.Function):
12
13 """Softmax activation followed by a cross entropy loss."""
14
15 normalize = True
16
17 def __init__(self, use_cudnn=True, normalize=True, cache_score=True,
18 class_weight=None, ignore_label=-1, reduce='mean'):
19 self.use_cudnn = use_cudnn
20 self.normalize = normalize
21 self.cache_score = cache_score
22 self.class_weight = class_weight
23 if class_weight is not None:
24 if self.class_weight.ndim != 1:
25 raise ValueError('class_weight.ndim should be 1')
26 if self.class_weight.dtype.kind != 'f':
27 raise ValueError('The dtype of class_weight should be \'f\'')
28 if isinstance(self.class_weight, chainer.Variable):
29 raise ValueError('class_weight should be a numpy.ndarray or '
30 'cupy.ndarray, not a chainer.Variable')
31 self.ignore_label = ignore_label
32 if reduce not in ('mean', 'no'):
33 raise ValueError(
34 "only 'mean' and 'no' are valid for 'reduce', but '%s' is "
35 'given' % reduce)
36 self.reduce = reduce
37
38 def check_type_forward(self, in_types):
39 type_check.expect(in_types.size() == 2)
40 x_type, t_type = in_types
41
42 type_check.expect(
43 x_type.dtype.kind == 'f',
44 t_type.dtype == numpy.int32,
45 t_type.ndim == x_type.ndim - 1,
46
47 x_type.shape[0] == t_type.shape[0],
48 x_type.shape[2:] == t_type.shape[1:],
49 )
50
51 def _check_input_values(self, x, t):
52 if not (((0 <= t) &
53 (t < x.shape[1])) |
54 (t == self.ignore_label)).all():
55 msg = ('Each label `t` need to satisfy '
56 '`0 <= t < x.shape[1] or t == %d`' % self.ignore_label)
57 raise ValueError(msg)
58
59 def forward_cpu(self, inputs):
60 x, t = inputs
61 if chainer.is_debug():
62 self._check_input_values(x, t)
63
64 log_y = log_softmax._log_softmax(x, self.use_cudnn)
65 if self.cache_score:
66 self.y = numpy.exp(log_y)
67 if self.class_weight is not None:
68 shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]
69 log_y *= numpy.broadcast_to(
70 self.class_weight.reshape(shape), x.shape)
71 log_yd = numpy.rollaxis(log_y, 1)
72 log_yd = log_yd.reshape(len(log_yd), -1)
73 log_p = log_yd[numpy.maximum(t.ravel(), 0), numpy.arange(t.size)]
74
75 log_p *= (t.ravel() != self.ignore_label)
76 if self.reduce == 'mean':
77 # deal with the case where the SoftmaxCrossEntropy is
78 # unpickled from the old version
79 if self.normalize:
80 count = (t != self.ignore_label).sum()
81 else:
82 count = len(x)
83 self._coeff = 1.0 / max(count, 1)
84
85 y = log_p.sum(keepdims=True) * (-self._coeff)
86 return y.reshape(()),
87 else:
88 return -log_p.reshape(t.shape),
89
90 def forward_gpu(self, inputs):
91 cupy = cuda.cupy
92 x, t = inputs
93 if chainer.is_debug():
94 self._check_input_values(x, t)
95
96 log_y = log_softmax._log_softmax(x, self.use_cudnn)
97 if self.cache_score:
98 self.y = cupy.exp(log_y)
99 if self.class_weight is not None:
100 shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]
101 log_y *= cupy.broadcast_to(
102 self.class_weight.reshape(shape), x.shape)
103 if self.normalize:
104 coeff = cupy.maximum(1, (t != self.ignore_label).sum())
105 else:
106 coeff = max(1, len(t))
107 self._coeff = cupy.divide(1.0, coeff, dtype=x.dtype)
108
109 log_y = cupy.rollaxis(log_y, 1, log_y.ndim)
110 if self.reduce == 'mean':
111 ret = cuda.reduce(
112 'S t, raw T log_y, int32 n_channel, raw T coeff', 'T out',
113 't == -1 ? T(0) : log_y[_j * n_channel + t]',
114 'a + b', 'out = a * -coeff[0]', '0', 'crossent_fwd'
115 )(t, log_y.reduced_view(), log_y.shape[-1], self._coeff)
116 else:
117 ret = cuda.elementwise(
118 'S t, raw T log_y, int32 n_channel, T ignore', 'T out',
119 '''
120 if (t == ignore) {
121 out = 0;
122 } else {
123 out = -log_y[i * n_channel + t];
124 }
125 ''',
126 'softmax_crossent_no_reduce_fwd'
127 )(t, log_y.reduced_view(), log_y.shape[-1], self.ignore_label)
128 ret = ret.reshape(t.shape)
129 return ret,
130
131 def backward_cpu(self, inputs, grad_outputs):
132 x, t = inputs
133 gloss = grad_outputs[0]
134 if hasattr(self, 'y'):
135 y = self.y.copy()
136 else:
137 y = log_softmax._log_softmax(x, self.use_cudnn)
138 numpy.exp(y, out=y)
139 if y.ndim == 2:
140 gx = y
141 gx[numpy.arange(len(t)), numpy.maximum(t, 0)] -= 1
142 if self.class_weight is not None:
143 shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]
144 c = numpy.broadcast_to(
145 self.class_weight.reshape(shape), x.shape)
146 c = c[numpy.arange(len(t)), numpy.maximum(t, 0)]
147 gx *= numpy.broadcast_to(numpy.expand_dims(c, 1), gx.shape)
148 gx *= (t != self.ignore_label).reshape((len(t), 1))
149 else:
150 # in the case where y.ndim is higher than 2,
151 # we think that a current implementation is inefficient
152 # because it yields two provisional arrays for indexing.
153 n_unit = t.size // len(t)
154 gx = y.reshape(y.shape[0], y.shape[1], -1)
155 fst_index = numpy.arange(t.size) // n_unit
156 trd_index = numpy.arange(t.size) % n_unit
157 gx[fst_index, numpy.maximum(t.ravel(), 0), trd_index] -= 1
158 if self.class_weight is not None:
159 shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]
160 c = numpy.broadcast_to(
161 self.class_weight.reshape(shape), x.shape)
162 c = c.reshape(gx.shape)
163 c = c[fst_index, numpy.maximum(t.ravel(), 0), trd_index]
164 c = c.reshape(y.shape[0], 1, -1)
165 gx *= numpy.broadcast_to(c, gx.shape)
166 gx *= (t != self.ignore_label).reshape((len(t), 1, -1))
167 gx = gx.reshape(y.shape)
168 if self.reduce == 'mean':
169 gx *= gloss * self._coeff
170 else:
171 gx *= gloss[:, None]
172 return gx, None
173
174 def backward_gpu(self, inputs, grad_outputs):
175 cupy = cuda.cupy
176 x, t = inputs
177 if hasattr(self, 'y'):
178 y = self.y
179 else:
180 y = log_softmax._log_softmax(x, self.use_cudnn)
181 cupy.exp(y, out=y)
182 gloss = grad_outputs[0]
183 n_unit = t.size // len(t)
184 if self.reduce == 'mean':
185 coeff = gloss * self._coeff
186 else:
187 coeff = gloss[:, None, ...]
188
189 if self.class_weight is None:
190 gx = cuda.elementwise(
191 'T y, S t, T coeff, S n_channel, S n_unit',
192 'T gx',
193 '''
194 const int c = (i / n_unit % n_channel);
195 gx = t == -1 ? 0 : coeff * (y - (c == t));
196 ''',
197 'softmax_crossent_bwd')(
198 y, cupy.expand_dims(t, 1), coeff, x.shape[1], n_unit)
199 else:
200 gx = cuda.elementwise(
201 'T y, raw T w, S t, T coeff, S n_channel, S n_unit',
202 'T gx',
203 '''
204 const int c = (i / n_unit % n_channel);
205 gx = t == -1 ? 0 : coeff * (y - (c == t)) * w[t];
206 ''',
207 'softmax_crossent_weight_bwd')(
208 y, self.class_weight, cupy.expand_dims(t, 1), coeff,
209 x.shape[1], n_unit)
210
211 return gx, None
212
213
214 def softmax_cross_entropy(
215 x, t, use_cudnn=True, normalize=True, cache_score=True,
216 class_weight=None, ignore_label=-1, reduce='mean'):
217 """Computes cross entropy loss for pre-softmax activations.
218
219 Args:
220 x (~chainer.Variable): Variable holding a multidimensional array whose
221 element indicates unnormalized log probability: the first axis of
222 the variable represents the number of samples, and the second axis
223 represents the number of classes. While this function computes
224 a usual softmax cross entropy if the number of dimensions is equal
225 to 2, it computes a cross entropy of the replicated softmax if the
226 number of dimensions is greater than 2.
227 t (~chainer.Variable): Variable holding an int32 vector of ground truth
228 labels. If ``t[i] == ignore_label``, corresponding ``x[i]`` is
229 ignored.
230 normalize (bool): If ``True``, this function normalizes the cross
231 entropy loss across all instances. If ``False``, it only
232 normalizes along a batch size.
233 cache_score (bool): When it is ``True``, the function stores result
234 of forward computation to use it on backward computation. It
235 reduces computational cost though consumes more memory.
236 class_weight (~numpy.ndarray or ~chainer.cuda.cupy.ndarray): An array
237 that contains constant weights that will be multiplied with the
238 loss values along with the second dimension. The shape of this
239 array should be ``(x.shape[1],)``. If this is not ``None``, each
240 class weight ``class_weight[i]`` is actually multiplied to
241 ``y[:, i]`` that is the corresponding log-softmax output of ``x``
242 and has the same shape as ``x`` before calculating the actual loss
243 value.
244 ignore_label (int): Label value you want to ignore. Its default value
245 is ``-1``. See description of the argument `t`.
246 reduce (str): A string that determines whether to reduce the loss
247 values. If it is ``'mean'``, it computes the sum of the individual
248 cross entropy and normalize it according to ``normalize`` option.
249 If it is ``'no'``, this function computes cross entropy for each
250 instance and does not normalize it (``normalize`` option is
251 ignored). In this case, the loss value of the ignored instance,
252 which has ``ignore_label`` as its target value, is set to ``0``.
253
254 Returns:
255 Variable: A variable holding a scalar array of the cross entropy loss.
256 If ``reduce`` is ``'mean'``, it is a scalar array.
257 If ``reduce`` is ``'no'``, the shape is same as that of ``x``.
258
259 .. note::
260
261 This function is differentiable only by ``x``.
262
263 """
264
265 return SoftmaxCrossEntropy(
266 use_cudnn, normalize, cache_score, class_weight, ignore_label, reduce)(
267 x, t)
268
[end of chainer/functions/loss/softmax_cross_entropy.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/chainer/functions/loss/softmax_cross_entropy.py b/chainer/functions/loss/softmax_cross_entropy.py
--- a/chainer/functions/loss/softmax_cross_entropy.py
+++ b/chainer/functions/loss/softmax_cross_entropy.py
@@ -109,10 +109,13 @@
log_y = cupy.rollaxis(log_y, 1, log_y.ndim)
if self.reduce == 'mean':
ret = cuda.reduce(
- 'S t, raw T log_y, int32 n_channel, raw T coeff', 'T out',
- 't == -1 ? T(0) : log_y[_j * n_channel + t]',
+ 'S t, raw T log_y, int32 n_channel, raw T coeff, '
+ 'S ignore_label',
+ 'T out',
+ 't == ignore_label ? T(0) : log_y[_j * n_channel + t]',
'a + b', 'out = a * -coeff[0]', '0', 'crossent_fwd'
- )(t, log_y.reduced_view(), log_y.shape[-1], self._coeff)
+ )(t, log_y.reduced_view(), log_y.shape[-1],
+ self._coeff, self.ignore_label)
else:
ret = cuda.elementwise(
'S t, raw T log_y, int32 n_channel, T ignore', 'T out',
@@ -188,25 +191,27 @@
if self.class_weight is None:
gx = cuda.elementwise(
- 'T y, S t, T coeff, S n_channel, S n_unit',
+ 'T y, S t, T coeff, S n_channel, S n_unit, S ignore_label',
'T gx',
'''
const int c = (i / n_unit % n_channel);
- gx = t == -1 ? 0 : coeff * (y - (c == t));
+ gx = t == ignore_label ? 0 : coeff * (y - (c == t));
''',
'softmax_crossent_bwd')(
- y, cupy.expand_dims(t, 1), coeff, x.shape[1], n_unit)
+ y, cupy.expand_dims(t, 1), coeff, x.shape[1],
+ n_unit, self.ignore_label)
else:
gx = cuda.elementwise(
- 'T y, raw T w, S t, T coeff, S n_channel, S n_unit',
+ 'T y, raw T w, S t, T coeff, S n_channel, S n_unit, '
+ 'S ignore_label',
'T gx',
'''
const int c = (i / n_unit % n_channel);
- gx = t == -1 ? 0 : coeff * (y - (c == t)) * w[t];
+ gx = t == ignore_label ? 0 : coeff * (y - (c == t)) * w[t];
''',
'softmax_crossent_weight_bwd')(
y, self.class_weight, cupy.expand_dims(t, 1), coeff,
- x.shape[1], n_unit)
+ x.shape[1], n_unit, self.ignore_label)
return gx, None
| {"golden_diff": "diff --git a/chainer/functions/loss/softmax_cross_entropy.py b/chainer/functions/loss/softmax_cross_entropy.py\n--- a/chainer/functions/loss/softmax_cross_entropy.py\n+++ b/chainer/functions/loss/softmax_cross_entropy.py\n@@ -109,10 +109,13 @@\n log_y = cupy.rollaxis(log_y, 1, log_y.ndim)\n if self.reduce == 'mean':\n ret = cuda.reduce(\n- 'S t, raw T log_y, int32 n_channel, raw T coeff', 'T out',\n- 't == -1 ? T(0) : log_y[_j * n_channel + t]',\n+ 'S t, raw T log_y, int32 n_channel, raw T coeff, '\n+ 'S ignore_label',\n+ 'T out',\n+ 't == ignore_label ? T(0) : log_y[_j * n_channel + t]',\n 'a + b', 'out = a * -coeff[0]', '0', 'crossent_fwd'\n- )(t, log_y.reduced_view(), log_y.shape[-1], self._coeff)\n+ )(t, log_y.reduced_view(), log_y.shape[-1],\n+ self._coeff, self.ignore_label)\n else:\n ret = cuda.elementwise(\n 'S t, raw T log_y, int32 n_channel, T ignore', 'T out',\n@@ -188,25 +191,27 @@\n \n if self.class_weight is None:\n gx = cuda.elementwise(\n- 'T y, S t, T coeff, S n_channel, S n_unit',\n+ 'T y, S t, T coeff, S n_channel, S n_unit, S ignore_label',\n 'T gx',\n '''\n const int c = (i / n_unit % n_channel);\n- gx = t == -1 ? 0 : coeff * (y - (c == t));\n+ gx = t == ignore_label ? 0 : coeff * (y - (c == t));\n ''',\n 'softmax_crossent_bwd')(\n- y, cupy.expand_dims(t, 1), coeff, x.shape[1], n_unit)\n+ y, cupy.expand_dims(t, 1), coeff, x.shape[1],\n+ n_unit, self.ignore_label)\n else:\n gx = cuda.elementwise(\n- 'T y, raw T w, S t, T coeff, S n_channel, S n_unit',\n+ 'T y, raw T w, S t, T coeff, S n_channel, S n_unit, '\n+ 'S ignore_label',\n 'T gx',\n '''\n const int c = (i / n_unit % n_channel);\n- gx = t == -1 ? 0 : coeff * (y - (c == t)) * w[t];\n+ gx = t == ignore_label ? 0 : coeff * (y - (c == t)) * w[t];\n ''',\n 'softmax_crossent_weight_bwd')(\n y, self.class_weight, cupy.expand_dims(t, 1), coeff,\n- x.shape[1], n_unit)\n+ x.shape[1], n_unit, self.ignore_label)\n \n return gx, None\n", "issue": "ignore_label in Softmax.forward_gpu does not work when it is not -1\n`F.SoftMaxCrossEntropy` can specify `ignore_label` in its `__init__` method. But -1 is hard-coded in its `forward_gpu` and `backward_gpu` methods ([here](https://github.com/pfnet/chainer/blob/master/chainer/functions/loss/softmax_cross_entropy.py#L113) and [here](https://github.com/pfnet/chainer/blob/master/chainer/functions/loss/softmax_cross_entropy.py#L195)). Therefore it does not calculate loss value if `ignore_label` is other than `-1`.\r\n\r\nThis bug is reported by @musyoku. Thank you!\n", "before_files": [{"content": "import numpy\nimport six\n\nimport chainer\nfrom chainer import cuda\nfrom chainer import function\nfrom chainer.functions.activation import log_softmax\nfrom chainer.utils import type_check\n\n\nclass SoftmaxCrossEntropy(function.Function):\n\n \"\"\"Softmax activation followed by a cross entropy loss.\"\"\"\n\n normalize = True\n\n def __init__(self, use_cudnn=True, normalize=True, cache_score=True,\n class_weight=None, ignore_label=-1, reduce='mean'):\n self.use_cudnn = use_cudnn\n self.normalize = normalize\n self.cache_score = cache_score\n self.class_weight = class_weight\n if class_weight is not None:\n if self.class_weight.ndim != 1:\n raise ValueError('class_weight.ndim should be 1')\n if self.class_weight.dtype.kind != 'f':\n raise ValueError('The dtype of class_weight should be \\'f\\'')\n if isinstance(self.class_weight, chainer.Variable):\n raise ValueError('class_weight should be a numpy.ndarray or '\n 'cupy.ndarray, not a chainer.Variable')\n self.ignore_label = ignore_label\n if reduce not in ('mean', 'no'):\n raise ValueError(\n \"only 'mean' and 'no' are valid for 'reduce', but '%s' is \"\n 'given' % reduce)\n self.reduce = reduce\n\n def check_type_forward(self, in_types):\n type_check.expect(in_types.size() == 2)\n x_type, t_type = in_types\n\n type_check.expect(\n x_type.dtype.kind == 'f',\n t_type.dtype == numpy.int32,\n t_type.ndim == x_type.ndim - 1,\n\n x_type.shape[0] == t_type.shape[0],\n x_type.shape[2:] == t_type.shape[1:],\n )\n\n def _check_input_values(self, x, t):\n if not (((0 <= t) &\n (t < x.shape[1])) |\n (t == self.ignore_label)).all():\n msg = ('Each label `t` need to satisfy '\n '`0 <= t < x.shape[1] or t == %d`' % self.ignore_label)\n raise ValueError(msg)\n\n def forward_cpu(self, inputs):\n x, t = inputs\n if chainer.is_debug():\n self._check_input_values(x, t)\n\n log_y = log_softmax._log_softmax(x, self.use_cudnn)\n if self.cache_score:\n self.y = numpy.exp(log_y)\n if self.class_weight is not None:\n shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]\n log_y *= numpy.broadcast_to(\n self.class_weight.reshape(shape), x.shape)\n log_yd = numpy.rollaxis(log_y, 1)\n log_yd = log_yd.reshape(len(log_yd), -1)\n log_p = log_yd[numpy.maximum(t.ravel(), 0), numpy.arange(t.size)]\n\n log_p *= (t.ravel() != self.ignore_label)\n if self.reduce == 'mean':\n # deal with the case where the SoftmaxCrossEntropy is\n # unpickled from the old version\n if self.normalize:\n count = (t != self.ignore_label).sum()\n else:\n count = len(x)\n self._coeff = 1.0 / max(count, 1)\n\n y = log_p.sum(keepdims=True) * (-self._coeff)\n return y.reshape(()),\n else:\n return -log_p.reshape(t.shape),\n\n def forward_gpu(self, inputs):\n cupy = cuda.cupy\n x, t = inputs\n if chainer.is_debug():\n self._check_input_values(x, t)\n\n log_y = log_softmax._log_softmax(x, self.use_cudnn)\n if self.cache_score:\n self.y = cupy.exp(log_y)\n if self.class_weight is not None:\n shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]\n log_y *= cupy.broadcast_to(\n self.class_weight.reshape(shape), x.shape)\n if self.normalize:\n coeff = cupy.maximum(1, (t != self.ignore_label).sum())\n else:\n coeff = max(1, len(t))\n self._coeff = cupy.divide(1.0, coeff, dtype=x.dtype)\n\n log_y = cupy.rollaxis(log_y, 1, log_y.ndim)\n if self.reduce == 'mean':\n ret = cuda.reduce(\n 'S t, raw T log_y, int32 n_channel, raw T coeff', 'T out',\n 't == -1 ? T(0) : log_y[_j * n_channel + t]',\n 'a + b', 'out = a * -coeff[0]', '0', 'crossent_fwd'\n )(t, log_y.reduced_view(), log_y.shape[-1], self._coeff)\n else:\n ret = cuda.elementwise(\n 'S t, raw T log_y, int32 n_channel, T ignore', 'T out',\n '''\n if (t == ignore) {\n out = 0;\n } else {\n out = -log_y[i * n_channel + t];\n }\n ''',\n 'softmax_crossent_no_reduce_fwd'\n )(t, log_y.reduced_view(), log_y.shape[-1], self.ignore_label)\n ret = ret.reshape(t.shape)\n return ret,\n\n def backward_cpu(self, inputs, grad_outputs):\n x, t = inputs\n gloss = grad_outputs[0]\n if hasattr(self, 'y'):\n y = self.y.copy()\n else:\n y = log_softmax._log_softmax(x, self.use_cudnn)\n numpy.exp(y, out=y)\n if y.ndim == 2:\n gx = y\n gx[numpy.arange(len(t)), numpy.maximum(t, 0)] -= 1\n if self.class_weight is not None:\n shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]\n c = numpy.broadcast_to(\n self.class_weight.reshape(shape), x.shape)\n c = c[numpy.arange(len(t)), numpy.maximum(t, 0)]\n gx *= numpy.broadcast_to(numpy.expand_dims(c, 1), gx.shape)\n gx *= (t != self.ignore_label).reshape((len(t), 1))\n else:\n # in the case where y.ndim is higher than 2,\n # we think that a current implementation is inefficient\n # because it yields two provisional arrays for indexing.\n n_unit = t.size // len(t)\n gx = y.reshape(y.shape[0], y.shape[1], -1)\n fst_index = numpy.arange(t.size) // n_unit\n trd_index = numpy.arange(t.size) % n_unit\n gx[fst_index, numpy.maximum(t.ravel(), 0), trd_index] -= 1\n if self.class_weight is not None:\n shape = [1 if d != 1 else -1 for d in six.moves.range(x.ndim)]\n c = numpy.broadcast_to(\n self.class_weight.reshape(shape), x.shape)\n c = c.reshape(gx.shape)\n c = c[fst_index, numpy.maximum(t.ravel(), 0), trd_index]\n c = c.reshape(y.shape[0], 1, -1)\n gx *= numpy.broadcast_to(c, gx.shape)\n gx *= (t != self.ignore_label).reshape((len(t), 1, -1))\n gx = gx.reshape(y.shape)\n if self.reduce == 'mean':\n gx *= gloss * self._coeff\n else:\n gx *= gloss[:, None]\n return gx, None\n\n def backward_gpu(self, inputs, grad_outputs):\n cupy = cuda.cupy\n x, t = inputs\n if hasattr(self, 'y'):\n y = self.y\n else:\n y = log_softmax._log_softmax(x, self.use_cudnn)\n cupy.exp(y, out=y)\n gloss = grad_outputs[0]\n n_unit = t.size // len(t)\n if self.reduce == 'mean':\n coeff = gloss * self._coeff\n else:\n coeff = gloss[:, None, ...]\n\n if self.class_weight is None:\n gx = cuda.elementwise(\n 'T y, S t, T coeff, S n_channel, S n_unit',\n 'T gx',\n '''\n const int c = (i / n_unit % n_channel);\n gx = t == -1 ? 0 : coeff * (y - (c == t));\n ''',\n 'softmax_crossent_bwd')(\n y, cupy.expand_dims(t, 1), coeff, x.shape[1], n_unit)\n else:\n gx = cuda.elementwise(\n 'T y, raw T w, S t, T coeff, S n_channel, S n_unit',\n 'T gx',\n '''\n const int c = (i / n_unit % n_channel);\n gx = t == -1 ? 0 : coeff * (y - (c == t)) * w[t];\n ''',\n 'softmax_crossent_weight_bwd')(\n y, self.class_weight, cupy.expand_dims(t, 1), coeff,\n x.shape[1], n_unit)\n\n return gx, None\n\n\ndef softmax_cross_entropy(\n x, t, use_cudnn=True, normalize=True, cache_score=True,\n class_weight=None, ignore_label=-1, reduce='mean'):\n \"\"\"Computes cross entropy loss for pre-softmax activations.\n\n Args:\n x (~chainer.Variable): Variable holding a multidimensional array whose\n element indicates unnormalized log probability: the first axis of\n the variable represents the number of samples, and the second axis\n represents the number of classes. While this function computes\n a usual softmax cross entropy if the number of dimensions is equal\n to 2, it computes a cross entropy of the replicated softmax if the\n number of dimensions is greater than 2.\n t (~chainer.Variable): Variable holding an int32 vector of ground truth\n labels. If ``t[i] == ignore_label``, corresponding ``x[i]`` is\n ignored.\n normalize (bool): If ``True``, this function normalizes the cross\n entropy loss across all instances. If ``False``, it only\n normalizes along a batch size.\n cache_score (bool): When it is ``True``, the function stores result\n of forward computation to use it on backward computation. It\n reduces computational cost though consumes more memory.\n class_weight (~numpy.ndarray or ~chainer.cuda.cupy.ndarray): An array\n that contains constant weights that will be multiplied with the\n loss values along with the second dimension. The shape of this\n array should be ``(x.shape[1],)``. If this is not ``None``, each\n class weight ``class_weight[i]`` is actually multiplied to\n ``y[:, i]`` that is the corresponding log-softmax output of ``x``\n and has the same shape as ``x`` before calculating the actual loss\n value.\n ignore_label (int): Label value you want to ignore. Its default value\n is ``-1``. See description of the argument `t`.\n reduce (str): A string that determines whether to reduce the loss\n values. If it is ``'mean'``, it computes the sum of the individual\n cross entropy and normalize it according to ``normalize`` option.\n If it is ``'no'``, this function computes cross entropy for each\n instance and does not normalize it (``normalize`` option is\n ignored). In this case, the loss value of the ignored instance,\n which has ``ignore_label`` as its target value, is set to ``0``.\n\n Returns:\n Variable: A variable holding a scalar array of the cross entropy loss.\n If ``reduce`` is ``'mean'``, it is a scalar array.\n If ``reduce`` is ``'no'``, the shape is same as that of ``x``.\n\n .. note::\n\n This function is differentiable only by ``x``.\n\n \"\"\"\n\n return SoftmaxCrossEntropy(\n use_cudnn, normalize, cache_score, class_weight, ignore_label, reduce)(\n x, t)\n", "path": "chainer/functions/loss/softmax_cross_entropy.py"}]} | 4,049 | 717 |
gh_patches_debug_13222 | rasdani/github-patches | git_diff | SigmaHQ__sigma-4029 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Unknown field modifier in master rules
sigmac fails to parse both `rules/windows/builtin/security/win_security_successful_external_remote_smb_login.yml` and `rules/windows/builtin/security/win_security_successful_external_remote_rdp_login.yml` due to an unknown field modifier, `IpAddress|cidr`. The unit tests also failed https://github.com/SigmaHQ/sigma/actions/runs/4052855667/jobs/6972774488#step:6:66.
</issue>
<code>
[start of tools/sigma/parser/rule.py]
1 # Sigma parser
2 # Copyright 2016-2019 Thomas Patzke, Florian Roth
3
4 # This program is free software: you can redistribute it and/or modify
5 # it under the terms of the GNU Lesser General Public License as published by
6 # the Free Software Foundation, either version 3 of the License, or
7 # (at your option) any later version.
8
9 # This program is distributed in the hope that it will be useful,
10 # but WITHOUT ANY WARRANTY; without even the implied warranty of
11 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 # GNU Lesser General Public License for more details.
13
14 # You should have received a copy of the GNU Lesser General Public License
15 # along with this program. If not, see <http://www.gnu.org/licenses/>.
16
17 import re
18 from .exceptions import SigmaParseError
19 from .condition import SigmaConditionTokenizer, SigmaConditionParser, ConditionAND, ConditionOR, ConditionNULLValue, SigmaSearchValueAsIs
20 from .modifiers import apply_modifiers
21
22 class SigmaParser:
23 """Parse a Sigma rule (definitions, conditions and aggregations)"""
24 def __init__(self, sigma, config):
25 self.definitions = dict()
26 self.values = dict()
27 self.config = config
28 self.parsedyaml = sigma
29 self.parse_sigma()
30
31 def parse_sigma(self):
32 try: # definition uniqueness check
33 for definitionName, definition in self.parsedyaml["detection"].items():
34 if definitionName != "condition":
35 self.definitions[definitionName] = definition
36 self.extract_values(definition) # builds key-values-table in self.values
37 except KeyError:
38 raise SigmaParseError("No detection definitions found")
39
40 try: # tokenization
41 conditions = self.parsedyaml["detection"]["condition"]
42 self.condtoken = list() # list of tokenized conditions
43 if type(conditions) == str:
44 self.condtoken.append(SigmaConditionTokenizer(conditions))
45 elif type(conditions) == list:
46 for condition in conditions:
47 self.condtoken.append(SigmaConditionTokenizer(condition))
48 except KeyError:
49 raise SigmaParseError("No condition found")
50
51 self.condparsed = list() # list of parsed conditions
52 for tokens in self.condtoken:
53 condparsed = SigmaConditionParser(self, tokens)
54 self.condparsed.append(condparsed)
55
56 def parse_definition_byname(self, definitionName, condOverride=None):
57 try:
58 definition = self.definitions[definitionName]
59 except KeyError as e:
60 raise SigmaParseError("Unknown definition '%s'" % definitionName) from e
61 return self.parse_definition(definition, condOverride)
62
63 def parse_definition(self, definition, condOverride=None):
64 if type(definition) not in (dict, list):
65 raise SigmaParseError("Expected map or list, got type %s: '%s'" % (type(definition), str(definition)))
66
67 if type(definition) == list: # list of values or maps
68 if condOverride: # condition given through rule detection condition, e.g. 1 of x
69 cond = condOverride()
70 else: # no condition given, use default from spec
71 cond = ConditionOR()
72
73 subcond = None
74 for value in definition:
75 if type(value) in (str, int):
76 cond.add(value)
77 elif type(value) in (dict, list):
78 cond.add(self.parse_definition(value))
79 else:
80 raise SigmaParseError("Definition list may only contain plain values or maps")
81 elif type(definition) == dict: # map
82 cond = ConditionAND()
83 for key, value in definition.items():
84 if "|" in key: # field name contains value modifier
85 fieldname, *modifiers = key.split("|")
86 value = apply_modifiers(value, modifiers)
87 else:
88 fieldname = key
89 mapping = self.config.get_fieldmapping(fieldname)
90 if isinstance(value, (ConditionAND, ConditionOR)): # value is condition node (by transformation modifier)
91 value.items = [ mapping.resolve(key, item, self) for item in value.items ]
92 cond.add(value)
93 else: # plain value or something unexpected (caught by backends)
94 mapped = mapping.resolve(key, value, self)
95 cond.add(mapped)
96
97 return cond
98
99 def extract_values(self, definition):
100 """Extract all values from map key:value pairs info self.values"""
101 if type(definition) == list: # iterate through items of list
102 for item in definition:
103 self.extract_values(item)
104 elif type(definition) == dict: # add dict items to map
105 for key, value in definition.items():
106 self.add_value(key, value)
107
108 def add_value(self, key, value):
109 """Add value to values table, create key if it doesn't exist"""
110 if key in self.values:
111 self.values[key].add(str(value))
112 else:
113 self.values[key] = { str(value) }
114
115 def get_logsource(self):
116 """Returns logsource configuration object for current rule"""
117 try:
118 ls_rule = self.parsedyaml['logsource']
119 except KeyError:
120 return None
121
122 try:
123 category = ls_rule['category']
124 except KeyError:
125 category = None
126 try:
127 product = ls_rule['product']
128 except KeyError:
129 product = None
130 try:
131 service = ls_rule['service']
132 except KeyError:
133 service = None
134
135 return self.config.get_logsource(category, product, service)
136
137 def build_conditions(self, condition_func, items):
138 cond = condition_func()
139 for item in items:
140 if type(item) is list:
141 cond.add(self.build_conditions(ConditionAND, item))
142 else:
143 mapping = self.config.get_fieldmapping(item[0])
144 cond.add(mapping.resolve(item[0], item[1], self))
145
146 return cond
147
148 def get_logsource_condition(self):
149 logsource = self.get_logsource()
150 if logsource is None:
151 return None
152 else:
153 cond = ConditionAND()
154 if self.config.get_logsourcemerging() == 'or':
155 cond.add(self.build_conditions(ConditionOR, logsource.conditions))
156 else:
157 cond.add(self.build_conditions(ConditionAND, logsource.conditions))
158
159 # Add index condition if supported by backend and defined in log source
160 index_field = self.config.get_indexfield()
161 indices = logsource.index
162 if len(indices) > 0 and index_field is not None: # at least one index given and backend knows about indices in conditions
163 if len(indices) > 1: # More than one index, search in all by ORing them together
164 index_cond = ConditionOR()
165 for index in indices:
166 index_cond.add((index_field, index))
167 cond.add(index_cond)
168 else: # only one index, add directly to AND from above
169 cond.add((index_field, indices[0]))
170
171 # Add free-text search condition, expressed in the configuration as 'search' field.
172 if len(logsource.search) > 0:
173 for item in logsource.search:
174 cond.add(SigmaSearchValueAsIs(item))
175
176 return cond
177
[end of tools/sigma/parser/rule.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/tools/sigma/parser/rule.py b/tools/sigma/parser/rule.py
--- a/tools/sigma/parser/rule.py
+++ b/tools/sigma/parser/rule.py
@@ -83,6 +83,9 @@
for key, value in definition.items():
if "|" in key: # field name contains value modifier
fieldname, *modifiers = key.split("|")
+ if "cidr" in modifiers: # Add other unsupported modifiers here
+ raise SigmaParseError("Cannot convert the rule. Unsupported new cidr modifier by SIGMAC. Please use the new PySigma/SigmaCLI to be able to convert the rule")
+ break
value = apply_modifiers(value, modifiers)
else:
fieldname = key
| {"golden_diff": "diff --git a/tools/sigma/parser/rule.py b/tools/sigma/parser/rule.py\n--- a/tools/sigma/parser/rule.py\n+++ b/tools/sigma/parser/rule.py\n@@ -83,6 +83,9 @@\n for key, value in definition.items():\n if \"|\" in key: # field name contains value modifier\n fieldname, *modifiers = key.split(\"|\")\n+ if \"cidr\" in modifiers: # Add other unsupported modifiers here\n+ raise SigmaParseError(\"Cannot convert the rule. Unsupported new cidr modifier by SIGMAC. Please use the new PySigma/SigmaCLI to be able to convert the rule\")\n+ break\n value = apply_modifiers(value, modifiers)\n else:\n fieldname = key\n", "issue": "Unknown field modifier in master rules\nsigmac fails to parse both `rules/windows/builtin/security/win_security_successful_external_remote_smb_login.yml` and `rules/windows/builtin/security/win_security_successful_external_remote_rdp_login.yml` due to an unknown field modifier, `IpAddress|cidr`. The unit tests also failed https://github.com/SigmaHQ/sigma/actions/runs/4052855667/jobs/6972774488#step:6:66.\n", "before_files": [{"content": "# Sigma parser\n# Copyright 2016-2019 Thomas Patzke, Florian Roth\n\n# This program is free software: you can redistribute it and/or modify\n# it under the terms of the GNU Lesser General Public License as published by\n# the Free Software Foundation, either version 3 of the License, or\n# (at your option) any later version.\n\n# This program is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n# GNU Lesser General Public License for more details.\n\n# You should have received a copy of the GNU Lesser General Public License\n# along with this program. If not, see <http://www.gnu.org/licenses/>.\n\nimport re\nfrom .exceptions import SigmaParseError\nfrom .condition import SigmaConditionTokenizer, SigmaConditionParser, ConditionAND, ConditionOR, ConditionNULLValue, SigmaSearchValueAsIs\nfrom .modifiers import apply_modifiers\n\nclass SigmaParser:\n \"\"\"Parse a Sigma rule (definitions, conditions and aggregations)\"\"\"\n def __init__(self, sigma, config):\n self.definitions = dict()\n self.values = dict()\n self.config = config\n self.parsedyaml = sigma\n self.parse_sigma()\n\n def parse_sigma(self):\n try: # definition uniqueness check\n for definitionName, definition in self.parsedyaml[\"detection\"].items():\n if definitionName != \"condition\":\n self.definitions[definitionName] = definition\n self.extract_values(definition) # builds key-values-table in self.values\n except KeyError:\n raise SigmaParseError(\"No detection definitions found\")\n\n try: # tokenization\n conditions = self.parsedyaml[\"detection\"][\"condition\"]\n self.condtoken = list() # list of tokenized conditions\n if type(conditions) == str:\n self.condtoken.append(SigmaConditionTokenizer(conditions))\n elif type(conditions) == list:\n for condition in conditions:\n self.condtoken.append(SigmaConditionTokenizer(condition))\n except KeyError:\n raise SigmaParseError(\"No condition found\")\n\n self.condparsed = list() # list of parsed conditions\n for tokens in self.condtoken:\n condparsed = SigmaConditionParser(self, tokens)\n self.condparsed.append(condparsed)\n\n def parse_definition_byname(self, definitionName, condOverride=None):\n try:\n definition = self.definitions[definitionName]\n except KeyError as e:\n raise SigmaParseError(\"Unknown definition '%s'\" % definitionName) from e\n return self.parse_definition(definition, condOverride)\n\n def parse_definition(self, definition, condOverride=None):\n if type(definition) not in (dict, list):\n raise SigmaParseError(\"Expected map or list, got type %s: '%s'\" % (type(definition), str(definition)))\n\n if type(definition) == list: # list of values or maps\n if condOverride: # condition given through rule detection condition, e.g. 1 of x\n cond = condOverride()\n else: # no condition given, use default from spec\n cond = ConditionOR()\n\n subcond = None\n for value in definition:\n if type(value) in (str, int):\n cond.add(value)\n elif type(value) in (dict, list):\n cond.add(self.parse_definition(value))\n else:\n raise SigmaParseError(\"Definition list may only contain plain values or maps\")\n elif type(definition) == dict: # map\n cond = ConditionAND()\n for key, value in definition.items():\n if \"|\" in key: # field name contains value modifier\n fieldname, *modifiers = key.split(\"|\")\n value = apply_modifiers(value, modifiers)\n else:\n fieldname = key\n mapping = self.config.get_fieldmapping(fieldname)\n if isinstance(value, (ConditionAND, ConditionOR)): # value is condition node (by transformation modifier)\n value.items = [ mapping.resolve(key, item, self) for item in value.items ]\n cond.add(value)\n else: # plain value or something unexpected (caught by backends)\n mapped = mapping.resolve(key, value, self)\n cond.add(mapped)\n\n return cond\n\n def extract_values(self, definition):\n \"\"\"Extract all values from map key:value pairs info self.values\"\"\"\n if type(definition) == list: # iterate through items of list\n for item in definition:\n self.extract_values(item)\n elif type(definition) == dict: # add dict items to map\n for key, value in definition.items():\n self.add_value(key, value)\n\n def add_value(self, key, value):\n \"\"\"Add value to values table, create key if it doesn't exist\"\"\"\n if key in self.values:\n self.values[key].add(str(value))\n else:\n self.values[key] = { str(value) }\n\n def get_logsource(self):\n \"\"\"Returns logsource configuration object for current rule\"\"\"\n try:\n ls_rule = self.parsedyaml['logsource']\n except KeyError:\n return None\n\n try:\n category = ls_rule['category']\n except KeyError:\n category = None\n try:\n product = ls_rule['product']\n except KeyError:\n product = None\n try:\n service = ls_rule['service']\n except KeyError:\n service = None\n\n return self.config.get_logsource(category, product, service)\n\n def build_conditions(self, condition_func, items):\n cond = condition_func()\n for item in items:\n if type(item) is list:\n cond.add(self.build_conditions(ConditionAND, item))\n else:\n mapping = self.config.get_fieldmapping(item[0])\n cond.add(mapping.resolve(item[0], item[1], self))\n\n return cond\n\n def get_logsource_condition(self):\n logsource = self.get_logsource()\n if logsource is None:\n return None\n else:\n cond = ConditionAND()\n if self.config.get_logsourcemerging() == 'or':\n cond.add(self.build_conditions(ConditionOR, logsource.conditions))\n else:\n cond.add(self.build_conditions(ConditionAND, logsource.conditions))\n\n # Add index condition if supported by backend and defined in log source\n index_field = self.config.get_indexfield()\n indices = logsource.index\n if len(indices) > 0 and index_field is not None: # at least one index given and backend knows about indices in conditions\n if len(indices) > 1: # More than one index, search in all by ORing them together\n index_cond = ConditionOR()\n for index in indices:\n index_cond.add((index_field, index))\n cond.add(index_cond)\n else: # only one index, add directly to AND from above\n cond.add((index_field, indices[0]))\n\n # Add free-text search condition, expressed in the configuration as 'search' field.\n if len(logsource.search) > 0:\n for item in logsource.search:\n cond.add(SigmaSearchValueAsIs(item))\n\n return cond\n", "path": "tools/sigma/parser/rule.py"}]} | 2,616 | 164 |
gh_patches_debug_346 | rasdani/github-patches | git_diff | vyperlang__vyper-3207 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
variables named `UNREACHABLE` can be shadowed by `raise`and `assert` when used with `UNREACHABLE`
### Version Information
* vyper Version (output of `vyper --version`): 0.3.8+commit.6020b8bb
* OS: OSX
* Python Version (output of `python --version`): 3.8.0
### What's your issue about?
`UNREACHABLE` is not a reserved keyword. For someone who is not familiar with the custom semantic of `UNREACHABLE` when used as a reason string for a `raise` or `assert` statement, the fact that in this context, any previously defined variable named `UNREACHABLE` will be shadowed by this new semantic might be confusing.
To illustrate this, in the following contract, a call to `bar` will revert with `invalid opcode` and not `this is unreachable` as one could imagine.
```Vyper
@external
def bar():
UNREACHABLE: String[20] = "this is unreachable"
x: uint256 = 3
assert 2>x, UNREACHABLE
```
### How can it be fixed?
An option could be to make `UNREACHABLE` a reserved keyword but some other alternative less restrictive might be better.
</issue>
<code>
[start of vyper/semantics/namespace.py]
1 import contextlib
2 import re
3
4 from vyper.evm.opcodes import OPCODES
5 from vyper.exceptions import (
6 CompilerPanic,
7 NamespaceCollision,
8 StructureException,
9 UndeclaredDefinition,
10 )
11 from vyper.semantics.analysis.levenshtein_utils import get_levenshtein_error_suggestions
12
13
14 class Namespace(dict):
15 """
16 Dictionary subclass that represents the namespace of a contract.
17
18 Attributes
19 ----------
20 _scopes : List[Set]
21 List of sets containing the key names for each scope
22 """
23
24 def __init__(self):
25 super().__init__()
26 self._scopes = []
27 # NOTE cyclic imports!
28 # TODO: break this cycle by providing an `init_vyper_namespace` in 3rd module
29 from vyper.builtins.functions import get_builtin_functions
30 from vyper.semantics import environment
31 from vyper.semantics.analysis.base import VarInfo
32 from vyper.semantics.types import get_types
33
34 self.update(get_types())
35 self.update(environment.get_constant_vars())
36 self.update({k: VarInfo(b) for (k, b) in get_builtin_functions().items()})
37
38 def __eq__(self, other):
39 return self is other
40
41 def __setitem__(self, attr, obj):
42 if self._scopes:
43 self.validate_assignment(attr)
44 self._scopes[-1].add(attr)
45 assert isinstance(attr, str), f"not a string: {attr}"
46 super().__setitem__(attr, obj)
47
48 def __getitem__(self, key):
49 if key not in self:
50 suggestions_str = get_levenshtein_error_suggestions(key, self, 0.2)
51 raise UndeclaredDefinition(f"'{key}' has not been declared. {suggestions_str}")
52 return super().__getitem__(key)
53
54 def __enter__(self):
55 if not self._scopes:
56 raise CompilerPanic("Context manager must be invoked via namespace.enter_scope()")
57
58 def __exit__(self, exc_type, exc_value, traceback):
59 if not self._scopes:
60 raise CompilerPanic("Bad use of namespace as a context manager")
61 for key in self._scopes.pop():
62 del self[key]
63
64 def enter_scope(self):
65 """
66 Enter a new scope within the namespace.
67
68 Called as a context manager, e.g. `with namespace.enter_scope():`
69 All items that are added within the context are removed upon exit.
70 """
71 # NOTE cyclic imports!
72 from vyper.semantics import environment
73
74 self._scopes.append(set())
75
76 if len(self._scopes) == 1:
77 # add mutable vars (`self`) to the initial scope
78 self.update(environment.get_mutable_vars())
79
80 return self
81
82 def update(self, other):
83 for key, value in other.items():
84 self.__setitem__(key, value)
85
86 def clear(self):
87 super().clear()
88 self.__init__()
89
90 def validate_assignment(self, attr):
91 validate_identifier(attr)
92 if attr in self:
93 obj = super().__getitem__(attr)
94 raise NamespaceCollision(f"'{attr}' has already been declared as a {obj}")
95
96
97 def get_namespace():
98 """
99 Get the active namespace object.
100 """
101 global _namespace
102 try:
103 return _namespace
104 except NameError:
105 _namespace = Namespace()
106 return _namespace
107
108
109 @contextlib.contextmanager
110 def override_global_namespace(ns):
111 global _namespace
112 tmp = _namespace
113 try:
114 # clobber global namespace
115 _namespace = ns
116 yield
117 finally:
118 # unclobber
119 _namespace = tmp
120
121
122 def validate_identifier(attr):
123 namespace = get_namespace()
124 if attr in namespace and attr not in [x for i in namespace._scopes for x in i]:
125 raise NamespaceCollision(f"Cannot assign to '{attr}', it is a builtin")
126 if attr.lower() in RESERVED_KEYWORDS or attr.upper() in OPCODES:
127 raise StructureException(f"'{attr}' is a reserved keyword")
128 if not re.match("^[_a-zA-Z][a-zA-Z0-9_]*$", attr):
129 raise StructureException(f"'{attr}' contains invalid character(s)")
130
131
132 # Cannot be used for variable or member naming
133 RESERVED_KEYWORDS = {
134 # decorators
135 "public",
136 "external",
137 "nonpayable",
138 "constant",
139 "immutable",
140 "internal",
141 "payable",
142 "nonreentrant",
143 # "class" keywords
144 "interface",
145 "struct",
146 "event",
147 "enum",
148 # control flow
149 "if",
150 "for",
151 "while",
152 "until",
153 "pass",
154 "def",
155 # EVM operations
156 "send",
157 "selfdestruct",
158 "assert",
159 "raise",
160 "throw",
161 # special functions (no name mangling)
162 "init",
163 "_init_",
164 "___init___",
165 "____init____",
166 "default",
167 "_default_",
168 "___default___",
169 "____default____",
170 # environment variables
171 "chainid",
172 "blockhash",
173 "timestamp",
174 "timedelta",
175 # boolean literals
176 "true",
177 "false",
178 # more control flow and special operations
179 "this",
180 "continue",
181 "range",
182 # None sentinal value
183 "none",
184 # more special operations
185 "indexed",
186 # denominations
187 "ether",
188 "wei",
189 "finney",
190 "szabo",
191 "shannon",
192 "lovelace",
193 "ada",
194 "babbage",
195 "gwei",
196 "kwei",
197 "mwei",
198 "twei",
199 "pwei",
200 # `address` members
201 "balance",
202 "codesize",
203 "codehash",
204 "code",
205 "is_contract",
206 # units
207 "units",
208 # sentinal constant values
209 "zero_address",
210 "empty_bytes32",
211 "max_int128",
212 "min_int128",
213 "max_decimal",
214 "min_decimal",
215 "max_uint256",
216 "zero_wei",
217 }
218
[end of vyper/semantics/namespace.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/vyper/semantics/namespace.py b/vyper/semantics/namespace.py
--- a/vyper/semantics/namespace.py
+++ b/vyper/semantics/namespace.py
@@ -158,6 +158,7 @@
"assert",
"raise",
"throw",
+ "unreachable",
# special functions (no name mangling)
"init",
"_init_",
| {"golden_diff": "diff --git a/vyper/semantics/namespace.py b/vyper/semantics/namespace.py\n--- a/vyper/semantics/namespace.py\n+++ b/vyper/semantics/namespace.py\n@@ -158,6 +158,7 @@\n \"assert\",\n \"raise\",\n \"throw\",\n+ \"unreachable\",\n # special functions (no name mangling)\n \"init\",\n \"_init_\",\n", "issue": "variables named `UNREACHABLE` can be shadowed by `raise`and `assert` when used with `UNREACHABLE`\n### Version Information\r\n\r\n* vyper Version (output of `vyper --version`): 0.3.8+commit.6020b8bb\r\n* OS: OSX\r\n* Python Version (output of `python --version`): 3.8.0\r\n\r\n### What's your issue about?\r\n\r\n`UNREACHABLE` is not a reserved keyword. For someone who is not familiar with the custom semantic of `UNREACHABLE` when used as a reason string for a `raise` or `assert` statement, the fact that in this context, any previously defined variable named `UNREACHABLE` will be shadowed by this new semantic might be confusing.\r\nTo illustrate this, in the following contract, a call to `bar` will revert with `invalid opcode` and not `this is unreachable` as one could imagine.\r\n```Vyper\r\n@external\r\ndef bar():\r\n UNREACHABLE: String[20] = \"this is unreachable\"\r\n x: uint256 = 3\r\n assert 2>x, UNREACHABLE\r\n```\r\n### How can it be fixed?\r\n\r\nAn option could be to make `UNREACHABLE` a reserved keyword but some other alternative less restrictive might be better.\r\n\n", "before_files": [{"content": "import contextlib\nimport re\n\nfrom vyper.evm.opcodes import OPCODES\nfrom vyper.exceptions import (\n CompilerPanic,\n NamespaceCollision,\n StructureException,\n UndeclaredDefinition,\n)\nfrom vyper.semantics.analysis.levenshtein_utils import get_levenshtein_error_suggestions\n\n\nclass Namespace(dict):\n \"\"\"\n Dictionary subclass that represents the namespace of a contract.\n\n Attributes\n ----------\n _scopes : List[Set]\n List of sets containing the key names for each scope\n \"\"\"\n\n def __init__(self):\n super().__init__()\n self._scopes = []\n # NOTE cyclic imports!\n # TODO: break this cycle by providing an `init_vyper_namespace` in 3rd module\n from vyper.builtins.functions import get_builtin_functions\n from vyper.semantics import environment\n from vyper.semantics.analysis.base import VarInfo\n from vyper.semantics.types import get_types\n\n self.update(get_types())\n self.update(environment.get_constant_vars())\n self.update({k: VarInfo(b) for (k, b) in get_builtin_functions().items()})\n\n def __eq__(self, other):\n return self is other\n\n def __setitem__(self, attr, obj):\n if self._scopes:\n self.validate_assignment(attr)\n self._scopes[-1].add(attr)\n assert isinstance(attr, str), f\"not a string: {attr}\"\n super().__setitem__(attr, obj)\n\n def __getitem__(self, key):\n if key not in self:\n suggestions_str = get_levenshtein_error_suggestions(key, self, 0.2)\n raise UndeclaredDefinition(f\"'{key}' has not been declared. {suggestions_str}\")\n return super().__getitem__(key)\n\n def __enter__(self):\n if not self._scopes:\n raise CompilerPanic(\"Context manager must be invoked via namespace.enter_scope()\")\n\n def __exit__(self, exc_type, exc_value, traceback):\n if not self._scopes:\n raise CompilerPanic(\"Bad use of namespace as a context manager\")\n for key in self._scopes.pop():\n del self[key]\n\n def enter_scope(self):\n \"\"\"\n Enter a new scope within the namespace.\n\n Called as a context manager, e.g. `with namespace.enter_scope():`\n All items that are added within the context are removed upon exit.\n \"\"\"\n # NOTE cyclic imports!\n from vyper.semantics import environment\n\n self._scopes.append(set())\n\n if len(self._scopes) == 1:\n # add mutable vars (`self`) to the initial scope\n self.update(environment.get_mutable_vars())\n\n return self\n\n def update(self, other):\n for key, value in other.items():\n self.__setitem__(key, value)\n\n def clear(self):\n super().clear()\n self.__init__()\n\n def validate_assignment(self, attr):\n validate_identifier(attr)\n if attr in self:\n obj = super().__getitem__(attr)\n raise NamespaceCollision(f\"'{attr}' has already been declared as a {obj}\")\n\n\ndef get_namespace():\n \"\"\"\n Get the active namespace object.\n \"\"\"\n global _namespace\n try:\n return _namespace\n except NameError:\n _namespace = Namespace()\n return _namespace\n\n\[email protected]\ndef override_global_namespace(ns):\n global _namespace\n tmp = _namespace\n try:\n # clobber global namespace\n _namespace = ns\n yield\n finally:\n # unclobber\n _namespace = tmp\n\n\ndef validate_identifier(attr):\n namespace = get_namespace()\n if attr in namespace and attr not in [x for i in namespace._scopes for x in i]:\n raise NamespaceCollision(f\"Cannot assign to '{attr}', it is a builtin\")\n if attr.lower() in RESERVED_KEYWORDS or attr.upper() in OPCODES:\n raise StructureException(f\"'{attr}' is a reserved keyword\")\n if not re.match(\"^[_a-zA-Z][a-zA-Z0-9_]*$\", attr):\n raise StructureException(f\"'{attr}' contains invalid character(s)\")\n\n\n# Cannot be used for variable or member naming\nRESERVED_KEYWORDS = {\n # decorators\n \"public\",\n \"external\",\n \"nonpayable\",\n \"constant\",\n \"immutable\",\n \"internal\",\n \"payable\",\n \"nonreentrant\",\n # \"class\" keywords\n \"interface\",\n \"struct\",\n \"event\",\n \"enum\",\n # control flow\n \"if\",\n \"for\",\n \"while\",\n \"until\",\n \"pass\",\n \"def\",\n # EVM operations\n \"send\",\n \"selfdestruct\",\n \"assert\",\n \"raise\",\n \"throw\",\n # special functions (no name mangling)\n \"init\",\n \"_init_\",\n \"___init___\",\n \"____init____\",\n \"default\",\n \"_default_\",\n \"___default___\",\n \"____default____\",\n # environment variables\n \"chainid\",\n \"blockhash\",\n \"timestamp\",\n \"timedelta\",\n # boolean literals\n \"true\",\n \"false\",\n # more control flow and special operations\n \"this\",\n \"continue\",\n \"range\",\n # None sentinal value\n \"none\",\n # more special operations\n \"indexed\",\n # denominations\n \"ether\",\n \"wei\",\n \"finney\",\n \"szabo\",\n \"shannon\",\n \"lovelace\",\n \"ada\",\n \"babbage\",\n \"gwei\",\n \"kwei\",\n \"mwei\",\n \"twei\",\n \"pwei\",\n # `address` members\n \"balance\",\n \"codesize\",\n \"codehash\",\n \"code\",\n \"is_contract\",\n # units\n \"units\",\n # sentinal constant values\n \"zero_address\",\n \"empty_bytes32\",\n \"max_int128\",\n \"min_int128\",\n \"max_decimal\",\n \"min_decimal\",\n \"max_uint256\",\n \"zero_wei\",\n}\n", "path": "vyper/semantics/namespace.py"}]} | 2,715 | 95 |
gh_patches_debug_8669 | rasdani/github-patches | git_diff | jupyterhub__jupyterhub-1337 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Alembic causes failures on fresh install when postgres db username has '@' in it
I'm using a postgres db where usernames are of the form '[email protected]'. This causes alembic to fail with:
```
configparser.InterpolationSyntaxError: '%' must be followed by '%' or '(', found: '%40datahub-fa17-db:<my-db-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging'
```
Full traceback below. Note that it was also interleaved with other log lines, not sure why.
```
[D 2017-08-11 23:29:39.187 JupyterHub application:555] Looking for /srv/jupyterhub_config in /srv/jupyterhub
[D 2017-08-11 23:29:39.221 JupyterHub application:577] Loaded config file: /srv/jupyterhub_config.py
[I 2017-08-11 23:29:39.437 JupyterHub app:839] Loading cookie_secret from env[JPY_COOKIE_SECRET]
[D 2017-08-11 23:29:39.437 JupyterHub app:894] Connecting to db: postgresql+psycopg2://datahub-fa17-staging@datahub-fa17-db:<my-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging
[D 2017-08-11 23:29:40.808 JupyterHub orm:474] Stamping empty database with alembic revision 3ec6993fe20c
[E 2017-08-11 23:29:40.813 JupyterHub app:1626]
Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/app.py", line 1623, in launch_instance_async
yield self.initialize(argv)
File "/usr/lib/python3.5/types.py", line 199, in __next__
return next(self.__wrapped)
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/app.py", line 1376, in initialize
self.init_db()
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/app.py", line 900, in init_db
**self.db_kwargs
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/orm.py", line 530, in new_session_factory
check_db_revision(engine)
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/orm.py", line 475, in check_db_revision
singleuser.uid 1000
singleuser.fs-gid 1000
singleuser.storage.type hostPath
singleuser.storage.extra-volumes [{'hostPath': {'path': '/data/homes/{username}'}, 'name': 'home'}]
singleuser.storage.extra-volume-mounts [{'name': 'home', 'mountPath': '/home/jovyan'}]
singleuser.memory.limit 1G
singleuser.memory.guarantee 1G
auth.type google
auth.google.client-id <more-secret>
auth.google.client-secret <some-secret>
auth.google.callback-url http://datahub-staging.yuvi.in/hub/oauth_callback
auth.google.hosted-domain berkeley.edu
alembic.command.stamp(cfg, head)
File "/usr/local/lib/python3.5/dist-packages/alembic/command.py", line 496, in stamp
script.run_env()
File "/usr/local/lib/python3.5/dist-packages/alembic/script/base.py", line 425, in run_env
util.load_python_file(self.dir, 'env.py')
File "/usr/local/lib/python3.5/dist-packages/alembic/util/pyfiles.py", line 93, in load_python_file
module = load_module_py(module_id, path)
File "/usr/local/lib/python3.5/dist-packages/alembic/util/compat.py", line 64, in load_module_py
module_id, path).load_module(module_id)
File "<frozen importlib._bootstrap_external>", line 396, in _check_name_wrapper
File "<frozen importlib._bootstrap_external>", line 817, in load_module
File "<frozen importlib._bootstrap_external>", line 676, in load_module
File "<frozen importlib._bootstrap>", line 268, in _load_module_shim
File "<frozen importlib._bootstrap>", line 693, in _load
File "<frozen importlib._bootstrap>", line 673, in _load_unlocked
auth.google.login-service Calnet ID
auth.google.hosted-domain berkeley.edu
admin.access True
cull.enabled True
cull.timeout 3600
cull.every 600
hub.base_url /
hub.db_url postgresql+psycopg2://datahub-fa17-staging@datahub-fa17-db:<my-db-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging
singleuser.cmd jupyterhub-singleuser
File "<frozen importlib._bootstrap_external>", line 673, in exec_module
File "<frozen importlib._bootstrap>", line 222, in _call_with_frames_removed
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/alembic/env.py", line 82, in <module>
run_migrations_online()
File "/usr/local/lib/python3.5/dist-packages/jupyterhub/alembic/env.py", line 66, in run_migrations_online
config.get_section(config.config_ini_section),
File "/usr/local/lib/python3.5/dist-packages/alembic/config.py", line 201, in get_section
return dict(self.file_config.items(name))
File "/usr/lib/python3.5/configparser.py", line 855, in items
return [(option, value_getter(option)) for option in d.keys()]
File "/usr/lib/python3.5/configparser.py", line 855, in <listcomp>
return [(option, value_getter(option)) for option in d.keys()]
File "/usr/lib/python3.5/configparser.py", line 852, in <lambda>
section, option, d[option], d)
File "/usr/lib/python3.5/configparser.py", line 393, in before_get
self._interpolate_some(parser, option, L, value, section, defaults, 1)
File "/usr/lib/python3.5/configparser.py", line 443, in _interpolate_some
"found: %r" % (rest,))
configparser.InterpolationSyntaxError: '%' must be followed by '%' or '(', found: '%40datahub-fa17-db:<my-db-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging'
[D 2017-08-11 23:29:40.816 JupyterHub application:647] Exiting application: jupyterhub
```
</issue>
<code>
[start of jupyterhub/dbutil.py]
1 """Database utilities for JupyterHub"""
2 # Copyright (c) Jupyter Development Team.
3 # Distributed under the terms of the Modified BSD License.
4
5 # Based on pgcontents.utils.migrate, used under the Apache license.
6
7 from contextlib import contextmanager
8 import os
9 from subprocess import check_call
10 import sys
11 from tempfile import TemporaryDirectory
12
13 _here = os.path.abspath(os.path.dirname(__file__))
14
15 ALEMBIC_INI_TEMPLATE_PATH = os.path.join(_here, 'alembic.ini')
16 ALEMBIC_DIR = os.path.join(_here, 'alembic')
17
18
19 def write_alembic_ini(alembic_ini='alembic.ini', db_url='sqlite:///jupyterhub.sqlite'):
20 """Write a complete alembic.ini from our template.
21
22 Parameters
23 ----------
24
25 alembic_ini: str
26 path to the alembic.ini file that should be written.
27 db_url: str
28 The SQLAlchemy database url, e.g. `sqlite:///jupyterhub.sqlite`.
29 """
30 with open(ALEMBIC_INI_TEMPLATE_PATH) as f:
31 alembic_ini_tpl = f.read()
32
33 with open(alembic_ini, 'w') as f:
34 f.write(
35 alembic_ini_tpl.format(
36 alembic_dir=ALEMBIC_DIR,
37 db_url=db_url,
38 )
39 )
40
41
42 @contextmanager
43 def _temp_alembic_ini(db_url):
44 """Context manager for temporary JupyterHub alembic directory
45
46 Temporarily write an alembic.ini file for use with alembic migration scripts.
47
48 Context manager yields alembic.ini path.
49
50 Parameters
51 ----------
52
53 db_url: str
54 The SQLAlchemy database url, e.g. `sqlite:///jupyterhub.sqlite`.
55
56 Returns
57 -------
58
59 alembic_ini: str
60 The path to the temporary alembic.ini that we have created.
61 This file will be cleaned up on exit from the context manager.
62 """
63 with TemporaryDirectory() as td:
64 alembic_ini = os.path.join(td, 'alembic.ini')
65 write_alembic_ini(alembic_ini, db_url)
66 yield alembic_ini
67
68
69 def upgrade(db_url, revision='head'):
70 """Upgrade the given database to revision.
71
72 db_url: str
73 The SQLAlchemy database url, e.g. `sqlite:///jupyterhub.sqlite`.
74 revision: str [default: head]
75 The alembic revision to upgrade to.
76 """
77 with _temp_alembic_ini(db_url) as alembic_ini:
78 check_call(
79 ['alembic', '-c', alembic_ini, 'upgrade', revision]
80 )
81
82
83 def _alembic(*args):
84 """Run an alembic command with a temporary alembic.ini"""
85 with _temp_alembic_ini('sqlite:///jupyterhub.sqlite') as alembic_ini:
86 check_call(
87 ['alembic', '-c', alembic_ini] + list(args)
88 )
89
90
91 if __name__ == '__main__':
92 _alembic(*sys.argv[1:])
93
[end of jupyterhub/dbutil.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/jupyterhub/dbutil.py b/jupyterhub/dbutil.py
--- a/jupyterhub/dbutil.py
+++ b/jupyterhub/dbutil.py
@@ -34,7 +34,11 @@
f.write(
alembic_ini_tpl.format(
alembic_dir=ALEMBIC_DIR,
- db_url=db_url,
+ # If there are any %s in the URL, they should be replaced with %%, since ConfigParser
+ # by default uses %() for substitution. You'll get %s in your URL when you have usernames
+ # with special chars (such as '@') that need to be URL encoded. URL Encoding is done with %s.
+ # YAY for nested templates?
+ db_url=str(db_url).replace('%', '%%'),
)
)
| {"golden_diff": "diff --git a/jupyterhub/dbutil.py b/jupyterhub/dbutil.py\n--- a/jupyterhub/dbutil.py\n+++ b/jupyterhub/dbutil.py\n@@ -34,7 +34,11 @@\n f.write(\n alembic_ini_tpl.format(\n alembic_dir=ALEMBIC_DIR,\n- db_url=db_url,\n+ # If there are any %s in the URL, they should be replaced with %%, since ConfigParser\n+ # by default uses %() for substitution. You'll get %s in your URL when you have usernames\n+ # with special chars (such as '@') that need to be URL encoded. URL Encoding is done with %s.\n+ # YAY for nested templates?\n+ db_url=str(db_url).replace('%', '%%'),\n )\n )\n", "issue": "Alembic causes failures on fresh install when postgres db username has '@' in it\nI'm using a postgres db where usernames are of the form '[email protected]'. This causes alembic to fail with:\r\n\r\n```\r\n configparser.InterpolationSyntaxError: '%' must be followed by '%' or '(', found: '%40datahub-fa17-db:<my-db-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging'\r\n```\r\n\r\nFull traceback below. Note that it was also interleaved with other log lines, not sure why.\r\n\r\n```\r\n[D 2017-08-11 23:29:39.187 JupyterHub application:555] Looking for /srv/jupyterhub_config in /srv/jupyterhub\r\n[D 2017-08-11 23:29:39.221 JupyterHub application:577] Loaded config file: /srv/jupyterhub_config.py\r\n[I 2017-08-11 23:29:39.437 JupyterHub app:839] Loading cookie_secret from env[JPY_COOKIE_SECRET]\r\n[D 2017-08-11 23:29:39.437 JupyterHub app:894] Connecting to db: postgresql+psycopg2://datahub-fa17-staging@datahub-fa17-db:<my-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging\r\n[D 2017-08-11 23:29:40.808 JupyterHub orm:474] Stamping empty database with alembic revision 3ec6993fe20c\r\n[E 2017-08-11 23:29:40.813 JupyterHub app:1626]\r\n Traceback (most recent call last):\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/app.py\", line 1623, in launch_instance_async\r\n yield self.initialize(argv)\r\n File \"/usr/lib/python3.5/types.py\", line 199, in __next__\r\n return next(self.__wrapped)\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/app.py\", line 1376, in initialize\r\n self.init_db()\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/app.py\", line 900, in init_db\r\n **self.db_kwargs\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/orm.py\", line 530, in new_session_factory\r\n check_db_revision(engine)\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/orm.py\", line 475, in check_db_revision\r\nsingleuser.uid 1000\r\nsingleuser.fs-gid 1000\r\nsingleuser.storage.type hostPath\r\nsingleuser.storage.extra-volumes [{'hostPath': {'path': '/data/homes/{username}'}, 'name': 'home'}]\r\nsingleuser.storage.extra-volume-mounts [{'name': 'home', 'mountPath': '/home/jovyan'}]\r\nsingleuser.memory.limit 1G\r\nsingleuser.memory.guarantee 1G\r\nauth.type google\r\nauth.google.client-id <more-secret>\r\nauth.google.client-secret <some-secret>\r\nauth.google.callback-url http://datahub-staging.yuvi.in/hub/oauth_callback\r\nauth.google.hosted-domain berkeley.edu\r\n alembic.command.stamp(cfg, head)\r\n File \"/usr/local/lib/python3.5/dist-packages/alembic/command.py\", line 496, in stamp\r\n script.run_env()\r\n File \"/usr/local/lib/python3.5/dist-packages/alembic/script/base.py\", line 425, in run_env\r\n util.load_python_file(self.dir, 'env.py')\r\n File \"/usr/local/lib/python3.5/dist-packages/alembic/util/pyfiles.py\", line 93, in load_python_file\r\n module = load_module_py(module_id, path)\r\n File \"/usr/local/lib/python3.5/dist-packages/alembic/util/compat.py\", line 64, in load_module_py\r\n module_id, path).load_module(module_id)\r\n File \"<frozen importlib._bootstrap_external>\", line 396, in _check_name_wrapper\r\n File \"<frozen importlib._bootstrap_external>\", line 817, in load_module\r\n File \"<frozen importlib._bootstrap_external>\", line 676, in load_module\r\n File \"<frozen importlib._bootstrap>\", line 268, in _load_module_shim\r\n File \"<frozen importlib._bootstrap>\", line 693, in _load\r\n File \"<frozen importlib._bootstrap>\", line 673, in _load_unlocked\r\nauth.google.login-service Calnet ID\r\nauth.google.hosted-domain berkeley.edu\r\nadmin.access True\r\ncull.enabled True\r\ncull.timeout 3600\r\ncull.every 600\r\nhub.base_url /\r\nhub.db_url postgresql+psycopg2://datahub-fa17-staging@datahub-fa17-db:<my-db-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging\r\nsingleuser.cmd jupyterhub-singleuser\r\n File \"<frozen importlib._bootstrap_external>\", line 673, in exec_module\r\n File \"<frozen importlib._bootstrap>\", line 222, in _call_with_frames_removed\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/alembic/env.py\", line 82, in <module>\r\n run_migrations_online()\r\n File \"/usr/local/lib/python3.5/dist-packages/jupyterhub/alembic/env.py\", line 66, in run_migrations_online\r\n config.get_section(config.config_ini_section),\r\n File \"/usr/local/lib/python3.5/dist-packages/alembic/config.py\", line 201, in get_section\r\n return dict(self.file_config.items(name))\r\n File \"/usr/lib/python3.5/configparser.py\", line 855, in items\r\n return [(option, value_getter(option)) for option in d.keys()]\r\n File \"/usr/lib/python3.5/configparser.py\", line 855, in <listcomp>\r\n return [(option, value_getter(option)) for option in d.keys()]\r\n File \"/usr/lib/python3.5/configparser.py\", line 852, in <lambda>\r\n section, option, d[option], d)\r\n File \"/usr/lib/python3.5/configparser.py\", line 393, in before_get\r\n self._interpolate_some(parser, option, L, value, section, defaults, 1)\r\n File \"/usr/lib/python3.5/configparser.py\", line 443, in _interpolate_some\r\n \"found: %r\" % (rest,))\r\n configparser.InterpolationSyntaxError: '%' must be followed by '%' or '(', found: '%40datahub-fa17-db:<my-db-password>@datahub-fa17-db.postgres.database.azure.com/datahub-fa17-staging'\r\n \r\n[D 2017-08-11 23:29:40.816 JupyterHub application:647] Exiting application: jupyterhub\r\n```\n", "before_files": [{"content": "\"\"\"Database utilities for JupyterHub\"\"\"\n# Copyright (c) Jupyter Development Team.\n# Distributed under the terms of the Modified BSD License.\n\n# Based on pgcontents.utils.migrate, used under the Apache license.\n\nfrom contextlib import contextmanager\nimport os\nfrom subprocess import check_call\nimport sys\nfrom tempfile import TemporaryDirectory\n\n_here = os.path.abspath(os.path.dirname(__file__))\n\nALEMBIC_INI_TEMPLATE_PATH = os.path.join(_here, 'alembic.ini')\nALEMBIC_DIR = os.path.join(_here, 'alembic')\n\n\ndef write_alembic_ini(alembic_ini='alembic.ini', db_url='sqlite:///jupyterhub.sqlite'):\n \"\"\"Write a complete alembic.ini from our template.\n\n Parameters\n ----------\n\n alembic_ini: str\n path to the alembic.ini file that should be written.\n db_url: str\n The SQLAlchemy database url, e.g. `sqlite:///jupyterhub.sqlite`.\n \"\"\"\n with open(ALEMBIC_INI_TEMPLATE_PATH) as f:\n alembic_ini_tpl = f.read()\n\n with open(alembic_ini, 'w') as f:\n f.write(\n alembic_ini_tpl.format(\n alembic_dir=ALEMBIC_DIR,\n db_url=db_url,\n )\n )\n\n\n@contextmanager\ndef _temp_alembic_ini(db_url):\n \"\"\"Context manager for temporary JupyterHub alembic directory\n\n Temporarily write an alembic.ini file for use with alembic migration scripts.\n\n Context manager yields alembic.ini path.\n\n Parameters\n ----------\n\n db_url: str\n The SQLAlchemy database url, e.g. `sqlite:///jupyterhub.sqlite`.\n\n Returns\n -------\n\n alembic_ini: str\n The path to the temporary alembic.ini that we have created.\n This file will be cleaned up on exit from the context manager.\n \"\"\"\n with TemporaryDirectory() as td:\n alembic_ini = os.path.join(td, 'alembic.ini')\n write_alembic_ini(alembic_ini, db_url)\n yield alembic_ini\n\n\ndef upgrade(db_url, revision='head'):\n \"\"\"Upgrade the given database to revision.\n\n db_url: str\n The SQLAlchemy database url, e.g. `sqlite:///jupyterhub.sqlite`.\n revision: str [default: head]\n The alembic revision to upgrade to.\n \"\"\"\n with _temp_alembic_ini(db_url) as alembic_ini:\n check_call(\n ['alembic', '-c', alembic_ini, 'upgrade', revision]\n )\n\n\ndef _alembic(*args):\n \"\"\"Run an alembic command with a temporary alembic.ini\"\"\"\n with _temp_alembic_ini('sqlite:///jupyterhub.sqlite') as alembic_ini:\n check_call(\n ['alembic', '-c', alembic_ini] + list(args)\n )\n\n\nif __name__ == '__main__':\n _alembic(*sys.argv[1:])\n", "path": "jupyterhub/dbutil.py"}]} | 3,051 | 180 |
gh_patches_debug_10229 | rasdani/github-patches | git_diff | pantsbuild__pants-20716 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
`[pex].emit_warnings` docs show `>` literally instead of `>`
**Describe the bug**
https://www.pantsbuild.org/2.20/reference/subsystems/pex#emit_warnings
**Pants version**
2.20
**OS**
N/A
**Additional info**
</issue>
<code>
[start of src/python/pants/backend/python/util_rules/pex_environment.py]
1 # Copyright 2019 Pants project contributors (see CONTRIBUTORS.md).
2 # Licensed under the Apache License, Version 2.0 (see LICENSE).
3
4 from __future__ import annotations
5
6 import os
7 from dataclasses import dataclass
8 from pathlib import PurePath
9 from typing import Mapping
10
11 from pants.core.subsystems.python_bootstrap import PythonBootstrap
12 from pants.core.util_rules import subprocess_environment, system_binaries
13 from pants.core.util_rules.adhoc_binaries import PythonBuildStandaloneBinary
14 from pants.core.util_rules.subprocess_environment import SubprocessEnvironmentVars
15 from pants.core.util_rules.system_binaries import BinaryPath
16 from pants.engine.engine_aware import EngineAwareReturnType
17 from pants.engine.rules import collect_rules, rule
18 from pants.option.global_options import NamedCachesDirOption
19 from pants.option.option_types import BoolOption, IntOption, StrListOption
20 from pants.option.subsystem import Subsystem
21 from pants.util.frozendict import FrozenDict
22 from pants.util.logging import LogLevel
23 from pants.util.memo import memoized_property
24 from pants.util.ordered_set import OrderedSet
25 from pants.util.strutil import softwrap
26
27
28 class PexSubsystem(Subsystem):
29 options_scope = "pex"
30 help = "How Pants uses Pex to run Python subprocesses."
31
32 class EnvironmentAware(Subsystem.EnvironmentAware):
33 # TODO(#9760): We'll want to deprecate this in favor of a global option which allows for a
34 # per-process override.
35
36 env_vars_used_by_options = ("PATH",)
37
38 _executable_search_paths = StrListOption(
39 default=["<PATH>"],
40 help=softwrap(
41 """
42 The PATH value that will be used by the PEX subprocess and any subprocesses it
43 spawns.
44
45 The special string `"<PATH>"` will expand to the contents of the PATH env var.
46 """
47 ),
48 advanced=True,
49 metavar="<binary-paths>",
50 )
51
52 @memoized_property
53 def path(self) -> tuple[str, ...]:
54 def iter_path_entries():
55 for entry in self._executable_search_paths:
56 if entry == "<PATH>":
57 path = self._options_env.get("PATH")
58 if path:
59 yield from path.split(os.pathsep)
60 else:
61 yield entry
62
63 return tuple(OrderedSet(iter_path_entries()))
64
65 _verbosity = IntOption(
66 default=0,
67 help="Set the verbosity level of PEX logging, from 0 (no logging) up to 9 (max logging).",
68 advanced=True,
69 )
70 venv_use_symlinks = BoolOption(
71 default=False,
72 help=softwrap(
73 """
74 When possible, use venvs whose site-packages directories are populated with symlinks.
75
76 Enabling this can save space in the `--named-caches-dir` directory
77 and lead to slightly faster execution times for Pants Python goals. Some
78 distributions do not work with symlinked venvs though, so you may not be able to
79 enable this optimization as a result.
80 """
81 ),
82 advanced=True,
83 )
84 emit_warnings = BoolOption(
85 default=False,
86 help=softwrap(
87 """
88 If warnings from Pex should be logged by Pants to the console.
89
90 Note: Pants uses Pex internally in some ways that trigger some warnings at the moment,
91 so enabling this may result in warnings not related to your code. See
92 <https://github.com/pantsbuild/pants/issues/20577> and
93 <https://github.com/pantsbuild/pants/issues/20586>.
94 """
95 ),
96 )
97
98 @property
99 def verbosity(self) -> int:
100 level = self._verbosity
101 if level < 0 or level > 9:
102 raise ValueError("verbosity level must be between 0 and 9")
103 return level
104
105
106 @dataclass(frozen=True)
107 class PythonExecutable(BinaryPath, EngineAwareReturnType):
108 """The BinaryPath of a Python executable for user code, along with some extras."""
109
110 append_only_caches: FrozenDict[str, str] = FrozenDict({})
111
112 def __init__(
113 self,
114 path: str,
115 fingerprint: str | None = None,
116 append_only_caches: Mapping[str, str] = FrozenDict({}),
117 ) -> None:
118 object.__setattr__(self, "append_only_caches", FrozenDict(append_only_caches))
119 super().__init__(path, fingerprint)
120 self.__post_init__()
121
122 def __post_init__(self) -> None:
123 if not PurePath(self.path).is_absolute():
124 raise ValueError(
125 softwrap(
126 f"""
127 PythonExecutable expects the path to be absolute. Tools like Pex internalize the
128 absolute path to Python (since `sys.executable` is expected to be absolute).
129
130 In order to ensure the cache key for Python process is "correct" (especially in
131 remote cache/execution situations) we require the Python path is absolute.
132
133 Got: {self.path}
134 """
135 )
136 )
137
138 def message(self) -> str:
139 return f"Selected {self.path} to run PEXes with."
140
141
142 @dataclass(frozen=True)
143 class PexEnvironment:
144 path: tuple[str, ...]
145 interpreter_search_paths: tuple[str, ...]
146 subprocess_environment_dict: FrozenDict[str, str]
147 named_caches_dir: PurePath
148 bootstrap_python: PythonBuildStandaloneBinary
149 venv_use_symlinks: bool = False
150
151 _PEX_ROOT_DIRNAME = "pex_root"
152
153 def in_sandbox(self, *, working_directory: str | None) -> CompletePexEnvironment:
154 pex_root = PurePath(".cache") / self._PEX_ROOT_DIRNAME
155 return CompletePexEnvironment(
156 _pex_environment=self,
157 pex_root=pex_root,
158 _working_directory=PurePath(working_directory) if working_directory else None,
159 append_only_caches=FrozenDict(
160 **{self._PEX_ROOT_DIRNAME: str(pex_root)},
161 **self.bootstrap_python.APPEND_ONLY_CACHES,
162 ),
163 )
164
165 def in_workspace(self) -> CompletePexEnvironment:
166 # N.B.: When running in the workspace the engine doesn't offer an append_only_caches
167 # service to setup a symlink to our named cache for us. As such, we point the PEX_ROOT
168 # directly at the underlying append only cache in that case to re-use results there and
169 # to keep the workspace from being dirtied by the creation of a new Pex cache rooted
170 # there.
171 pex_root = self.named_caches_dir / self._PEX_ROOT_DIRNAME
172 return CompletePexEnvironment(
173 _pex_environment=self,
174 pex_root=pex_root,
175 _working_directory=None,
176 append_only_caches=self.bootstrap_python.APPEND_ONLY_CACHES,
177 )
178
179 def venv_site_packages_copies_option(self, use_copies: bool) -> str:
180 if self.venv_use_symlinks and not use_copies:
181 return "--no-venv-site-packages-copies"
182 return "--venv-site-packages-copies"
183
184
185 @rule(desc="Prepare environment for running PEXes", level=LogLevel.DEBUG)
186 async def find_pex_python(
187 python_bootstrap: PythonBootstrap,
188 python_binary: PythonBuildStandaloneBinary,
189 pex_subsystem: PexSubsystem,
190 pex_environment_aware: PexSubsystem.EnvironmentAware,
191 subprocess_env_vars: SubprocessEnvironmentVars,
192 named_caches_dir: NamedCachesDirOption,
193 ) -> PexEnvironment:
194 return PexEnvironment(
195 path=pex_environment_aware.path,
196 interpreter_search_paths=python_bootstrap.interpreter_search_paths,
197 subprocess_environment_dict=subprocess_env_vars.vars,
198 named_caches_dir=named_caches_dir.val,
199 bootstrap_python=python_binary,
200 venv_use_symlinks=pex_subsystem.venv_use_symlinks,
201 )
202
203
204 @dataclass(frozen=True)
205 class CompletePexEnvironment:
206 _pex_environment: PexEnvironment
207 pex_root: PurePath
208 _working_directory: PurePath | None
209 append_only_caches: FrozenDict[str, str]
210
211 @property
212 def interpreter_search_paths(self) -> tuple[str, ...]:
213 return self._pex_environment.interpreter_search_paths
214
215 def create_argv(self, pex_filepath: str, *args: str) -> tuple[str, ...]:
216 pex_relpath = (
217 os.path.relpath(pex_filepath, self._working_directory)
218 if self._working_directory
219 else pex_filepath
220 )
221 return (self._pex_environment.bootstrap_python.path, pex_relpath, *args)
222
223 def environment_dict(
224 self, *, python: PythonExecutable | PythonBuildStandaloneBinary | None = None
225 ) -> Mapping[str, str]:
226 """The environment to use for running anything with PEX.
227
228 If the Process is run with a pre-selected Python interpreter, set `python_configured=True`
229 to avoid PEX from trying to find a new interpreter.
230 """
231 path = os.pathsep.join(self._pex_environment.path)
232 subprocess_env_dict = dict(self._pex_environment.subprocess_environment_dict)
233
234 if "PATH" in self._pex_environment.subprocess_environment_dict:
235 path = os.pathsep.join([path, subprocess_env_dict.pop("PATH")])
236
237 d = dict(
238 PATH=path,
239 PEX_IGNORE_RCFILES="true",
240 PEX_ROOT=(
241 os.path.relpath(self.pex_root, self._working_directory)
242 if self._working_directory
243 else str(self.pex_root)
244 ),
245 **subprocess_env_dict,
246 )
247 if python:
248 d["PEX_PYTHON"] = python.path
249 else:
250 d["PEX_PYTHON_PATH"] = os.pathsep.join(self.interpreter_search_paths)
251 return d
252
253
254 def rules():
255 return [
256 *collect_rules(),
257 *subprocess_environment.rules(),
258 *system_binaries.rules(),
259 ]
260
[end of src/python/pants/backend/python/util_rules/pex_environment.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/src/python/pants/backend/python/util_rules/pex_environment.py b/src/python/pants/backend/python/util_rules/pex_environment.py
--- a/src/python/pants/backend/python/util_rules/pex_environment.py
+++ b/src/python/pants/backend/python/util_rules/pex_environment.py
@@ -89,8 +89,8 @@
Note: Pants uses Pex internally in some ways that trigger some warnings at the moment,
so enabling this may result in warnings not related to your code. See
- <https://github.com/pantsbuild/pants/issues/20577> and
- <https://github.com/pantsbuild/pants/issues/20586>.
+ [#20577](https://github.com/pantsbuild/pants/issues/20577) and
+ [#20586](https://github.com/pantsbuild/pants/issues/20586).
"""
),
)
| {"golden_diff": "diff --git a/src/python/pants/backend/python/util_rules/pex_environment.py b/src/python/pants/backend/python/util_rules/pex_environment.py\n--- a/src/python/pants/backend/python/util_rules/pex_environment.py\n+++ b/src/python/pants/backend/python/util_rules/pex_environment.py\n@@ -89,8 +89,8 @@\n \n Note: Pants uses Pex internally in some ways that trigger some warnings at the moment,\n so enabling this may result in warnings not related to your code. See\n- <https://github.com/pantsbuild/pants/issues/20577> and\n- <https://github.com/pantsbuild/pants/issues/20586>.\n+ [#20577](https://github.com/pantsbuild/pants/issues/20577) and\n+ [#20586](https://github.com/pantsbuild/pants/issues/20586).\n \"\"\"\n ),\n )\n", "issue": "`[pex].emit_warnings` docs show `>` literally instead of `>`\n**Describe the bug**\r\n\r\nhttps://www.pantsbuild.org/2.20/reference/subsystems/pex#emit_warnings\r\n\r\n\r\n\r\n\r\n**Pants version**\r\n2.20\r\n\r\n**OS**\r\nN/A\r\n\r\n**Additional info**\r\n\n", "before_files": [{"content": "# Copyright 2019 Pants project contributors (see CONTRIBUTORS.md).\n# Licensed under the Apache License, Version 2.0 (see LICENSE).\n\nfrom __future__ import annotations\n\nimport os\nfrom dataclasses import dataclass\nfrom pathlib import PurePath\nfrom typing import Mapping\n\nfrom pants.core.subsystems.python_bootstrap import PythonBootstrap\nfrom pants.core.util_rules import subprocess_environment, system_binaries\nfrom pants.core.util_rules.adhoc_binaries import PythonBuildStandaloneBinary\nfrom pants.core.util_rules.subprocess_environment import SubprocessEnvironmentVars\nfrom pants.core.util_rules.system_binaries import BinaryPath\nfrom pants.engine.engine_aware import EngineAwareReturnType\nfrom pants.engine.rules import collect_rules, rule\nfrom pants.option.global_options import NamedCachesDirOption\nfrom pants.option.option_types import BoolOption, IntOption, StrListOption\nfrom pants.option.subsystem import Subsystem\nfrom pants.util.frozendict import FrozenDict\nfrom pants.util.logging import LogLevel\nfrom pants.util.memo import memoized_property\nfrom pants.util.ordered_set import OrderedSet\nfrom pants.util.strutil import softwrap\n\n\nclass PexSubsystem(Subsystem):\n options_scope = \"pex\"\n help = \"How Pants uses Pex to run Python subprocesses.\"\n\n class EnvironmentAware(Subsystem.EnvironmentAware):\n # TODO(#9760): We'll want to deprecate this in favor of a global option which allows for a\n # per-process override.\n\n env_vars_used_by_options = (\"PATH\",)\n\n _executable_search_paths = StrListOption(\n default=[\"<PATH>\"],\n help=softwrap(\n \"\"\"\n The PATH value that will be used by the PEX subprocess and any subprocesses it\n spawns.\n\n The special string `\"<PATH>\"` will expand to the contents of the PATH env var.\n \"\"\"\n ),\n advanced=True,\n metavar=\"<binary-paths>\",\n )\n\n @memoized_property\n def path(self) -> tuple[str, ...]:\n def iter_path_entries():\n for entry in self._executable_search_paths:\n if entry == \"<PATH>\":\n path = self._options_env.get(\"PATH\")\n if path:\n yield from path.split(os.pathsep)\n else:\n yield entry\n\n return tuple(OrderedSet(iter_path_entries()))\n\n _verbosity = IntOption(\n default=0,\n help=\"Set the verbosity level of PEX logging, from 0 (no logging) up to 9 (max logging).\",\n advanced=True,\n )\n venv_use_symlinks = BoolOption(\n default=False,\n help=softwrap(\n \"\"\"\n When possible, use venvs whose site-packages directories are populated with symlinks.\n\n Enabling this can save space in the `--named-caches-dir` directory\n and lead to slightly faster execution times for Pants Python goals. Some\n distributions do not work with symlinked venvs though, so you may not be able to\n enable this optimization as a result.\n \"\"\"\n ),\n advanced=True,\n )\n emit_warnings = BoolOption(\n default=False,\n help=softwrap(\n \"\"\"\n If warnings from Pex should be logged by Pants to the console.\n\n Note: Pants uses Pex internally in some ways that trigger some warnings at the moment,\n so enabling this may result in warnings not related to your code. See\n <https://github.com/pantsbuild/pants/issues/20577> and\n <https://github.com/pantsbuild/pants/issues/20586>.\n \"\"\"\n ),\n )\n\n @property\n def verbosity(self) -> int:\n level = self._verbosity\n if level < 0 or level > 9:\n raise ValueError(\"verbosity level must be between 0 and 9\")\n return level\n\n\n@dataclass(frozen=True)\nclass PythonExecutable(BinaryPath, EngineAwareReturnType):\n \"\"\"The BinaryPath of a Python executable for user code, along with some extras.\"\"\"\n\n append_only_caches: FrozenDict[str, str] = FrozenDict({})\n\n def __init__(\n self,\n path: str,\n fingerprint: str | None = None,\n append_only_caches: Mapping[str, str] = FrozenDict({}),\n ) -> None:\n object.__setattr__(self, \"append_only_caches\", FrozenDict(append_only_caches))\n super().__init__(path, fingerprint)\n self.__post_init__()\n\n def __post_init__(self) -> None:\n if not PurePath(self.path).is_absolute():\n raise ValueError(\n softwrap(\n f\"\"\"\n PythonExecutable expects the path to be absolute. Tools like Pex internalize the\n absolute path to Python (since `sys.executable` is expected to be absolute).\n\n In order to ensure the cache key for Python process is \"correct\" (especially in\n remote cache/execution situations) we require the Python path is absolute.\n\n Got: {self.path}\n \"\"\"\n )\n )\n\n def message(self) -> str:\n return f\"Selected {self.path} to run PEXes with.\"\n\n\n@dataclass(frozen=True)\nclass PexEnvironment:\n path: tuple[str, ...]\n interpreter_search_paths: tuple[str, ...]\n subprocess_environment_dict: FrozenDict[str, str]\n named_caches_dir: PurePath\n bootstrap_python: PythonBuildStandaloneBinary\n venv_use_symlinks: bool = False\n\n _PEX_ROOT_DIRNAME = \"pex_root\"\n\n def in_sandbox(self, *, working_directory: str | None) -> CompletePexEnvironment:\n pex_root = PurePath(\".cache\") / self._PEX_ROOT_DIRNAME\n return CompletePexEnvironment(\n _pex_environment=self,\n pex_root=pex_root,\n _working_directory=PurePath(working_directory) if working_directory else None,\n append_only_caches=FrozenDict(\n **{self._PEX_ROOT_DIRNAME: str(pex_root)},\n **self.bootstrap_python.APPEND_ONLY_CACHES,\n ),\n )\n\n def in_workspace(self) -> CompletePexEnvironment:\n # N.B.: When running in the workspace the engine doesn't offer an append_only_caches\n # service to setup a symlink to our named cache for us. As such, we point the PEX_ROOT\n # directly at the underlying append only cache in that case to re-use results there and\n # to keep the workspace from being dirtied by the creation of a new Pex cache rooted\n # there.\n pex_root = self.named_caches_dir / self._PEX_ROOT_DIRNAME\n return CompletePexEnvironment(\n _pex_environment=self,\n pex_root=pex_root,\n _working_directory=None,\n append_only_caches=self.bootstrap_python.APPEND_ONLY_CACHES,\n )\n\n def venv_site_packages_copies_option(self, use_copies: bool) -> str:\n if self.venv_use_symlinks and not use_copies:\n return \"--no-venv-site-packages-copies\"\n return \"--venv-site-packages-copies\"\n\n\n@rule(desc=\"Prepare environment for running PEXes\", level=LogLevel.DEBUG)\nasync def find_pex_python(\n python_bootstrap: PythonBootstrap,\n python_binary: PythonBuildStandaloneBinary,\n pex_subsystem: PexSubsystem,\n pex_environment_aware: PexSubsystem.EnvironmentAware,\n subprocess_env_vars: SubprocessEnvironmentVars,\n named_caches_dir: NamedCachesDirOption,\n) -> PexEnvironment:\n return PexEnvironment(\n path=pex_environment_aware.path,\n interpreter_search_paths=python_bootstrap.interpreter_search_paths,\n subprocess_environment_dict=subprocess_env_vars.vars,\n named_caches_dir=named_caches_dir.val,\n bootstrap_python=python_binary,\n venv_use_symlinks=pex_subsystem.venv_use_symlinks,\n )\n\n\n@dataclass(frozen=True)\nclass CompletePexEnvironment:\n _pex_environment: PexEnvironment\n pex_root: PurePath\n _working_directory: PurePath | None\n append_only_caches: FrozenDict[str, str]\n\n @property\n def interpreter_search_paths(self) -> tuple[str, ...]:\n return self._pex_environment.interpreter_search_paths\n\n def create_argv(self, pex_filepath: str, *args: str) -> tuple[str, ...]:\n pex_relpath = (\n os.path.relpath(pex_filepath, self._working_directory)\n if self._working_directory\n else pex_filepath\n )\n return (self._pex_environment.bootstrap_python.path, pex_relpath, *args)\n\n def environment_dict(\n self, *, python: PythonExecutable | PythonBuildStandaloneBinary | None = None\n ) -> Mapping[str, str]:\n \"\"\"The environment to use for running anything with PEX.\n\n If the Process is run with a pre-selected Python interpreter, set `python_configured=True`\n to avoid PEX from trying to find a new interpreter.\n \"\"\"\n path = os.pathsep.join(self._pex_environment.path)\n subprocess_env_dict = dict(self._pex_environment.subprocess_environment_dict)\n\n if \"PATH\" in self._pex_environment.subprocess_environment_dict:\n path = os.pathsep.join([path, subprocess_env_dict.pop(\"PATH\")])\n\n d = dict(\n PATH=path,\n PEX_IGNORE_RCFILES=\"true\",\n PEX_ROOT=(\n os.path.relpath(self.pex_root, self._working_directory)\n if self._working_directory\n else str(self.pex_root)\n ),\n **subprocess_env_dict,\n )\n if python:\n d[\"PEX_PYTHON\"] = python.path\n else:\n d[\"PEX_PYTHON_PATH\"] = os.pathsep.join(self.interpreter_search_paths)\n return d\n\n\ndef rules():\n return [\n *collect_rules(),\n *subprocess_environment.rules(),\n *system_binaries.rules(),\n ]\n", "path": "src/python/pants/backend/python/util_rules/pex_environment.py"}]} | 3,499 | 210 |
gh_patches_debug_41134 | rasdani/github-patches | git_diff | catalyst-team__catalyst-565 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Make process-images case-insensitive to file types.
File: `contrib/scripts/process_images.py`
When processing a folder with `--extension=jpg`, `JPG` files will be ignored.
Would be nice to have a file type handler that converts the extension to the unique format, e.g. if a folder has mixed file extensions like 'jpg', 'JPG', 'JPEG', 'jpeg', we should be able to read them all using `--extension=jpg`.
</issue>
<code>
[start of catalyst/contrib/scripts/process_images.py]
1 #!/usr/bin/env python
2 # usage:
3 # catalyst-data process-images \
4 # --in-dir ./data_in \
5 # --out-dir ./data_out \
6 # --num-workers 4 \
7 # --max-size 224 \
8 # --clear-exif \
9 # --grayscale
10
11 import argparse
12 from functools import wraps
13 import os
14 from pathlib import Path
15
16 import cv2
17 import numpy as np
18
19 from catalyst.utils import (
20 boolean_flag, get_pool, imread, imwrite, Pool, tqdm_parallel_imap
21 )
22
23 # Limit cv2's processor usage
24 # cv2.setNumThreads() doesn't work
25 os.environ["OMP_NUM_THREADS"] = "1"
26 os.environ["MKL_NUM_THREADS"] = "1"
27 cv2.ocl.setUseOpenCL(False)
28
29
30 def build_args(parser):
31 parser.add_argument(
32 "--in-dir",
33 required=True,
34 type=Path,
35 help="Raw data folder path")
36
37 parser.add_argument(
38 "--out-dir",
39 required=True,
40 type=Path,
41 help="Processed images folder path")
42
43 parser.add_argument(
44 "--num-workers", "-j",
45 default=1,
46 type=int,
47 help="Number of workers to parallel the processing")
48
49 parser.add_argument(
50 "--extension",
51 default="jpg",
52 type=str,
53 help="Input images extension. JPG is default.")
54
55 parser.add_argument(
56 "--max-size",
57 default=None,
58 required=False,
59 type=int,
60 help="Output images size. E.g. 224, 448")
61
62 boolean_flag(
63 parser,
64 "clear-exif",
65 default=True,
66 help="Clear EXIF data")
67
68 boolean_flag(
69 parser,
70 "grayscale",
71 default=False,
72 help="Read images in grayscale")
73
74 boolean_flag(
75 parser,
76 "expand-dims",
77 default=True,
78 help="Expand array shape for grayscale images")
79
80 return parser
81
82
83 def parse_args():
84 parser = argparse.ArgumentParser()
85 build_args(parser)
86 args = parser.parse_args()
87 return args
88
89
90 # <--- taken from albumentations - https://github.com/albu/albumentations --->
91
92 def py3round(number):
93 """Unified rounding in all python versions."""
94 if abs(round(number) - number) == 0.5:
95 return int(2.0 * round(number / 2.0))
96
97 return int(round(number))
98
99
100 def preserve_channel_dim(func):
101 """Preserve dummy channel dim."""
102 @wraps(func)
103 def wrapped_function(img, *args, **kwargs):
104 shape = img.shape
105 result = func(img, *args, **kwargs)
106 if len(shape) == 3 and shape[-1] == 1 and len(result.shape) == 2:
107 result = np.expand_dims(result, axis=-1)
108 return result
109
110 return wrapped_function
111
112
113 def _func_max_size(img, max_size, interpolation, func):
114 height, width = img.shape[:2]
115
116 scale = max_size / float(func(width, height))
117
118 if scale != 1.0:
119 out_size = tuple(py3round(dim * scale) for dim in (width, height))
120 img = cv2.resize(img, out_size, interpolation=interpolation)
121 return img
122
123
124 @preserve_channel_dim
125 def longest_max_size(img, max_size, interpolation):
126 return _func_max_size(img, max_size, interpolation, max)
127
128 # <--- taken from albumentations - https://github.com/albu/albumentations --->
129
130
131 class Preprocessor:
132 def __init__(
133 self,
134 in_dir: Path,
135 out_dir: Path,
136 max_size: int = None,
137 clear_exif: bool = True,
138 grayscale: bool = False,
139 expand_dims: bool = True,
140 extension: str = "jpg",
141 interpolation=cv2.INTER_LANCZOS4,
142 ):
143 self.in_dir = in_dir
144 self.out_dir = out_dir
145 self.grayscale = grayscale
146 self.expand_dims = expand_dims
147 self.max_size = max_size
148 self.clear_exif = clear_exif
149 self.extension = extension
150 self.interpolation = interpolation
151
152 def preprocess(self, image_path: Path):
153 try:
154 if self.extension in ("jpg", "JPG", "jpeg", "JPEG"):
155 image = np.array(
156 imread(
157 uri=image_path,
158 grayscale=self.grayscale,
159 expand_dims=self.expand_dims,
160 exifrotate=not self.clear_exif))
161 else: # imread does not have exifrotate for non-jpeg type
162 image = np.array(
163 imread(
164 uri=image_path,
165 grayscale=self.grayscale,
166 expand_dims=self.expand_dims))
167 except Exception as e:
168 print(f"Cannot read file {image_path}, exception: {e}")
169 return
170
171 if self.max_size is not None:
172 image = longest_max_size(image, self.max_size, self.interpolation)
173
174 target_path = self.out_dir / image_path.relative_to(self.in_dir)
175 target_path.parent.mkdir(parents=True, exist_ok=True)
176
177 image = image.clip(0, 255).round().astype(np.uint8)
178 imwrite(target_path, image)
179
180 def process_all(self, pool: Pool):
181 images = [*self.in_dir.glob(f"**/*.{self.extension}")]
182 tqdm_parallel_imap(self.preprocess, images, pool)
183
184
185 def main(args, _=None):
186 args = args.__dict__
187 args.pop("command", None)
188 num_workers = args.pop("num_workers")
189
190 with get_pool(num_workers) as p:
191 Preprocessor(**args).process_all(p)
192
193
194 if __name__ == "__main__":
195 args = parse_args()
196 main(args)
197
[end of catalyst/contrib/scripts/process_images.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/catalyst/contrib/scripts/process_images.py b/catalyst/contrib/scripts/process_images.py
--- a/catalyst/contrib/scripts/process_images.py
+++ b/catalyst/contrib/scripts/process_images.py
@@ -8,6 +8,7 @@
# --clear-exif \
# --grayscale
+from typing import List # isort:skip
import argparse
from functools import wraps
import os
@@ -17,7 +18,8 @@
import numpy as np
from catalyst.utils import (
- boolean_flag, get_pool, imread, imwrite, Pool, tqdm_parallel_imap
+ boolean_flag, get_pool, has_image_extension, imread, imwrite, Pool,
+ tqdm_parallel_imap
)
# Limit cv2's processor usage
@@ -46,12 +48,6 @@
type=int,
help="Number of workers to parallel the processing")
- parser.add_argument(
- "--extension",
- default="jpg",
- type=str,
- help="Input images extension. JPG is default.")
-
parser.add_argument(
"--max-size",
default=None,
@@ -137,7 +133,6 @@
clear_exif: bool = True,
grayscale: bool = False,
expand_dims: bool = True,
- extension: str = "jpg",
interpolation=cv2.INTER_LANCZOS4,
):
self.in_dir = in_dir
@@ -146,24 +141,19 @@
self.expand_dims = expand_dims
self.max_size = max_size
self.clear_exif = clear_exif
- self.extension = extension
self.interpolation = interpolation
def preprocess(self, image_path: Path):
try:
- if self.extension in ("jpg", "JPG", "jpeg", "JPEG"):
- image = np.array(
- imread(
- uri=image_path,
- grayscale=self.grayscale,
- expand_dims=self.expand_dims,
- exifrotate=not self.clear_exif))
- else: # imread does not have exifrotate for non-jpeg type
- image = np.array(
- imread(
- uri=image_path,
- grayscale=self.grayscale,
- expand_dims=self.expand_dims))
+ _, extension = os.path.splitext(image_path)
+ kwargs = {
+ "grayscale": self.grayscale, "expand_dims": self.expand_dims
+ }
+ if extension.lower() in {"jpg", "jpeg"}:
+ # imread does not have exifrotate for non-jpeg type
+ kwargs["exifrotate"] = not self.clear_exif
+
+ image = np.array(imread(uri=image_path, **kwargs))
except Exception as e:
print(f"Cannot read file {image_path}, exception: {e}")
return
@@ -178,7 +168,14 @@
imwrite(target_path, image)
def process_all(self, pool: Pool):
- images = [*self.in_dir.glob(f"**/*.{self.extension}")]
+ images: List[Path] = []
+ for root, dirs, files in os.walk(self.in_dir):
+ root = Path(root)
+ images.extend([
+ root / filename for filename in files
+ if has_image_extension(filename)
+ ])
+
tqdm_parallel_imap(self.preprocess, images, pool)
| {"golden_diff": "diff --git a/catalyst/contrib/scripts/process_images.py b/catalyst/contrib/scripts/process_images.py\n--- a/catalyst/contrib/scripts/process_images.py\n+++ b/catalyst/contrib/scripts/process_images.py\n@@ -8,6 +8,7 @@\n # --clear-exif \\\n # --grayscale\n \n+from typing import List # isort:skip\n import argparse\n from functools import wraps\n import os\n@@ -17,7 +18,8 @@\n import numpy as np\n \n from catalyst.utils import (\n- boolean_flag, get_pool, imread, imwrite, Pool, tqdm_parallel_imap\n+ boolean_flag, get_pool, has_image_extension, imread, imwrite, Pool,\n+ tqdm_parallel_imap\n )\n \n # Limit cv2's processor usage\n@@ -46,12 +48,6 @@\n type=int,\n help=\"Number of workers to parallel the processing\")\n \n- parser.add_argument(\n- \"--extension\",\n- default=\"jpg\",\n- type=str,\n- help=\"Input images extension. JPG is default.\")\n-\n parser.add_argument(\n \"--max-size\",\n default=None,\n@@ -137,7 +133,6 @@\n clear_exif: bool = True,\n grayscale: bool = False,\n expand_dims: bool = True,\n- extension: str = \"jpg\",\n interpolation=cv2.INTER_LANCZOS4,\n ):\n self.in_dir = in_dir\n@@ -146,24 +141,19 @@\n self.expand_dims = expand_dims\n self.max_size = max_size\n self.clear_exif = clear_exif\n- self.extension = extension\n self.interpolation = interpolation\n \n def preprocess(self, image_path: Path):\n try:\n- if self.extension in (\"jpg\", \"JPG\", \"jpeg\", \"JPEG\"):\n- image = np.array(\n- imread(\n- uri=image_path,\n- grayscale=self.grayscale,\n- expand_dims=self.expand_dims,\n- exifrotate=not self.clear_exif))\n- else: # imread does not have exifrotate for non-jpeg type\n- image = np.array(\n- imread(\n- uri=image_path,\n- grayscale=self.grayscale,\n- expand_dims=self.expand_dims))\n+ _, extension = os.path.splitext(image_path)\n+ kwargs = {\n+ \"grayscale\": self.grayscale, \"expand_dims\": self.expand_dims\n+ }\n+ if extension.lower() in {\"jpg\", \"jpeg\"}:\n+ # imread does not have exifrotate for non-jpeg type\n+ kwargs[\"exifrotate\"] = not self.clear_exif\n+\n+ image = np.array(imread(uri=image_path, **kwargs))\n except Exception as e:\n print(f\"Cannot read file {image_path}, exception: {e}\")\n return\n@@ -178,7 +168,14 @@\n imwrite(target_path, image)\n \n def process_all(self, pool: Pool):\n- images = [*self.in_dir.glob(f\"**/*.{self.extension}\")]\n+ images: List[Path] = []\n+ for root, dirs, files in os.walk(self.in_dir):\n+ root = Path(root)\n+ images.extend([\n+ root / filename for filename in files\n+ if has_image_extension(filename)\n+ ])\n+\n tqdm_parallel_imap(self.preprocess, images, pool)\n", "issue": "Make process-images case-insensitive to file types.\nFile: `contrib/scripts/process_images.py`\r\nWhen processing a folder with `--extension=jpg`, `JPG` files will be ignored.\r\n\r\nWould be nice to have a file type handler that converts the extension to the unique format, e.g. if a folder has mixed file extensions like 'jpg', 'JPG', 'JPEG', 'jpeg', we should be able to read them all using `--extension=jpg`. \n", "before_files": [{"content": "#!/usr/bin/env python\n# usage:\n# catalyst-data process-images \\\n# --in-dir ./data_in \\\n# --out-dir ./data_out \\\n# --num-workers 4 \\\n# --max-size 224 \\\n# --clear-exif \\\n# --grayscale\n\nimport argparse\nfrom functools import wraps\nimport os\nfrom pathlib import Path\n\nimport cv2\nimport numpy as np\n\nfrom catalyst.utils import (\n boolean_flag, get_pool, imread, imwrite, Pool, tqdm_parallel_imap\n)\n\n# Limit cv2's processor usage\n# cv2.setNumThreads() doesn't work\nos.environ[\"OMP_NUM_THREADS\"] = \"1\"\nos.environ[\"MKL_NUM_THREADS\"] = \"1\"\ncv2.ocl.setUseOpenCL(False)\n\n\ndef build_args(parser):\n parser.add_argument(\n \"--in-dir\",\n required=True,\n type=Path,\n help=\"Raw data folder path\")\n\n parser.add_argument(\n \"--out-dir\",\n required=True,\n type=Path,\n help=\"Processed images folder path\")\n\n parser.add_argument(\n \"--num-workers\", \"-j\",\n default=1,\n type=int,\n help=\"Number of workers to parallel the processing\")\n\n parser.add_argument(\n \"--extension\",\n default=\"jpg\",\n type=str,\n help=\"Input images extension. JPG is default.\")\n\n parser.add_argument(\n \"--max-size\",\n default=None,\n required=False,\n type=int,\n help=\"Output images size. E.g. 224, 448\")\n\n boolean_flag(\n parser,\n \"clear-exif\",\n default=True,\n help=\"Clear EXIF data\")\n\n boolean_flag(\n parser,\n \"grayscale\",\n default=False,\n help=\"Read images in grayscale\")\n\n boolean_flag(\n parser,\n \"expand-dims\",\n default=True,\n help=\"Expand array shape for grayscale images\")\n\n return parser\n\n\ndef parse_args():\n parser = argparse.ArgumentParser()\n build_args(parser)\n args = parser.parse_args()\n return args\n\n\n# <--- taken from albumentations - https://github.com/albu/albumentations --->\n\ndef py3round(number):\n \"\"\"Unified rounding in all python versions.\"\"\"\n if abs(round(number) - number) == 0.5:\n return int(2.0 * round(number / 2.0))\n\n return int(round(number))\n\n\ndef preserve_channel_dim(func):\n \"\"\"Preserve dummy channel dim.\"\"\"\n @wraps(func)\n def wrapped_function(img, *args, **kwargs):\n shape = img.shape\n result = func(img, *args, **kwargs)\n if len(shape) == 3 and shape[-1] == 1 and len(result.shape) == 2:\n result = np.expand_dims(result, axis=-1)\n return result\n\n return wrapped_function\n\n\ndef _func_max_size(img, max_size, interpolation, func):\n height, width = img.shape[:2]\n\n scale = max_size / float(func(width, height))\n\n if scale != 1.0:\n out_size = tuple(py3round(dim * scale) for dim in (width, height))\n img = cv2.resize(img, out_size, interpolation=interpolation)\n return img\n\n\n@preserve_channel_dim\ndef longest_max_size(img, max_size, interpolation):\n return _func_max_size(img, max_size, interpolation, max)\n\n# <--- taken from albumentations - https://github.com/albu/albumentations --->\n\n\nclass Preprocessor:\n def __init__(\n self,\n in_dir: Path,\n out_dir: Path,\n max_size: int = None,\n clear_exif: bool = True,\n grayscale: bool = False,\n expand_dims: bool = True,\n extension: str = \"jpg\",\n interpolation=cv2.INTER_LANCZOS4,\n ):\n self.in_dir = in_dir\n self.out_dir = out_dir\n self.grayscale = grayscale\n self.expand_dims = expand_dims\n self.max_size = max_size\n self.clear_exif = clear_exif\n self.extension = extension\n self.interpolation = interpolation\n\n def preprocess(self, image_path: Path):\n try:\n if self.extension in (\"jpg\", \"JPG\", \"jpeg\", \"JPEG\"):\n image = np.array(\n imread(\n uri=image_path,\n grayscale=self.grayscale,\n expand_dims=self.expand_dims,\n exifrotate=not self.clear_exif))\n else: # imread does not have exifrotate for non-jpeg type\n image = np.array(\n imread(\n uri=image_path,\n grayscale=self.grayscale,\n expand_dims=self.expand_dims))\n except Exception as e:\n print(f\"Cannot read file {image_path}, exception: {e}\")\n return\n\n if self.max_size is not None:\n image = longest_max_size(image, self.max_size, self.interpolation)\n\n target_path = self.out_dir / image_path.relative_to(self.in_dir)\n target_path.parent.mkdir(parents=True, exist_ok=True)\n\n image = image.clip(0, 255).round().astype(np.uint8)\n imwrite(target_path, image)\n\n def process_all(self, pool: Pool):\n images = [*self.in_dir.glob(f\"**/*.{self.extension}\")]\n tqdm_parallel_imap(self.preprocess, images, pool)\n\n\ndef main(args, _=None):\n args = args.__dict__\n args.pop(\"command\", None)\n num_workers = args.pop(\"num_workers\")\n\n with get_pool(num_workers) as p:\n Preprocessor(**args).process_all(p)\n\n\nif __name__ == \"__main__\":\n args = parse_args()\n main(args)\n", "path": "catalyst/contrib/scripts/process_images.py"}]} | 2,373 | 747 |
gh_patches_debug_38031 | rasdani/github-patches | git_diff | Kinto__kinto-778 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Crash in history with DELETE /buckets
```
ERROR "DELETE /v1/buckets" ? (? ms) 'bucket_id' agent=node-fetch/1.0 (+https://github.com/bitinn/node-fetch) authn_type=basicauth collection_id=bucket collection_timestamp=1471536086687 errno=None exception=Traceback (most recent call last):
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/tweens.py", line 22, in excview_tween
response = handler(request)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py", line 101, in tm_tween
reraise(*exc_info)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py", line 90, in tm_tween
manager.commit()
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_manager.py", line 111, in commit
return self.get().commit()
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py", line 265, in commit
self._callBeforeCommitHooks()
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py", line 337, in _callBeforeCommitHooks
hook(*args, **kws)
File "/home/mathieu/Code/Mozilla/kinto/kinto/core/events.py", line 76, in _notify_resource_events_before
request.registry.notify(event)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/registry.py", line 91, in notify
[ _ for _ in self.subscribers(events, None) ]
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/registry.py", line 328, in subscribers
return self.adapters.subscribers(objects, provided)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/adapter.py", line 596, in subscribers
subscription(*objects)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py", line 130, in subscriber_wrapper
return derived_subscriber(*arg)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py", line 103, in derived_subscriber
return subscriber(arg[0])
File "/home/mathieu/Code/Mozilla/kinto/kinto/plugins/history/listener.py", line 16, in on_resource_changed
bucket_id = payload.pop('bucket_id')
KeyError: 'bucket_id' lang=None uid=a9d81e1b56f2b77103e87601621a99b3d82a15abf7c72ce57a032d0964317c7a
```
Crash in history with DELETE /buckets
```
ERROR "DELETE /v1/buckets" ? (? ms) 'bucket_id' agent=node-fetch/1.0 (+https://github.com/bitinn/node-fetch) authn_type=basicauth collection_id=bucket collection_timestamp=1471536086687 errno=None exception=Traceback (most recent call last):
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/tweens.py", line 22, in excview_tween
response = handler(request)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py", line 101, in tm_tween
reraise(*exc_info)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py", line 90, in tm_tween
manager.commit()
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_manager.py", line 111, in commit
return self.get().commit()
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py", line 265, in commit
self._callBeforeCommitHooks()
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py", line 337, in _callBeforeCommitHooks
hook(*args, **kws)
File "/home/mathieu/Code/Mozilla/kinto/kinto/core/events.py", line 76, in _notify_resource_events_before
request.registry.notify(event)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/registry.py", line 91, in notify
[ _ for _ in self.subscribers(events, None) ]
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/registry.py", line 328, in subscribers
return self.adapters.subscribers(objects, provided)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/adapter.py", line 596, in subscribers
subscription(*objects)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py", line 130, in subscriber_wrapper
return derived_subscriber(*arg)
File "/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py", line 103, in derived_subscriber
return subscriber(arg[0])
File "/home/mathieu/Code/Mozilla/kinto/kinto/plugins/history/listener.py", line 16, in on_resource_changed
bucket_id = payload.pop('bucket_id')
KeyError: 'bucket_id' lang=None uid=a9d81e1b56f2b77103e87601621a99b3d82a15abf7c72ce57a032d0964317c7a
```
</issue>
<code>
[start of kinto/plugins/history/listener.py]
1 from kinto.core.utils import instance_uri
2 import copy
3 from datetime import datetime
4
5
6 def on_resource_changed(event):
7 """
8 Everytime an object is created/changed/deleted, we create an entry in the
9 ``history`` resource. The entries are served as read-only in the
10 :mod:`kinto.plugins.history.views` module.
11 """
12 payload = copy.deepcopy(event.payload)
13 resource_name = payload['resource_name']
14 event_uri = payload['uri']
15
16 bucket_id = payload.pop('bucket_id')
17 bucket_uri = instance_uri(event.request, 'bucket', id=bucket_id)
18 collection_id = None
19 collection_uri = None
20 if 'collection_id' in payload:
21 collection_id = payload['collection_id']
22 collection_uri = instance_uri(event.request,
23 'collection',
24 bucket_id=bucket_id,
25 id=collection_id)
26
27 storage = event.request.registry.storage
28 permission = event.request.registry.permission
29
30 targets = []
31 for impacted in event.impacted_records:
32 # On POST .../records, the URI does not contain the newly created
33 # record id.
34 target = impacted['new']
35 obj_id = target['id']
36 parts = event_uri.split('/')
37 if resource_name in parts[-1]:
38 parts.append(obj_id)
39 else:
40 # Make sure the id is correct on grouped events.
41 parts[-1] = obj_id
42 uri = '/'.join(parts)
43 targets.append((uri, target))
44
45 # Prepare a list of object ids to be fetched from permission backend,
46 # and fetch them all at once. Use a mapping for later convenience.
47 all_perms_objects_ids = [oid for (oid, _) in targets]
48 all_perms_objects_ids.append(bucket_uri)
49 if collection_uri is not None:
50 all_perms_objects_ids.append(collection_uri)
51 all_perms_objects_ids = list(set(all_perms_objects_ids))
52 all_permissions = permission.get_objects_permissions(all_perms_objects_ids)
53 perms_by_object_id = dict(zip(all_perms_objects_ids, all_permissions))
54
55 bucket_perms = perms_by_object_id[bucket_uri]
56 collection_perms = {}
57 if collection_uri is not None:
58 collection_perms = perms_by_object_id[collection_uri]
59
60 # The principals allowed to read the bucket and collection.
61 # (Note: ``write`` means ``read``)
62 read_principals = set(bucket_perms.get('read', []))
63 read_principals.update(bucket_perms.get('write', []))
64 read_principals.update(collection_perms.get('read', []))
65 read_principals.update(collection_perms.get('write', []))
66
67 # Create a history entry for each impacted record.
68 for (uri, target) in targets:
69 obj_id = target['id']
70 # Prepare the history entry attributes.
71 perms = {k: list(v) for k, v in perms_by_object_id[uri].items()}
72 eventattrs = dict(**payload)
73 eventattrs.setdefault('%s_id' % resource_name, obj_id)
74 eventattrs['uri'] = uri
75 attrs = dict(date=datetime.now().isoformat(),
76 target={'data': target, 'permissions': perms},
77 **eventattrs)
78
79 # Create a record for the 'history' resource, whose parent_id is
80 # the bucket URI (c.f. views.py).
81 # Note: this will be rolledback if the transaction is rolledback.
82 entry = storage.create(parent_id=bucket_uri,
83 collection_id='history',
84 record=attrs)
85
86 # The read permission on the newly created history entry is the union
87 # of the record permissions with the one from bucket and collection.
88 entry_principals = set(read_principals)
89 entry_principals.update(perms.get('read', []))
90 entry_principals.update(perms.get('write', []))
91 entry_perms = {'read': list(entry_principals)}
92 # /buckets/{id}/history is the URI for the list of history entries.
93 entry_perm_id = '/buckets/%s/history/%s' % (bucket_id, entry['id'])
94 permission.replace_object_permissions(entry_perm_id, entry_perms)
95
[end of kinto/plugins/history/listener.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/kinto/plugins/history/listener.py b/kinto/plugins/history/listener.py
--- a/kinto/plugins/history/listener.py
+++ b/kinto/plugins/history/listener.py
@@ -1,5 +1,4 @@
from kinto.core.utils import instance_uri
-import copy
from datetime import datetime
@@ -9,30 +8,38 @@
``history`` resource. The entries are served as read-only in the
:mod:`kinto.plugins.history.views` module.
"""
- payload = copy.deepcopy(event.payload)
+ payload = event.payload
resource_name = payload['resource_name']
event_uri = payload['uri']
- bucket_id = payload.pop('bucket_id')
- bucket_uri = instance_uri(event.request, 'bucket', id=bucket_id)
- collection_id = None
+ bucket_id = None
+ bucket_uri = None
collection_uri = None
- if 'collection_id' in payload:
- collection_id = payload['collection_id']
- collection_uri = instance_uri(event.request,
- 'collection',
- bucket_id=bucket_id,
- id=collection_id)
storage = event.request.registry.storage
permission = event.request.registry.permission
targets = []
for impacted in event.impacted_records:
- # On POST .../records, the URI does not contain the newly created
- # record id.
target = impacted['new']
obj_id = target['id']
+
+ try:
+ bucket_id = payload['bucket_id']
+ except KeyError:
+ # e.g. DELETE /buckets
+ bucket_id = obj_id
+ bucket_uri = instance_uri(event.request, 'bucket', id=bucket_id)
+
+ if 'collection_id' in payload:
+ collection_id = payload['collection_id']
+ collection_uri = instance_uri(event.request,
+ 'collection',
+ bucket_id=bucket_id,
+ id=collection_id)
+
+ # On POST .../records, the URI does not contain the newly created
+ # record id.
parts = event_uri.split('/')
if resource_name in parts[-1]:
parts.append(obj_id)
@@ -70,6 +77,7 @@
# Prepare the history entry attributes.
perms = {k: list(v) for k, v in perms_by_object_id[uri].items()}
eventattrs = dict(**payload)
+ eventattrs.pop('bucket_id', None)
eventattrs.setdefault('%s_id' % resource_name, obj_id)
eventattrs['uri'] = uri
attrs = dict(date=datetime.now().isoformat(),
| {"golden_diff": "diff --git a/kinto/plugins/history/listener.py b/kinto/plugins/history/listener.py\n--- a/kinto/plugins/history/listener.py\n+++ b/kinto/plugins/history/listener.py\n@@ -1,5 +1,4 @@\n from kinto.core.utils import instance_uri\n-import copy\n from datetime import datetime\n \n \n@@ -9,30 +8,38 @@\n ``history`` resource. The entries are served as read-only in the\n :mod:`kinto.plugins.history.views` module.\n \"\"\"\n- payload = copy.deepcopy(event.payload)\n+ payload = event.payload\n resource_name = payload['resource_name']\n event_uri = payload['uri']\n \n- bucket_id = payload.pop('bucket_id')\n- bucket_uri = instance_uri(event.request, 'bucket', id=bucket_id)\n- collection_id = None\n+ bucket_id = None\n+ bucket_uri = None\n collection_uri = None\n- if 'collection_id' in payload:\n- collection_id = payload['collection_id']\n- collection_uri = instance_uri(event.request,\n- 'collection',\n- bucket_id=bucket_id,\n- id=collection_id)\n \n storage = event.request.registry.storage\n permission = event.request.registry.permission\n \n targets = []\n for impacted in event.impacted_records:\n- # On POST .../records, the URI does not contain the newly created\n- # record id.\n target = impacted['new']\n obj_id = target['id']\n+\n+ try:\n+ bucket_id = payload['bucket_id']\n+ except KeyError:\n+ # e.g. DELETE /buckets\n+ bucket_id = obj_id\n+ bucket_uri = instance_uri(event.request, 'bucket', id=bucket_id)\n+\n+ if 'collection_id' in payload:\n+ collection_id = payload['collection_id']\n+ collection_uri = instance_uri(event.request,\n+ 'collection',\n+ bucket_id=bucket_id,\n+ id=collection_id)\n+\n+ # On POST .../records, the URI does not contain the newly created\n+ # record id.\n parts = event_uri.split('/')\n if resource_name in parts[-1]:\n parts.append(obj_id)\n@@ -70,6 +77,7 @@\n # Prepare the history entry attributes.\n perms = {k: list(v) for k, v in perms_by_object_id[uri].items()}\n eventattrs = dict(**payload)\n+ eventattrs.pop('bucket_id', None)\n eventattrs.setdefault('%s_id' % resource_name, obj_id)\n eventattrs['uri'] = uri\n attrs = dict(date=datetime.now().isoformat(),\n", "issue": "Crash in history with DELETE /buckets\n```\nERROR \"DELETE /v1/buckets\" ? (? ms) 'bucket_id' agent=node-fetch/1.0 (+https://github.com/bitinn/node-fetch) authn_type=basicauth collection_id=bucket collection_timestamp=1471536086687 errno=None exception=Traceback (most recent call last):\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/tweens.py\", line 22, in excview_tween\n response = handler(request)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py\", line 101, in tm_tween\n reraise(*exc_info)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py\", line 90, in tm_tween\n manager.commit()\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_manager.py\", line 111, in commit\n return self.get().commit()\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py\", line 265, in commit\n self._callBeforeCommitHooks()\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py\", line 337, in _callBeforeCommitHooks\n hook(*args, **kws)\n File \"/home/mathieu/Code/Mozilla/kinto/kinto/core/events.py\", line 76, in _notify_resource_events_before\n request.registry.notify(event)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/registry.py\", line 91, in notify\n [ _ for _ in self.subscribers(events, None) ]\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/registry.py\", line 328, in subscribers\n return self.adapters.subscribers(objects, provided)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/adapter.py\", line 596, in subscribers\n subscription(*objects)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py\", line 130, in subscriber_wrapper\n return derived_subscriber(*arg)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py\", line 103, in derived_subscriber\n return subscriber(arg[0])\n File \"/home/mathieu/Code/Mozilla/kinto/kinto/plugins/history/listener.py\", line 16, in on_resource_changed\n bucket_id = payload.pop('bucket_id')\nKeyError: 'bucket_id' lang=None uid=a9d81e1b56f2b77103e87601621a99b3d82a15abf7c72ce57a032d0964317c7a\n```\n\nCrash in history with DELETE /buckets\n```\nERROR \"DELETE /v1/buckets\" ? (? ms) 'bucket_id' agent=node-fetch/1.0 (+https://github.com/bitinn/node-fetch) authn_type=basicauth collection_id=bucket collection_timestamp=1471536086687 errno=None exception=Traceback (most recent call last):\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/tweens.py\", line 22, in excview_tween\n response = handler(request)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py\", line 101, in tm_tween\n reraise(*exc_info)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid_tm/__init__.py\", line 90, in tm_tween\n manager.commit()\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_manager.py\", line 111, in commit\n return self.get().commit()\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py\", line 265, in commit\n self._callBeforeCommitHooks()\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/transaction/_transaction.py\", line 337, in _callBeforeCommitHooks\n hook(*args, **kws)\n File \"/home/mathieu/Code/Mozilla/kinto/kinto/core/events.py\", line 76, in _notify_resource_events_before\n request.registry.notify(event)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/registry.py\", line 91, in notify\n [ _ for _ in self.subscribers(events, None) ]\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/registry.py\", line 328, in subscribers\n return self.adapters.subscribers(objects, provided)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/zope/interface/adapter.py\", line 596, in subscribers\n subscription(*objects)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py\", line 130, in subscriber_wrapper\n return derived_subscriber(*arg)\n File \"/home/mathieu/Code/Mozilla/kinto-client/.venv/local/lib/python2.7/site-packages/pyramid/config/adapters.py\", line 103, in derived_subscriber\n return subscriber(arg[0])\n File \"/home/mathieu/Code/Mozilla/kinto/kinto/plugins/history/listener.py\", line 16, in on_resource_changed\n bucket_id = payload.pop('bucket_id')\nKeyError: 'bucket_id' lang=None uid=a9d81e1b56f2b77103e87601621a99b3d82a15abf7c72ce57a032d0964317c7a\n```\n\n", "before_files": [{"content": "from kinto.core.utils import instance_uri\nimport copy\nfrom datetime import datetime\n\n\ndef on_resource_changed(event):\n \"\"\"\n Everytime an object is created/changed/deleted, we create an entry in the\n ``history`` resource. The entries are served as read-only in the\n :mod:`kinto.plugins.history.views` module.\n \"\"\"\n payload = copy.deepcopy(event.payload)\n resource_name = payload['resource_name']\n event_uri = payload['uri']\n\n bucket_id = payload.pop('bucket_id')\n bucket_uri = instance_uri(event.request, 'bucket', id=bucket_id)\n collection_id = None\n collection_uri = None\n if 'collection_id' in payload:\n collection_id = payload['collection_id']\n collection_uri = instance_uri(event.request,\n 'collection',\n bucket_id=bucket_id,\n id=collection_id)\n\n storage = event.request.registry.storage\n permission = event.request.registry.permission\n\n targets = []\n for impacted in event.impacted_records:\n # On POST .../records, the URI does not contain the newly created\n # record id.\n target = impacted['new']\n obj_id = target['id']\n parts = event_uri.split('/')\n if resource_name in parts[-1]:\n parts.append(obj_id)\n else:\n # Make sure the id is correct on grouped events.\n parts[-1] = obj_id\n uri = '/'.join(parts)\n targets.append((uri, target))\n\n # Prepare a list of object ids to be fetched from permission backend,\n # and fetch them all at once. Use a mapping for later convenience.\n all_perms_objects_ids = [oid for (oid, _) in targets]\n all_perms_objects_ids.append(bucket_uri)\n if collection_uri is not None:\n all_perms_objects_ids.append(collection_uri)\n all_perms_objects_ids = list(set(all_perms_objects_ids))\n all_permissions = permission.get_objects_permissions(all_perms_objects_ids)\n perms_by_object_id = dict(zip(all_perms_objects_ids, all_permissions))\n\n bucket_perms = perms_by_object_id[bucket_uri]\n collection_perms = {}\n if collection_uri is not None:\n collection_perms = perms_by_object_id[collection_uri]\n\n # The principals allowed to read the bucket and collection.\n # (Note: ``write`` means ``read``)\n read_principals = set(bucket_perms.get('read', []))\n read_principals.update(bucket_perms.get('write', []))\n read_principals.update(collection_perms.get('read', []))\n read_principals.update(collection_perms.get('write', []))\n\n # Create a history entry for each impacted record.\n for (uri, target) in targets:\n obj_id = target['id']\n # Prepare the history entry attributes.\n perms = {k: list(v) for k, v in perms_by_object_id[uri].items()}\n eventattrs = dict(**payload)\n eventattrs.setdefault('%s_id' % resource_name, obj_id)\n eventattrs['uri'] = uri\n attrs = dict(date=datetime.now().isoformat(),\n target={'data': target, 'permissions': perms},\n **eventattrs)\n\n # Create a record for the 'history' resource, whose parent_id is\n # the bucket URI (c.f. views.py).\n # Note: this will be rolledback if the transaction is rolledback.\n entry = storage.create(parent_id=bucket_uri,\n collection_id='history',\n record=attrs)\n\n # The read permission on the newly created history entry is the union\n # of the record permissions with the one from bucket and collection.\n entry_principals = set(read_principals)\n entry_principals.update(perms.get('read', []))\n entry_principals.update(perms.get('write', []))\n entry_perms = {'read': list(entry_principals)}\n # /buckets/{id}/history is the URI for the list of history entries.\n entry_perm_id = '/buckets/%s/history/%s' % (bucket_id, entry['id'])\n permission.replace_object_permissions(entry_perm_id, entry_perms)\n", "path": "kinto/plugins/history/listener.py"}]} | 3,138 | 570 |
gh_patches_debug_36316 | rasdani/github-patches | git_diff | microsoft__playwright-python-1107 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
internal: setup env variables when launching driver
1.18 driver assumes the following environment variables are set:
```
PW_CLI_TARGET_LANG=python
PW_CLI_TARGET_LANG_VERSION=<version>
PW_CLI_DISPLAY_VERSION=CLI_VERSION (of the language)
```
`version` should not be too granular to avoid noise; IMO major + minor seems to be good for Python.
</issue>
<code>
[start of playwright/_impl/_transport.py]
1 # Copyright (c) Microsoft Corporation.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14
15 import asyncio
16 import io
17 import json
18 import os
19 import subprocess
20 import sys
21 from abc import ABC, abstractmethod
22 from pathlib import Path
23 from typing import Callable, Dict, Optional, Union
24
25 import websockets
26 import websockets.exceptions
27 from pyee import AsyncIOEventEmitter
28 from websockets.client import connect as websocket_connect
29
30 from playwright._impl._api_types import Error
31 from playwright._impl._helper import ParsedMessagePayload
32
33
34 # Sourced from: https://github.com/pytest-dev/pytest/blob/da01ee0a4bb0af780167ecd228ab3ad249511302/src/_pytest/faulthandler.py#L69-L77
35 def _get_stderr_fileno() -> Optional[int]:
36 if sys.stderr.closed:
37 return None
38
39 try:
40 return sys.stderr.fileno()
41 except (AttributeError, io.UnsupportedOperation):
42 # pytest-xdist monkeypatches sys.stderr with an object that is not an actual file.
43 # https://docs.python.org/3/library/faulthandler.html#issue-with-file-descriptors
44 # This is potentially dangerous, but the best we can do.
45 if not hasattr(sys, "__stderr__") or not sys.__stderr__:
46 return None
47 return sys.__stderr__.fileno()
48
49
50 class Transport(ABC):
51 def __init__(self, loop: asyncio.AbstractEventLoop) -> None:
52 self._loop = loop
53 self.on_message: Callable[[ParsedMessagePayload], None] = lambda _: None
54 self.on_error_future: asyncio.Future = loop.create_future()
55
56 @abstractmethod
57 def request_stop(self) -> None:
58 pass
59
60 def dispose(self) -> None:
61 pass
62
63 @abstractmethod
64 async def wait_until_stopped(self) -> None:
65 pass
66
67 @abstractmethod
68 async def connect(self) -> None:
69 pass
70
71 @abstractmethod
72 async def run(self) -> None:
73 pass
74
75 @abstractmethod
76 def send(self, message: Dict) -> None:
77 pass
78
79 def serialize_message(self, message: Dict) -> bytes:
80 msg = json.dumps(message)
81 if "DEBUGP" in os.environ: # pragma: no cover
82 print("\x1b[32mSEND>\x1b[0m", json.dumps(message, indent=2))
83 return msg.encode()
84
85 def deserialize_message(self, data: Union[str, bytes]) -> ParsedMessagePayload:
86 obj = json.loads(data)
87
88 if "DEBUGP" in os.environ: # pragma: no cover
89 print("\x1b[33mRECV>\x1b[0m", json.dumps(obj, indent=2))
90 return obj
91
92
93 class PipeTransport(Transport):
94 def __init__(
95 self, loop: asyncio.AbstractEventLoop, driver_executable: Path
96 ) -> None:
97 super().__init__(loop)
98 self._stopped = False
99 self._driver_executable = driver_executable
100
101 def request_stop(self) -> None:
102 assert self._output
103 self._stopped = True
104 self._output.close()
105
106 async def wait_until_stopped(self) -> None:
107 await self._stopped_future
108 await self._proc.wait()
109
110 async def connect(self) -> None:
111 self._stopped_future: asyncio.Future = asyncio.Future()
112 # Hide the command-line window on Windows when using Pythonw.exe
113 creationflags = 0
114 if sys.platform == "win32" and sys.stdout is None:
115 creationflags = subprocess.CREATE_NO_WINDOW
116
117 try:
118 # For pyinstaller
119 env = os.environ.copy()
120 if getattr(sys, "frozen", False):
121 env.setdefault("PLAYWRIGHT_BROWSERS_PATH", "0")
122
123 self._proc = await asyncio.create_subprocess_exec(
124 str(self._driver_executable),
125 "run-driver",
126 stdin=asyncio.subprocess.PIPE,
127 stdout=asyncio.subprocess.PIPE,
128 stderr=_get_stderr_fileno(),
129 limit=32768,
130 creationflags=creationflags,
131 env=env,
132 )
133 except Exception as exc:
134 self.on_error_future.set_exception(exc)
135 raise exc
136
137 self._output = self._proc.stdin
138
139 async def run(self) -> None:
140 assert self._proc.stdout
141 assert self._proc.stdin
142 while not self._stopped:
143 try:
144 buffer = await self._proc.stdout.readexactly(4)
145 length = int.from_bytes(buffer, byteorder="little", signed=False)
146 buffer = bytes(0)
147 while length:
148 to_read = min(length, 32768)
149 data = await self._proc.stdout.readexactly(to_read)
150 length -= to_read
151 if len(buffer):
152 buffer = buffer + data
153 else:
154 buffer = data
155
156 obj = self.deserialize_message(buffer)
157 self.on_message(obj)
158 except asyncio.IncompleteReadError:
159 break
160 await asyncio.sleep(0)
161 self._stopped_future.set_result(None)
162
163 def send(self, message: Dict) -> None:
164 assert self._output
165 data = self.serialize_message(message)
166 self._output.write(
167 len(data).to_bytes(4, byteorder="little", signed=False) + data
168 )
169
170
171 class WebSocketTransport(AsyncIOEventEmitter, Transport):
172 def __init__(
173 self,
174 loop: asyncio.AbstractEventLoop,
175 ws_endpoint: str,
176 headers: Dict[str, str] = None,
177 slow_mo: float = None,
178 ) -> None:
179 super().__init__(loop)
180 Transport.__init__(self, loop)
181
182 self._stopped = False
183 self.ws_endpoint = ws_endpoint
184 self.headers = headers
185 self.slow_mo = slow_mo
186
187 def request_stop(self) -> None:
188 self._stopped = True
189 self.emit("close")
190 self._loop.create_task(self._connection.close())
191
192 def dispose(self) -> None:
193 self.on_error_future.cancel()
194
195 async def wait_until_stopped(self) -> None:
196 await self._connection.wait_closed()
197
198 async def connect(self) -> None:
199 try:
200 self._connection = await websocket_connect(
201 self.ws_endpoint, extra_headers=self.headers
202 )
203 except Exception as exc:
204 self.on_error_future.set_exception(Error(f"websocket.connect: {str(exc)}"))
205 raise exc
206
207 async def run(self) -> None:
208 while not self._stopped:
209 try:
210 message = await self._connection.recv()
211 if self.slow_mo is not None:
212 await asyncio.sleep(self.slow_mo / 1000)
213 if self._stopped:
214 self.on_error_future.set_exception(
215 Error("Playwright connection closed")
216 )
217 break
218 obj = self.deserialize_message(message)
219 self.on_message(obj)
220 except (
221 websockets.exceptions.ConnectionClosed,
222 websockets.exceptions.ConnectionClosedError,
223 ):
224 if not self._stopped:
225 self.emit("close")
226 self.on_error_future.set_exception(
227 Error("Playwright connection closed")
228 )
229 break
230 except Exception as exc:
231 self.on_error_future.set_exception(exc)
232 break
233
234 def send(self, message: Dict) -> None:
235 if self._stopped or (hasattr(self, "_connection") and self._connection.closed):
236 raise Error("Playwright connection closed")
237 data = self.serialize_message(message)
238 self._loop.create_task(self._connection.send(data))
239
[end of playwright/_impl/_transport.py]
[start of playwright/_impl/_driver.py]
1 # Copyright (c) Microsoft Corporation.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14
15 import asyncio
16 import inspect
17 import sys
18 from pathlib import Path
19
20 import playwright
21
22
23 def compute_driver_executable() -> Path:
24 package_path = Path(inspect.getfile(playwright)).parent
25 platform = sys.platform
26 if platform == "win32":
27 return package_path / "driver" / "playwright.cmd"
28 return package_path / "driver" / "playwright.sh"
29
30
31 if sys.version_info.major == 3 and sys.version_info.minor == 7:
32 if sys.platform == "win32":
33 # Use ProactorEventLoop in 3.7, which is default in 3.8
34 asyncio.set_event_loop_policy(asyncio.WindowsProactorEventLoopPolicy())
35 else:
36 # Prevent Python 3.7 from throwing on Linux:
37 # RuntimeError: Cannot add child handler, the child watcher does not have a loop attached
38 asyncio.get_event_loop()
39 try:
40 asyncio.get_child_watcher()
41 except Exception:
42 # uvloop does not support child watcher
43 # see https://github.com/microsoft/playwright-python/issues/582
44 pass
45
[end of playwright/_impl/_driver.py]
[start of playwright/__main__.py]
1 # Copyright (c) Microsoft Corporation.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14
15 import os
16 import subprocess
17 import sys
18
19 from playwright._impl._driver import compute_driver_executable
20 from playwright._repo_version import version
21
22
23 def main() -> None:
24 driver_executable = compute_driver_executable()
25 env = os.environ.copy()
26 env["PW_CLI_TARGET_LANG"] = "python"
27 env["PW_CLI_DISPLAY_VERSION"] = version
28 completed_process = subprocess.run([str(driver_executable), *sys.argv[1:]], env=env)
29 sys.exit(completed_process.returncode)
30
31
32 if __name__ == "__main__":
33 main()
34
[end of playwright/__main__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/playwright/__main__.py b/playwright/__main__.py
--- a/playwright/__main__.py
+++ b/playwright/__main__.py
@@ -12,20 +12,17 @@
# See the License for the specific language governing permissions and
# limitations under the License.
-import os
import subprocess
import sys
-from playwright._impl._driver import compute_driver_executable
-from playwright._repo_version import version
+from playwright._impl._driver import compute_driver_executable, get_driver_env
def main() -> None:
driver_executable = compute_driver_executable()
- env = os.environ.copy()
- env["PW_CLI_TARGET_LANG"] = "python"
- env["PW_CLI_DISPLAY_VERSION"] = version
- completed_process = subprocess.run([str(driver_executable), *sys.argv[1:]], env=env)
+ completed_process = subprocess.run(
+ [str(driver_executable), *sys.argv[1:]], env=get_driver_env()
+ )
sys.exit(completed_process.returncode)
diff --git a/playwright/_impl/_driver.py b/playwright/_impl/_driver.py
--- a/playwright/_impl/_driver.py
+++ b/playwright/_impl/_driver.py
@@ -14,10 +14,12 @@
import asyncio
import inspect
+import os
import sys
from pathlib import Path
import playwright
+from playwright._repo_version import version
def compute_driver_executable() -> Path:
@@ -42,3 +44,13 @@
# uvloop does not support child watcher
# see https://github.com/microsoft/playwright-python/issues/582
pass
+
+
+def get_driver_env() -> dict:
+ env = os.environ.copy()
+ env["PW_CLI_TARGET_LANG"] = "python"
+ env[
+ "PW_CLI_TARGET_LANG_VERSION"
+ ] = f"{sys.version_info.major}.{sys.version_info.minor}"
+ env["PW_CLI_DISPLAY_VERSION"] = version
+ return env
diff --git a/playwright/_impl/_transport.py b/playwright/_impl/_transport.py
--- a/playwright/_impl/_transport.py
+++ b/playwright/_impl/_transport.py
@@ -28,6 +28,7 @@
from websockets.client import connect as websocket_connect
from playwright._impl._api_types import Error
+from playwright._impl._driver import get_driver_env
from playwright._impl._helper import ParsedMessagePayload
@@ -116,7 +117,7 @@
try:
# For pyinstaller
- env = os.environ.copy()
+ env = get_driver_env()
if getattr(sys, "frozen", False):
env.setdefault("PLAYWRIGHT_BROWSERS_PATH", "0")
| {"golden_diff": "diff --git a/playwright/__main__.py b/playwright/__main__.py\n--- a/playwright/__main__.py\n+++ b/playwright/__main__.py\n@@ -12,20 +12,17 @@\n # See the License for the specific language governing permissions and\n # limitations under the License.\n \n-import os\n import subprocess\n import sys\n \n-from playwright._impl._driver import compute_driver_executable\n-from playwright._repo_version import version\n+from playwright._impl._driver import compute_driver_executable, get_driver_env\n \n \n def main() -> None:\n driver_executable = compute_driver_executable()\n- env = os.environ.copy()\n- env[\"PW_CLI_TARGET_LANG\"] = \"python\"\n- env[\"PW_CLI_DISPLAY_VERSION\"] = version\n- completed_process = subprocess.run([str(driver_executable), *sys.argv[1:]], env=env)\n+ completed_process = subprocess.run(\n+ [str(driver_executable), *sys.argv[1:]], env=get_driver_env()\n+ )\n sys.exit(completed_process.returncode)\n \n \ndiff --git a/playwright/_impl/_driver.py b/playwright/_impl/_driver.py\n--- a/playwright/_impl/_driver.py\n+++ b/playwright/_impl/_driver.py\n@@ -14,10 +14,12 @@\n \n import asyncio\n import inspect\n+import os\n import sys\n from pathlib import Path\n \n import playwright\n+from playwright._repo_version import version\n \n \n def compute_driver_executable() -> Path:\n@@ -42,3 +44,13 @@\n # uvloop does not support child watcher\n # see https://github.com/microsoft/playwright-python/issues/582\n pass\n+\n+\n+def get_driver_env() -> dict:\n+ env = os.environ.copy()\n+ env[\"PW_CLI_TARGET_LANG\"] = \"python\"\n+ env[\n+ \"PW_CLI_TARGET_LANG_VERSION\"\n+ ] = f\"{sys.version_info.major}.{sys.version_info.minor}\"\n+ env[\"PW_CLI_DISPLAY_VERSION\"] = version\n+ return env\ndiff --git a/playwright/_impl/_transport.py b/playwright/_impl/_transport.py\n--- a/playwright/_impl/_transport.py\n+++ b/playwright/_impl/_transport.py\n@@ -28,6 +28,7 @@\n from websockets.client import connect as websocket_connect\n \n from playwright._impl._api_types import Error\n+from playwright._impl._driver import get_driver_env\n from playwright._impl._helper import ParsedMessagePayload\n \n \n@@ -116,7 +117,7 @@\n \n try:\n # For pyinstaller\n- env = os.environ.copy()\n+ env = get_driver_env()\n if getattr(sys, \"frozen\", False):\n env.setdefault(\"PLAYWRIGHT_BROWSERS_PATH\", \"0\")\n", "issue": "internal: setup env variables when launching driver\n1.18 driver assumes the following environment variables are set:\r\n\r\n```\r\nPW_CLI_TARGET_LANG=python\r\nPW_CLI_TARGET_LANG_VERSION=<version>\r\nPW_CLI_DISPLAY_VERSION=CLI_VERSION (of the language)\r\n```\r\n\r\n`version` should not be too granular to avoid noise; IMO major + minor seems to be good for Python.\n", "before_files": [{"content": "# Copyright (c) Microsoft Corporation.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport asyncio\nimport io\nimport json\nimport os\nimport subprocess\nimport sys\nfrom abc import ABC, abstractmethod\nfrom pathlib import Path\nfrom typing import Callable, Dict, Optional, Union\n\nimport websockets\nimport websockets.exceptions\nfrom pyee import AsyncIOEventEmitter\nfrom websockets.client import connect as websocket_connect\n\nfrom playwright._impl._api_types import Error\nfrom playwright._impl._helper import ParsedMessagePayload\n\n\n# Sourced from: https://github.com/pytest-dev/pytest/blob/da01ee0a4bb0af780167ecd228ab3ad249511302/src/_pytest/faulthandler.py#L69-L77\ndef _get_stderr_fileno() -> Optional[int]:\n if sys.stderr.closed:\n return None\n\n try:\n return sys.stderr.fileno()\n except (AttributeError, io.UnsupportedOperation):\n # pytest-xdist monkeypatches sys.stderr with an object that is not an actual file.\n # https://docs.python.org/3/library/faulthandler.html#issue-with-file-descriptors\n # This is potentially dangerous, but the best we can do.\n if not hasattr(sys, \"__stderr__\") or not sys.__stderr__:\n return None\n return sys.__stderr__.fileno()\n\n\nclass Transport(ABC):\n def __init__(self, loop: asyncio.AbstractEventLoop) -> None:\n self._loop = loop\n self.on_message: Callable[[ParsedMessagePayload], None] = lambda _: None\n self.on_error_future: asyncio.Future = loop.create_future()\n\n @abstractmethod\n def request_stop(self) -> None:\n pass\n\n def dispose(self) -> None:\n pass\n\n @abstractmethod\n async def wait_until_stopped(self) -> None:\n pass\n\n @abstractmethod\n async def connect(self) -> None:\n pass\n\n @abstractmethod\n async def run(self) -> None:\n pass\n\n @abstractmethod\n def send(self, message: Dict) -> None:\n pass\n\n def serialize_message(self, message: Dict) -> bytes:\n msg = json.dumps(message)\n if \"DEBUGP\" in os.environ: # pragma: no cover\n print(\"\\x1b[32mSEND>\\x1b[0m\", json.dumps(message, indent=2))\n return msg.encode()\n\n def deserialize_message(self, data: Union[str, bytes]) -> ParsedMessagePayload:\n obj = json.loads(data)\n\n if \"DEBUGP\" in os.environ: # pragma: no cover\n print(\"\\x1b[33mRECV>\\x1b[0m\", json.dumps(obj, indent=2))\n return obj\n\n\nclass PipeTransport(Transport):\n def __init__(\n self, loop: asyncio.AbstractEventLoop, driver_executable: Path\n ) -> None:\n super().__init__(loop)\n self._stopped = False\n self._driver_executable = driver_executable\n\n def request_stop(self) -> None:\n assert self._output\n self._stopped = True\n self._output.close()\n\n async def wait_until_stopped(self) -> None:\n await self._stopped_future\n await self._proc.wait()\n\n async def connect(self) -> None:\n self._stopped_future: asyncio.Future = asyncio.Future()\n # Hide the command-line window on Windows when using Pythonw.exe\n creationflags = 0\n if sys.platform == \"win32\" and sys.stdout is None:\n creationflags = subprocess.CREATE_NO_WINDOW\n\n try:\n # For pyinstaller\n env = os.environ.copy()\n if getattr(sys, \"frozen\", False):\n env.setdefault(\"PLAYWRIGHT_BROWSERS_PATH\", \"0\")\n\n self._proc = await asyncio.create_subprocess_exec(\n str(self._driver_executable),\n \"run-driver\",\n stdin=asyncio.subprocess.PIPE,\n stdout=asyncio.subprocess.PIPE,\n stderr=_get_stderr_fileno(),\n limit=32768,\n creationflags=creationflags,\n env=env,\n )\n except Exception as exc:\n self.on_error_future.set_exception(exc)\n raise exc\n\n self._output = self._proc.stdin\n\n async def run(self) -> None:\n assert self._proc.stdout\n assert self._proc.stdin\n while not self._stopped:\n try:\n buffer = await self._proc.stdout.readexactly(4)\n length = int.from_bytes(buffer, byteorder=\"little\", signed=False)\n buffer = bytes(0)\n while length:\n to_read = min(length, 32768)\n data = await self._proc.stdout.readexactly(to_read)\n length -= to_read\n if len(buffer):\n buffer = buffer + data\n else:\n buffer = data\n\n obj = self.deserialize_message(buffer)\n self.on_message(obj)\n except asyncio.IncompleteReadError:\n break\n await asyncio.sleep(0)\n self._stopped_future.set_result(None)\n\n def send(self, message: Dict) -> None:\n assert self._output\n data = self.serialize_message(message)\n self._output.write(\n len(data).to_bytes(4, byteorder=\"little\", signed=False) + data\n )\n\n\nclass WebSocketTransport(AsyncIOEventEmitter, Transport):\n def __init__(\n self,\n loop: asyncio.AbstractEventLoop,\n ws_endpoint: str,\n headers: Dict[str, str] = None,\n slow_mo: float = None,\n ) -> None:\n super().__init__(loop)\n Transport.__init__(self, loop)\n\n self._stopped = False\n self.ws_endpoint = ws_endpoint\n self.headers = headers\n self.slow_mo = slow_mo\n\n def request_stop(self) -> None:\n self._stopped = True\n self.emit(\"close\")\n self._loop.create_task(self._connection.close())\n\n def dispose(self) -> None:\n self.on_error_future.cancel()\n\n async def wait_until_stopped(self) -> None:\n await self._connection.wait_closed()\n\n async def connect(self) -> None:\n try:\n self._connection = await websocket_connect(\n self.ws_endpoint, extra_headers=self.headers\n )\n except Exception as exc:\n self.on_error_future.set_exception(Error(f\"websocket.connect: {str(exc)}\"))\n raise exc\n\n async def run(self) -> None:\n while not self._stopped:\n try:\n message = await self._connection.recv()\n if self.slow_mo is not None:\n await asyncio.sleep(self.slow_mo / 1000)\n if self._stopped:\n self.on_error_future.set_exception(\n Error(\"Playwright connection closed\")\n )\n break\n obj = self.deserialize_message(message)\n self.on_message(obj)\n except (\n websockets.exceptions.ConnectionClosed,\n websockets.exceptions.ConnectionClosedError,\n ):\n if not self._stopped:\n self.emit(\"close\")\n self.on_error_future.set_exception(\n Error(\"Playwright connection closed\")\n )\n break\n except Exception as exc:\n self.on_error_future.set_exception(exc)\n break\n\n def send(self, message: Dict) -> None:\n if self._stopped or (hasattr(self, \"_connection\") and self._connection.closed):\n raise Error(\"Playwright connection closed\")\n data = self.serialize_message(message)\n self._loop.create_task(self._connection.send(data))\n", "path": "playwright/_impl/_transport.py"}, {"content": "# Copyright (c) Microsoft Corporation.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport asyncio\nimport inspect\nimport sys\nfrom pathlib import Path\n\nimport playwright\n\n\ndef compute_driver_executable() -> Path:\n package_path = Path(inspect.getfile(playwright)).parent\n platform = sys.platform\n if platform == \"win32\":\n return package_path / \"driver\" / \"playwright.cmd\"\n return package_path / \"driver\" / \"playwright.sh\"\n\n\nif sys.version_info.major == 3 and sys.version_info.minor == 7:\n if sys.platform == \"win32\":\n # Use ProactorEventLoop in 3.7, which is default in 3.8\n asyncio.set_event_loop_policy(asyncio.WindowsProactorEventLoopPolicy())\n else:\n # Prevent Python 3.7 from throwing on Linux:\n # RuntimeError: Cannot add child handler, the child watcher does not have a loop attached\n asyncio.get_event_loop()\n try:\n asyncio.get_child_watcher()\n except Exception:\n # uvloop does not support child watcher\n # see https://github.com/microsoft/playwright-python/issues/582\n pass\n", "path": "playwright/_impl/_driver.py"}, {"content": "# Copyright (c) Microsoft Corporation.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport os\nimport subprocess\nimport sys\n\nfrom playwright._impl._driver import compute_driver_executable\nfrom playwright._repo_version import version\n\n\ndef main() -> None:\n driver_executable = compute_driver_executable()\n env = os.environ.copy()\n env[\"PW_CLI_TARGET_LANG\"] = \"python\"\n env[\"PW_CLI_DISPLAY_VERSION\"] = version\n completed_process = subprocess.run([str(driver_executable), *sys.argv[1:]], env=env)\n sys.exit(completed_process.returncode)\n\n\nif __name__ == \"__main__\":\n main()\n", "path": "playwright/__main__.py"}]} | 3,770 | 611 |
gh_patches_debug_7727 | rasdani/github-patches | git_diff | bridgecrewio__checkov-5696 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Terraform check "CKV_AZURE_158" - Typo within the name
**Describe the issue**
It seems that there is a typo within the name of the check CKV_AZURE_158 for Terraform resources.
**Examples**
````python
from checkov.common.models.enums import CheckCategories, CheckResult
from checkov.terraform.checks.resource.base_resource_negative_value_check import BaseResourceNegativeValueCheck
from typing import List, Any
class DatabricksWorkspaceIsNotPublic(BaseResourceNegativeValueCheck):
def __init__(self):
name = "Ensure that databricks workspace has not public"
id = "CKV_AZURE_158"
supported_resources = ['azurerm_databricks_workspace']
categories = [CheckCategories.NETWORKING]
super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources,
missing_attribute_result=CheckResult.FAILED)
def get_inspected_key(self) -> str:
return 'public_network_access_enabled'
def get_forbidden_values(self) -> List[Any]:
return [True]
check = DatabricksWorkspaceIsNotPublic()
````
**Version (please complete the following information):**
Current
**Additional context**
N/A
</issue>
<code>
[start of checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py]
1 from checkov.common.models.enums import CheckCategories, CheckResult
2 from checkov.terraform.checks.resource.base_resource_negative_value_check import BaseResourceNegativeValueCheck
3 from typing import List, Any
4
5
6 class DatabricksWorkspaceIsNotPublic(BaseResourceNegativeValueCheck):
7 def __init__(self):
8 name = "Ensure that databricks workspace has not public"
9 id = "CKV_AZURE_158"
10 supported_resources = ['azurerm_databricks_workspace']
11 categories = [CheckCategories.NETWORKING]
12 super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources,
13 missing_attribute_result=CheckResult.FAILED)
14
15 def get_inspected_key(self) -> str:
16 return 'public_network_access_enabled'
17
18 def get_forbidden_values(self) -> List[Any]:
19 return [True]
20
21
22 check = DatabricksWorkspaceIsNotPublic()
23
[end of checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py b/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py
--- a/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py
+++ b/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py
@@ -5,7 +5,7 @@
class DatabricksWorkspaceIsNotPublic(BaseResourceNegativeValueCheck):
def __init__(self):
- name = "Ensure that databricks workspace has not public"
+ name = "Ensure that databricks workspace is not public"
id = "CKV_AZURE_158"
supported_resources = ['azurerm_databricks_workspace']
categories = [CheckCategories.NETWORKING]
| {"golden_diff": "diff --git a/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py b/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py\n--- a/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py\n+++ b/checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py\n@@ -5,7 +5,7 @@\n \n class DatabricksWorkspaceIsNotPublic(BaseResourceNegativeValueCheck):\n def __init__(self):\n- name = \"Ensure that databricks workspace has not public\"\n+ name = \"Ensure that databricks workspace is not public\"\n id = \"CKV_AZURE_158\"\n supported_resources = ['azurerm_databricks_workspace']\n categories = [CheckCategories.NETWORKING]\n", "issue": "Terraform check \"CKV_AZURE_158\" - Typo within the name\n**Describe the issue**\r\nIt seems that there is a typo within the name of the check CKV_AZURE_158 for Terraform resources.\r\n\r\n**Examples**\r\n````python\r\nfrom checkov.common.models.enums import CheckCategories, CheckResult\r\nfrom checkov.terraform.checks.resource.base_resource_negative_value_check import BaseResourceNegativeValueCheck\r\nfrom typing import List, Any\r\n\r\n\r\nclass DatabricksWorkspaceIsNotPublic(BaseResourceNegativeValueCheck):\r\n def __init__(self):\r\n name = \"Ensure that databricks workspace has not public\"\r\n id = \"CKV_AZURE_158\"\r\n supported_resources = ['azurerm_databricks_workspace']\r\n categories = [CheckCategories.NETWORKING]\r\n super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources,\r\n missing_attribute_result=CheckResult.FAILED)\r\n\r\n def get_inspected_key(self) -> str:\r\n return 'public_network_access_enabled'\r\n\r\n def get_forbidden_values(self) -> List[Any]:\r\n return [True]\r\n\r\n\r\ncheck = DatabricksWorkspaceIsNotPublic()\r\n````\r\n\r\n\r\n**Version (please complete the following information):**\r\n Current\r\n \r\n \r\n**Additional context**\r\nN/A\n", "before_files": [{"content": "from checkov.common.models.enums import CheckCategories, CheckResult\nfrom checkov.terraform.checks.resource.base_resource_negative_value_check import BaseResourceNegativeValueCheck\nfrom typing import List, Any\n\n\nclass DatabricksWorkspaceIsNotPublic(BaseResourceNegativeValueCheck):\n def __init__(self):\n name = \"Ensure that databricks workspace has not public\"\n id = \"CKV_AZURE_158\"\n supported_resources = ['azurerm_databricks_workspace']\n categories = [CheckCategories.NETWORKING]\n super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources,\n missing_attribute_result=CheckResult.FAILED)\n\n def get_inspected_key(self) -> str:\n return 'public_network_access_enabled'\n\n def get_forbidden_values(self) -> List[Any]:\n return [True]\n\n\ncheck = DatabricksWorkspaceIsNotPublic()\n", "path": "checkov/terraform/checks/resource/azure/DatabricksWorkspaceIsNotPublic.py"}]} | 1,065 | 177 |
gh_patches_debug_63151 | rasdani/github-patches | git_diff | frappe__frappe-7705 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Hard coded localhost for pgsql setup
The postgresql setup is using `localhost` instead of the `db_host` from the site configuration:
https://github.com/frappe/frappe/blob/17c43b4e1d2506e5b1498e52f3aa6c81277d67be/frappe/database/postgres/setup_db.py#L20
This makes it impossible to use Postgres on a remote host :/
I can try to provide a PR for that.
I do not guaranty I will have the time to test it but it's fairly simple.
</issue>
<code>
[start of frappe/database/postgres/setup_db.py]
1 import frappe, subprocess, os
2 from six.moves import input
3
4 def setup_database(force, source_sql, verbose):
5 root_conn = get_root_connection()
6 root_conn.commit()
7 root_conn.sql("DROP DATABASE IF EXISTS `{0}`".format(frappe.conf.db_name))
8 root_conn.sql("DROP USER IF EXISTS {0}".format(frappe.conf.db_name))
9 root_conn.sql("CREATE DATABASE `{0}`".format(frappe.conf.db_name))
10 root_conn.sql("CREATE user {0} password '{1}'".format(frappe.conf.db_name,
11 frappe.conf.db_password))
12 root_conn.sql("GRANT ALL PRIVILEGES ON DATABASE `{0}` TO {0}".format(frappe.conf.db_name))
13
14 # we can't pass psql password in arguments in postgresql as mysql. So
15 # set password connection parameter in environment variable
16 subprocess_env = os.environ.copy()
17 subprocess_env['PGPASSWORD'] = str(frappe.conf.db_password)
18 # bootstrap db
19 subprocess.check_output([
20 'psql', frappe.conf.db_name, '-h', 'localhost', '-U',
21 frappe.conf.db_name, '-f',
22 os.path.join(os.path.dirname(__file__), 'framework_postgres.sql')
23 ], env=subprocess_env)
24
25 frappe.connect()
26
27 def setup_help_database(help_db_name):
28 root_conn = get_root_connection()
29 root_conn.sql("DROP DATABASE IF EXISTS `{0}`".format(help_db_name))
30 root_conn.sql("DROP USER IF EXISTS {0}".format(help_db_name))
31 root_conn.sql("CREATE DATABASE `{0}`".format(help_db_name))
32 root_conn.sql("CREATE user {0} password '{1}'".format(help_db_name, help_db_name))
33 root_conn.sql("GRANT ALL PRIVILEGES ON DATABASE `{0}` TO {0}".format(help_db_name))
34
35 def get_root_connection(root_login=None, root_password=None):
36 import getpass
37 if not frappe.local.flags.root_connection:
38 if not root_login:
39 root_login = frappe.conf.get("root_login") or None
40
41 if not root_login:
42 root_login = input("Enter postgres super user: ")
43
44 if not root_password:
45 root_password = frappe.conf.get("root_password") or None
46
47 if not root_password:
48 root_password = getpass.getpass("Postgres super user password: ")
49
50 frappe.local.flags.root_connection = frappe.database.get_db(user=root_login, password=root_password)
51
52 return frappe.local.flags.root_connection
53
[end of frappe/database/postgres/setup_db.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/frappe/database/postgres/setup_db.py b/frappe/database/postgres/setup_db.py
--- a/frappe/database/postgres/setup_db.py
+++ b/frappe/database/postgres/setup_db.py
@@ -17,7 +17,7 @@
subprocess_env['PGPASSWORD'] = str(frappe.conf.db_password)
# bootstrap db
subprocess.check_output([
- 'psql', frappe.conf.db_name, '-h', 'localhost', '-U',
+ 'psql', frappe.conf.db_name, '-h', frappe.conf.db_host, '-U',
frappe.conf.db_name, '-f',
os.path.join(os.path.dirname(__file__), 'framework_postgres.sql')
], env=subprocess_env)
| {"golden_diff": "diff --git a/frappe/database/postgres/setup_db.py b/frappe/database/postgres/setup_db.py\n--- a/frappe/database/postgres/setup_db.py\n+++ b/frappe/database/postgres/setup_db.py\n@@ -17,7 +17,7 @@\n \tsubprocess_env['PGPASSWORD'] = str(frappe.conf.db_password)\n \t# bootstrap db\n \tsubprocess.check_output([\n-\t\t'psql', frappe.conf.db_name, '-h', 'localhost', '-U',\n+\t\t'psql', frappe.conf.db_name, '-h', frappe.conf.db_host, '-U',\n \t\tfrappe.conf.db_name, '-f',\n \t\tos.path.join(os.path.dirname(__file__), 'framework_postgres.sql')\n \t], env=subprocess_env)\n", "issue": "Hard coded localhost for pgsql setup\nThe postgresql setup is using `localhost` instead of the `db_host` from the site configuration:\r\nhttps://github.com/frappe/frappe/blob/17c43b4e1d2506e5b1498e52f3aa6c81277d67be/frappe/database/postgres/setup_db.py#L20\r\n\r\nThis makes it impossible to use Postgres on a remote host :/\r\n\r\nI can try to provide a PR for that.\r\nI do not guaranty I will have the time to test it but it's fairly simple.\n", "before_files": [{"content": "import frappe, subprocess, os\nfrom six.moves import input\n\ndef setup_database(force, source_sql, verbose):\n\troot_conn = get_root_connection()\n\troot_conn.commit()\n\troot_conn.sql(\"DROP DATABASE IF EXISTS `{0}`\".format(frappe.conf.db_name))\n\troot_conn.sql(\"DROP USER IF EXISTS {0}\".format(frappe.conf.db_name))\n\troot_conn.sql(\"CREATE DATABASE `{0}`\".format(frappe.conf.db_name))\n\troot_conn.sql(\"CREATE user {0} password '{1}'\".format(frappe.conf.db_name,\n\t\tfrappe.conf.db_password))\n\troot_conn.sql(\"GRANT ALL PRIVILEGES ON DATABASE `{0}` TO {0}\".format(frappe.conf.db_name))\n\n\t# we can't pass psql password in arguments in postgresql as mysql. So\n\t# set password connection parameter in environment variable\n\tsubprocess_env = os.environ.copy()\n\tsubprocess_env['PGPASSWORD'] = str(frappe.conf.db_password)\n\t# bootstrap db\n\tsubprocess.check_output([\n\t\t'psql', frappe.conf.db_name, '-h', 'localhost', '-U',\n\t\tfrappe.conf.db_name, '-f',\n\t\tos.path.join(os.path.dirname(__file__), 'framework_postgres.sql')\n\t], env=subprocess_env)\n\n\tfrappe.connect()\n\ndef setup_help_database(help_db_name):\n\troot_conn = get_root_connection()\n\troot_conn.sql(\"DROP DATABASE IF EXISTS `{0}`\".format(help_db_name))\n\troot_conn.sql(\"DROP USER IF EXISTS {0}\".format(help_db_name))\n\troot_conn.sql(\"CREATE DATABASE `{0}`\".format(help_db_name))\n\troot_conn.sql(\"CREATE user {0} password '{1}'\".format(help_db_name, help_db_name))\n\troot_conn.sql(\"GRANT ALL PRIVILEGES ON DATABASE `{0}` TO {0}\".format(help_db_name))\n\ndef get_root_connection(root_login=None, root_password=None):\n\timport getpass\n\tif not frappe.local.flags.root_connection:\n\t\tif not root_login:\n\t\t\troot_login = frappe.conf.get(\"root_login\") or None\n\n\t\tif not root_login:\n\t\t\troot_login = input(\"Enter postgres super user: \")\n\n\t\tif not root_password:\n\t\t\troot_password = frappe.conf.get(\"root_password\") or None\n\n\t\tif not root_password:\n\t\t\troot_password = getpass.getpass(\"Postgres super user password: \")\n\n\t\tfrappe.local.flags.root_connection = frappe.database.get_db(user=root_login, password=root_password)\n\n\treturn frappe.local.flags.root_connection\n", "path": "frappe/database/postgres/setup_db.py"}]} | 1,324 | 166 |
gh_patches_debug_6771 | rasdani/github-patches | git_diff | pyinstaller__pyinstaller-8040 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
TypeError: UpdateResource() takes no keyword arguments
引用了python 3.10.9·pyinstaller 6.1.0·imagehash 4.3.1·pyperclip 1.8.2和pyautogui 0.9.54模块，但是报错，打包的程序也用不了
</issue>
<code>
[start of PyInstaller/utils/win32/winresource.py]
1 #-----------------------------------------------------------------------------
2 # Copyright (c) 2013-2023, PyInstaller Development Team.
3 #
4 # Distributed under the terms of the GNU General Public License (version 2
5 # or later) with exception for distributing the bootloader.
6 #
7 # The full license is in the file COPYING.txt, distributed with this software.
8 #
9 # SPDX-License-Identifier: (GPL-2.0-or-later WITH Bootloader-exception)
10 #-----------------------------------------------------------------------------
11 """
12 Read and write resources from/to Win32 PE files.
13 """
14
15 import PyInstaller.log as logging
16 from PyInstaller.compat import pywintypes, win32api
17
18 logger = logging.getLogger(__name__)
19
20 LOAD_LIBRARY_AS_DATAFILE = 2
21 ERROR_BAD_EXE_FORMAT = 193
22 ERROR_RESOURCE_DATA_NOT_FOUND = 1812
23 ERROR_RESOURCE_TYPE_NOT_FOUND = 1813
24 ERROR_RESOURCE_NAME_NOT_FOUND = 1814
25 ERROR_RESOURCE_LANG_NOT_FOUND = 1815
26
27
28 def get_resources(filename, types=None, names=None, languages=None):
29 """
30 Retrieve resources from the given PE file.
31
32 filename: path to the PE file.
33 types: a list of resource types (integers or strings) to search for (None = all).
34 names: a list of resource names (integers or strings) to search for (None = all).
35 languages: a list of resource languages (integers) to search for (None = all).
36
37 Returns a dictionary of the form {type: {name: {language: data}}}, which might also be empty if no matching
38 resources were found.
39 """
40 types = set(types) if types is not None else {"*"}
41 names = set(names) if names is not None else {"*"}
42 languages = set(languages) if languages is not None else {"*"}
43
44 output = {}
45
46 # Errors codes for which we swallow exceptions
47 _IGNORE_EXCEPTIONS = {
48 ERROR_RESOURCE_DATA_NOT_FOUND,
49 ERROR_RESOURCE_TYPE_NOT_FOUND,
50 ERROR_RESOURCE_NAME_NOT_FOUND,
51 ERROR_RESOURCE_LANG_NOT_FOUND,
52 }
53
54 # Open file
55 module_handle = win32api.LoadLibraryEx(filename, 0, LOAD_LIBRARY_AS_DATAFILE)
56
57 # Enumerate available resource types
58 try:
59 available_types = win32api.EnumResourceTypes(module_handle)
60 except pywintypes.error as e:
61 if e.args[0] not in _IGNORE_EXCEPTIONS:
62 raise
63 available_types = []
64
65 if "*" not in types:
66 available_types = [res_type for res_type in available_types if res_type in types]
67
68 for res_type in available_types:
69 # Enumerate available names for the resource type.
70 try:
71 available_names = win32api.EnumResourceNames(module_handle, res_type)
72 except pywintypes.error as e:
73 if e.args[0] not in _IGNORE_EXCEPTIONS:
74 raise
75 continue
76
77 if "*" not in names:
78 available_names = [res_name for res_name in available_names if res_name in names]
79
80 for res_name in available_names:
81 # Enumerate available languages for the resource type and name combination.
82 try:
83 available_languages = win32api.EnumResourceLanguages(module_handle, res_type, res_name)
84 except pywintypes.error as e:
85 if e.args[0] not in _IGNORE_EXCEPTIONS:
86 raise
87 continue
88
89 if "*" not in languages:
90 available_languages = [res_lang for res_lang in available_languages if res_lang in languages]
91
92 for res_lang in available_languages:
93 # Read data
94 try:
95 data = win32api.LoadResource(module_handle, res_type, res_name, res_lang)
96 except pywintypes.error as e:
97 if e.args[0] not in _IGNORE_EXCEPTIONS:
98 raise
99 continue
100
101 if res_type not in output:
102 output[res_type] = {}
103 if res_name not in output[res_type]:
104 output[res_type][res_name] = {}
105 output[res_type][res_name][res_lang] = data
106
107 # Close file
108 win32api.FreeLibrary(module_handle)
109
110 return output
111
112
113 def add_or_update_resource(filename, data, res_type, names=None, languages=None):
114 """
115 Update or add a single resource in the PE file with the given binary data.
116
117 filename: path to the PE file.
118 data: binary data to write to the resource.
119 res_type: resource type to add/update (integer or string).
120 names: a list of resource names (integers or strings) to update (None = all).
121 languages: a list of resource languages (integers) to update (None = all).
122 """
123 if res_type == "*":
124 raise ValueError("res_type cannot be a wildcard (*)!")
125
126 names = set(names) if names is not None else {"*"}
127 languages = set(languages) if languages is not None else {"*"}
128
129 # Retrieve existing resources, filtered by the given resource type and given resource names and languages.
130 resources = get_resources(filename, [res_type], names, languages)
131
132 # Add res_type, name, language combinations that are not already present
133 resources = resources.get(res_type, {}) # This is now a {name: {language: data}} dictionary
134
135 for res_name in names:
136 if res_name == "*":
137 continue
138 if res_name not in resources:
139 resources[res_name] = {}
140
141 for res_lang in languages:
142 if res_lang == "*":
143 continue
144 if res_lang not in resources[res_name]:
145 resources[res_name][res_lang] = None # Just an indicator
146
147 # Add resource to the target file, overwriting the existing resources with same type, name, language combinations.
148 module_handle = win32api.BeginUpdateResource(filename, 0)
149 for res_name in resources.keys():
150 for res_lang in resources[res_name].keys():
151 win32api.UpdateResource(module_handle, res_type, res_name, data, language=res_lang)
152 win32api.EndUpdateResource(module_handle, 0)
153
154
155 def copy_resources_from_pe_file(filename, src_filename, types=None, names=None, languages=None):
156 """
157 Update or add resources in the given PE file by copying them over from the specified source PE file.
158
159 filename: path to the PE file.
160 src_filename: path to the source PE file.
161 types: a list of resource types (integers or strings) to add/update via copy for (None = all).
162 names: a list of resource names (integers or strings) to add/update via copy (None = all).
163 languages: a list of resource languages (integers) to add/update via copy (None = all).
164 """
165 types = set(types) if types is not None else {"*"}
166 names = set(names) if names is not None else {"*"}
167 languages = set(languages) if languages is not None else {"*"}
168
169 # Retrieve existing resources, filtered by the given resource type and given resource names and languages.
170 resources = get_resources(src_filename, types, names, languages)
171
172 for res_type, resources_for_type in resources.items():
173 if "*" not in types and res_type not in types:
174 continue
175 for res_name, resources_for_type_name in resources_for_type.items():
176 if "*" not in names and res_name not in names:
177 continue
178 for res_lang, data in resources_for_type_name.items():
179 if "*" not in languages and res_lang not in languages:
180 continue
181 add_or_update_resource(filename, data, res_type, [res_name], [res_lang])
182
183
184 def remove_all_resources(filename):
185 """
186 Remove all resources from the given PE file:
187 """
188 module_handle = win32api.BeginUpdateResource(filename, True) # bDeleteExistingResources=True
189 win32api.EndUpdateResource(module_handle, False)
190
[end of PyInstaller/utils/win32/winresource.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/PyInstaller/utils/win32/winresource.py b/PyInstaller/utils/win32/winresource.py
--- a/PyInstaller/utils/win32/winresource.py
+++ b/PyInstaller/utils/win32/winresource.py
@@ -148,7 +148,7 @@
module_handle = win32api.BeginUpdateResource(filename, 0)
for res_name in resources.keys():
for res_lang in resources[res_name].keys():
- win32api.UpdateResource(module_handle, res_type, res_name, data, language=res_lang)
+ win32api.UpdateResource(module_handle, res_type, res_name, data, res_lang)
win32api.EndUpdateResource(module_handle, 0)
| {"golden_diff": "diff --git a/PyInstaller/utils/win32/winresource.py b/PyInstaller/utils/win32/winresource.py\n--- a/PyInstaller/utils/win32/winresource.py\n+++ b/PyInstaller/utils/win32/winresource.py\n@@ -148,7 +148,7 @@\n module_handle = win32api.BeginUpdateResource(filename, 0)\n for res_name in resources.keys():\n for res_lang in resources[res_name].keys():\n- win32api.UpdateResource(module_handle, res_type, res_name, data, language=res_lang)\n+ win32api.UpdateResource(module_handle, res_type, res_name, data, res_lang)\n win32api.EndUpdateResource(module_handle, 0)\n", "issue": "TypeError: UpdateResource() takes no keyword arguments\n\u5f15\u7528\u4e86python 3.10.9\u00b7pyinstaller 6.1.0\u00b7imagehash 4.3.1\u00b7pyperclip 1.8.2\u548cpyautogui 0.9.54\u6a21\u5757\uff0c\u4f46\u662f\u62a5\u9519\uff0c\u6253\u5305\u7684\u7a0b\u5e8f\u4e5f\u7528\u4e0d\u4e86\n", "before_files": [{"content": "#-----------------------------------------------------------------------------\n# Copyright (c) 2013-2023, PyInstaller Development Team.\n#\n# Distributed under the terms of the GNU General Public License (version 2\n# or later) with exception for distributing the bootloader.\n#\n# The full license is in the file COPYING.txt, distributed with this software.\n#\n# SPDX-License-Identifier: (GPL-2.0-or-later WITH Bootloader-exception)\n#-----------------------------------------------------------------------------\n\"\"\"\nRead and write resources from/to Win32 PE files.\n\"\"\"\n\nimport PyInstaller.log as logging\nfrom PyInstaller.compat import pywintypes, win32api\n\nlogger = logging.getLogger(__name__)\n\nLOAD_LIBRARY_AS_DATAFILE = 2\nERROR_BAD_EXE_FORMAT = 193\nERROR_RESOURCE_DATA_NOT_FOUND = 1812\nERROR_RESOURCE_TYPE_NOT_FOUND = 1813\nERROR_RESOURCE_NAME_NOT_FOUND = 1814\nERROR_RESOURCE_LANG_NOT_FOUND = 1815\n\n\ndef get_resources(filename, types=None, names=None, languages=None):\n \"\"\"\n Retrieve resources from the given PE file.\n\n filename: path to the PE file.\n types: a list of resource types (integers or strings) to search for (None = all).\n names: a list of resource names (integers or strings) to search for (None = all).\n languages: a list of resource languages (integers) to search for (None = all).\n\n Returns a dictionary of the form {type: {name: {language: data}}}, which might also be empty if no matching\n resources were found.\n \"\"\"\n types = set(types) if types is not None else {\"*\"}\n names = set(names) if names is not None else {\"*\"}\n languages = set(languages) if languages is not None else {\"*\"}\n\n output = {}\n\n # Errors codes for which we swallow exceptions\n _IGNORE_EXCEPTIONS = {\n ERROR_RESOURCE_DATA_NOT_FOUND,\n ERROR_RESOURCE_TYPE_NOT_FOUND,\n ERROR_RESOURCE_NAME_NOT_FOUND,\n ERROR_RESOURCE_LANG_NOT_FOUND,\n }\n\n # Open file\n module_handle = win32api.LoadLibraryEx(filename, 0, LOAD_LIBRARY_AS_DATAFILE)\n\n # Enumerate available resource types\n try:\n available_types = win32api.EnumResourceTypes(module_handle)\n except pywintypes.error as e:\n if e.args[0] not in _IGNORE_EXCEPTIONS:\n raise\n available_types = []\n\n if \"*\" not in types:\n available_types = [res_type for res_type in available_types if res_type in types]\n\n for res_type in available_types:\n # Enumerate available names for the resource type.\n try:\n available_names = win32api.EnumResourceNames(module_handle, res_type)\n except pywintypes.error as e:\n if e.args[0] not in _IGNORE_EXCEPTIONS:\n raise\n continue\n\n if \"*\" not in names:\n available_names = [res_name for res_name in available_names if res_name in names]\n\n for res_name in available_names:\n # Enumerate available languages for the resource type and name combination.\n try:\n available_languages = win32api.EnumResourceLanguages(module_handle, res_type, res_name)\n except pywintypes.error as e:\n if e.args[0] not in _IGNORE_EXCEPTIONS:\n raise\n continue\n\n if \"*\" not in languages:\n available_languages = [res_lang for res_lang in available_languages if res_lang in languages]\n\n for res_lang in available_languages:\n # Read data\n try:\n data = win32api.LoadResource(module_handle, res_type, res_name, res_lang)\n except pywintypes.error as e:\n if e.args[0] not in _IGNORE_EXCEPTIONS:\n raise\n continue\n\n if res_type not in output:\n output[res_type] = {}\n if res_name not in output[res_type]:\n output[res_type][res_name] = {}\n output[res_type][res_name][res_lang] = data\n\n # Close file\n win32api.FreeLibrary(module_handle)\n\n return output\n\n\ndef add_or_update_resource(filename, data, res_type, names=None, languages=None):\n \"\"\"\n Update or add a single resource in the PE file with the given binary data.\n\n filename: path to the PE file.\n data: binary data to write to the resource.\n res_type: resource type to add/update (integer or string).\n names: a list of resource names (integers or strings) to update (None = all).\n languages: a list of resource languages (integers) to update (None = all).\n \"\"\"\n if res_type == \"*\":\n raise ValueError(\"res_type cannot be a wildcard (*)!\")\n\n names = set(names) if names is not None else {\"*\"}\n languages = set(languages) if languages is not None else {\"*\"}\n\n # Retrieve existing resources, filtered by the given resource type and given resource names and languages.\n resources = get_resources(filename, [res_type], names, languages)\n\n # Add res_type, name, language combinations that are not already present\n resources = resources.get(res_type, {}) # This is now a {name: {language: data}} dictionary\n\n for res_name in names:\n if res_name == \"*\":\n continue\n if res_name not in resources:\n resources[res_name] = {}\n\n for res_lang in languages:\n if res_lang == \"*\":\n continue\n if res_lang not in resources[res_name]:\n resources[res_name][res_lang] = None # Just an indicator\n\n # Add resource to the target file, overwriting the existing resources with same type, name, language combinations.\n module_handle = win32api.BeginUpdateResource(filename, 0)\n for res_name in resources.keys():\n for res_lang in resources[res_name].keys():\n win32api.UpdateResource(module_handle, res_type, res_name, data, language=res_lang)\n win32api.EndUpdateResource(module_handle, 0)\n\n\ndef copy_resources_from_pe_file(filename, src_filename, types=None, names=None, languages=None):\n \"\"\"\n Update or add resources in the given PE file by copying them over from the specified source PE file.\n\n filename: path to the PE file.\n src_filename: path to the source PE file.\n types: a list of resource types (integers or strings) to add/update via copy for (None = all).\n names: a list of resource names (integers or strings) to add/update via copy (None = all).\n languages: a list of resource languages (integers) to add/update via copy (None = all).\n \"\"\"\n types = set(types) if types is not None else {\"*\"}\n names = set(names) if names is not None else {\"*\"}\n languages = set(languages) if languages is not None else {\"*\"}\n\n # Retrieve existing resources, filtered by the given resource type and given resource names and languages.\n resources = get_resources(src_filename, types, names, languages)\n\n for res_type, resources_for_type in resources.items():\n if \"*\" not in types and res_type not in types:\n continue\n for res_name, resources_for_type_name in resources_for_type.items():\n if \"*\" not in names and res_name not in names:\n continue\n for res_lang, data in resources_for_type_name.items():\n if \"*\" not in languages and res_lang not in languages:\n continue\n add_or_update_resource(filename, data, res_type, [res_name], [res_lang])\n\n\ndef remove_all_resources(filename):\n \"\"\"\n Remove all resources from the given PE file:\n \"\"\"\n module_handle = win32api.BeginUpdateResource(filename, True) # bDeleteExistingResources=True\n win32api.EndUpdateResource(module_handle, False)\n", "path": "PyInstaller/utils/win32/winresource.py"}]} | 2,774 | 160 |
gh_patches_debug_1782 | rasdani/github-patches | git_diff | python__python-docs-es-1714 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Translate 'library/http.server.po'
This needs to reach 100% translated.
The rendered version of this file will be available at https://docs.python.org/es/3.10/library/http.server.html once translated.
Meanwhile, the English version is shown.
Current stats for `library/http.server.po`:
* Fuzzy: 4
* Percent translated: 97.8%
* Entries: 87 / 89
* Untranslated: 2
Please, comment here if you want this file to be assigned to you and an member will assign it to you as soon as possible, so you can start working on it.
Remember to follow the steps in our [Contributing Guide](https://python-docs-es.readthedocs.io/page/CONTRIBUTING.html).
</issue>
<code>
[start of scripts/translate.py]
1 import os
2 import re
3 import sys
4 from typing import Dict, Tuple
5
6 import polib
7
8 VERBOSE = False
9 DEBUG = False
10 SKIP_TRANSLATED_ENTRIES = True
11
12 try:
13 from deep_translator import GoogleTranslator
14 except ImportError:
15 print("Error: This util script needs `deep_translator` to be installed")
16 sys.exit(1)
17
18 _patterns = [
19 ":c:func:`[^`]+`",
20 ":c:type:`[^`]+`",
21 ":c:macro:`[^`]+`",
22 ":c:member:`[^`]+`",
23 ":c:data:`[^`]+`",
24 ":py:data:`[^`]+`",
25 ":py:mod:`[^`]+`",
26 ":func:`[^`]+`",
27 ":mod:`[^`]+`",
28 ":ref:`[^`]+`",
29 ":class:`[^`]+`",
30 ":pep:`[^`]+`",
31 ":data:`[^`]+`",
32 ":exc:`[^`]+`",
33 ":term:`[^`]+`",
34 ":meth:`[^`]+`",
35 ":envvar:`[^`]+`",
36 ":file:`[^`]+`",
37 ":attr:`[^`]+`",
38 ":const:`[^`]+`",
39 ":issue:`[^`]+`",
40 ":opcode:`[^`]+`",
41 ":option:`[^`]+`",
42 ":program:`[^`]+`",
43 ":keyword:`[^`]+`",
44 ":RFC:`[^`]+`",
45 ":doc:`[^`]+`",
46 "``[^`]+``",
47 "`[^`]+`__",
48 "`[^`]+`_",
49 "\*\*.+\*\*", # bold text between **
50 "\*.+\*", # italic text between *
51 ]
52
53 _exps = [re.compile(e) for e in _patterns]
54
55 def protect_sphinx_directives(s: str) -> Tuple[dict, str]:
56 """
57 Parameters:
58 string containing the text to translate
59
60 Returns:
61 dictionary containing all the placeholder text as keys
62 and the correct value.
63 """
64
65 i = 0
66 d: Dict[str, str] = {}
67 for exp in _exps:
68 matches = exp.findall(s)
69 if DEBUG:
70 print(exp, matches)
71 for match in matches:
72 ph = f"XASDF{str(i).zfill(2)}"
73 s = s.replace(match, ph)
74 if ph in d and VERBOSE:
75 print(f"Error: {ph} is already in the dictionary")
76 print("new", match)
77 print("old", d[ph])
78 d[ph] = match
79 i += 1
80 return d, s
81
82
83 def undo_sphinx_directives_protection(placeholders: dict, translated_text: str) -> str:
84 for ph, value in placeholders.items():
85 translated_text = translated_text.replace(ph, value)
86 if DEBUG:
87 print(ph, value)
88 print(translated_text)
89 return translated_text
90
91
92 if __name__ == "__main__":
93 filename = sys.argv[1]
94 if not os.path.isfile(filename):
95 print(f"File not found: '{filename}'")
96 sys.exit(-1)
97
98 po = polib.pofile(filename)
99 translator = GoogleTranslator(source="en", target="es")
100
101 for entry in po:
102 # If the entry has already a translation, skip.
103 if SKIP_TRANSLATED_ENTRIES and entry.msgstr:
104 continue
105
106 print("\nEN|", entry.msgid)
107 placeholders, temp_text = protect_sphinx_directives(entry.msgid)
108 if VERBOSE:
109 print(temp_text)
110 print(placeholders)
111
112 # Translate the temporary text without sphinx statements
113 translated_text = translator.translate(temp_text)
114
115 # Recover sphinx statements
116 real_text = undo_sphinx_directives_protection(placeholders, translated_text)
117 print("ES|", real_text)
118
119 # Replace the po file translated entry
120 entry.msgstr = real_text
121
122 # Save the file after all the entries are translated
123 po.save()
124
[end of scripts/translate.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/scripts/translate.py b/scripts/translate.py
--- a/scripts/translate.py
+++ b/scripts/translate.py
@@ -46,8 +46,8 @@
"``[^`]+``",
"`[^`]+`__",
"`[^`]+`_",
- "\*\*.+\*\*", # bold text between **
- "\*.+\*", # italic text between *
+ "\*\*[^\*]+\*\*", # bold text between **
+ "\*[^\*]+\*", # italic text between *
]
_exps = [re.compile(e) for e in _patterns]
| {"golden_diff": "diff --git a/scripts/translate.py b/scripts/translate.py\n--- a/scripts/translate.py\n+++ b/scripts/translate.py\n@@ -46,8 +46,8 @@\n \"``[^`]+``\",\n \"`[^`]+`__\",\n \"`[^`]+`_\",\n- \"\\*\\*.+\\*\\*\", # bold text between **\n- \"\\*.+\\*\", # italic text between *\n+ \"\\*\\*[^\\*]+\\*\\*\", # bold text between **\n+ \"\\*[^\\*]+\\*\", # italic text between *\n ]\n \n _exps = [re.compile(e) for e in _patterns]\n", "issue": "Translate 'library/http.server.po'\nThis needs to reach 100% translated.\n\nThe rendered version of this file will be available at https://docs.python.org/es/3.10/library/http.server.html once translated.\nMeanwhile, the English version is shown.\n\nCurrent stats for `library/http.server.po`:\n\n* Fuzzy: 4\n* Percent translated: 97.8%\n* Entries: 87 / 89\n* Untranslated: 2\n\nPlease, comment here if you want this file to be assigned to you and an member will assign it to you as soon as possible, so you can start working on it.\n\nRemember to follow the steps in our [Contributing Guide](https://python-docs-es.readthedocs.io/page/CONTRIBUTING.html).\n", "before_files": [{"content": "import os\nimport re\nimport sys\nfrom typing import Dict, Tuple\n\nimport polib\n\nVERBOSE = False\nDEBUG = False\nSKIP_TRANSLATED_ENTRIES = True\n\ntry:\n from deep_translator import GoogleTranslator\nexcept ImportError:\n print(\"Error: This util script needs `deep_translator` to be installed\")\n sys.exit(1)\n\n_patterns = [\n \":c:func:`[^`]+`\",\n \":c:type:`[^`]+`\",\n \":c:macro:`[^`]+`\",\n \":c:member:`[^`]+`\",\n \":c:data:`[^`]+`\",\n \":py:data:`[^`]+`\",\n \":py:mod:`[^`]+`\",\n \":func:`[^`]+`\",\n \":mod:`[^`]+`\",\n \":ref:`[^`]+`\",\n \":class:`[^`]+`\",\n \":pep:`[^`]+`\",\n \":data:`[^`]+`\",\n \":exc:`[^`]+`\",\n \":term:`[^`]+`\",\n \":meth:`[^`]+`\",\n \":envvar:`[^`]+`\",\n \":file:`[^`]+`\",\n \":attr:`[^`]+`\",\n \":const:`[^`]+`\",\n \":issue:`[^`]+`\",\n \":opcode:`[^`]+`\",\n \":option:`[^`]+`\",\n \":program:`[^`]+`\",\n \":keyword:`[^`]+`\",\n \":RFC:`[^`]+`\",\n \":doc:`[^`]+`\",\n \"``[^`]+``\",\n \"`[^`]+`__\",\n \"`[^`]+`_\",\n \"\\*\\*.+\\*\\*\", # bold text between **\n \"\\*.+\\*\", # italic text between *\n]\n\n_exps = [re.compile(e) for e in _patterns]\n\ndef protect_sphinx_directives(s: str) -> Tuple[dict, str]:\n \"\"\"\n Parameters:\n string containing the text to translate\n\n Returns:\n dictionary containing all the placeholder text as keys\n and the correct value.\n \"\"\"\n\n i = 0\n d: Dict[str, str] = {}\n for exp in _exps:\n matches = exp.findall(s)\n if DEBUG:\n print(exp, matches)\n for match in matches:\n ph = f\"XASDF{str(i).zfill(2)}\"\n s = s.replace(match, ph)\n if ph in d and VERBOSE:\n print(f\"Error: {ph} is already in the dictionary\")\n print(\"new\", match)\n print(\"old\", d[ph])\n d[ph] = match\n i += 1\n return d, s\n\n\ndef undo_sphinx_directives_protection(placeholders: dict, translated_text: str) -> str:\n for ph, value in placeholders.items():\n translated_text = translated_text.replace(ph, value)\n if DEBUG:\n print(ph, value)\n print(translated_text)\n return translated_text\n\n\nif __name__ == \"__main__\":\n filename = sys.argv[1]\n if not os.path.isfile(filename):\n print(f\"File not found: '{filename}'\")\n sys.exit(-1)\n\n po = polib.pofile(filename)\n translator = GoogleTranslator(source=\"en\", target=\"es\")\n\n for entry in po:\n # If the entry has already a translation, skip.\n if SKIP_TRANSLATED_ENTRIES and entry.msgstr:\n continue\n\n print(\"\\nEN|\", entry.msgid)\n placeholders, temp_text = protect_sphinx_directives(entry.msgid)\n if VERBOSE:\n print(temp_text)\n print(placeholders)\n\n # Translate the temporary text without sphinx statements\n translated_text = translator.translate(temp_text)\n\n # Recover sphinx statements\n real_text = undo_sphinx_directives_protection(placeholders, translated_text)\n print(\"ES|\", real_text)\n\n # Replace the po file translated entry\n entry.msgstr = real_text\n\n # Save the file after all the entries are translated\n po.save()\n", "path": "scripts/translate.py"}]} | 1,844 | 137 |
gh_patches_debug_8128 | rasdani/github-patches | git_diff | ethereum__web3.py-1930 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Changed pypiwin32 to pywin32
### What was wrong?
pypiwin32 is just an empty package requiring pywin32, so this can just be required directly. As far as I know, pypiwin32 is only there for historical reasons.
Related to Issue #1721
### How was it fixed?
change it in setup.py
### Todo:
- [ ] Add entry to the [release notes](https://github.com/ethereum/web3.py/blob/master/newsfragments/README.md)
#### Cute Animal Picture
</issue>
<code>
[start of setup.py]
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3 from setuptools import (
4 find_packages,
5 setup,
6 )
7
8 extras_require = {
9 'tester': [
10 "eth-tester[py-evm]==v0.5.0-beta.3",
11 "py-geth>=2.4.0,<3",
12 ],
13 'linter': [
14 "flake8==3.8.3",
15 "isort>=4.2.15,<4.3.5",
16 "mypy==0.730",
17 ],
18 'docs': [
19 "mock",
20 "sphinx-better-theme>=0.1.4",
21 "click>=5.1",
22 "configparser==3.5.0",
23 "contextlib2>=0.5.4",
24 "py-geth>=2.4.0,<3",
25 "py-solc>=0.4.0",
26 "pytest>=4.4.0,<5.0.0",
27 "sphinx>=2.4.4,<3",
28 "sphinx_rtd_theme>=0.1.9",
29 "toposort>=1.4",
30 "towncrier>=19.2.0,<20",
31 "urllib3",
32 "web3>=2.1.0",
33 "wheel"
34 ],
35 'dev': [
36 "bumpversion",
37 "flaky>=3.3.0",
38 "hypothesis>=3.31.2,<6",
39 "pytest>=4.4.0,<5.0.0",
40 "pytest-asyncio>=0.10.0,<0.11",
41 "pytest-mock>=1.10,<2",
42 "pytest-pythonpath>=0.3",
43 "pytest-watch>=4.2,<5",
44 "pytest-xdist>=1.29,<2",
45 "setuptools>=38.6.0",
46 "tox>=1.8.0",
47 "tqdm>4.32,<5",
48 "twine>=1.13,<2",
49 "when-changed>=0.3.0,<0.4"
50 ]
51 }
52
53 extras_require['dev'] = (
54 extras_require['tester']
55 + extras_require['linter']
56 + extras_require['docs']
57 + extras_require['dev']
58 )
59
60 with open('./README.md') as readme:
61 long_description = readme.read()
62
63 setup(
64 name='web3',
65 # *IMPORTANT*: Don't manually change the version here. Use the 'bumpversion' utility.
66 version='5.17.0',
67 description="""Web3.py""",
68 long_description_content_type='text/markdown',
69 long_description=long_description,
70 author='Piper Merriam',
71 author_email='[email protected]',
72 url='https://github.com/ethereum/web3.py',
73 include_package_data=True,
74 install_requires=[
75 "eth-abi>=2.0.0b6,<3.0.0",
76 "eth-account>=0.5.3,<0.6.0",
77 "eth-hash[pycryptodome]>=0.2.0,<1.0.0",
78 "eth-typing>=2.0.0,<3.0.0",
79 "eth-utils>=1.9.5,<2.0.0",
80 "hexbytes>=0.1.0,<1.0.0",
81 "ipfshttpclient==0.7.0a1",
82 "jsonschema>=3.2.0,<4.0.0",
83 "lru-dict>=1.1.6,<2.0.0",
84 "protobuf>=3.10.0,<4",
85 "pypiwin32>=223;platform_system=='Windows'",
86 "requests>=2.16.0,<3.0.0",
87 # remove typing_extensions after python_requires>=3.8, see web3._utils.compat
88 "typing-extensions>=3.7.4.1,<4;python_version<'3.8'",
89 "websockets>=8.1.0,<9.0.0",
90 ],
91 python_requires='>=3.6,<4',
92 extras_require=extras_require,
93 py_modules=['web3', 'ens', 'ethpm'],
94 entry_points={"pytest11": ["pytest_ethereum = web3.tools.pytest_ethereum.plugins"]},
95 license="MIT",
96 zip_safe=False,
97 keywords='ethereum',
98 packages=find_packages(exclude=["tests", "tests.*"]),
99 package_data={"web3": ["py.typed"]},
100 classifiers=[
101 'Development Status :: 5 - Production/Stable',
102 'Intended Audience :: Developers',
103 'License :: OSI Approved :: MIT License',
104 'Natural Language :: English',
105 'Programming Language :: Python :: 3',
106 'Programming Language :: Python :: 3.6',
107 'Programming Language :: Python :: 3.7',
108 'Programming Language :: Python :: 3.8',
109 ],
110 )
111
[end of setup.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -82,7 +82,7 @@
"jsonschema>=3.2.0,<4.0.0",
"lru-dict>=1.1.6,<2.0.0",
"protobuf>=3.10.0,<4",
- "pypiwin32>=223;platform_system=='Windows'",
+ "pywin32>=223;platform_system=='Windows'",
"requests>=2.16.0,<3.0.0",
# remove typing_extensions after python_requires>=3.8, see web3._utils.compat
"typing-extensions>=3.7.4.1,<4;python_version<'3.8'",
| {"golden_diff": "diff --git a/setup.py b/setup.py\n--- a/setup.py\n+++ b/setup.py\n@@ -82,7 +82,7 @@\n \"jsonschema>=3.2.0,<4.0.0\",\n \"lru-dict>=1.1.6,<2.0.0\",\n \"protobuf>=3.10.0,<4\",\n- \"pypiwin32>=223;platform_system=='Windows'\",\n+ \"pywin32>=223;platform_system=='Windows'\",\n \"requests>=2.16.0,<3.0.0\",\n # remove typing_extensions after python_requires>=3.8, see web3._utils.compat\n \"typing-extensions>=3.7.4.1,<4;python_version<'3.8'\",\n", "issue": "Changed pypiwin32 to pywin32\n### What was wrong?\r\npypiwin32 is just an empty package requiring pywin32, so this can just be required directly. As far as I know, pypiwin32 is only there for historical reasons.\r\n\r\nRelated to Issue #1721\r\n\r\n### How was it fixed?\r\nchange it in setup.py\r\n\r\n### Todo:\r\n- [ ] Add entry to the [release notes](https://github.com/ethereum/web3.py/blob/master/newsfragments/README.md)\r\n\r\n#### Cute Animal Picture\r\n\r\n\r\n\n", "before_files": [{"content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\nfrom setuptools import (\n find_packages,\n setup,\n)\n\nextras_require = {\n 'tester': [\n \"eth-tester[py-evm]==v0.5.0-beta.3\",\n \"py-geth>=2.4.0,<3\",\n ],\n 'linter': [\n \"flake8==3.8.3\",\n \"isort>=4.2.15,<4.3.5\",\n \"mypy==0.730\",\n ],\n 'docs': [\n \"mock\",\n \"sphinx-better-theme>=0.1.4\",\n \"click>=5.1\",\n \"configparser==3.5.0\",\n \"contextlib2>=0.5.4\",\n \"py-geth>=2.4.0,<3\",\n \"py-solc>=0.4.0\",\n \"pytest>=4.4.0,<5.0.0\",\n \"sphinx>=2.4.4,<3\",\n \"sphinx_rtd_theme>=0.1.9\",\n \"toposort>=1.4\",\n \"towncrier>=19.2.0,<20\",\n \"urllib3\",\n \"web3>=2.1.0\",\n \"wheel\"\n ],\n 'dev': [\n \"bumpversion\",\n \"flaky>=3.3.0\",\n \"hypothesis>=3.31.2,<6\",\n \"pytest>=4.4.0,<5.0.0\",\n \"pytest-asyncio>=0.10.0,<0.11\",\n \"pytest-mock>=1.10,<2\",\n \"pytest-pythonpath>=0.3\",\n \"pytest-watch>=4.2,<5\",\n \"pytest-xdist>=1.29,<2\",\n \"setuptools>=38.6.0\",\n \"tox>=1.8.0\",\n \"tqdm>4.32,<5\",\n \"twine>=1.13,<2\",\n \"when-changed>=0.3.0,<0.4\"\n ]\n}\n\nextras_require['dev'] = (\n extras_require['tester']\n + extras_require['linter']\n + extras_require['docs']\n + extras_require['dev']\n)\n\nwith open('./README.md') as readme:\n long_description = readme.read()\n\nsetup(\n name='web3',\n # *IMPORTANT*: Don't manually change the version here. Use the 'bumpversion' utility.\n version='5.17.0',\n description=\"\"\"Web3.py\"\"\",\n long_description_content_type='text/markdown',\n long_description=long_description,\n author='Piper Merriam',\n author_email='[email protected]',\n url='https://github.com/ethereum/web3.py',\n include_package_data=True,\n install_requires=[\n \"eth-abi>=2.0.0b6,<3.0.0\",\n \"eth-account>=0.5.3,<0.6.0\",\n \"eth-hash[pycryptodome]>=0.2.0,<1.0.0\",\n \"eth-typing>=2.0.0,<3.0.0\",\n \"eth-utils>=1.9.5,<2.0.0\",\n \"hexbytes>=0.1.0,<1.0.0\",\n \"ipfshttpclient==0.7.0a1\",\n \"jsonschema>=3.2.0,<4.0.0\",\n \"lru-dict>=1.1.6,<2.0.0\",\n \"protobuf>=3.10.0,<4\",\n \"pypiwin32>=223;platform_system=='Windows'\",\n \"requests>=2.16.0,<3.0.0\",\n # remove typing_extensions after python_requires>=3.8, see web3._utils.compat\n \"typing-extensions>=3.7.4.1,<4;python_version<'3.8'\",\n \"websockets>=8.1.0,<9.0.0\",\n ],\n python_requires='>=3.6,<4',\n extras_require=extras_require,\n py_modules=['web3', 'ens', 'ethpm'],\n entry_points={\"pytest11\": [\"pytest_ethereum = web3.tools.pytest_ethereum.plugins\"]},\n license=\"MIT\",\n zip_safe=False,\n keywords='ethereum',\n packages=find_packages(exclude=[\"tests\", \"tests.*\"]),\n package_data={\"web3\": [\"py.typed\"]},\n classifiers=[\n 'Development Status :: 5 - Production/Stable',\n 'Intended Audience :: Developers',\n 'License :: OSI Approved :: MIT License',\n 'Natural Language :: English',\n 'Programming Language :: Python :: 3',\n 'Programming Language :: Python :: 3.6',\n 'Programming Language :: Python :: 3.7',\n 'Programming Language :: Python :: 3.8',\n ],\n)\n", "path": "setup.py"}]} | 2,037 | 176 |
gh_patches_debug_17761 | rasdani/github-patches | git_diff | PokemonGoF__PokemonGo-Bot-6111 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
complete_tutorial.py appears to have issue
Using fresh clones of both master and dev. Also clean install of pgoapi. Using default config to test results in same error.
```[2017-07-18 19:25:38] Error during protoc parsing - ignored.
[2017-07-18 19:25:38] Parsing sub RPC responses...
[2017-07-18 19:25:38] Parsing class: pogoprotos.networking.responses.get_map_objects_response_pb2.get_map_objects_response
[2017-07-18 19:25:38] Generating main RPC request...
[2017-07-18 19:25:38] Incremented RPC Request ID: 5359935399462436910
[2017-07-18 19:25:38] Generating sub RPC requests...
[2017-07-18 19:25:38] Subrequest class: pogoprotos.networking.requests.messages.set_avatar_message_pb2.set_avatar_message
[2017-07-18 19:25:38] Request failed, retrying.
[2017-07-18 19:25:39] [bot_interrupted] Bot caught SIGINT. Shutting down.
[2017-07-18 19:25:39] Creating a new request...
[2017-07-18 19:25:39] Adding 'GET_INVENTORY' to RPC request
[2017-07-18 19:25:39] Generating main RPC request...
[2017-07-18 19:25:39] Incremented RPC Request ID: 7861386947506208815
[2017-07-18 19:25:39] Generating sub RPC requests...
[2017-07-18 19:25:39] Generating platform RPC requests...
[2017-07-18 19:25:39] Session Ticket still valid for further 00:29:21 hours (1500420339304 < 1500422100916)
[2017-07-18 19:25:39] Found Session Ticket - using this instead of oauth token
[2017-07-18 19:25:39] "POST /api/v137_1/hash HTTP/1.1" 200 None
[2017-07-18 19:25:39] Generated protobuf request:
status_code: 2
</issue>
<code>
[start of pokemongo_bot/cell_workers/complete_tutorial.py]
1 import random
2
3 from pokemongo_bot import logger
4 from pokemongo_bot.inventory import player
5 from pokemongo_bot.base_task import BaseTask
6 from pokemongo_bot.worker_result import WorkerResult
7 from pokemongo_bot.human_behaviour import sleep
8
9
10
11 class CompleteTutorial(BaseTask):
12
13 SUPPORTED_TASK_API_VERSION = 1
14
15 def initialize(self):
16 self.nickname = self.config.get('nickname','')
17 self.team = self.config.get('team',0)
18 self.tutorial_run = True
19 self.team_run = True
20
21 def work(self):
22
23 if self.tutorial_run:
24 self.tutorial_run = False
25 if not self._check_tutorial_state():
26 return WorkerResult.ERROR
27
28 if self.team_run and player()._level >= 5:
29 self.team_run = False
30 if not self._set_team():
31 return WorkerResult.ERROR
32
33 return WorkerResult.SUCCESS
34
35 def _check_tutorial_state(self):
36 self._player=self.bot.player_data
37
38 tutorial_state = self._player.get('tutorial_state', [])
39 # LEGAL_SCREEN = 0
40 if not 0 in tutorial_state:
41 sleep(2)
42 if self._set_tutorial_state(0):
43 self.logger.info('Completed legal screen')
44 tutorial_state = self._player.get('tutorial_state', [])
45 else:
46 return False
47
48 # AVATAR_SELECTION = 1
49 if not 1 in tutorial_state:
50 sleep(7)
51 if self._set_avatar():
52 if self._set_tutorial_state(1):
53 self.logger.info('Completed avatar selection')
54 tutorial_state = self._player.get('tutorial_state', [])
55 else:
56 return False
57 else:
58 self.logger.error('Error during avatar selection')
59 return False
60
61 # POKEMON_CAPTURE = 3
62 if not 3 in tutorial_state:
63 sleep(10)
64 if self._encounter_tutorial():
65 self.logger.info('Completed first capture')
66 else:
67 self.logger.error('Error during first capture')
68 return False
69
70 # NAME_SELECTION = 4
71 if not 4 in tutorial_state:
72 if not self.nickname:
73 self.logger.info("No nickname defined in config")
74 return False
75
76 self.logger.info(u'Trying to set {} as nickname'.format(self.nickname))
77 sleep(5)
78 if self._set_nickname(self.nickname):
79 self._set_tutorial_state(4)
80 tutorial_state = self._player.get('tutorial_state', [])
81 else:
82 self.logger.error('Error trying to set nickname')
83 return False
84
85 # FIRST_TIME_EXPERIENCE_COMPLETE = 7
86 if not 7 in tutorial_state:
87 if self._set_tutorial_state(7):
88 self.logger.info('Completed first time experience')
89 else:
90 return False
91
92 return True
93
94 def _encounter_tutorial(self):
95 # You just need to call the API with the pokemon you choose
96 # Probably can't get MewTwo as first pokemon though
97 first_pokemon_id = random.choice([1, 4, 7])
98
99 request = self.bot.api.create_request()
100 request.encounter_tutorial_complete(pokemon_id=first_pokemon_id)
101 response_dict = request.call()
102
103 try:
104 if response_dict['responses']['ENCOUNTER_TUTORIAL_COMPLETE']['result'] == 1:
105 return True
106 else:
107 self.logger.error("Error during encouter tutorial")
108 return False
109 except KeyError:
110 self.logger.error("KeyError during encouter tutorial")
111 return False
112
113 def _random_avatar(self):
114 avatar= {}
115 # 0 = Male, 1 = Female
116 avatar['gender']=random.randint(0,1)
117 # What is the max value of each parameter ?
118 # Default is 0, anyway human player will stop
119 # at the first choices in general, so fully
120 # random on the whole avatar space is not the way to go either
121 avatar['skin']=random.randint(0,3)
122 avatar['hair']=random.randint(0,3)
123 avatar['shirt']=random.randint(0,3)
124 avatar['pants']=random.randint(0,3)
125 avatar['hat']=random.randint(0,3)
126 avatar['shoes']=random.randint(0,3)
127 avatar['eyes']=random.randint(0,3)
128 avatar['backpack']=random.randint(0,3)
129 return avatar
130
131 def _set_avatar(self):
132 avatar = self._random_avatar()
133
134 request = self.bot.api.create_request()
135 request.set_avatar(player_avatar=avatar)
136 response_dict = request.call()
137
138 status = response_dict['responses']['SET_AVATAR']['status']
139 try:
140 if status == 1:
141 return True
142 else:
143 error_codes = {
144 0: 'UNSET',
145 1: 'SUCCESS',
146 2: 'AVATAR_ALREADY_SET',
147 3: 'FAILURE',
148 }
149 self.logger.error("Error during avatar selection : {}".format(error_codes[status]))
150 return False
151 except KeyError:
152 self.logger.error("KeyError during avatar selection")
153 return False
154
155 def _set_nickname(self, nickname):
156 request = self.bot.api.create_request()
157 request.claim_codename(codename=nickname)
158 response_dict = request.call()
159
160 try:
161 result = response_dict['responses']['CLAIM_CODENAME']['status']
162 if result == 1:
163 self.logger.info(u'Name changed to {}'.format(nickname))
164 return True
165 else:
166 # Would be nice to get the text directly from the proto Enum
167 error_codes = {
168 0: 'UNSET',
169 1: 'SUCCESS',
170 2: 'CODENAME_NOT_AVAILABLE',
171 3: 'CODENAME_NOT_VALID',
172 4: 'CURRENT_OWNER',
173 5: 'CODENAME_CHANGE_NOT_ALLOWED'
174 }
175 self.logger.error(
176 u'Error while changing nickname : {}'.format(error_codes[result]))
177 return False
178 except KeyError:
179 return False
180
181 def _set_tutorial_state(self, completed):
182 request = self.bot.api.create_request()
183 request.mark_tutorial_complete(tutorials_completed=[completed],
184 send_marketing_emails=False,
185 send_push_notifications=False)
186 response_dict = request.call()
187
188 try:
189 self._player = response_dict['responses'][
190 'MARK_TUTORIAL_COMPLETE']['player_data']
191 return response_dict['responses']['MARK_TUTORIAL_COMPLETE']['success']
192 except KeyError:
193 self.logger.error("KeyError while setting tutorial state")
194 return False
195
196 def _set_team(self):
197 if self.team == 0:
198 return True
199
200 if self.bot.player_data.get('team', 0) != 0:
201 self.logger.info(u'Team already picked')
202 return True
203
204 sleep(10)
205 request = self.bot.api.create_request()
206 request.set_player_team(team=self.team)
207 response_dict = request.call()
208
209 try:
210 result = response_dict['responses']['SET_PLAYER_TEAM']['status']
211 if result == 1:
212 team_codes = {
213 1: 'Mystic (BLUE)',
214 2: 'Valor (RED)',
215 3: 'Instinct (YELLOW)'
216 }
217 self.logger.info(u'Picked Team {}.'.format(team_codes[self.team]))
218 return True
219 else:
220 error_codes = {
221 0: 'UNSET',
222 1: 'SUCCESS',
223 2: 'TEAM_ALREADY_SET',
224 3: 'FAILURE'
225 }
226 self.logger.error(u'Error while picking team : {}'.format(error_codes[result]))
227 return False
228 except KeyError:
229 return False
230
231
[end of pokemongo_bot/cell_workers/complete_tutorial.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pokemongo_bot/cell_workers/complete_tutorial.py b/pokemongo_bot/cell_workers/complete_tutorial.py
--- a/pokemongo_bot/cell_workers/complete_tutorial.py
+++ b/pokemongo_bot/cell_workers/complete_tutorial.py
@@ -119,13 +119,13 @@
# at the first choices in general, so fully
# random on the whole avatar space is not the way to go either
avatar['skin']=random.randint(0,3)
- avatar['hair']=random.randint(0,3)
- avatar['shirt']=random.randint(0,3)
- avatar['pants']=random.randint(0,3)
- avatar['hat']=random.randint(0,3)
- avatar['shoes']=random.randint(0,3)
- avatar['eyes']=random.randint(0,3)
- avatar['backpack']=random.randint(0,3)
+ avatar['avartar_hair']=random.randint(0,3)
+ avatar['avartar_shirt']=random.randint(0,3)
+ avatar['avartar_pants']=random.randint(0,3)
+ avatar['avartar_hat']=random.randint(0,3)
+ avatar['avartar_shoes']=random.randint(0,3)
+ avatar['avartar_eyes']=random.randint(0,3)
+ avatar['avartar_backpack']=random.randint(0,3)
return avatar
def _set_avatar(self):
| {"golden_diff": "diff --git a/pokemongo_bot/cell_workers/complete_tutorial.py b/pokemongo_bot/cell_workers/complete_tutorial.py\n--- a/pokemongo_bot/cell_workers/complete_tutorial.py\n+++ b/pokemongo_bot/cell_workers/complete_tutorial.py\n@@ -119,13 +119,13 @@\n # at the first choices in general, so fully\n # random on the whole avatar space is not the way to go either\n avatar['skin']=random.randint(0,3)\n- avatar['hair']=random.randint(0,3)\n- avatar['shirt']=random.randint(0,3)\n- avatar['pants']=random.randint(0,3)\n- avatar['hat']=random.randint(0,3)\n- avatar['shoes']=random.randint(0,3)\n- avatar['eyes']=random.randint(0,3)\n- avatar['backpack']=random.randint(0,3)\n+ avatar['avartar_hair']=random.randint(0,3)\n+ avatar['avartar_shirt']=random.randint(0,3)\n+ avatar['avartar_pants']=random.randint(0,3)\n+ avatar['avartar_hat']=random.randint(0,3)\n+ avatar['avartar_shoes']=random.randint(0,3)\n+ avatar['avartar_eyes']=random.randint(0,3)\n+ avatar['avartar_backpack']=random.randint(0,3)\n return avatar\n \n def _set_avatar(self):\n", "issue": "complete_tutorial.py appears to have issue\nUsing fresh clones of both master and dev. Also clean install of pgoapi. Using default config to test results in same error.\r\n\r\n```[2017-07-18 19:25:38] Error during protoc parsing - ignored.\r\n[2017-07-18 19:25:38] Parsing sub RPC responses...\r\n[2017-07-18 19:25:38] Parsing class: pogoprotos.networking.responses.get_map_objects_response_pb2.get_map_objects_response\r\n[2017-07-18 19:25:38] Generating main RPC request...\r\n[2017-07-18 19:25:38] Incremented RPC Request ID: 5359935399462436910\r\n[2017-07-18 19:25:38] Generating sub RPC requests...\r\n[2017-07-18 19:25:38] Subrequest class: pogoprotos.networking.requests.messages.set_avatar_message_pb2.set_avatar_message\r\n[2017-07-18 19:25:38] Request failed, retrying.\r\n[2017-07-18 19:25:39] [bot_interrupted] Bot caught SIGINT. Shutting down.\r\n[2017-07-18 19:25:39] Creating a new request...\r\n[2017-07-18 19:25:39] Adding 'GET_INVENTORY' to RPC request\r\n[2017-07-18 19:25:39] Generating main RPC request...\r\n[2017-07-18 19:25:39] Incremented RPC Request ID: 7861386947506208815\r\n[2017-07-18 19:25:39] Generating sub RPC requests...\r\n[2017-07-18 19:25:39] Generating platform RPC requests...\r\n[2017-07-18 19:25:39] Session Ticket still valid for further 00:29:21 hours (1500420339304 < 1500422100916)\r\n[2017-07-18 19:25:39] Found Session Ticket - using this instead of oauth token\r\n[2017-07-18 19:25:39] \"POST /api/v137_1/hash HTTP/1.1\" 200 None\r\n[2017-07-18 19:25:39] Generated protobuf request:\r\nstatus_code: 2\r\n\r\n\n", "before_files": [{"content": "import random\n\nfrom pokemongo_bot import logger\nfrom pokemongo_bot.inventory import player\nfrom pokemongo_bot.base_task import BaseTask\nfrom pokemongo_bot.worker_result import WorkerResult\nfrom pokemongo_bot.human_behaviour import sleep\n\n\n\nclass CompleteTutorial(BaseTask):\n\n SUPPORTED_TASK_API_VERSION = 1\n\n def initialize(self):\n self.nickname = self.config.get('nickname','')\n self.team = self.config.get('team',0)\n self.tutorial_run = True\n self.team_run = True\n\n def work(self):\n\n if self.tutorial_run:\n self.tutorial_run = False\n if not self._check_tutorial_state():\n return WorkerResult.ERROR\n\n if self.team_run and player()._level >= 5:\n self.team_run = False\n if not self._set_team():\n return WorkerResult.ERROR\n\n return WorkerResult.SUCCESS\n\n def _check_tutorial_state(self):\n self._player=self.bot.player_data\n\n tutorial_state = self._player.get('tutorial_state', [])\n # LEGAL_SCREEN = 0\n if not 0 in tutorial_state:\n sleep(2)\n if self._set_tutorial_state(0):\n self.logger.info('Completed legal screen')\n tutorial_state = self._player.get('tutorial_state', [])\n else:\n return False\n\n # AVATAR_SELECTION = 1\n if not 1 in tutorial_state:\n sleep(7)\n if self._set_avatar():\n if self._set_tutorial_state(1):\n self.logger.info('Completed avatar selection')\n tutorial_state = self._player.get('tutorial_state', [])\n else:\n return False\n else:\n self.logger.error('Error during avatar selection')\n return False\n\n # POKEMON_CAPTURE = 3\n if not 3 in tutorial_state:\n sleep(10)\n if self._encounter_tutorial():\n self.logger.info('Completed first capture')\n else:\n self.logger.error('Error during first capture')\n return False\n\n # NAME_SELECTION = 4\n if not 4 in tutorial_state:\n if not self.nickname:\n self.logger.info(\"No nickname defined in config\")\n return False\n\n self.logger.info(u'Trying to set {} as nickname'.format(self.nickname))\n sleep(5)\n if self._set_nickname(self.nickname):\n self._set_tutorial_state(4)\n tutorial_state = self._player.get('tutorial_state', [])\n else:\n self.logger.error('Error trying to set nickname')\n return False\n\n # FIRST_TIME_EXPERIENCE_COMPLETE = 7\n if not 7 in tutorial_state:\n if self._set_tutorial_state(7):\n self.logger.info('Completed first time experience')\n else:\n return False\n\n return True\n\n def _encounter_tutorial(self):\n # You just need to call the API with the pokemon you choose\n # Probably can't get MewTwo as first pokemon though\n first_pokemon_id = random.choice([1, 4, 7])\n \n request = self.bot.api.create_request()\n request.encounter_tutorial_complete(pokemon_id=first_pokemon_id)\n response_dict = request.call()\n \n try:\n if response_dict['responses']['ENCOUNTER_TUTORIAL_COMPLETE']['result'] == 1:\n return True\n else:\n self.logger.error(\"Error during encouter tutorial\")\n return False\n except KeyError:\n self.logger.error(\"KeyError during encouter tutorial\")\n return False\n\n def _random_avatar(self):\n avatar= {}\n # 0 = Male, 1 = Female\n avatar['gender']=random.randint(0,1)\n # What is the max value of each parameter ?\n # Default is 0, anyway human player will stop\n # at the first choices in general, so fully\n # random on the whole avatar space is not the way to go either\n avatar['skin']=random.randint(0,3)\n avatar['hair']=random.randint(0,3)\n avatar['shirt']=random.randint(0,3)\n avatar['pants']=random.randint(0,3)\n avatar['hat']=random.randint(0,3)\n avatar['shoes']=random.randint(0,3)\n avatar['eyes']=random.randint(0,3)\n avatar['backpack']=random.randint(0,3)\n return avatar\n\n def _set_avatar(self):\n avatar = self._random_avatar()\n \n request = self.bot.api.create_request()\n request.set_avatar(player_avatar=avatar)\n response_dict = request.call()\n \n status = response_dict['responses']['SET_AVATAR']['status']\n try:\n if status == 1:\n return True\n else:\n error_codes = {\n 0: 'UNSET',\n 1: 'SUCCESS',\n 2: 'AVATAR_ALREADY_SET',\n 3: 'FAILURE',\n }\n self.logger.error(\"Error during avatar selection : {}\".format(error_codes[status]))\n return False\n except KeyError:\n self.logger.error(\"KeyError during avatar selection\")\n return False\n\n def _set_nickname(self, nickname):\n request = self.bot.api.create_request()\n request.claim_codename(codename=nickname)\n response_dict = request.call()\n \n try:\n result = response_dict['responses']['CLAIM_CODENAME']['status']\n if result == 1:\n self.logger.info(u'Name changed to {}'.format(nickname))\n return True\n else:\n # Would be nice to get the text directly from the proto Enum\n error_codes = {\n 0: 'UNSET',\n 1: 'SUCCESS',\n 2: 'CODENAME_NOT_AVAILABLE',\n 3: 'CODENAME_NOT_VALID',\n 4: 'CURRENT_OWNER',\n 5: 'CODENAME_CHANGE_NOT_ALLOWED'\n }\n self.logger.error(\n u'Error while changing nickname : {}'.format(error_codes[result]))\n return False\n except KeyError:\n return False\n\n def _set_tutorial_state(self, completed):\n request = self.bot.api.create_request()\n request.mark_tutorial_complete(tutorials_completed=[completed], \n send_marketing_emails=False,\n send_push_notifications=False)\n response_dict = request.call()\n \n try:\n self._player = response_dict['responses'][\n 'MARK_TUTORIAL_COMPLETE']['player_data']\n return response_dict['responses']['MARK_TUTORIAL_COMPLETE']['success']\n except KeyError:\n self.logger.error(\"KeyError while setting tutorial state\")\n return False\n\n def _set_team(self):\n if self.team == 0:\n return True\n\n if self.bot.player_data.get('team', 0) != 0:\n self.logger.info(u'Team already picked')\n return True\n\n sleep(10)\n request = self.bot.api.create_request()\n request.set_player_team(team=self.team)\n response_dict = request.call()\n \n try:\n result = response_dict['responses']['SET_PLAYER_TEAM']['status']\n if result == 1:\n team_codes = {\n 1: 'Mystic (BLUE)',\n 2: 'Valor (RED)',\n 3: 'Instinct (YELLOW)'\n }\n self.logger.info(u'Picked Team {}.'.format(team_codes[self.team]))\n return True\n else:\n error_codes = {\n 0: 'UNSET',\n 1: 'SUCCESS',\n 2: 'TEAM_ALREADY_SET',\n 3: 'FAILURE'\n }\n self.logger.error(u'Error while picking team : {}'.format(error_codes[result]))\n return False\n except KeyError:\n return False\n\n", "path": "pokemongo_bot/cell_workers/complete_tutorial.py"}]} | 3,486 | 342 |
gh_patches_debug_21345 | rasdani/github-patches | git_diff | pystiche__pystiche-321 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Download buttons for all examples are broken for RTD
This is a bug in `sphinx-gallery` and should be fixed with sphinx-gallery/sphinx-gallery#706.
</issue>
<code>
[start of docs/source/conf.py]
1 # Configuration file for the Sphinx documentation builder.
2 #
3 # This file only contains a selection of the most common options. For a full list see
4 # the documentation:
5 # https://www.sphinx-doc.org/en/master/usage/configuration.html
6
7 # -- Imports ---------------------------------------------------------------------------
8
9 import os
10 import re
11 import shutil
12 import warnings
13 from datetime import datetime
14 from distutils.util import strtobool
15 from importlib_metadata import metadata as extract_metadata
16 from os import path
17 from urllib.parse import urljoin
18
19 from sphinx_gallery.sorting import ExampleTitleSortKey, ExplicitOrder
20
21 import torch
22
23 from pystiche.misc import download_file
24
25 # -- Run config ------------------------------------------------------------------------
26
27
28 def get_bool_env_var(name, default=False):
29 try:
30 return bool(strtobool(os.environ[name]))
31 except KeyError:
32 return default
33
34
35 run_by_github_actions = get_bool_env_var("GITHUB_ACTIONS")
36 run_by_travis_ci = get_bool_env_var("TRAVIS")
37 run_by_appveyor = get_bool_env_var("APPVEYOR")
38 run_by_rtd = get_bool_env_var("READTHEDOCS")
39 run_by_ci = (
40 run_by_github_actions
41 or run_by_travis_ci
42 or run_by_appveyor
43 or run_by_rtd
44 or get_bool_env_var("CI")
45 )
46
47 # -- Path setup ------------------------------------------------------------------------
48
49 # If extensions (or modules to document with autodoc) are in another directory, add
50 # these directories to sys.path here. If the directory is relative to the documentation
51 # root, use os.path.abspath to make it absolute, like shown here.
52 #
53 # import os
54 # import sys
55 # sys.path.insert(0, os.path.abspath('.'))
56
57 HERE = path.dirname(__file__)
58 PROJECT_ROOT = path.abspath(path.join(HERE, "..", ".."))
59
60
61 # -- Project information ---------------------------------------------------------------
62
63 metadata = extract_metadata("pystiche")
64
65 project = metadata["name"]
66 author = metadata["author"]
67 copyright = f"{datetime.now().year}, {author}"
68 release = metadata["version"]
69 canonical_version = release.split("+")[0]
70 version = ".".join(canonical_version.split(".")[:3])
71
72
73 # -- General configuration -------------------------------------------------------------
74
75 # Add any Sphinx extension module names here, as strings. They can be extensions coming
76 # with Sphinx (named 'sphinx.ext.*') or your custom ones.
77 extensions = [
78 "sphinx.ext.autodoc",
79 "sphinx.ext.napoleon",
80 "sphinx.ext.coverage",
81 "sphinx.ext.intersphinx",
82 "sphinxcontrib.bibtex",
83 "sphinx_gallery.gen_gallery",
84 "sphinx_autodoc_typehints",
85 ]
86
87 # Add any paths that contain templates here, relative to this directory.
88 templates_path = ["_templates"]
89
90 # List of patterns, relative to source directory, that match files and directories to
91 # ignore when looking for source files. This pattern also affects html_static_path and
92 # html_extra_path.
93 exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
94
95 # -- intersphinx configuration ---------------------------------------------------------
96
97 intersphinx_mapping = {
98 "python": ("https://docs.python.org/3.6", None),
99 "torch": ("https://pytorch.org/docs/stable/", None),
100 "torchvision": ("https://pytorch.org/docs/stable/", None),
101 "PIL": ("https://pillow.readthedocs.io/en/stable/", None),
102 "numpy": ("https://numpy.org/doc/1.18/", None),
103 "requests": ("https://requests.readthedocs.io/en/stable/", None),
104 "matplotlib": ("https://matplotlib.org", None),
105 }
106
107
108 # -- sphinx-gallery configuration ------------------------------------------------------
109
110 plot_gallery = get_bool_env_var("PYSTICHE_PLOT_GALLERY", default=True) and not run_by_ci
111 download_gallery = get_bool_env_var("PYSTICHE_DOWNLOAD_GALLERY") or run_by_ci
112
113 if download_gallery:
114 base = "https://download.pystiche.org/galleries/"
115 is_dev = version != release
116 file = "master.zip" if is_dev else f"v{version}.zip"
117
118 url = urljoin(base, file)
119 print(f"Downloading pre-built galleries from {url}")
120 download_file(url, file)
121
122 try:
123 shutil.rmtree("galleries")
124 except FileNotFoundError:
125 pass
126 shutil.unpack_archive(file, extract_dir=".")
127 os.remove(file)
128
129 # This is workaround for a bug in sphinx-gallery that replaces absolute with
130 # relative paths. See https://github.com/pmeier/pystiche/pull/325 for details.
131 index_file = path.join("galleries", "examples", "index.rst")
132 with open(index_file, "r") as fh:
133 content = fh.read()
134 content = re.sub(
135 r"(?P<file>examples_(python|jupyter)\.zip) <[\w/.]+>",
136 r"\g<file> <\g<file>>",
137 content,
138 )
139 with open(index_file, "w") as fh:
140 fh.write(content)
141
142 extensions.remove("sphinx_gallery.gen_gallery")
143 extensions.append("sphinx_gallery.load_style")
144 plot_gallery = False
145
146 if plot_gallery and not torch.cuda.is_available():
147 msg = (
148 "The galleries will be built, but CUDA is not available. "
149 "This will take a long time."
150 )
151 print(msg)
152
153
154 def show_cuda_memory(func):
155 torch.cuda.reset_peak_memory_stats()
156 out = func()
157
158 stats = torch.cuda.memory_stats()
159 peak_bytes_usage = stats["allocated_bytes.all.peak"]
160 memory = peak_bytes_usage / 1024 ** 2
161
162 return memory, out
163
164
165 class PysticheExampleTitleSortKey(ExampleTitleSortKey):
166 def __call__(self, filename):
167 # The beginner example *without* pystiche is placed before the example *with*
168 # to clarify the narrative.
169 if filename == "example_nst_without_pystiche.py":
170 return "1"
171 elif filename == "example_nst_with_pystiche.py":
172 return "2"
173 else:
174 return super().__call__(filename)
175
176
177 sphinx_gallery_conf = {
178 "examples_dirs": path.join(PROJECT_ROOT, "examples"),
179 "gallery_dirs": path.join("galleries", "examples"),
180 "filename_pattern": os.sep + "example_",
181 "line_numbers": True,
182 "remove_config_comments": True,
183 "plot_gallery": plot_gallery,
184 "subsection_order": ExplicitOrder(
185 [
186 path.join("..", "..", "examples", sub_gallery)
187 for sub_gallery in ("beginner", "advanced")
188 ]
189 ),
190 "within_subsection_order": PysticheExampleTitleSortKey,
191 "show_memory": show_cuda_memory if torch.cuda.is_available() else True,
192 }
193
194 # Remove matplotlib agg warnings from generated doc when using plt.show
195 warnings.filterwarnings(
196 "ignore",
197 category=UserWarning,
198 message=(
199 "Matplotlib is currently using agg, which is a non-GUI backend, so cannot show "
200 "the figure."
201 ),
202 )
203
204
205 # -- Options for HTML output -----------------------------------------------------------
206
207 # The theme to use for HTML and HTML Help pages. See the documentation for a list of
208 # builtin themes.
209 html_theme = "sphinx_rtd_theme"
210
211 # Add any paths that contain custom static files (such as style sheets) here, relative
212 # to this directory. They are copied after the builtin static files, so a file named
213 # "default.css" will overwrite the builtin "default.css".
214 # html_static_path = ["_static"]
215
216
217 # -- Latex / Mathjax config ------------------------------------------------------------
218
219 with open(path.join(HERE, "custom_cmds.tex"), "r") as fh:
220 custom_cmds = fh.read()
221
222 latex_elements = {"preamble": custom_cmds}
223
224 mathjax_inline = [r"\(" + custom_cmds, r"\)"]
225 mathjax_display = [r"\[" + custom_cmds, r"\]"]
226
[end of docs/source/conf.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/docs/source/conf.py b/docs/source/conf.py
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -7,7 +7,6 @@
# -- Imports ---------------------------------------------------------------------------
import os
-import re
import shutil
import warnings
from datetime import datetime
@@ -126,19 +125,6 @@
shutil.unpack_archive(file, extract_dir=".")
os.remove(file)
- # This is workaround for a bug in sphinx-gallery that replaces absolute with
- # relative paths. See https://github.com/pmeier/pystiche/pull/325 for details.
- index_file = path.join("galleries", "examples", "index.rst")
- with open(index_file, "r") as fh:
- content = fh.read()
- content = re.sub(
- r"(?P<file>examples_(python|jupyter)\.zip) <[\w/.]+>",
- r"\g<file> <\g<file>>",
- content,
- )
- with open(index_file, "w") as fh:
- fh.write(content)
-
extensions.remove("sphinx_gallery.gen_gallery")
extensions.append("sphinx_gallery.load_style")
plot_gallery = False
| {"golden_diff": "diff --git a/docs/source/conf.py b/docs/source/conf.py\n--- a/docs/source/conf.py\n+++ b/docs/source/conf.py\n@@ -7,7 +7,6 @@\n # -- Imports ---------------------------------------------------------------------------\n \n import os\n-import re\n import shutil\n import warnings\n from datetime import datetime\n@@ -126,19 +125,6 @@\n shutil.unpack_archive(file, extract_dir=\".\")\n os.remove(file)\n \n- # This is workaround for a bug in sphinx-gallery that replaces absolute with\n- # relative paths. See https://github.com/pmeier/pystiche/pull/325 for details.\n- index_file = path.join(\"galleries\", \"examples\", \"index.rst\")\n- with open(index_file, \"r\") as fh:\n- content = fh.read()\n- content = re.sub(\n- r\"(?P<file>examples_(python|jupyter)\\.zip) <[\\w/.]+>\",\n- r\"\\g<file> <\\g<file>>\",\n- content,\n- )\n- with open(index_file, \"w\") as fh:\n- fh.write(content)\n-\n extensions.remove(\"sphinx_gallery.gen_gallery\")\n extensions.append(\"sphinx_gallery.load_style\")\n plot_gallery = False\n", "issue": "Download buttons for all examples are broken for RTD\n\r\n\r\nThis is a bug in `sphinx-gallery` and should be fixed with sphinx-gallery/sphinx-gallery#706.\n", "before_files": [{"content": "# Configuration file for the Sphinx documentation builder.\n#\n# This file only contains a selection of the most common options. For a full list see\n# the documentation:\n# https://www.sphinx-doc.org/en/master/usage/configuration.html\n\n# -- Imports ---------------------------------------------------------------------------\n\nimport os\nimport re\nimport shutil\nimport warnings\nfrom datetime import datetime\nfrom distutils.util import strtobool\nfrom importlib_metadata import metadata as extract_metadata\nfrom os import path\nfrom urllib.parse import urljoin\n\nfrom sphinx_gallery.sorting import ExampleTitleSortKey, ExplicitOrder\n\nimport torch\n\nfrom pystiche.misc import download_file\n\n# -- Run config ------------------------------------------------------------------------\n\n\ndef get_bool_env_var(name, default=False):\n try:\n return bool(strtobool(os.environ[name]))\n except KeyError:\n return default\n\n\nrun_by_github_actions = get_bool_env_var(\"GITHUB_ACTIONS\")\nrun_by_travis_ci = get_bool_env_var(\"TRAVIS\")\nrun_by_appveyor = get_bool_env_var(\"APPVEYOR\")\nrun_by_rtd = get_bool_env_var(\"READTHEDOCS\")\nrun_by_ci = (\n run_by_github_actions\n or run_by_travis_ci\n or run_by_appveyor\n or run_by_rtd\n or get_bool_env_var(\"CI\")\n)\n\n# -- Path setup ------------------------------------------------------------------------\n\n# If extensions (or modules to document with autodoc) are in another directory, add\n# these directories to sys.path here. If the directory is relative to the documentation\n# root, use os.path.abspath to make it absolute, like shown here.\n#\n# import os\n# import sys\n# sys.path.insert(0, os.path.abspath('.'))\n\nHERE = path.dirname(__file__)\nPROJECT_ROOT = path.abspath(path.join(HERE, \"..\", \"..\"))\n\n\n# -- Project information ---------------------------------------------------------------\n\nmetadata = extract_metadata(\"pystiche\")\n\nproject = metadata[\"name\"]\nauthor = metadata[\"author\"]\ncopyright = f\"{datetime.now().year}, {author}\"\nrelease = metadata[\"version\"]\ncanonical_version = release.split(\"+\")[0]\nversion = \".\".join(canonical_version.split(\".\")[:3])\n\n\n# -- General configuration -------------------------------------------------------------\n\n# Add any Sphinx extension module names here, as strings. They can be extensions coming\n# with Sphinx (named 'sphinx.ext.*') or your custom ones.\nextensions = [\n \"sphinx.ext.autodoc\",\n \"sphinx.ext.napoleon\",\n \"sphinx.ext.coverage\",\n \"sphinx.ext.intersphinx\",\n \"sphinxcontrib.bibtex\",\n \"sphinx_gallery.gen_gallery\",\n \"sphinx_autodoc_typehints\",\n]\n\n# Add any paths that contain templates here, relative to this directory.\ntemplates_path = [\"_templates\"]\n\n# List of patterns, relative to source directory, that match files and directories to\n# ignore when looking for source files. This pattern also affects html_static_path and\n# html_extra_path.\nexclude_patterns = [\"_build\", \"Thumbs.db\", \".DS_Store\"]\n\n# -- intersphinx configuration ---------------------------------------------------------\n\nintersphinx_mapping = {\n \"python\": (\"https://docs.python.org/3.6\", None),\n \"torch\": (\"https://pytorch.org/docs/stable/\", None),\n \"torchvision\": (\"https://pytorch.org/docs/stable/\", None),\n \"PIL\": (\"https://pillow.readthedocs.io/en/stable/\", None),\n \"numpy\": (\"https://numpy.org/doc/1.18/\", None),\n \"requests\": (\"https://requests.readthedocs.io/en/stable/\", None),\n \"matplotlib\": (\"https://matplotlib.org\", None),\n}\n\n\n# -- sphinx-gallery configuration ------------------------------------------------------\n\nplot_gallery = get_bool_env_var(\"PYSTICHE_PLOT_GALLERY\", default=True) and not run_by_ci\ndownload_gallery = get_bool_env_var(\"PYSTICHE_DOWNLOAD_GALLERY\") or run_by_ci\n\nif download_gallery:\n base = \"https://download.pystiche.org/galleries/\"\n is_dev = version != release\n file = \"master.zip\" if is_dev else f\"v{version}.zip\"\n\n url = urljoin(base, file)\n print(f\"Downloading pre-built galleries from {url}\")\n download_file(url, file)\n\n try:\n shutil.rmtree(\"galleries\")\n except FileNotFoundError:\n pass\n shutil.unpack_archive(file, extract_dir=\".\")\n os.remove(file)\n\n # This is workaround for a bug in sphinx-gallery that replaces absolute with\n # relative paths. See https://github.com/pmeier/pystiche/pull/325 for details.\n index_file = path.join(\"galleries\", \"examples\", \"index.rst\")\n with open(index_file, \"r\") as fh:\n content = fh.read()\n content = re.sub(\n r\"(?P<file>examples_(python|jupyter)\\.zip) <[\\w/.]+>\",\n r\"\\g<file> <\\g<file>>\",\n content,\n )\n with open(index_file, \"w\") as fh:\n fh.write(content)\n\n extensions.remove(\"sphinx_gallery.gen_gallery\")\n extensions.append(\"sphinx_gallery.load_style\")\n plot_gallery = False\n\nif plot_gallery and not torch.cuda.is_available():\n msg = (\n \"The galleries will be built, but CUDA is not available. \"\n \"This will take a long time.\"\n )\n print(msg)\n\n\ndef show_cuda_memory(func):\n torch.cuda.reset_peak_memory_stats()\n out = func()\n\n stats = torch.cuda.memory_stats()\n peak_bytes_usage = stats[\"allocated_bytes.all.peak\"]\n memory = peak_bytes_usage / 1024 ** 2\n\n return memory, out\n\n\nclass PysticheExampleTitleSortKey(ExampleTitleSortKey):\n def __call__(self, filename):\n # The beginner example *without* pystiche is placed before the example *with*\n # to clarify the narrative.\n if filename == \"example_nst_without_pystiche.py\":\n return \"1\"\n elif filename == \"example_nst_with_pystiche.py\":\n return \"2\"\n else:\n return super().__call__(filename)\n\n\nsphinx_gallery_conf = {\n \"examples_dirs\": path.join(PROJECT_ROOT, \"examples\"),\n \"gallery_dirs\": path.join(\"galleries\", \"examples\"),\n \"filename_pattern\": os.sep + \"example_\",\n \"line_numbers\": True,\n \"remove_config_comments\": True,\n \"plot_gallery\": plot_gallery,\n \"subsection_order\": ExplicitOrder(\n [\n path.join(\"..\", \"..\", \"examples\", sub_gallery)\n for sub_gallery in (\"beginner\", \"advanced\")\n ]\n ),\n \"within_subsection_order\": PysticheExampleTitleSortKey,\n \"show_memory\": show_cuda_memory if torch.cuda.is_available() else True,\n}\n\n# Remove matplotlib agg warnings from generated doc when using plt.show\nwarnings.filterwarnings(\n \"ignore\",\n category=UserWarning,\n message=(\n \"Matplotlib is currently using agg, which is a non-GUI backend, so cannot show \"\n \"the figure.\"\n ),\n)\n\n\n# -- Options for HTML output -----------------------------------------------------------\n\n# The theme to use for HTML and HTML Help pages. See the documentation for a list of\n# builtin themes.\nhtml_theme = \"sphinx_rtd_theme\"\n\n# Add any paths that contain custom static files (such as style sheets) here, relative\n# to this directory. They are copied after the builtin static files, so a file named\n# \"default.css\" will overwrite the builtin \"default.css\".\n# html_static_path = [\"_static\"]\n\n\n# -- Latex / Mathjax config ------------------------------------------------------------\n\nwith open(path.join(HERE, \"custom_cmds.tex\"), \"r\") as fh:\n custom_cmds = fh.read()\n\nlatex_elements = {\"preamble\": custom_cmds}\n\nmathjax_inline = [r\"\\(\" + custom_cmds, r\"\\)\"]\nmathjax_display = [r\"\\[\" + custom_cmds, r\"\\]\"]\n", "path": "docs/source/conf.py"}]} | 2,931 | 274 |
gh_patches_debug_26144 | rasdani/github-patches | git_diff | weecology__retriever-751 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Gentry site CEDRAL has data entry error
On line 130 of the CEDRAL data there is an extra `'` in the `voucher1` column. This is related to a parsing error in the raw Excel file that makes all following columns off by one, which results in the `Counts` column containing non-integer values (because the first size ends up in the counts column) and the stems table will be missing a single, 2.5, value.
</issue>
<code>
[start of scripts/gentry.py]
1 #retriever
2 """Retriever script for Alwyn H. Gentry Forest Transect Dataset
3
4 """
5 from __future__ import print_function
6 # from __future__ import unicode_literals
7 from builtins import str
8 from builtins import range
9
10 import os
11 import sys
12 import zipfile
13 import xlrd
14 from retriever.lib.templates import Script
15 from retriever.lib.models import Table
16 from retriever.lib.excel import Excel
17 from retriever import open_fr, open_fw, open_csvw, to_str
18
19 TAX_GROUPS = 9756 #9819
20
21
22 class main(Script):
23 def __init__(self, **kwargs):
24 Script.__init__(self, **kwargs)
25 self.name = "Alwyn H. Gentry Forest Transect Dataset"
26 self.shortname = "Gentry"
27 self.retriever_minimum_version = '2.0.dev'
28 self.version = '1.1'
29 self.urls = {"stems": "http://www.mobot.org/mobot/gentry/123/all_Excel.zip",
30 "sites": "https://ndownloader.figshare.com/files/5515373",
31 "species": "",
32 "counts": ""}
33 self.tags = ["Taxon > Plants", "Spatial Scale > Global",
34 "Data Type > Observational"]
35 self.ref = "http://www.mobot.org/mobot/research/gentry/welcome.shtml"
36 self.addendum = """Researchers who make use of the data in publications are requested to acknowledge Alwyn H. Gentry, the Missouri Botanical Garden, and collectors who assisted Gentry or contributed data for specific sites. It is also requested that a reprint of any publication making use of the Gentry Forest Transect Data be sent to:
37
38 Bruce E. Ponman
39 Missouri Botanical Garden
40 P.O. Box 299
41 St. Louis, MO 63166-0299
42 U.S.A. """
43
44 def download(self, engine=None, debug=False):
45 Script.download(self, engine, debug)
46
47 self.engine.auto_create_table(Table("sites"), url=self.urls["sites"], filename='gentry_sites.csv')
48 self.engine.insert_data_from_url(self.urls["sites"])
49
50 self.engine.download_file(self.urls["stems"], "all_Excel.zip")
51 local_zip = zipfile.ZipFile(self.engine.format_filename("all_Excel.zip"))
52 filelist = local_zip.namelist()
53 local_zip.close()
54 self.engine.download_files_from_archive(self.urls["stems"], filelist)
55
56 filelist = [os.path.basename(filename) for filename in filelist]
57
58 # Currently all_Excel.zip is missing CURUYUQU.xls
59 # Download it separately and add it to the file list
60 if not self.engine.find_file('CURUYUQU.xls'):
61 self.engine.download_file("http://www.mobot.org/mobot/gentry/123/samerica/CURUYUQU.xls", "CURUYUQU.xls")
62 filelist.append('CURUYUQU.xls')
63
64 lines = []
65 tax = []
66 for filename in filelist:
67 print("Extracting data from " + filename + "...")
68 book = xlrd.open_workbook(self.engine.format_filename(filename))
69 sh = book.sheet_by_index(0)
70 rows = sh.nrows
71 cn = {'stems': []}
72 n = 0
73 for colnum, c in enumerate(sh.row(0)):
74 if not Excel.empty_cell(c):
75 cid = c.value.lower().strip()
76 # line number column is sometimes named differently
77 if cid in ["sub", "number"]:
78 cid = "line"
79 # the "number of individuals" column is named in various
80 # different ways; they always at least contain "nd"
81 if "nd" in cid:
82 cid = "count"
83 # in QUIAPACA.xls the "number of individuals" column is
84 # misnamed "STEMDBH" just like the stems columns, so weep
85 # for the state of scientific data and then fix manually
86 if filename == "QUIAPACA.xls" and colnum == 13:
87 cid = "count"
88
89 # if column is a stem, add it to the list of stems;
90 # otherwise, make note of the column name/number
91 if "stem" in cid or "dbh" in cid:
92 cn["stems"].append(n)
93 else:
94 cn[cid] = n
95 n += 1
96 # sometimes, a data file does not contain a liana or count column
97 if not "liana" in list(cn.keys()):
98 cn["liana"] = -1
99 if not "count" in list(cn.keys()):
100 cn["count"] = -1
101 for i in range(1, rows):
102 row = sh.row(i)
103 cellcount = len(row)
104 # make sure the row is real, not just empty cells
105 if not all(Excel.empty_cell(cell) for cell in row):
106 try:
107 this_line = {}
108
109 # get the following information from the appropriate columns
110 for i in ["line", "family", "genus", "species",
111 "liana", "count"]:
112 if cn[i] > -1:
113 if row[cn[i]].ctype != 2:
114 # if the cell type(ctype) is not a number
115 this_line[i] = row[cn[i]].value.lower().strip().replace("\\", "/").replace('"', '')
116 else:
117 this_line[i] = row[cn[i]].value
118 if this_line[i] == '`':
119 this_line[i] = 1
120 this_line["stems"] = [row[c]
121 for c in cn["stems"]
122 if not Excel.empty_cell(row[c])]
123 this_line["site"] = filename[0:-4]
124
125 lines.append(this_line)
126
127 # Check how far the species is identified
128 full_id = 0
129 if len(this_line["species"]) < 3:
130 if len(this_line["genus"]) < 3:
131 id_level = "family"
132 else:
133 id_level = "genus"
134 else:
135 id_level = "species"
136 full_id = 1
137 tax.append((this_line["family"],
138 this_line["genus"],
139 this_line["species"],
140 id_level,
141 str(full_id)))
142 except:
143 raise
144 pass
145
146 tax = sorted(tax, key=lambda group: group[0] + " " + group[1] + " " + group[2])
147 unique_tax = []
148 tax_dict = {}
149 tax_count = 0
150
151 # Get all unique families/genera/species
152 print("\n")
153 for group in tax:
154 if not (group in unique_tax):
155 unique_tax.append(group)
156 tax_count += 1
157 tax_dict[group[0:3]] = tax_count
158 if tax_count % 10 == 0:
159 msg = "Generating taxonomic groups: " + str(tax_count) + " / " + str(TAX_GROUPS)
160 sys.stdout.flush()
161 sys.stdout.write(msg + "\b" * len(msg))
162 print("\n")
163 # Create species table
164 table = Table("species", delimiter=",")
165 table.columns=[("species_id" , ("pk-int",) ),
166 ("family" , ("char", ) ),
167 ("genus" , ("char", ) ),
168 ("species" , ("char", ) ),
169 ("id_level" , ("char", 10) ),
170 ("full_id" , ("int",) )]
171
172 data = [[str(tax_dict[group[:3]])] + ['"%s"' % g for g in group]
173 for group in unique_tax]
174 table.pk = 'species_id'
175 table.contains_pk = True
176
177 self.engine.table = table
178 self.engine.create_table()
179 self.engine.add_to_table(data)
180
181 # Create stems table
182 table = Table("stems", delimiter=",")
183 table.columns=[("stem_id" , ("pk-auto",) ),
184 ("line" , ("int",) ),
185 ("species_id" , ("int",) ),
186 ("site_code" , ("char", 12) ),
187 ("liana" , ("char", 10) ),
188 ("stem" , ("double",) )]
189 stems = []
190 counts = []
191 for line in lines:
192 try:
193 liana = line["liana"]
194 except KeyError:
195 liana = ""
196 species_info = [line["line"],
197 tax_dict[(line["family"],
198 line["genus"],
199 line["species"])],
200 line["site"],
201 liana
202 ]
203 try:
204 counts.append([value for value in species_info + [line["count"]]])
205 except KeyError:
206 pass
207
208 for i in line["stems"]:
209 stem = species_info + [str(i)]
210 stems.append(stem)
211
212 self.engine.table = table
213 self.engine.create_table()
214 self.engine.add_to_table(stems)
215
216 # Create counts table
217 table = Table("counts", delimiter=",", contains_pk=False)
218 table.columns=[("count_id" , ("pk-auto",) ),
219 ("line" , ("int",) ),
220 ("species_id" , ("int",) ),
221 ("site_code" , ("char", 12) ),
222 ("liana" , ("char", 10) ),
223 ("count" , ("double",) )]
224 self.engine.table = table
225 self.engine.create_table()
226 self.engine.add_to_table(counts)
227
228 return self.engine
229 SCRIPT = main()
230
[end of scripts/gentry.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/scripts/gentry.py b/scripts/gentry.py
--- a/scripts/gentry.py
+++ b/scripts/gentry.py
@@ -25,7 +25,7 @@
self.name = "Alwyn H. Gentry Forest Transect Dataset"
self.shortname = "Gentry"
self.retriever_minimum_version = '2.0.dev'
- self.version = '1.1'
+ self.version = '1.2'
self.urls = {"stems": "http://www.mobot.org/mobot/gentry/123/all_Excel.zip",
"sites": "https://ndownloader.figshare.com/files/5515373",
"species": "",
@@ -122,6 +122,13 @@
if not Excel.empty_cell(row[c])]
this_line["site"] = filename[0:-4]
+ # Manually correct CEDRAL data, which has a single line
+ # that is shifted by one to the left starting at Liana
+ if this_line["site"] == "CEDRAL" and type(this_line["liana"]) == float:
+ this_line["liana"] = ""
+ this_line["count"] = 3
+ this_line["stems"] = [2.5, 2.5, 30, 18, 25]
+
lines.append(this_line)
# Check how far the species is identified
| {"golden_diff": "diff --git a/scripts/gentry.py b/scripts/gentry.py\n--- a/scripts/gentry.py\n+++ b/scripts/gentry.py\n@@ -25,7 +25,7 @@\n self.name = \"Alwyn H. Gentry Forest Transect Dataset\"\n self.shortname = \"Gentry\"\n self.retriever_minimum_version = '2.0.dev'\n- self.version = '1.1'\n+ self.version = '1.2'\n self.urls = {\"stems\": \"http://www.mobot.org/mobot/gentry/123/all_Excel.zip\",\n \"sites\": \"https://ndownloader.figshare.com/files/5515373\",\n \"species\": \"\",\n@@ -122,6 +122,13 @@\n if not Excel.empty_cell(row[c])]\n this_line[\"site\"] = filename[0:-4]\n \n+ # Manually correct CEDRAL data, which has a single line\n+ # that is shifted by one to the left starting at Liana\n+ if this_line[\"site\"] == \"CEDRAL\" and type(this_line[\"liana\"]) == float:\n+ this_line[\"liana\"] = \"\"\n+ this_line[\"count\"] = 3\n+ this_line[\"stems\"] = [2.5, 2.5, 30, 18, 25]\n+\n lines.append(this_line)\n \n # Check how far the species is identified\n", "issue": "Gentry site CEDRAL has data entry error\nOn line 130 of the CEDRAL data there is an extra `'` in the `voucher1` column. This is related to a parsing error in the raw Excel file that makes all following columns off by one, which results in the `Counts` column containing non-integer values (because the first size ends up in the counts column) and the stems table will be missing a single, 2.5, value.\n\n", "before_files": [{"content": "#retriever\n\"\"\"Retriever script for Alwyn H. Gentry Forest Transect Dataset\n\n\"\"\"\nfrom __future__ import print_function\n# from __future__ import unicode_literals\nfrom builtins import str\nfrom builtins import range\n\nimport os\nimport sys\nimport zipfile\nimport xlrd\nfrom retriever.lib.templates import Script\nfrom retriever.lib.models import Table\nfrom retriever.lib.excel import Excel\nfrom retriever import open_fr, open_fw, open_csvw, to_str\n\nTAX_GROUPS = 9756 #9819\n\n\nclass main(Script):\n def __init__(self, **kwargs):\n Script.__init__(self, **kwargs)\n self.name = \"Alwyn H. Gentry Forest Transect Dataset\"\n self.shortname = \"Gentry\"\n self.retriever_minimum_version = '2.0.dev'\n self.version = '1.1'\n self.urls = {\"stems\": \"http://www.mobot.org/mobot/gentry/123/all_Excel.zip\",\n \"sites\": \"https://ndownloader.figshare.com/files/5515373\",\n \"species\": \"\",\n \"counts\": \"\"}\n self.tags = [\"Taxon > Plants\", \"Spatial Scale > Global\",\n \"Data Type > Observational\"]\n self.ref = \"http://www.mobot.org/mobot/research/gentry/welcome.shtml\"\n self.addendum = \"\"\"Researchers who make use of the data in publications are requested to acknowledge Alwyn H. Gentry, the Missouri Botanical Garden, and collectors who assisted Gentry or contributed data for specific sites. It is also requested that a reprint of any publication making use of the Gentry Forest Transect Data be sent to:\n\nBruce E. Ponman\nMissouri Botanical Garden\nP.O. Box 299\nSt. Louis, MO 63166-0299\nU.S.A. \"\"\"\n\n def download(self, engine=None, debug=False):\n Script.download(self, engine, debug)\n\n self.engine.auto_create_table(Table(\"sites\"), url=self.urls[\"sites\"], filename='gentry_sites.csv')\n self.engine.insert_data_from_url(self.urls[\"sites\"])\n\n self.engine.download_file(self.urls[\"stems\"], \"all_Excel.zip\")\n local_zip = zipfile.ZipFile(self.engine.format_filename(\"all_Excel.zip\"))\n filelist = local_zip.namelist()\n local_zip.close()\n self.engine.download_files_from_archive(self.urls[\"stems\"], filelist)\n\n filelist = [os.path.basename(filename) for filename in filelist]\n\n # Currently all_Excel.zip is missing CURUYUQU.xls\n # Download it separately and add it to the file list\n if not self.engine.find_file('CURUYUQU.xls'):\n self.engine.download_file(\"http://www.mobot.org/mobot/gentry/123/samerica/CURUYUQU.xls\", \"CURUYUQU.xls\")\n filelist.append('CURUYUQU.xls')\n\n lines = []\n tax = []\n for filename in filelist:\n print(\"Extracting data from \" + filename + \"...\")\n book = xlrd.open_workbook(self.engine.format_filename(filename))\n sh = book.sheet_by_index(0)\n rows = sh.nrows\n cn = {'stems': []}\n n = 0\n for colnum, c in enumerate(sh.row(0)):\n if not Excel.empty_cell(c):\n cid = c.value.lower().strip()\n # line number column is sometimes named differently\n if cid in [\"sub\", \"number\"]:\n cid = \"line\"\n # the \"number of individuals\" column is named in various\n # different ways; they always at least contain \"nd\"\n if \"nd\" in cid:\n cid = \"count\"\n # in QUIAPACA.xls the \"number of individuals\" column is\n # misnamed \"STEMDBH\" just like the stems columns, so weep\n # for the state of scientific data and then fix manually\n if filename == \"QUIAPACA.xls\" and colnum == 13:\n cid = \"count\"\n\n # if column is a stem, add it to the list of stems;\n # otherwise, make note of the column name/number\n if \"stem\" in cid or \"dbh\" in cid:\n cn[\"stems\"].append(n)\n else:\n cn[cid] = n\n n += 1\n # sometimes, a data file does not contain a liana or count column\n if not \"liana\" in list(cn.keys()):\n cn[\"liana\"] = -1\n if not \"count\" in list(cn.keys()):\n cn[\"count\"] = -1\n for i in range(1, rows):\n row = sh.row(i)\n cellcount = len(row)\n # make sure the row is real, not just empty cells\n if not all(Excel.empty_cell(cell) for cell in row):\n try:\n this_line = {}\n\n # get the following information from the appropriate columns\n for i in [\"line\", \"family\", \"genus\", \"species\",\n \"liana\", \"count\"]:\n if cn[i] > -1:\n if row[cn[i]].ctype != 2:\n # if the cell type(ctype) is not a number\n this_line[i] = row[cn[i]].value.lower().strip().replace(\"\\\\\", \"/\").replace('\"', '')\n else:\n this_line[i] = row[cn[i]].value\n if this_line[i] == '`':\n this_line[i] = 1\n this_line[\"stems\"] = [row[c]\n for c in cn[\"stems\"]\n if not Excel.empty_cell(row[c])]\n this_line[\"site\"] = filename[0:-4]\n\n lines.append(this_line)\n\n # Check how far the species is identified\n full_id = 0\n if len(this_line[\"species\"]) < 3:\n if len(this_line[\"genus\"]) < 3:\n id_level = \"family\"\n else:\n id_level = \"genus\"\n else:\n id_level = \"species\"\n full_id = 1\n tax.append((this_line[\"family\"],\n this_line[\"genus\"],\n this_line[\"species\"],\n id_level,\n str(full_id)))\n except:\n raise\n pass\n\n tax = sorted(tax, key=lambda group: group[0] + \" \" + group[1] + \" \" + group[2])\n unique_tax = []\n tax_dict = {}\n tax_count = 0\n\n # Get all unique families/genera/species\n print(\"\\n\")\n for group in tax:\n if not (group in unique_tax):\n unique_tax.append(group)\n tax_count += 1\n tax_dict[group[0:3]] = tax_count\n if tax_count % 10 == 0:\n msg = \"Generating taxonomic groups: \" + str(tax_count) + \" / \" + str(TAX_GROUPS)\n sys.stdout.flush()\n sys.stdout.write(msg + \"\\b\" * len(msg))\n print(\"\\n\")\n # Create species table\n table = Table(\"species\", delimiter=\",\")\n table.columns=[(\"species_id\" , (\"pk-int\",) ),\n (\"family\" , (\"char\", ) ),\n (\"genus\" , (\"char\", ) ),\n (\"species\" , (\"char\", ) ),\n (\"id_level\" , (\"char\", 10) ),\n (\"full_id\" , (\"int\",) )]\n\n data = [[str(tax_dict[group[:3]])] + ['\"%s\"' % g for g in group]\n for group in unique_tax]\n table.pk = 'species_id'\n table.contains_pk = True\n\n self.engine.table = table\n self.engine.create_table()\n self.engine.add_to_table(data)\n\n # Create stems table\n table = Table(\"stems\", delimiter=\",\")\n table.columns=[(\"stem_id\" , (\"pk-auto\",) ),\n (\"line\" , (\"int\",) ),\n (\"species_id\" , (\"int\",) ),\n (\"site_code\" , (\"char\", 12) ),\n (\"liana\" , (\"char\", 10) ),\n (\"stem\" , (\"double\",) )]\n stems = []\n counts = []\n for line in lines:\n try:\n liana = line[\"liana\"]\n except KeyError:\n liana = \"\"\n species_info = [line[\"line\"],\n tax_dict[(line[\"family\"],\n line[\"genus\"],\n line[\"species\"])],\n line[\"site\"],\n liana\n ]\n try:\n counts.append([value for value in species_info + [line[\"count\"]]])\n except KeyError:\n pass\n\n for i in line[\"stems\"]:\n stem = species_info + [str(i)]\n stems.append(stem)\n\n self.engine.table = table\n self.engine.create_table()\n self.engine.add_to_table(stems)\n\n # Create counts table\n table = Table(\"counts\", delimiter=\",\", contains_pk=False)\n table.columns=[(\"count_id\" , (\"pk-auto\",) ),\n (\"line\" , (\"int\",) ),\n (\"species_id\" , (\"int\",) ),\n (\"site_code\" , (\"char\", 12) ),\n (\"liana\" , (\"char\", 10) ),\n (\"count\" , (\"double\",) )]\n self.engine.table = table\n self.engine.create_table()\n self.engine.add_to_table(counts)\n\n return self.engine\nSCRIPT = main()\n", "path": "scripts/gentry.py"}]} | 3,345 | 320 |
gh_patches_debug_9273 | rasdani/github-patches | git_diff | google__fuzzbench-309 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
master cannot pass "make presubmit"
Current master branch has one failed at "``make presubmit``".
To reproduce: ``git clone https://github.com/google/fuzzbench ; cd fuzzbench ; git submodule update --init ; make install-dependencies ; source ./vene/bin/activate ; make presubmit``
https://github.com/google/fuzzbench/blob/41aa9b4267907185bd51514a6fb335ff70f4990d/experiment/test_measurer.py#L347
E assert 0 == 3798
Reference: https://google.github.io/fuzzbench/getting-started/prerequisites/
</issue>
<code>
[start of conftest.py]
1 # Copyright 2020 Google LLC
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14 """A pytest conftest.py file that defines fixtures and does other things many
15 tests might need (such as using an in-memory SQLite database)."""
16
17 import os
18 import sqlite3
19 from unittest import mock
20
21 import pytest
22 import sqlalchemy
23
24 from common import new_process
25
26 # Never wait for a timeout so that tests don't take any longer than they need
27 # to.
28 new_process.WAIT_SECONDS = 0
29
30 # Set this to an in-memory instance of SQLite so that db_utils can be imported
31 # without running a real Postgres database.
32 # pylint: disable=wrong-import-position
33 os.environ['SQL_DATABASE_URL'] = 'sqlite://'
34
35 from database import utils as db_utils
36 from database import models
37
38
39 # Give this a short name since it is a fixture.
40 @pytest.yield_fixture
41 def db(): # pylint: disable=invalid-name
42 """Connect to the SQLite database and create all the expected tables."""
43 db_utils.initialize()
44 models.Base.metadata.create_all(db_utils.engine)
45 with mock.patch('database.utils.cleanup'):
46 yield
47 db_utils.cleanup()
48
49
50 @sqlalchemy.event.listens_for(sqlalchemy.engine.Engine, 'connect')
51 def set_sqlite_pragma(connection, _):
52 """Force SQLite to enforce non-null foreign key relationships.
53 Based on
54 https://docs.sqlalchemy.org/en/13/dialects/sqlite.html#foreign-key-support
55 """
56 if not isinstance(connection, sqlite3.Connection):
57 return
58
59 cursor = connection.cursor()
60 cursor.execute('PRAGMA foreign_keys=ON')
61 cursor.close()
62
63
64 @pytest.yield_fixture
65 def environ():
66 """Patch environment."""
67 # TODO(metzman): Make sure this is used by all tests that modify the
68 # environment.
69 patcher = mock.patch.dict(os.environ, {})
70 patcher.start()
71 yield
72 patcher.stop()
73
74
75 @pytest.fixture
76 def experiment(tmp_path, environ): # pylint: disable=redefined-outer-name,unused-argument
77 """Mock an experiment."""
78 os.environ['WORK'] = str(tmp_path)
79 os.environ['EXPERIMENT'] = 'test-experiment'
80 os.environ['CLOUD_EXPERIMENT_BUCKET'] = 'gs://experiment-data'
81 os.environ['CLOUD_WEB_BUCKET'] = 'gs://web-bucket'
82 os.environ['CLOUD_PROJECT'] = 'fuzzbench'
83
[end of conftest.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/conftest.py b/conftest.py
--- a/conftest.py
+++ b/conftest.py
@@ -73,9 +73,9 @@
@pytest.fixture
-def experiment(tmp_path, environ): # pylint: disable=redefined-outer-name,unused-argument
+def experiment(environ): # pylint: disable=redefined-outer-name,unused-argument
"""Mock an experiment."""
- os.environ['WORK'] = str(tmp_path)
+ os.environ['WORK'] = '/work'
os.environ['EXPERIMENT'] = 'test-experiment'
os.environ['CLOUD_EXPERIMENT_BUCKET'] = 'gs://experiment-data'
os.environ['CLOUD_WEB_BUCKET'] = 'gs://web-bucket'
| {"golden_diff": "diff --git a/conftest.py b/conftest.py\n--- a/conftest.py\n+++ b/conftest.py\n@@ -73,9 +73,9 @@\n \n \n @pytest.fixture\n-def experiment(tmp_path, environ): # pylint: disable=redefined-outer-name,unused-argument\n+def experiment(environ): # pylint: disable=redefined-outer-name,unused-argument\n \"\"\"Mock an experiment.\"\"\"\n- os.environ['WORK'] = str(tmp_path)\n+ os.environ['WORK'] = '/work'\n os.environ['EXPERIMENT'] = 'test-experiment'\n os.environ['CLOUD_EXPERIMENT_BUCKET'] = 'gs://experiment-data'\n os.environ['CLOUD_WEB_BUCKET'] = 'gs://web-bucket'\n", "issue": "master cannot pass \"make presubmit\"\nCurrent master branch has one failed at \"``make presubmit``\".\r\n\r\nTo reproduce: ``git clone https://github.com/google/fuzzbench ; cd fuzzbench ; git submodule update --init ; make install-dependencies ; source ./vene/bin/activate ; make presubmit``\r\n\r\nhttps://github.com/google/fuzzbench/blob/41aa9b4267907185bd51514a6fb335ff70f4990d/experiment/test_measurer.py#L347\r\n\r\nE assert 0 == 3798\r\n\r\nReference: https://google.github.io/fuzzbench/getting-started/prerequisites/\n", "before_files": [{"content": "# Copyright 2020 Google LLC\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\"\"\"A pytest conftest.py file that defines fixtures and does other things many\ntests might need (such as using an in-memory SQLite database).\"\"\"\n\nimport os\nimport sqlite3\nfrom unittest import mock\n\nimport pytest\nimport sqlalchemy\n\nfrom common import new_process\n\n# Never wait for a timeout so that tests don't take any longer than they need\n# to.\nnew_process.WAIT_SECONDS = 0\n\n# Set this to an in-memory instance of SQLite so that db_utils can be imported\n# without running a real Postgres database.\n# pylint: disable=wrong-import-position\nos.environ['SQL_DATABASE_URL'] = 'sqlite://'\n\nfrom database import utils as db_utils\nfrom database import models\n\n\n# Give this a short name since it is a fixture.\[email protected]_fixture\ndef db(): # pylint: disable=invalid-name\n \"\"\"Connect to the SQLite database and create all the expected tables.\"\"\"\n db_utils.initialize()\n models.Base.metadata.create_all(db_utils.engine)\n with mock.patch('database.utils.cleanup'):\n yield\n db_utils.cleanup()\n\n\[email protected]_for(sqlalchemy.engine.Engine, 'connect')\ndef set_sqlite_pragma(connection, _):\n \"\"\"Force SQLite to enforce non-null foreign key relationships.\n Based on\n https://docs.sqlalchemy.org/en/13/dialects/sqlite.html#foreign-key-support\n \"\"\"\n if not isinstance(connection, sqlite3.Connection):\n return\n\n cursor = connection.cursor()\n cursor.execute('PRAGMA foreign_keys=ON')\n cursor.close()\n\n\[email protected]_fixture\ndef environ():\n \"\"\"Patch environment.\"\"\"\n # TODO(metzman): Make sure this is used by all tests that modify the\n # environment.\n patcher = mock.patch.dict(os.environ, {})\n patcher.start()\n yield\n patcher.stop()\n\n\[email protected]\ndef experiment(tmp_path, environ): # pylint: disable=redefined-outer-name,unused-argument\n \"\"\"Mock an experiment.\"\"\"\n os.environ['WORK'] = str(tmp_path)\n os.environ['EXPERIMENT'] = 'test-experiment'\n os.environ['CLOUD_EXPERIMENT_BUCKET'] = 'gs://experiment-data'\n os.environ['CLOUD_WEB_BUCKET'] = 'gs://web-bucket'\n os.environ['CLOUD_PROJECT'] = 'fuzzbench'\n", "path": "conftest.py"}]} | 1,480 | 166 |
gh_patches_debug_43702 | rasdani/github-patches | git_diff | liqd__a4-meinberlin-605 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Static/Assets directories in apps
Django says to include app specific static files in a `/static` directory in the root of the particular app (https://docs.djangoproject.com/en/1.11/howto/static-files/). On `runserver` Django collects static files from the project wide static directory (mentioned in base.py) and the `/static` directories within all apps, grouping them into one global `/static` directory.
Now, we don't need `.jsx` files in that global `/static` directory since they are required and put together into one file by webpack. Still, those files need a directory to be put into on app level – therefore sometimes there might be an asset directory instead of a static directory or the other way around.
It'd be great to have one directory and in the best case that would include not having `.jsx` files in that django-generated, global `/static` directory.
</issue>
<code>
[start of apps/dashboard/blueprints.py]
1 from collections import namedtuple
2
3 from django.utils.translation import ugettext_lazy as _
4
5 from apps.bplan import phases as bplan_phases
6 from apps.budgeting import phases as budgeting_phases
7 from apps.documents import phases as documents_phases
8 from apps.extprojects import phases as extprojects_phases
9 from apps.ideas import phases as ideas_phases
10 from apps.kiezkasse import phases as kiezkasse_phases
11 from apps.mapideas import phases as mapideas_phases
12 from apps.polls import phases as poll_phases
13 from apps.topicprio import phases as topicprio_phases
14
15 ProjectBlueprint = namedtuple(
16 'ProjectBlueprint', [
17 'title', 'description', 'content', 'image', 'settings_model'
18 ]
19 )
20
21 blueprints = [
22 ('brainstorming',
23 ProjectBlueprint(
24 title=_('Brainstorming'),
25 description=_(
26 'Collect first ideas for a specific topic and comment on them.'
27 ),
28 content=[
29 ideas_phases.CollectPhase(),
30 ],
31 image='images/blueprints/brainstorming.svg',
32 settings_model=None,
33 )),
34 ('map-brainstorming',
35 ProjectBlueprint(
36 title=_('Spatial Brainstorming'),
37 description=_(
38 'Collect location specific ideas for a topic and comment on them.'
39 ),
40 content=[
41 mapideas_phases.CollectPhase(),
42 ],
43 image='images/blueprints/map-brainstorming.svg',
44 settings_model=('a4maps', 'AreaSettings'),
45 )),
46 ('map-idea-collection',
47 ProjectBlueprint(
48 title=_('Spatial Idea Collection'),
49 description=_(
50 'Collect location specific ideas that can be rated and commented.'
51 ),
52 content=[
53 mapideas_phases.CollectPhase(),
54 mapideas_phases.RatingPhase()
55 ],
56 image='images/blueprints/map-idea-collection.svg',
57 settings_model=('a4maps', 'AreaSettings'),
58 )),
59 ('agenda-setting',
60 ProjectBlueprint(
61 title=_('Agenda Setting'),
62 description=_(
63 'With Agenda-Setting it’s possible to identify topics and to '
64 'define mission statements. Afterwards anyone can comment and '
65 'rate on different topics.'
66 ),
67 content=[
68 ideas_phases.CollectPhase(),
69 ideas_phases.RatingPhase(),
70 ],
71 image='images/blueprints/agenda-setting.svg',
72 settings_model=None,
73 )),
74 ('text-review',
75 ProjectBlueprint(
76 title=_('Text Review'),
77 description=_(
78 'In the text-review it’s possible to structure draft texts '
79 'that can be commented.'
80 ),
81 content=[
82 documents_phases.CommentPhase(),
83 ],
84 image='images/blueprints/text-review.svg',
85 settings_model=None,
86 )),
87 ('participatory-budgeting',
88 ProjectBlueprint(
89 title=_('Participatory budgeting'),
90 description=_(
91 'With participatory-budgeting it’s possible to make proposals '
92 'with budget specifications and locate them. Anyone can comment '
93 'and rate on different proposals.'
94 ),
95 content=[
96 budgeting_phases.RequestPhase()
97 ],
98 image='images/blueprints/participatory-budgeting.svg',
99 settings_model=('a4maps', 'AreaSettings'),
100 )),
101 ('external-project',
102 ProjectBlueprint(
103 title=_('External project'),
104 description=_(
105 'External projects are handled on a different platform.'
106 ),
107 content=[
108 extprojects_phases.ExternalPhase(),
109 ],
110 image='images/blueprints/external-project.svg',
111 settings_model=None,
112 )),
113 ('poll',
114 ProjectBlueprint(
115 title=_('Poll'),
116 description=_(
117 'Create a poll with multiple questions and possible answers. '
118 'Anyone can cast votes and comment on the poll.'
119 ),
120 content=[
121 poll_phases.VotingPhase(),
122 ],
123 image='images/blueprints/poll.svg',
124 settings_model=None,
125 )),
126 ('topic-prioritization',
127 ProjectBlueprint(
128 title=_('Topic Prioritization'),
129 description=_(
130 'Comment and prioritize topics.'
131 ),
132 content=[
133 topicprio_phases.PrioritizePhase(),
134 ],
135 image='images/blueprints/priorization.svg',
136 settings_model=None,
137 )),
138 ('bplan',
139 ProjectBlueprint(
140 title=_('Development Plan'),
141 description=_('Create a statement formular for development plans'
142 ' to be embedded on external sites.'),
143 content=[
144 bplan_phases.StatementPhase(),
145 ],
146 image='images/blueprints/bplan.svg',
147 settings_model=None,
148 )),
149 ('kiezkasse',
150 ProjectBlueprint(
151 title=_('Kiezkasse'),
152 description=_(
153 'With kiezkasse it’s possible to make proposals '
154 'with budget specifications and locate them. '
155 'The proposals can be commented and rated.'
156 ),
157 content=[
158 kiezkasse_phases.RequestFeedbackPhase(),
159 ],
160 image='images/blueprints/kiezkasse.svg',
161 settings_model=('a4maps', 'AreaSettings'),
162 )),
163 ]
164
165
166 class BlueprintMixin:
167 @property
168 def blueprint(self):
169 return dict(blueprints)[self.blueprint_key]
170
171 @property
172 def blueprint_key(self):
173 return self.kwargs['blueprint_slug']
174
[end of apps/dashboard/blueprints.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/apps/dashboard/blueprints.py b/apps/dashboard/blueprints.py
--- a/apps/dashboard/blueprints.py
+++ b/apps/dashboard/blueprints.py
@@ -28,7 +28,7 @@
content=[
ideas_phases.CollectPhase(),
],
- image='images/blueprints/brainstorming.svg',
+ image='images/brainstorming.svg',
settings_model=None,
)),
('map-brainstorming',
@@ -40,7 +40,7 @@
content=[
mapideas_phases.CollectPhase(),
],
- image='images/blueprints/map-brainstorming.svg',
+ image='images/map-brainstorming.svg',
settings_model=('a4maps', 'AreaSettings'),
)),
('map-idea-collection',
@@ -53,7 +53,7 @@
mapideas_phases.CollectPhase(),
mapideas_phases.RatingPhase()
],
- image='images/blueprints/map-idea-collection.svg',
+ image='images/map-idea-collection.svg',
settings_model=('a4maps', 'AreaSettings'),
)),
('agenda-setting',
@@ -68,7 +68,7 @@
ideas_phases.CollectPhase(),
ideas_phases.RatingPhase(),
],
- image='images/blueprints/agenda-setting.svg',
+ image='images/agenda-setting.svg',
settings_model=None,
)),
('text-review',
@@ -81,7 +81,7 @@
content=[
documents_phases.CommentPhase(),
],
- image='images/blueprints/text-review.svg',
+ image='images/text-review.svg',
settings_model=None,
)),
('participatory-budgeting',
@@ -95,7 +95,7 @@
content=[
budgeting_phases.RequestPhase()
],
- image='images/blueprints/participatory-budgeting.svg',
+ image='images/participatory-budgeting.svg',
settings_model=('a4maps', 'AreaSettings'),
)),
('external-project',
@@ -107,7 +107,7 @@
content=[
extprojects_phases.ExternalPhase(),
],
- image='images/blueprints/external-project.svg',
+ image='images/external-project.svg',
settings_model=None,
)),
('poll',
@@ -120,7 +120,7 @@
content=[
poll_phases.VotingPhase(),
],
- image='images/blueprints/poll.svg',
+ image='images/poll.svg',
settings_model=None,
)),
('topic-prioritization',
@@ -132,7 +132,7 @@
content=[
topicprio_phases.PrioritizePhase(),
],
- image='images/blueprints/priorization.svg',
+ image='images/priorization.svg',
settings_model=None,
)),
('bplan',
@@ -143,7 +143,7 @@
content=[
bplan_phases.StatementPhase(),
],
- image='images/blueprints/bplan.svg',
+ image='images/bplan.svg',
settings_model=None,
)),
('kiezkasse',
@@ -157,7 +157,7 @@
content=[
kiezkasse_phases.RequestFeedbackPhase(),
],
- image='images/blueprints/kiezkasse.svg',
+ image='images/kiezkasse.svg',
settings_model=('a4maps', 'AreaSettings'),
)),
]
| {"golden_diff": "diff --git a/apps/dashboard/blueprints.py b/apps/dashboard/blueprints.py\n--- a/apps/dashboard/blueprints.py\n+++ b/apps/dashboard/blueprints.py\n@@ -28,7 +28,7 @@\n content=[\n ideas_phases.CollectPhase(),\n ],\n- image='images/blueprints/brainstorming.svg',\n+ image='images/brainstorming.svg',\n settings_model=None,\n )),\n ('map-brainstorming',\n@@ -40,7 +40,7 @@\n content=[\n mapideas_phases.CollectPhase(),\n ],\n- image='images/blueprints/map-brainstorming.svg',\n+ image='images/map-brainstorming.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ('map-idea-collection',\n@@ -53,7 +53,7 @@\n mapideas_phases.CollectPhase(),\n mapideas_phases.RatingPhase()\n ],\n- image='images/blueprints/map-idea-collection.svg',\n+ image='images/map-idea-collection.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ('agenda-setting',\n@@ -68,7 +68,7 @@\n ideas_phases.CollectPhase(),\n ideas_phases.RatingPhase(),\n ],\n- image='images/blueprints/agenda-setting.svg',\n+ image='images/agenda-setting.svg',\n settings_model=None,\n )),\n ('text-review',\n@@ -81,7 +81,7 @@\n content=[\n documents_phases.CommentPhase(),\n ],\n- image='images/blueprints/text-review.svg',\n+ image='images/text-review.svg',\n settings_model=None,\n )),\n ('participatory-budgeting',\n@@ -95,7 +95,7 @@\n content=[\n budgeting_phases.RequestPhase()\n ],\n- image='images/blueprints/participatory-budgeting.svg',\n+ image='images/participatory-budgeting.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ('external-project',\n@@ -107,7 +107,7 @@\n content=[\n extprojects_phases.ExternalPhase(),\n ],\n- image='images/blueprints/external-project.svg',\n+ image='images/external-project.svg',\n settings_model=None,\n )),\n ('poll',\n@@ -120,7 +120,7 @@\n content=[\n poll_phases.VotingPhase(),\n ],\n- image='images/blueprints/poll.svg',\n+ image='images/poll.svg',\n settings_model=None,\n )),\n ('topic-prioritization',\n@@ -132,7 +132,7 @@\n content=[\n topicprio_phases.PrioritizePhase(),\n ],\n- image='images/blueprints/priorization.svg',\n+ image='images/priorization.svg',\n settings_model=None,\n )),\n ('bplan',\n@@ -143,7 +143,7 @@\n content=[\n bplan_phases.StatementPhase(),\n ],\n- image='images/blueprints/bplan.svg',\n+ image='images/bplan.svg',\n settings_model=None,\n )),\n ('kiezkasse',\n@@ -157,7 +157,7 @@\n content=[\n kiezkasse_phases.RequestFeedbackPhase(),\n ],\n- image='images/blueprints/kiezkasse.svg',\n+ image='images/kiezkasse.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ]\n", "issue": "Static/Assets directories in apps\nDjango says to include app specific static files in a `/static` directory in the root of the particular app (https://docs.djangoproject.com/en/1.11/howto/static-files/). On `runserver` Django collects static files from the project wide static directory (mentioned in base.py) and the `/static` directories within all apps, grouping them into one global `/static` directory.\r\nNow, we don't need `.jsx` files in that global `/static` directory since they are required and put together into one file by webpack. Still, those files need a directory to be put into on app level \u2013 therefore sometimes there might be an asset directory instead of a static directory or the other way around.\r\nIt'd be great to have one directory and in the best case that would include not having `.jsx` files in that django-generated, global `/static` directory.\n", "before_files": [{"content": "from collections import namedtuple\n\nfrom django.utils.translation import ugettext_lazy as _\n\nfrom apps.bplan import phases as bplan_phases\nfrom apps.budgeting import phases as budgeting_phases\nfrom apps.documents import phases as documents_phases\nfrom apps.extprojects import phases as extprojects_phases\nfrom apps.ideas import phases as ideas_phases\nfrom apps.kiezkasse import phases as kiezkasse_phases\nfrom apps.mapideas import phases as mapideas_phases\nfrom apps.polls import phases as poll_phases\nfrom apps.topicprio import phases as topicprio_phases\n\nProjectBlueprint = namedtuple(\n 'ProjectBlueprint', [\n 'title', 'description', 'content', 'image', 'settings_model'\n ]\n)\n\nblueprints = [\n ('brainstorming',\n ProjectBlueprint(\n title=_('Brainstorming'),\n description=_(\n 'Collect first ideas for a specific topic and comment on them.'\n ),\n content=[\n ideas_phases.CollectPhase(),\n ],\n image='images/blueprints/brainstorming.svg',\n settings_model=None,\n )),\n ('map-brainstorming',\n ProjectBlueprint(\n title=_('Spatial Brainstorming'),\n description=_(\n 'Collect location specific ideas for a topic and comment on them.'\n ),\n content=[\n mapideas_phases.CollectPhase(),\n ],\n image='images/blueprints/map-brainstorming.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ('map-idea-collection',\n ProjectBlueprint(\n title=_('Spatial Idea Collection'),\n description=_(\n 'Collect location specific ideas that can be rated and commented.'\n ),\n content=[\n mapideas_phases.CollectPhase(),\n mapideas_phases.RatingPhase()\n ],\n image='images/blueprints/map-idea-collection.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ('agenda-setting',\n ProjectBlueprint(\n title=_('Agenda Setting'),\n description=_(\n 'With Agenda-Setting it\u2019s possible to identify topics and to '\n 'define mission statements. Afterwards anyone can comment and '\n 'rate on different topics.'\n ),\n content=[\n ideas_phases.CollectPhase(),\n ideas_phases.RatingPhase(),\n ],\n image='images/blueprints/agenda-setting.svg',\n settings_model=None,\n )),\n ('text-review',\n ProjectBlueprint(\n title=_('Text Review'),\n description=_(\n 'In the text-review it\u2019s possible to structure draft texts '\n 'that can be commented.'\n ),\n content=[\n documents_phases.CommentPhase(),\n ],\n image='images/blueprints/text-review.svg',\n settings_model=None,\n )),\n ('participatory-budgeting',\n ProjectBlueprint(\n title=_('Participatory budgeting'),\n description=_(\n 'With participatory-budgeting it\u2019s possible to make proposals '\n 'with budget specifications and locate them. Anyone can comment '\n 'and rate on different proposals.'\n ),\n content=[\n budgeting_phases.RequestPhase()\n ],\n image='images/blueprints/participatory-budgeting.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n ('external-project',\n ProjectBlueprint(\n title=_('External project'),\n description=_(\n 'External projects are handled on a different platform.'\n ),\n content=[\n extprojects_phases.ExternalPhase(),\n ],\n image='images/blueprints/external-project.svg',\n settings_model=None,\n )),\n ('poll',\n ProjectBlueprint(\n title=_('Poll'),\n description=_(\n 'Create a poll with multiple questions and possible answers. '\n 'Anyone can cast votes and comment on the poll.'\n ),\n content=[\n poll_phases.VotingPhase(),\n ],\n image='images/blueprints/poll.svg',\n settings_model=None,\n )),\n ('topic-prioritization',\n ProjectBlueprint(\n title=_('Topic Prioritization'),\n description=_(\n 'Comment and prioritize topics.'\n ),\n content=[\n topicprio_phases.PrioritizePhase(),\n ],\n image='images/blueprints/priorization.svg',\n settings_model=None,\n )),\n ('bplan',\n ProjectBlueprint(\n title=_('Development Plan'),\n description=_('Create a statement formular for development plans'\n ' to be embedded on external sites.'),\n content=[\n bplan_phases.StatementPhase(),\n ],\n image='images/blueprints/bplan.svg',\n settings_model=None,\n )),\n ('kiezkasse',\n ProjectBlueprint(\n title=_('Kiezkasse'),\n description=_(\n 'With kiezkasse it\u2019s possible to make proposals '\n 'with budget specifications and locate them. '\n 'The proposals can be commented and rated.'\n ),\n content=[\n kiezkasse_phases.RequestFeedbackPhase(),\n ],\n image='images/blueprints/kiezkasse.svg',\n settings_model=('a4maps', 'AreaSettings'),\n )),\n]\n\n\nclass BlueprintMixin:\n @property\n def blueprint(self):\n return dict(blueprints)[self.blueprint_key]\n\n @property\n def blueprint_key(self):\n return self.kwargs['blueprint_slug']\n", "path": "apps/dashboard/blueprints.py"}]} | 2,222 | 753 |
gh_patches_debug_2805 | rasdani/github-patches | git_diff | python-poetry__poetry-2750 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
1.1.0b2 causes EnvCommandError (Non-posix paths with file:// protocol on Windows)
<!--
Hi there! Thank you for discovering and submitting an issue.
Before you submit this; let's make sure of a few things.
Please make sure the following boxes are ticked if they are correct.
If not, please try and fulfill these first.
-->
<!-- Checked checkbox should look like this: [x] -->
- [x] I am on the [latest](https://github.com/python-poetry/poetry/releases/latest) Poetry version.
- [x] I have searched the [issues](https://github.com/python-poetry/poetry/issues) of this repo and believe that this is not a duplicate.
- [x] If an exception occurs when executing a command, I executed it again in debug mode (`-vvv` option).
<!--
Once those are done, if you're able to fill in the following list with your information,
it'd be very helpful to whoever handles the issue.
-->
- **OS version and name**: Windows 10
- **Poetry version**: 1.1.0b2
- **Link of a [Gist](https://gist.github.com/) with the contents of your pyproject.toml file**: <!-- Gist Link Here -->
## Issue
When on Poetry 1.0.10 there are no issues. But after having updated to poetry 1.1.0b2, I constantly get an EnvCommandError caused by a FileNotFoundError (a temporary setup.py file is not found):
```bash
$ poetry --version
Poetry version 1.1.0b2
$ poetry lock
Updating dependencies
Resolving dependencies...
Writing lock file
$ poetry install -vvv
Using virtualenv: C:\Users\fredrik\code\repos\mylittleci\venv
Installing dependencies from lock file
Finding the necessary packages for the current system
Package operations: 2 installs, 0 updates, 0 removals
• Installing zipp (3.1.0)
Stack trace:
7 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\installation\executor.py:183 in _execute_operation
181│
182│ try:
→ 183│ result = self._do_execute_operation(operation)
184│ except EnvCommandError as e:
185│ if e.e.returncode == -2:
6 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\installation\executor.py:257 in _do_execute_operation
255│ return 0
256│
→ 257│ result = getattr(self, "_execute_{}".format(method))(operation)
258│
259│ if result != 0:
5 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\installation\executor.py:394 in _execute_install
392│
393│ def _execute_install(self, operation): # type: (Install) -> None
→ 394│ return self._install(operation)
395│
396│ def _execute_update(self, operation): # type: (Update) -> None
4 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\installation\executor.py:432 in _install
430│ args.insert(2, "-U")
431│
→ 432│ return self.run_pip(*args)
433│
434│ def _update(self, operation):
3 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\installation\executor.py:283 in run_pip
281│ def run_pip(self, *args, **kwargs): # type: (...) -> int
282│ try:
→ 283│ self._env.run_pip(*args, **kwargs)
284│ except EnvCommandError as e:
285│ output = decode(e.e.output)
2 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\utils\env.py:883 in run_pip
881│ pip = self.get_pip_command()
882│ cmd = pip + list(args)
→ 883│ return self._run(cmd, **kwargs)
884│
885│ def _run(self, cmd, **kwargs):
1 c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\utils\env.py:1151 in _run
1149│ self.unset_env("__PYVENV_LAUNCHER__")
1150│
→ 1151│ return super(VirtualEnv, self)._run(cmd, **kwargs)
1152│
1153│ def execute(self, bin, *args, **kwargs):
EnvCommandError
Command C:\Users\fredrik\code\repos\mylittleci\venv\Scripts\pip.exe install --no-deps file://C:\Users\fredrik\AppData\Local\pypoetry\Cache\artifacts\3f\29\e0\445941d0045028dce97085f4263281587225a49fa7dd09f41e4c2752af\zipp-3.1.0-py3-none-any.whl errored with the following return code 1, and output:
Processing c:\users\fredrik\appdata\local\pypoetry\cache\artifacts\3f\29\e0\445941d0045028dce97085f4263281587225a49fa7dd09f41e4c2752af\zipp-3.1.0-py3-none-any.whl
ERROR: Command errored out with exit status 1:
command: 'c:\users\fredrik\code\repos\mylittleci\venv\scripts\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'C:\\Users\\fredrik\\AppData\\Local\\Temp\\pip-req-build-gsp4euj0\\setup.py'"'"'; __file__='"'"'C:\\Users\\fredrik\\AppData\\Local\\Temp\\pip-req-build-gsp4euj0\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base 'C:\Users\fredrik\AppData\Local\Temp\pip-pip-egg-info-_md_1odm'
cwd: C:\Users\fredrik\AppData\Local\Temp\pip-req-build-gsp4euj0\
Complete output (5 lines):
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "C:\Users\fredrik\AppData\Local\Programs\Python\Python37\lib\tokenize.py", line 447, in open
buffer = _builtin_open(filename, 'rb')
FileNotFoundError: [Errno 2] No such file or directory: 'C:\\Users\\fredrik\\AppData\\Local\\Temp\\pip-req-build-gsp4euj0\\setup.py'
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
at c:\users\fredrik\.local\pipx\venvs\poetry\lib\site-packages\poetry\utils\env.py:915 in _run
911│ output = subprocess.check_output(
912│ cmd, stderr=subprocess.STDOUT, **kwargs
913│ )
914│ except CalledProcessError as e:
→ 915│ raise EnvCommandError(e, input=input_)
916│
917│ return decode(output)
918│
919│ def execute(self, bin, *args, **kwargs):
```
The contents of my `pyproject.toml`:
```
[tool.poetry]
name = "mylittleci"
version = "0.0.1"
authors = ["Fredrik <***@***.***>"]
description = "mylittleci"
[tool.poetry.dependencies]
python = "^3.7"
[tool.poetry.dev-dependencies]
importlib_metadata = "^1.7.0"
[tool.poetry.scripts]
calculator = "mylittleci.cli.calculator:main"
[build-system]
# https://python-poetry.org/docs/faq/#is-tox-supported
requires = ["poetry-core>=1.0.0a5"]
build-backend = "poetry.core.masonry.api"
```
</issue>
<code>
[start of poetry/installation/chef.py]
1 import hashlib
2 import json
3
4 from typing import TYPE_CHECKING
5
6 from poetry.core.packages.utils.link import Link
7 from poetry.utils._compat import Path
8
9 from .chooser import InvalidWheelName
10 from .chooser import Wheel
11
12
13 if TYPE_CHECKING:
14 from typing import List
15 from typing import Optional
16
17 from poetry.config.config import Config
18 from poetry.utils.env import Env
19
20
21 class Chef:
22 def __init__(self, config, env): # type: (Config, Env) -> None
23 self._config = config
24 self._env = env
25 self._cache_dir = (
26 Path(config.get("cache-dir")).expanduser().joinpath("artifacts")
27 )
28
29 def prepare(self, archive): # type: (Path) -> Path
30 return archive
31
32 def prepare_sdist(self, archive): # type: (Path) -> Path
33 return archive
34
35 def prepare_wheel(self, archive): # type: (Path) -> Path
36 return archive
37
38 def should_prepare(self, archive): # type: (Path) -> bool
39 return not self.is_wheel(archive)
40
41 def is_wheel(self, archive): # type: (Path) -> bool
42 return archive.suffix == ".whl"
43
44 def get_cached_archive_for_link(self, link): # type: (Link) -> Optional[Link]
45 # If the archive is already a wheel, there is no need to cache it.
46 if link.is_wheel:
47 pass
48
49 archives = self.get_cached_archives_for_link(link)
50
51 if not archives:
52 return link
53
54 candidates = []
55 for archive in archives:
56 if not archive.is_wheel:
57 candidates.append((float("inf"), archive))
58 continue
59
60 try:
61 wheel = Wheel(archive.filename)
62 except InvalidWheelName:
63 continue
64
65 if not wheel.is_supported_by_environment(self._env):
66 continue
67
68 candidates.append(
69 (wheel.get_minimum_supported_index(self._env.supported_tags), archive),
70 )
71
72 if not candidates:
73 return link
74
75 return min(candidates)[1]
76
77 def get_cached_archives_for_link(self, link): # type: (Link) -> List[Link]
78 cache_dir = self.get_cache_directory_for_link(link)
79
80 archive_types = ["whl", "tar.gz", "tar.bz2", "bz2", "zip"]
81 links = []
82 for archive_type in archive_types:
83 for archive in cache_dir.glob("*.{}".format(archive_type)):
84 links.append(Link("file://{}".format(str(archive))))
85
86 return links
87
88 def get_cache_directory_for_link(self, link): # type: (Link) -> Path
89 key_parts = {"url": link.url_without_fragment}
90
91 if link.hash_name is not None and link.hash is not None:
92 key_parts[link.hash_name] = link.hash
93
94 if link.subdirectory_fragment:
95 key_parts["subdirectory"] = link.subdirectory_fragment
96
97 key_parts["interpreter_name"] = self._env.marker_env["interpreter_name"]
98 key_parts["interpreter_version"] = "".join(
99 self._env.marker_env["interpreter_version"].split(".")[:2]
100 )
101
102 key = hashlib.sha256(
103 json.dumps(
104 key_parts, sort_keys=True, separators=(",", ":"), ensure_ascii=True
105 ).encode("ascii")
106 ).hexdigest()
107
108 split_key = [key[:2], key[2:4], key[4:6], key[6:]]
109
110 return self._cache_dir.joinpath(*split_key)
111
[end of poetry/installation/chef.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/poetry/installation/chef.py b/poetry/installation/chef.py
--- a/poetry/installation/chef.py
+++ b/poetry/installation/chef.py
@@ -81,7 +81,7 @@
links = []
for archive_type in archive_types:
for archive in cache_dir.glob("*.{}".format(archive_type)):
- links.append(Link("file://{}".format(str(archive))))
+ links.append(Link(archive.as_uri()))
return links
| {"golden_diff": "diff --git a/poetry/installation/chef.py b/poetry/installation/chef.py\n--- a/poetry/installation/chef.py\n+++ b/poetry/installation/chef.py\n@@ -81,7 +81,7 @@\n links = []\n for archive_type in archive_types:\n for archive in cache_dir.glob(\"*.{}\".format(archive_type)):\n- links.append(Link(\"file://{}\".format(str(archive))))\n+ links.append(Link(archive.as_uri()))\n \n return links\n", "issue": "1.1.0b2 causes EnvCommandError (Non-posix paths with file:// protocol on Windows)\n<!--\r\n Hi there! Thank you for discovering and submitting an issue.\r\n\r\n Before you submit this; let's make sure of a few things.\r\n Please make sure the following boxes are ticked if they are correct.\r\n If not, please try and fulfill these first.\r\n-->\r\n\r\n<!-- Checked checkbox should look like this: [x] -->\r\n- [x] I am on the [latest](https://github.com/python-poetry/poetry/releases/latest) Poetry version.\r\n- [x] I have searched the [issues](https://github.com/python-poetry/poetry/issues) of this repo and believe that this is not a duplicate.\r\n- [x] If an exception occurs when executing a command, I executed it again in debug mode (`-vvv` option).\r\n\r\n<!--\r\n Once those are done, if you're able to fill in the following list with your information,\r\n it'd be very helpful to whoever handles the issue.\r\n-->\r\n\r\n- **OS version and name**: Windows 10\r\n- **Poetry version**: 1.1.0b2\r\n- **Link of a [Gist](https://gist.github.com/) with the contents of your pyproject.toml file**: <!-- Gist Link Here -->\r\n\r\n## Issue\r\n\r\nWhen on Poetry 1.0.10 there are no issues. But after having updated to poetry 1.1.0b2, I constantly get an EnvCommandError caused by a FileNotFoundError (a temporary setup.py file is not found):\r\n\r\n```bash\r\n$ poetry --version\r\nPoetry version 1.1.0b2\r\n\r\n$ poetry lock\r\nUpdating dependencies\r\nResolving dependencies...\r\n\r\nWriting lock file\r\n\r\n$ poetry install -vvv \r\nUsing virtualenv: C:\\Users\\fredrik\\code\\repos\\mylittleci\\venv\r\nInstalling dependencies from lock file\r\n\r\nFinding the necessary packages for the current system\r\n\r\nPackage operations: 2 installs, 0 updates, 0 removals\r\n\r\n \u2022 Installing zipp (3.1.0)\r\n\r\n Stack trace:\r\n\r\n 7 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\installation\\executor.py:183 in _execute_operation\r\n 181\u2502\r\n 182\u2502 try:\r\n \u2192 183\u2502 result = self._do_execute_operation(operation)\r\n 184\u2502 except EnvCommandError as e:\r\n 185\u2502 if e.e.returncode == -2:\r\n\r\n 6 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\installation\\executor.py:257 in _do_execute_operation\r\n 255\u2502 return 0\r\n 256\u2502\r\n \u2192 257\u2502 result = getattr(self, \"_execute_{}\".format(method))(operation)\r\n 258\u2502\r\n 259\u2502 if result != 0:\r\n\r\n 5 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\installation\\executor.py:394 in _execute_install\r\n 392\u2502\r\n 393\u2502 def _execute_install(self, operation): # type: (Install) -> None\r\n \u2192 394\u2502 return self._install(operation)\r\n 395\u2502\r\n 396\u2502 def _execute_update(self, operation): # type: (Update) -> None\r\n\r\n 4 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\installation\\executor.py:432 in _install\r\n 430\u2502 args.insert(2, \"-U\")\r\n 431\u2502\r\n \u2192 432\u2502 return self.run_pip(*args)\r\n 433\u2502\r\n 434\u2502 def _update(self, operation):\r\n\r\n 3 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\installation\\executor.py:283 in run_pip\r\n 281\u2502 def run_pip(self, *args, **kwargs): # type: (...) -> int\r\n 282\u2502 try:\r\n \u2192 283\u2502 self._env.run_pip(*args, **kwargs)\r\n 284\u2502 except EnvCommandError as e:\r\n 285\u2502 output = decode(e.e.output)\r\n\r\n 2 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\utils\\env.py:883 in run_pip\r\n 881\u2502 pip = self.get_pip_command()\r\n 882\u2502 cmd = pip + list(args)\r\n \u2192 883\u2502 return self._run(cmd, **kwargs)\r\n 884\u2502\r\n 885\u2502 def _run(self, cmd, **kwargs):\r\n\r\n 1 c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\utils\\env.py:1151 in _run\r\n 1149\u2502 self.unset_env(\"__PYVENV_LAUNCHER__\")\r\n 1150\u2502\r\n \u2192 1151\u2502 return super(VirtualEnv, self)._run(cmd, **kwargs)\r\n 1152\u2502\r\n 1153\u2502 def execute(self, bin, *args, **kwargs):\r\n\r\n EnvCommandError\r\n\r\n Command C:\\Users\\fredrik\\code\\repos\\mylittleci\\venv\\Scripts\\pip.exe install --no-deps file://C:\\Users\\fredrik\\AppData\\Local\\pypoetry\\Cache\\artifacts\\3f\\29\\e0\\445941d0045028dce97085f4263281587225a49fa7dd09f41e4c2752af\\zipp-3.1.0-py3-none-any.whl errored with the following return code 1, and output:\r\n Processing c:\\users\\fredrik\\appdata\\local\\pypoetry\\cache\\artifacts\\3f\\29\\e0\\445941d0045028dce97085f4263281587225a49fa7dd09f41e4c2752af\\zipp-3.1.0-py3-none-any.whl\r\n ERROR: Command errored out with exit status 1:\r\n command: 'c:\\users\\fredrik\\code\\repos\\mylittleci\\venv\\scripts\\python.exe' -c 'import sys, setuptools, tokenize; sys.argv[0] = '\"'\"'C:\\\\Users\\\\fredrik\\\\AppData\\\\Local\\\\Temp\\\\pip-req-build-gsp4euj0\\\\setup.py'\"'\"'; __file__='\"'\"'C:\\\\Users\\\\fredrik\\\\AppData\\\\Local\\\\Temp\\\\pip-req-build-gsp4euj0\\\\setup.py'\"'\"';f=getattr(tokenize, '\"'\"'open'\"'\"', open)(__file__);code=f.read().replace('\"'\"'\\r\\n'\"'\"', '\"'\"'\\n'\"'\"');f.close();exec(compile(code, __file__, '\"'\"'exec'\"'\"'))' egg_info --egg-base 'C:\\Users\\fredrik\\AppData\\Local\\Temp\\pip-pip-egg-info-_md_1odm'\r\n cwd: C:\\Users\\fredrik\\AppData\\Local\\Temp\\pip-req-build-gsp4euj0\\\r\n Complete output (5 lines):\r\n Traceback (most recent call last):\r\n File \"<string>\", line 1, in <module>\r\n File \"C:\\Users\\fredrik\\AppData\\Local\\Programs\\Python\\Python37\\lib\\tokenize.py\", line 447, in open\r\n buffer = _builtin_open(filename, 'rb')\r\n FileNotFoundError: [Errno 2] No such file or directory: 'C:\\\\Users\\\\fredrik\\\\AppData\\\\Local\\\\Temp\\\\pip-req-build-gsp4euj0\\\\setup.py'\r\n ----------------------------------------\r\n ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.\r\n\r\n\r\n at c:\\users\\fredrik\\.local\\pipx\\venvs\\poetry\\lib\\site-packages\\poetry\\utils\\env.py:915 in _run\r\n 911\u2502 output = subprocess.check_output(\r\n 912\u2502 cmd, stderr=subprocess.STDOUT, **kwargs\r\n 913\u2502 )\r\n 914\u2502 except CalledProcessError as e:\r\n \u2192 915\u2502 raise EnvCommandError(e, input=input_)\r\n 916\u2502\r\n 917\u2502 return decode(output)\r\n 918\u2502\r\n 919\u2502 def execute(self, bin, *args, **kwargs):\r\n```\r\n\r\nThe contents of my `pyproject.toml`:\r\n\r\n```\r\n[tool.poetry]\r\nname = \"mylittleci\"\r\nversion = \"0.0.1\"\r\nauthors = [\"Fredrik <***@***.***>\"]\r\ndescription = \"mylittleci\"\r\n\r\n\r\n[tool.poetry.dependencies]\r\npython = \"^3.7\"\r\n\r\n\r\n[tool.poetry.dev-dependencies]\r\nimportlib_metadata = \"^1.7.0\"\r\n\r\n\r\n[tool.poetry.scripts]\r\ncalculator = \"mylittleci.cli.calculator:main\"\r\n\r\n\r\n[build-system]\r\n# https://python-poetry.org/docs/faq/#is-tox-supported\r\nrequires = [\"poetry-core>=1.0.0a5\"]\r\nbuild-backend = \"poetry.core.masonry.api\"\r\n```\r\n\n", "before_files": [{"content": "import hashlib\nimport json\n\nfrom typing import TYPE_CHECKING\n\nfrom poetry.core.packages.utils.link import Link\nfrom poetry.utils._compat import Path\n\nfrom .chooser import InvalidWheelName\nfrom .chooser import Wheel\n\n\nif TYPE_CHECKING:\n from typing import List\n from typing import Optional\n\n from poetry.config.config import Config\n from poetry.utils.env import Env\n\n\nclass Chef:\n def __init__(self, config, env): # type: (Config, Env) -> None\n self._config = config\n self._env = env\n self._cache_dir = (\n Path(config.get(\"cache-dir\")).expanduser().joinpath(\"artifacts\")\n )\n\n def prepare(self, archive): # type: (Path) -> Path\n return archive\n\n def prepare_sdist(self, archive): # type: (Path) -> Path\n return archive\n\n def prepare_wheel(self, archive): # type: (Path) -> Path\n return archive\n\n def should_prepare(self, archive): # type: (Path) -> bool\n return not self.is_wheel(archive)\n\n def is_wheel(self, archive): # type: (Path) -> bool\n return archive.suffix == \".whl\"\n\n def get_cached_archive_for_link(self, link): # type: (Link) -> Optional[Link]\n # If the archive is already a wheel, there is no need to cache it.\n if link.is_wheel:\n pass\n\n archives = self.get_cached_archives_for_link(link)\n\n if not archives:\n return link\n\n candidates = []\n for archive in archives:\n if not archive.is_wheel:\n candidates.append((float(\"inf\"), archive))\n continue\n\n try:\n wheel = Wheel(archive.filename)\n except InvalidWheelName:\n continue\n\n if not wheel.is_supported_by_environment(self._env):\n continue\n\n candidates.append(\n (wheel.get_minimum_supported_index(self._env.supported_tags), archive),\n )\n\n if not candidates:\n return link\n\n return min(candidates)[1]\n\n def get_cached_archives_for_link(self, link): # type: (Link) -> List[Link]\n cache_dir = self.get_cache_directory_for_link(link)\n\n archive_types = [\"whl\", \"tar.gz\", \"tar.bz2\", \"bz2\", \"zip\"]\n links = []\n for archive_type in archive_types:\n for archive in cache_dir.glob(\"*.{}\".format(archive_type)):\n links.append(Link(\"file://{}\".format(str(archive))))\n\n return links\n\n def get_cache_directory_for_link(self, link): # type: (Link) -> Path\n key_parts = {\"url\": link.url_without_fragment}\n\n if link.hash_name is not None and link.hash is not None:\n key_parts[link.hash_name] = link.hash\n\n if link.subdirectory_fragment:\n key_parts[\"subdirectory\"] = link.subdirectory_fragment\n\n key_parts[\"interpreter_name\"] = self._env.marker_env[\"interpreter_name\"]\n key_parts[\"interpreter_version\"] = \"\".join(\n self._env.marker_env[\"interpreter_version\"].split(\".\")[:2]\n )\n\n key = hashlib.sha256(\n json.dumps(\n key_parts, sort_keys=True, separators=(\",\", \":\"), ensure_ascii=True\n ).encode(\"ascii\")\n ).hexdigest()\n\n split_key = [key[:2], key[2:4], key[4:6], key[6:]]\n\n return self._cache_dir.joinpath(*split_key)\n", "path": "poetry/installation/chef.py"}]} | 3,730 | 112 |
gh_patches_debug_15251 | rasdani/github-patches | git_diff | Mailu__Mailu-1337 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Roundcube managesieve fails on IPv6
I have assigned a globally-routable IPv6 network to the docker-compose stack. Rainloop sieve management works correctly but Roundcube fails. Looking at the logs, Roundcube attempts to connect to sieve via IPv6. Hard-coding $imap to the IPv4 address of the imap docker container allows Roundcube sieve to function properly. I believe it is related to this in the debug log of imap:
`DEBUG:root:Table get passdb/[username redated] is {'allow_nets': '192.168.203.0/24', 'nopassword': 'Y', 'password': None}`
Using version 1.7.
</issue>
<code>
[start of core/admin/mailu/internal/views/dovecot.py]
1 from mailu import models
2 from mailu.internal import internal
3 from flask import current_app as app
4
5 import flask
6 import socket
7 import os
8
9 @internal.route("/dovecot/passdb/<path:user_email>")
10 def dovecot_passdb_dict(user_email):
11 user = models.User.query.get(user_email) or flask.abort(404)
12 allow_nets = []
13 allow_nets.append(app.config["SUBNET"])
14 if app.config["POD_ADDRESS_RANGE"]:
15 allow_nets.append(app.config["POD_ADDRESS_RANGE"])
16 return flask.jsonify({
17 "password": None,
18 "nopassword": "Y",
19 "allow_nets": ",".join(allow_nets)
20 })
21
22
23 @internal.route("/dovecot/userdb/<path:user_email>")
24 def dovecot_userdb_dict(user_email):
25 user = models.User.query.get(user_email) or flask.abort(404)
26 return flask.jsonify({
27 "quota_rule": "*:bytes={}".format(user.quota_bytes)
28 })
29
30
31 @internal.route("/dovecot/quota/<ns>/<path:user_email>", methods=["POST"])
32 def dovecot_quota(ns, user_email):
33 user = models.User.query.get(user_email) or flask.abort(404)
34 if ns == "storage":
35 user.quota_bytes_used = flask.request.get_json()
36 models.db.session.commit()
37 return flask.jsonify(None)
38
39
40 @internal.route("/dovecot/sieve/name/<script>/<path:user_email>")
41 def dovecot_sieve_name(script, user_email):
42 return flask.jsonify(script)
43
44
45 @internal.route("/dovecot/sieve/data/default/<path:user_email>")
46 def dovecot_sieve_data(user_email):
47 user = models.User.query.get(user_email) or flask.abort(404)
48 return flask.jsonify(flask.render_template("default.sieve", user=user))
49
[end of core/admin/mailu/internal/views/dovecot.py]
[start of core/admin/mailu/configuration.py]
1 import os
2
3 from socrate import system
4
5 DEFAULT_CONFIG = {
6 # Specific to the admin UI
7 'DOCKER_SOCKET': 'unix:///var/run/docker.sock',
8 'BABEL_DEFAULT_LOCALE': 'en',
9 'BABEL_DEFAULT_TIMEZONE': 'UTC',
10 'BOOTSTRAP_SERVE_LOCAL': True,
11 'RATELIMIT_STORAGE_URL': '',
12 'QUOTA_STORAGE_URL': '',
13 'DEBUG': False,
14 'DOMAIN_REGISTRATION': False,
15 'TEMPLATES_AUTO_RELOAD': True,
16 # Database settings
17 'DB_FLAVOR': None,
18 'DB_USER': 'mailu',
19 'DB_PW': None,
20 'DB_HOST': 'database',
21 'DB_NAME': 'mailu',
22 'SQLITE_DATABASE_FILE':'data/main.db',
23 'SQLALCHEMY_DATABASE_URI': 'sqlite:////data/main.db',
24 'SQLALCHEMY_TRACK_MODIFICATIONS': False,
25 # Statistics management
26 'INSTANCE_ID_PATH': '/data/instance',
27 'STATS_ENDPOINT': '0.{}.stats.mailu.io',
28 # Common configuration variables
29 'SECRET_KEY': 'changeMe',
30 'DOMAIN': 'mailu.io',
31 'HOSTNAMES': 'mail.mailu.io,alternative.mailu.io,yetanother.mailu.io',
32 'POSTMASTER': 'postmaster',
33 'TLS_FLAVOR': 'cert',
34 'AUTH_RATELIMIT': '10/minute;1000/hour',
35 'AUTH_RATELIMIT_SUBNET': True,
36 'DISABLE_STATISTICS': False,
37 # Mail settings
38 'DMARC_RUA': None,
39 'DMARC_RUF': None,
40 'WELCOME': False,
41 'WELCOME_SUBJECT': 'Dummy welcome topic',
42 'WELCOME_BODY': 'Dummy welcome body',
43 'DKIM_SELECTOR': 'dkim',
44 'DKIM_PATH': '/dkim/{domain}.{selector}.key',
45 'DEFAULT_QUOTA': 1000000000,
46 # Web settings
47 'SITENAME': 'Mailu',
48 'WEBSITE': 'https://mailu.io',
49 'WEB_ADMIN': '/admin',
50 'WEB_WEBMAIL': '/webmail',
51 'WEBMAIL': 'none',
52 'RECAPTCHA_PUBLIC_KEY': '',
53 'RECAPTCHA_PRIVATE_KEY': '',
54 # Advanced settings
55 'PASSWORD_SCHEME': 'PBKDF2',
56 'LOG_LEVEL': 'WARNING',
57 # Host settings
58 'HOST_IMAP': 'imap',
59 'HOST_LMTP': 'imap:2525',
60 'HOST_POP3': 'imap',
61 'HOST_SMTP': 'smtp',
62 'HOST_AUTHSMTP': 'smtp',
63 'HOST_ADMIN': 'admin',
64 'WEBMAIL': 'none',
65 'HOST_WEBMAIL': 'webmail',
66 'HOST_WEBDAV': 'webdav:5232',
67 'HOST_REDIS': 'redis',
68 'HOST_FRONT': 'front',
69 'SUBNET': '192.168.203.0/24',
70 'POD_ADDRESS_RANGE': None
71 }
72
73 class ConfigManager(dict):
74 """ Naive configuration manager that uses environment only
75 """
76
77 DB_TEMPLATES = {
78 'sqlite': 'sqlite:////{SQLITE_DATABASE_FILE}',
79 'postgresql': 'postgresql://{DB_USER}:{DB_PW}@{DB_HOST}/{DB_NAME}',
80 'mysql': 'mysql://{DB_USER}:{DB_PW}@{DB_HOST}/{DB_NAME}'
81 }
82
83 def __init__(self):
84 self.config = dict()
85
86 def get_host_address(self, name):
87 # if MYSERVICE_ADDRESS is defined, use this
88 if '{}_ADDRESS'.format(name) in os.environ:
89 return os.environ.get('{}_ADDRESS'.format(name))
90 # otherwise use the host name and resolve it
91 return system.resolve_address(self.config['HOST_{}'.format(name)])
92
93 def resolve_hosts(self):
94 self.config["IMAP_ADDRESS"] = self.get_host_address("IMAP")
95 self.config["POP3_ADDRESS"] = self.get_host_address("POP3")
96 self.config["AUTHSMTP_ADDRESS"] = self.get_host_address("AUTHSMTP")
97 self.config["SMTP_ADDRESS"] = self.get_host_address("SMTP")
98 self.config["REDIS_ADDRESS"] = self.get_host_address("REDIS")
99 if self.config["WEBMAIL"] != "none":
100 self.config["WEBMAIL_ADDRESS"] = self.get_host_address("WEBMAIL")
101
102 def __coerce_value(self, value):
103 if isinstance(value, str) and value.lower() in ('true','yes'):
104 return True
105 elif isinstance(value, str) and value.lower() in ('false', 'no'):
106 return False
107 return value
108
109 def init_app(self, app):
110 self.config.update(app.config)
111 # get environment variables
112 self.config.update({
113 key: self.__coerce_value(os.environ.get(key, value))
114 for key, value in DEFAULT_CONFIG.items()
115 })
116 self.resolve_hosts()
117
118 # automatically set the sqlalchemy string
119 if self.config['DB_FLAVOR']:
120 template = self.DB_TEMPLATES[self.config['DB_FLAVOR']]
121 self.config['SQLALCHEMY_DATABASE_URI'] = template.format(**self.config)
122
123 self.config['RATELIMIT_STORAGE_URL'] = 'redis://{0}/2'.format(self.config['REDIS_ADDRESS'])
124 self.config['QUOTA_STORAGE_URL'] = 'redis://{0}/1'.format(self.config['REDIS_ADDRESS'])
125 # update the app config itself
126 app.config = self
127
128 def setdefault(self, key, value):
129 if key not in self.config:
130 self.config[key] = value
131 return self.config[key]
132
133 def get(self, *args):
134 return self.config.get(*args)
135
136 def keys(self):
137 return self.config.keys()
138
139 def __getitem__(self, key):
140 return self.config.get(key)
141
142 def __setitem__(self, key, value):
143 self.config[key] = value
144
145 def __contains__(self, key):
146 return key in self.config
147
[end of core/admin/mailu/configuration.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/core/admin/mailu/configuration.py b/core/admin/mailu/configuration.py
--- a/core/admin/mailu/configuration.py
+++ b/core/admin/mailu/configuration.py
@@ -67,6 +67,7 @@
'HOST_REDIS': 'redis',
'HOST_FRONT': 'front',
'SUBNET': '192.168.203.0/24',
+ 'SUBNET6': None,
'POD_ADDRESS_RANGE': None
}
diff --git a/core/admin/mailu/internal/views/dovecot.py b/core/admin/mailu/internal/views/dovecot.py
--- a/core/admin/mailu/internal/views/dovecot.py
+++ b/core/admin/mailu/internal/views/dovecot.py
@@ -11,6 +11,8 @@
user = models.User.query.get(user_email) or flask.abort(404)
allow_nets = []
allow_nets.append(app.config["SUBNET"])
+ if app.config["SUBNET6"]:
+ allow_nets.append(app.config["SUBNET6"])
if app.config["POD_ADDRESS_RANGE"]:
allow_nets.append(app.config["POD_ADDRESS_RANGE"])
return flask.jsonify({
| {"golden_diff": "diff --git a/core/admin/mailu/configuration.py b/core/admin/mailu/configuration.py\n--- a/core/admin/mailu/configuration.py\n+++ b/core/admin/mailu/configuration.py\n@@ -67,6 +67,7 @@\n 'HOST_REDIS': 'redis',\n 'HOST_FRONT': 'front',\n 'SUBNET': '192.168.203.0/24',\n+ 'SUBNET6': None,\n 'POD_ADDRESS_RANGE': None\n }\n \ndiff --git a/core/admin/mailu/internal/views/dovecot.py b/core/admin/mailu/internal/views/dovecot.py\n--- a/core/admin/mailu/internal/views/dovecot.py\n+++ b/core/admin/mailu/internal/views/dovecot.py\n@@ -11,6 +11,8 @@\n user = models.User.query.get(user_email) or flask.abort(404)\n allow_nets = []\n allow_nets.append(app.config[\"SUBNET\"])\n+ if app.config[\"SUBNET6\"]:\n+ allow_nets.append(app.config[\"SUBNET6\"])\n if app.config[\"POD_ADDRESS_RANGE\"]:\n allow_nets.append(app.config[\"POD_ADDRESS_RANGE\"])\n return flask.jsonify({\n", "issue": "Roundcube managesieve fails on IPv6\nI have assigned a globally-routable IPv6 network to the docker-compose stack. Rainloop sieve management works correctly but Roundcube fails. Looking at the logs, Roundcube attempts to connect to sieve via IPv6. Hard-coding $imap to the IPv4 address of the imap docker container allows Roundcube sieve to function properly. I believe it is related to this in the debug log of imap:\r\n\r\n`DEBUG:root:Table get passdb/[username redated] is {'allow_nets': '192.168.203.0/24', 'nopassword': 'Y', 'password': None}`\r\n\r\nUsing version 1.7.\r\n\n", "before_files": [{"content": "from mailu import models\nfrom mailu.internal import internal\nfrom flask import current_app as app\n\nimport flask\nimport socket\nimport os\n\[email protected](\"/dovecot/passdb/<path:user_email>\")\ndef dovecot_passdb_dict(user_email):\n user = models.User.query.get(user_email) or flask.abort(404)\n allow_nets = []\n allow_nets.append(app.config[\"SUBNET\"])\n if app.config[\"POD_ADDRESS_RANGE\"]:\n allow_nets.append(app.config[\"POD_ADDRESS_RANGE\"])\n return flask.jsonify({\n \"password\": None,\n \"nopassword\": \"Y\",\n \"allow_nets\": \",\".join(allow_nets)\n })\n\n\[email protected](\"/dovecot/userdb/<path:user_email>\")\ndef dovecot_userdb_dict(user_email):\n user = models.User.query.get(user_email) or flask.abort(404)\n return flask.jsonify({\n \"quota_rule\": \"*:bytes={}\".format(user.quota_bytes)\n })\n\n\[email protected](\"/dovecot/quota/<ns>/<path:user_email>\", methods=[\"POST\"])\ndef dovecot_quota(ns, user_email):\n user = models.User.query.get(user_email) or flask.abort(404)\n if ns == \"storage\":\n user.quota_bytes_used = flask.request.get_json()\n models.db.session.commit()\n return flask.jsonify(None)\n\n\[email protected](\"/dovecot/sieve/name/<script>/<path:user_email>\")\ndef dovecot_sieve_name(script, user_email):\n return flask.jsonify(script)\n\n\[email protected](\"/dovecot/sieve/data/default/<path:user_email>\")\ndef dovecot_sieve_data(user_email):\n user = models.User.query.get(user_email) or flask.abort(404)\n return flask.jsonify(flask.render_template(\"default.sieve\", user=user))\n", "path": "core/admin/mailu/internal/views/dovecot.py"}, {"content": "import os\n\nfrom socrate import system\n\nDEFAULT_CONFIG = {\n # Specific to the admin UI\n 'DOCKER_SOCKET': 'unix:///var/run/docker.sock',\n 'BABEL_DEFAULT_LOCALE': 'en',\n 'BABEL_DEFAULT_TIMEZONE': 'UTC',\n 'BOOTSTRAP_SERVE_LOCAL': True,\n 'RATELIMIT_STORAGE_URL': '',\n 'QUOTA_STORAGE_URL': '',\n 'DEBUG': False,\n 'DOMAIN_REGISTRATION': False,\n 'TEMPLATES_AUTO_RELOAD': True,\n # Database settings\n 'DB_FLAVOR': None,\n 'DB_USER': 'mailu',\n 'DB_PW': None,\n 'DB_HOST': 'database',\n 'DB_NAME': 'mailu',\n 'SQLITE_DATABASE_FILE':'data/main.db',\n 'SQLALCHEMY_DATABASE_URI': 'sqlite:////data/main.db',\n 'SQLALCHEMY_TRACK_MODIFICATIONS': False,\n # Statistics management\n 'INSTANCE_ID_PATH': '/data/instance',\n 'STATS_ENDPOINT': '0.{}.stats.mailu.io',\n # Common configuration variables\n 'SECRET_KEY': 'changeMe',\n 'DOMAIN': 'mailu.io',\n 'HOSTNAMES': 'mail.mailu.io,alternative.mailu.io,yetanother.mailu.io',\n 'POSTMASTER': 'postmaster',\n 'TLS_FLAVOR': 'cert',\n 'AUTH_RATELIMIT': '10/minute;1000/hour',\n 'AUTH_RATELIMIT_SUBNET': True,\n 'DISABLE_STATISTICS': False,\n # Mail settings\n 'DMARC_RUA': None,\n 'DMARC_RUF': None,\n 'WELCOME': False,\n 'WELCOME_SUBJECT': 'Dummy welcome topic',\n 'WELCOME_BODY': 'Dummy welcome body',\n 'DKIM_SELECTOR': 'dkim',\n 'DKIM_PATH': '/dkim/{domain}.{selector}.key',\n 'DEFAULT_QUOTA': 1000000000,\n # Web settings\n 'SITENAME': 'Mailu',\n 'WEBSITE': 'https://mailu.io',\n 'WEB_ADMIN': '/admin',\n 'WEB_WEBMAIL': '/webmail',\n 'WEBMAIL': 'none',\n 'RECAPTCHA_PUBLIC_KEY': '',\n 'RECAPTCHA_PRIVATE_KEY': '',\n # Advanced settings\n 'PASSWORD_SCHEME': 'PBKDF2',\n 'LOG_LEVEL': 'WARNING',\n # Host settings\n 'HOST_IMAP': 'imap',\n 'HOST_LMTP': 'imap:2525',\n 'HOST_POP3': 'imap',\n 'HOST_SMTP': 'smtp',\n 'HOST_AUTHSMTP': 'smtp',\n 'HOST_ADMIN': 'admin',\n 'WEBMAIL': 'none',\n 'HOST_WEBMAIL': 'webmail',\n 'HOST_WEBDAV': 'webdav:5232',\n 'HOST_REDIS': 'redis',\n 'HOST_FRONT': 'front',\n 'SUBNET': '192.168.203.0/24',\n 'POD_ADDRESS_RANGE': None\n}\n\nclass ConfigManager(dict):\n \"\"\" Naive configuration manager that uses environment only\n \"\"\"\n\n DB_TEMPLATES = {\n 'sqlite': 'sqlite:////{SQLITE_DATABASE_FILE}',\n 'postgresql': 'postgresql://{DB_USER}:{DB_PW}@{DB_HOST}/{DB_NAME}',\n 'mysql': 'mysql://{DB_USER}:{DB_PW}@{DB_HOST}/{DB_NAME}'\n }\n\n def __init__(self):\n self.config = dict()\n\n def get_host_address(self, name):\n # if MYSERVICE_ADDRESS is defined, use this\n if '{}_ADDRESS'.format(name) in os.environ:\n return os.environ.get('{}_ADDRESS'.format(name))\n # otherwise use the host name and resolve it\n return system.resolve_address(self.config['HOST_{}'.format(name)])\n\n def resolve_hosts(self):\n self.config[\"IMAP_ADDRESS\"] = self.get_host_address(\"IMAP\")\n self.config[\"POP3_ADDRESS\"] = self.get_host_address(\"POP3\")\n self.config[\"AUTHSMTP_ADDRESS\"] = self.get_host_address(\"AUTHSMTP\")\n self.config[\"SMTP_ADDRESS\"] = self.get_host_address(\"SMTP\")\n self.config[\"REDIS_ADDRESS\"] = self.get_host_address(\"REDIS\")\n if self.config[\"WEBMAIL\"] != \"none\":\n self.config[\"WEBMAIL_ADDRESS\"] = self.get_host_address(\"WEBMAIL\")\n\n def __coerce_value(self, value):\n if isinstance(value, str) and value.lower() in ('true','yes'):\n return True\n elif isinstance(value, str) and value.lower() in ('false', 'no'):\n return False\n return value\n\n def init_app(self, app):\n self.config.update(app.config)\n # get environment variables\n self.config.update({\n key: self.__coerce_value(os.environ.get(key, value))\n for key, value in DEFAULT_CONFIG.items()\n })\n self.resolve_hosts()\n\n # automatically set the sqlalchemy string\n if self.config['DB_FLAVOR']:\n template = self.DB_TEMPLATES[self.config['DB_FLAVOR']]\n self.config['SQLALCHEMY_DATABASE_URI'] = template.format(**self.config)\n\n self.config['RATELIMIT_STORAGE_URL'] = 'redis://{0}/2'.format(self.config['REDIS_ADDRESS'])\n self.config['QUOTA_STORAGE_URL'] = 'redis://{0}/1'.format(self.config['REDIS_ADDRESS'])\n # update the app config itself\n app.config = self\n\n def setdefault(self, key, value):\n if key not in self.config:\n self.config[key] = value\n return self.config[key]\n\n def get(self, *args):\n return self.config.get(*args)\n\n def keys(self):\n return self.config.keys()\n\n def __getitem__(self, key):\n return self.config.get(key)\n\n def __setitem__(self, key, value):\n self.config[key] = value\n\n def __contains__(self, key):\n return key in self.config\n", "path": "core/admin/mailu/configuration.py"}]} | 2,836 | 259 |
gh_patches_debug_40106 | rasdani/github-patches | git_diff | DataBiosphere__toil-3599 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Add type hints to toilMain.py
Add type hints to src/toil/utils/toilMain.py so it can be checked under mypy during linting.
Refers to #3568.
┆Issue is synchronized with this [Jira Task](https://ucsc-cgl.atlassian.net/browse/TOIL-891)
┆Issue Number: TOIL-891
</issue>
<code>
[start of src/toil/utils/toilMain.py]
1 import os
2 import re
3 import sys
4 import textwrap
5
6 import pkg_resources
7
8 from toil.version import version
9
10
11 def main():
12 modules = loadModules()
13
14 if len(sys.argv) < 2 or sys.argv[1] == '--help':
15 printHelp(modules)
16 sys.exit(0)
17
18 cmd = sys.argv[1]
19 if cmd == '--version':
20 printVersion()
21 sys.exit(0)
22
23 try:
24 module = modules[cmd]
25 except KeyError:
26 sys.stderr.write(f'Unknown option "{cmd}". Pass --help to display usage information.\n')
27 sys.exit(1)
28
29 del sys.argv[1]
30 module.main()
31
32 def loadModules():
33 # noinspection PyUnresolvedReferences
34 from toil.utils import (toilClean,
35 toilDebugFile,
36 toilDebugJob,
37 toilDestroyCluster,
38 toilKill,
39 toilLaunchCluster,
40 toilRsyncCluster,
41 toilSshCluster,
42 toilStats,
43 toilStatus)
44 return {"-".join([i.lower() for i in re.findall('[A-Z][^A-Z]*', name)]): module for name, module in locals().items()}
45
46
47 def printHelp(modules):
48 name = os.path.basename(sys.argv[0])
49 descriptions = '\n '.join(f'{cmd} - {mod.__doc__.strip()}' for cmd, mod in modules.items() if mod)
50 print(textwrap.dedent(f"""
51 Usage: {name} COMMAND ...
52 {name} --help
53 {name} COMMAND --help
54
55 Where COMMAND is one of the following:
56
57 {descriptions}
58 """[1:]))
59
60
61 def printVersion():
62 try:
63 print(pkg_resources.get_distribution('toil').version)
64 except:
65 print(f'Version gathered from toil.version: {version}')
66
[end of src/toil/utils/toilMain.py]
[start of contrib/admin/mypy-with-ignore.py]
1 #!/usr/bin/env python3
2 """
3 Runs mypy and ignores files that do not yet have passing type hints.
4
5 Does not type check test files (any path including "src/toil/test").
6 """
7 import os
8 import subprocess
9 import sys
10
11 os.environ['MYPYPATH'] = 'contrib/typeshed'
12 pkg_root = os.path.abspath(os.path.join(os.path.dirname(__file__), '..', '..')) # noqa
13 sys.path.insert(0, pkg_root) # noqa
14
15 from src.toil.lib.resources import glob # type: ignore
16
17
18 def main():
19 all_files_to_check = []
20 for d in ['dashboard', 'docker', 'docs', 'src']:
21 all_files_to_check += glob(glob_pattern='*.py', directoryname=os.path.join(pkg_root, d))
22
23 # TODO: Remove these paths as typing is added and mypy conflicts are addressed
24 ignore_paths = [os.path.abspath(f) for f in [
25 'docker/Dockerfile.py',
26 'docs/conf.py',
27 'docs/vendor/sphinxcontrib/fulltoc.py',
28 'docs/vendor/sphinxcontrib/__init__.py',
29 'src/toil/job.py',
30 'src/toil/leader.py',
31 'src/toil/statsAndLogging.py',
32 'src/toil/common.py',
33 'src/toil/realtimeLogger.py',
34 'src/toil/worker.py',
35 'src/toil/serviceManager.py',
36 'src/toil/toilState.py',
37 'src/toil/__init__.py',
38 'src/toil/resource.py',
39 'src/toil/deferred.py',
40 'src/toil/version.py',
41 'src/toil/wdl/utils.py',
42 'src/toil/wdl/wdl_types.py',
43 'src/toil/wdl/wdl_synthesis.py',
44 'src/toil/wdl/wdl_analysis.py',
45 'src/toil/wdl/wdl_functions.py',
46 'src/toil/wdl/toilwdl.py',
47 'src/toil/wdl/versions/draft2.py',
48 'src/toil/wdl/versions/v1.py',
49 'src/toil/wdl/versions/dev.py',
50 'src/toil/provisioners/clusterScaler.py',
51 'src/toil/provisioners/abstractProvisioner.py',
52 'src/toil/provisioners/gceProvisioner.py',
53 'src/toil/provisioners/__init__.py',
54 'src/toil/provisioners/node.py',
55 'src/toil/provisioners/aws/boto2Context.py',
56 'src/toil/provisioners/aws/awsProvisioner.py',
57 'src/toil/provisioners/aws/__init__.py',
58 'src/toil/batchSystems/slurm.py',
59 'src/toil/batchSystems/gridengine.py',
60 'src/toil/batchSystems/singleMachine.py',
61 'src/toil/batchSystems/abstractBatchSystem.py',
62 'src/toil/batchSystems/parasol.py',
63 'src/toil/batchSystems/kubernetes.py',
64 'src/toil/batchSystems/torque.py',
65 'src/toil/batchSystems/options.py',
66 'src/toil/batchSystems/registry.py',
67 'src/toil/batchSystems/lsf.py',
68 'src/toil/batchSystems/__init__.py',
69 'src/toil/batchSystems/abstractGridEngineBatchSystem.py',
70 'src/toil/batchSystems/lsfHelper.py',
71 'src/toil/batchSystems/htcondor.py',
72 'src/toil/batchSystems/mesos/batchSystem.py',
73 'src/toil/batchSystems/mesos/executor.py',
74 'src/toil/batchSystems/mesos/conftest.py',
75 'src/toil/batchSystems/mesos/__init__.py',
76 'src/toil/batchSystems/mesos/test/__init__.py',
77 'src/toil/cwl/conftest.py',
78 'src/toil/cwl/__init__.py',
79 'src/toil/cwl/cwltoil.py',
80 'src/toil/fileStores/cachingFileStore.py',
81 'src/toil/fileStores/abstractFileStore.py',
82 'src/toil/fileStores/nonCachingFileStore.py',
83 'src/toil/fileStores/__init__.py',
84 'src/toil/jobStores/utils.py',
85 'src/toil/jobStores/abstractJobStore.py',
86 'src/toil/jobStores/conftest.py',
87 'src/toil/jobStores/fileJobStore.py',
88 'src/toil/jobStores/__init__.py',
89 'src/toil/jobStores/googleJobStore.py',
90 'src/toil/jobStores/aws/utils.py',
91 'src/toil/jobStores/aws/jobStore.py',
92 'src/toil/jobStores/aws/__init__.py',
93 'src/toil/utils/toilDebugFile.py',
94 'src/toil/utils/toilStatus.py',
95 'src/toil/utils/toilStats.py',
96 'src/toil/utils/toilMain.py',
97 'src/toil/utils/__init__.py',
98 'src/toil/utils/toilLaunchCluster.py',
99 'src/toil/lib/memoize.py',
100 'src/toil/lib/throttle.py',
101 'src/toil/lib/humanize.py',
102 'src/toil/lib/compatibility.py',
103 'src/toil/lib/iterables.py',
104 'src/toil/lib/bioio.py',
105 'src/toil/lib/ec2.py',
106 # 'src/toil/lib/conversions.py',
107 'src/toil/lib/ec2nodes.py',
108 # 'src/toil/lib/misc.py',
109 'src/toil/lib/expando.py',
110 'src/toil/lib/threading.py',
111 'src/toil/lib/exceptions.py',
112 'src/toil/lib/__init__.py',
113 'src/toil/lib/generatedEC2Lists.py',
114 'src/toil/lib/retry.py',
115 'src/toil/lib/objects.py',
116 'src/toil/lib/io.py',
117 'src/toil/lib/docker.py',
118 # 'src/toil/lib/encryption/_nacl.py',
119 'src/toil/lib/encryption/_dummy.py',
120 'src/toil/lib/encryption/conftest.py',
121 'src/toil/lib/encryption/__init__.py',
122 'src/toil/lib/aws/utils.py',
123 'src/toil/lib/aws/__init__.py'
124 ]]
125
126 filtered_files_to_check = []
127 for file_path in all_files_to_check:
128 if file_path not in ignore_paths and 'src/toil/test' not in file_path:
129 filtered_files_to_check.append(file_path)
130 # follow-imports type checks pypi projects we don't control, so we skip it; why is this their default?
131 args = ['mypy', '--follow-imports=skip'] + filtered_files_to_check
132 p = subprocess.run(args=args, stdout=subprocess.PIPE)
133 result = p.stdout.decode()
134 print(result)
135 if 'Success: no issues found' not in result:
136 exit(1)
137
138
139 if __name__ == '__main__':
140 main()
141
[end of contrib/admin/mypy-with-ignore.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/contrib/admin/mypy-with-ignore.py b/contrib/admin/mypy-with-ignore.py
--- a/contrib/admin/mypy-with-ignore.py
+++ b/contrib/admin/mypy-with-ignore.py
@@ -93,7 +93,6 @@
'src/toil/utils/toilDebugFile.py',
'src/toil/utils/toilStatus.py',
'src/toil/utils/toilStats.py',
- 'src/toil/utils/toilMain.py',
'src/toil/utils/__init__.py',
'src/toil/utils/toilLaunchCluster.py',
'src/toil/lib/memoize.py',
@@ -103,9 +102,7 @@
'src/toil/lib/iterables.py',
'src/toil/lib/bioio.py',
'src/toil/lib/ec2.py',
- # 'src/toil/lib/conversions.py',
'src/toil/lib/ec2nodes.py',
- # 'src/toil/lib/misc.py',
'src/toil/lib/expando.py',
'src/toil/lib/threading.py',
'src/toil/lib/exceptions.py',
diff --git a/src/toil/utils/toilMain.py b/src/toil/utils/toilMain.py
--- a/src/toil/utils/toilMain.py
+++ b/src/toil/utils/toilMain.py
@@ -2,13 +2,14 @@
import re
import sys
import textwrap
+import types
import pkg_resources
from toil.version import version
+from typing import Any, Dict
-
-def main():
+def main() -> None:
modules = loadModules()
if len(sys.argv) < 2 or sys.argv[1] == '--help':
@@ -27,9 +28,20 @@
sys.exit(1)
del sys.argv[1]
- module.main()
+ get_or_die(module, 'main')()
+
+def get_or_die(module: types.ModuleType, name: str) -> Any:
+ """
+ Get an object from a module or complain that it is missing.
+ """
+ if hasattr(module, name):
+ return getattr(module, name)
+ else:
+ sys.stderr.write(f'Internal Toil error!\nToil utility module '
+ f'{module.__name__} is missing required attribute {name}\n')
+ sys.exit(1)
-def loadModules():
+def loadModules() -> Dict[str, types.ModuleType]:
# noinspection PyUnresolvedReferences
from toil.utils import (toilClean,
toilDebugFile,
@@ -44,9 +56,9 @@
return {"-".join([i.lower() for i in re.findall('[A-Z][^A-Z]*', name)]): module for name, module in locals().items()}
-def printHelp(modules):
+def printHelp(modules: Dict[str, types.ModuleType]) -> None:
name = os.path.basename(sys.argv[0])
- descriptions = '\n '.join(f'{cmd} - {mod.__doc__.strip()}' for cmd, mod in modules.items() if mod)
+ descriptions = '\n '.join(f'{cmd} - {get_or_die(mod, "__doc__").strip()}' for cmd, mod in modules.items() if mod)
print(textwrap.dedent(f"""
Usage: {name} COMMAND ...
{name} --help
@@ -58,7 +70,7 @@
"""[1:]))
-def printVersion():
+def printVersion() -> None:
try:
print(pkg_resources.get_distribution('toil').version)
except:
| {"golden_diff": "diff --git a/contrib/admin/mypy-with-ignore.py b/contrib/admin/mypy-with-ignore.py\n--- a/contrib/admin/mypy-with-ignore.py\n+++ b/contrib/admin/mypy-with-ignore.py\n@@ -93,7 +93,6 @@\n 'src/toil/utils/toilDebugFile.py',\n 'src/toil/utils/toilStatus.py',\n 'src/toil/utils/toilStats.py',\n- 'src/toil/utils/toilMain.py',\n 'src/toil/utils/__init__.py',\n 'src/toil/utils/toilLaunchCluster.py',\n 'src/toil/lib/memoize.py',\n@@ -103,9 +102,7 @@\n 'src/toil/lib/iterables.py',\n 'src/toil/lib/bioio.py',\n 'src/toil/lib/ec2.py',\n- # 'src/toil/lib/conversions.py',\n 'src/toil/lib/ec2nodes.py',\n- # 'src/toil/lib/misc.py',\n 'src/toil/lib/expando.py',\n 'src/toil/lib/threading.py',\n 'src/toil/lib/exceptions.py',\ndiff --git a/src/toil/utils/toilMain.py b/src/toil/utils/toilMain.py\n--- a/src/toil/utils/toilMain.py\n+++ b/src/toil/utils/toilMain.py\n@@ -2,13 +2,14 @@\n import re\n import sys\n import textwrap\n+import types\n \n import pkg_resources\n \n from toil.version import version\n+from typing import Any, Dict\n \n-\n-def main():\n+def main() -> None:\n modules = loadModules()\n \n if len(sys.argv) < 2 or sys.argv[1] == '--help':\n@@ -27,9 +28,20 @@\n sys.exit(1)\n \n del sys.argv[1]\n- module.main()\n+ get_or_die(module, 'main')()\n+\n+def get_or_die(module: types.ModuleType, name: str) -> Any:\n+ \"\"\"\n+ Get an object from a module or complain that it is missing.\n+ \"\"\"\n+ if hasattr(module, name):\n+ return getattr(module, name)\n+ else:\n+ sys.stderr.write(f'Internal Toil error!\\nToil utility module '\n+ f'{module.__name__} is missing required attribute {name}\\n')\n+ sys.exit(1)\n \n-def loadModules():\n+def loadModules() -> Dict[str, types.ModuleType]:\n # noinspection PyUnresolvedReferences\n from toil.utils import (toilClean,\n toilDebugFile,\n@@ -44,9 +56,9 @@\n return {\"-\".join([i.lower() for i in re.findall('[A-Z][^A-Z]*', name)]): module for name, module in locals().items()}\n \n \n-def printHelp(modules):\n+def printHelp(modules: Dict[str, types.ModuleType]) -> None:\n name = os.path.basename(sys.argv[0])\n- descriptions = '\\n '.join(f'{cmd} - {mod.__doc__.strip()}' for cmd, mod in modules.items() if mod)\n+ descriptions = '\\n '.join(f'{cmd} - {get_or_die(mod, \"__doc__\").strip()}' for cmd, mod in modules.items() if mod)\n print(textwrap.dedent(f\"\"\"\n Usage: {name} COMMAND ...\n {name} --help\n@@ -58,7 +70,7 @@\n \"\"\"[1:]))\n \n \n-def printVersion():\n+def printVersion() -> None:\n try:\n print(pkg_resources.get_distribution('toil').version)\n except:\n", "issue": "Add type hints to toilMain.py\nAdd type hints to src/toil/utils/toilMain.py so it can be checked under mypy during linting.\n\nRefers to #3568.\n\n\u2506Issue is synchronized with this [Jira Task](https://ucsc-cgl.atlassian.net/browse/TOIL-891)\n\u2506Issue Number: TOIL-891\n\n", "before_files": [{"content": "import os\nimport re\nimport sys\nimport textwrap\n\nimport pkg_resources\n\nfrom toil.version import version\n\n\ndef main():\n modules = loadModules()\n\n if len(sys.argv) < 2 or sys.argv[1] == '--help':\n printHelp(modules)\n sys.exit(0)\n\n cmd = sys.argv[1]\n if cmd == '--version':\n printVersion()\n sys.exit(0)\n\n try:\n module = modules[cmd]\n except KeyError:\n sys.stderr.write(f'Unknown option \"{cmd}\". Pass --help to display usage information.\\n')\n sys.exit(1)\n\n del sys.argv[1]\n module.main()\n\ndef loadModules():\n # noinspection PyUnresolvedReferences\n from toil.utils import (toilClean,\n toilDebugFile,\n toilDebugJob,\n toilDestroyCluster,\n toilKill,\n toilLaunchCluster,\n toilRsyncCluster,\n toilSshCluster,\n toilStats,\n toilStatus)\n return {\"-\".join([i.lower() for i in re.findall('[A-Z][^A-Z]*', name)]): module for name, module in locals().items()}\n\n\ndef printHelp(modules):\n name = os.path.basename(sys.argv[0])\n descriptions = '\\n '.join(f'{cmd} - {mod.__doc__.strip()}' for cmd, mod in modules.items() if mod)\n print(textwrap.dedent(f\"\"\"\n Usage: {name} COMMAND ...\n {name} --help\n {name} COMMAND --help\n\n Where COMMAND is one of the following:\n\n {descriptions}\n \"\"\"[1:]))\n\n\ndef printVersion():\n try:\n print(pkg_resources.get_distribution('toil').version)\n except:\n print(f'Version gathered from toil.version: {version}')\n", "path": "src/toil/utils/toilMain.py"}, {"content": "#!/usr/bin/env python3\n\"\"\"\nRuns mypy and ignores files that do not yet have passing type hints.\n\nDoes not type check test files (any path including \"src/toil/test\").\n\"\"\"\nimport os\nimport subprocess\nimport sys\n\nos.environ['MYPYPATH'] = 'contrib/typeshed'\npkg_root = os.path.abspath(os.path.join(os.path.dirname(__file__), '..', '..')) # noqa\nsys.path.insert(0, pkg_root) # noqa\n\nfrom src.toil.lib.resources import glob # type: ignore\n\n\ndef main():\n all_files_to_check = []\n for d in ['dashboard', 'docker', 'docs', 'src']:\n all_files_to_check += glob(glob_pattern='*.py', directoryname=os.path.join(pkg_root, d))\n\n # TODO: Remove these paths as typing is added and mypy conflicts are addressed\n ignore_paths = [os.path.abspath(f) for f in [\n 'docker/Dockerfile.py',\n 'docs/conf.py',\n 'docs/vendor/sphinxcontrib/fulltoc.py',\n 'docs/vendor/sphinxcontrib/__init__.py',\n 'src/toil/job.py',\n 'src/toil/leader.py',\n 'src/toil/statsAndLogging.py',\n 'src/toil/common.py',\n 'src/toil/realtimeLogger.py',\n 'src/toil/worker.py',\n 'src/toil/serviceManager.py',\n 'src/toil/toilState.py',\n 'src/toil/__init__.py',\n 'src/toil/resource.py',\n 'src/toil/deferred.py',\n 'src/toil/version.py',\n 'src/toil/wdl/utils.py',\n 'src/toil/wdl/wdl_types.py',\n 'src/toil/wdl/wdl_synthesis.py',\n 'src/toil/wdl/wdl_analysis.py',\n 'src/toil/wdl/wdl_functions.py',\n 'src/toil/wdl/toilwdl.py',\n 'src/toil/wdl/versions/draft2.py',\n 'src/toil/wdl/versions/v1.py',\n 'src/toil/wdl/versions/dev.py',\n 'src/toil/provisioners/clusterScaler.py',\n 'src/toil/provisioners/abstractProvisioner.py',\n 'src/toil/provisioners/gceProvisioner.py',\n 'src/toil/provisioners/__init__.py',\n 'src/toil/provisioners/node.py',\n 'src/toil/provisioners/aws/boto2Context.py',\n 'src/toil/provisioners/aws/awsProvisioner.py',\n 'src/toil/provisioners/aws/__init__.py',\n 'src/toil/batchSystems/slurm.py',\n 'src/toil/batchSystems/gridengine.py',\n 'src/toil/batchSystems/singleMachine.py',\n 'src/toil/batchSystems/abstractBatchSystem.py',\n 'src/toil/batchSystems/parasol.py',\n 'src/toil/batchSystems/kubernetes.py',\n 'src/toil/batchSystems/torque.py',\n 'src/toil/batchSystems/options.py',\n 'src/toil/batchSystems/registry.py',\n 'src/toil/batchSystems/lsf.py',\n 'src/toil/batchSystems/__init__.py',\n 'src/toil/batchSystems/abstractGridEngineBatchSystem.py',\n 'src/toil/batchSystems/lsfHelper.py',\n 'src/toil/batchSystems/htcondor.py',\n 'src/toil/batchSystems/mesos/batchSystem.py',\n 'src/toil/batchSystems/mesos/executor.py',\n 'src/toil/batchSystems/mesos/conftest.py',\n 'src/toil/batchSystems/mesos/__init__.py',\n 'src/toil/batchSystems/mesos/test/__init__.py',\n 'src/toil/cwl/conftest.py',\n 'src/toil/cwl/__init__.py',\n 'src/toil/cwl/cwltoil.py',\n 'src/toil/fileStores/cachingFileStore.py',\n 'src/toil/fileStores/abstractFileStore.py',\n 'src/toil/fileStores/nonCachingFileStore.py',\n 'src/toil/fileStores/__init__.py',\n 'src/toil/jobStores/utils.py',\n 'src/toil/jobStores/abstractJobStore.py',\n 'src/toil/jobStores/conftest.py',\n 'src/toil/jobStores/fileJobStore.py',\n 'src/toil/jobStores/__init__.py',\n 'src/toil/jobStores/googleJobStore.py',\n 'src/toil/jobStores/aws/utils.py',\n 'src/toil/jobStores/aws/jobStore.py',\n 'src/toil/jobStores/aws/__init__.py',\n 'src/toil/utils/toilDebugFile.py',\n 'src/toil/utils/toilStatus.py',\n 'src/toil/utils/toilStats.py',\n 'src/toil/utils/toilMain.py',\n 'src/toil/utils/__init__.py',\n 'src/toil/utils/toilLaunchCluster.py',\n 'src/toil/lib/memoize.py',\n 'src/toil/lib/throttle.py',\n 'src/toil/lib/humanize.py',\n 'src/toil/lib/compatibility.py',\n 'src/toil/lib/iterables.py',\n 'src/toil/lib/bioio.py',\n 'src/toil/lib/ec2.py',\n # 'src/toil/lib/conversions.py',\n 'src/toil/lib/ec2nodes.py',\n # 'src/toil/lib/misc.py',\n 'src/toil/lib/expando.py',\n 'src/toil/lib/threading.py',\n 'src/toil/lib/exceptions.py',\n 'src/toil/lib/__init__.py',\n 'src/toil/lib/generatedEC2Lists.py',\n 'src/toil/lib/retry.py',\n 'src/toil/lib/objects.py',\n 'src/toil/lib/io.py',\n 'src/toil/lib/docker.py',\n # 'src/toil/lib/encryption/_nacl.py',\n 'src/toil/lib/encryption/_dummy.py',\n 'src/toil/lib/encryption/conftest.py',\n 'src/toil/lib/encryption/__init__.py',\n 'src/toil/lib/aws/utils.py',\n 'src/toil/lib/aws/__init__.py'\n ]]\n\n filtered_files_to_check = []\n for file_path in all_files_to_check:\n if file_path not in ignore_paths and 'src/toil/test' not in file_path:\n filtered_files_to_check.append(file_path)\n # follow-imports type checks pypi projects we don't control, so we skip it; why is this their default?\n args = ['mypy', '--follow-imports=skip'] + filtered_files_to_check\n p = subprocess.run(args=args, stdout=subprocess.PIPE)\n result = p.stdout.decode()\n print(result)\n if 'Success: no issues found' not in result:\n exit(1)\n\n\nif __name__ == '__main__':\n main()\n", "path": "contrib/admin/mypy-with-ignore.py"}]} | 3,009 | 790 |
gh_patches_debug_9626 | rasdani/github-patches | git_diff | open-telemetry__opentelemetry-python-1545 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Jaeger Propagator not handling missing carrier
Python 3.8 / Flask injector 0.17b0
**Steps to reproduce**
If jaeger is the text map and you do not send a carrier header then the parser fails when it tries to parse the carrier header.
```python
if context is None:
context = get_current()
fields = _extract_first_element(
getter.get(carrier, self.TRACE_ID_KEY)
).split(":")
```
**What is the expected **
Parse as invalid span. Code continues.
**What is the actual behavior?**
```
File "/usr/local/lib/python3.8/site-packages/opentelemetry/propagators/jaeger/__init__.py", line 48, in extract
fields = _extract_first_element(
AttributeError: 'NoneType' object has no attribute ‘split’
```
**Additional context**
TraceContextTextMapPropagator does this:
```python
header = getter.get(carrier, self._TRACEPARENT_HEADER_NAME)
if not header:
return trace.set_span_in_context(trace.INVALID_SPAN, context)
```
</issue>
<code>
[start of propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py]
1 # Copyright The OpenTelemetry Authors
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14
15 import typing
16 import urllib.parse
17
18 import opentelemetry.trace as trace
19 from opentelemetry import baggage
20 from opentelemetry.context import Context, get_current
21 from opentelemetry.trace.propagation.textmap import (
22 Getter,
23 Setter,
24 TextMapPropagator,
25 TextMapPropagatorT,
26 )
27
28
29 class JaegerPropagator(TextMapPropagator):
30 """Propagator for the Jaeger format.
31
32 See: https://www.jaegertracing.io/docs/1.19/client-libraries/#propagation-format
33 """
34
35 TRACE_ID_KEY = "uber-trace-id"
36 BAGGAGE_PREFIX = "uberctx-"
37 DEBUG_FLAG = 0x02
38
39 def extract(
40 self,
41 getter: Getter[TextMapPropagatorT],
42 carrier: TextMapPropagatorT,
43 context: typing.Optional[Context] = None,
44 ) -> Context:
45
46 if context is None:
47 context = get_current()
48 fields = _extract_first_element(
49 getter.get(carrier, self.TRACE_ID_KEY)
50 ).split(":")
51
52 context = self._extract_baggage(getter, carrier, context)
53 if len(fields) != 4:
54 return trace.set_span_in_context(trace.INVALID_SPAN, context)
55
56 trace_id, span_id, _parent_id, flags = fields
57 if (
58 trace_id == trace.INVALID_TRACE_ID
59 or span_id == trace.INVALID_SPAN_ID
60 ):
61 return trace.set_span_in_context(trace.INVALID_SPAN, context)
62
63 span = trace.DefaultSpan(
64 trace.SpanContext(
65 trace_id=int(trace_id, 16),
66 span_id=int(span_id, 16),
67 is_remote=True,
68 trace_flags=trace.TraceFlags(
69 int(flags, 16) & trace.TraceFlags.SAMPLED
70 ),
71 )
72 )
73 return trace.set_span_in_context(span, context)
74
75 def inject(
76 self,
77 set_in_carrier: Setter[TextMapPropagatorT],
78 carrier: TextMapPropagatorT,
79 context: typing.Optional[Context] = None,
80 ) -> None:
81 span = trace.get_current_span(context=context)
82 span_context = span.get_span_context()
83 if span_context == trace.INVALID_SPAN_CONTEXT:
84 return
85
86 span_parent_id = span.parent.span_id if span.parent else 0
87 trace_flags = span_context.trace_flags
88 if trace_flags.sampled:
89 trace_flags |= self.DEBUG_FLAG
90
91 # set span identity
92 set_in_carrier(
93 carrier,
94 self.TRACE_ID_KEY,
95 _format_uber_trace_id(
96 span_context.trace_id,
97 span_context.span_id,
98 span_parent_id,
99 trace_flags,
100 ),
101 )
102
103 # set span baggage, if any
104 baggage_entries = baggage.get_all(context=context)
105 if not baggage_entries:
106 return
107 for key, value in baggage_entries.items():
108 baggage_key = self.BAGGAGE_PREFIX + key
109 set_in_carrier(
110 carrier, baggage_key, urllib.parse.quote(str(value))
111 )
112
113 @property
114 def fields(self) -> typing.Set[str]:
115 return {self.TRACE_ID_KEY}
116
117 def _extract_baggage(self, getter, carrier, context):
118 baggage_keys = [
119 key
120 for key in getter.keys(carrier)
121 if key.startswith(self.BAGGAGE_PREFIX)
122 ]
123 for key in baggage_keys:
124 value = _extract_first_element(getter.get(carrier, key))
125 context = baggage.set_baggage(
126 key.replace(self.BAGGAGE_PREFIX, ""),
127 urllib.parse.unquote(value).strip(),
128 context=context,
129 )
130 return context
131
132
133 def _format_uber_trace_id(trace_id, span_id, parent_span_id, flags):
134 return "{:032x}:{:016x}:{:016x}:{:02x}".format(
135 trace_id, span_id, parent_span_id, flags
136 )
137
138
139 def _extract_first_element(
140 items: typing.Iterable[TextMapPropagatorT],
141 ) -> typing.Optional[TextMapPropagatorT]:
142 if items is None:
143 return None
144 return next(iter(items), None)
145
[end of propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py b/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py
--- a/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py
+++ b/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py
@@ -45,9 +45,10 @@
if context is None:
context = get_current()
- fields = _extract_first_element(
- getter.get(carrier, self.TRACE_ID_KEY)
- ).split(":")
+ header = getter.get(carrier, self.TRACE_ID_KEY)
+ if not header:
+ return trace.set_span_in_context(trace.INVALID_SPAN, context)
+ fields = _extract_first_element(header).split(":")
context = self._extract_baggage(getter, carrier, context)
if len(fields) != 4:
| {"golden_diff": "diff --git a/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py b/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py\n--- a/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py\n+++ b/propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py\n@@ -45,9 +45,10 @@\n \n if context is None:\n context = get_current()\n- fields = _extract_first_element(\n- getter.get(carrier, self.TRACE_ID_KEY)\n- ).split(\":\")\n+ header = getter.get(carrier, self.TRACE_ID_KEY)\n+ if not header:\n+ return trace.set_span_in_context(trace.INVALID_SPAN, context)\n+ fields = _extract_first_element(header).split(\":\")\n \n context = self._extract_baggage(getter, carrier, context)\n if len(fields) != 4:\n", "issue": "Jaeger Propagator not handling missing carrier\nPython 3.8 / Flask injector 0.17b0\r\n\r\n\r\n**Steps to reproduce**\r\nIf jaeger is the text map and you do not send a carrier header then the parser fails when it tries to parse the carrier header.\r\n\r\n```python\r\n if context is None:\r\n context = get_current()\r\n fields = _extract_first_element(\r\n getter.get(carrier, self.TRACE_ID_KEY)\r\n ).split(\":\")\r\n```\r\n\r\n**What is the expected **\r\nParse as invalid span. Code continues.\r\n\r\n**What is the actual behavior?**\r\n```\r\nFile \"/usr/local/lib/python3.8/site-packages/opentelemetry/propagators/jaeger/__init__.py\", line 48, in extract\r\n fields = _extract_first_element(\r\nAttributeError: 'NoneType' object has no attribute \u2018split\u2019\r\n```\r\n\r\n**Additional context**\r\nTraceContextTextMapPropagator does this:\r\n\r\n```python\r\n header = getter.get(carrier, self._TRACEPARENT_HEADER_NAME)\r\n\r\n if not header:\r\n return trace.set_span_in_context(trace.INVALID_SPAN, context)\r\n```\n", "before_files": [{"content": "# Copyright The OpenTelemetry Authors\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport typing\nimport urllib.parse\n\nimport opentelemetry.trace as trace\nfrom opentelemetry import baggage\nfrom opentelemetry.context import Context, get_current\nfrom opentelemetry.trace.propagation.textmap import (\n Getter,\n Setter,\n TextMapPropagator,\n TextMapPropagatorT,\n)\n\n\nclass JaegerPropagator(TextMapPropagator):\n \"\"\"Propagator for the Jaeger format.\n\n See: https://www.jaegertracing.io/docs/1.19/client-libraries/#propagation-format\n \"\"\"\n\n TRACE_ID_KEY = \"uber-trace-id\"\n BAGGAGE_PREFIX = \"uberctx-\"\n DEBUG_FLAG = 0x02\n\n def extract(\n self,\n getter: Getter[TextMapPropagatorT],\n carrier: TextMapPropagatorT,\n context: typing.Optional[Context] = None,\n ) -> Context:\n\n if context is None:\n context = get_current()\n fields = _extract_first_element(\n getter.get(carrier, self.TRACE_ID_KEY)\n ).split(\":\")\n\n context = self._extract_baggage(getter, carrier, context)\n if len(fields) != 4:\n return trace.set_span_in_context(trace.INVALID_SPAN, context)\n\n trace_id, span_id, _parent_id, flags = fields\n if (\n trace_id == trace.INVALID_TRACE_ID\n or span_id == trace.INVALID_SPAN_ID\n ):\n return trace.set_span_in_context(trace.INVALID_SPAN, context)\n\n span = trace.DefaultSpan(\n trace.SpanContext(\n trace_id=int(trace_id, 16),\n span_id=int(span_id, 16),\n is_remote=True,\n trace_flags=trace.TraceFlags(\n int(flags, 16) & trace.TraceFlags.SAMPLED\n ),\n )\n )\n return trace.set_span_in_context(span, context)\n\n def inject(\n self,\n set_in_carrier: Setter[TextMapPropagatorT],\n carrier: TextMapPropagatorT,\n context: typing.Optional[Context] = None,\n ) -> None:\n span = trace.get_current_span(context=context)\n span_context = span.get_span_context()\n if span_context == trace.INVALID_SPAN_CONTEXT:\n return\n\n span_parent_id = span.parent.span_id if span.parent else 0\n trace_flags = span_context.trace_flags\n if trace_flags.sampled:\n trace_flags |= self.DEBUG_FLAG\n\n # set span identity\n set_in_carrier(\n carrier,\n self.TRACE_ID_KEY,\n _format_uber_trace_id(\n span_context.trace_id,\n span_context.span_id,\n span_parent_id,\n trace_flags,\n ),\n )\n\n # set span baggage, if any\n baggage_entries = baggage.get_all(context=context)\n if not baggage_entries:\n return\n for key, value in baggage_entries.items():\n baggage_key = self.BAGGAGE_PREFIX + key\n set_in_carrier(\n carrier, baggage_key, urllib.parse.quote(str(value))\n )\n\n @property\n def fields(self) -> typing.Set[str]:\n return {self.TRACE_ID_KEY}\n\n def _extract_baggage(self, getter, carrier, context):\n baggage_keys = [\n key\n for key in getter.keys(carrier)\n if key.startswith(self.BAGGAGE_PREFIX)\n ]\n for key in baggage_keys:\n value = _extract_first_element(getter.get(carrier, key))\n context = baggage.set_baggage(\n key.replace(self.BAGGAGE_PREFIX, \"\"),\n urllib.parse.unquote(value).strip(),\n context=context,\n )\n return context\n\n\ndef _format_uber_trace_id(trace_id, span_id, parent_span_id, flags):\n return \"{:032x}:{:016x}:{:016x}:{:02x}\".format(\n trace_id, span_id, parent_span_id, flags\n )\n\n\ndef _extract_first_element(\n items: typing.Iterable[TextMapPropagatorT],\n) -> typing.Optional[TextMapPropagatorT]:\n if items is None:\n return None\n return next(iter(items), None)\n", "path": "propagator/opentelemetry-propagator-jaeger/src/opentelemetry/propagators/jaeger/__init__.py"}]} | 2,181 | 252 |
gh_patches_debug_9572 | rasdani/github-patches | git_diff | ESMCI__cime-1428 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Clean up python in unit_testing
Clean up code in unit_testing/python
</issue>
<code>
[start of scripts/lib/CIME/code_checker.py]
1 """
2 Libraries for checking python code with pylint
3 """
4
5 from CIME.XML.standard_module_setup import *
6
7 from CIME.utils import run_cmd, run_cmd_no_fail, expect, get_cime_root, is_python_executable
8
9 from multiprocessing.dummy import Pool as ThreadPool
10 from distutils.spawn import find_executable
11
12 logger = logging.getLogger(__name__)
13
14 ###############################################################################
15 def _run_pylint(on_file, interactive):
16 ###############################################################################
17 pylint = find_executable("pylint")
18
19 cmd_options = " --disable=I,C,R,logging-not-lazy,wildcard-import,unused-wildcard-import,fixme,broad-except,bare-except,eval-used,exec-used,global-statement"
20 cimeroot = get_cime_root()
21
22 if "scripts/Tools" in on_file:
23 cmd_options +=",relative-import"
24
25 # add init-hook option
26 cmd_options += " --init-hook='sys.path.extend((\"%s\",\"%s\",\"%s\"))'"%\
27 (os.path.join(cimeroot,"scripts","lib"),
28 os.path.join(cimeroot,"scripts","Tools"),
29 os.path.join(cimeroot,"tools","unit_testing","python"))
30
31 cmd = "%s %s %s" % (pylint, cmd_options, on_file)
32 logger.debug("pylint command is %s"%cmd)
33 stat, out, err = run_cmd(cmd, verbose=False, from_dir=cimeroot)
34 if stat != 0:
35 if interactive:
36 logger.info("File %s has pylint problems, please fix\n Use command: %s" % (on_file, cmd))
37 logger.info(out + "\n" + err)
38 return (on_file, out + "\n" + err)
39 else:
40 if interactive:
41 logger.info("File %s has no pylint problems" % on_file)
42 return (on_file, "")
43
44 ###############################################################################
45 def _matches(file_path, file_ends):
46 ###############################################################################
47 for file_end in file_ends:
48 if file_path.endswith(file_end):
49 return True
50
51 return False
52
53 ###############################################################################
54 def _should_pylint_skip(filepath):
55 ###############################################################################
56 # TODO - get rid of this
57 list_of_directories_to_ignore = ("xmlconvertors", "pointclm", "point_clm", "tools", "machines", "apidocs")
58 for dir_to_skip in list_of_directories_to_ignore:
59 if dir_to_skip in filepath:
60 return True
61
62 return False
63
64 ###############################################################################
65 def get_all_checkable_files():
66 ###############################################################################
67 cimeroot = get_cime_root()
68 all_git_files = run_cmd_no_fail("git ls-files", from_dir=cimeroot, verbose=False).splitlines()
69
70 files_to_test = [item for item in all_git_files
71 if ((item.endswith(".py") or is_python_executable(os.path.join(cimeroot, item))) and not _should_pylint_skip(item))]
72 return files_to_test
73
74 ###############################################################################
75 def check_code(files, num_procs=10, interactive=False):
76 ###############################################################################
77 """
78 Check all python files in the given directory
79
80 Returns True if all files had no problems
81 """
82 # Get list of files to check, we look to see if user-provided file argument
83 # is a valid file, if not, we search the repo for a file with similar name.
84 repo_files = run_cmd_no_fail('git ls-files --full-name %s' % get_cime_root(), verbose=False).splitlines()
85 files_to_check = []
86 if files:
87 for filearg in files:
88 if os.path.exists(filearg):
89 files_to_check.append(os.path.abspath(filearg))
90 else:
91 found = False
92 for repo_file in repo_files:
93 if repo_file.endswith(filearg):
94 found = True
95 files_to_check.append(repo_file) # could have multiple matches
96
97 if not found:
98 logger.warning("Could not find file matching argument '%s'" % filearg)
99 else:
100 # Check every python file
101 files_to_check = get_all_checkable_files()
102
103 expect(len(files_to_check) > 0, "No matching files found")
104
105 # No point in using more threads than files
106 if len(files_to_check) < num_procs:
107 num_procs = len(files_to_check)
108
109 pool = ThreadPool(num_procs)
110 results = pool.map(lambda x : _run_pylint(x, interactive), files_to_check)
111 pool.close()
112 pool.join()
113 return dict(results)
114
[end of scripts/lib/CIME/code_checker.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/scripts/lib/CIME/code_checker.py b/scripts/lib/CIME/code_checker.py
--- a/scripts/lib/CIME/code_checker.py
+++ b/scripts/lib/CIME/code_checker.py
@@ -26,7 +26,7 @@
cmd_options += " --init-hook='sys.path.extend((\"%s\",\"%s\",\"%s\"))'"%\
(os.path.join(cimeroot,"scripts","lib"),
os.path.join(cimeroot,"scripts","Tools"),
- os.path.join(cimeroot,"tools","unit_testing","python"))
+ os.path.join(cimeroot,"scripts","fortran_unit_testing","python"))
cmd = "%s %s %s" % (pylint, cmd_options, on_file)
logger.debug("pylint command is %s"%cmd)
| {"golden_diff": "diff --git a/scripts/lib/CIME/code_checker.py b/scripts/lib/CIME/code_checker.py\n--- a/scripts/lib/CIME/code_checker.py\n+++ b/scripts/lib/CIME/code_checker.py\n@@ -26,7 +26,7 @@\n cmd_options += \" --init-hook='sys.path.extend((\\\"%s\\\",\\\"%s\\\",\\\"%s\\\"))'\"%\\\n (os.path.join(cimeroot,\"scripts\",\"lib\"),\n os.path.join(cimeroot,\"scripts\",\"Tools\"),\n- os.path.join(cimeroot,\"tools\",\"unit_testing\",\"python\"))\n+ os.path.join(cimeroot,\"scripts\",\"fortran_unit_testing\",\"python\"))\n \n cmd = \"%s %s %s\" % (pylint, cmd_options, on_file)\n logger.debug(\"pylint command is %s\"%cmd)\n", "issue": "Clean up python in unit_testing\nClean up code in unit_testing/python\n", "before_files": [{"content": "\"\"\"\nLibraries for checking python code with pylint\n\"\"\"\n\nfrom CIME.XML.standard_module_setup import *\n\nfrom CIME.utils import run_cmd, run_cmd_no_fail, expect, get_cime_root, is_python_executable\n\nfrom multiprocessing.dummy import Pool as ThreadPool\nfrom distutils.spawn import find_executable\n\nlogger = logging.getLogger(__name__)\n\n###############################################################################\ndef _run_pylint(on_file, interactive):\n###############################################################################\n pylint = find_executable(\"pylint\")\n\n cmd_options = \" --disable=I,C,R,logging-not-lazy,wildcard-import,unused-wildcard-import,fixme,broad-except,bare-except,eval-used,exec-used,global-statement\"\n cimeroot = get_cime_root()\n\n if \"scripts/Tools\" in on_file:\n cmd_options +=\",relative-import\"\n\n # add init-hook option\n cmd_options += \" --init-hook='sys.path.extend((\\\"%s\\\",\\\"%s\\\",\\\"%s\\\"))'\"%\\\n (os.path.join(cimeroot,\"scripts\",\"lib\"),\n os.path.join(cimeroot,\"scripts\",\"Tools\"),\n os.path.join(cimeroot,\"tools\",\"unit_testing\",\"python\"))\n\n cmd = \"%s %s %s\" % (pylint, cmd_options, on_file)\n logger.debug(\"pylint command is %s\"%cmd)\n stat, out, err = run_cmd(cmd, verbose=False, from_dir=cimeroot)\n if stat != 0:\n if interactive:\n logger.info(\"File %s has pylint problems, please fix\\n Use command: %s\" % (on_file, cmd))\n logger.info(out + \"\\n\" + err)\n return (on_file, out + \"\\n\" + err)\n else:\n if interactive:\n logger.info(\"File %s has no pylint problems\" % on_file)\n return (on_file, \"\")\n\n###############################################################################\ndef _matches(file_path, file_ends):\n###############################################################################\n for file_end in file_ends:\n if file_path.endswith(file_end):\n return True\n\n return False\n\n###############################################################################\ndef _should_pylint_skip(filepath):\n###############################################################################\n # TODO - get rid of this\n list_of_directories_to_ignore = (\"xmlconvertors\", \"pointclm\", \"point_clm\", \"tools\", \"machines\", \"apidocs\")\n for dir_to_skip in list_of_directories_to_ignore:\n if dir_to_skip in filepath:\n return True\n\n return False\n\n###############################################################################\ndef get_all_checkable_files():\n###############################################################################\n cimeroot = get_cime_root()\n all_git_files = run_cmd_no_fail(\"git ls-files\", from_dir=cimeroot, verbose=False).splitlines()\n\n files_to_test = [item for item in all_git_files\n if ((item.endswith(\".py\") or is_python_executable(os.path.join(cimeroot, item))) and not _should_pylint_skip(item))]\n return files_to_test\n\n###############################################################################\ndef check_code(files, num_procs=10, interactive=False):\n###############################################################################\n \"\"\"\n Check all python files in the given directory\n\n Returns True if all files had no problems\n \"\"\"\n # Get list of files to check, we look to see if user-provided file argument\n # is a valid file, if not, we search the repo for a file with similar name.\n repo_files = run_cmd_no_fail('git ls-files --full-name %s' % get_cime_root(), verbose=False).splitlines()\n files_to_check = []\n if files:\n for filearg in files:\n if os.path.exists(filearg):\n files_to_check.append(os.path.abspath(filearg))\n else:\n found = False\n for repo_file in repo_files:\n if repo_file.endswith(filearg):\n found = True\n files_to_check.append(repo_file) # could have multiple matches\n\n if not found:\n logger.warning(\"Could not find file matching argument '%s'\" % filearg)\n else:\n # Check every python file\n files_to_check = get_all_checkable_files()\n\n expect(len(files_to_check) > 0, \"No matching files found\")\n\n # No point in using more threads than files\n if len(files_to_check) < num_procs:\n num_procs = len(files_to_check)\n\n pool = ThreadPool(num_procs)\n results = pool.map(lambda x : _run_pylint(x, interactive), files_to_check)\n pool.close()\n pool.join()\n return dict(results)\n", "path": "scripts/lib/CIME/code_checker.py"}]} | 1,747 | 173 |
gh_patches_debug_25521 | rasdani/github-patches | git_diff | biopython__biopython-4558 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
KeyError when using Medline.parse
### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
3.10.6 (main, Oct 7 2022, 20:19:58) [GCC 11.2.0]
CPython
Linux-4.14.330-250.540.amzn2.x86_64-x86_64-with-glibc2.31
1.82
### Expected behaviour
This should work and parse records as expected:
`records = Medline.parse(lines)`
### Actual behaviour
```
File /opt/conda/lib/python3.10/site-packages/Bio/Medline/__init__.py:175, in parse(handle)
173 record[key][-1] += line[5:] # including space using line[5:]
174 else:
--> 175 record[key].append(line[6:])
176 elif line:
177 key = line[:4].rstrip()
KeyError: 'AB'
```
### Steps to reproduce
Offending record:
```
PMID- 29939664
STAT- Publisher
CTDT- 20220621
PB - StatPearls Publishing
DP - 2023 Jan
TI - Morvan Syndrome.
BTI - StatPearls
AB - Morvan syndrome or Morvan's fibrillary chorea (MFC) is a rare constellation of
neurological symptoms, consisting of peripheral nerve hyperexcitability,
autonomic instability, and encephalopathy often associated with autoantibodies to
voltage-gated potassium channel complexes (VGKCs). On 12 April 1890, the French
physician, Dr. Augustine Marie Morvan first published a novel description of this
neurological syndrome in La Gazette Hebdomadaire de Medecine et de Chirurgie. He
called it "la choree fibrillaire," which we now know as Morvan syndrome. There
have been approximately 60 cases published in the French and other literature but
only a few in English literature since then. See table 1 in media section at the
end of this script for a review and comparison of the varied clinical features
and clinical outcomes in 20 such cases reported in English literature.
As per table 1, Morvan syndrome is
predominantly a male-dominant entity with a male to female ratio of 19 to 1. The
only female case was a rheumatoid arthritis patient on gold therapy who developed
mild Morvan syndrome features, and whose condition reverted once treatment was
discontinued. Insomnia, hyperhidrosis, dysautonomia, and myokymia were consistent
findings noted in 100% (all 20) of the patients. Whereas, hallucinations were
seen in 75% (15) of the patients and anti-voltage-gated potassium channel
antibodies (VGKC) were observed in 45% (9) of the patients. Another very
consistent finding was the conspicuous absence of seizures in 100% (all 20) of
the cases and benign findings on MRI in 100% (all 20) in contrast to Limbic
encephalitis where seizures and temporal lobe structural abnormalities on MRI are
classic findings. Myokymia was seen in 100% (all 20) of the patients, and it was
confirmed in most 80%(16) cases with EMG studies which showed spontaneous, either
repetitive or continuous muscle activity in the form of fasciculations which were
a combination doublet, triplet, multiplet, or neuromyotonic discharges. Other
sporadic findings were elevated manganese levels in 5% (1), oligoclonal bands in
cerebrospinal fluid (CSF) in 15% (3), thymoma in 40% (8), Acetylcholine receptor
(AchR) antibodies in 30% (6) of patients. However, AchR antibodies in association
with myasthenic features were seen in only 10% (2) of the patients. Twenty
percent (4) of the patients had AchR antibodies without myasthenic features.
Treatment modalities tried with varied effectiveness were thymectomy in 25% (5),
anticonvulsant therapy in 45% (9), immunosuppression in 50% (10), and IVIG in 20%
(4) of the patients. The most effective treatment was plasma exchange which was
tried in 55% (11) of the patients, all of whom except one patient showed dramatic
improvement. Treatment effectiveness was even more significant when
immunosuppression and plasma exchange was tried together. Death was the outcome
in only 20% (4) of the patients.
CI - Copyright (c) 2023, StatPearls Publishing LLC.
FAU - Masood, Wajeed
AU - Masood W
AD - Methodist University, Campbell University School of Osteopathic Medicine.
FAU - Sitammagari, Kranthi K
AU - Sitammagari KK
AD - Methodist Un, Campbell Un School of OM
LA - eng
PT - Study Guide
PT - Book Chapter
PL - Treasure Island (FL)
COIS- Disclosure: Wajeed Masood declares no relevant financial relationships with
ineligible companies. Disclosure: Kranthi Sitammagari declares no relevant
financial relationships with ineligible companies.
EDAT- 2022/06/21 00:00
CRDT- 2022/06/21 00:00
AID - NBK507887 [bookaccession]
```
I believe it might be failing due to the extra blank line in the abstract.
</issue>
<code>
[start of Bio/Medline/__init__.py]
1 # Copyright 1999 by Jeffrey Chang. All rights reserved.
2 #
3 # This file is part of the Biopython distribution and governed by your
4 # choice of the "Biopython License Agreement" or the "BSD 3-Clause License".
5 # Please see the LICENSE file that should have been included as part of this
6 # package.
7
8 """Code to work with Medline from the NCBI.
9
10 Classes:
11 - Record A dictionary holding Medline data.
12
13 Functions:
14 - read Reads one Medline record
15 - parse Allows you to iterate over a bunch of Medline records
16
17 """
18
19
20 class Record(dict):
21 """A dictionary holding information from a Medline record.
22
23 All data are stored under the mnemonic appearing in the Medline
24 file. These mnemonics have the following interpretations:
25
26 ========= ==============================
27 Mnemonic Description
28 --------- ------------------------------
29 AB Abstract
30 CI Copyright Information
31 AD Affiliation
32 IRAD Investigator Affiliation
33 AID Article Identifier
34 AU Author
35 FAU Full Author
36 CN Corporate Author
37 DCOM Date Completed
38 DA Date Created
39 LR Date Last Revised
40 DEP Date of Electronic Publication
41 DP Date of Publication
42 EDAT Entrez Date
43 GS Gene Symbol
44 GN General Note
45 GR Grant Number
46 IR Investigator Name
47 FIR Full Investigator Name
48 IS ISSN
49 IP Issue
50 TA Journal Title Abbreviation
51 JT Journal Title
52 LA Language
53 LID Location Identifier
54 MID Manuscript Identifier
55 MHDA MeSH Date
56 MH MeSH Terms
57 JID NLM Unique ID
58 RF Number of References
59 OAB Other Abstract
60 OCI Other Copyright Information
61 OID Other ID
62 OT Other Term
63 OTO Other Term Owner
64 OWN Owner
65 PG Pagination
66 PS Personal Name as Subject
67 FPS Full Personal Name as Subject
68 PL Place of Publication
69 PHST Publication History Status
70 PST Publication Status
71 PT Publication Type
72 PUBM Publishing Model
73 PMC PubMed Central Identifier
74 PMID PubMed Unique Identifier
75 RN Registry Number/EC Number
76 NM Substance Name
77 SI Secondary Source ID
78 SO Source
79 SFM Space Flight Mission
80 STAT Status
81 SB Subset
82 TI Title
83 TT Transliterated Title
84 VI Volume
85 CON Comment on
86 CIN Comment in
87 EIN Erratum in
88 EFR Erratum for
89 CRI Corrected and Republished in
90 CRF Corrected and Republished from
91 PRIN Partial retraction in
92 PROF Partial retraction of
93 RPI Republished in
94 RPF Republished from
95 RIN Retraction in
96 ROF Retraction of
97 UIN Update in
98 UOF Update of
99 SPIN Summary for patients in
100 ORI Original report in
101 ========= ==============================
102
103 """
104
105
106 def parse(handle):
107 """Read Medline records one by one from the handle.
108
109 The handle is either is a Medline file, a file-like object, or a list
110 of lines describing one or more Medline records.
111
112 Typical usage::
113
114 >>> from Bio import Medline
115 >>> with open("Medline/pubmed_result2.txt") as handle:
116 ... records = Medline.parse(handle)
117 ... for record in records:
118 ... print(record['TI'])
119 ...
120 A high level interface to SCOP and ASTRAL ...
121 GenomeDiagram: a python package for the visualization of ...
122 Open source clustering software.
123 PDB file parser and structure class implemented in Python.
124
125 """
126 # These keys point to string values
127 textkeys = (
128 "ID",
129 "PMID",
130 "SO",
131 "RF",
132 "NI",
133 "JC",
134 "TA",
135 "IS",
136 "CY",
137 "TT",
138 "CA",
139 "IP",
140 "VI",
141 "DP",
142 "YR",
143 "PG",
144 "LID",
145 "DA",
146 "LR",
147 "OWN",
148 "STAT",
149 "DCOM",
150 "PUBM",
151 "DEP",
152 "PL",
153 "JID",
154 "SB",
155 "PMC",
156 "EDAT",
157 "MHDA",
158 "PST",
159 "AB",
160 "EA",
161 "TI",
162 "JT",
163 )
164 handle = iter(handle)
165
166 key = ""
167 record = Record()
168 for line in handle:
169 line = line.rstrip()
170 if line[:6] == " ": # continuation line
171 if key in ["MH", "AD"]:
172 # Multi-line MESH term, want to append to last entry in list
173 record[key][-1] += line[5:] # including space using line[5:]
174 else:
175 record[key].append(line[6:])
176 elif line:
177 key = line[:4].rstrip()
178 if key not in record:
179 record[key] = []
180 record[key].append(line[6:])
181 elif record:
182 # Join each list of strings into one string.
183 for key in record:
184 if key in textkeys:
185 record[key] = " ".join(record[key])
186 yield record
187 record = Record()
188 if record: # catch last one
189 for key in record:
190 if key in textkeys:
191 record[key] = " ".join(record[key])
192 yield record
193
194
195 def read(handle):
196 """Read a single Medline record from the handle.
197
198 The handle is either is a Medline file, a file-like object, or a list
199 of lines describing a Medline record.
200
201 Typical usage:
202
203 >>> from Bio import Medline
204 >>> with open("Medline/pubmed_result1.txt") as handle:
205 ... record = Medline.read(handle)
206 ... print(record['TI'])
207 ...
208 The Bio* toolkits--a brief overview.
209
210 """
211 records = parse(handle)
212 return next(records)
213
214
215 if __name__ == "__main__":
216 from Bio._utils import run_doctest
217
218 run_doctest()
219
[end of Bio/Medline/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/Bio/Medline/__init__.py b/Bio/Medline/__init__.py
--- a/Bio/Medline/__init__.py
+++ b/Bio/Medline/__init__.py
@@ -166,19 +166,26 @@
key = ""
record = Record()
for line in handle:
- line = line.rstrip()
if line[:6] == " ": # continuation line
+ line = line.rstrip()
+ if line == "":
+ # All blank continuation lines should be considered a new line.
+ # See issue #4557
+ line = " \n"
+
if key in ["MH", "AD"]:
# Multi-line MESH term, want to append to last entry in list
record[key][-1] += line[5:] # including space using line[5:]
else:
record[key].append(line[6:])
- elif line:
+ elif line != "\n" and line != "\r\n":
+ line = line.rstrip()
key = line[:4].rstrip()
if key not in record:
record[key] = []
record[key].append(line[6:])
elif record:
+ # End of the record
# Join each list of strings into one string.
for key in record:
if key in textkeys:
| {"golden_diff": "diff --git a/Bio/Medline/__init__.py b/Bio/Medline/__init__.py\n--- a/Bio/Medline/__init__.py\n+++ b/Bio/Medline/__init__.py\n@@ -166,19 +166,26 @@\n key = \"\"\n record = Record()\n for line in handle:\n- line = line.rstrip()\n if line[:6] == \" \": # continuation line\n+ line = line.rstrip()\n+ if line == \"\":\n+ # All blank continuation lines should be considered a new line.\n+ # See issue #4557\n+ line = \" \\n\"\n+\n if key in [\"MH\", \"AD\"]:\n # Multi-line MESH term, want to append to last entry in list\n record[key][-1] += line[5:] # including space using line[5:]\n else:\n record[key].append(line[6:])\n- elif line:\n+ elif line != \"\\n\" and line != \"\\r\\n\":\n+ line = line.rstrip()\n key = line[:4].rstrip()\n if key not in record:\n record[key] = []\n record[key].append(line[6:])\n elif record:\n+ # End of the record\n # Join each list of strings into one string.\n for key in record:\n if key in textkeys:\n", "issue": "KeyError when using Medline.parse\n### Setup\r\n\r\nI am reporting a problem with Biopython version, Python version, and operating\r\nsystem as follows:\r\n\r\n3.10.6 (main, Oct 7 2022, 20:19:58) [GCC 11.2.0]\r\nCPython\r\nLinux-4.14.330-250.540.amzn2.x86_64-x86_64-with-glibc2.31\r\n1.82\r\n\r\n### Expected behaviour\r\n\r\nThis should work and parse records as expected:\r\n`records = Medline.parse(lines)`\r\n\r\n### Actual behaviour\r\n```\r\nFile /opt/conda/lib/python3.10/site-packages/Bio/Medline/__init__.py:175, in parse(handle)\r\n 173 record[key][-1] += line[5:] # including space using line[5:]\r\n 174 else:\r\n--> 175 record[key].append(line[6:])\r\n 176 elif line:\r\n 177 key = line[:4].rstrip()\r\n\r\nKeyError: 'AB'\r\n```\r\n\r\n### Steps to reproduce\r\n\r\nOffending record:\r\n```\r\nPMID- 29939664\r\nSTAT- Publisher\r\nCTDT- 20220621\r\nPB - StatPearls Publishing\r\nDP - 2023 Jan\r\nTI - Morvan Syndrome.\r\nBTI - StatPearls\r\nAB - Morvan syndrome or Morvan's fibrillary chorea (MFC) is a rare constellation of \r\n neurological symptoms, consisting of peripheral nerve hyperexcitability, \r\n autonomic instability, and encephalopathy often associated with autoantibodies to \r\n voltage-gated potassium channel complexes (VGKCs). On 12 April 1890, the French \r\n physician, Dr. Augustine Marie Morvan first published a novel description of this \r\n neurological syndrome in La Gazette Hebdomadaire de Medecine et de Chirurgie. He \r\n called it \"la choree fibrillaire,\" which we now know as Morvan syndrome. There \r\n have been approximately 60 cases published in the French and other literature but \r\n only a few in English literature since then. See table 1 in media section at the \r\n end of this script for a review and comparison of the varied clinical features \r\n and clinical outcomes in 20 such cases reported in English literature. \r\n \r\n As per table 1, Morvan syndrome is \r\n predominantly a male-dominant entity with a male to female ratio of 19 to 1. The \r\n only female case was a rheumatoid arthritis patient on gold therapy who developed \r\n mild Morvan syndrome features, and whose condition reverted once treatment was \r\n discontinued. Insomnia, hyperhidrosis, dysautonomia, and myokymia were consistent \r\n findings noted in 100% (all 20) of the patients. Whereas, hallucinations were \r\n seen in 75% (15) of the patients and anti-voltage-gated potassium channel \r\n antibodies (VGKC) were observed in 45% (9) of the patients. Another very \r\n consistent finding was the conspicuous absence of seizures in 100% (all 20) of \r\n the cases and benign findings on MRI in 100% (all 20) in contrast to Limbic \r\n encephalitis where seizures and temporal lobe structural abnormalities on MRI are \r\n classic findings. Myokymia was seen in 100% (all 20) of the patients, and it was \r\n confirmed in most 80%(16) cases with EMG studies which showed spontaneous, either \r\n repetitive or continuous muscle activity in the form of fasciculations which were \r\n a combination doublet, triplet, multiplet, or neuromyotonic discharges. Other \r\n sporadic findings were elevated manganese levels in 5% (1), oligoclonal bands in \r\n cerebrospinal fluid (CSF) in 15% (3), thymoma in 40% (8), Acetylcholine receptor \r\n (AchR) antibodies in 30% (6) of patients. However, AchR antibodies in association \r\n with myasthenic features were seen in only 10% (2) of the patients. Twenty \r\n percent (4) of the patients had AchR antibodies without myasthenic features. \r\n Treatment modalities tried with varied effectiveness were thymectomy in 25% (5), \r\n anticonvulsant therapy in 45% (9), immunosuppression in 50% (10), and IVIG in 20% \r\n (4) of the patients. The most effective treatment was plasma exchange which was \r\n tried in 55% (11) of the patients, all of whom except one patient showed dramatic \r\n improvement. Treatment effectiveness was even more significant when \r\n immunosuppression and plasma exchange was tried together. Death was the outcome \r\n in only 20% (4) of the patients.\r\nCI - Copyright (c) 2023, StatPearls Publishing LLC.\r\nFAU - Masood, Wajeed\r\nAU - Masood W\r\nAD - Methodist University, Campbell University School of Osteopathic Medicine.\r\nFAU - Sitammagari, Kranthi K\r\nAU - Sitammagari KK\r\nAD - Methodist Un, Campbell Un School of OM\r\nLA - eng\r\nPT - Study Guide\r\nPT - Book Chapter\r\nPL - Treasure Island (FL)\r\nCOIS- Disclosure: Wajeed Masood declares no relevant financial relationships with \r\n ineligible companies. Disclosure: Kranthi Sitammagari declares no relevant \r\n financial relationships with ineligible companies.\r\nEDAT- 2022/06/21 00:00\r\nCRDT- 2022/06/21 00:00\r\nAID - NBK507887 [bookaccession]\r\n```\r\n\r\nI believe it might be failing due to the extra blank line in the abstract.\n", "before_files": [{"content": "# Copyright 1999 by Jeffrey Chang. All rights reserved.\n#\n# This file is part of the Biopython distribution and governed by your\n# choice of the \"Biopython License Agreement\" or the \"BSD 3-Clause License\".\n# Please see the LICENSE file that should have been included as part of this\n# package.\n\n\"\"\"Code to work with Medline from the NCBI.\n\nClasses:\n - Record A dictionary holding Medline data.\n\nFunctions:\n - read Reads one Medline record\n - parse Allows you to iterate over a bunch of Medline records\n\n\"\"\"\n\n\nclass Record(dict):\n \"\"\"A dictionary holding information from a Medline record.\n\n All data are stored under the mnemonic appearing in the Medline\n file. These mnemonics have the following interpretations:\n\n ========= ==============================\n Mnemonic Description\n --------- ------------------------------\n AB Abstract\n CI Copyright Information\n AD Affiliation\n IRAD Investigator Affiliation\n AID Article Identifier\n AU Author\n FAU Full Author\n CN Corporate Author\n DCOM Date Completed\n DA Date Created\n LR Date Last Revised\n DEP Date of Electronic Publication\n DP Date of Publication\n EDAT Entrez Date\n GS Gene Symbol\n GN General Note\n GR Grant Number\n IR Investigator Name\n FIR Full Investigator Name\n IS ISSN\n IP Issue\n TA Journal Title Abbreviation\n JT Journal Title\n LA Language\n LID Location Identifier\n MID Manuscript Identifier\n MHDA MeSH Date\n MH MeSH Terms\n JID NLM Unique ID\n RF Number of References\n OAB Other Abstract\n OCI Other Copyright Information\n OID Other ID\n OT Other Term\n OTO Other Term Owner\n OWN Owner\n PG Pagination\n PS Personal Name as Subject\n FPS Full Personal Name as Subject\n PL Place of Publication\n PHST Publication History Status\n PST Publication Status\n PT Publication Type\n PUBM Publishing Model\n PMC PubMed Central Identifier\n PMID PubMed Unique Identifier\n RN Registry Number/EC Number\n NM Substance Name\n SI Secondary Source ID\n SO Source\n SFM Space Flight Mission\n STAT Status\n SB Subset\n TI Title\n TT Transliterated Title\n VI Volume\n CON Comment on\n CIN Comment in\n EIN Erratum in\n EFR Erratum for\n CRI Corrected and Republished in\n CRF Corrected and Republished from\n PRIN Partial retraction in\n PROF Partial retraction of\n RPI Republished in\n RPF Republished from\n RIN Retraction in\n ROF Retraction of\n UIN Update in\n UOF Update of\n SPIN Summary for patients in\n ORI Original report in\n ========= ==============================\n\n \"\"\"\n\n\ndef parse(handle):\n \"\"\"Read Medline records one by one from the handle.\n\n The handle is either is a Medline file, a file-like object, or a list\n of lines describing one or more Medline records.\n\n Typical usage::\n\n >>> from Bio import Medline\n >>> with open(\"Medline/pubmed_result2.txt\") as handle:\n ... records = Medline.parse(handle)\n ... for record in records:\n ... print(record['TI'])\n ...\n A high level interface to SCOP and ASTRAL ...\n GenomeDiagram: a python package for the visualization of ...\n Open source clustering software.\n PDB file parser and structure class implemented in Python.\n\n \"\"\"\n # These keys point to string values\n textkeys = (\n \"ID\",\n \"PMID\",\n \"SO\",\n \"RF\",\n \"NI\",\n \"JC\",\n \"TA\",\n \"IS\",\n \"CY\",\n \"TT\",\n \"CA\",\n \"IP\",\n \"VI\",\n \"DP\",\n \"YR\",\n \"PG\",\n \"LID\",\n \"DA\",\n \"LR\",\n \"OWN\",\n \"STAT\",\n \"DCOM\",\n \"PUBM\",\n \"DEP\",\n \"PL\",\n \"JID\",\n \"SB\",\n \"PMC\",\n \"EDAT\",\n \"MHDA\",\n \"PST\",\n \"AB\",\n \"EA\",\n \"TI\",\n \"JT\",\n )\n handle = iter(handle)\n\n key = \"\"\n record = Record()\n for line in handle:\n line = line.rstrip()\n if line[:6] == \" \": # continuation line\n if key in [\"MH\", \"AD\"]:\n # Multi-line MESH term, want to append to last entry in list\n record[key][-1] += line[5:] # including space using line[5:]\n else:\n record[key].append(line[6:])\n elif line:\n key = line[:4].rstrip()\n if key not in record:\n record[key] = []\n record[key].append(line[6:])\n elif record:\n # Join each list of strings into one string.\n for key in record:\n if key in textkeys:\n record[key] = \" \".join(record[key])\n yield record\n record = Record()\n if record: # catch last one\n for key in record:\n if key in textkeys:\n record[key] = \" \".join(record[key])\n yield record\n\n\ndef read(handle):\n \"\"\"Read a single Medline record from the handle.\n\n The handle is either is a Medline file, a file-like object, or a list\n of lines describing a Medline record.\n\n Typical usage:\n\n >>> from Bio import Medline\n >>> with open(\"Medline/pubmed_result1.txt\") as handle:\n ... record = Medline.read(handle)\n ... print(record['TI'])\n ...\n The Bio* toolkits--a brief overview.\n\n \"\"\"\n records = parse(handle)\n return next(records)\n\n\nif __name__ == \"__main__\":\n from Bio._utils import run_doctest\n\n run_doctest()\n", "path": "Bio/Medline/__init__.py"}]} | 3,853 | 302 |
gh_patches_debug_452 | rasdani/github-patches | git_diff | Flexget__Flexget-2652 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Dependencies on non pure Python modules
Hi,
Sorry for [x-posting](https://discuss.flexget.com/t/dependencies-on-non-pure-python-modules/5086). This is kind of a development issue so it might fit here better than in the forum. Feel free to just close this and reply on Discourse.
When upgrading Flexget I stumbled upon the fact that now it depends on Pillow, as per:
https://github.com/Flexget/Flexget/pull/2621
My Flexget runs on an embedded aarch64 device so every time you add a dep on a module that links against C libraries (Pillow depends on zlib and libjpeg) I have to cross compile the necessary native extensions, distribute them etc. Either that or manually installing a skimmed `requirements.txt` and finally installing Flexget passing `--no-dependencies` to `pip install`.
Does adding a tray icon justify this hassle for users? No saying that’s wrong of course, just trying to bring to your attention this use case and the potential annoyance for users.
Could perhaps these things be made optional at install/build time by relaxing the hard dependency?
Thanks.
Dependencies on non pure Python modules
Hi,
Sorry for [x-posting](https://discuss.flexget.com/t/dependencies-on-non-pure-python-modules/5086). This is kind of a development issue so it might fit here better than in the forum. Feel free to just close this and reply on Discourse.
When upgrading Flexget I stumbled upon the fact that now it depends on Pillow, as per:
https://github.com/Flexget/Flexget/pull/2621
My Flexget runs on an embedded aarch64 device so every time you add a dep on a module that links against C libraries (Pillow depends on zlib and libjpeg) I have to cross compile the necessary native extensions, distribute them etc. Either that or manually installing a skimmed `requirements.txt` and finally installing Flexget passing `--no-dependencies` to `pip install`.
Does adding a tray icon justify this hassle for users? No saying that’s wrong of course, just trying to bring to your attention this use case and the potential annoyance for users.
Could perhaps these things be made optional at install/build time by relaxing the hard dependency?
Thanks.
</issue>
<code>
[start of flexget/tray_icon.py]
1 import logging
2 import webbrowser
3 from functools import partial, wraps
4 from pathlib import Path
5 from typing import List, Optional
6
7 from loguru import logger
8
9 from flexget import __version__
10
11 logger = logger.bind(name='tray_icon')
12
13 try:
14 # If we are running outside of a graphical environment, these imports will fail
15 from PIL import Image
16 from pystray import Icon, Menu, MenuItem
17
18 _import_success = True
19 except Exception as e:
20 logger.debug('Could not import pystray: {}', e)
21 _import_success = False
22
23
24 def check_if_tray_is_active(f):
25 @wraps(f)
26 def wrapped(self, *args, **kwargs):
27 if not self.active:
28 return
29 return f(self, *args, **kwargs)
30
31 return wrapped
32
33
34 image_path = Path(__file__).parent / 'resources' / 'flexget.png'
35
36
37 class TrayIcon:
38 def __init__(self, path_to_image: Path = image_path):
39 # Silence PIL noisy logging
40 logging.getLogger('PIL.PngImagePlugin').setLevel(logging.INFO)
41 logging.getLogger('PIL.Image').setLevel(logging.INFO)
42
43 self.path_to_image: Path = path_to_image
44 self.icon: Optional['Icon'] = None
45 self._menu: Optional['Menu'] = None
46 self.menu_items: List['MenuItem'] = []
47
48 self.active: bool = _import_success
49 self.running: bool = False
50
51 self.add_core_menu_items()
52
53 @check_if_tray_is_active
54 def add_menu_item(
55 self,
56 text: str = None,
57 action: callable = None,
58 menu_item: 'MenuItem' = None,
59 index: int = None,
60 **kwargs,
61 ):
62 """
63 Add a menu item byt passing its text and function, or pass a created MenuItem. Force position by sending index
64 """
65 if not any(v for v in (menu_item, text)):
66 raise ValueError(f"Either 'text' or 'menu_item' are required")
67
68 menu_item = menu_item or MenuItem(text=text, action=action, **kwargs)
69 if index is not None:
70 self.menu_items.insert(index, menu_item)
71 else:
72 self.menu_items.append(menu_item)
73
74 @check_if_tray_is_active
75 def add_menu_separator(self, index: int = None):
76 self.add_menu_item(menu_item=Menu.SEPARATOR, index=index)
77
78 def add_core_menu_items(self):
79 open_web = partial(webbrowser.open)
80 self.add_menu_item(text=f'Flexget {__version__}', enabled=False)
81 self.add_menu_separator()
82 self.add_menu_item(text='Homepage', action=partial(open_web, 'https://flexget.com/'))
83 self.add_menu_item(text='Forum', action=partial(open_web, 'https://discuss.flexget.com/'))
84
85 @property
86 def menu(self) -> 'Menu':
87 # This is lazy loaded since we'd like to delay the menu build until the tray is requested to run
88 if not self._menu:
89 self._menu = Menu(*self.menu_items)
90 return self._menu
91
92 @check_if_tray_is_active
93 def run(self):
94 """Run the tray icon. Must be run from the main thread and is blocking"""
95 try:
96 logger.verbose('Starting tray icon')
97 self.icon = Icon('Flexget', Image.open(self.path_to_image), menu=self.menu)
98 self.running = True
99 self.icon.run()
100 except Exception as e:
101 logger.warning('Could not run tray icon: {}', e)
102 self.running = False
103
104 @check_if_tray_is_active
105 def stop(self):
106 if not self.running:
107 return
108
109 logger.verbose('Stopping tray icon')
110 self.icon.stop()
111 self.running = False
112
113
114 tray_icon = TrayIcon()
115
[end of flexget/tray_icon.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/flexget/tray_icon.py b/flexget/tray_icon.py
--- a/flexget/tray_icon.py
+++ b/flexget/tray_icon.py
@@ -17,7 +17,7 @@
_import_success = True
except Exception as e:
- logger.debug('Could not import pystray: {}', e)
+ logger.debug('Could not load tray icon: {}', e)
_import_success = False
| {"golden_diff": "diff --git a/flexget/tray_icon.py b/flexget/tray_icon.py\n--- a/flexget/tray_icon.py\n+++ b/flexget/tray_icon.py\n@@ -17,7 +17,7 @@\n \n _import_success = True\n except Exception as e:\n- logger.debug('Could not import pystray: {}', e)\n+ logger.debug('Could not load tray icon: {}', e)\n _import_success = False\n", "issue": "Dependencies on non pure Python modules\nHi,\r\n\r\nSorry for [x-posting](https://discuss.flexget.com/t/dependencies-on-non-pure-python-modules/5086). This is kind of a development issue so it might fit here better than in the forum. Feel free to just close this and reply on Discourse.\r\n\r\nWhen upgrading Flexget I stumbled upon the fact that now it depends on Pillow, as per:\r\n\r\nhttps://github.com/Flexget/Flexget/pull/2621\r\n\r\nMy Flexget runs on an embedded aarch64 device so every time you add a dep on a module that links against C libraries (Pillow depends on zlib and libjpeg) I have to cross compile the necessary native extensions, distribute them etc. Either that or manually installing a skimmed `requirements.txt` and finally installing Flexget passing `--no-dependencies` to `pip install`.\r\n\r\nDoes adding a tray icon justify this hassle for users? No saying that\u2019s wrong of course, just trying to bring to your attention this use case and the potential annoyance for users.\r\n\r\nCould perhaps these things be made optional at install/build time by relaxing the hard dependency?\r\n\r\nThanks.\nDependencies on non pure Python modules\nHi,\r\n\r\nSorry for [x-posting](https://discuss.flexget.com/t/dependencies-on-non-pure-python-modules/5086). This is kind of a development issue so it might fit here better than in the forum. Feel free to just close this and reply on Discourse.\r\n\r\nWhen upgrading Flexget I stumbled upon the fact that now it depends on Pillow, as per:\r\n\r\nhttps://github.com/Flexget/Flexget/pull/2621\r\n\r\nMy Flexget runs on an embedded aarch64 device so every time you add a dep on a module that links against C libraries (Pillow depends on zlib and libjpeg) I have to cross compile the necessary native extensions, distribute them etc. Either that or manually installing a skimmed `requirements.txt` and finally installing Flexget passing `--no-dependencies` to `pip install`.\r\n\r\nDoes adding a tray icon justify this hassle for users? No saying that\u2019s wrong of course, just trying to bring to your attention this use case and the potential annoyance for users.\r\n\r\nCould perhaps these things be made optional at install/build time by relaxing the hard dependency?\r\n\r\nThanks.\n", "before_files": [{"content": "import logging\nimport webbrowser\nfrom functools import partial, wraps\nfrom pathlib import Path\nfrom typing import List, Optional\n\nfrom loguru import logger\n\nfrom flexget import __version__\n\nlogger = logger.bind(name='tray_icon')\n\ntry:\n # If we are running outside of a graphical environment, these imports will fail\n from PIL import Image\n from pystray import Icon, Menu, MenuItem\n\n _import_success = True\nexcept Exception as e:\n logger.debug('Could not import pystray: {}', e)\n _import_success = False\n\n\ndef check_if_tray_is_active(f):\n @wraps(f)\n def wrapped(self, *args, **kwargs):\n if not self.active:\n return\n return f(self, *args, **kwargs)\n\n return wrapped\n\n\nimage_path = Path(__file__).parent / 'resources' / 'flexget.png'\n\n\nclass TrayIcon:\n def __init__(self, path_to_image: Path = image_path):\n # Silence PIL noisy logging\n logging.getLogger('PIL.PngImagePlugin').setLevel(logging.INFO)\n logging.getLogger('PIL.Image').setLevel(logging.INFO)\n\n self.path_to_image: Path = path_to_image\n self.icon: Optional['Icon'] = None\n self._menu: Optional['Menu'] = None\n self.menu_items: List['MenuItem'] = []\n\n self.active: bool = _import_success\n self.running: bool = False\n\n self.add_core_menu_items()\n\n @check_if_tray_is_active\n def add_menu_item(\n self,\n text: str = None,\n action: callable = None,\n menu_item: 'MenuItem' = None,\n index: int = None,\n **kwargs,\n ):\n \"\"\"\n Add a menu item byt passing its text and function, or pass a created MenuItem. Force position by sending index\n \"\"\"\n if not any(v for v in (menu_item, text)):\n raise ValueError(f\"Either 'text' or 'menu_item' are required\")\n\n menu_item = menu_item or MenuItem(text=text, action=action, **kwargs)\n if index is not None:\n self.menu_items.insert(index, menu_item)\n else:\n self.menu_items.append(menu_item)\n\n @check_if_tray_is_active\n def add_menu_separator(self, index: int = None):\n self.add_menu_item(menu_item=Menu.SEPARATOR, index=index)\n\n def add_core_menu_items(self):\n open_web = partial(webbrowser.open)\n self.add_menu_item(text=f'Flexget {__version__}', enabled=False)\n self.add_menu_separator()\n self.add_menu_item(text='Homepage', action=partial(open_web, 'https://flexget.com/'))\n self.add_menu_item(text='Forum', action=partial(open_web, 'https://discuss.flexget.com/'))\n\n @property\n def menu(self) -> 'Menu':\n # This is lazy loaded since we'd like to delay the menu build until the tray is requested to run\n if not self._menu:\n self._menu = Menu(*self.menu_items)\n return self._menu\n\n @check_if_tray_is_active\n def run(self):\n \"\"\"Run the tray icon. Must be run from the main thread and is blocking\"\"\"\n try:\n logger.verbose('Starting tray icon')\n self.icon = Icon('Flexget', Image.open(self.path_to_image), menu=self.menu)\n self.running = True\n self.icon.run()\n except Exception as e:\n logger.warning('Could not run tray icon: {}', e)\n self.running = False\n\n @check_if_tray_is_active\n def stop(self):\n if not self.running:\n return\n\n logger.verbose('Stopping tray icon')\n self.icon.stop()\n self.running = False\n\n\ntray_icon = TrayIcon()\n", "path": "flexget/tray_icon.py"}]} | 2,095 | 103 |
gh_patches_debug_25686 | rasdani/github-patches | git_diff | modin-project__modin-367 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
AttributeError: module 'modin.pandas' has no attribute 'crosstab'
### Describe the problem
<!-- Describe the problem clearly here. -->
`crosstab` is not currently in the `modin.pandas` module. We can default to pandas for this.
### Source code / logs
```python
import modin.pandas as pd
pd.crosstab(args)
```
<!-- Include any logs or source code that would be helpful to diagnose the problem. If including tracebacks, please include the full traceback. Large logs and files should be attached. Try to provide a reproducible test case that is the bare minimum necessary to generate the problem. -->
</issue>
<code>
[start of modin/pandas/reshape.py]
1 from __future__ import absolute_import
2 from __future__ import division
3 from __future__ import print_function
4
5 import pandas
6 from pandas.core.dtypes.common import is_list_like
7
8 from .dataframe import DataFrame
9
10
11 def get_dummies(
12 data,
13 prefix=None,
14 prefix_sep="_",
15 dummy_na=False,
16 columns=None,
17 sparse=False,
18 drop_first=False,
19 ):
20 """Convert categorical variable into indicator variables.
21
22 Args:
23 data (array-like, Series, or DataFrame): data to encode.
24 prefix (string, [string]): Prefix to apply to each encoded column
25 label.
26 prefix_sep (string, [string]): Separator between prefix and value.
27 dummy_na (bool): Add a column to indicate NaNs.
28 columns: Which columns to encode.
29 sparse (bool): Not Implemented: If True, returns SparseDataFrame.
30 drop_first (bool): Whether to remove the first level of encoded data.
31
32 Returns:
33 DataFrame or one-hot encoded data.
34 """
35 if sparse:
36 raise NotImplementedError(
37 "SparseDataFrame is not implemented. "
38 "To contribute to Modin, please visit "
39 "github.com/modin-project/modin."
40 )
41 if not isinstance(data, DataFrame):
42 return pandas.get_dummies(
43 data,
44 prefix=prefix,
45 prefix_sep=prefix_sep,
46 dummy_na=dummy_na,
47 columns=columns,
48 sparse=sparse,
49 drop_first=drop_first,
50 )
51 if isinstance(data, DataFrame):
52 df = data
53 elif is_list_like(data):
54 df = DataFrame(data)
55
56 new_manager = df._query_compiler.get_dummies(
57 columns,
58 prefix=prefix,
59 prefix_sep=prefix_sep,
60 dummy_na=dummy_na,
61 drop_first=drop_first,
62 )
63 return DataFrame(query_compiler=new_manager)
64
65
66 def melt(
67 frame,
68 id_vars=None,
69 value_vars=None,
70 var_name=None,
71 value_name="value",
72 col_level=None,
73 ):
74 return frame.melt(
75 id_vars=id_vars,
76 value_vars=value_vars,
77 var_name=var_name,
78 value_name=value_name,
79 col_level=col_level,
80 )
81
[end of modin/pandas/reshape.py]
[start of modin/pandas/__init__.py]
1 from __future__ import absolute_import
2 from __future__ import division
3 from __future__ import print_function
4
5 # TODO: In the future `set_option` or similar needs to run on every node
6 # in order to keep all pandas instances across nodes consistent
7 import pandas
8 from pandas import (
9 eval,
10 unique,
11 value_counts,
12 cut,
13 to_numeric,
14 factorize,
15 test,
16 qcut,
17 match,
18 Panel,
19 date_range,
20 period_range,
21 Index,
22 MultiIndex,
23 CategoricalIndex,
24 Series,
25 bdate_range,
26 DatetimeIndex,
27 Timedelta,
28 Timestamp,
29 to_timedelta,
30 set_eng_float_format,
31 set_option,
32 NaT,
33 PeriodIndex,
34 Categorical,
35 )
36 import threading
37 import os
38 import ray
39
40 from .. import __version__
41 from .concat import concat
42 from .dataframe import DataFrame
43 from .datetimes import to_datetime
44 from .io import (
45 read_csv,
46 read_parquet,
47 read_json,
48 read_html,
49 read_clipboard,
50 read_excel,
51 read_hdf,
52 read_feather,
53 read_msgpack,
54 read_stata,
55 read_sas,
56 read_pickle,
57 read_sql,
58 read_gbq,
59 read_table,
60 )
61 from .reshape import get_dummies, melt
62 from .general import isna, merge, pivot_table
63 from .. import __execution_engine__ as execution_engine
64
65 __pandas_version__ = "0.23.4"
66
67 if pandas.__version__ != __pandas_version__:
68 raise ImportError(
69 "The pandas version installed does not match the required pandas "
70 "version in Modin. Please install pandas {} to use "
71 "Modin.".format(__pandas_version__)
72 )
73
74 # Set this so that Pandas doesn't try to multithread by itself
75 os.environ["OMP_NUM_THREADS"] = "1"
76 num_cpus = 1
77
78 if execution_engine == "Ray":
79 try:
80 if threading.current_thread().name == "MainThread":
81 ray.init(
82 redirect_output=True,
83 include_webui=False,
84 redirect_worker_output=True,
85 ignore_reinit_error=True,
86 )
87 num_cpus = ray.global_state.cluster_resources()["CPU"]
88 except AssertionError:
89 pass
90 elif execution_engine == "Dask":
91 from distributed.client import _get_global_client
92
93 if threading.current_thread().name == "MainThread":
94 # initialize the dask client
95 client = _get_global_client()
96 if client is None:
97 from distributed import Client
98
99 client = Client()
100 num_cpus = sum(client.ncores().values())
101 elif execution_engine != "Python":
102 raise ImportError("Unrecognized execution engine: {}.".format(execution_engine))
103
104 DEFAULT_NPARTITIONS = max(4, int(num_cpus))
105
106 __all__ = [
107 "DataFrame",
108 "Series",
109 "read_csv",
110 "read_parquet",
111 "read_json",
112 "read_html",
113 "read_clipboard",
114 "read_excel",
115 "read_hdf",
116 "read_feather",
117 "read_msgpack",
118 "read_stata",
119 "read_sas",
120 "read_pickle",
121 "read_sql",
122 "read_gbq",
123 "read_table",
124 "concat",
125 "eval",
126 "unique",
127 "value_counts",
128 "cut",
129 "to_numeric",
130 "factorize",
131 "test",
132 "qcut",
133 "match",
134 "to_datetime",
135 "get_dummies",
136 "isna",
137 "merge",
138 "pivot_table",
139 "Panel",
140 "date_range",
141 "Index",
142 "MultiIndex",
143 "Series",
144 "bdate_range",
145 "period_range",
146 "DatetimeIndex",
147 "to_timedelta",
148 "set_eng_float_format",
149 "set_option",
150 "CategoricalIndex",
151 "Timedelta",
152 "Timestamp",
153 "NaT",
154 "PeriodIndex",
155 "Categorical",
156 "__version__",
157 "melt",
158 ]
159
160 del pandas
161
[end of modin/pandas/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/modin/pandas/__init__.py b/modin/pandas/__init__.py
--- a/modin/pandas/__init__.py
+++ b/modin/pandas/__init__.py
@@ -58,7 +58,7 @@
read_gbq,
read_table,
)
-from .reshape import get_dummies, melt
+from .reshape import get_dummies, melt, crosstab
from .general import isna, merge, pivot_table
from .. import __execution_engine__ as execution_engine
@@ -155,6 +155,7 @@
"Categorical",
"__version__",
"melt",
+ "crosstab",
]
del pandas
diff --git a/modin/pandas/reshape.py b/modin/pandas/reshape.py
--- a/modin/pandas/reshape.py
+++ b/modin/pandas/reshape.py
@@ -6,6 +6,7 @@
from pandas.core.dtypes.common import is_list_like
from .dataframe import DataFrame
+from modin.error_message import ErrorMessage
def get_dummies(
@@ -78,3 +79,31 @@
value_name=value_name,
col_level=col_level,
)
+
+
+def crosstab(
+ index,
+ columns,
+ values=None,
+ rownames=None,
+ colnames=None,
+ aggfunc=None,
+ margins=False,
+ margins_name="All",
+ dropna=True,
+ normalize=False,
+):
+ ErrorMessage.default_to_pandas()
+ pandas_crosstab = pandas.crosstab(
+ index,
+ columns,
+ values,
+ rownames,
+ colnames,
+ aggfunc,
+ margins,
+ margins_name,
+ dropna,
+ normalize,
+ )
+ return DataFrame(pandas_crosstab)
| {"golden_diff": "diff --git a/modin/pandas/__init__.py b/modin/pandas/__init__.py\n--- a/modin/pandas/__init__.py\n+++ b/modin/pandas/__init__.py\n@@ -58,7 +58,7 @@\n read_gbq,\n read_table,\n )\n-from .reshape import get_dummies, melt\n+from .reshape import get_dummies, melt, crosstab\n from .general import isna, merge, pivot_table\n from .. import __execution_engine__ as execution_engine\n \n@@ -155,6 +155,7 @@\n \"Categorical\",\n \"__version__\",\n \"melt\",\n+ \"crosstab\",\n ]\n \n del pandas\ndiff --git a/modin/pandas/reshape.py b/modin/pandas/reshape.py\n--- a/modin/pandas/reshape.py\n+++ b/modin/pandas/reshape.py\n@@ -6,6 +6,7 @@\n from pandas.core.dtypes.common import is_list_like\n \n from .dataframe import DataFrame\n+from modin.error_message import ErrorMessage\n \n \n def get_dummies(\n@@ -78,3 +79,31 @@\n value_name=value_name,\n col_level=col_level,\n )\n+\n+\n+def crosstab(\n+ index,\n+ columns,\n+ values=None,\n+ rownames=None,\n+ colnames=None,\n+ aggfunc=None,\n+ margins=False,\n+ margins_name=\"All\",\n+ dropna=True,\n+ normalize=False,\n+):\n+ ErrorMessage.default_to_pandas()\n+ pandas_crosstab = pandas.crosstab(\n+ index,\n+ columns,\n+ values,\n+ rownames,\n+ colnames,\n+ aggfunc,\n+ margins,\n+ margins_name,\n+ dropna,\n+ normalize,\n+ )\n+ return DataFrame(pandas_crosstab)\n", "issue": "AttributeError: module 'modin.pandas' has no attribute 'crosstab'\n\r\n### Describe the problem\r\n<!-- Describe the problem clearly here. -->\r\n`crosstab` is not currently in the `modin.pandas` module. We can default to pandas for this.\r\n\r\n### Source code / logs\r\n\r\n```python\r\nimport modin.pandas as pd\r\npd.crosstab(args)\r\n```\r\n<!-- Include any logs or source code that would be helpful to diagnose the problem. If including tracebacks, please include the full traceback. Large logs and files should be attached. Try to provide a reproducible test case that is the bare minimum necessary to generate the problem. -->\r\n\n", "before_files": [{"content": "from __future__ import absolute_import\nfrom __future__ import division\nfrom __future__ import print_function\n\nimport pandas\nfrom pandas.core.dtypes.common import is_list_like\n\nfrom .dataframe import DataFrame\n\n\ndef get_dummies(\n data,\n prefix=None,\n prefix_sep=\"_\",\n dummy_na=False,\n columns=None,\n sparse=False,\n drop_first=False,\n):\n \"\"\"Convert categorical variable into indicator variables.\n\n Args:\n data (array-like, Series, or DataFrame): data to encode.\n prefix (string, [string]): Prefix to apply to each encoded column\n label.\n prefix_sep (string, [string]): Separator between prefix and value.\n dummy_na (bool): Add a column to indicate NaNs.\n columns: Which columns to encode.\n sparse (bool): Not Implemented: If True, returns SparseDataFrame.\n drop_first (bool): Whether to remove the first level of encoded data.\n\n Returns:\n DataFrame or one-hot encoded data.\n \"\"\"\n if sparse:\n raise NotImplementedError(\n \"SparseDataFrame is not implemented. \"\n \"To contribute to Modin, please visit \"\n \"github.com/modin-project/modin.\"\n )\n if not isinstance(data, DataFrame):\n return pandas.get_dummies(\n data,\n prefix=prefix,\n prefix_sep=prefix_sep,\n dummy_na=dummy_na,\n columns=columns,\n sparse=sparse,\n drop_first=drop_first,\n )\n if isinstance(data, DataFrame):\n df = data\n elif is_list_like(data):\n df = DataFrame(data)\n\n new_manager = df._query_compiler.get_dummies(\n columns,\n prefix=prefix,\n prefix_sep=prefix_sep,\n dummy_na=dummy_na,\n drop_first=drop_first,\n )\n return DataFrame(query_compiler=new_manager)\n\n\ndef melt(\n frame,\n id_vars=None,\n value_vars=None,\n var_name=None,\n value_name=\"value\",\n col_level=None,\n):\n return frame.melt(\n id_vars=id_vars,\n value_vars=value_vars,\n var_name=var_name,\n value_name=value_name,\n col_level=col_level,\n )\n", "path": "modin/pandas/reshape.py"}, {"content": "from __future__ import absolute_import\nfrom __future__ import division\nfrom __future__ import print_function\n\n# TODO: In the future `set_option` or similar needs to run on every node\n# in order to keep all pandas instances across nodes consistent\nimport pandas\nfrom pandas import (\n eval,\n unique,\n value_counts,\n cut,\n to_numeric,\n factorize,\n test,\n qcut,\n match,\n Panel,\n date_range,\n period_range,\n Index,\n MultiIndex,\n CategoricalIndex,\n Series,\n bdate_range,\n DatetimeIndex,\n Timedelta,\n Timestamp,\n to_timedelta,\n set_eng_float_format,\n set_option,\n NaT,\n PeriodIndex,\n Categorical,\n)\nimport threading\nimport os\nimport ray\n\nfrom .. import __version__\nfrom .concat import concat\nfrom .dataframe import DataFrame\nfrom .datetimes import to_datetime\nfrom .io import (\n read_csv,\n read_parquet,\n read_json,\n read_html,\n read_clipboard,\n read_excel,\n read_hdf,\n read_feather,\n read_msgpack,\n read_stata,\n read_sas,\n read_pickle,\n read_sql,\n read_gbq,\n read_table,\n)\nfrom .reshape import get_dummies, melt\nfrom .general import isna, merge, pivot_table\nfrom .. import __execution_engine__ as execution_engine\n\n__pandas_version__ = \"0.23.4\"\n\nif pandas.__version__ != __pandas_version__:\n raise ImportError(\n \"The pandas version installed does not match the required pandas \"\n \"version in Modin. Please install pandas {} to use \"\n \"Modin.\".format(__pandas_version__)\n )\n\n# Set this so that Pandas doesn't try to multithread by itself\nos.environ[\"OMP_NUM_THREADS\"] = \"1\"\nnum_cpus = 1\n\nif execution_engine == \"Ray\":\n try:\n if threading.current_thread().name == \"MainThread\":\n ray.init(\n redirect_output=True,\n include_webui=False,\n redirect_worker_output=True,\n ignore_reinit_error=True,\n )\n num_cpus = ray.global_state.cluster_resources()[\"CPU\"]\n except AssertionError:\n pass\nelif execution_engine == \"Dask\":\n from distributed.client import _get_global_client\n\n if threading.current_thread().name == \"MainThread\":\n # initialize the dask client\n client = _get_global_client()\n if client is None:\n from distributed import Client\n\n client = Client()\n num_cpus = sum(client.ncores().values())\nelif execution_engine != \"Python\":\n raise ImportError(\"Unrecognized execution engine: {}.\".format(execution_engine))\n\nDEFAULT_NPARTITIONS = max(4, int(num_cpus))\n\n__all__ = [\n \"DataFrame\",\n \"Series\",\n \"read_csv\",\n \"read_parquet\",\n \"read_json\",\n \"read_html\",\n \"read_clipboard\",\n \"read_excel\",\n \"read_hdf\",\n \"read_feather\",\n \"read_msgpack\",\n \"read_stata\",\n \"read_sas\",\n \"read_pickle\",\n \"read_sql\",\n \"read_gbq\",\n \"read_table\",\n \"concat\",\n \"eval\",\n \"unique\",\n \"value_counts\",\n \"cut\",\n \"to_numeric\",\n \"factorize\",\n \"test\",\n \"qcut\",\n \"match\",\n \"to_datetime\",\n \"get_dummies\",\n \"isna\",\n \"merge\",\n \"pivot_table\",\n \"Panel\",\n \"date_range\",\n \"Index\",\n \"MultiIndex\",\n \"Series\",\n \"bdate_range\",\n \"period_range\",\n \"DatetimeIndex\",\n \"to_timedelta\",\n \"set_eng_float_format\",\n \"set_option\",\n \"CategoricalIndex\",\n \"Timedelta\",\n \"Timestamp\",\n \"NaT\",\n \"PeriodIndex\",\n \"Categorical\",\n \"__version__\",\n \"melt\",\n]\n\ndel pandas\n", "path": "modin/pandas/__init__.py"}]} | 2,556 | 408 |
gh_patches_debug_21887 | rasdani/github-patches | git_diff | conan-io__conan-14795 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
[bug] Session is not reused in ConanRequester
### What is your suggestion?
Hi! :-)
In `ConanRequester:__init__()` a `requests.Session` is created to reuse the connection later (https://github.com/conan-io/conan/blob/develop2/conans/client/rest/conan_requester.py#L80).
Unfortunately in `_call_method` always a new request is created: https://github.com/conan-io/conan/blob/develop2/conans/client/rest/conan_requester.py#L174
Most probably this was not an intentional change from Conan 1 where the `self._http_requester` is used: https://github.com/conan-io/conan/blob/develop/conans/client/rest/conan_requester.py#L140
### Have you read the CONTRIBUTING guide?
- [X] I've read the CONTRIBUTING guide
</issue>
<code>
[start of conans/client/rest/conan_requester.py]
1 import fnmatch
2 import json
3 import logging
4 import os
5 import platform
6
7 import requests
8 import urllib3
9 from jinja2 import Template
10 from requests.adapters import HTTPAdapter
11
12 from conans import __version__ as client_version
13 from conans.errors import ConanException
14
15 # Capture SSL warnings as pointed out here:
16 # https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning
17 # TODO: Fix this security warning
18 from conans.util.files import load
19
20 logging.captureWarnings(True)
21
22
23 DEFAULT_TIMEOUT = (30, 60) # connect, read timeouts
24 INFINITE_TIMEOUT = -1
25
26
27 class URLCredentials:
28 def __init__(self, cache_folder):
29 self._urls = {}
30 if not cache_folder:
31 return
32 creds_path = os.path.join(cache_folder, "source_credentials.json")
33 if not os.path.exists(creds_path):
34 return
35 template = Template(load(creds_path))
36 content = template.render({"platform": platform, "os": os})
37 content = json.loads(content)
38
39 def _get_auth(credentials):
40 result = {}
41 has_auth = False
42 if "token" in credentials:
43 result["token"] = credentials["token"]
44 has_auth = True
45 if "user" in credentials and "password" in credentials:
46 result["user"] = credentials["user"]
47 result["password"] = credentials["password"]
48 has_auth = True
49 if has_auth:
50 return result
51 else:
52 raise ConanException(f"Unknown credentials method for '{credentials['url']}'")
53
54 try:
55 self._urls = {credentials["url"]: _get_auth(credentials)
56 for credentials in content["credentials"]}
57 except KeyError as e:
58 raise ConanException(f"Authentication error, wrong source_credentials.json layout: {e}")
59
60 def add_auth(self, url, kwargs):
61 for u, creds in self._urls.items():
62 if url.startswith(u):
63 token = creds.get("token")
64 if token:
65 kwargs["headers"]["Authorization"] = f"Bearer {token}"
66 user = creds.get("user")
67 password = creds.get("password")
68 if user and password:
69 kwargs["auth"] = (user, password)
70 break
71
72
73 class ConanRequester(object):
74
75 def __init__(self, config, cache_folder=None):
76 # TODO: Make all this lazy, to avoid fully configuring Requester, for every api call
77 # even if it doesn't use it
78 # FIXME: Trick for testing when requests is mocked
79 if hasattr(requests, "Session"):
80 self._http_requester = requests.Session()
81 adapter = HTTPAdapter(max_retries=self._get_retries(config))
82 self._http_requester.mount("http://", adapter)
83 self._http_requester.mount("https://", adapter)
84
85 self._url_creds = URLCredentials(cache_folder)
86 self._timeout = config.get("core.net.http:timeout", default=DEFAULT_TIMEOUT)
87 self._no_proxy_match = config.get("core.net.http:no_proxy_match", check_type=list)
88 self._proxies = config.get("core.net.http:proxies")
89 self._cacert_path = config.get("core.net.http:cacert_path", check_type=str)
90 self._client_certificates = config.get("core.net.http:client_cert")
91 self._clean_system_proxy = config.get("core.net.http:clean_system_proxy", default=False,
92 check_type=bool)
93
94 @staticmethod
95 def _get_retries(config):
96 retry = config.get("core.net.http:max_retries", default=2, check_type=int)
97 if retry == 0:
98 return 0
99 retry_status_code_set = {
100 requests.codes.internal_server_error,
101 requests.codes.bad_gateway,
102 requests.codes.service_unavailable,
103 requests.codes.gateway_timeout,
104 requests.codes.variant_also_negotiates,
105 requests.codes.insufficient_storage,
106 requests.codes.bandwidth_limit_exceeded
107 }
108 return urllib3.Retry(
109 total=retry,
110 backoff_factor=0.05,
111 status_forcelist=retry_status_code_set
112 )
113
114 def _should_skip_proxy(self, url):
115 if self._no_proxy_match:
116 for entry in self._no_proxy_match:
117 if fnmatch.fnmatch(url, entry):
118 return True
119 return False
120
121 def _add_kwargs(self, url, kwargs):
122 # verify is the kwargs that comes from caller, RestAPI, it is defined in
123 # Conan remote "verify_ssl"
124 if kwargs.get("verify", None) is not False: # False means de-activate
125 if self._cacert_path is not None:
126 kwargs["verify"] = self._cacert_path
127 kwargs["cert"] = self._client_certificates
128 if self._proxies:
129 if not self._should_skip_proxy(url):
130 kwargs["proxies"] = self._proxies
131 if self._timeout and self._timeout != INFINITE_TIMEOUT:
132 kwargs["timeout"] = self._timeout
133 if not kwargs.get("headers"):
134 kwargs["headers"] = {}
135
136 self._url_creds.add_auth(url, kwargs)
137
138 # Only set User-Agent if none was provided
139 if not kwargs["headers"].get("User-Agent"):
140 platform_info = "; ".join([
141 " ".join([platform.system(), platform.release()]),
142 "Python "+platform.python_version(),
143 platform.machine()])
144 user_agent = "Conan/%s (%s)" % (client_version, platform_info)
145 kwargs["headers"]["User-Agent"] = user_agent
146
147 return kwargs
148
149 def get(self, url, **kwargs):
150 return self._call_method("get", url, **kwargs)
151
152 def head(self, url, **kwargs):
153 return self._call_method("head", url, **kwargs)
154
155 def put(self, url, **kwargs):
156 return self._call_method("put", url, **kwargs)
157
158 def delete(self, url, **kwargs):
159 return self._call_method("delete", url, **kwargs)
160
161 def post(self, url, **kwargs):
162 return self._call_method("post", url, **kwargs)
163
164 def _call_method(self, method, url, **kwargs):
165 popped = False
166 if self._clean_system_proxy:
167 old_env = dict(os.environ)
168 # Clean the proxies from the environ and use the conan specified proxies
169 for var_name in ("http_proxy", "https_proxy", "ftp_proxy", "all_proxy", "no_proxy"):
170 popped = True if os.environ.pop(var_name, None) else popped
171 popped = True if os.environ.pop(var_name.upper(), None) else popped
172 try:
173 all_kwargs = self._add_kwargs(url, kwargs)
174 tmp = getattr(requests, method)(url, **all_kwargs)
175 return tmp
176 finally:
177 if popped:
178 os.environ.clear()
179 os.environ.update(old_env)
180
[end of conans/client/rest/conan_requester.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/conans/client/rest/conan_requester.py b/conans/client/rest/conan_requester.py
--- a/conans/client/rest/conan_requester.py
+++ b/conans/client/rest/conan_requester.py
@@ -81,6 +81,8 @@
adapter = HTTPAdapter(max_retries=self._get_retries(config))
self._http_requester.mount("http://", adapter)
self._http_requester.mount("https://", adapter)
+ else:
+ self._http_requester = requests
self._url_creds = URLCredentials(cache_folder)
self._timeout = config.get("core.net.http:timeout", default=DEFAULT_TIMEOUT)
@@ -171,7 +173,7 @@
popped = True if os.environ.pop(var_name.upper(), None) else popped
try:
all_kwargs = self._add_kwargs(url, kwargs)
- tmp = getattr(requests, method)(url, **all_kwargs)
+ tmp = getattr(self._http_requester, method)(url, **all_kwargs)
return tmp
finally:
if popped:
| {"golden_diff": "diff --git a/conans/client/rest/conan_requester.py b/conans/client/rest/conan_requester.py\n--- a/conans/client/rest/conan_requester.py\n+++ b/conans/client/rest/conan_requester.py\n@@ -81,6 +81,8 @@\n adapter = HTTPAdapter(max_retries=self._get_retries(config))\n self._http_requester.mount(\"http://\", adapter)\n self._http_requester.mount(\"https://\", adapter)\n+ else:\n+ self._http_requester = requests\n \n self._url_creds = URLCredentials(cache_folder)\n self._timeout = config.get(\"core.net.http:timeout\", default=DEFAULT_TIMEOUT)\n@@ -171,7 +173,7 @@\n popped = True if os.environ.pop(var_name.upper(), None) else popped\n try:\n all_kwargs = self._add_kwargs(url, kwargs)\n- tmp = getattr(requests, method)(url, **all_kwargs)\n+ tmp = getattr(self._http_requester, method)(url, **all_kwargs)\n return tmp\n finally:\n if popped:\n", "issue": "[bug] Session is not reused in ConanRequester\n### What is your suggestion?\n\nHi! :-)\r\n\r\nIn `ConanRequester:__init__()` a `requests.Session` is created to reuse the connection later (https://github.com/conan-io/conan/blob/develop2/conans/client/rest/conan_requester.py#L80).\r\nUnfortunately in `_call_method` always a new request is created: https://github.com/conan-io/conan/blob/develop2/conans/client/rest/conan_requester.py#L174\r\n\r\nMost probably this was not an intentional change from Conan 1 where the `self._http_requester` is used: https://github.com/conan-io/conan/blob/develop/conans/client/rest/conan_requester.py#L140\n\n### Have you read the CONTRIBUTING guide?\n\n- [X] I've read the CONTRIBUTING guide\n", "before_files": [{"content": "import fnmatch\nimport json\nimport logging\nimport os\nimport platform\n\nimport requests\nimport urllib3\nfrom jinja2 import Template\nfrom requests.adapters import HTTPAdapter\n\nfrom conans import __version__ as client_version\nfrom conans.errors import ConanException\n\n# Capture SSL warnings as pointed out here:\n# https://urllib3.readthedocs.org/en/latest/security.html#insecureplatformwarning\n# TODO: Fix this security warning\nfrom conans.util.files import load\n\nlogging.captureWarnings(True)\n\n\nDEFAULT_TIMEOUT = (30, 60) # connect, read timeouts\nINFINITE_TIMEOUT = -1\n\n\nclass URLCredentials:\n def __init__(self, cache_folder):\n self._urls = {}\n if not cache_folder:\n return\n creds_path = os.path.join(cache_folder, \"source_credentials.json\")\n if not os.path.exists(creds_path):\n return\n template = Template(load(creds_path))\n content = template.render({\"platform\": platform, \"os\": os})\n content = json.loads(content)\n\n def _get_auth(credentials):\n result = {}\n has_auth = False\n if \"token\" in credentials:\n result[\"token\"] = credentials[\"token\"]\n has_auth = True\n if \"user\" in credentials and \"password\" in credentials:\n result[\"user\"] = credentials[\"user\"]\n result[\"password\"] = credentials[\"password\"]\n has_auth = True\n if has_auth:\n return result\n else:\n raise ConanException(f\"Unknown credentials method for '{credentials['url']}'\")\n\n try:\n self._urls = {credentials[\"url\"]: _get_auth(credentials)\n for credentials in content[\"credentials\"]}\n except KeyError as e:\n raise ConanException(f\"Authentication error, wrong source_credentials.json layout: {e}\")\n\n def add_auth(self, url, kwargs):\n for u, creds in self._urls.items():\n if url.startswith(u):\n token = creds.get(\"token\")\n if token:\n kwargs[\"headers\"][\"Authorization\"] = f\"Bearer {token}\"\n user = creds.get(\"user\")\n password = creds.get(\"password\")\n if user and password:\n kwargs[\"auth\"] = (user, password)\n break\n\n\nclass ConanRequester(object):\n\n def __init__(self, config, cache_folder=None):\n # TODO: Make all this lazy, to avoid fully configuring Requester, for every api call\n # even if it doesn't use it\n # FIXME: Trick for testing when requests is mocked\n if hasattr(requests, \"Session\"):\n self._http_requester = requests.Session()\n adapter = HTTPAdapter(max_retries=self._get_retries(config))\n self._http_requester.mount(\"http://\", adapter)\n self._http_requester.mount(\"https://\", adapter)\n\n self._url_creds = URLCredentials(cache_folder)\n self._timeout = config.get(\"core.net.http:timeout\", default=DEFAULT_TIMEOUT)\n self._no_proxy_match = config.get(\"core.net.http:no_proxy_match\", check_type=list)\n self._proxies = config.get(\"core.net.http:proxies\")\n self._cacert_path = config.get(\"core.net.http:cacert_path\", check_type=str)\n self._client_certificates = config.get(\"core.net.http:client_cert\")\n self._clean_system_proxy = config.get(\"core.net.http:clean_system_proxy\", default=False,\n check_type=bool)\n\n @staticmethod\n def _get_retries(config):\n retry = config.get(\"core.net.http:max_retries\", default=2, check_type=int)\n if retry == 0:\n return 0\n retry_status_code_set = {\n requests.codes.internal_server_error,\n requests.codes.bad_gateway,\n requests.codes.service_unavailable,\n requests.codes.gateway_timeout,\n requests.codes.variant_also_negotiates,\n requests.codes.insufficient_storage,\n requests.codes.bandwidth_limit_exceeded\n }\n return urllib3.Retry(\n total=retry,\n backoff_factor=0.05,\n status_forcelist=retry_status_code_set\n )\n\n def _should_skip_proxy(self, url):\n if self._no_proxy_match:\n for entry in self._no_proxy_match:\n if fnmatch.fnmatch(url, entry):\n return True\n return False\n\n def _add_kwargs(self, url, kwargs):\n # verify is the kwargs that comes from caller, RestAPI, it is defined in\n # Conan remote \"verify_ssl\"\n if kwargs.get(\"verify\", None) is not False: # False means de-activate\n if self._cacert_path is not None:\n kwargs[\"verify\"] = self._cacert_path\n kwargs[\"cert\"] = self._client_certificates\n if self._proxies:\n if not self._should_skip_proxy(url):\n kwargs[\"proxies\"] = self._proxies\n if self._timeout and self._timeout != INFINITE_TIMEOUT:\n kwargs[\"timeout\"] = self._timeout\n if not kwargs.get(\"headers\"):\n kwargs[\"headers\"] = {}\n\n self._url_creds.add_auth(url, kwargs)\n\n # Only set User-Agent if none was provided\n if not kwargs[\"headers\"].get(\"User-Agent\"):\n platform_info = \"; \".join([\n \" \".join([platform.system(), platform.release()]),\n \"Python \"+platform.python_version(),\n platform.machine()])\n user_agent = \"Conan/%s (%s)\" % (client_version, platform_info)\n kwargs[\"headers\"][\"User-Agent\"] = user_agent\n\n return kwargs\n\n def get(self, url, **kwargs):\n return self._call_method(\"get\", url, **kwargs)\n\n def head(self, url, **kwargs):\n return self._call_method(\"head\", url, **kwargs)\n\n def put(self, url, **kwargs):\n return self._call_method(\"put\", url, **kwargs)\n\n def delete(self, url, **kwargs):\n return self._call_method(\"delete\", url, **kwargs)\n\n def post(self, url, **kwargs):\n return self._call_method(\"post\", url, **kwargs)\n\n def _call_method(self, method, url, **kwargs):\n popped = False\n if self._clean_system_proxy:\n old_env = dict(os.environ)\n # Clean the proxies from the environ and use the conan specified proxies\n for var_name in (\"http_proxy\", \"https_proxy\", \"ftp_proxy\", \"all_proxy\", \"no_proxy\"):\n popped = True if os.environ.pop(var_name, None) else popped\n popped = True if os.environ.pop(var_name.upper(), None) else popped\n try:\n all_kwargs = self._add_kwargs(url, kwargs)\n tmp = getattr(requests, method)(url, **all_kwargs)\n return tmp\n finally:\n if popped:\n os.environ.clear()\n os.environ.update(old_env)\n", "path": "conans/client/rest/conan_requester.py"}]} | 2,645 | 238 |
gh_patches_debug_11938 | rasdani/github-patches | git_diff | inventree__InvenTree-1890 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Can't start inventree server
It seems that error at `https://api.exchangerate.host/latest` blocks server startup.
```
# curl https://api.exchangerate.host/latest
<html>
<head><title>521 Origin Down</title></head>
<body bgcolor="white">
<center><h1>521 Origin Down</h1></center>
<hr><center>cloudflare-nginx</center>
</body>
</html>
```
<details>
```
# inv server
InvenTree Database Configuration
================================
ENGINE: django.db.backends.mysql
NAME: inventree
HOST: localhost
Base currency changed from USD to RUB
Updating exchange rates from https://api.exchangerate.host/latest
Using base currency 'RUB'
InvenTree Database Configuration
================================
ENGINE: django.db.backends.mysql
NAME: inventree
HOST: localhost
Base currency changed from USD to RUB
Updating exchange rates from https://api.exchangerate.host/latest
Using base currency 'RUB'
Watching for file changes with StatReloader
Watching for file changes with StatReloader
Exception in thread django-main-thread:
Traceback (most recent call last):
File "/usr/lib64/python3.6/threading.py", line 916, in _bootstrap_inner
self.run()
File "/usr/lib64/python3.6/threading.py", line 864, in run
self._target(*self._args, **self._kwargs)
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/utils/autoreload.py", line 64, in wrapper
fn(*args, **kwargs)
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/core/management/commands/runserver.py", line 110, in inner_run
autoreload.raise_last_exception()
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/utils/autoreload.py", line 87, in raise_last_exception
raise _exception[1]
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/core/management/__init__.py", line 375, in execute
autoreload.check_errors(django.setup)()
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/utils/autoreload.py", line 64, in wrapper
fn(*args, **kwargs)
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/__init__.py", line 24, in setup
apps.populate(settings.INSTALLED_APPS)
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/apps/registry.py", line 122, in populate
app_config.ready()
File "/var/projects/inventree/inventree/InvenTree/InvenTree/apps.py", line 24, in ready
self.update_exchange_rates()
File "/var/projects/inventree/inventree/InvenTree/InvenTree/apps.py", line 105, in update_exchange_rates
update_exchange_rates()
File "/var/projects/inventree/inventree/InvenTree/InvenTree/tasks.py", line 199, in update_exchange_rates
backend.update_rates(base_currency=base)
File "/var/projects/inventree/inventree/InvenTree/InvenTree/exchange.py", line 29, in update_rates
super().update_rates(base=base_currency, symbols=symbols)
File "/usr/lib64/python3.6/contextlib.py", line 52, in inner
return func(*args, **kwds)
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/djmoney/contrib/exchange/backends/base.py", line 68, in update_rates
for currency, value in self.get_rates(**params).items()
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/djmoney/contrib/exchange/backends/base.py", line 80, in get_rates
response = self.get_response(**params)
File "/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/djmoney/contrib/exchange/backends/base.py", line 48, in get_response
response = urlopen(url, cafile=certifi.where())
File "/usr/lib64/python3.6/urllib/request.py", line 223, in urlopen
return opener.open(url, data, timeout)
File "/usr/lib64/python3.6/urllib/request.py", line 532, in open
response = meth(req, response)
File "/usr/lib64/python3.6/urllib/request.py", line 642, in http_response
'http', request, response, code, msg, hdrs)
File "/usr/lib64/python3.6/urllib/request.py", line 570, in error
return self._call_chain(*args)
File "/usr/lib64/python3.6/urllib/request.py", line 504, in _call_chain
result = func(*args)
File "/usr/lib64/python3.6/urllib/request.py", line 650, in http_error_default
raise HTTPError(req.full_url, code, msg, hdrs, fp)
urllib.error.HTTPError: HTTP Error 521: Origin Down
```
</details>
</issue>
<code>
[start of InvenTree/InvenTree/exchange.py]
1 from common.settings import currency_code_default, currency_codes
2
3 from djmoney.contrib.exchange.backends.base import SimpleExchangeBackend
4
5
6 class InvenTreeExchange(SimpleExchangeBackend):
7 """
8 Backend for automatically updating currency exchange rates.
9
10 Uses the exchangerate.host service API
11 """
12
13 name = "InvenTreeExchange"
14
15 def __init__(self):
16 self.url = "https://api.exchangerate.host/latest"
17
18 super().__init__()
19
20 def get_params(self):
21 # No API key is required
22 return {
23 }
24
25 def update_rates(self, base_currency=currency_code_default()):
26
27 symbols = ','.join(currency_codes())
28
29 super().update_rates(base=base_currency, symbols=symbols)
30
[end of InvenTree/InvenTree/exchange.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/InvenTree/InvenTree/exchange.py b/InvenTree/InvenTree/exchange.py
--- a/InvenTree/InvenTree/exchange.py
+++ b/InvenTree/InvenTree/exchange.py
@@ -1,4 +1,5 @@
from common.settings import currency_code_default, currency_codes
+from urllib.error import HTTPError, URLError
from djmoney.contrib.exchange.backends.base import SimpleExchangeBackend
@@ -26,4 +27,8 @@
symbols = ','.join(currency_codes())
- super().update_rates(base=base_currency, symbols=symbols)
+ try:
+ super().update_rates(base=base_currency, symbols=symbols)
+ # catch connection errors
+ except (HTTPError, URLError):
+ print('Encountered connection error while updating')
| {"golden_diff": "diff --git a/InvenTree/InvenTree/exchange.py b/InvenTree/InvenTree/exchange.py\n--- a/InvenTree/InvenTree/exchange.py\n+++ b/InvenTree/InvenTree/exchange.py\n@@ -1,4 +1,5 @@\n from common.settings import currency_code_default, currency_codes\n+from urllib.error import HTTPError, URLError\n \n from djmoney.contrib.exchange.backends.base import SimpleExchangeBackend\n \n@@ -26,4 +27,8 @@\n \n symbols = ','.join(currency_codes())\n \n- super().update_rates(base=base_currency, symbols=symbols)\n+ try:\n+ super().update_rates(base=base_currency, symbols=symbols)\n+ # catch connection errors\n+ except (HTTPError, URLError):\n+ print('Encountered connection error while updating')\n", "issue": "Can't start inventree server\nIt seems that error at `https://api.exchangerate.host/latest` blocks server startup.\r\n\r\n```\r\n# curl https://api.exchangerate.host/latest\r\n<html>\r\n<head><title>521 Origin Down</title></head>\r\n<body bgcolor=\"white\">\r\n<center><h1>521 Origin Down</h1></center>\r\n<hr><center>cloudflare-nginx</center>\r\n</body>\r\n</html>\r\n```\r\n\r\n<details>\r\n\r\n```\r\n# inv server\r\nInvenTree Database Configuration\r\n================================\r\nENGINE: django.db.backends.mysql\r\nNAME: inventree\r\nHOST: localhost\r\nBase currency changed from USD to RUB\r\nUpdating exchange rates from https://api.exchangerate.host/latest\r\nUsing base currency 'RUB'\r\nInvenTree Database Configuration\r\n================================\r\nENGINE: django.db.backends.mysql\r\nNAME: inventree\r\nHOST: localhost\r\nBase currency changed from USD to RUB\r\nUpdating exchange rates from https://api.exchangerate.host/latest\r\nUsing base currency 'RUB'\r\nWatching for file changes with StatReloader\r\nWatching for file changes with StatReloader\r\nException in thread django-main-thread:\r\nTraceback (most recent call last):\r\n File \"/usr/lib64/python3.6/threading.py\", line 916, in _bootstrap_inner\r\n self.run()\r\n File \"/usr/lib64/python3.6/threading.py\", line 864, in run\r\n self._target(*self._args, **self._kwargs)\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/utils/autoreload.py\", line 64, in wrapper\r\n fn(*args, **kwargs)\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/core/management/commands/runserver.py\", line 110, in inner_run\r\n autoreload.raise_last_exception()\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/utils/autoreload.py\", line 87, in raise_last_exception\r\n raise _exception[1]\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/core/management/__init__.py\", line 375, in execute\r\n autoreload.check_errors(django.setup)()\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/utils/autoreload.py\", line 64, in wrapper\r\n fn(*args, **kwargs)\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/__init__.py\", line 24, in setup\r\n apps.populate(settings.INSTALLED_APPS)\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/django/apps/registry.py\", line 122, in populate\r\n app_config.ready()\r\n File \"/var/projects/inventree/inventree/InvenTree/InvenTree/apps.py\", line 24, in ready\r\n self.update_exchange_rates()\r\n File \"/var/projects/inventree/inventree/InvenTree/InvenTree/apps.py\", line 105, in update_exchange_rates\r\n update_exchange_rates()\r\n File \"/var/projects/inventree/inventree/InvenTree/InvenTree/tasks.py\", line 199, in update_exchange_rates\r\n backend.update_rates(base_currency=base)\r\n File \"/var/projects/inventree/inventree/InvenTree/InvenTree/exchange.py\", line 29, in update_rates\r\n super().update_rates(base=base_currency, symbols=symbols)\r\n File \"/usr/lib64/python3.6/contextlib.py\", line 52, in inner\r\n return func(*args, **kwds)\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/djmoney/contrib/exchange/backends/base.py\", line 68, in update_rates\r\n for currency, value in self.get_rates(**params).items()\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/djmoney/contrib/exchange/backends/base.py\", line 80, in get_rates\r\n response = self.get_response(**params)\r\n File \"/var/projects/inventree/inventree-env/lib64/python3.6/site-packages/djmoney/contrib/exchange/backends/base.py\", line 48, in get_response\r\n response = urlopen(url, cafile=certifi.where())\r\n File \"/usr/lib64/python3.6/urllib/request.py\", line 223, in urlopen\r\n return opener.open(url, data, timeout)\r\n File \"/usr/lib64/python3.6/urllib/request.py\", line 532, in open\r\n response = meth(req, response)\r\n File \"/usr/lib64/python3.6/urllib/request.py\", line 642, in http_response\r\n 'http', request, response, code, msg, hdrs)\r\n File \"/usr/lib64/python3.6/urllib/request.py\", line 570, in error\r\n return self._call_chain(*args)\r\n File \"/usr/lib64/python3.6/urllib/request.py\", line 504, in _call_chain\r\n result = func(*args)\r\n File \"/usr/lib64/python3.6/urllib/request.py\", line 650, in http_error_default\r\n raise HTTPError(req.full_url, code, msg, hdrs, fp)\r\nurllib.error.HTTPError: HTTP Error 521: Origin Down\r\n```\r\n\r\n</details>\n", "before_files": [{"content": "from common.settings import currency_code_default, currency_codes\n\nfrom djmoney.contrib.exchange.backends.base import SimpleExchangeBackend\n\n\nclass InvenTreeExchange(SimpleExchangeBackend):\n \"\"\"\n Backend for automatically updating currency exchange rates.\n\n Uses the exchangerate.host service API\n \"\"\"\n\n name = \"InvenTreeExchange\"\n\n def __init__(self):\n self.url = \"https://api.exchangerate.host/latest\"\n\n super().__init__()\n\n def get_params(self):\n # No API key is required\n return {\n }\n\n def update_rates(self, base_currency=currency_code_default()):\n\n symbols = ','.join(currency_codes())\n\n super().update_rates(base=base_currency, symbols=symbols)\n", "path": "InvenTree/InvenTree/exchange.py"}]} | 1,997 | 185 |
gh_patches_debug_29185 | rasdani/github-patches | git_diff | fossasia__open-event-server-4267 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Implement User Emails
Parent Issue: #4196
Requires #4210 to be merged
- [x] Email verification email - To the user who registered
- [x] A welcome email - After registration. Before email verification. - To the user who registered
- [x] Forgot password reset email - To the user who registered
- [x] Email change notification (#4210) - To both the old email address and the new email address
- [ ] Password change notification - To the user
</issue>
<code>
[start of app/api/auth.py]
1 import base64
2
3 from flask import Blueprint, abort, make_response
4 from flask import request, jsonify
5
6 from app.api.helpers.db import save_to_db
7
8 from app.api.helpers.utilities import get_serializer
9 from app.models.user import User
10
11 auth_routes = Blueprint('auth', __name__, url_prefix='/v1/auth')
12
13
14 @auth_routes.route('/verify-email', methods=['POST'])
15 def verify_email():
16 token = base64.b64decode(request.json['data']['token'])
17 s = get_serializer()
18
19 try:
20 data = s.loads(token)
21 except Exception:
22 return abort(
23 make_response(jsonify(error="Invalid Token"), 400)
24 )
25
26 try:
27 user = User.query.filter_by(email=data[0]).one()
28 except Exception:
29 return abort(
30 make_response(jsonify(error="Invalid Token"), 400)
31 )
32 else:
33 user.is_verified = True
34 save_to_db(user)
35
36 return jsonify({
37 "id": user.id,
38 "email": user.email,
39 "name": user.name if user.get('name') else None
40 })
41
[end of app/api/auth.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/app/api/auth.py b/app/api/auth.py
--- a/app/api/auth.py
+++ b/app/api/auth.py
@@ -1,11 +1,14 @@
import base64
+from flask import request, jsonify, abort, make_response, Blueprint
+from sqlalchemy.orm.exc import NoResultFound
-from flask import Blueprint, abort, make_response
-from flask import request, jsonify
-
+from app import get_settings
from app.api.helpers.db import save_to_db
+from app.api.helpers.files import make_frontend_url
+from app.api.helpers.mail import send_email_with_action
from app.api.helpers.utilities import get_serializer
+from app.models.mail import PASSWORD_RESET
from app.models.user import User
auth_routes = Blueprint('auth', __name__, url_prefix='/v1/auth')
@@ -31,6 +34,38 @@
)
else:
user.is_verified = True
+
+
+@auth_routes.route('/reset-password', methods=['POST'])
+def reset_password_post():
+ email = request.json['data']['email']
+
+ try:
+ user = User.query.filter_by(email=email).one()
+ except NoResultFound:
+ return abort(
+ make_response(jsonify(error="User not found"), 404)
+ )
+ else:
+ link = make_frontend_url('/reset-password', {'token': user.reset_password})
+ send_email_with_action(user, PASSWORD_RESET, app_name=get_settings()['app_name'], link=link)
+
+ return make_response(jsonify(message="Email Sent"), 200)
+
+
+@auth_routes.route('/reset-password', methods=['PATCH'])
+def reset_password_patch():
+ token = request.json['data']['token']
+ password = request.json['data']['password']
+
+ try:
+ user = User.query.filter_by(reset_password=token).one()
+ except NoResultFound:
+ return abort(
+ make_response(jsonify(error="User not found"), 404)
+ )
+ else:
+ user.password = password
save_to_db(user)
return jsonify({
| {"golden_diff": "diff --git a/app/api/auth.py b/app/api/auth.py\n--- a/app/api/auth.py\n+++ b/app/api/auth.py\n@@ -1,11 +1,14 @@\n import base64\n+from flask import request, jsonify, abort, make_response, Blueprint\n+from sqlalchemy.orm.exc import NoResultFound\n \n-from flask import Blueprint, abort, make_response\n-from flask import request, jsonify\n-\n+from app import get_settings\n from app.api.helpers.db import save_to_db\n+from app.api.helpers.files import make_frontend_url\n+from app.api.helpers.mail import send_email_with_action\n \n from app.api.helpers.utilities import get_serializer\n+from app.models.mail import PASSWORD_RESET\n from app.models.user import User\n \n auth_routes = Blueprint('auth', __name__, url_prefix='/v1/auth')\n@@ -31,6 +34,38 @@\n )\n else:\n user.is_verified = True\n+\n+\n+@auth_routes.route('/reset-password', methods=['POST'])\n+def reset_password_post():\n+ email = request.json['data']['email']\n+\n+ try:\n+ user = User.query.filter_by(email=email).one()\n+ except NoResultFound:\n+ return abort(\n+ make_response(jsonify(error=\"User not found\"), 404)\n+ )\n+ else:\n+ link = make_frontend_url('/reset-password', {'token': user.reset_password})\n+ send_email_with_action(user, PASSWORD_RESET, app_name=get_settings()['app_name'], link=link)\n+\n+ return make_response(jsonify(message=\"Email Sent\"), 200)\n+\n+\n+@auth_routes.route('/reset-password', methods=['PATCH'])\n+def reset_password_patch():\n+ token = request.json['data']['token']\n+ password = request.json['data']['password']\n+\n+ try:\n+ user = User.query.filter_by(reset_password=token).one()\n+ except NoResultFound:\n+ return abort(\n+ make_response(jsonify(error=\"User not found\"), 404)\n+ )\n+ else:\n+ user.password = password\n save_to_db(user)\n \n return jsonify({\n", "issue": "Implement User Emails\nParent Issue: #4196 \r\n\r\nRequires #4210 to be merged\r\n\r\n- [x] Email verification email - To the user who registered\r\n- [x] A welcome email - After registration. Before email verification. - To the user who registered\r\n- [x] Forgot password reset email - To the user who registered\r\n- [x] Email change notification (#4210) - To both the old email address and the new email address\r\n- [ ] Password change notification - To the user\n", "before_files": [{"content": "import base64\n\nfrom flask import Blueprint, abort, make_response\nfrom flask import request, jsonify\n\nfrom app.api.helpers.db import save_to_db\n\nfrom app.api.helpers.utilities import get_serializer\nfrom app.models.user import User\n\nauth_routes = Blueprint('auth', __name__, url_prefix='/v1/auth')\n\n\n@auth_routes.route('/verify-email', methods=['POST'])\ndef verify_email():\n token = base64.b64decode(request.json['data']['token'])\n s = get_serializer()\n\n try:\n data = s.loads(token)\n except Exception:\n return abort(\n make_response(jsonify(error=\"Invalid Token\"), 400)\n )\n\n try:\n user = User.query.filter_by(email=data[0]).one()\n except Exception:\n return abort(\n make_response(jsonify(error=\"Invalid Token\"), 400)\n )\n else:\n user.is_verified = True\n save_to_db(user)\n\n return jsonify({\n \"id\": user.id,\n \"email\": user.email,\n \"name\": user.name if user.get('name') else None\n })\n", "path": "app/api/auth.py"}]} | 958 | 458 |
gh_patches_debug_19986 | rasdani/github-patches | git_diff | opsdroid__opsdroid-913 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Matrix connector tries to parse empty messages
Talked about this in opsdroid-general: the matrix connector tries to parse empty messages (like ones sent from the bot itself). We should avoid this by checking that the message is not `None` before parsing. Cadair pointed out that we can do this with `if message:` above L143 in the connector.
https://github.com/opsdroid/opsdroid/blob/11508b513ea563a58fc95581b7032256449c65c1/opsdroid/connector/matrix/connector.py#L143
</issue>
<code>
[start of opsdroid/connector/matrix/connector.py]
1 """Connector for Matrix (https://matrix.org)."""
2
3 import re
4 import logging
5 from concurrent.futures import CancelledError
6
7 import aiohttp
8
9 from matrix_api_async.api_asyncio import AsyncHTTPAPI
10 from matrix_client.errors import MatrixRequestError
11
12 from opsdroid.connector import Connector, register_event
13 from opsdroid.events import Message
14
15 from .html_cleaner import clean
16
17
18 _LOGGER = logging.getLogger(__name__)
19
20 __all__ = ['ConnectorMatrix']
21
22
23 class ConnectorMatrix(Connector):
24 """Connector for Matrix (https://matrix.org)."""
25
26 def __init__(self, config, opsdroid=None): # noqa: D107
27 """Init the config for the connector."""
28 super().__init__(config, opsdroid=opsdroid)
29
30 self.name = "ConnectorMatrix" # The name of your connector
31 self.rooms = config.get('rooms', None)
32 if not self.rooms:
33 self.rooms = {'main': config['room']}
34 self.room_ids = {}
35 self.default_target = self.rooms['main']
36 self.mxid = config['mxid']
37 self.nick = config.get('nick', None)
38 self.homeserver = config.get('homeserver', "https://matrix.org")
39 self.password = config['password']
40 self.room_specific_nicks = config.get("room_specific_nicks", False)
41 self.session = None
42 self.filter_id = None
43 self.connection = None
44
45 @property
46 def filter_json(self):
47 """Define JSON filter to apply to incoming events."""
48 return {
49 "event_format": "client",
50 "account_data": {
51 "limit": 0,
52 "types": []
53 },
54 "presence": {
55 "limit": 0,
56 "types": []
57 },
58 "room": {
59 "rooms": [],
60 "account_data": {
61 "types": []
62 },
63 "timeline": {
64 "types": ["m.room.message"]
65 },
66 "ephemeral": {
67 "types": []
68 },
69 "state": {
70 "types": []
71 }
72 }
73 }
74
75 async def make_filter(self, api, room_ids):
76 """Make a filter on the server for future syncs."""
77 fjson = self.filter_json
78 for room_id in room_ids:
79 fjson['room']['rooms'].append(room_id)
80
81 resp = await api.create_filter(
82 user_id=self.mxid, filter_params=fjson)
83
84 return resp['filter_id']
85
86 async def connect(self):
87 """Create connection object with chat library."""
88 session = aiohttp.ClientSession()
89 mapi = AsyncHTTPAPI(self.homeserver, session)
90
91 self.session = session
92 login_response = await mapi.login(
93 "m.login.password", user=self.mxid, password=self.password)
94 mapi.token = login_response['access_token']
95 mapi.sync_token = None
96
97 for roomname, room in self.rooms.items():
98 response = await mapi.join_room(room)
99 self.room_ids[roomname] = response['room_id']
100 self.connection = mapi
101
102 # Create a filter now, saves time on each later sync
103 self.filter_id = await self.make_filter(mapi, self.room_ids.values())
104
105 # Do initial sync so we don't get old messages later.
106 response = await self.connection.sync(
107 timeout_ms=3000,
108 filter='{ "room": { "timeline" : { "limit" : 1 } } }',
109 set_presence="online")
110 self.connection.sync_token = response["next_batch"]
111
112 if self.nick:
113 display_name = await self.connection.get_display_name(self.mxid)
114 if display_name != self.nick:
115 await self.connection.set_display_name(self.mxid, self.nick)
116
117 async def _parse_sync_response(self, response):
118 self.connection.sync_token = response["next_batch"]
119 for roomid in self.room_ids.values():
120 room = response['rooms']['join'].get(roomid, None)
121 if room and 'timeline' in room:
122 for event in room['timeline']['events']:
123 if event['content']['msgtype'] == 'm.text':
124 if event['sender'] != self.mxid:
125 return Message(
126 event['content']['body'],
127 await self._get_nick(roomid, event['sender']),
128 roomid,
129 self,
130 event_id=event['event_id'],
131 raw_event=event)
132
133 async def listen(self): # pragma: no cover
134 """Listen for new messages from the chat service."""
135 while True: # pylint: disable=R1702
136 try:
137 response = await self.connection.sync(
138 self.connection.sync_token,
139 timeout_ms=int(6 * 60 * 60 * 1e3), # 6h in ms
140 filter=self.filter_id)
141 _LOGGER.debug("matrix sync request returned")
142 message = await self._parse_sync_response(response)
143 await self.opsdroid.parse(message)
144
145 except MatrixRequestError as mre:
146 # We can safely ignore timeout errors. The non-standard error
147 # codes are returned by Cloudflare.
148 if mre.code in [504, 522, 524]:
149 _LOGGER.info('Matrix Sync Timeout (code: %d)', mre.code)
150 continue
151
152 _LOGGER.exception('Matrix Sync Error')
153 except CancelledError:
154 raise
155 except Exception: # pylint: disable=W0703
156 _LOGGER.exception('Matrix Sync Error')
157
158 async def _get_nick(self, roomid, mxid):
159 """
160 Get nickname from user ID.
161
162 Get the nickname of a sender depending on the room specific config
163 setting.
164 """
165 if self.room_specific_nicks:
166 try:
167 return await self.connection.get_room_displayname(roomid, mxid)
168 except Exception: # pylint: disable=W0703
169 # Fallback to the non-room specific one
170 logging.exception(
171 "Failed to lookup room specific nick for %s", mxid)
172
173 try:
174 return await self.connection.get_display_name(mxid)
175 except MatrixRequestError as mre:
176 # Log the error if it's not the 404 from the user not having a nick
177 if mre.code != 404:
178 logging.exception("Failed to lookup nick for %s", mxid)
179 return mxid
180
181 @staticmethod
182 def _get_formatted_message_body(message, body=None, msgtype="m.text"):
183 """
184 Get HTML from a message.
185
186 Return the json representation of the message in
187 "org.matrix.custom.html" format.
188 """
189 # Markdown leaves a <p></p> around standard messages that we want to
190 # strip:
191 if message.startswith('<p>'):
192 message = message[3:]
193 if message.endswith('</p>'):
194 message = message[:-4]
195
196 clean_html = clean(message)
197
198 return {
199 # Strip out any tags from the markdown to make the body
200 "body": body if body else re.sub('<[^<]+?>', '', clean_html),
201 "msgtype": msgtype,
202 "format": "org.matrix.custom.html",
203 "formatted_body": clean_html
204 }
205
206 @register_event(Message)
207 async def send_message(self, message):
208 """Send `message.text` back to the chat service."""
209 if not message.target.startswith(("!", "#")):
210 room_id = self.rooms[message.target]
211 else:
212 room_id = message.target
213
214 # Ensure we have a room id not alias
215 if not room_id.startswith('!'):
216 room_id = await self.connection.get_room_id(room_id)
217 else:
218 room_id = room_id
219
220 try:
221 await self.connection.send_message_event(
222 room_id,
223 "m.room.message",
224 self._get_formatted_message_body(message.text))
225 except aiohttp.client_exceptions.ServerDisconnectedError:
226 _LOGGER.debug("Server had disconnected, retrying send.")
227 await self.connection.send_message_event(
228 room_id,
229 "m.room.message",
230 self._get_formatted_message_body(message.text))
231
232 async def disconnect(self):
233 """Close the matrix session."""
234 await self.session.close()
235
236 def get_roomname(self, room):
237 """Get the name of a room from alias or room ID."""
238 if room.startswith(('#', '!')):
239 for connroom in self.rooms:
240 if room in (connroom, self.room_ids[connroom]):
241 return connroom
242
243 return room
244
[end of opsdroid/connector/matrix/connector.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/opsdroid/connector/matrix/connector.py b/opsdroid/connector/matrix/connector.py
--- a/opsdroid/connector/matrix/connector.py
+++ b/opsdroid/connector/matrix/connector.py
@@ -140,7 +140,8 @@
filter=self.filter_id)
_LOGGER.debug("matrix sync request returned")
message = await self._parse_sync_response(response)
- await self.opsdroid.parse(message)
+ if message:
+ await self.opsdroid.parse(message)
except MatrixRequestError as mre:
# We can safely ignore timeout errors. The non-standard error
@@ -201,7 +202,7 @@
"msgtype": msgtype,
"format": "org.matrix.custom.html",
"formatted_body": clean_html
- }
+ }
@register_event(Message)
async def send_message(self, message):
| {"golden_diff": "diff --git a/opsdroid/connector/matrix/connector.py b/opsdroid/connector/matrix/connector.py\n--- a/opsdroid/connector/matrix/connector.py\n+++ b/opsdroid/connector/matrix/connector.py\n@@ -140,7 +140,8 @@\n filter=self.filter_id)\n _LOGGER.debug(\"matrix sync request returned\")\n message = await self._parse_sync_response(response)\n- await self.opsdroid.parse(message)\n+ if message:\n+ await self.opsdroid.parse(message)\n \n except MatrixRequestError as mre:\n # We can safely ignore timeout errors. The non-standard error\n@@ -201,7 +202,7 @@\n \"msgtype\": msgtype,\n \"format\": \"org.matrix.custom.html\",\n \"formatted_body\": clean_html\n- }\n+ }\n \n @register_event(Message)\n async def send_message(self, message):\n", "issue": "Matrix connector tries to parse empty messages\nTalked about this in opsdroid-general: the matrix connector tries to parse empty messages (like ones sent from the bot itself). We should avoid this by checking that the message is not `None` before parsing. Cadair pointed out that we can do this with `if message:` above L143 in the connector. \r\n\r\nhttps://github.com/opsdroid/opsdroid/blob/11508b513ea563a58fc95581b7032256449c65c1/opsdroid/connector/matrix/connector.py#L143\n", "before_files": [{"content": "\"\"\"Connector for Matrix (https://matrix.org).\"\"\"\n\nimport re\nimport logging\nfrom concurrent.futures import CancelledError\n\nimport aiohttp\n\nfrom matrix_api_async.api_asyncio import AsyncHTTPAPI\nfrom matrix_client.errors import MatrixRequestError\n\nfrom opsdroid.connector import Connector, register_event\nfrom opsdroid.events import Message\n\nfrom .html_cleaner import clean\n\n\n_LOGGER = logging.getLogger(__name__)\n\n__all__ = ['ConnectorMatrix']\n\n\nclass ConnectorMatrix(Connector):\n \"\"\"Connector for Matrix (https://matrix.org).\"\"\"\n\n def __init__(self, config, opsdroid=None): # noqa: D107\n \"\"\"Init the config for the connector.\"\"\"\n super().__init__(config, opsdroid=opsdroid)\n\n self.name = \"ConnectorMatrix\" # The name of your connector\n self.rooms = config.get('rooms', None)\n if not self.rooms:\n self.rooms = {'main': config['room']}\n self.room_ids = {}\n self.default_target = self.rooms['main']\n self.mxid = config['mxid']\n self.nick = config.get('nick', None)\n self.homeserver = config.get('homeserver', \"https://matrix.org\")\n self.password = config['password']\n self.room_specific_nicks = config.get(\"room_specific_nicks\", False)\n self.session = None\n self.filter_id = None\n self.connection = None\n\n @property\n def filter_json(self):\n \"\"\"Define JSON filter to apply to incoming events.\"\"\"\n return {\n \"event_format\": \"client\",\n \"account_data\": {\n \"limit\": 0,\n \"types\": []\n },\n \"presence\": {\n \"limit\": 0,\n \"types\": []\n },\n \"room\": {\n \"rooms\": [],\n \"account_data\": {\n \"types\": []\n },\n \"timeline\": {\n \"types\": [\"m.room.message\"]\n },\n \"ephemeral\": {\n \"types\": []\n },\n \"state\": {\n \"types\": []\n }\n }\n }\n\n async def make_filter(self, api, room_ids):\n \"\"\"Make a filter on the server for future syncs.\"\"\"\n fjson = self.filter_json\n for room_id in room_ids:\n fjson['room']['rooms'].append(room_id)\n\n resp = await api.create_filter(\n user_id=self.mxid, filter_params=fjson)\n\n return resp['filter_id']\n\n async def connect(self):\n \"\"\"Create connection object with chat library.\"\"\"\n session = aiohttp.ClientSession()\n mapi = AsyncHTTPAPI(self.homeserver, session)\n\n self.session = session\n login_response = await mapi.login(\n \"m.login.password\", user=self.mxid, password=self.password)\n mapi.token = login_response['access_token']\n mapi.sync_token = None\n\n for roomname, room in self.rooms.items():\n response = await mapi.join_room(room)\n self.room_ids[roomname] = response['room_id']\n self.connection = mapi\n\n # Create a filter now, saves time on each later sync\n self.filter_id = await self.make_filter(mapi, self.room_ids.values())\n\n # Do initial sync so we don't get old messages later.\n response = await self.connection.sync(\n timeout_ms=3000,\n filter='{ \"room\": { \"timeline\" : { \"limit\" : 1 } } }',\n set_presence=\"online\")\n self.connection.sync_token = response[\"next_batch\"]\n\n if self.nick:\n display_name = await self.connection.get_display_name(self.mxid)\n if display_name != self.nick:\n await self.connection.set_display_name(self.mxid, self.nick)\n\n async def _parse_sync_response(self, response):\n self.connection.sync_token = response[\"next_batch\"]\n for roomid in self.room_ids.values():\n room = response['rooms']['join'].get(roomid, None)\n if room and 'timeline' in room:\n for event in room['timeline']['events']:\n if event['content']['msgtype'] == 'm.text':\n if event['sender'] != self.mxid:\n return Message(\n event['content']['body'],\n await self._get_nick(roomid, event['sender']),\n roomid,\n self,\n event_id=event['event_id'],\n raw_event=event)\n\n async def listen(self): # pragma: no cover\n \"\"\"Listen for new messages from the chat service.\"\"\"\n while True: # pylint: disable=R1702\n try:\n response = await self.connection.sync(\n self.connection.sync_token,\n timeout_ms=int(6 * 60 * 60 * 1e3), # 6h in ms\n filter=self.filter_id)\n _LOGGER.debug(\"matrix sync request returned\")\n message = await self._parse_sync_response(response)\n await self.opsdroid.parse(message)\n\n except MatrixRequestError as mre:\n # We can safely ignore timeout errors. The non-standard error\n # codes are returned by Cloudflare.\n if mre.code in [504, 522, 524]:\n _LOGGER.info('Matrix Sync Timeout (code: %d)', mre.code)\n continue\n\n _LOGGER.exception('Matrix Sync Error')\n except CancelledError:\n raise\n except Exception: # pylint: disable=W0703\n _LOGGER.exception('Matrix Sync Error')\n\n async def _get_nick(self, roomid, mxid):\n \"\"\"\n Get nickname from user ID.\n\n Get the nickname of a sender depending on the room specific config\n setting.\n \"\"\"\n if self.room_specific_nicks:\n try:\n return await self.connection.get_room_displayname(roomid, mxid)\n except Exception: # pylint: disable=W0703\n # Fallback to the non-room specific one\n logging.exception(\n \"Failed to lookup room specific nick for %s\", mxid)\n\n try:\n return await self.connection.get_display_name(mxid)\n except MatrixRequestError as mre:\n # Log the error if it's not the 404 from the user not having a nick\n if mre.code != 404:\n logging.exception(\"Failed to lookup nick for %s\", mxid)\n return mxid\n\n @staticmethod\n def _get_formatted_message_body(message, body=None, msgtype=\"m.text\"):\n \"\"\"\n Get HTML from a message.\n\n Return the json representation of the message in\n \"org.matrix.custom.html\" format.\n \"\"\"\n # Markdown leaves a <p></p> around standard messages that we want to\n # strip:\n if message.startswith('<p>'):\n message = message[3:]\n if message.endswith('</p>'):\n message = message[:-4]\n\n clean_html = clean(message)\n\n return {\n # Strip out any tags from the markdown to make the body\n \"body\": body if body else re.sub('<[^<]+?>', '', clean_html),\n \"msgtype\": msgtype,\n \"format\": \"org.matrix.custom.html\",\n \"formatted_body\": clean_html\n }\n\n @register_event(Message)\n async def send_message(self, message):\n \"\"\"Send `message.text` back to the chat service.\"\"\"\n if not message.target.startswith((\"!\", \"#\")):\n room_id = self.rooms[message.target]\n else:\n room_id = message.target\n\n # Ensure we have a room id not alias\n if not room_id.startswith('!'):\n room_id = await self.connection.get_room_id(room_id)\n else:\n room_id = room_id\n\n try:\n await self.connection.send_message_event(\n room_id,\n \"m.room.message\",\n self._get_formatted_message_body(message.text))\n except aiohttp.client_exceptions.ServerDisconnectedError:\n _LOGGER.debug(\"Server had disconnected, retrying send.\")\n await self.connection.send_message_event(\n room_id,\n \"m.room.message\",\n self._get_formatted_message_body(message.text))\n\n async def disconnect(self):\n \"\"\"Close the matrix session.\"\"\"\n await self.session.close()\n\n def get_roomname(self, room):\n \"\"\"Get the name of a room from alias or room ID.\"\"\"\n if room.startswith(('#', '!')):\n for connroom in self.rooms:\n if room in (connroom, self.room_ids[connroom]):\n return connroom\n\n return room\n", "path": "opsdroid/connector/matrix/connector.py"}]} | 3,149 | 208 |
gh_patches_debug_16278 | rasdani/github-patches | git_diff | deis__deis-422 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Delete EC2 formation leaves garbage at EC2
You can sucessufully delete a EC2 formation, but later you have no way to create another with the same ID, as there will still exist a Security Group and Key Pair with same name on EC2
</issue>
<code>
[start of provider/ec2.py]
1 """
2 Deis cloud provider implementation for Amazon EC2.
3 """
4
5 from __future__ import unicode_literals
6
7 import json
8 import time
9
10 from boto import ec2
11 from boto.exception import EC2ResponseError
12
13 # from api.ssh import connect_ssh, exec_ssh
14 from deis import settings
15
16
17 # Deis-optimized EC2 amis -- with 3.8 kernel, chef 11 deps,
18 # and large docker images (e.g. buildstep) pre-installed
19 IMAGE_MAP = {
20 'ap-northeast-1': 'ami-6399f962',
21 'ap-southeast-1': 'ami-0a87d358',
22 'ap-southeast-2': 'ami-c3bd22f9',
23 'eu-west-1': 'ami-4826c83f',
24 'sa-east-1': 'ami-79bf1e64',
25 'us-east-1': 'ami-e7af828e',
26 'us-west-1': 'ami-a06e5ee5',
27 'us-west-2': 'ami-28abce18',
28 }
29
30
31 def seed_flavors():
32 """Seed the database with default flavors for each EC2 region.
33
34 :rtype: list of dicts containing flavor data
35 """
36 flavors = []
37 for r in ('us-east-1', 'us-west-1', 'us-west-2', 'eu-west-1',
38 'ap-northeast-1', 'ap-southeast-1', 'ap-southeast-2',
39 'sa-east-1'):
40 flavors.append({'id': 'ec2-{}'.format(r),
41 'provider': 'ec2',
42 'params': json.dumps({
43 'region': r,
44 'image': IMAGE_MAP[r],
45 'zone': 'any',
46 'size': 'm1.medium'})})
47 return flavors
48
49
50 def build_layer(layer):
51 """
52 Build a layer.
53
54 :param layer: a dict containing formation, id, params, and creds info
55 """
56 region = layer['params'].get('region', 'us-east-1')
57 conn = _create_ec2_connection(layer['creds'], region)
58 # create a new sg and authorize all ports
59 # use iptables on the host to firewall ports
60 name = "{formation}-{id}".format(**layer)
61 sg = conn.create_security_group(name, 'Created by Deis')
62 # import a new keypair using the layer key material
63 conn.import_key_pair(name, layer['ssh_public_key'])
64 # loop until the sg is *actually* there
65 for i in xrange(10):
66 try:
67 sg.authorize(ip_protocol='tcp', from_port=1, to_port=65535,
68 cidr_ip='0.0.0.0/0')
69 break
70 except EC2ResponseError:
71 if i < 10:
72 time.sleep(1.5)
73 continue
74 else:
75 raise RuntimeError('Failed to authorize security group')
76
77
78 def destroy_layer(layer):
79 """
80 Destroy a layer.
81
82 :param layer: a dict containing formation, id, params, and creds info
83 """
84 region = layer['params'].get('region', 'us-east-1')
85 name = "{formation}-{id}".format(**layer)
86 conn = _create_ec2_connection(layer['creds'], region)
87 conn.delete_key_pair(name)
88 # there's an ec2 race condition on instances terminating
89 # successfully but still holding a lock on the security group
90 # let's take a nap
91 time.sleep(5)
92 try:
93 conn.delete_security_group(name)
94 except EC2ResponseError as e:
95 if e.code != 'InvalidGroup.NotFound':
96 raise e
97
98
99 def build_node(node):
100 """
101 Build a node.
102
103 :param node: a dict containing formation, layer, params, and creds info.
104 :rtype: a tuple of (provider_id, fully_qualified_domain_name, metadata)
105 """
106 params, creds = node['params'], node['creds']
107 region = params.setdefault('region', 'us-east-1')
108 conn = _create_ec2_connection(creds, region)
109 name = "{formation}-{layer}".format(**node)
110 params['key_name'] = name
111 sg = conn.get_all_security_groups(name)[0]
112 params.setdefault('security_groups', []).append(sg.name)
113 image_id = params.get(
114 'image', getattr(settings, 'IMAGE_MAP', IMAGE_MAP)[region])
115 images = conn.get_all_images([image_id])
116 if len(images) != 1:
117 raise LookupError('Could not find AMI: %s' % image_id)
118 image = images[0]
119 kwargs = _prepare_run_kwargs(params)
120 reservation = image.run(**kwargs)
121 instances = reservation.instances
122 boto = instances[0]
123 # sleep before tagging
124 time.sleep(10)
125 boto.update()
126 boto.add_tag('Name', node['id'])
127 # loop until running
128 while(True):
129 time.sleep(2)
130 boto.update()
131 if boto.state == 'running':
132 break
133 # prepare return values
134 provider_id = boto.id
135 fqdn = boto.public_dns_name
136 metadata = _format_metadata(boto)
137 return provider_id, fqdn, metadata
138
139
140 def destroy_node(node):
141 """
142 Destroy a node.
143
144 :param node: a dict containing a node's provider_id, params, and creds
145 """
146 provider_id = node['provider_id']
147 region = node['params'].get('region', 'us-east-1')
148 conn = _create_ec2_connection(node['creds'], region)
149 if provider_id:
150 try:
151 conn.terminate_instances([provider_id])
152 i = conn.get_all_instances([provider_id])[0].instances[0]
153 while(True):
154 time.sleep(2)
155 i.update()
156 if i.state == "terminated":
157 break
158 except EC2ResponseError as e:
159 if e.code not in ('InvalidInstanceID.NotFound',):
160 raise
161
162
163 def _create_ec2_connection(creds, region):
164 """
165 Connect to an EC2 region with the given credentials.
166
167 :param creds: a dict containing an EC2 access_key and secret_key
168 :region: the name of an EC2 region, such as "us-west-2"
169 :rtype: a connected :class:`~boto.ec2.connection.EC2Connection`
170 :raises EnvironmentError: if no credentials are provided
171 """
172 if not creds:
173 raise EnvironmentError('No credentials provided')
174 return ec2.connect_to_region(region,
175 aws_access_key_id=creds['access_key'],
176 aws_secret_access_key=creds['secret_key'])
177
178
179 def _prepare_run_kwargs(params):
180 # start with sane defaults
181 kwargs = {
182 'min_count': 1, 'max_count': 1,
183 'user_data': None, 'addressing_type': None,
184 'instance_type': None, 'placement': None,
185 'kernel_id': None, 'ramdisk_id': None,
186 'monitoring_enabled': False, 'subnet_id': None,
187 'block_device_map': None,
188 }
189 # convert zone "any" to NoneType
190 requested_zone = params.get('zone')
191 if requested_zone and requested_zone.lower() == 'any':
192 requested_zone = None
193 # lookup kwargs from params
194 param_kwargs = {
195 'instance_type': params.get('size', 'm1.medium'),
196 'security_groups': params['security_groups'],
197 'placement': requested_zone,
198 'key_name': params['key_name'],
199 'kernel_id': params.get('kernel', None),
200 }
201 # add user_data if provided in params
202 user_data = params.get('user_data')
203 if user_data:
204 kwargs.update({'user_data': user_data})
205 # params override defaults
206 kwargs.update(param_kwargs)
207 return kwargs
208
209
210 def _format_metadata(boto):
211 return {
212 'architecture': boto.architecture,
213 'block_device_mapping': {
214 k: v.volume_id for k, v in boto.block_device_mapping.items()
215 },
216 'client_token': boto.client_token,
217 'dns_name': boto.dns_name,
218 'ebs_optimized': boto.ebs_optimized,
219 'eventsSet': boto.eventsSet,
220 'group_name': boto.group_name,
221 'groups': [g.id for g in boto.groups],
222 'hypervisor': boto.hypervisor,
223 'id': boto.id,
224 'image_id': boto.image_id,
225 'instance_profile': boto.instance_profile,
226 'instance_type': boto.instance_type,
227 'interfaces': list(boto.interfaces),
228 'ip_address': boto.ip_address,
229 'kernel': boto.kernel,
230 'key_name': boto.key_name,
231 'launch_time': boto.launch_time,
232 'monitored': boto.monitored,
233 'monitoring_state': boto.monitoring_state,
234 'persistent': boto.persistent,
235 'placement': boto.placement,
236 'placement_group': boto.placement_group,
237 'placement_tenancy': boto.placement_tenancy,
238 'previous_state': boto.previous_state,
239 'private_dns_name': boto.private_dns_name,
240 'private_ip_address': boto.private_ip_address,
241 'public_dns_name': boto.public_dns_name,
242 'ramdisk': boto.ramdisk,
243 'region': boto.region.name,
244 'root_device_name': boto.root_device_name,
245 'root_device_type': boto.root_device_type,
246 'spot_instance_request_id': boto.spot_instance_request_id,
247 'state': boto.state,
248 'state_code': boto.state_code,
249 'state_reason': boto.state_reason,
250 'subnet_id': boto.subnet_id,
251 'tags': dict(boto.tags),
252 'virtualization_type': boto.virtualization_type,
253 'vpc_id': boto.vpc_id,
254 }
255
[end of provider/ec2.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/provider/ec2.py b/provider/ec2.py
--- a/provider/ec2.py
+++ b/provider/ec2.py
@@ -87,13 +87,20 @@
conn.delete_key_pair(name)
# there's an ec2 race condition on instances terminating
# successfully but still holding a lock on the security group
- # let's take a nap
- time.sleep(5)
- try:
- conn.delete_security_group(name)
- except EC2ResponseError as e:
- if e.code != 'InvalidGroup.NotFound':
- raise e
+ for i in range(5):
+ # let's take a nap
+ time.sleep(i ** 1.25) # 1, 2.4, 3.9, 5.6, 7.4
+ try:
+ conn.delete_security_group(name)
+ return
+ except EC2ResponseError as err:
+ if err.code == 'InvalidGroup.NotFound':
+ return
+ elif err.code in ('InvalidGroup.InUse',
+ 'DependencyViolation') and i < 4:
+ continue # retry
+ else:
+ raise
def build_node(node):
| {"golden_diff": "diff --git a/provider/ec2.py b/provider/ec2.py\n--- a/provider/ec2.py\n+++ b/provider/ec2.py\n@@ -87,13 +87,20 @@\n conn.delete_key_pair(name)\n # there's an ec2 race condition on instances terminating\n # successfully but still holding a lock on the security group\n- # let's take a nap\n- time.sleep(5)\n- try:\n- conn.delete_security_group(name)\n- except EC2ResponseError as e:\n- if e.code != 'InvalidGroup.NotFound':\n- raise e\n+ for i in range(5):\n+ # let's take a nap\n+ time.sleep(i ** 1.25) # 1, 2.4, 3.9, 5.6, 7.4\n+ try:\n+ conn.delete_security_group(name)\n+ return\n+ except EC2ResponseError as err:\n+ if err.code == 'InvalidGroup.NotFound':\n+ return\n+ elif err.code in ('InvalidGroup.InUse',\n+ 'DependencyViolation') and i < 4:\n+ continue # retry\n+ else:\n+ raise\n \n \n def build_node(node):\n", "issue": "Delete EC2 formation leaves garbage at EC2\nYou can sucessufully delete a EC2 formation, but later you have no way to create another with the same ID, as there will still exist a Security Group and Key Pair with same name on EC2\n\n", "before_files": [{"content": "\"\"\"\nDeis cloud provider implementation for Amazon EC2.\n\"\"\"\n\nfrom __future__ import unicode_literals\n\nimport json\nimport time\n\nfrom boto import ec2\nfrom boto.exception import EC2ResponseError\n\n# from api.ssh import connect_ssh, exec_ssh\nfrom deis import settings\n\n\n# Deis-optimized EC2 amis -- with 3.8 kernel, chef 11 deps,\n# and large docker images (e.g. buildstep) pre-installed\nIMAGE_MAP = {\n 'ap-northeast-1': 'ami-6399f962',\n 'ap-southeast-1': 'ami-0a87d358',\n 'ap-southeast-2': 'ami-c3bd22f9',\n 'eu-west-1': 'ami-4826c83f',\n 'sa-east-1': 'ami-79bf1e64',\n 'us-east-1': 'ami-e7af828e',\n 'us-west-1': 'ami-a06e5ee5',\n 'us-west-2': 'ami-28abce18',\n}\n\n\ndef seed_flavors():\n \"\"\"Seed the database with default flavors for each EC2 region.\n\n :rtype: list of dicts containing flavor data\n \"\"\"\n flavors = []\n for r in ('us-east-1', 'us-west-1', 'us-west-2', 'eu-west-1',\n 'ap-northeast-1', 'ap-southeast-1', 'ap-southeast-2',\n 'sa-east-1'):\n flavors.append({'id': 'ec2-{}'.format(r),\n 'provider': 'ec2',\n 'params': json.dumps({\n 'region': r,\n 'image': IMAGE_MAP[r],\n 'zone': 'any',\n 'size': 'm1.medium'})})\n return flavors\n\n\ndef build_layer(layer):\n \"\"\"\n Build a layer.\n\n :param layer: a dict containing formation, id, params, and creds info\n \"\"\"\n region = layer['params'].get('region', 'us-east-1')\n conn = _create_ec2_connection(layer['creds'], region)\n # create a new sg and authorize all ports\n # use iptables on the host to firewall ports\n name = \"{formation}-{id}\".format(**layer)\n sg = conn.create_security_group(name, 'Created by Deis')\n # import a new keypair using the layer key material\n conn.import_key_pair(name, layer['ssh_public_key'])\n # loop until the sg is *actually* there\n for i in xrange(10):\n try:\n sg.authorize(ip_protocol='tcp', from_port=1, to_port=65535,\n cidr_ip='0.0.0.0/0')\n break\n except EC2ResponseError:\n if i < 10:\n time.sleep(1.5)\n continue\n else:\n raise RuntimeError('Failed to authorize security group')\n\n\ndef destroy_layer(layer):\n \"\"\"\n Destroy a layer.\n\n :param layer: a dict containing formation, id, params, and creds info\n \"\"\"\n region = layer['params'].get('region', 'us-east-1')\n name = \"{formation}-{id}\".format(**layer)\n conn = _create_ec2_connection(layer['creds'], region)\n conn.delete_key_pair(name)\n # there's an ec2 race condition on instances terminating\n # successfully but still holding a lock on the security group\n # let's take a nap\n time.sleep(5)\n try:\n conn.delete_security_group(name)\n except EC2ResponseError as e:\n if e.code != 'InvalidGroup.NotFound':\n raise e\n\n\ndef build_node(node):\n \"\"\"\n Build a node.\n\n :param node: a dict containing formation, layer, params, and creds info.\n :rtype: a tuple of (provider_id, fully_qualified_domain_name, metadata)\n \"\"\"\n params, creds = node['params'], node['creds']\n region = params.setdefault('region', 'us-east-1')\n conn = _create_ec2_connection(creds, region)\n name = \"{formation}-{layer}\".format(**node)\n params['key_name'] = name\n sg = conn.get_all_security_groups(name)[0]\n params.setdefault('security_groups', []).append(sg.name)\n image_id = params.get(\n 'image', getattr(settings, 'IMAGE_MAP', IMAGE_MAP)[region])\n images = conn.get_all_images([image_id])\n if len(images) != 1:\n raise LookupError('Could not find AMI: %s' % image_id)\n image = images[0]\n kwargs = _prepare_run_kwargs(params)\n reservation = image.run(**kwargs)\n instances = reservation.instances\n boto = instances[0]\n # sleep before tagging\n time.sleep(10)\n boto.update()\n boto.add_tag('Name', node['id'])\n # loop until running\n while(True):\n time.sleep(2)\n boto.update()\n if boto.state == 'running':\n break\n # prepare return values\n provider_id = boto.id\n fqdn = boto.public_dns_name\n metadata = _format_metadata(boto)\n return provider_id, fqdn, metadata\n\n\ndef destroy_node(node):\n \"\"\"\n Destroy a node.\n\n :param node: a dict containing a node's provider_id, params, and creds\n \"\"\"\n provider_id = node['provider_id']\n region = node['params'].get('region', 'us-east-1')\n conn = _create_ec2_connection(node['creds'], region)\n if provider_id:\n try:\n conn.terminate_instances([provider_id])\n i = conn.get_all_instances([provider_id])[0].instances[0]\n while(True):\n time.sleep(2)\n i.update()\n if i.state == \"terminated\":\n break\n except EC2ResponseError as e:\n if e.code not in ('InvalidInstanceID.NotFound',):\n raise\n\n\ndef _create_ec2_connection(creds, region):\n \"\"\"\n Connect to an EC2 region with the given credentials.\n\n :param creds: a dict containing an EC2 access_key and secret_key\n :region: the name of an EC2 region, such as \"us-west-2\"\n :rtype: a connected :class:`~boto.ec2.connection.EC2Connection`\n :raises EnvironmentError: if no credentials are provided\n \"\"\"\n if not creds:\n raise EnvironmentError('No credentials provided')\n return ec2.connect_to_region(region,\n aws_access_key_id=creds['access_key'],\n aws_secret_access_key=creds['secret_key'])\n\n\ndef _prepare_run_kwargs(params):\n # start with sane defaults\n kwargs = {\n 'min_count': 1, 'max_count': 1,\n 'user_data': None, 'addressing_type': None,\n 'instance_type': None, 'placement': None,\n 'kernel_id': None, 'ramdisk_id': None,\n 'monitoring_enabled': False, 'subnet_id': None,\n 'block_device_map': None,\n }\n # convert zone \"any\" to NoneType\n requested_zone = params.get('zone')\n if requested_zone and requested_zone.lower() == 'any':\n requested_zone = None\n # lookup kwargs from params\n param_kwargs = {\n 'instance_type': params.get('size', 'm1.medium'),\n 'security_groups': params['security_groups'],\n 'placement': requested_zone,\n 'key_name': params['key_name'],\n 'kernel_id': params.get('kernel', None),\n }\n # add user_data if provided in params\n user_data = params.get('user_data')\n if user_data:\n kwargs.update({'user_data': user_data})\n # params override defaults\n kwargs.update(param_kwargs)\n return kwargs\n\n\ndef _format_metadata(boto):\n return {\n 'architecture': boto.architecture,\n 'block_device_mapping': {\n k: v.volume_id for k, v in boto.block_device_mapping.items()\n },\n 'client_token': boto.client_token,\n 'dns_name': boto.dns_name,\n 'ebs_optimized': boto.ebs_optimized,\n 'eventsSet': boto.eventsSet,\n 'group_name': boto.group_name,\n 'groups': [g.id for g in boto.groups],\n 'hypervisor': boto.hypervisor,\n 'id': boto.id,\n 'image_id': boto.image_id,\n 'instance_profile': boto.instance_profile,\n 'instance_type': boto.instance_type,\n 'interfaces': list(boto.interfaces),\n 'ip_address': boto.ip_address,\n 'kernel': boto.kernel,\n 'key_name': boto.key_name,\n 'launch_time': boto.launch_time,\n 'monitored': boto.monitored,\n 'monitoring_state': boto.monitoring_state,\n 'persistent': boto.persistent,\n 'placement': boto.placement,\n 'placement_group': boto.placement_group,\n 'placement_tenancy': boto.placement_tenancy,\n 'previous_state': boto.previous_state,\n 'private_dns_name': boto.private_dns_name,\n 'private_ip_address': boto.private_ip_address,\n 'public_dns_name': boto.public_dns_name,\n 'ramdisk': boto.ramdisk,\n 'region': boto.region.name,\n 'root_device_name': boto.root_device_name,\n 'root_device_type': boto.root_device_type,\n 'spot_instance_request_id': boto.spot_instance_request_id,\n 'state': boto.state,\n 'state_code': boto.state_code,\n 'state_reason': boto.state_reason,\n 'subnet_id': boto.subnet_id,\n 'tags': dict(boto.tags),\n 'virtualization_type': boto.virtualization_type,\n 'vpc_id': boto.vpc_id,\n }\n", "path": "provider/ec2.py"}]} | 3,381 | 270 |
gh_patches_debug_11828 | rasdani/github-patches | git_diff | pypi__warehouse-2524 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Validate username format before attempting to flush it to the db
Validate a valid username prior to trying to save it to the database, using the same logic as is already in the database.
---
https://sentry.io/python-software-foundation/warehouse-production/issues/258353802/
```
IntegrityError: new row for relation "accounts_user" violates check constraint "accounts_user_valid_username"
File "sqlalchemy/engine/base.py", line 1182, in _execute_context
context)
File "sqlalchemy/engine/default.py", line 470, in do_execute
cursor.execute(statement, parameters)
IntegrityError: (psycopg2.IntegrityError) new row for relation "accounts_user" violates check constraint "accounts_user_valid_username"
(30 additional frame(s) were not displayed)
...
File "warehouse/raven.py", line 41, in raven_tween
return handler(request)
File "warehouse/cache/http.py", line 69, in conditional_http_tween
response = handler(request)
File "warehouse/cache/http.py", line 33, in wrapped
return view(context, request)
File "warehouse/accounts/views.py", line 226, in register
form.email.data
File "warehouse/accounts/services.py", line 152, in create_user
self.db.flush()
IntegrityError: (psycopg2.IntegrityError) new row for relation "accounts_user" violates check constraint "accounts_user_valid_username"
DETAIL: Failing row contains
```
</issue>
<code>
[start of warehouse/accounts/forms.py]
1 # Licensed under the Apache License, Version 2.0 (the "License");
2 # you may not use this file except in compliance with the License.
3 # You may obtain a copy of the License at
4 #
5 # http://www.apache.org/licenses/LICENSE-2.0
6 #
7 # Unless required by applicable law or agreed to in writing, software
8 # distributed under the License is distributed on an "AS IS" BASIS,
9 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
10 # See the License for the specific language governing permissions and
11 # limitations under the License.
12
13 import disposable_email_domains
14 import wtforms
15 import wtforms.fields.html5
16
17 from warehouse import forms, recaptcha
18 from warehouse.accounts.interfaces import TooManyFailedLogins
19
20
21 class CredentialsMixin:
22 username = wtforms.StringField(
23 validators=[
24 wtforms.validators.DataRequired(),
25 wtforms.validators.Length(
26 max=50,
27 message=(
28 "The username you have chosen is too long. Please choose "
29 "a username with under 50 characters."
30 )
31 ),
32 ],
33 )
34
35 password = wtforms.PasswordField(
36 validators=[
37 wtforms.validators.DataRequired(),
38 ],
39 )
40
41 def __init__(self, *args, user_service, **kwargs):
42 super().__init__(*args, **kwargs)
43 self.user_service = user_service
44
45
46 class RegistrationForm(CredentialsMixin, forms.Form):
47 password = wtforms.PasswordField(
48 validators=[
49 wtforms.validators.DataRequired(),
50 forms.PasswordStrengthValidator(
51 user_input_fields=["full_name", "username", "email"],
52 ),
53 ],
54 )
55 password_confirm = wtforms.PasswordField(
56 validators=[
57 wtforms.validators.DataRequired(),
58 wtforms.validators.EqualTo(
59 "password", "Your passwords do not match. Please try again."
60 ),
61 ],
62 )
63
64 full_name = wtforms.StringField()
65
66 email = wtforms.fields.html5.EmailField(
67 validators=[
68 wtforms.validators.DataRequired(),
69 wtforms.validators.Email(
70 message=(
71 "The email address you have chosen is not a valid "
72 "format. Please try again."
73 )
74 ),
75 ],
76 )
77
78 g_recaptcha_response = wtforms.StringField()
79
80 def __init__(self, *args, recaptcha_service, **kwargs):
81 super().__init__(*args, **kwargs)
82 self.recaptcha_service = recaptcha_service
83
84 def validate_username(self, field):
85 if self.user_service.find_userid(field.data) is not None:
86 raise wtforms.validators.ValidationError(
87 "This username is already being used by another "
88 "account. Please choose a different username."
89 )
90
91 def validate_email(self, field):
92 if self.user_service.find_userid_by_email(field.data) is not None:
93 raise wtforms.validators.ValidationError(
94 "This email address is already being used by another account. "
95 "Please use a different email."
96 )
97 domain = field.data.split('@')[-1]
98 if domain in disposable_email_domains.blacklist:
99 raise wtforms.validators.ValidationError(
100 "Sorry, you cannot create an account with an email address "
101 "from this domain. Please use a different email."
102 )
103
104 def validate_g_recaptcha_response(self, field):
105 # do required data validation here due to enabled flag being required
106 if self.recaptcha_service.enabled and not field.data:
107 raise wtforms.validators.ValidationError("Recaptcha error.")
108 try:
109 self.recaptcha_service.verify_response(field.data)
110 except recaptcha.RecaptchaError:
111 # TODO: log error
112 # don't want to provide the user with any detail
113 raise wtforms.validators.ValidationError("Recaptcha error.")
114
115
116 class LoginForm(CredentialsMixin, forms.Form):
117 def validate_username(self, field):
118 userid = self.user_service.find_userid(field.data)
119
120 if userid is None:
121 raise wtforms.validators.ValidationError(
122 "No user found with that username. Please try again."
123 )
124
125 def validate_password(self, field):
126 userid = self.user_service.find_userid(self.username.data)
127 if userid is not None:
128 try:
129 if not self.user_service.check_password(userid, field.data):
130 raise wtforms.validators.ValidationError(
131 "The username and password combination you have "
132 "provided is invalid. Please try again."
133 )
134 except TooManyFailedLogins:
135 raise wtforms.validators.ValidationError(
136 "There have been too many unsuccessful login attempts, "
137 "please try again later."
138 ) from None
139
[end of warehouse/accounts/forms.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/warehouse/accounts/forms.py b/warehouse/accounts/forms.py
--- a/warehouse/accounts/forms.py
+++ b/warehouse/accounts/forms.py
@@ -29,6 +29,18 @@
"a username with under 50 characters."
)
),
+ # the regexp below must match the CheckConstraint
+ # for the username field in accounts.models.User
+ wtforms.validators.Regexp(
+ r'^[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]$',
+ message=(
+ "The username is invalid. Usernames "
+ "must be composed of letters, numbers, "
+ "dots, hyphens and underscores. And must "
+ "also start and finish with a letter or number. "
+ "Please choose a different username."
+ )
+ )
],
)
| {"golden_diff": "diff --git a/warehouse/accounts/forms.py b/warehouse/accounts/forms.py\n--- a/warehouse/accounts/forms.py\n+++ b/warehouse/accounts/forms.py\n@@ -29,6 +29,18 @@\n \"a username with under 50 characters.\"\n )\n ),\n+ # the regexp below must match the CheckConstraint\n+ # for the username field in accounts.models.User\n+ wtforms.validators.Regexp(\n+ r'^[a-zA-Z0-9][a-zA-Z0-9._-]*[a-zA-Z0-9]$',\n+ message=(\n+ \"The username is invalid. Usernames \"\n+ \"must be composed of letters, numbers, \"\n+ \"dots, hyphens and underscores. And must \"\n+ \"also start and finish with a letter or number. \"\n+ \"Please choose a different username.\"\n+ )\n+ )\n ],\n )\n", "issue": "Validate username format before attempting to flush it to the db\nValidate a valid username prior to trying to save it to the database, using the same logic as is already in the database.\n\n---\n\nhttps://sentry.io/python-software-foundation/warehouse-production/issues/258353802/\n\n```\nIntegrityError: new row for relation \"accounts_user\" violates check constraint \"accounts_user_valid_username\"\n\n File \"sqlalchemy/engine/base.py\", line 1182, in _execute_context\n context)\n File \"sqlalchemy/engine/default.py\", line 470, in do_execute\n cursor.execute(statement, parameters)\n\nIntegrityError: (psycopg2.IntegrityError) new row for relation \"accounts_user\" violates check constraint \"accounts_user_valid_username\"\n(30 additional frame(s) were not displayed)\n...\n File \"warehouse/raven.py\", line 41, in raven_tween\n return handler(request)\n File \"warehouse/cache/http.py\", line 69, in conditional_http_tween\n response = handler(request)\n File \"warehouse/cache/http.py\", line 33, in wrapped\n return view(context, request)\n File \"warehouse/accounts/views.py\", line 226, in register\n form.email.data\n File \"warehouse/accounts/services.py\", line 152, in create_user\n self.db.flush()\n\nIntegrityError: (psycopg2.IntegrityError) new row for relation \"accounts_user\" violates check constraint \"accounts_user_valid_username\"\nDETAIL: Failing row contains \n```\n", "before_files": [{"content": "# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport disposable_email_domains\nimport wtforms\nimport wtforms.fields.html5\n\nfrom warehouse import forms, recaptcha\nfrom warehouse.accounts.interfaces import TooManyFailedLogins\n\n\nclass CredentialsMixin:\n username = wtforms.StringField(\n validators=[\n wtforms.validators.DataRequired(),\n wtforms.validators.Length(\n max=50,\n message=(\n \"The username you have chosen is too long. Please choose \"\n \"a username with under 50 characters.\"\n )\n ),\n ],\n )\n\n password = wtforms.PasswordField(\n validators=[\n wtforms.validators.DataRequired(),\n ],\n )\n\n def __init__(self, *args, user_service, **kwargs):\n super().__init__(*args, **kwargs)\n self.user_service = user_service\n\n\nclass RegistrationForm(CredentialsMixin, forms.Form):\n password = wtforms.PasswordField(\n validators=[\n wtforms.validators.DataRequired(),\n forms.PasswordStrengthValidator(\n user_input_fields=[\"full_name\", \"username\", \"email\"],\n ),\n ],\n )\n password_confirm = wtforms.PasswordField(\n validators=[\n wtforms.validators.DataRequired(),\n wtforms.validators.EqualTo(\n \"password\", \"Your passwords do not match. Please try again.\"\n ),\n ],\n )\n\n full_name = wtforms.StringField()\n\n email = wtforms.fields.html5.EmailField(\n validators=[\n wtforms.validators.DataRequired(),\n wtforms.validators.Email(\n message=(\n \"The email address you have chosen is not a valid \"\n \"format. Please try again.\"\n )\n ),\n ],\n )\n\n g_recaptcha_response = wtforms.StringField()\n\n def __init__(self, *args, recaptcha_service, **kwargs):\n super().__init__(*args, **kwargs)\n self.recaptcha_service = recaptcha_service\n\n def validate_username(self, field):\n if self.user_service.find_userid(field.data) is not None:\n raise wtforms.validators.ValidationError(\n \"This username is already being used by another \"\n \"account. Please choose a different username.\"\n )\n\n def validate_email(self, field):\n if self.user_service.find_userid_by_email(field.data) is not None:\n raise wtforms.validators.ValidationError(\n \"This email address is already being used by another account. \"\n \"Please use a different email.\"\n )\n domain = field.data.split('@')[-1]\n if domain in disposable_email_domains.blacklist:\n raise wtforms.validators.ValidationError(\n \"Sorry, you cannot create an account with an email address \"\n \"from this domain. Please use a different email.\"\n )\n\n def validate_g_recaptcha_response(self, field):\n # do required data validation here due to enabled flag being required\n if self.recaptcha_service.enabled and not field.data:\n raise wtforms.validators.ValidationError(\"Recaptcha error.\")\n try:\n self.recaptcha_service.verify_response(field.data)\n except recaptcha.RecaptchaError:\n # TODO: log error\n # don't want to provide the user with any detail\n raise wtforms.validators.ValidationError(\"Recaptcha error.\")\n\n\nclass LoginForm(CredentialsMixin, forms.Form):\n def validate_username(self, field):\n userid = self.user_service.find_userid(field.data)\n\n if userid is None:\n raise wtforms.validators.ValidationError(\n \"No user found with that username. Please try again.\"\n )\n\n def validate_password(self, field):\n userid = self.user_service.find_userid(self.username.data)\n if userid is not None:\n try:\n if not self.user_service.check_password(userid, field.data):\n raise wtforms.validators.ValidationError(\n \"The username and password combination you have \"\n \"provided is invalid. Please try again.\"\n )\n except TooManyFailedLogins:\n raise wtforms.validators.ValidationError(\n \"There have been too many unsuccessful login attempts, \"\n \"please try again later.\"\n ) from None\n", "path": "warehouse/accounts/forms.py"}]} | 2,119 | 196 |
gh_patches_debug_7943 | rasdani/github-patches | git_diff | piskvorky__gensim-2672 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Python 3.7.3, gensim 3.8.1: UnboundLocalError: local variable 'doc_no2' referenced before assignment
Client code:
` model = LogEntropyModel(corpus=data_corpus, normalize=True)
`
Referenced code:
https://github.com/RaRe-Technologies/gensim/blob/44ea7931c916349821aa1c717fbf7e90fb138297/gensim/models/logentropy_model.py#L115
Exception thrown:
```
File "/anaconda3/lib/python3.7/site-packages/gensim/models/logentropy_model.py", line 76, in __init__
self.initialize(corpus)
File "/anaconda3/lib/python3.7/site-packages/gensim/models/logentropy_model.py", line 115, in initialize
if doc_no2 != doc_no:
UnboundLocalError: local variable 'doc_no2' referenced before assignment
```
</issue>
<code>
[start of gensim/models/logentropy_model.py]
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3 #
4 # Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html
5
6 """This module allows simple Bag of Words (BoW) represented corpus to be transformed into log entropy space.
7 It implements Log Entropy Model that produces entropy-weighted logarithmic term frequency representation.
8
9 Empirical study by Lee et al. 2015 [1]_ suggests log entropy-weighted model yields better results among other forms of
10 representation.
11
12 References
13 ----------
14 .. [1] Lee et al. 2005. An Empirical Evaluation of Models of Text Document Similarity.
15 https://escholarship.org/uc/item/48g155nq
16
17 """
18
19 import logging
20 import math
21
22 from gensim import interfaces, matutils, utils
23
24 logger = logging.getLogger(__name__)
25
26
27 class LogEntropyModel(interfaces.TransformationABC):
28 r"""Objects of this class realize the transformation between word-document co-occurrence matrix (int)
29 into a locally/globally weighted matrix (positive floats).
30
31 This is done by a log entropy normalization, optionally normalizing the resulting documents to unit length.
32 The following formulas explain how o compute the log entropy weight for term :math:`i` in document :math:`j`:
33
34 .. math::
35
36 local\_weight_{i,j} = log(frequency_{i,j} + 1)
37
38 P_{i,j} = \frac{frequency_{i,j}}{\sum_j frequency_{i,j}}
39
40 global\_weight_i = 1 + \frac{\sum_j P_{i,j} * log(P_{i,j})}{log(number\_of\_documents + 1)}
41
42 final\_weight_{i,j} = local\_weight_{i,j} * global\_weight_i
43
44 Examples
45 --------
46 .. sourcecode:: pycon
47
48 >>> from gensim.models import LogEntropyModel
49 >>> from gensim.test.utils import common_texts
50 >>> from gensim.corpora import Dictionary
51 >>>
52 >>> dct = Dictionary(common_texts) # fit dictionary
53 >>> corpus = [dct.doc2bow(row) for row in common_texts] # convert to BoW format
54 >>> model = LogEntropyModel(corpus) # fit model
55 >>> vector = model[corpus[1]] # apply model to document
56
57 """
58
59 def __init__(self, corpus, normalize=True):
60 """
61
62 Parameters
63 ----------
64 corpus : iterable of iterable of (int, int)
65 Input corpus in BoW format.
66 normalize : bool, optional
67 If True, the resulted log entropy weighted vector will be normalized to length of 1,
68 If False - do nothing.
69
70 """
71 self.normalize = normalize
72 self.n_docs = 0
73 self.n_words = 0
74 self.entr = {}
75 if corpus is not None:
76 self.initialize(corpus)
77
78 def __str__(self):
79 return "LogEntropyModel(n_docs=%s, n_words=%s)" % (self.n_docs, self.n_words)
80
81 def initialize(self, corpus):
82 """Calculates the global weighting for all terms in a given corpus and transforms the simple
83 count representation into the log entropy normalized space.
84
85 Parameters
86 ----------
87 corpus : iterable of iterable of (int, int)
88 Corpus is BoW format
89
90 """
91 logger.info("calculating counts")
92 glob_freq = {}
93 glob_num_words, doc_no = 0, -1
94 for doc_no, bow in enumerate(corpus):
95 if doc_no % 10000 == 0:
96 logger.info("PROGRESS: processing document #%i", doc_no)
97 glob_num_words += len(bow)
98 for term_id, term_count in bow:
99 glob_freq[term_id] = glob_freq.get(term_id, 0) + term_count
100
101 # keep some stats about the training corpus
102 self.n_docs = doc_no + 1
103 self.n_words = glob_num_words
104
105 # and finally compute the global weights
106 logger.info(
107 "calculating global log entropy weights for %i documents and %i features (%i matrix non-zeros)",
108 self.n_docs, len(glob_freq), self.n_words
109 )
110 logger.debug('iterating over corpus')
111 for doc_no2, bow in enumerate(corpus):
112 for key, freq in bow:
113 p = (float(freq) / glob_freq[key]) * math.log(float(freq) / glob_freq[key])
114 self.entr[key] = self.entr.get(key, 0.0) + p
115 if doc_no2 != doc_no:
116 raise ValueError("LogEntropyModel doesn't support generators as training data")
117
118 logger.debug('iterating over keys')
119 for key in self.entr:
120 self.entr[key] = 1 + self.entr[key] / math.log(self.n_docs + 1)
121
122 def __getitem__(self, bow):
123 """Get log entropy representation of the input vector and/or corpus.
124
125 Parameters
126 ----------
127 bow : list of (int, int)
128 Document in BoW format.
129
130 Returns
131 -------
132 list of (int, float)
133 Log-entropy vector for passed `bow`.
134
135 """
136 # if the input vector is in fact a corpus, return a transformed corpus
137 is_corpus, bow = utils.is_corpus(bow)
138 if is_corpus:
139 return self._apply(bow)
140
141 # unknown (new) terms will be given zero weight (NOT infinity/huge)
142 vector = [
143 (term_id, math.log(tf + 1) * self.entr.get(term_id))
144 for term_id, tf in bow
145 if term_id in self.entr
146 ]
147 if self.normalize:
148 vector = matutils.unitvec(vector)
149 return vector
150
[end of gensim/models/logentropy_model.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/gensim/models/logentropy_model.py b/gensim/models/logentropy_model.py
--- a/gensim/models/logentropy_model.py
+++ b/gensim/models/logentropy_model.py
@@ -108,6 +108,9 @@
self.n_docs, len(glob_freq), self.n_words
)
logger.debug('iterating over corpus')
+
+ # initialize doc_no2 index in case corpus is empty
+ doc_no2 = 0
for doc_no2, bow in enumerate(corpus):
for key, freq in bow:
p = (float(freq) / glob_freq[key]) * math.log(float(freq) / glob_freq[key])
| {"golden_diff": "diff --git a/gensim/models/logentropy_model.py b/gensim/models/logentropy_model.py\n--- a/gensim/models/logentropy_model.py\n+++ b/gensim/models/logentropy_model.py\n@@ -108,6 +108,9 @@\n self.n_docs, len(glob_freq), self.n_words\n )\n logger.debug('iterating over corpus')\n+\n+ # initialize doc_no2 index in case corpus is empty\n+ doc_no2 = 0\n for doc_no2, bow in enumerate(corpus):\n for key, freq in bow:\n p = (float(freq) / glob_freq[key]) * math.log(float(freq) / glob_freq[key])\n", "issue": "Python 3.7.3, gensim 3.8.1: UnboundLocalError: local variable 'doc_no2' referenced before assignment\nClient code:\r\n` model = LogEntropyModel(corpus=data_corpus, normalize=True)\r\n`\r\nReferenced code:\r\nhttps://github.com/RaRe-Technologies/gensim/blob/44ea7931c916349821aa1c717fbf7e90fb138297/gensim/models/logentropy_model.py#L115\r\n\r\nException thrown:\r\n\r\n```\r\n File \"/anaconda3/lib/python3.7/site-packages/gensim/models/logentropy_model.py\", line 76, in __init__\r\n self.initialize(corpus)\r\n File \"/anaconda3/lib/python3.7/site-packages/gensim/models/logentropy_model.py\", line 115, in initialize\r\n if doc_no2 != doc_no:\r\nUnboundLocalError: local variable 'doc_no2' referenced before assignment\r\n\r\n```\n", "before_files": [{"content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\n#\n# Licensed under the GNU LGPL v2.1 - http://www.gnu.org/licenses/lgpl.html\n\n\"\"\"This module allows simple Bag of Words (BoW) represented corpus to be transformed into log entropy space.\nIt implements Log Entropy Model that produces entropy-weighted logarithmic term frequency representation.\n\nEmpirical study by Lee et al. 2015 [1]_ suggests log entropy-weighted model yields better results among other forms of\nrepresentation.\n\nReferences\n----------\n.. [1] Lee et al. 2005. An Empirical Evaluation of Models of Text Document Similarity.\n https://escholarship.org/uc/item/48g155nq\n\n\"\"\"\n\nimport logging\nimport math\n\nfrom gensim import interfaces, matutils, utils\n\nlogger = logging.getLogger(__name__)\n\n\nclass LogEntropyModel(interfaces.TransformationABC):\n r\"\"\"Objects of this class realize the transformation between word-document co-occurrence matrix (int)\n into a locally/globally weighted matrix (positive floats).\n\n This is done by a log entropy normalization, optionally normalizing the resulting documents to unit length.\n The following formulas explain how o compute the log entropy weight for term :math:`i` in document :math:`j`:\n\n .. math::\n\n local\\_weight_{i,j} = log(frequency_{i,j} + 1)\n\n P_{i,j} = \\frac{frequency_{i,j}}{\\sum_j frequency_{i,j}}\n\n global\\_weight_i = 1 + \\frac{\\sum_j P_{i,j} * log(P_{i,j})}{log(number\\_of\\_documents + 1)}\n\n final\\_weight_{i,j} = local\\_weight_{i,j} * global\\_weight_i\n\n Examples\n --------\n .. sourcecode:: pycon\n\n >>> from gensim.models import LogEntropyModel\n >>> from gensim.test.utils import common_texts\n >>> from gensim.corpora import Dictionary\n >>>\n >>> dct = Dictionary(common_texts) # fit dictionary\n >>> corpus = [dct.doc2bow(row) for row in common_texts] # convert to BoW format\n >>> model = LogEntropyModel(corpus) # fit model\n >>> vector = model[corpus[1]] # apply model to document\n\n \"\"\"\n\n def __init__(self, corpus, normalize=True):\n \"\"\"\n\n Parameters\n ----------\n corpus : iterable of iterable of (int, int)\n Input corpus in BoW format.\n normalize : bool, optional\n If True, the resulted log entropy weighted vector will be normalized to length of 1,\n If False - do nothing.\n\n \"\"\"\n self.normalize = normalize\n self.n_docs = 0\n self.n_words = 0\n self.entr = {}\n if corpus is not None:\n self.initialize(corpus)\n\n def __str__(self):\n return \"LogEntropyModel(n_docs=%s, n_words=%s)\" % (self.n_docs, self.n_words)\n\n def initialize(self, corpus):\n \"\"\"Calculates the global weighting for all terms in a given corpus and transforms the simple\n count representation into the log entropy normalized space.\n\n Parameters\n ----------\n corpus : iterable of iterable of (int, int)\n Corpus is BoW format\n\n \"\"\"\n logger.info(\"calculating counts\")\n glob_freq = {}\n glob_num_words, doc_no = 0, -1\n for doc_no, bow in enumerate(corpus):\n if doc_no % 10000 == 0:\n logger.info(\"PROGRESS: processing document #%i\", doc_no)\n glob_num_words += len(bow)\n for term_id, term_count in bow:\n glob_freq[term_id] = glob_freq.get(term_id, 0) + term_count\n\n # keep some stats about the training corpus\n self.n_docs = doc_no + 1\n self.n_words = glob_num_words\n\n # and finally compute the global weights\n logger.info(\n \"calculating global log entropy weights for %i documents and %i features (%i matrix non-zeros)\",\n self.n_docs, len(glob_freq), self.n_words\n )\n logger.debug('iterating over corpus')\n for doc_no2, bow in enumerate(corpus):\n for key, freq in bow:\n p = (float(freq) / glob_freq[key]) * math.log(float(freq) / glob_freq[key])\n self.entr[key] = self.entr.get(key, 0.0) + p\n if doc_no2 != doc_no:\n raise ValueError(\"LogEntropyModel doesn't support generators as training data\")\n\n logger.debug('iterating over keys')\n for key in self.entr:\n self.entr[key] = 1 + self.entr[key] / math.log(self.n_docs + 1)\n\n def __getitem__(self, bow):\n \"\"\"Get log entropy representation of the input vector and/or corpus.\n\n Parameters\n ----------\n bow : list of (int, int)\n Document in BoW format.\n\n Returns\n -------\n list of (int, float)\n Log-entropy vector for passed `bow`.\n\n \"\"\"\n # if the input vector is in fact a corpus, return a transformed corpus\n is_corpus, bow = utils.is_corpus(bow)\n if is_corpus:\n return self._apply(bow)\n\n # unknown (new) terms will be given zero weight (NOT infinity/huge)\n vector = [\n (term_id, math.log(tf + 1) * self.entr.get(term_id))\n for term_id, tf in bow\n if term_id in self.entr\n ]\n if self.normalize:\n vector = matutils.unitvec(vector)\n return vector\n", "path": "gensim/models/logentropy_model.py"}]} | 2,367 | 150 |
gh_patches_debug_26989 | rasdani/github-patches | git_diff | aws__aws-cli-2659 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
cloudformation deploy fails if new parameters are not overridden even if they have default value
After adding new parameters to the template, it has to be deployed with --parameters-override for all the new parameters even if they have default value, otherwise deploy fails with:
> An error occurred (ValidationError) when calling the CreateChangeSet operation: Invalid input for parameter key Param2. Cannot specify usePreviousValue as true for a parameter key not in the previous template
To reproduce, deploy simple template:
```
AWSTemplateFormatVersion : '2010-09-09'
Transform: AWS::Serverless-2016-10-31
Description: A hello world application.
Parameters:
Param1:
Default: 123
Type: String
Resources:
HelloWorldFunction:
Type: AWS::Serverless::Function
Properties:
Handler: index.handler
Runtime: nodejs4.3
CodeUri: ./hello.zip
```
add some parameter to it:
```
...
Parameters:
Param1:
Default: 123
Type: String
Param2:
Default: 123
Type: String
...
```
Try to deploy again, it fails with aforementioned error.
</issue>
<code>
[start of awscli/customizations/cloudformation/deployer.py]
1 # Copyright 2012-2015 Amazon.com, Inc. or its affiliates. All Rights Reserved.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License"). You
4 # may not use this file except in compliance with the License. A copy of
5 # the License is located at
6 #
7 # http://aws.amazon.com/apache2.0/
8 #
9 # or in the "license" file accompanying this file. This file is
10 # distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
11 # ANY KIND, either express or implied. See the License for the specific
12 # language governing permissions and limitations under the License.
13
14 import sys
15 import time
16 import logging
17 import botocore
18 import collections
19
20 from awscli.customizations.cloudformation import exceptions
21 from datetime import datetime
22
23 LOG = logging.getLogger(__name__)
24
25 ChangeSetResult = collections.namedtuple(
26 "ChangeSetResult", ["changeset_id", "changeset_type"])
27
28
29 class Deployer(object):
30
31 def __init__(self, cloudformation_client,
32 changeset_prefix="awscli-cloudformation-package-deploy-"):
33 self._client = cloudformation_client
34 self.changeset_prefix = changeset_prefix
35
36 def has_stack(self, stack_name):
37 """
38 Checks if a CloudFormation stack with given name exists
39
40 :param stack_name: Name or ID of the stack
41 :return: True if stack exists. False otherwise
42 """
43 try:
44 resp = self._client.describe_stacks(StackName=stack_name)
45 if len(resp["Stacks"]) != 1:
46 return False
47
48 # When you run CreateChangeSet on a a stack that does not exist,
49 # CloudFormation will create a stack and set it's status
50 # REVIEW_IN_PROGRESS. However this stack is cannot be manipulated
51 # by "update" commands. Under this circumstances, we treat like
52 # this stack does not exist and call CreateChangeSet will
53 # ChangeSetType set to CREATE and not UPDATE.
54 stack = resp["Stacks"][0]
55 return stack["StackStatus"] != "REVIEW_IN_PROGRESS"
56
57 except botocore.exceptions.ClientError as e:
58 # If a stack does not exist, describe_stacks will throw an
59 # exception. Unfortunately we don't have a better way than parsing
60 # the exception msg to understand the nature of this exception.
61 msg = str(e)
62
63 if "Stack with id {0} does not exist".format(stack_name) in msg:
64 LOG.debug("Stack with id {0} does not exist".format(
65 stack_name))
66 return False
67 else:
68 # We don't know anything about this exception. Don't handle
69 LOG.debug("Unable to get stack details.", exc_info=e)
70 raise e
71
72 def create_changeset(self, stack_name, cfn_template,
73 parameter_values, capabilities, role_arn,
74 notification_arns):
75 """
76 Call Cloudformation to create a changeset and wait for it to complete
77
78 :param stack_name: Name or ID of stack
79 :param cfn_template: CloudFormation template string
80 :param parameter_values: Template parameters object
81 :param capabilities: Array of capabilities passed to CloudFormation
82 :return:
83 """
84
85 now = datetime.utcnow().isoformat()
86 description = "Created by AWS CLI at {0} UTC".format(now)
87
88 # Each changeset will get a unique name based on time
89 changeset_name = self.changeset_prefix + str(int(time.time()))
90
91 changeset_type = "UPDATE"
92 if not self.has_stack(stack_name):
93 changeset_type = "CREATE"
94 # When creating a new stack, UsePreviousValue=True is invalid.
95 # For such parameters, users should either override with new value,
96 # or set a Default value in template to successfully create a stack.
97 parameter_values = [x for x in parameter_values
98 if not x.get("UsePreviousValue", False)]
99
100 kwargs = {
101 'ChangeSetName': changeset_name,
102 'StackName': stack_name,
103 'TemplateBody': cfn_template,
104 'ChangeSetType': changeset_type,
105 'Parameters': parameter_values,
106 'Capabilities': capabilities,
107 'Description': description,
108 }
109 # don't set these arguments if not specified to use existing values
110 if role_arn is not None:
111 kwargs['RoleARN'] = role_arn
112 if notification_arns is not None:
113 kwargs['NotificationARNs'] = notification_arns
114 try:
115 resp = self._client.create_change_set(**kwargs)
116 return ChangeSetResult(resp["Id"], changeset_type)
117 except Exception as ex:
118 LOG.debug("Unable to create changeset", exc_info=ex)
119 raise ex
120
121 def wait_for_changeset(self, changeset_id, stack_name):
122 """
123 Waits until the changeset creation completes
124
125 :param changeset_id: ID or name of the changeset
126 :param stack_name: Stack name
127 :return: Latest status of the create-change-set operation
128 """
129 sys.stdout.write("Waiting for changeset to be created..\n")
130 sys.stdout.flush()
131
132 # Wait for changeset to be created
133 waiter = self._client.get_waiter("change_set_create_complete")
134 # Poll every 5 seconds. Changeset creation should be fast
135 waiter_config = {'Delay': 5}
136 try:
137 waiter.wait(ChangeSetName=changeset_id, StackName=stack_name,
138 WaiterConfig=waiter_config)
139 except botocore.exceptions.WaiterError as ex:
140 LOG.debug("Create changeset waiter exception", exc_info=ex)
141
142 resp = ex.last_response
143 status = resp["Status"]
144 reason = resp["StatusReason"]
145
146 if status == "FAILED" and \
147 "The submitted information didn't contain changes." in reason:
148 raise exceptions.ChangeEmptyError(stack_name=stack_name)
149
150 raise RuntimeError("Failed to create the changeset: {0} "
151 "Status: {1}. Reason: {2}"
152 .format(ex, status, reason))
153
154 def execute_changeset(self, changeset_id, stack_name):
155 """
156 Calls CloudFormation to execute changeset
157
158 :param changeset_id: ID of the changeset
159 :param stack_name: Name or ID of the stack
160 :return: Response from execute-change-set call
161 """
162 return self._client.execute_change_set(
163 ChangeSetName=changeset_id,
164 StackName=stack_name)
165
166 def wait_for_execute(self, stack_name, changeset_type):
167
168 sys.stdout.write("Waiting for stack create/update to complete\n")
169 sys.stdout.flush()
170
171 # Pick the right waiter
172 if changeset_type == "CREATE":
173 waiter = self._client.get_waiter("stack_create_complete")
174 elif changeset_type == "UPDATE":
175 waiter = self._client.get_waiter("stack_update_complete")
176 else:
177 raise RuntimeError("Invalid changeset type {0}"
178 .format(changeset_type))
179
180 # Poll every 5 seconds. Optimizing for the case when the stack has only
181 # minimal changes, such the Code for Lambda Function
182 waiter_config = {
183 'Delay': 5,
184 'MaxAttempts': 720,
185 }
186
187 try:
188 waiter.wait(StackName=stack_name, WaiterConfig=waiter_config)
189 except botocore.exceptions.WaiterError as ex:
190 LOG.debug("Execute changeset waiter exception", exc_info=ex)
191
192 raise exceptions.DeployFailedError(stack_name=stack_name)
193
194 def create_and_wait_for_changeset(self, stack_name, cfn_template,
195 parameter_values, capabilities, role_arn,
196 notification_arns):
197
198 result = self.create_changeset(
199 stack_name, cfn_template, parameter_values, capabilities,
200 role_arn, notification_arns)
201
202 self.wait_for_changeset(result.changeset_id, stack_name)
203
204 return result
205
[end of awscli/customizations/cloudformation/deployer.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/awscli/customizations/cloudformation/deployer.py b/awscli/customizations/cloudformation/deployer.py
--- a/awscli/customizations/cloudformation/deployer.py
+++ b/awscli/customizations/cloudformation/deployer.py
@@ -88,7 +88,6 @@
# Each changeset will get a unique name based on time
changeset_name = self.changeset_prefix + str(int(time.time()))
- changeset_type = "UPDATE"
if not self.has_stack(stack_name):
changeset_type = "CREATE"
# When creating a new stack, UsePreviousValue=True is invalid.
@@ -96,6 +95,15 @@
# or set a Default value in template to successfully create a stack.
parameter_values = [x for x in parameter_values
if not x.get("UsePreviousValue", False)]
+ else:
+ changeset_type = "UPDATE"
+ # UsePreviousValue not valid if parameter is new
+ summary = self._client.get_template_summary(StackName=stack_name)
+ existing_parameters = [parameter['ParameterKey'] for parameter in \
+ summary['Parameters']]
+ parameter_values = [x for x in parameter_values
+ if not (x.get("UsePreviousValue", False) and \
+ x["ParameterKey"] not in existing_parameters)]
kwargs = {
'ChangeSetName': changeset_name,
| {"golden_diff": "diff --git a/awscli/customizations/cloudformation/deployer.py b/awscli/customizations/cloudformation/deployer.py\n--- a/awscli/customizations/cloudformation/deployer.py\n+++ b/awscli/customizations/cloudformation/deployer.py\n@@ -88,7 +88,6 @@\n # Each changeset will get a unique name based on time\n changeset_name = self.changeset_prefix + str(int(time.time()))\n \n- changeset_type = \"UPDATE\"\n if not self.has_stack(stack_name):\n changeset_type = \"CREATE\"\n # When creating a new stack, UsePreviousValue=True is invalid.\n@@ -96,6 +95,15 @@\n # or set a Default value in template to successfully create a stack.\n parameter_values = [x for x in parameter_values\n if not x.get(\"UsePreviousValue\", False)]\n+ else:\n+ changeset_type = \"UPDATE\"\n+ # UsePreviousValue not valid if parameter is new\n+ summary = self._client.get_template_summary(StackName=stack_name)\n+ existing_parameters = [parameter['ParameterKey'] for parameter in \\\n+ summary['Parameters']]\n+ parameter_values = [x for x in parameter_values\n+ if not (x.get(\"UsePreviousValue\", False) and \\\n+ x[\"ParameterKey\"] not in existing_parameters)]\n \n kwargs = {\n 'ChangeSetName': changeset_name,\n", "issue": "cloudformation deploy fails if new parameters are not overridden even if they have default value\nAfter adding new parameters to the template, it has to be deployed with --parameters-override for all the new parameters even if they have default value, otherwise deploy fails with: \r\n\r\n> An error occurred (ValidationError) when calling the CreateChangeSet operation: Invalid input for parameter key Param2. Cannot specify usePreviousValue as true for a parameter key not in the previous template\r\n\r\nTo reproduce, deploy simple template:\r\n```\r\nAWSTemplateFormatVersion : '2010-09-09'\r\nTransform: AWS::Serverless-2016-10-31\r\nDescription: A hello world application.\r\nParameters:\r\n Param1:\r\n Default: 123\r\n Type: String\r\nResources:\r\n HelloWorldFunction:\r\n Type: AWS::Serverless::Function\r\n Properties:\r\n Handler: index.handler\r\n Runtime: nodejs4.3\r\n CodeUri: ./hello.zip\r\n```\r\n\r\nadd some parameter to it:\r\n\r\n```\r\n...\r\nParameters:\r\n Param1:\r\n Default: 123\r\n Type: String\r\n Param2:\r\n Default: 123\r\n Type: String\r\n...\r\n```\r\n\r\nTry to deploy again, it fails with aforementioned error. \n", "before_files": [{"content": "# Copyright 2012-2015 Amazon.com, Inc. or its affiliates. All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\"). You\n# may not use this file except in compliance with the License. A copy of\n# the License is located at\n#\n# http://aws.amazon.com/apache2.0/\n#\n# or in the \"license\" file accompanying this file. This file is\n# distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF\n# ANY KIND, either express or implied. See the License for the specific\n# language governing permissions and limitations under the License.\n\nimport sys\nimport time\nimport logging\nimport botocore\nimport collections\n\nfrom awscli.customizations.cloudformation import exceptions\nfrom datetime import datetime\n\nLOG = logging.getLogger(__name__)\n\nChangeSetResult = collections.namedtuple(\n \"ChangeSetResult\", [\"changeset_id\", \"changeset_type\"])\n\n\nclass Deployer(object):\n\n def __init__(self, cloudformation_client,\n changeset_prefix=\"awscli-cloudformation-package-deploy-\"):\n self._client = cloudformation_client\n self.changeset_prefix = changeset_prefix\n\n def has_stack(self, stack_name):\n \"\"\"\n Checks if a CloudFormation stack with given name exists\n\n :param stack_name: Name or ID of the stack\n :return: True if stack exists. False otherwise\n \"\"\"\n try:\n resp = self._client.describe_stacks(StackName=stack_name)\n if len(resp[\"Stacks\"]) != 1:\n return False\n\n # When you run CreateChangeSet on a a stack that does not exist,\n # CloudFormation will create a stack and set it's status\n # REVIEW_IN_PROGRESS. However this stack is cannot be manipulated\n # by \"update\" commands. Under this circumstances, we treat like\n # this stack does not exist and call CreateChangeSet will\n # ChangeSetType set to CREATE and not UPDATE.\n stack = resp[\"Stacks\"][0]\n return stack[\"StackStatus\"] != \"REVIEW_IN_PROGRESS\"\n\n except botocore.exceptions.ClientError as e:\n # If a stack does not exist, describe_stacks will throw an\n # exception. Unfortunately we don't have a better way than parsing\n # the exception msg to understand the nature of this exception.\n msg = str(e)\n\n if \"Stack with id {0} does not exist\".format(stack_name) in msg:\n LOG.debug(\"Stack with id {0} does not exist\".format(\n stack_name))\n return False\n else:\n # We don't know anything about this exception. Don't handle\n LOG.debug(\"Unable to get stack details.\", exc_info=e)\n raise e\n\n def create_changeset(self, stack_name, cfn_template,\n parameter_values, capabilities, role_arn,\n notification_arns):\n \"\"\"\n Call Cloudformation to create a changeset and wait for it to complete\n\n :param stack_name: Name or ID of stack\n :param cfn_template: CloudFormation template string\n :param parameter_values: Template parameters object\n :param capabilities: Array of capabilities passed to CloudFormation\n :return:\n \"\"\"\n\n now = datetime.utcnow().isoformat()\n description = \"Created by AWS CLI at {0} UTC\".format(now)\n\n # Each changeset will get a unique name based on time\n changeset_name = self.changeset_prefix + str(int(time.time()))\n\n changeset_type = \"UPDATE\"\n if not self.has_stack(stack_name):\n changeset_type = \"CREATE\"\n # When creating a new stack, UsePreviousValue=True is invalid.\n # For such parameters, users should either override with new value,\n # or set a Default value in template to successfully create a stack.\n parameter_values = [x for x in parameter_values\n if not x.get(\"UsePreviousValue\", False)]\n\n kwargs = {\n 'ChangeSetName': changeset_name,\n 'StackName': stack_name,\n 'TemplateBody': cfn_template,\n 'ChangeSetType': changeset_type,\n 'Parameters': parameter_values,\n 'Capabilities': capabilities,\n 'Description': description,\n }\n # don't set these arguments if not specified to use existing values\n if role_arn is not None:\n kwargs['RoleARN'] = role_arn\n if notification_arns is not None:\n kwargs['NotificationARNs'] = notification_arns\n try:\n resp = self._client.create_change_set(**kwargs)\n return ChangeSetResult(resp[\"Id\"], changeset_type)\n except Exception as ex:\n LOG.debug(\"Unable to create changeset\", exc_info=ex)\n raise ex\n\n def wait_for_changeset(self, changeset_id, stack_name):\n \"\"\"\n Waits until the changeset creation completes\n\n :param changeset_id: ID or name of the changeset\n :param stack_name: Stack name\n :return: Latest status of the create-change-set operation\n \"\"\"\n sys.stdout.write(\"Waiting for changeset to be created..\\n\")\n sys.stdout.flush()\n\n # Wait for changeset to be created\n waiter = self._client.get_waiter(\"change_set_create_complete\")\n # Poll every 5 seconds. Changeset creation should be fast\n waiter_config = {'Delay': 5}\n try:\n waiter.wait(ChangeSetName=changeset_id, StackName=stack_name,\n WaiterConfig=waiter_config)\n except botocore.exceptions.WaiterError as ex:\n LOG.debug(\"Create changeset waiter exception\", exc_info=ex)\n\n resp = ex.last_response\n status = resp[\"Status\"]\n reason = resp[\"StatusReason\"]\n\n if status == \"FAILED\" and \\\n \"The submitted information didn't contain changes.\" in reason:\n raise exceptions.ChangeEmptyError(stack_name=stack_name)\n\n raise RuntimeError(\"Failed to create the changeset: {0} \"\n \"Status: {1}. Reason: {2}\"\n .format(ex, status, reason))\n\n def execute_changeset(self, changeset_id, stack_name):\n \"\"\"\n Calls CloudFormation to execute changeset\n\n :param changeset_id: ID of the changeset\n :param stack_name: Name or ID of the stack\n :return: Response from execute-change-set call\n \"\"\"\n return self._client.execute_change_set(\n ChangeSetName=changeset_id,\n StackName=stack_name)\n\n def wait_for_execute(self, stack_name, changeset_type):\n\n sys.stdout.write(\"Waiting for stack create/update to complete\\n\")\n sys.stdout.flush()\n\n # Pick the right waiter\n if changeset_type == \"CREATE\":\n waiter = self._client.get_waiter(\"stack_create_complete\")\n elif changeset_type == \"UPDATE\":\n waiter = self._client.get_waiter(\"stack_update_complete\")\n else:\n raise RuntimeError(\"Invalid changeset type {0}\"\n .format(changeset_type))\n\n # Poll every 5 seconds. Optimizing for the case when the stack has only\n # minimal changes, such the Code for Lambda Function\n waiter_config = {\n 'Delay': 5,\n 'MaxAttempts': 720,\n }\n\n try:\n waiter.wait(StackName=stack_name, WaiterConfig=waiter_config)\n except botocore.exceptions.WaiterError as ex:\n LOG.debug(\"Execute changeset waiter exception\", exc_info=ex)\n\n raise exceptions.DeployFailedError(stack_name=stack_name)\n\n def create_and_wait_for_changeset(self, stack_name, cfn_template,\n parameter_values, capabilities, role_arn,\n notification_arns):\n\n result = self.create_changeset(\n stack_name, cfn_template, parameter_values, capabilities,\n role_arn, notification_arns)\n\n self.wait_for_changeset(result.changeset_id, stack_name)\n\n return result\n", "path": "awscli/customizations/cloudformation/deployer.py"}]} | 3,045 | 306 |
gh_patches_debug_59953 | rasdani/github-patches | git_diff | deepset-ai__haystack-119 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Embedding failed with large-nli-stsb model but work for base model
Trying to make use of the pre-trained model in sentence-transformer. It works for base model (tried bert-base and roberta-base) but failed in large models (for roberta and I think bert as well) with the following errors at time of embedding corpus:
Seems like size of the embedding is too large to write as Elasticsearch index?
</issue>
<code>
[start of haystack/database/elasticsearch.py]
1 import json
2 import logging
3 from string import Template
4
5 from elasticsearch import Elasticsearch
6 from elasticsearch.helpers import bulk, scan
7
8 from haystack.database.base import BaseDocumentStore, Document
9
10 logger = logging.getLogger(__name__)
11
12
13 class ElasticsearchDocumentStore(BaseDocumentStore):
14 def __init__(
15 self,
16 host="localhost",
17 username="",
18 password="",
19 index="document",
20 search_fields="text",
21 text_field="text",
22 name_field="name",
23 external_source_id_field="external_source_id",
24 tag_fields=None,
25 embedding_field=None,
26 embedding_dim=None,
27 custom_mapping=None,
28 excluded_meta_data=None,
29 scheme="http",
30 ca_certs=False,
31 verify_certs=True,
32 create_index=True
33 ):
34 self.client = Elasticsearch(hosts=[{"host": host}], http_auth=(username, password),
35 scheme=scheme, ca_certs=ca_certs, verify_certs=verify_certs)
36
37 # if no custom_mapping is supplied, use the default mapping
38 if not custom_mapping:
39 custom_mapping = {
40 "mappings": {
41 "properties": {
42 name_field: {"type": "text"},
43 text_field: {"type": "text"},
44 external_source_id_field: {"type": "text"},
45 }
46 }
47 }
48 if embedding_field:
49 custom_mapping["mappings"]["properties"][embedding_field] = {"type": "dense_vector",
50 "dims": embedding_dim}
51 # create an index if not exists
52 if create_index:
53 self.client.indices.create(index=index, ignore=400, body=custom_mapping)
54 self.index = index
55
56 # configure mappings to ES fields that will be used for querying / displaying results
57 if type(search_fields) == str:
58 search_fields = [search_fields]
59
60 #TODO we should implement a more flexible interal mapping here that simplifies the usage of additional,
61 # custom fields (e.g. meta data you want to return)
62 self.search_fields = search_fields
63 self.text_field = text_field
64 self.name_field = name_field
65 self.tag_fields = tag_fields
66 self.external_source_id_field = external_source_id_field
67 self.embedding_field = embedding_field
68 self.excluded_meta_data = excluded_meta_data
69
70 def get_document_by_id(self, id: str) -> Document:
71 query = {"query": {"ids": {"values": [id]}}}
72 result = self.client.search(index=self.index, body=query)["hits"]["hits"]
73
74 document = self._convert_es_hit_to_document(result[0]) if result else None
75 return document
76
77 def get_document_ids_by_tags(self, tags: dict) -> [str]:
78 term_queries = [{"terms": {key: value}} for key, value in tags.items()]
79 query = {"query": {"bool": {"must": term_queries}}}
80 logger.debug(f"Tag filter query: {query}")
81 result = self.client.search(index=self.index, body=query, size=10000)["hits"]["hits"]
82 doc_ids = []
83 for hit in result:
84 doc_ids.append(hit["_id"])
85 return doc_ids
86
87 def write_documents(self, documents):
88 for doc in documents:
89 doc["_op_type"] = "create"
90 doc["_index"] = self.index
91
92 bulk(self.client, documents)
93
94 def get_document_count(self):
95 result = self.client.count()
96 count = result["count"]
97 return count
98
99 def get_all_documents(self):
100 result = scan(self.client, query={"query": {"match_all": {}}}, index=self.index)
101 documents = [self._convert_es_hit_to_document(hit) for hit in result]
102
103 return documents
104
105 def query(
106 self,
107 query: str,
108 filters: dict = None,
109 top_k: int = 10,
110 custom_query: str = None,
111 ) -> [Document]:
112
113 if custom_query: # substitute placeholder for question and filters for the custom_query template string
114 template = Template(custom_query)
115
116 substitutions = {"question": query} # replace all "${question}" placeholder(s) with query
117 # replace all filter values placeholders with a list of strings(in JSON format) for each filter
118 if filters:
119 for key, values in filters.items():
120 values_str = json.dumps(values)
121 substitutions[key] = values_str
122 custom_query_json = template.substitute(**substitutions)
123 body = json.loads(custom_query_json)
124 else:
125 body = {
126 "size": top_k,
127 "query": {
128 "bool": {
129 "should": [{"multi_match": {"query": query, "type": "most_fields", "fields": self.search_fields}}]
130 }
131 },
132 }
133
134 if filters:
135 filter_clause = []
136 for key, values in filters.items():
137 filter_clause.append(
138 {
139 "terms": {key: values}
140 }
141 )
142 body["query"]["bool"]["filter"] = filter_clause
143
144 if self.excluded_meta_data:
145 body["_source"] = {"excludes": self.excluded_meta_data}
146
147 logger.debug(f"Retriever query: {body}")
148 result = self.client.search(index=self.index, body=body)["hits"]["hits"]
149
150 documents = [self._convert_es_hit_to_document(hit) for hit in result]
151 return documents
152
153 def query_by_embedding(self, query_emb, top_k=10, candidate_doc_ids=None) -> [Document]:
154 if not self.embedding_field:
155 raise RuntimeError("Please specify arg `embedding_field` in ElasticsearchDocumentStore()")
156 else:
157 # +1 in cosine similarity to avoid negative numbers
158 body= {
159 "size": top_k,
160 "query": {
161 "script_score": {
162 "query": {"match_all": {}},
163 "script": {
164 "source": f"cosineSimilarity(params.query_vector,doc['{self.embedding_field}']) + 1.0",
165 "params": {
166 "query_vector": query_emb
167 }
168 }
169 }
170 }
171 }
172
173 if candidate_doc_ids:
174 body["query"]["script_score"]["query"] = {
175 "bool": {
176 "should": [{"match_all": {}}],
177 "filter": [{"terms": {"_id": candidate_doc_ids}}]
178 }}
179
180 if self.excluded_meta_data:
181 body["_source"] = {"excludes": self.excluded_meta_data}
182
183 logger.debug(f"Retriever query: {body}")
184 result = self.client.search(index=self.index, body=body)["hits"]["hits"]
185
186 documents = [self._convert_es_hit_to_document(hit, score_adjustment=-1) for hit in result]
187 return documents
188
189 def _convert_es_hit_to_document(self, hit, score_adjustment=0) -> Document:
190 # We put all additional data of the doc into meta_data and return it in the API
191 meta_data = {k:v for k,v in hit["_source"].items() if k not in (self.text_field, self.external_source_id_field)}
192 meta_data["name"] = meta_data.pop(self.name_field, None)
193
194 document = Document(
195 id=hit["_id"],
196 text=hit["_source"][self.text_field],
197 external_source_id=hit["_source"].get(self.external_source_id_field),
198 meta=meta_data,
199 query_score=hit["_score"] + score_adjustment if hit["_score"] else None,
200 )
201 return document
202
[end of haystack/database/elasticsearch.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/haystack/database/elasticsearch.py b/haystack/database/elasticsearch.py
--- a/haystack/database/elasticsearch.py
+++ b/haystack/database/elasticsearch.py
@@ -89,7 +89,7 @@
doc["_op_type"] = "create"
doc["_index"] = self.index
- bulk(self.client, documents)
+ bulk(self.client, documents, request_timeout=30)
def get_document_count(self):
result = self.client.count()
| {"golden_diff": "diff --git a/haystack/database/elasticsearch.py b/haystack/database/elasticsearch.py\n--- a/haystack/database/elasticsearch.py\n+++ b/haystack/database/elasticsearch.py\n@@ -89,7 +89,7 @@\n doc[\"_op_type\"] = \"create\"\n doc[\"_index\"] = self.index\n \n- bulk(self.client, documents)\n+ bulk(self.client, documents, request_timeout=30)\n \n def get_document_count(self):\n result = self.client.count()\n", "issue": "Embedding failed with large-nli-stsb model but work for base model\nTrying to make use of the pre-trained model in sentence-transformer. It works for base model (tried bert-base and roberta-base) but failed in large models (for roberta and I think bert as well) with the following errors at time of embedding corpus:\r\n\r\n\r\n\r\nSeems like size of the embedding is too large to write as Elasticsearch index?\n", "before_files": [{"content": "import json\nimport logging\nfrom string import Template\n\nfrom elasticsearch import Elasticsearch\nfrom elasticsearch.helpers import bulk, scan\n\nfrom haystack.database.base import BaseDocumentStore, Document\n\nlogger = logging.getLogger(__name__)\n\n\nclass ElasticsearchDocumentStore(BaseDocumentStore):\n def __init__(\n self,\n host=\"localhost\",\n username=\"\",\n password=\"\",\n index=\"document\",\n search_fields=\"text\",\n text_field=\"text\",\n name_field=\"name\",\n external_source_id_field=\"external_source_id\",\n tag_fields=None,\n embedding_field=None,\n embedding_dim=None,\n custom_mapping=None,\n excluded_meta_data=None,\n scheme=\"http\",\n ca_certs=False,\n verify_certs=True,\n create_index=True\n ):\n self.client = Elasticsearch(hosts=[{\"host\": host}], http_auth=(username, password),\n scheme=scheme, ca_certs=ca_certs, verify_certs=verify_certs)\n\n # if no custom_mapping is supplied, use the default mapping\n if not custom_mapping:\n custom_mapping = {\n \"mappings\": {\n \"properties\": {\n name_field: {\"type\": \"text\"},\n text_field: {\"type\": \"text\"},\n external_source_id_field: {\"type\": \"text\"},\n }\n }\n }\n if embedding_field:\n custom_mapping[\"mappings\"][\"properties\"][embedding_field] = {\"type\": \"dense_vector\",\n \"dims\": embedding_dim}\n # create an index if not exists\n if create_index:\n self.client.indices.create(index=index, ignore=400, body=custom_mapping)\n self.index = index\n\n # configure mappings to ES fields that will be used for querying / displaying results\n if type(search_fields) == str:\n search_fields = [search_fields]\n\n #TODO we should implement a more flexible interal mapping here that simplifies the usage of additional,\n # custom fields (e.g. meta data you want to return)\n self.search_fields = search_fields\n self.text_field = text_field\n self.name_field = name_field\n self.tag_fields = tag_fields\n self.external_source_id_field = external_source_id_field\n self.embedding_field = embedding_field\n self.excluded_meta_data = excluded_meta_data\n\n def get_document_by_id(self, id: str) -> Document:\n query = {\"query\": {\"ids\": {\"values\": [id]}}}\n result = self.client.search(index=self.index, body=query)[\"hits\"][\"hits\"]\n\n document = self._convert_es_hit_to_document(result[0]) if result else None\n return document\n\n def get_document_ids_by_tags(self, tags: dict) -> [str]:\n term_queries = [{\"terms\": {key: value}} for key, value in tags.items()]\n query = {\"query\": {\"bool\": {\"must\": term_queries}}}\n logger.debug(f\"Tag filter query: {query}\")\n result = self.client.search(index=self.index, body=query, size=10000)[\"hits\"][\"hits\"]\n doc_ids = []\n for hit in result:\n doc_ids.append(hit[\"_id\"])\n return doc_ids\n\n def write_documents(self, documents):\n for doc in documents:\n doc[\"_op_type\"] = \"create\"\n doc[\"_index\"] = self.index\n\n bulk(self.client, documents)\n\n def get_document_count(self):\n result = self.client.count()\n count = result[\"count\"]\n return count\n\n def get_all_documents(self):\n result = scan(self.client, query={\"query\": {\"match_all\": {}}}, index=self.index)\n documents = [self._convert_es_hit_to_document(hit) for hit in result]\n\n return documents\n\n def query(\n self,\n query: str,\n filters: dict = None,\n top_k: int = 10,\n custom_query: str = None,\n ) -> [Document]:\n\n if custom_query: # substitute placeholder for question and filters for the custom_query template string\n template = Template(custom_query)\n\n substitutions = {\"question\": query} # replace all \"${question}\" placeholder(s) with query\n # replace all filter values placeholders with a list of strings(in JSON format) for each filter\n if filters:\n for key, values in filters.items():\n values_str = json.dumps(values)\n substitutions[key] = values_str\n custom_query_json = template.substitute(**substitutions)\n body = json.loads(custom_query_json)\n else:\n body = {\n \"size\": top_k,\n \"query\": {\n \"bool\": {\n \"should\": [{\"multi_match\": {\"query\": query, \"type\": \"most_fields\", \"fields\": self.search_fields}}]\n }\n },\n }\n\n if filters:\n filter_clause = []\n for key, values in filters.items():\n filter_clause.append(\n {\n \"terms\": {key: values}\n }\n )\n body[\"query\"][\"bool\"][\"filter\"] = filter_clause\n\n if self.excluded_meta_data:\n body[\"_source\"] = {\"excludes\": self.excluded_meta_data}\n\n logger.debug(f\"Retriever query: {body}\")\n result = self.client.search(index=self.index, body=body)[\"hits\"][\"hits\"]\n\n documents = [self._convert_es_hit_to_document(hit) for hit in result]\n return documents\n\n def query_by_embedding(self, query_emb, top_k=10, candidate_doc_ids=None) -> [Document]:\n if not self.embedding_field:\n raise RuntimeError(\"Please specify arg `embedding_field` in ElasticsearchDocumentStore()\")\n else:\n # +1 in cosine similarity to avoid negative numbers\n body= {\n \"size\": top_k,\n \"query\": {\n \"script_score\": {\n \"query\": {\"match_all\": {}},\n \"script\": {\n \"source\": f\"cosineSimilarity(params.query_vector,doc['{self.embedding_field}']) + 1.0\",\n \"params\": {\n \"query_vector\": query_emb\n }\n }\n }\n }\n }\n\n if candidate_doc_ids:\n body[\"query\"][\"script_score\"][\"query\"] = {\n \"bool\": {\n \"should\": [{\"match_all\": {}}],\n \"filter\": [{\"terms\": {\"_id\": candidate_doc_ids}}]\n }}\n\n if self.excluded_meta_data:\n body[\"_source\"] = {\"excludes\": self.excluded_meta_data}\n\n logger.debug(f\"Retriever query: {body}\")\n result = self.client.search(index=self.index, body=body)[\"hits\"][\"hits\"]\n\n documents = [self._convert_es_hit_to_document(hit, score_adjustment=-1) for hit in result]\n return documents\n\n def _convert_es_hit_to_document(self, hit, score_adjustment=0) -> Document:\n # We put all additional data of the doc into meta_data and return it in the API\n meta_data = {k:v for k,v in hit[\"_source\"].items() if k not in (self.text_field, self.external_source_id_field)}\n meta_data[\"name\"] = meta_data.pop(self.name_field, None)\n\n document = Document(\n id=hit[\"_id\"],\n text=hit[\"_source\"][self.text_field],\n external_source_id=hit[\"_source\"].get(self.external_source_id_field),\n meta=meta_data,\n query_score=hit[\"_score\"] + score_adjustment if hit[\"_score\"] else None,\n )\n return document\n", "path": "haystack/database/elasticsearch.py"}]} | 2,782 | 108 |
gh_patches_debug_19 | rasdani/github-patches | git_diff | pwndbg__pwndbg-381 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Broken `entry` command
### Description
The `entry` command pass arguments differently then the `run` command.
### Steps to reproduce
```
[dc@dc:pwndbg|dev *$%]$ gdb python
Loaded 113 commands. Type pwndbg [filter] for a list.
Reading symbols from python...(no debugging symbols found)...done.
pwndbg> set exception-verbose on
Set whether to print a full stacktracefor exceptions raised in Pwndbg commands to True
pwndbg> run -c "print(1); print(2)"
Starting program: /usr/bin/python -c "print(1); print(2)"
[Thread debugging using libthread_db enabled]
Using host libthread_db library "/usr/lib/libthread_db.so.1".
1
2
[Inferior 1 (process 20590) exited normally]
pwndbg> entry -c "print(1); print(2)"
('-c', 'print(1); print(2)')
Running '%s' run -c print(1); print(2)
/bin/bash: -c: line 0: syntax error near unexpected token `('
/bin/bash: -c: line 0: `exec /usr/bin/python -c print(1); print(2)'
Traceback (most recent call last):
File "/home/dc/installed/pwndbg/pwndbg/commands/__init__.py", line 100, in __call__
return self.function(*args, **kwargs)
File "/home/dc/installed/pwndbg/pwndbg/commands/__init__.py", line 181, in _OnlyWithFile
return function(*a, **kw)
File "/home/dc/installed/pwndbg/pwndbg/commands/start.py", line 72, in entry
gdb.execute(run, from_tty=False)
gdb.error: During startup program exited with code 1.
If that is an issue, you can report it on https://github.com/pwndbg/pwndbg/issues
(Please don't forget to search if it hasn't been reported before)
PS: Pull requests are welcome
```
### My version
```
pwndbg> version
Gdb: GNU gdb (GDB) 8.0.1
Python: 3.6.3 (default, Oct 24 2017, 14:48:20) [GCC 7.2.0]
Pwndbg: 1.0.0 build: 5811010
```
</issue>
<code>
[start of pwndbg/prompt.py]
1 #!/usr/bin/env python
2 # -*- coding: utf-8 -*-
3 from __future__ import absolute_import
4 from __future__ import division
5 from __future__ import print_function
6 from __future__ import unicode_literals
7
8 import gdb
9
10 import pwndbg.color as C
11 import pwndbg.events
12 import pwndbg.gdbutils
13 import pwndbg.memoize
14
15 funcs_list_str = ', '.join(C.purple('$' + f.name) for f in pwndbg.gdbutils.functions.functions)
16
17 hint_lines = (
18 'loaded %i commands. Type %s for a list.' % (len(pwndbg.commands.commands), C.purple('pwndbg [filter]')),
19 'created %s gdb functions (can be used with print/break)' % funcs_list_str
20 )
21
22 for line in hint_lines:
23 print(C.light_red(pwndbg.color.bold('pwndbg: ') + line))
24
25 cur = (gdb.selected_inferior(), gdb.selected_thread())
26
27
28 def prompt_hook(*a):
29 global cur
30 new = (gdb.selected_inferior(), gdb.selected_thread())
31
32 if cur != new:
33 pwndbg.events.after_reload(start=False)
34 cur = new
35
36 if pwndbg.proc.alive and pwndbg.proc.thread_is_stopped:
37 prompt_hook_on_stop(*a)
38
39
40 @pwndbg.memoize.reset_on_stop
41 def prompt_hook_on_stop(*a):
42 pwndbg.commands.context.context()
43
44
45
46 gdb.prompt_hook = prompt_hook
47
[end of pwndbg/prompt.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pwndbg/prompt.py b/pwndbg/prompt.py
--- a/pwndbg/prompt.py
+++ b/pwndbg/prompt.py
@@ -43,4 +43,5 @@
+
gdb.prompt_hook = prompt_hook
| {"golden_diff": "diff --git a/pwndbg/prompt.py b/pwndbg/prompt.py\n--- a/pwndbg/prompt.py\n+++ b/pwndbg/prompt.py\n@@ -43,4 +43,5 @@\n \n \n \n+\n gdb.prompt_hook = prompt_hook\n", "issue": "Broken `entry` command\n### Description\r\n\r\nThe `entry` command pass arguments differently then the `run` command.\r\n\r\n### Steps to reproduce\r\n\r\n```\r\n[dc@dc:pwndbg|dev *$%]$ gdb python\r\nLoaded 113 commands. Type pwndbg [filter] for a list.\r\nReading symbols from python...(no debugging symbols found)...done.\r\npwndbg> set exception-verbose on\r\nSet whether to print a full stacktracefor exceptions raised in Pwndbg commands to True\r\npwndbg> run -c \"print(1); print(2)\"\r\nStarting program: /usr/bin/python -c \"print(1); print(2)\"\r\n[Thread debugging using libthread_db enabled]\r\nUsing host libthread_db library \"/usr/lib/libthread_db.so.1\".\r\n1\r\n2\r\n[Inferior 1 (process 20590) exited normally]\r\npwndbg> entry -c \"print(1); print(2)\"\r\n('-c', 'print(1); print(2)')\r\nRunning '%s' run -c print(1); print(2)\r\n/bin/bash: -c: line 0: syntax error near unexpected token `('\r\n/bin/bash: -c: line 0: `exec /usr/bin/python -c print(1); print(2)'\r\nTraceback (most recent call last):\r\n File \"/home/dc/installed/pwndbg/pwndbg/commands/__init__.py\", line 100, in __call__\r\n return self.function(*args, **kwargs)\r\n File \"/home/dc/installed/pwndbg/pwndbg/commands/__init__.py\", line 181, in _OnlyWithFile\r\n return function(*a, **kw)\r\n File \"/home/dc/installed/pwndbg/pwndbg/commands/start.py\", line 72, in entry\r\n gdb.execute(run, from_tty=False)\r\ngdb.error: During startup program exited with code 1.\r\n\r\nIf that is an issue, you can report it on https://github.com/pwndbg/pwndbg/issues\r\n(Please don't forget to search if it hasn't been reported before)\r\nPS: Pull requests are welcome\r\n```\r\n\r\n### My version\r\n\r\n```\r\npwndbg> version\r\nGdb: GNU gdb (GDB) 8.0.1\r\nPython: 3.6.3 (default, Oct 24 2017, 14:48:20) [GCC 7.2.0]\r\nPwndbg: 1.0.0 build: 5811010\r\n```\n", "before_files": [{"content": "#!/usr/bin/env python\n# -*- coding: utf-8 -*-\nfrom __future__ import absolute_import\nfrom __future__ import division\nfrom __future__ import print_function\nfrom __future__ import unicode_literals\n\nimport gdb\n\nimport pwndbg.color as C\nimport pwndbg.events\nimport pwndbg.gdbutils\nimport pwndbg.memoize\n\nfuncs_list_str = ', '.join(C.purple('$' + f.name) for f in pwndbg.gdbutils.functions.functions)\n\nhint_lines = (\n 'loaded %i commands. Type %s for a list.' % (len(pwndbg.commands.commands), C.purple('pwndbg [filter]')),\n 'created %s gdb functions (can be used with print/break)' % funcs_list_str\n)\n\nfor line in hint_lines:\n print(C.light_red(pwndbg.color.bold('pwndbg: ') + line))\n\ncur = (gdb.selected_inferior(), gdb.selected_thread())\n\n\ndef prompt_hook(*a):\n global cur\n new = (gdb.selected_inferior(), gdb.selected_thread())\n\n if cur != new:\n pwndbg.events.after_reload(start=False)\n cur = new\n\n if pwndbg.proc.alive and pwndbg.proc.thread_is_stopped:\n prompt_hook_on_stop(*a)\n\n\[email protected]_on_stop\ndef prompt_hook_on_stop(*a):\n pwndbg.commands.context.context()\n\n\n\ngdb.prompt_hook = prompt_hook\n", "path": "pwndbg/prompt.py"}]} | 1,504 | 58 |
gh_patches_debug_43803 | rasdani/github-patches | git_diff | Flexget__Flexget-2961 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Pirate Bay Plugin: Error searching with piratebay: Expecting value: line 1 column 1 (char 0)
When searching with the Pirate Bay plugin for Movies I get an error every time. I didn't change anything in my Config. It used to search just fine. Been getting this error since Version 3.1.75 or .76.
#### Config:
```yaml
download-movies:
priority: 4
imdb_lookup: yes # can also use imdb_lookup or tmdb_lookup
discover:
what:
- movie_list: watchlist
from:
- piratebay:
sort_by: seeds
category: video
url: https://www1.thepiratebay3.to/
- rarbg:
category: [48, 44, 14, 45, 17]
sorted_by: seeders
interval: 30 minutes
```
#### Log:
<details>
<summary>(click to expand)</summary>
```
2020-10-18 13:42:42 VERBOSE discover download-movies Searching for `The Net (2016)` with plugin `piratebay` (1 of 3)
2020-10-18 13:42:43 ERROR discover download-movies Error searching with piratebay: Expecting value: line 1 column 1 (char 0)
2020-10-18 13:42:43 VERBOSE discover download-movies Searching for `The Net (2016)` with plugin `rarbg` (1 of 3)
2020-10-18 13:42:46 VERBOSE discover download-movies No search results for `The Net (2016)`
2020-10-18 13:42:46 VERBOSE discover download-movies Searching for `Angelo (2019)` with plugin `piratebay` (2 of 3)
2020-10-18 13:42:46 ERROR discover download-movies Error searching with piratebay: Expecting value: line 1 column 1 (char 0)
2020-10-18 13:42:46 VERBOSE discover download-movies Searching for `Angelo (2019)` with plugin `rarbg` (2 of 3)
```
</details>
### Additional information:
- FlexGet version: 3.1.77
- Python version:
- Installation method:
- Using daemon (yes/no): yes
- OS and version: DietPi rasperryPi Debian
</issue>
<code>
[start of flexget/components/sites/sites/piratebay.py]
1 import re
2 from urllib.parse import urlencode, urlparse
3
4 from loguru import logger
5
6 from flexget import plugin
7 from flexget.components.sites.urlrewriting import UrlRewritingError
8 from flexget.components.sites.utils import normalize_unicode, torrent_availability
9 from flexget.entry import Entry
10 from flexget.event import event
11
12 logger = logger.bind(name='piratebay')
13
14 URL = 'https://apibay.org' # for TOR: http://piratebayztemzmv.onion
15
16 CATEGORIES = {
17 'all': 0,
18 'audio': 100,
19 'music': 101,
20 'video': 200,
21 'movies': 201,
22 'tv': 205,
23 'highres movies': 207,
24 'highres tv': 208,
25 'comics': 602,
26 }
27
28 # try to maintain compatibility with old config
29 SORT = {
30 'default': 'torrent_availability',
31 'date': 'torrent_timestamp',
32 'size': 'content_size',
33 'seeds': 'torrent_seeds',
34 'leechers': 'torrent_leeches',
35 }
36
37 # default trackers for magnet links
38 TRACKERS = [
39 'udp://tracker.coppersurfer.tk:6969/announce',
40 'udp://9.rarbg.to:2920/announce',
41 'udp://tracker.opentrackr.org:1337',
42 'udp://tracker.internetwarriors.net:1337/announce',
43 'udp://tracker.leechers-paradise.org:6969/announce',
44 'udp://tracker.coppersurfer.tk:6969/announce',
45 'udp://tracker.pirateparty.gr:6969/announce',
46 'udp://tracker.cyberia.is:6969/announce',
47 ]
48
49
50 class UrlRewritePirateBay:
51 """PirateBay urlrewriter."""
52
53 schema = {
54 'oneOf': [
55 {'type': 'boolean'},
56 {
57 'type': 'object',
58 'properties': {
59 'url': {'type': 'string', 'default': URL, 'format': 'url'},
60 'category': {
61 'oneOf': [
62 {'type': 'string', 'enum': list(CATEGORIES)},
63 {'type': 'integer'},
64 ]
65 },
66 'sort_by': {'type': 'string', 'enum': list(SORT)},
67 'sort_reverse': {'type': 'boolean'},
68 },
69 'additionalProperties': False,
70 },
71 ]
72 }
73
74 url = None
75
76 def __init__(self):
77 self.set_urls(URL)
78
79 def on_task_start(self, task, config=None):
80 if not isinstance(config, dict):
81 config = {}
82 self.set_urls(config.get('url', URL))
83
84 def set_urls(self, url):
85 url = url.rstrip('/')
86 if self.url != url:
87 self.url = url
88 parsed_url = urlparse(url)
89 escaped_url_scheme = re.escape(parsed_url.scheme)
90 escaped_url_netloc = re.escape(parsed_url.netloc)
91 # most api mirrors share the same domain with frontend, except thepiratebay.org which uses apibay.org
92 # some api mirrors might contain path, for ex https://pirateproxy.surf/api?url=/q.php?q=ubuntu&cat=0
93 # valid URLs are https://piratebay.org/description.php?id=\d+ and https://apibay.org/description.php?id=\d+
94 self.url_match = re.compile(
95 fr'^{escaped_url_scheme}://(?:thepiratebay\.org(?:\:\d+)?|{escaped_url_netloc})/description\.php\?id=(\d+)$'
96 )
97 self.url_search = re.compile(
98 fr'^(?:https?://thepiratebay\.org(?:\:\d+)?|{escaped_url_scheme}://{escaped_url_netloc})/search\.php\?q=.*$'
99 )
100
101 # urlrewriter API
102 def url_rewritable(self, task, entry):
103 url = entry['url']
104 if url.endswith('.torrent'):
105 return False
106 return any((self.url_match.match(url), self.url_search.match(url)))
107
108 # urlrewriter API
109 def url_rewrite(self, task, entry):
110 if 'url' not in entry:
111 logger.error("Didn't actually get a URL...")
112 else:
113 logger.debug('Got the URL: {}', entry['url'])
114 if self.url_search.match(entry['url']):
115 # use search
116 results = self.search(task, entry)
117 if not results:
118 raise UrlRewritingError("No search results found")
119 # TODO: Close matching was taken out of search methods, this may need to be fixed to be more picky
120 entry['url'] = results[0]['url']
121 else:
122 torrent_id = self.url_match.match(entry['url']).group(1)
123 url = f"{self.url}/t.php?id={torrent_id}"
124 logger.debug('Getting info for torrent ID {}', torrent_id)
125 json_result = task.requests.get(url).json()
126 if json_result['id'] == '0':
127 raise UrlRewritingError(f"Torrent with ID {torrent_id} does not exist.")
128 entry['url'] = self.info_hash_to_magnet(json_result['info_hash'], json_result['name'])
129
130 @plugin.internet(logger)
131 def search(self, task, entry, config=None):
132 """
133 Search for name from piratebay.
134 """
135 if not isinstance(config, dict):
136 config = {}
137 self.set_urls(config.get('url', URL))
138 sort = SORT.get(config.get('sort_by', 'default'))
139 sort_reverse = bool(config.get('sort_reverse', 'True'))
140 if isinstance(config.get('category'), int):
141 category = config['category']
142 else:
143 category = CATEGORIES.get(config.get('category', 'all'))
144
145 entries = set()
146 for search_string in entry.get('search_strings', [entry['title']]):
147 # query = normalize_unicode(search_string)
148 params = {'q': search_string, 'cat': category}
149 url = f"{self.url}/q.php"
150 json_results = task.requests.get(url, params=params).json()
151 if not json_results:
152 raise plugin.PluginError("Error while searching piratebay for %s.", search_string)
153 for result in json_results:
154 if result['id'] == '0':
155 # JSON when no results found: [{ "id":"0", "name":"No results returned", ... }]
156 break
157 entry = self.json_to_entry(result)
158 entries.add(entry)
159
160 return sorted(entries, reverse=sort_reverse, key=lambda x: x.get(sort))
161
162 # convert an info_hash string to a magnet uri
163 @staticmethod
164 def info_hash_to_magnet(info_hash: str, name: str) -> str:
165 magnet = {'xt': f"urn:btih:{info_hash}", 'dn': name, 'tr': TRACKERS}
166 magnet_qs = urlencode(magnet, doseq=True, safe=':')
167 magnet_uri = f"magnet:?{magnet_qs}"
168 return magnet_uri
169
170 # convert a single json result to an Entry
171 def json_to_entry(self, json_result: dict) -> Entry:
172 entry = Entry()
173 entry['title'] = json_result['name']
174 entry['torrent_seeds'] = int(json_result['seeders'])
175 entry['torrent_leeches'] = int(json_result['leechers'])
176 entry['torrent_timestamp'] = int(json_result['added']) # custom field for sorting by date
177 entry['torrent_availability'] = torrent_availability(
178 entry['torrent_seeds'], entry['torrent_leeches']
179 )
180 entry['content_size'] = int(
181 round(int(json_result['size']) / (1024 * 1024))
182 ) # content_size is in MiB
183 entry['torrent_info_hash'] = json_result['info_hash']
184 entry['url'] = self.info_hash_to_magnet(json_result['info_hash'], json_result['name'])
185 return entry
186
187
188 @event('plugin.register')
189 def register_plugin():
190 plugin.register(
191 UrlRewritePirateBay, 'piratebay', interfaces=['urlrewriter', 'search', 'task'], api_ver=2
192 )
193
[end of flexget/components/sites/sites/piratebay.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/flexget/components/sites/sites/piratebay.py b/flexget/components/sites/sites/piratebay.py
--- a/flexget/components/sites/sites/piratebay.py
+++ b/flexget/components/sites/sites/piratebay.py
@@ -1,11 +1,12 @@
import re
from urllib.parse import urlencode, urlparse
+from json import JSONDecodeError
from loguru import logger
from flexget import plugin
from flexget.components.sites.urlrewriting import UrlRewritingError
-from flexget.components.sites.utils import normalize_unicode, torrent_availability
+from flexget.components.sites.utils import torrent_availability
from flexget.entry import Entry
from flexget.event import event
@@ -108,23 +109,23 @@
# urlrewriter API
def url_rewrite(self, task, entry):
if 'url' not in entry:
- logger.error("Didn't actually get a URL...")
+ logger.error('Didn\'t actually get a URL...')
else:
logger.debug('Got the URL: {}', entry['url'])
if self.url_search.match(entry['url']):
# use search
results = self.search(task, entry)
if not results:
- raise UrlRewritingError("No search results found")
+ raise UrlRewritingError('No search results found')
# TODO: Close matching was taken out of search methods, this may need to be fixed to be more picky
entry['url'] = results[0]['url']
else:
torrent_id = self.url_match.match(entry['url']).group(1)
- url = f"{self.url}/t.php?id={torrent_id}"
+ url = f'{self.url}/t.php?id={torrent_id}'
logger.debug('Getting info for torrent ID {}', torrent_id)
json_result = task.requests.get(url).json()
if json_result['id'] == '0':
- raise UrlRewritingError(f"Torrent with ID {torrent_id} does not exist.")
+ raise UrlRewritingError(f'Torrent with ID {torrent_id} does not exist.')
entry['url'] = self.info_hash_to_magnet(json_result['info_hash'], json_result['name'])
@plugin.internet(logger)
@@ -146,10 +147,16 @@
for search_string in entry.get('search_strings', [entry['title']]):
# query = normalize_unicode(search_string)
params = {'q': search_string, 'cat': category}
- url = f"{self.url}/q.php"
- json_results = task.requests.get(url, params=params).json()
+ url = f'{self.url}/q.php'
+ try:
+ json_results = task.requests.get(url, params=params).json()
+ except JSONDecodeError as e:
+ raise plugin.PluginError(
+ f'Error while searching piratebay for {search_string}, invalid json response',
+ )
+
if not json_results:
- raise plugin.PluginError("Error while searching piratebay for %s.", search_string)
+ raise plugin.PluginError(f'Error while searching piratebay for {search_string}.')
for result in json_results:
if result['id'] == '0':
# JSON when no results found: [{ "id":"0", "name":"No results returned", ... }]
@@ -162,9 +169,9 @@
# convert an info_hash string to a magnet uri
@staticmethod
def info_hash_to_magnet(info_hash: str, name: str) -> str:
- magnet = {'xt': f"urn:btih:{info_hash}", 'dn': name, 'tr': TRACKERS}
+ magnet = {'xt': f'urn:btih:{info_hash}', 'dn': name, 'tr': TRACKERS}
magnet_qs = urlencode(magnet, doseq=True, safe=':')
- magnet_uri = f"magnet:?{magnet_qs}"
+ magnet_uri = f'magnet:?{magnet_qs}'
return magnet_uri
# convert a single json result to an Entry
| {"golden_diff": "diff --git a/flexget/components/sites/sites/piratebay.py b/flexget/components/sites/sites/piratebay.py\n--- a/flexget/components/sites/sites/piratebay.py\n+++ b/flexget/components/sites/sites/piratebay.py\n@@ -1,11 +1,12 @@\n import re\n from urllib.parse import urlencode, urlparse\n+from json import JSONDecodeError\n \n from loguru import logger\n \n from flexget import plugin\n from flexget.components.sites.urlrewriting import UrlRewritingError\n-from flexget.components.sites.utils import normalize_unicode, torrent_availability\n+from flexget.components.sites.utils import torrent_availability\n from flexget.entry import Entry\n from flexget.event import event\n \n@@ -108,23 +109,23 @@\n # urlrewriter API\n def url_rewrite(self, task, entry):\n if 'url' not in entry:\n- logger.error(\"Didn't actually get a URL...\")\n+ logger.error('Didn\\'t actually get a URL...')\n else:\n logger.debug('Got the URL: {}', entry['url'])\n if self.url_search.match(entry['url']):\n # use search\n results = self.search(task, entry)\n if not results:\n- raise UrlRewritingError(\"No search results found\")\n+ raise UrlRewritingError('No search results found')\n # TODO: Close matching was taken out of search methods, this may need to be fixed to be more picky\n entry['url'] = results[0]['url']\n else:\n torrent_id = self.url_match.match(entry['url']).group(1)\n- url = f\"{self.url}/t.php?id={torrent_id}\"\n+ url = f'{self.url}/t.php?id={torrent_id}'\n logger.debug('Getting info for torrent ID {}', torrent_id)\n json_result = task.requests.get(url).json()\n if json_result['id'] == '0':\n- raise UrlRewritingError(f\"Torrent with ID {torrent_id} does not exist.\")\n+ raise UrlRewritingError(f'Torrent with ID {torrent_id} does not exist.')\n entry['url'] = self.info_hash_to_magnet(json_result['info_hash'], json_result['name'])\n \n @plugin.internet(logger)\n@@ -146,10 +147,16 @@\n for search_string in entry.get('search_strings', [entry['title']]):\n # query = normalize_unicode(search_string)\n params = {'q': search_string, 'cat': category}\n- url = f\"{self.url}/q.php\"\n- json_results = task.requests.get(url, params=params).json()\n+ url = f'{self.url}/q.php'\n+ try:\n+ json_results = task.requests.get(url, params=params).json()\n+ except JSONDecodeError as e:\n+ raise plugin.PluginError(\n+ f'Error while searching piratebay for {search_string}, invalid json response',\n+ )\n+\n if not json_results:\n- raise plugin.PluginError(\"Error while searching piratebay for %s.\", search_string)\n+ raise plugin.PluginError(f'Error while searching piratebay for {search_string}.')\n for result in json_results:\n if result['id'] == '0':\n # JSON when no results found: [{ \"id\":\"0\", \"name\":\"No results returned\", ... }]\n@@ -162,9 +169,9 @@\n # convert an info_hash string to a magnet uri\n @staticmethod\n def info_hash_to_magnet(info_hash: str, name: str) -> str:\n- magnet = {'xt': f\"urn:btih:{info_hash}\", 'dn': name, 'tr': TRACKERS}\n+ magnet = {'xt': f'urn:btih:{info_hash}', 'dn': name, 'tr': TRACKERS}\n magnet_qs = urlencode(magnet, doseq=True, safe=':')\n- magnet_uri = f\"magnet:?{magnet_qs}\"\n+ magnet_uri = f'magnet:?{magnet_qs}'\n return magnet_uri\n \n # convert a single json result to an Entry\n", "issue": "Pirate Bay Plugin: Error searching with piratebay: Expecting value: line 1 column 1 (char 0)\nWhen searching with the Pirate Bay plugin for Movies I get an error every time. I didn't change anything in my Config. It used to search just fine. Been getting this error since Version 3.1.75 or .76. \r\n\r\n\r\n#### Config:\r\n```yaml\r\ndownload-movies: \r\n priority: 4 \r\n imdb_lookup: yes # can also use imdb_lookup or tmdb_lookup\r\n discover:\r\n what:\r\n - movie_list: watchlist\r\n from:\r\n - piratebay:\r\n sort_by: seeds\r\n category: video\r\n url: https://www1.thepiratebay3.to/\r\n - rarbg:\r\n category: [48, 44, 14, 45, 17]\r\n sorted_by: seeders\r\n interval: 30 minutes \r\n```\r\n \r\n#### Log:\r\n<details>\r\n <summary>(click to expand)</summary>\r\n\r\n```\r\n2020-10-18 13:42:42 VERBOSE discover download-movies Searching for `The Net (2016)` with plugin `piratebay` (1 of 3)\r\n2020-10-18 13:42:43 ERROR discover download-movies Error searching with piratebay: Expecting value: line 1 column 1 (char 0)\r\n2020-10-18 13:42:43 VERBOSE discover download-movies Searching for `The Net (2016)` with plugin `rarbg` (1 of 3)\r\n2020-10-18 13:42:46 VERBOSE discover download-movies No search results for `The Net (2016)`\r\n2020-10-18 13:42:46 VERBOSE discover download-movies Searching for `Angelo (2019)` with plugin `piratebay` (2 of 3)\r\n2020-10-18 13:42:46 ERROR discover download-movies Error searching with piratebay: Expecting value: line 1 column 1 (char 0)\r\n2020-10-18 13:42:46 VERBOSE discover download-movies Searching for `Angelo (2019)` with plugin `rarbg` (2 of 3)\r\n```\r\n</details>\r\n\r\n### Additional information:\r\n\r\n- FlexGet version: 3.1.77\r\n- Python version:\r\n- Installation method: \r\n- Using daemon (yes/no): yes\r\n- OS and version: DietPi rasperryPi Debian\n", "before_files": [{"content": "import re\nfrom urllib.parse import urlencode, urlparse\n\nfrom loguru import logger\n\nfrom flexget import plugin\nfrom flexget.components.sites.urlrewriting import UrlRewritingError\nfrom flexget.components.sites.utils import normalize_unicode, torrent_availability\nfrom flexget.entry import Entry\nfrom flexget.event import event\n\nlogger = logger.bind(name='piratebay')\n\nURL = 'https://apibay.org' # for TOR: http://piratebayztemzmv.onion\n\nCATEGORIES = {\n 'all': 0,\n 'audio': 100,\n 'music': 101,\n 'video': 200,\n 'movies': 201,\n 'tv': 205,\n 'highres movies': 207,\n 'highres tv': 208,\n 'comics': 602,\n}\n\n# try to maintain compatibility with old config\nSORT = {\n 'default': 'torrent_availability',\n 'date': 'torrent_timestamp',\n 'size': 'content_size',\n 'seeds': 'torrent_seeds',\n 'leechers': 'torrent_leeches',\n}\n\n# default trackers for magnet links\nTRACKERS = [\n 'udp://tracker.coppersurfer.tk:6969/announce',\n 'udp://9.rarbg.to:2920/announce',\n 'udp://tracker.opentrackr.org:1337',\n 'udp://tracker.internetwarriors.net:1337/announce',\n 'udp://tracker.leechers-paradise.org:6969/announce',\n 'udp://tracker.coppersurfer.tk:6969/announce',\n 'udp://tracker.pirateparty.gr:6969/announce',\n 'udp://tracker.cyberia.is:6969/announce',\n]\n\n\nclass UrlRewritePirateBay:\n \"\"\"PirateBay urlrewriter.\"\"\"\n\n schema = {\n 'oneOf': [\n {'type': 'boolean'},\n {\n 'type': 'object',\n 'properties': {\n 'url': {'type': 'string', 'default': URL, 'format': 'url'},\n 'category': {\n 'oneOf': [\n {'type': 'string', 'enum': list(CATEGORIES)},\n {'type': 'integer'},\n ]\n },\n 'sort_by': {'type': 'string', 'enum': list(SORT)},\n 'sort_reverse': {'type': 'boolean'},\n },\n 'additionalProperties': False,\n },\n ]\n }\n\n url = None\n\n def __init__(self):\n self.set_urls(URL)\n\n def on_task_start(self, task, config=None):\n if not isinstance(config, dict):\n config = {}\n self.set_urls(config.get('url', URL))\n\n def set_urls(self, url):\n url = url.rstrip('/')\n if self.url != url:\n self.url = url\n parsed_url = urlparse(url)\n escaped_url_scheme = re.escape(parsed_url.scheme)\n escaped_url_netloc = re.escape(parsed_url.netloc)\n # most api mirrors share the same domain with frontend, except thepiratebay.org which uses apibay.org\n # some api mirrors might contain path, for ex https://pirateproxy.surf/api?url=/q.php?q=ubuntu&cat=0\n # valid URLs are https://piratebay.org/description.php?id=\\d+ and https://apibay.org/description.php?id=\\d+\n self.url_match = re.compile(\n fr'^{escaped_url_scheme}://(?:thepiratebay\\.org(?:\\:\\d+)?|{escaped_url_netloc})/description\\.php\\?id=(\\d+)$'\n )\n self.url_search = re.compile(\n fr'^(?:https?://thepiratebay\\.org(?:\\:\\d+)?|{escaped_url_scheme}://{escaped_url_netloc})/search\\.php\\?q=.*$'\n )\n\n # urlrewriter API\n def url_rewritable(self, task, entry):\n url = entry['url']\n if url.endswith('.torrent'):\n return False\n return any((self.url_match.match(url), self.url_search.match(url)))\n\n # urlrewriter API\n def url_rewrite(self, task, entry):\n if 'url' not in entry:\n logger.error(\"Didn't actually get a URL...\")\n else:\n logger.debug('Got the URL: {}', entry['url'])\n if self.url_search.match(entry['url']):\n # use search\n results = self.search(task, entry)\n if not results:\n raise UrlRewritingError(\"No search results found\")\n # TODO: Close matching was taken out of search methods, this may need to be fixed to be more picky\n entry['url'] = results[0]['url']\n else:\n torrent_id = self.url_match.match(entry['url']).group(1)\n url = f\"{self.url}/t.php?id={torrent_id}\"\n logger.debug('Getting info for torrent ID {}', torrent_id)\n json_result = task.requests.get(url).json()\n if json_result['id'] == '0':\n raise UrlRewritingError(f\"Torrent with ID {torrent_id} does not exist.\")\n entry['url'] = self.info_hash_to_magnet(json_result['info_hash'], json_result['name'])\n\n @plugin.internet(logger)\n def search(self, task, entry, config=None):\n \"\"\"\n Search for name from piratebay.\n \"\"\"\n if not isinstance(config, dict):\n config = {}\n self.set_urls(config.get('url', URL))\n sort = SORT.get(config.get('sort_by', 'default'))\n sort_reverse = bool(config.get('sort_reverse', 'True'))\n if isinstance(config.get('category'), int):\n category = config['category']\n else:\n category = CATEGORIES.get(config.get('category', 'all'))\n\n entries = set()\n for search_string in entry.get('search_strings', [entry['title']]):\n # query = normalize_unicode(search_string)\n params = {'q': search_string, 'cat': category}\n url = f\"{self.url}/q.php\"\n json_results = task.requests.get(url, params=params).json()\n if not json_results:\n raise plugin.PluginError(\"Error while searching piratebay for %s.\", search_string)\n for result in json_results:\n if result['id'] == '0':\n # JSON when no results found: [{ \"id\":\"0\", \"name\":\"No results returned\", ... }]\n break\n entry = self.json_to_entry(result)\n entries.add(entry)\n\n return sorted(entries, reverse=sort_reverse, key=lambda x: x.get(sort))\n\n # convert an info_hash string to a magnet uri\n @staticmethod\n def info_hash_to_magnet(info_hash: str, name: str) -> str:\n magnet = {'xt': f\"urn:btih:{info_hash}\", 'dn': name, 'tr': TRACKERS}\n magnet_qs = urlencode(magnet, doseq=True, safe=':')\n magnet_uri = f\"magnet:?{magnet_qs}\"\n return magnet_uri\n\n # convert a single json result to an Entry\n def json_to_entry(self, json_result: dict) -> Entry:\n entry = Entry()\n entry['title'] = json_result['name']\n entry['torrent_seeds'] = int(json_result['seeders'])\n entry['torrent_leeches'] = int(json_result['leechers'])\n entry['torrent_timestamp'] = int(json_result['added']) # custom field for sorting by date\n entry['torrent_availability'] = torrent_availability(\n entry['torrent_seeds'], entry['torrent_leeches']\n )\n entry['content_size'] = int(\n round(int(json_result['size']) / (1024 * 1024))\n ) # content_size is in MiB\n entry['torrent_info_hash'] = json_result['info_hash']\n entry['url'] = self.info_hash_to_magnet(json_result['info_hash'], json_result['name'])\n return entry\n\n\n@event('plugin.register')\ndef register_plugin():\n plugin.register(\n UrlRewritePirateBay, 'piratebay', interfaces=['urlrewriter', 'search', 'task'], api_ver=2\n )\n", "path": "flexget/components/sites/sites/piratebay.py"}]} | 3,429 | 886 |
gh_patches_debug_19611 | rasdani/github-patches | git_diff | pytorch__vision-2321 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Failed to download CelebA in Colab
## 🐛 Bug
It fails to download the following files **img_align_celeba.zip**
## To Reproduce
Steps to reproduce the behavior:
1. `from torchvision import datasets`
`trainset = datasets.CelebA(root='./data/', split='train', target_type="attr", transform=transform, download=True)`
Error:
```
Traceback (most recent call last):
File "transfer_learning.py", line 123, in <module>
trainset = datasets.CelebA(root='./data/', split='train', transform=transform, download=True)
File "/usr/local/lib/python3.6/dist-packages/torchvision/datasets/celeba.py", line 66, in __init__
self.download()
File "/usr/local/lib/python3.6/dist-packages/torchvision/datasets/celeba.py", line 120, in download
with zipfile.ZipFile(os.path.join(self.root, self.base_folder, "img_align_celeba.zip"), "r") as f:
File "/usr/lib/python3.6/zipfile.py", line 1131, in __init__
self._RealGetContents()
File "/usr/lib/python3.6/zipfile.py", line 1198, in _RealGetContents
raise BadZipFile("File is not a zip file")
zipfile.BadZipFile: File is not a zip file
```
## Expected behavior
## Environment
```
PyTorch version: 1.5.0+cu101
Is debug build: No
CUDA used to build PyTorch: 10.1
OS: Ubuntu 18.04.3 LTS
GCC version: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0
CMake version: version 3.12.0
Python version: 3.6
Is CUDA available: No
CUDA runtime version: 10.1.243
GPU models and configuration: Could not collect
Nvidia driver version: Could not collect
cuDNN version: /usr/lib/x86_64-linux-gnu/libcudnn.so.7.6.5
Versions of relevant libraries:
[pip3] numpy==1.18.5
[pip3] torch==1.5.0+cu101
[pip3] torchsummary==1.5.1
[pip3] torchtext==0.3.1
[pip3] torchvision==0.6.0+cu101
[conda] Could not collect
```
## Additional context
<!-- Add any other context about the problem here. -->
</issue>
<code>
[start of torchvision/datasets/utils.py]
1 import os
2 import os.path
3 import hashlib
4 import gzip
5 import errno
6 import tarfile
7 import zipfile
8
9 import torch
10 from torch.utils.model_zoo import tqdm
11
12
13 def gen_bar_updater():
14 pbar = tqdm(total=None)
15
16 def bar_update(count, block_size, total_size):
17 if pbar.total is None and total_size:
18 pbar.total = total_size
19 progress_bytes = count * block_size
20 pbar.update(progress_bytes - pbar.n)
21
22 return bar_update
23
24
25 def calculate_md5(fpath, chunk_size=1024 * 1024):
26 md5 = hashlib.md5()
27 with open(fpath, 'rb') as f:
28 for chunk in iter(lambda: f.read(chunk_size), b''):
29 md5.update(chunk)
30 return md5.hexdigest()
31
32
33 def check_md5(fpath, md5, **kwargs):
34 return md5 == calculate_md5(fpath, **kwargs)
35
36
37 def check_integrity(fpath, md5=None):
38 if not os.path.isfile(fpath):
39 return False
40 if md5 is None:
41 return True
42 return check_md5(fpath, md5)
43
44
45 def download_url(url, root, filename=None, md5=None):
46 """Download a file from a url and place it in root.
47
48 Args:
49 url (str): URL to download file from
50 root (str): Directory to place downloaded file in
51 filename (str, optional): Name to save the file under. If None, use the basename of the URL
52 md5 (str, optional): MD5 checksum of the download. If None, do not check
53 """
54 import urllib
55
56 root = os.path.expanduser(root)
57 if not filename:
58 filename = os.path.basename(url)
59 fpath = os.path.join(root, filename)
60
61 os.makedirs(root, exist_ok=True)
62
63 # check if file is already present locally
64 if check_integrity(fpath, md5):
65 print('Using downloaded and verified file: ' + fpath)
66 else: # download the file
67 try:
68 print('Downloading ' + url + ' to ' + fpath)
69 urllib.request.urlretrieve(
70 url, fpath,
71 reporthook=gen_bar_updater()
72 )
73 except (urllib.error.URLError, IOError) as e:
74 if url[:5] == 'https':
75 url = url.replace('https:', 'http:')
76 print('Failed download. Trying https -> http instead.'
77 ' Downloading ' + url + ' to ' + fpath)
78 urllib.request.urlretrieve(
79 url, fpath,
80 reporthook=gen_bar_updater()
81 )
82 else:
83 raise e
84 # check integrity of downloaded file
85 if not check_integrity(fpath, md5):
86 raise RuntimeError("File not found or corrupted.")
87
88
89 def list_dir(root, prefix=False):
90 """List all directories at a given root
91
92 Args:
93 root (str): Path to directory whose folders need to be listed
94 prefix (bool, optional): If true, prepends the path to each result, otherwise
95 only returns the name of the directories found
96 """
97 root = os.path.expanduser(root)
98 directories = [p for p in os.listdir(root) if os.path.isdir(os.path.join(root, p))]
99 if prefix is True:
100 directories = [os.path.join(root, d) for d in directories]
101 return directories
102
103
104 def list_files(root, suffix, prefix=False):
105 """List all files ending with a suffix at a given root
106
107 Args:
108 root (str): Path to directory whose folders need to be listed
109 suffix (str or tuple): Suffix of the files to match, e.g. '.png' or ('.jpg', '.png').
110 It uses the Python "str.endswith" method and is passed directly
111 prefix (bool, optional): If true, prepends the path to each result, otherwise
112 only returns the name of the files found
113 """
114 root = os.path.expanduser(root)
115 files = [p for p in os.listdir(root) if os.path.isfile(os.path.join(root, p)) and p.endswith(suffix)]
116 if prefix is True:
117 files = [os.path.join(root, d) for d in files]
118 return files
119
120
121 def download_file_from_google_drive(file_id, root, filename=None, md5=None):
122 """Download a Google Drive file from and place it in root.
123
124 Args:
125 file_id (str): id of file to be downloaded
126 root (str): Directory to place downloaded file in
127 filename (str, optional): Name to save the file under. If None, use the id of the file.
128 md5 (str, optional): MD5 checksum of the download. If None, do not check
129 """
130 # Based on https://stackoverflow.com/questions/38511444/python-download-files-from-google-drive-using-url
131 import requests
132 url = "https://docs.google.com/uc?export=download"
133
134 root = os.path.expanduser(root)
135 if not filename:
136 filename = file_id
137 fpath = os.path.join(root, filename)
138
139 os.makedirs(root, exist_ok=True)
140
141 if os.path.isfile(fpath) and check_integrity(fpath, md5):
142 print('Using downloaded and verified file: ' + fpath)
143 else:
144 session = requests.Session()
145
146 response = session.get(url, params={'id': file_id}, stream=True)
147 token = _get_confirm_token(response)
148
149 if token:
150 params = {'id': file_id, 'confirm': token}
151 response = session.get(url, params=params, stream=True)
152
153 _save_response_content(response, fpath)
154
155
156 def _get_confirm_token(response):
157 for key, value in response.cookies.items():
158 if key.startswith('download_warning'):
159 return value
160
161 return None
162
163
164 def _save_response_content(response, destination, chunk_size=32768):
165 with open(destination, "wb") as f:
166 pbar = tqdm(total=None)
167 progress = 0
168 for chunk in response.iter_content(chunk_size):
169 if chunk: # filter out keep-alive new chunks
170 f.write(chunk)
171 progress += len(chunk)
172 pbar.update(progress - pbar.n)
173 pbar.close()
174
175
176 def _is_tarxz(filename):
177 return filename.endswith(".tar.xz")
178
179
180 def _is_tar(filename):
181 return filename.endswith(".tar")
182
183
184 def _is_targz(filename):
185 return filename.endswith(".tar.gz")
186
187
188 def _is_tgz(filename):
189 return filename.endswith(".tgz")
190
191
192 def _is_gzip(filename):
193 return filename.endswith(".gz") and not filename.endswith(".tar.gz")
194
195
196 def _is_zip(filename):
197 return filename.endswith(".zip")
198
199
200 def extract_archive(from_path, to_path=None, remove_finished=False):
201 if to_path is None:
202 to_path = os.path.dirname(from_path)
203
204 if _is_tar(from_path):
205 with tarfile.open(from_path, 'r') as tar:
206 tar.extractall(path=to_path)
207 elif _is_targz(from_path) or _is_tgz(from_path):
208 with tarfile.open(from_path, 'r:gz') as tar:
209 tar.extractall(path=to_path)
210 elif _is_tarxz(from_path):
211 with tarfile.open(from_path, 'r:xz') as tar:
212 tar.extractall(path=to_path)
213 elif _is_gzip(from_path):
214 to_path = os.path.join(to_path, os.path.splitext(os.path.basename(from_path))[0])
215 with open(to_path, "wb") as out_f, gzip.GzipFile(from_path) as zip_f:
216 out_f.write(zip_f.read())
217 elif _is_zip(from_path):
218 with zipfile.ZipFile(from_path, 'r') as z:
219 z.extractall(to_path)
220 else:
221 raise ValueError("Extraction of {} not supported".format(from_path))
222
223 if remove_finished:
224 os.remove(from_path)
225
226
227 def download_and_extract_archive(url, download_root, extract_root=None, filename=None,
228 md5=None, remove_finished=False):
229 download_root = os.path.expanduser(download_root)
230 if extract_root is None:
231 extract_root = download_root
232 if not filename:
233 filename = os.path.basename(url)
234
235 download_url(url, download_root, filename, md5)
236
237 archive = os.path.join(download_root, filename)
238 print("Extracting {} to {}".format(archive, extract_root))
239 extract_archive(archive, extract_root, remove_finished)
240
241
242 def iterable_to_str(iterable):
243 return "'" + "', '".join([str(item) for item in iterable]) + "'"
244
245
246 def verify_str_arg(value, arg=None, valid_values=None, custom_msg=None):
247 if not isinstance(value, torch._six.string_classes):
248 if arg is None:
249 msg = "Expected type str, but got type {type}."
250 else:
251 msg = "Expected type str for argument {arg}, but got type {type}."
252 msg = msg.format(type=type(value), arg=arg)
253 raise ValueError(msg)
254
255 if valid_values is None:
256 return value
257
258 if value not in valid_values:
259 if custom_msg is not None:
260 msg = custom_msg
261 else:
262 msg = ("Unknown value '{value}' for argument {arg}. "
263 "Valid values are {{{valid_values}}}.")
264 msg = msg.format(value=value, arg=arg,
265 valid_values=iterable_to_str(valid_values))
266 raise ValueError(msg)
267
268 return value
269
[end of torchvision/datasets/utils.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/torchvision/datasets/utils.py b/torchvision/datasets/utils.py
--- a/torchvision/datasets/utils.py
+++ b/torchvision/datasets/utils.py
@@ -118,6 +118,10 @@
return files
+def _quota_exceeded(response: "requests.models.Response") -> bool:
+ return "Google Drive - Quota exceeded" in response.text
+
+
def download_file_from_google_drive(file_id, root, filename=None, md5=None):
"""Download a Google Drive file from and place it in root.
@@ -150,6 +154,14 @@
params = {'id': file_id, 'confirm': token}
response = session.get(url, params=params, stream=True)
+ if _quota_exceeded(response):
+ msg = (
+ f"The daily quota of the file {filename} is exceeded and it "
+ f"can't be downloaded. This is a limitation of Google Drive "
+ f"and can only be overcome by trying again later."
+ )
+ raise RuntimeError(msg)
+
_save_response_content(response, fpath)
| {"golden_diff": "diff --git a/torchvision/datasets/utils.py b/torchvision/datasets/utils.py\n--- a/torchvision/datasets/utils.py\n+++ b/torchvision/datasets/utils.py\n@@ -118,6 +118,10 @@\n return files\n \n \n+def _quota_exceeded(response: \"requests.models.Response\") -> bool:\n+ return \"Google Drive - Quota exceeded\" in response.text\n+\n+\n def download_file_from_google_drive(file_id, root, filename=None, md5=None):\n \"\"\"Download a Google Drive file from and place it in root.\n \n@@ -150,6 +154,14 @@\n params = {'id': file_id, 'confirm': token}\n response = session.get(url, params=params, stream=True)\n \n+ if _quota_exceeded(response):\n+ msg = (\n+ f\"The daily quota of the file {filename} is exceeded and it \"\n+ f\"can't be downloaded. This is a limitation of Google Drive \"\n+ f\"and can only be overcome by trying again later.\"\n+ )\n+ raise RuntimeError(msg)\n+\n _save_response_content(response, fpath)\n", "issue": "Failed to download CelebA in Colab\n## \ud83d\udc1b Bug\r\n\r\nIt fails to download the following files **img_align_celeba.zip**\r\n\r\n## To Reproduce\r\n\r\nSteps to reproduce the behavior:\r\n\r\n1. `from torchvision import datasets`\r\n`trainset = datasets.CelebA(root='./data/', split='train', target_type=\"attr\", transform=transform, download=True)`\r\n\r\nError:\r\n```\r\nTraceback (most recent call last):\r\n File \"transfer_learning.py\", line 123, in <module>\r\n trainset = datasets.CelebA(root='./data/', split='train', transform=transform, download=True)\r\n File \"/usr/local/lib/python3.6/dist-packages/torchvision/datasets/celeba.py\", line 66, in __init__\r\n self.download()\r\n File \"/usr/local/lib/python3.6/dist-packages/torchvision/datasets/celeba.py\", line 120, in download\r\n with zipfile.ZipFile(os.path.join(self.root, self.base_folder, \"img_align_celeba.zip\"), \"r\") as f:\r\n File \"/usr/lib/python3.6/zipfile.py\", line 1131, in __init__\r\n self._RealGetContents()\r\n File \"/usr/lib/python3.6/zipfile.py\", line 1198, in _RealGetContents\r\n raise BadZipFile(\"File is not a zip file\")\r\nzipfile.BadZipFile: File is not a zip file\r\n```\r\n\r\n## Expected behavior\r\n\r\n## Environment\r\n\r\n```\r\nPyTorch version: 1.5.0+cu101\r\nIs debug build: No\r\nCUDA used to build PyTorch: 10.1\r\n\r\nOS: Ubuntu 18.04.3 LTS\r\nGCC version: (Ubuntu 7.5.0-3ubuntu1~18.04) 7.5.0\r\nCMake version: version 3.12.0\r\n\r\nPython version: 3.6\r\nIs CUDA available: No\r\nCUDA runtime version: 10.1.243\r\nGPU models and configuration: Could not collect\r\nNvidia driver version: Could not collect\r\ncuDNN version: /usr/lib/x86_64-linux-gnu/libcudnn.so.7.6.5\r\n\r\nVersions of relevant libraries:\r\n[pip3] numpy==1.18.5\r\n[pip3] torch==1.5.0+cu101\r\n[pip3] torchsummary==1.5.1\r\n[pip3] torchtext==0.3.1\r\n[pip3] torchvision==0.6.0+cu101\r\n[conda] Could not collect\r\n```\r\n\r\n## Additional context\r\n\r\n<!-- Add any other context about the problem here. -->\r\n\n", "before_files": [{"content": "import os\nimport os.path\nimport hashlib\nimport gzip\nimport errno\nimport tarfile\nimport zipfile\n\nimport torch\nfrom torch.utils.model_zoo import tqdm\n\n\ndef gen_bar_updater():\n pbar = tqdm(total=None)\n\n def bar_update(count, block_size, total_size):\n if pbar.total is None and total_size:\n pbar.total = total_size\n progress_bytes = count * block_size\n pbar.update(progress_bytes - pbar.n)\n\n return bar_update\n\n\ndef calculate_md5(fpath, chunk_size=1024 * 1024):\n md5 = hashlib.md5()\n with open(fpath, 'rb') as f:\n for chunk in iter(lambda: f.read(chunk_size), b''):\n md5.update(chunk)\n return md5.hexdigest()\n\n\ndef check_md5(fpath, md5, **kwargs):\n return md5 == calculate_md5(fpath, **kwargs)\n\n\ndef check_integrity(fpath, md5=None):\n if not os.path.isfile(fpath):\n return False\n if md5 is None:\n return True\n return check_md5(fpath, md5)\n\n\ndef download_url(url, root, filename=None, md5=None):\n \"\"\"Download a file from a url and place it in root.\n\n Args:\n url (str): URL to download file from\n root (str): Directory to place downloaded file in\n filename (str, optional): Name to save the file under. If None, use the basename of the URL\n md5 (str, optional): MD5 checksum of the download. If None, do not check\n \"\"\"\n import urllib\n\n root = os.path.expanduser(root)\n if not filename:\n filename = os.path.basename(url)\n fpath = os.path.join(root, filename)\n\n os.makedirs(root, exist_ok=True)\n\n # check if file is already present locally\n if check_integrity(fpath, md5):\n print('Using downloaded and verified file: ' + fpath)\n else: # download the file\n try:\n print('Downloading ' + url + ' to ' + fpath)\n urllib.request.urlretrieve(\n url, fpath,\n reporthook=gen_bar_updater()\n )\n except (urllib.error.URLError, IOError) as e:\n if url[:5] == 'https':\n url = url.replace('https:', 'http:')\n print('Failed download. Trying https -> http instead.'\n ' Downloading ' + url + ' to ' + fpath)\n urllib.request.urlretrieve(\n url, fpath,\n reporthook=gen_bar_updater()\n )\n else:\n raise e\n # check integrity of downloaded file\n if not check_integrity(fpath, md5):\n raise RuntimeError(\"File not found or corrupted.\")\n\n\ndef list_dir(root, prefix=False):\n \"\"\"List all directories at a given root\n\n Args:\n root (str): Path to directory whose folders need to be listed\n prefix (bool, optional): If true, prepends the path to each result, otherwise\n only returns the name of the directories found\n \"\"\"\n root = os.path.expanduser(root)\n directories = [p for p in os.listdir(root) if os.path.isdir(os.path.join(root, p))]\n if prefix is True:\n directories = [os.path.join(root, d) for d in directories]\n return directories\n\n\ndef list_files(root, suffix, prefix=False):\n \"\"\"List all files ending with a suffix at a given root\n\n Args:\n root (str): Path to directory whose folders need to be listed\n suffix (str or tuple): Suffix of the files to match, e.g. '.png' or ('.jpg', '.png').\n It uses the Python \"str.endswith\" method and is passed directly\n prefix (bool, optional): If true, prepends the path to each result, otherwise\n only returns the name of the files found\n \"\"\"\n root = os.path.expanduser(root)\n files = [p for p in os.listdir(root) if os.path.isfile(os.path.join(root, p)) and p.endswith(suffix)]\n if prefix is True:\n files = [os.path.join(root, d) for d in files]\n return files\n\n\ndef download_file_from_google_drive(file_id, root, filename=None, md5=None):\n \"\"\"Download a Google Drive file from and place it in root.\n\n Args:\n file_id (str): id of file to be downloaded\n root (str): Directory to place downloaded file in\n filename (str, optional): Name to save the file under. If None, use the id of the file.\n md5 (str, optional): MD5 checksum of the download. If None, do not check\n \"\"\"\n # Based on https://stackoverflow.com/questions/38511444/python-download-files-from-google-drive-using-url\n import requests\n url = \"https://docs.google.com/uc?export=download\"\n\n root = os.path.expanduser(root)\n if not filename:\n filename = file_id\n fpath = os.path.join(root, filename)\n\n os.makedirs(root, exist_ok=True)\n\n if os.path.isfile(fpath) and check_integrity(fpath, md5):\n print('Using downloaded and verified file: ' + fpath)\n else:\n session = requests.Session()\n\n response = session.get(url, params={'id': file_id}, stream=True)\n token = _get_confirm_token(response)\n\n if token:\n params = {'id': file_id, 'confirm': token}\n response = session.get(url, params=params, stream=True)\n\n _save_response_content(response, fpath)\n\n\ndef _get_confirm_token(response):\n for key, value in response.cookies.items():\n if key.startswith('download_warning'):\n return value\n\n return None\n\n\ndef _save_response_content(response, destination, chunk_size=32768):\n with open(destination, \"wb\") as f:\n pbar = tqdm(total=None)\n progress = 0\n for chunk in response.iter_content(chunk_size):\n if chunk: # filter out keep-alive new chunks\n f.write(chunk)\n progress += len(chunk)\n pbar.update(progress - pbar.n)\n pbar.close()\n\n\ndef _is_tarxz(filename):\n return filename.endswith(\".tar.xz\")\n\n\ndef _is_tar(filename):\n return filename.endswith(\".tar\")\n\n\ndef _is_targz(filename):\n return filename.endswith(\".tar.gz\")\n\n\ndef _is_tgz(filename):\n return filename.endswith(\".tgz\")\n\n\ndef _is_gzip(filename):\n return filename.endswith(\".gz\") and not filename.endswith(\".tar.gz\")\n\n\ndef _is_zip(filename):\n return filename.endswith(\".zip\")\n\n\ndef extract_archive(from_path, to_path=None, remove_finished=False):\n if to_path is None:\n to_path = os.path.dirname(from_path)\n\n if _is_tar(from_path):\n with tarfile.open(from_path, 'r') as tar:\n tar.extractall(path=to_path)\n elif _is_targz(from_path) or _is_tgz(from_path):\n with tarfile.open(from_path, 'r:gz') as tar:\n tar.extractall(path=to_path)\n elif _is_tarxz(from_path):\n with tarfile.open(from_path, 'r:xz') as tar:\n tar.extractall(path=to_path)\n elif _is_gzip(from_path):\n to_path = os.path.join(to_path, os.path.splitext(os.path.basename(from_path))[0])\n with open(to_path, \"wb\") as out_f, gzip.GzipFile(from_path) as zip_f:\n out_f.write(zip_f.read())\n elif _is_zip(from_path):\n with zipfile.ZipFile(from_path, 'r') as z:\n z.extractall(to_path)\n else:\n raise ValueError(\"Extraction of {} not supported\".format(from_path))\n\n if remove_finished:\n os.remove(from_path)\n\n\ndef download_and_extract_archive(url, download_root, extract_root=None, filename=None,\n md5=None, remove_finished=False):\n download_root = os.path.expanduser(download_root)\n if extract_root is None:\n extract_root = download_root\n if not filename:\n filename = os.path.basename(url)\n\n download_url(url, download_root, filename, md5)\n\n archive = os.path.join(download_root, filename)\n print(\"Extracting {} to {}\".format(archive, extract_root))\n extract_archive(archive, extract_root, remove_finished)\n\n\ndef iterable_to_str(iterable):\n return \"'\" + \"', '\".join([str(item) for item in iterable]) + \"'\"\n\n\ndef verify_str_arg(value, arg=None, valid_values=None, custom_msg=None):\n if not isinstance(value, torch._six.string_classes):\n if arg is None:\n msg = \"Expected type str, but got type {type}.\"\n else:\n msg = \"Expected type str for argument {arg}, but got type {type}.\"\n msg = msg.format(type=type(value), arg=arg)\n raise ValueError(msg)\n\n if valid_values is None:\n return value\n\n if value not in valid_values:\n if custom_msg is not None:\n msg = custom_msg\n else:\n msg = (\"Unknown value '{value}' for argument {arg}. \"\n \"Valid values are {{{valid_values}}}.\")\n msg = msg.format(value=value, arg=arg,\n valid_values=iterable_to_str(valid_values))\n raise ValueError(msg)\n\n return value\n", "path": "torchvision/datasets/utils.py"}]} | 3,914 | 252 |
gh_patches_debug_21716 | rasdani/github-patches | git_diff | beeware__toga-950 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Open_File_Dialog crashes on W10 with custom file_type
following code:
```
fname = self.main_window.open_file_dialog(
title="Open RTF file",
multiselect=False,
file_types=['rtf']
)
```
## Expected Behavior
should work fine ond every platform
## Current Behavior
works fine on linux, crashes on Windows 10:
```
Traceback (most recent call last):
File "C:\Users\user\AppData\Local\Programs\NewGAN Manager\\app\newganmanager\app.py", line 301, in action_open_file_dialog
file_types=['rtf']
File "C:\Users\user\AppData\Local\Programs\NewGAN Manager\\app_packages\toga\window.py", line 282, in open_file_dialog
return self._impl.open_file_dialog(title, initial_directory, file_types, multiselect)
File "C:\Users\user\AppData\Local\Programs\NewGAN Manager\\app_packages\toga_winforms\window.py", line 182, in open_file_dialog
"|All files (*.*)|*.*"
System.ArgumentException: Die angegebene Filterzeichenfolge ist ungültig. Sie muss eine Beschreibung des Filters gefolgt von einem vertikalen Strich (|) und dem Filtermuster enthalten. Die Zeichenfolgen für andere Filteroptionen müssen ebenfalls durch einen vertikalen Strich getrennt werden. Beispiel: "Textdateien (*.txt)|*.txt|Alle Dateien (*.*)|*.*".
bei System.Windows.Forms.FileDialog.set_Filter(String value)
```
Translated: The provided filter-string is invalid. It must consist of a description of the filter a vertical bar (|) and the filter-pattern. Following the example of the FIXME
## Steps to reproduce
see snippet.
* Python Version (list the specific version number)
python 3.7
* Operating System and Version (select from the following and list the specific version number; if your OS is not listed, list that as well)
- [x] Windows - version: 10
* Toga Version (list the specific version number or git hash)
* Toga Target (the type of app you are trying to generate)
- [ ] android
- [ ] cocoa
- [ ] django
- [x] gtk
- [ ] iOS
- [ ] tvOS
- [ ] watchOS
- [x] winforms
- [ ] win32
- [ ] Other (please specify)
## Proposed Solution
change https://github.com/beeware/toga/blob/master/src/winforms/toga_winforms/window.py#L181
to
```
file_string = "{0} files (*.{0})|*.{0}"
fil = '|'.join([file_string.format(ext) for ext in file_types]) + \
"|All files (*.*)|*.*"
```
This is ofc not an ideal solution, because we just add a generic description, but since there is no wrapper for an appropriate datatype I feel this would be a reasonable bridging solution.
src: https://docs.microsoft.com/en-us/dotnet/api/system.windows.forms.filedialog.filter?view=netcore-3.1
P.S: I can't contribute to windows myself, because I barely get my hands on a W10 machine and I just had a few minutes to test it out. Cheers
</issue>
<code>
[start of src/winforms/toga_winforms/window.py]
1 from toga import GROUP_BREAK, SECTION_BREAK
2
3 from .libs import WinForms, Size
4
5
6 class WinFormsViewport:
7 def __init__(self, native, frame):
8 self.native = native
9 self.frame = frame
10 self.baseline_dpi = 96
11
12 @property
13 def width(self):
14 # Treat `native=None` as a 0x0 viewport
15 if self.native is None:
16 return 0
17 return self.native.ClientSize.Width
18
19 @property
20 def height(self):
21 if self.native is None:
22 return 0
23 # Subtract any vertical shift of the frame. This is to allow
24 # for toolbars, or any other viewport-level decoration.
25 return self.native.ClientSize.Height - self.frame.vertical_shift
26
27 @property
28 def dpi(self):
29 if self.native is None:
30 return self.baseline_dpi
31 return self.native.CreateGraphics().DpiX
32
33
34 class Window:
35 def __init__(self, interface):
36 self.interface = interface
37 self.interface._impl = self
38 self.create()
39
40 def create(self):
41 self.native = WinForms.Form(self)
42 self.native.ClientSize = Size(*self.interface._size)
43 self.native.interface = self.interface
44 self.native.Resize += self.winforms_resize
45 self.toolbar_native = None
46 self.toolbar_items = None
47
48 def create_toolbar(self):
49 self.toolbar_native = WinForms.ToolStrip()
50 for cmd in self.interface.toolbar:
51 if cmd == GROUP_BREAK:
52 item = WinForms.ToolStripSeparator()
53 elif cmd == SECTION_BREAK:
54 item = WinForms.ToolStripSeparator()
55 else:
56 if cmd.icon is not None:
57 native_icon = cmd.icon._impl.native
58 item = WinForms.ToolStripMenuItem(cmd.label, native_icon.ToBitmap())
59 else:
60 item = WinForms.ToolStripMenuItem(cmd.label)
61 item.Click += cmd._impl.as_handler()
62 cmd._impl.native.append(item)
63 self.toolbar_native.Items.Add(item)
64
65 def set_position(self, position):
66 pass
67
68 def set_size(self, size):
69 self.native.ClientSize = Size(*self.interface._size)
70
71 def set_app(self, app):
72 pass
73
74 @property
75 def vertical_shift(self):
76 # vertical shift is the toolbar height or 0
77 result = 0
78 try:
79 result += self.native.interface._impl.toolbar_native.Height
80 except AttributeError:
81 pass
82 try:
83 result += self.native.interface._impl.native.MainMenuStrip.Height
84 except AttributeError:
85 pass
86 return result
87
88 def set_content(self, widget):
89 if self.toolbar_native:
90 self.native.Controls.Add(self.toolbar_native)
91 # Create the lookup table of menu items,
92 # then force the creation of the menus.
93 self.native.Controls.Add(widget.native)
94
95 # Set the widget's viewport to be based on the window's content.
96 widget.viewport = WinFormsViewport(native=self.native, frame=self)
97 widget.frame = self
98
99 # Add all children to the content widget.
100 for child in widget.interface.children:
101 child._impl.container = widget
102
103 def set_title(self, title):
104 self.native.Text = title
105
106 def show(self):
107 # The first render of the content will establish the
108 # minimum possible content size; use that to enforce
109 # a minimum window size.
110 TITLEBAR_HEIGHT = WinForms.SystemInformation.CaptionHeight
111 # Now that the content is visible, we can do our initial hinting,
112 # and use that as the basis for setting the minimum window size.
113 self.interface.content._impl.rehint()
114 self.interface.content.style.layout(
115 self.interface.content,
116 WinFormsViewport(native=None, frame=None),
117 )
118 self.native.MinimumSize = Size(
119 int(self.interface.content.layout.width),
120 int(self.interface.content.layout.height) + TITLEBAR_HEIGHT
121 )
122 self.interface.content.refresh()
123
124 self.native.Show()
125
126 def winforms_FormClosing(self, event, handler):
127 if self.interface.app.on_exit:
128 self.interface.app.on_exit(self.interface.app)
129
130 def set_full_screen(self, is_full_screen):
131 self.interface.factory.not_implemented('Window.set_full_screen()')
132
133 def on_close(self):
134 pass
135
136 def close(self):
137 self.native.Close()
138
139 def winforms_resize(self, sender, args):
140 if self.interface.content:
141 # Re-layout the content
142 self.interface.content.refresh()
143
144 def info_dialog(self, title, message):
145 return WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.OK)
146
147 def question_dialog(self, title, message):
148 result = WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.YesNo)
149 return result
150
151 def confirm_dialog(self, title, message):
152 result = WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.OKCancel)
153 # this returns 1 (DialogResult.OK enum) for OK and 2 for Cancel
154 return True if result == WinForms.DialogResult.OK else False
155
156 def error_dialog(self, title, message):
157 return WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.OK,
158 WinForms.MessageBoxIcon.Error)
159
160 def stack_trace_dialog(self, title, message, content, retry=False):
161 pass
162
163 def save_file_dialog(self, title, suggested_filename, file_types):
164 dialog = WinForms.SaveFileDialog()
165 dialog.Title = title
166 if suggested_filename is not None:
167 dialog.FileName = suggested_filename
168 if dialog.ShowDialog() == WinForms.DialogResult.OK:
169 return dialog.FileName
170 else:
171 raise ValueError("No filename provided in the save file dialog")
172
173 def open_file_dialog(self, title, initial_directory, file_types, multiselect):
174 dialog = WinForms.OpenFileDialog()
175 dialog.Title = title
176 if initial_directory is not None:
177 dialog.InitialDirectory = initial_directory
178 if file_types is not None:
179 # FIXME This is the example of Filter string: Text files (*.txt)|*.txt|All files (*.*)|*.*
180
181 dialog.Filter = ';'.join(["*." + ext for ext in file_types]) + \
182 "|All files (*.*)|*.*"
183 if multiselect:
184 dialog.Multiselect = True
185 if dialog.ShowDialog() == WinForms.DialogResult.OK:
186 return dialog.FileName
187 else:
188 raise ValueError("No filename provided in the open file dialog")
189
190 def select_folder_dialog(self, title, initial_directory, multiselect):
191 dialog = WinForms.FolderBrowserDialog()
192 dialog.Title = title
193 if initial_directory is not None:
194 dialog.InitialDirectory = initial_directory
195
196 if dialog.ShowDialog() == WinForms.DialogResult.OK:
197 return [dialog.SelectedPath]
198 else:
199 raise ValueError("No folder provided in the select folder dialog")
200
[end of src/winforms/toga_winforms/window.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/src/winforms/toga_winforms/window.py b/src/winforms/toga_winforms/window.py
--- a/src/winforms/toga_winforms/window.py
+++ b/src/winforms/toga_winforms/window.py
@@ -176,10 +176,7 @@
if initial_directory is not None:
dialog.InitialDirectory = initial_directory
if file_types is not None:
- # FIXME This is the example of Filter string: Text files (*.txt)|*.txt|All files (*.*)|*.*
-
- dialog.Filter = ';'.join(["*." + ext for ext in file_types]) + \
- "|All files (*.*)|*.*"
+ dialog.Filter = self.build_filter(file_types)
if multiselect:
dialog.Multiselect = True
if dialog.ShowDialog() == WinForms.DialogResult.OK:
@@ -197,3 +194,8 @@
return [dialog.SelectedPath]
else:
raise ValueError("No folder provided in the select folder dialog")
+
+ def build_filter(self, file_types):
+ file_string = "{0} files (*.{0})|*.{0}"
+ return '|'.join([file_string.format(ext) for ext in file_types]) + \
+ "|All files (*.*)|*.*"
| {"golden_diff": "diff --git a/src/winforms/toga_winforms/window.py b/src/winforms/toga_winforms/window.py\n--- a/src/winforms/toga_winforms/window.py\n+++ b/src/winforms/toga_winforms/window.py\n@@ -176,10 +176,7 @@\n if initial_directory is not None:\n dialog.InitialDirectory = initial_directory\n if file_types is not None:\n- # FIXME This is the example of Filter string: Text files (*.txt)|*.txt|All files (*.*)|*.*\n-\n- dialog.Filter = ';'.join([\"*.\" + ext for ext in file_types]) + \\\n- \"|All files (*.*)|*.*\"\n+ dialog.Filter = self.build_filter(file_types)\n if multiselect:\n dialog.Multiselect = True\n if dialog.ShowDialog() == WinForms.DialogResult.OK:\n@@ -197,3 +194,8 @@\n return [dialog.SelectedPath]\n else:\n raise ValueError(\"No folder provided in the select folder dialog\")\n+\n+ def build_filter(self, file_types):\n+ file_string = \"{0} files (*.{0})|*.{0}\"\n+ return '|'.join([file_string.format(ext) for ext in file_types]) + \\\n+ \"|All files (*.*)|*.*\"\n", "issue": "Open_File_Dialog crashes on W10 with custom file_type\nfollowing code:\r\n```\r\nfname = self.main_window.open_file_dialog(\r\n title=\"Open RTF file\",\r\n multiselect=False,\r\n file_types=['rtf']\r\n)\r\n```\r\n\r\n## Expected Behavior\r\nshould work fine ond every platform\r\n\r\n## Current Behavior\r\nworks fine on linux, crashes on Windows 10:\r\n```\r\nTraceback (most recent call last):\r\n File \"C:\\Users\\user\\AppData\\Local\\Programs\\NewGAN Manager\\\\app\\newganmanager\\app.py\", line 301, in action_open_file_dialog\r\n file_types=['rtf']\r\n File \"C:\\Users\\user\\AppData\\Local\\Programs\\NewGAN Manager\\\\app_packages\\toga\\window.py\", line 282, in open_file_dialog\r\n return self._impl.open_file_dialog(title, initial_directory, file_types, multiselect)\r\n File \"C:\\Users\\user\\AppData\\Local\\Programs\\NewGAN Manager\\\\app_packages\\toga_winforms\\window.py\", line 182, in open_file_dialog\r\n \"|All files (*.*)|*.*\"\r\nSystem.ArgumentException: Die angegebene Filterzeichenfolge ist ung\u00fcltig. Sie muss eine Beschreibung des Filters gefolgt von einem vertikalen Strich (|) und dem Filtermuster enthalten. Die Zeichenfolgen f\u00fcr andere Filteroptionen m\u00fcssen ebenfalls durch einen vertikalen Strich getrennt werden. Beispiel: \"Textdateien (*.txt)|*.txt|Alle Dateien (*.*)|*.*\".\r\n bei System.Windows.Forms.FileDialog.set_Filter(String value)\r\n```\r\nTranslated: The provided filter-string is invalid. It must consist of a description of the filter a vertical bar (|) and the filter-pattern. Following the example of the FIXME\r\n\r\n## Steps to reproduce\r\nsee snippet.\r\n\r\n* Python Version (list the specific version number)\r\npython 3.7\r\n\r\n* Operating System and Version (select from the following and list the specific version number; if your OS is not listed, list that as well)\r\n\r\n - [x] Windows - version: 10\r\n\r\n\r\n* Toga Version (list the specific version number or git hash)\r\n\r\n* Toga Target (the type of app you are trying to generate)\r\n\r\n - [ ] android\r\n - [ ] cocoa\r\n - [ ] django\r\n - [x] gtk\r\n - [ ] iOS\r\n - [ ] tvOS\r\n - [ ] watchOS\r\n - [x] winforms\r\n - [ ] win32\r\n - [ ] Other (please specify)\r\n\r\n## Proposed Solution\r\nchange https://github.com/beeware/toga/blob/master/src/winforms/toga_winforms/window.py#L181\r\nto\r\n```\r\nfile_string = \"{0} files (*.{0})|*.{0}\"\r\nfil = '|'.join([file_string.format(ext) for ext in file_types]) + \\\r\n \"|All files (*.*)|*.*\"\r\n\r\n```\r\nThis is ofc not an ideal solution, because we just add a generic description, but since there is no wrapper for an appropriate datatype I feel this would be a reasonable bridging solution.\r\n\r\nsrc: https://docs.microsoft.com/en-us/dotnet/api/system.windows.forms.filedialog.filter?view=netcore-3.1\r\n\r\nP.S: I can't contribute to windows myself, because I barely get my hands on a W10 machine and I just had a few minutes to test it out. Cheers\n", "before_files": [{"content": "from toga import GROUP_BREAK, SECTION_BREAK\n\nfrom .libs import WinForms, Size\n\n\nclass WinFormsViewport:\n def __init__(self, native, frame):\n self.native = native\n self.frame = frame\n self.baseline_dpi = 96\n\n @property\n def width(self):\n # Treat `native=None` as a 0x0 viewport\n if self.native is None:\n return 0\n return self.native.ClientSize.Width\n\n @property\n def height(self):\n if self.native is None:\n return 0\n # Subtract any vertical shift of the frame. This is to allow\n # for toolbars, or any other viewport-level decoration.\n return self.native.ClientSize.Height - self.frame.vertical_shift\n\n @property\n def dpi(self):\n if self.native is None:\n return self.baseline_dpi\n return self.native.CreateGraphics().DpiX\n\n\nclass Window:\n def __init__(self, interface):\n self.interface = interface\n self.interface._impl = self\n self.create()\n\n def create(self):\n self.native = WinForms.Form(self)\n self.native.ClientSize = Size(*self.interface._size)\n self.native.interface = self.interface\n self.native.Resize += self.winforms_resize\n self.toolbar_native = None\n self.toolbar_items = None\n\n def create_toolbar(self):\n self.toolbar_native = WinForms.ToolStrip()\n for cmd in self.interface.toolbar:\n if cmd == GROUP_BREAK:\n item = WinForms.ToolStripSeparator()\n elif cmd == SECTION_BREAK:\n item = WinForms.ToolStripSeparator()\n else:\n if cmd.icon is not None:\n native_icon = cmd.icon._impl.native\n item = WinForms.ToolStripMenuItem(cmd.label, native_icon.ToBitmap())\n else:\n item = WinForms.ToolStripMenuItem(cmd.label)\n item.Click += cmd._impl.as_handler()\n cmd._impl.native.append(item)\n self.toolbar_native.Items.Add(item)\n\n def set_position(self, position):\n pass\n\n def set_size(self, size):\n self.native.ClientSize = Size(*self.interface._size)\n\n def set_app(self, app):\n pass\n\n @property\n def vertical_shift(self):\n # vertical shift is the toolbar height or 0\n result = 0\n try:\n result += self.native.interface._impl.toolbar_native.Height\n except AttributeError:\n pass\n try:\n result += self.native.interface._impl.native.MainMenuStrip.Height\n except AttributeError:\n pass\n return result\n\n def set_content(self, widget):\n if self.toolbar_native:\n self.native.Controls.Add(self.toolbar_native)\n # Create the lookup table of menu items,\n # then force the creation of the menus.\n self.native.Controls.Add(widget.native)\n\n # Set the widget's viewport to be based on the window's content.\n widget.viewport = WinFormsViewport(native=self.native, frame=self)\n widget.frame = self\n\n # Add all children to the content widget.\n for child in widget.interface.children:\n child._impl.container = widget\n\n def set_title(self, title):\n self.native.Text = title\n\n def show(self):\n # The first render of the content will establish the\n # minimum possible content size; use that to enforce\n # a minimum window size.\n TITLEBAR_HEIGHT = WinForms.SystemInformation.CaptionHeight\n # Now that the content is visible, we can do our initial hinting,\n # and use that as the basis for setting the minimum window size.\n self.interface.content._impl.rehint()\n self.interface.content.style.layout(\n self.interface.content,\n WinFormsViewport(native=None, frame=None),\n )\n self.native.MinimumSize = Size(\n int(self.interface.content.layout.width),\n int(self.interface.content.layout.height) + TITLEBAR_HEIGHT\n )\n self.interface.content.refresh()\n\n self.native.Show()\n\n def winforms_FormClosing(self, event, handler):\n if self.interface.app.on_exit:\n self.interface.app.on_exit(self.interface.app)\n\n def set_full_screen(self, is_full_screen):\n self.interface.factory.not_implemented('Window.set_full_screen()')\n\n def on_close(self):\n pass\n\n def close(self):\n self.native.Close()\n\n def winforms_resize(self, sender, args):\n if self.interface.content:\n # Re-layout the content\n self.interface.content.refresh()\n\n def info_dialog(self, title, message):\n return WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.OK)\n\n def question_dialog(self, title, message):\n result = WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.YesNo)\n return result\n\n def confirm_dialog(self, title, message):\n result = WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.OKCancel)\n # this returns 1 (DialogResult.OK enum) for OK and 2 for Cancel\n return True if result == WinForms.DialogResult.OK else False\n\n def error_dialog(self, title, message):\n return WinForms.MessageBox.Show(message, title, WinForms.MessageBoxButtons.OK,\n WinForms.MessageBoxIcon.Error)\n\n def stack_trace_dialog(self, title, message, content, retry=False):\n pass\n\n def save_file_dialog(self, title, suggested_filename, file_types):\n dialog = WinForms.SaveFileDialog()\n dialog.Title = title\n if suggested_filename is not None:\n dialog.FileName = suggested_filename\n if dialog.ShowDialog() == WinForms.DialogResult.OK:\n return dialog.FileName\n else:\n raise ValueError(\"No filename provided in the save file dialog\")\n\n def open_file_dialog(self, title, initial_directory, file_types, multiselect):\n dialog = WinForms.OpenFileDialog()\n dialog.Title = title\n if initial_directory is not None:\n dialog.InitialDirectory = initial_directory\n if file_types is not None:\n # FIXME This is the example of Filter string: Text files (*.txt)|*.txt|All files (*.*)|*.*\n\n dialog.Filter = ';'.join([\"*.\" + ext for ext in file_types]) + \\\n \"|All files (*.*)|*.*\"\n if multiselect:\n dialog.Multiselect = True\n if dialog.ShowDialog() == WinForms.DialogResult.OK:\n return dialog.FileName\n else:\n raise ValueError(\"No filename provided in the open file dialog\")\n\n def select_folder_dialog(self, title, initial_directory, multiselect):\n dialog = WinForms.FolderBrowserDialog()\n dialog.Title = title\n if initial_directory is not None:\n dialog.InitialDirectory = initial_directory\n\n if dialog.ShowDialog() == WinForms.DialogResult.OK:\n return [dialog.SelectedPath]\n else:\n raise ValueError(\"No folder provided in the select folder dialog\")\n", "path": "src/winforms/toga_winforms/window.py"}]} | 3,207 | 278 |
gh_patches_debug_12680 | rasdani/github-patches | git_diff | tensorflow__addons-2505 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Embedding Bag Fails GPU Testing
It looks like our new layer is failing for GPU tests.
https://github.com/tensorflow/addons/pull/2501
https://source.cloud.google.com/results/invocations/42c93476-b0f7-4192-9da5-0dac23c4c92b/targets/tensorflow_addons%2Fubuntu%2Fgpu%2Fpy3%2Fpresubmit/log
@Rocketknight1 when time allows could you please take a look? We can trigger GPU testing on any PR you submit.
e.g.
```
tensorflow_addons/layers/tests/embedding_bag_test.py:120:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
a = array([[0.40625, 0.40625, 0.40625, ..., 0.40625, 0.40625, 0.40625],
[0.25 , 0.25 , 0.25 , ..., 0.25 , 0...0.34375, 0.34375, ..., 0.34375, 0.34375, 0.34375],
[0.21875, 0.21875, 0.21875, ..., 0.21875, 0.21875, 0.21875]])
b = array([[13., 13., 13., ..., 13., 13., 13.],
[ 8., 8., 8., ..., 8., 8., 8.],
[ 7., 7., 7., ..., 7... 7., 7., ..., 7., 7., 7.],
[11., 11., 11., ..., 11., 11., 11.],
[ 7., 7., 7., ..., 7., 7., 7.]])
rtol = 1e-06, atol = 1e-06, float_rtol = 1e-06, float_atol = 1e-06
half_rtol = 0.001, half_atol = 0.001, bfloat16_rtol = 0.01, bfloat16_atol = 0.01
def assert_allclose_according_to_type(
a,
b,
rtol=1e-6,
atol=1e-6,
float_rtol=1e-6,
float_atol=1e-6,
half_rtol=1e-3,
half_atol=1e-3,
bfloat16_rtol=1e-2,
bfloat16_atol=1e-2,
):
"""
Similar to tf.test.TestCase.assertAllCloseAccordingToType()
but this doesn't need a subclassing to run.
"""
a = np.array(a)
b = np.array(b)
# types with lower tol are put later to overwrite previous ones.
if (
a.dtype == np.float32
or b.dtype == np.float32
or a.dtype == np.complex64
or b.dtype == np.complex64
):
rtol = max(rtol, float_rtol)
atol = max(atol, float_atol)
if a.dtype == np.float16 or b.dtype == np.float16:
rtol = max(rtol, half_rtol)
atol = max(atol, half_atol)
if a.dtype == tf.bfloat16.as_numpy_dtype or b.dtype == tf.bfloat16.as_numpy_dtype:
rtol = max(rtol, bfloat16_rtol)
atol = max(atol, bfloat16_atol)
> np.testing.assert_allclose(a, b, rtol=rtol, atol=atol)
E AssertionError:
E Not equal to tolerance rtol=1e-06, atol=1e-06
E
E Mismatched elements: 1008 / 1008 (100%)
E Max absolute difference: 14.53125
E Max relative difference: 0.96875
E x: array([[0.40625, 0.40625, 0.40625, ..., 0.40625, 0.40625, 0.40625],
E [0.25 , 0.25 , 0.25 , ..., 0.25 , 0.25 , 0.25 ],
E [0.21875, 0.21875, 0.21875, ..., 0.21875, 0.21875, 0.21875],...
E y: array([[13., 13., 13., ..., 13., 13., 13.],
E [ 8., 8., 8., ..., 8., 8., 8.],
E [ 7., 7., 7., ..., 7., 7., 7.],...
```
</issue>
<code>
[start of tensorflow_addons/layers/embedding_bag.py]
1 # Copyright 2021 The TensorFlow Authors. All Rights Reserved.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14 # ==============================================================================
15
16 import tensorflow as tf
17 from typeguard import typechecked
18
19 from tensorflow_addons.utils.types import Constraint, Initializer, Regularizer
20 from tensorflow_addons.utils.resource_loader import LazySO
21
22 _embedding_bag_so = LazySO("custom_ops/layers/_embedding_bag_ops.so")
23
24
25 def _embedding_bag(
26 indices,
27 params,
28 weights=None,
29 combiner="sum",
30 name=None,
31 ):
32 """EmbeddingBag computation.
33
34 See [PyTorch op](https://pytorch.org/docs/stable/generated/torch.nn.EmbeddingBag.html).
35
36 Equivalent to tf.gather() followed by tf.reduce_{sum,mean}() across the last dimension, with optional
37 weights. Fusing these into a single op has massive benefits for execution speed and particularly
38 memory usage, as the intermediate output of the gather never needs to be materialized.
39
40 Args:
41 indices: An int32 or int64 `Tensor` of the indices to gather from
42 `params`. Must be at least 2-dimensional, as the last dimension
43 will be summed out. Maximum value must be less than params.shape[0].
44 params: A float32 `Tensor` from which to gather params. Must be rank 2.
45 weights: A float32 `Tensor` of weights which will be applied to each of
46 the gathered embedding vectors before the sum step.
47 name: A name for the operation (optional).
48
49 Returns:
50 A `Tensor` of the format specified by `data_format`.
51 """
52 if weights is None:
53 weights = tf.ones_like(indices, dtype=params.dtype)
54 elif combiner != "sum":
55 raise RuntimeError(
56 "Combiner mode must be 'sum' when weights are supplied to EmbeddingBag!"
57 )
58
59 return _embedding_bag_so.ops.addons_embedding_bag(
60 indices, params, weights, combiner=combiner.upper(), name=name
61 )
62
63
64 @tf.RegisterGradient("Addons>EmbeddingBag")
65 def _embedding_bag_grad(op, grads):
66 indices, params, weights = op.inputs[:3]
67 combiner = op.get_attr("combiner")
68 value_grads, weight_grads = _embedding_bag_so.ops.addons_embedding_bag_grad(
69 indices, params, weights, grads, combiner=combiner
70 )
71 return [None, value_grads, weight_grads]
72
73
74 @tf.keras.utils.register_keras_serializable(package="Addons")
75 class EmbeddingBag(tf.keras.layers.Layer):
76 """EmbeddingBag Layer.
77
78 See [PyTorch op](https://pytorch.org/docs/stable/generated/torch.nn.EmbeddingBag.html).
79
80 Equivalent to tf.gather() followed by tf.reduce_sum() across the last dimension, with optional
81 weights. Fusing these into a single op has massive benefits for execution speed and particularly
82 memory usage, as the intermediate output of the gather never needs to be materialized.
83
84 Input Shapes:
85 indices: An int32 or int64 `Tensor` of the indices to gather from
86 `params`. Must be at least 2-dimensional, as the last dimension
87 will be summed out. Maximum value must be less than params.shape[0].
88 params: A float32 `Tensor` from which to gather params. Must be rank 2.
89 weights: A float32 `Tensor` of weights which will be applied to each of
90 the gathered embedding vectors before the sum step.
91
92 Output shape:
93 indices.shape[:-1], params.shape[-1]
94 """
95
96 @typechecked
97 def __init__(
98 self,
99 input_dim: int,
100 output_dim: int,
101 embeddings_initializer: Initializer = "uniform",
102 embeddings_regularizer: Regularizer = None,
103 embeddings_constraint: Constraint = None,
104 mask_zero: bool = False,
105 combiner: str = "sum",
106 **kwargs,
107 ):
108 super(EmbeddingBag, self).__init__(**kwargs)
109 if input_dim <= 0 or output_dim <= 0:
110 raise ValueError(
111 "Both `input_dim` and `output_dim` should be positive, "
112 "found input_dim {} and output_dim {}".format(input_dim, output_dim)
113 )
114 self.input_dim = input_dim
115 self.output_dim = output_dim
116 self.embeddings_initializer = tf.keras.initializers.get(embeddings_initializer)
117 self.embeddings_regularizer = tf.keras.regularizers.get(embeddings_regularizer)
118 self.embeddings_constraint = tf.keras.constraints.get(embeddings_constraint)
119 self.mask_zero = mask_zero
120 self.supports_masking = mask_zero
121 self.combiner = combiner
122
123 def build(self, input_shape):
124 self.embeddings = self.add_weight(
125 shape=(self.input_dim, self.output_dim),
126 name="embeddings",
127 initializer=self.embeddings_initializer,
128 regularizer=self.embeddings_regularizer,
129 constraint=self.embeddings_constraint,
130 )
131 self.built = True
132
133 def call(self, indices, weights=None):
134 return _embedding_bag(indices, self.embeddings, weights, combiner=self.combiner)
135
136 def get_config(self):
137 config = {
138 "input_dim": self.input_dim,
139 "output_dim": self.output_dim,
140 "embeddings_initializer": tf.keras.initializers.serialize(
141 self.embeddings_initializer
142 ),
143 "embeddings_regularizer": tf.keras.regularizers.serialize(
144 self.embeddings_regularizer
145 ),
146 "embeddings_constraint": tf.keras.constraints.serialize(
147 self.embeddings_constraint
148 ),
149 "mask_zero": self.mask_zero,
150 "input_length": self.input_length,
151 "combiner": self.combiner,
152 }
153 base_config = super(EmbeddingBag, self).get_config()
154 return dict(list(base_config.items()) + list(config.items()))
155
[end of tensorflow_addons/layers/embedding_bag.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/tensorflow_addons/layers/embedding_bag.py b/tensorflow_addons/layers/embedding_bag.py
--- a/tensorflow_addons/layers/embedding_bag.py
+++ b/tensorflow_addons/layers/embedding_bag.py
@@ -49,8 +49,13 @@
Returns:
A `Tensor` of the format specified by `data_format`.
"""
- if weights is None:
+ if weights is None and combiner == "sum":
weights = tf.ones_like(indices, dtype=params.dtype)
+ elif weights is None and combiner == "mean":
+ weights = tf.ones_like(indices, dtype=params.dtype) / tf.cast(
+ tf.shape(indices)[1], params.dtype
+ )
+ combiner = "sum"
elif combiner != "sum":
raise RuntimeError(
"Combiner mode must be 'sum' when weights are supplied to EmbeddingBag!"
| {"golden_diff": "diff --git a/tensorflow_addons/layers/embedding_bag.py b/tensorflow_addons/layers/embedding_bag.py\n--- a/tensorflow_addons/layers/embedding_bag.py\n+++ b/tensorflow_addons/layers/embedding_bag.py\n@@ -49,8 +49,13 @@\n Returns:\n A `Tensor` of the format specified by `data_format`.\n \"\"\"\n- if weights is None:\n+ if weights is None and combiner == \"sum\":\n weights = tf.ones_like(indices, dtype=params.dtype)\n+ elif weights is None and combiner == \"mean\":\n+ weights = tf.ones_like(indices, dtype=params.dtype) / tf.cast(\n+ tf.shape(indices)[1], params.dtype\n+ )\n+ combiner = \"sum\"\n elif combiner != \"sum\":\n raise RuntimeError(\n \"Combiner mode must be 'sum' when weights are supplied to EmbeddingBag!\"\n", "issue": "Embedding Bag Fails GPU Testing\nIt looks like our new layer is failing for GPU tests. \r\n\r\nhttps://github.com/tensorflow/addons/pull/2501\r\n\r\nhttps://source.cloud.google.com/results/invocations/42c93476-b0f7-4192-9da5-0dac23c4c92b/targets/tensorflow_addons%2Fubuntu%2Fgpu%2Fpy3%2Fpresubmit/log\r\n\r\n@Rocketknight1 when time allows could you please take a look? We can trigger GPU testing on any PR you submit.\r\n\r\n\r\ne.g.\r\n```\r\ntensorflow_addons/layers/tests/embedding_bag_test.py:120:\r\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _\r\n\r\na = array([[0.40625, 0.40625, 0.40625, ..., 0.40625, 0.40625, 0.40625],\r\n [0.25 , 0.25 , 0.25 , ..., 0.25 , 0...0.34375, 0.34375, ..., 0.34375, 0.34375, 0.34375],\r\n [0.21875, 0.21875, 0.21875, ..., 0.21875, 0.21875, 0.21875]])\r\nb = array([[13., 13., 13., ..., 13., 13., 13.],\r\n [ 8., 8., 8., ..., 8., 8., 8.],\r\n [ 7., 7., 7., ..., 7... 7., 7., ..., 7., 7., 7.],\r\n [11., 11., 11., ..., 11., 11., 11.],\r\n [ 7., 7., 7., ..., 7., 7., 7.]])\r\nrtol = 1e-06, atol = 1e-06, float_rtol = 1e-06, float_atol = 1e-06\r\nhalf_rtol = 0.001, half_atol = 0.001, bfloat16_rtol = 0.01, bfloat16_atol = 0.01\r\n\r\n def assert_allclose_according_to_type(\r\n a,\r\n b,\r\n rtol=1e-6,\r\n atol=1e-6,\r\n float_rtol=1e-6,\r\n float_atol=1e-6,\r\n half_rtol=1e-3,\r\n half_atol=1e-3,\r\n bfloat16_rtol=1e-2,\r\n bfloat16_atol=1e-2,\r\n ):\r\n \"\"\"\r\n Similar to tf.test.TestCase.assertAllCloseAccordingToType()\r\n but this doesn't need a subclassing to run.\r\n \"\"\"\r\n a = np.array(a)\r\n b = np.array(b)\r\n # types with lower tol are put later to overwrite previous ones.\r\n if (\r\n a.dtype == np.float32\r\n or b.dtype == np.float32\r\n or a.dtype == np.complex64\r\n or b.dtype == np.complex64\r\n ):\r\n rtol = max(rtol, float_rtol)\r\n atol = max(atol, float_atol)\r\n if a.dtype == np.float16 or b.dtype == np.float16:\r\n rtol = max(rtol, half_rtol)\r\n atol = max(atol, half_atol)\r\n if a.dtype == tf.bfloat16.as_numpy_dtype or b.dtype == tf.bfloat16.as_numpy_dtype:\r\n rtol = max(rtol, bfloat16_rtol)\r\n atol = max(atol, bfloat16_atol)\r\n\r\n> np.testing.assert_allclose(a, b, rtol=rtol, atol=atol)\r\nE AssertionError: \r\nE Not equal to tolerance rtol=1e-06, atol=1e-06\r\nE \r\nE Mismatched elements: 1008 / 1008 (100%)\r\nE Max absolute difference: 14.53125\r\nE Max relative difference: 0.96875\r\nE x: array([[0.40625, 0.40625, 0.40625, ..., 0.40625, 0.40625, 0.40625],\r\nE [0.25 , 0.25 , 0.25 , ..., 0.25 , 0.25 , 0.25 ],\r\nE [0.21875, 0.21875, 0.21875, ..., 0.21875, 0.21875, 0.21875],...\r\nE y: array([[13., 13., 13., ..., 13., 13., 13.],\r\nE [ 8., 8., 8., ..., 8., 8., 8.],\r\nE [ 7., 7., 7., ..., 7., 7., 7.],...\r\n```\n", "before_files": [{"content": "# Copyright 2021 The TensorFlow Authors. All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n# ==============================================================================\n\nimport tensorflow as tf\nfrom typeguard import typechecked\n\nfrom tensorflow_addons.utils.types import Constraint, Initializer, Regularizer\nfrom tensorflow_addons.utils.resource_loader import LazySO\n\n_embedding_bag_so = LazySO(\"custom_ops/layers/_embedding_bag_ops.so\")\n\n\ndef _embedding_bag(\n indices,\n params,\n weights=None,\n combiner=\"sum\",\n name=None,\n):\n \"\"\"EmbeddingBag computation.\n\n See [PyTorch op](https://pytorch.org/docs/stable/generated/torch.nn.EmbeddingBag.html).\n\n Equivalent to tf.gather() followed by tf.reduce_{sum,mean}() across the last dimension, with optional\n weights. Fusing these into a single op has massive benefits for execution speed and particularly\n memory usage, as the intermediate output of the gather never needs to be materialized.\n\n Args:\n indices: An int32 or int64 `Tensor` of the indices to gather from\n `params`. Must be at least 2-dimensional, as the last dimension\n will be summed out. Maximum value must be less than params.shape[0].\n params: A float32 `Tensor` from which to gather params. Must be rank 2.\n weights: A float32 `Tensor` of weights which will be applied to each of\n the gathered embedding vectors before the sum step.\n name: A name for the operation (optional).\n\n Returns:\n A `Tensor` of the format specified by `data_format`.\n \"\"\"\n if weights is None:\n weights = tf.ones_like(indices, dtype=params.dtype)\n elif combiner != \"sum\":\n raise RuntimeError(\n \"Combiner mode must be 'sum' when weights are supplied to EmbeddingBag!\"\n )\n\n return _embedding_bag_so.ops.addons_embedding_bag(\n indices, params, weights, combiner=combiner.upper(), name=name\n )\n\n\[email protected](\"Addons>EmbeddingBag\")\ndef _embedding_bag_grad(op, grads):\n indices, params, weights = op.inputs[:3]\n combiner = op.get_attr(\"combiner\")\n value_grads, weight_grads = _embedding_bag_so.ops.addons_embedding_bag_grad(\n indices, params, weights, grads, combiner=combiner\n )\n return [None, value_grads, weight_grads]\n\n\[email protected]_keras_serializable(package=\"Addons\")\nclass EmbeddingBag(tf.keras.layers.Layer):\n \"\"\"EmbeddingBag Layer.\n\n See [PyTorch op](https://pytorch.org/docs/stable/generated/torch.nn.EmbeddingBag.html).\n\n Equivalent to tf.gather() followed by tf.reduce_sum() across the last dimension, with optional\n weights. Fusing these into a single op has massive benefits for execution speed and particularly\n memory usage, as the intermediate output of the gather never needs to be materialized.\n\n Input Shapes:\n indices: An int32 or int64 `Tensor` of the indices to gather from\n `params`. Must be at least 2-dimensional, as the last dimension\n will be summed out. Maximum value must be less than params.shape[0].\n params: A float32 `Tensor` from which to gather params. Must be rank 2.\n weights: A float32 `Tensor` of weights which will be applied to each of\n the gathered embedding vectors before the sum step.\n\n Output shape:\n indices.shape[:-1], params.shape[-1]\n \"\"\"\n\n @typechecked\n def __init__(\n self,\n input_dim: int,\n output_dim: int,\n embeddings_initializer: Initializer = \"uniform\",\n embeddings_regularizer: Regularizer = None,\n embeddings_constraint: Constraint = None,\n mask_zero: bool = False,\n combiner: str = \"sum\",\n **kwargs,\n ):\n super(EmbeddingBag, self).__init__(**kwargs)\n if input_dim <= 0 or output_dim <= 0:\n raise ValueError(\n \"Both `input_dim` and `output_dim` should be positive, \"\n \"found input_dim {} and output_dim {}\".format(input_dim, output_dim)\n )\n self.input_dim = input_dim\n self.output_dim = output_dim\n self.embeddings_initializer = tf.keras.initializers.get(embeddings_initializer)\n self.embeddings_regularizer = tf.keras.regularizers.get(embeddings_regularizer)\n self.embeddings_constraint = tf.keras.constraints.get(embeddings_constraint)\n self.mask_zero = mask_zero\n self.supports_masking = mask_zero\n self.combiner = combiner\n\n def build(self, input_shape):\n self.embeddings = self.add_weight(\n shape=(self.input_dim, self.output_dim),\n name=\"embeddings\",\n initializer=self.embeddings_initializer,\n regularizer=self.embeddings_regularizer,\n constraint=self.embeddings_constraint,\n )\n self.built = True\n\n def call(self, indices, weights=None):\n return _embedding_bag(indices, self.embeddings, weights, combiner=self.combiner)\n\n def get_config(self):\n config = {\n \"input_dim\": self.input_dim,\n \"output_dim\": self.output_dim,\n \"embeddings_initializer\": tf.keras.initializers.serialize(\n self.embeddings_initializer\n ),\n \"embeddings_regularizer\": tf.keras.regularizers.serialize(\n self.embeddings_regularizer\n ),\n \"embeddings_constraint\": tf.keras.constraints.serialize(\n self.embeddings_constraint\n ),\n \"mask_zero\": self.mask_zero,\n \"input_length\": self.input_length,\n \"combiner\": self.combiner,\n }\n base_config = super(EmbeddingBag, self).get_config()\n return dict(list(base_config.items()) + list(config.items()))\n", "path": "tensorflow_addons/layers/embedding_bag.py"}]} | 3,583 | 204 |
gh_patches_debug_22161 | rasdani/github-patches | git_diff | ray-project__ray-10874 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
[autoscaler] Inconsistent reporting of worker node types
On master, it seems I have a cluster with a cpu_4_ondemand head node and cpu_64_ondemand worker (68 CPUs in total), but somehow the debug string is reporting 2 workers of cpu_64_ondemand (which is wrong, since there is only 1 worker node, and the head node is cpu_4_ondemand).
YAML: https://gist.github.com/ericl/f9c32b8bbbe4e1aed43899832730f70d (switching the Ray version to latest wheel)
```
- ResourceUsage: 0.0/68.0 CPU, 0.0/1.0 Custom1, 0.0 GiB/198.65 GiB memory, 0.0
GiB/59.19 GiB object_store_memory
- TimeSinceLastHeartbeat: Min=0 Mean=0 Max=0
Worker node types:
- cpu_64_ondemand: 2
```
cc @wuisawesome
</issue>
<code>
[start of python/ray/autoscaler/resource_demand_scheduler.py]
1 """Implements multi-node-type autoscaling.
2
3 This file implements an autoscaling algorithm that is aware of multiple node
4 types (e.g., example-multi-node-type.yaml). The Ray autoscaler will pass in
5 a vector of resource shape demands, and the resource demand scheduler will
6 return a list of node types that can satisfy the demands given constraints
7 (i.e., reverse bin packing).
8 """
9
10 import copy
11 import numpy as np
12 import logging
13 import collections
14 from typing import List, Dict, Tuple
15
16 from ray.autoscaler.node_provider import NodeProvider
17 from ray.autoscaler.tags import TAG_RAY_USER_NODE_TYPE, NODE_KIND_UNMANAGED
18
19 logger = logging.getLogger(__name__)
20
21 # e.g., m4.16xlarge.
22 NodeType = str
23
24 # e.g., {"resources": ..., "max_workers": ...}.
25 NodeTypeConfigDict = str
26
27 # e.g., {"GPU": 1}.
28 ResourceDict = str
29
30 # e.g., IP address of the node.
31 NodeID = str
32
33
34 class ResourceDemandScheduler:
35 def __init__(self, provider: NodeProvider,
36 node_types: Dict[NodeType, NodeTypeConfigDict],
37 max_workers: int):
38 self.provider = provider
39 self.node_types = node_types
40 self.max_workers = max_workers
41
42 def get_nodes_to_launch(self, nodes: List[NodeID],
43 pending_nodes: Dict[NodeType, int],
44 resource_demands: List[ResourceDict],
45 usage_by_ip: Dict[str, ResourceDict]
46 ) -> List[Tuple[NodeType, int]]:
47 """Given resource demands, return node types to add to the cluster.
48
49 This method:
50 (1) calculates the resources present in the cluster.
51 (2) calculates the unfulfilled resource bundles.
52 (3) calculates which nodes need to be launched to fulfill all
53 the bundle requests, subject to max_worker constraints.
54
55 Args:
56 nodes: List of existing nodes in the cluster.
57 pending_nodes: Summary of node types currently being launched.
58 resource_demands: Vector of resource demands from the scheduler.
59 """
60
61 if resource_demands is None:
62 logger.info("No resource demands")
63 return []
64
65 node_resources, node_type_counts = self.calculate_node_resources(
66 nodes, pending_nodes, usage_by_ip)
67
68 logger.info("Cluster resources: {}".format(node_resources))
69 logger.info("Node counts: {}".format(node_type_counts))
70
71 unfulfilled = get_bin_pack_residual(node_resources, resource_demands)
72 logger.info("Resource demands: {}".format(resource_demands))
73 logger.info("Unfulfilled demands: {}".format(unfulfilled))
74
75 nodes = get_nodes_for(
76 self.node_types, node_type_counts,
77 self.max_workers - len(nodes) - sum(pending_nodes.values()),
78 unfulfilled)
79 logger.info("Node requests: {}".format(nodes))
80 return nodes
81
82 def calculate_node_resources(
83 self, nodes: List[NodeID], pending_nodes: Dict[NodeID, int],
84 usage_by_ip: Dict[str, ResourceDict]
85 ) -> (List[ResourceDict], Dict[NodeType, int]):
86 """Returns node resource list and node type counts."""
87
88 node_resources = []
89 node_type_counts = collections.defaultdict(int)
90
91 def add_node(node_type, available_resources=None):
92 if node_type not in self.node_types:
93 logger.warn(
94 f"Missing entry for node_type {node_type} in "
95 f"cluster config: {self.node_types} under entry "
96 f"available_node_types. This node's resources will be "
97 f"ignored. If you are using an unmanaged node, manually "
98 f"set the user_node_type tag to \"{NODE_KIND_UNMANAGED}\""
99 f"in your cloud provider's management console.")
100 return None
101 # Careful not to include the same dict object multiple times.
102 available = copy.deepcopy(self.node_types[node_type]["resources"])
103 # If available_resources is None this might be because the node is
104 # no longer pending, but the raylet hasn't sent a heartbeat to gcs
105 # yet.
106 if available_resources is not None:
107 available = copy.deepcopy(available_resources)
108
109 node_resources.append(available)
110 node_type_counts[node_type] += 1
111
112 for node_id in nodes:
113 tags = self.provider.node_tags(node_id)
114 if TAG_RAY_USER_NODE_TYPE in tags:
115 node_type = tags[TAG_RAY_USER_NODE_TYPE]
116 node_type_counts[node_type] += 1
117 ip = self.provider.internal_ip(node_id)
118 available_resources = usage_by_ip.get(ip)
119 add_node(node_type, available_resources)
120
121 for node_type, count in pending_nodes.items():
122 for _ in range(count):
123 add_node(node_type)
124
125 return node_resources, node_type_counts
126
127 def debug_string(self, nodes: List[NodeID],
128 pending_nodes: Dict[NodeID, int],
129 usage_by_ip: Dict[str, ResourceDict]) -> str:
130 print(f"{usage_by_ip}")
131 node_resources, node_type_counts = self.calculate_node_resources(
132 nodes, pending_nodes, usage_by_ip)
133
134 out = "Worker node types:"
135 for node_type, count in node_type_counts.items():
136 out += "\n - {}: {}".format(node_type, count)
137 if pending_nodes.get(node_type):
138 out += " ({} pending)".format(pending_nodes[node_type])
139
140 return out
141
142
143 def get_nodes_for(node_types: Dict[NodeType, NodeTypeConfigDict],
144 existing_nodes: Dict[NodeType, int], max_to_add: int,
145 resources: List[ResourceDict]) -> List[Tuple[NodeType, int]]:
146 """Determine nodes to add given resource demands and constraints.
147
148 Args:
149 node_types: node types config.
150 existing_nodes: counts of existing nodes already launched.
151 This sets constraints on the number of new nodes to add.
152 max_to_add: global constraint on nodes to add.
153 resources: resource demands to fulfill.
154
155 Returns:
156 List of nodes types and count to add.
157 """
158 nodes_to_add = collections.defaultdict(int)
159 allocated_resources = []
160
161 while resources and sum(nodes_to_add.values()) < max_to_add:
162 utilization_scores = []
163 for node_type in node_types:
164 if (existing_nodes.get(node_type, 0) + nodes_to_add.get(
165 node_type, 0) >= node_types[node_type]["max_workers"]):
166 continue
167 node_resources = node_types[node_type]["resources"]
168 score = _utilization_score(node_resources, resources)
169 if score is not None:
170 utilization_scores.append((score, node_type))
171
172 # Give up, no feasible node.
173 if not utilization_scores:
174 logger.info(
175 "No feasible node type to add for {}".format(resources))
176 break
177
178 utilization_scores = sorted(utilization_scores, reverse=True)
179 best_node_type = utilization_scores[0][1]
180 nodes_to_add[best_node_type] += 1
181 allocated_resources.append(node_types[best_node_type]["resources"])
182 residual = get_bin_pack_residual(allocated_resources[-1:], resources)
183 assert len(residual) < len(resources), (resources, residual)
184 resources = residual
185
186 return list(nodes_to_add.items())
187
188
189 def _utilization_score(node_resources: ResourceDict,
190 resources: ResourceDict) -> float:
191 remaining = copy.deepcopy(node_resources)
192
193 fittable = []
194 for r in resources:
195 if _fits(remaining, r):
196 fittable.append(r)
197 _inplace_subtract(remaining, r)
198 if not fittable:
199 return None
200
201 util_by_resources = []
202 for k, v in node_resources.items():
203 util = (v - remaining[k]) / v
204 util_by_resources.append(v * (util**3))
205
206 # Prioritize using all resources first, then prioritize overall balance
207 # of multiple resources.
208 return (min(util_by_resources), np.mean(util_by_resources))
209
210
211 def get_bin_pack_residual(
212 node_resources: List[ResourceDict],
213 resource_demands: List[ResourceDict]) -> List[ResourceDict]:
214 """Return a subset of resource_demands that cannot fit in the cluster.
215
216 TODO(ekl): this currently does not guarantee the resources will be packed
217 correctly by the Ray scheduler. This is only possible once the Ray backend
218 supports a placement groups API.
219
220 Args:
221 node_resources (List[ResourceDict]): List of resources per node.
222 resource_demands (List[ResourceDict]): List of resource bundles that
223 need to be bin packed onto the nodes.
224
225 Returns:
226 List[ResourceDict] the residual list resources that do not fit.
227 """
228
229 unfulfilled = []
230
231 # A most naive bin packing algorithm.
232 nodes = copy.deepcopy(node_resources)
233 for demand in resource_demands:
234 found = False
235 for node in nodes:
236 if _fits(node, demand):
237 _inplace_subtract(node, demand)
238 found = True
239 break
240 if not found:
241 unfulfilled.append(demand)
242
243 return unfulfilled
244
245
246 def _fits(node: ResourceDict, resources: ResourceDict) -> bool:
247 for k, v in resources.items():
248 if v > node.get(k, 0.0):
249 return False
250 return True
251
252
253 def _inplace_subtract(node: ResourceDict, resources: ResourceDict) -> None:
254 for k, v in resources.items():
255 assert k in node, (k, node)
256 node[k] -= v
257 assert node[k] >= 0.0, (node, k, v)
258
[end of python/ray/autoscaler/resource_demand_scheduler.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/python/ray/autoscaler/resource_demand_scheduler.py b/python/ray/autoscaler/resource_demand_scheduler.py
--- a/python/ray/autoscaler/resource_demand_scheduler.py
+++ b/python/ray/autoscaler/resource_demand_scheduler.py
@@ -56,6 +56,7 @@
nodes: List of existing nodes in the cluster.
pending_nodes: Summary of node types currently being launched.
resource_demands: Vector of resource demands from the scheduler.
+ usage_by_ip: Mapping from ip to available resources.
"""
if resource_demands is None:
@@ -113,7 +114,6 @@
tags = self.provider.node_tags(node_id)
if TAG_RAY_USER_NODE_TYPE in tags:
node_type = tags[TAG_RAY_USER_NODE_TYPE]
- node_type_counts[node_type] += 1
ip = self.provider.internal_ip(node_id)
available_resources = usage_by_ip.get(ip)
add_node(node_type, available_resources)
| {"golden_diff": "diff --git a/python/ray/autoscaler/resource_demand_scheduler.py b/python/ray/autoscaler/resource_demand_scheduler.py\n--- a/python/ray/autoscaler/resource_demand_scheduler.py\n+++ b/python/ray/autoscaler/resource_demand_scheduler.py\n@@ -56,6 +56,7 @@\n nodes: List of existing nodes in the cluster.\n pending_nodes: Summary of node types currently being launched.\n resource_demands: Vector of resource demands from the scheduler.\n+ usage_by_ip: Mapping from ip to available resources.\n \"\"\"\n \n if resource_demands is None:\n@@ -113,7 +114,6 @@\n tags = self.provider.node_tags(node_id)\n if TAG_RAY_USER_NODE_TYPE in tags:\n node_type = tags[TAG_RAY_USER_NODE_TYPE]\n- node_type_counts[node_type] += 1\n ip = self.provider.internal_ip(node_id)\n available_resources = usage_by_ip.get(ip)\n add_node(node_type, available_resources)\n", "issue": "[autoscaler] Inconsistent reporting of worker node types\nOn master, it seems I have a cluster with a cpu_4_ondemand head node and cpu_64_ondemand worker (68 CPUs in total), but somehow the debug string is reporting 2 workers of cpu_64_ondemand (which is wrong, since there is only 1 worker node, and the head node is cpu_4_ondemand).\r\n\r\nYAML: https://gist.github.com/ericl/f9c32b8bbbe4e1aed43899832730f70d (switching the Ray version to latest wheel)\r\n\r\n```\r\n - ResourceUsage: 0.0/68.0 CPU, 0.0/1.0 Custom1, 0.0 GiB/198.65 GiB memory, 0.0\r\nGiB/59.19 GiB object_store_memory\r\n - TimeSinceLastHeartbeat: Min=0 Mean=0 Max=0\r\nWorker node types:\r\n - cpu_64_ondemand: 2\r\n\r\n```\r\n\r\ncc @wuisawesome \n", "before_files": [{"content": "\"\"\"Implements multi-node-type autoscaling.\n\nThis file implements an autoscaling algorithm that is aware of multiple node\ntypes (e.g., example-multi-node-type.yaml). The Ray autoscaler will pass in\na vector of resource shape demands, and the resource demand scheduler will\nreturn a list of node types that can satisfy the demands given constraints\n(i.e., reverse bin packing).\n\"\"\"\n\nimport copy\nimport numpy as np\nimport logging\nimport collections\nfrom typing import List, Dict, Tuple\n\nfrom ray.autoscaler.node_provider import NodeProvider\nfrom ray.autoscaler.tags import TAG_RAY_USER_NODE_TYPE, NODE_KIND_UNMANAGED\n\nlogger = logging.getLogger(__name__)\n\n# e.g., m4.16xlarge.\nNodeType = str\n\n# e.g., {\"resources\": ..., \"max_workers\": ...}.\nNodeTypeConfigDict = str\n\n# e.g., {\"GPU\": 1}.\nResourceDict = str\n\n# e.g., IP address of the node.\nNodeID = str\n\n\nclass ResourceDemandScheduler:\n def __init__(self, provider: NodeProvider,\n node_types: Dict[NodeType, NodeTypeConfigDict],\n max_workers: int):\n self.provider = provider\n self.node_types = node_types\n self.max_workers = max_workers\n\n def get_nodes_to_launch(self, nodes: List[NodeID],\n pending_nodes: Dict[NodeType, int],\n resource_demands: List[ResourceDict],\n usage_by_ip: Dict[str, ResourceDict]\n ) -> List[Tuple[NodeType, int]]:\n \"\"\"Given resource demands, return node types to add to the cluster.\n\n This method:\n (1) calculates the resources present in the cluster.\n (2) calculates the unfulfilled resource bundles.\n (3) calculates which nodes need to be launched to fulfill all\n the bundle requests, subject to max_worker constraints.\n\n Args:\n nodes: List of existing nodes in the cluster.\n pending_nodes: Summary of node types currently being launched.\n resource_demands: Vector of resource demands from the scheduler.\n \"\"\"\n\n if resource_demands is None:\n logger.info(\"No resource demands\")\n return []\n\n node_resources, node_type_counts = self.calculate_node_resources(\n nodes, pending_nodes, usage_by_ip)\n\n logger.info(\"Cluster resources: {}\".format(node_resources))\n logger.info(\"Node counts: {}\".format(node_type_counts))\n\n unfulfilled = get_bin_pack_residual(node_resources, resource_demands)\n logger.info(\"Resource demands: {}\".format(resource_demands))\n logger.info(\"Unfulfilled demands: {}\".format(unfulfilled))\n\n nodes = get_nodes_for(\n self.node_types, node_type_counts,\n self.max_workers - len(nodes) - sum(pending_nodes.values()),\n unfulfilled)\n logger.info(\"Node requests: {}\".format(nodes))\n return nodes\n\n def calculate_node_resources(\n self, nodes: List[NodeID], pending_nodes: Dict[NodeID, int],\n usage_by_ip: Dict[str, ResourceDict]\n ) -> (List[ResourceDict], Dict[NodeType, int]):\n \"\"\"Returns node resource list and node type counts.\"\"\"\n\n node_resources = []\n node_type_counts = collections.defaultdict(int)\n\n def add_node(node_type, available_resources=None):\n if node_type not in self.node_types:\n logger.warn(\n f\"Missing entry for node_type {node_type} in \"\n f\"cluster config: {self.node_types} under entry \"\n f\"available_node_types. This node's resources will be \"\n f\"ignored. If you are using an unmanaged node, manually \"\n f\"set the user_node_type tag to \\\"{NODE_KIND_UNMANAGED}\\\"\"\n f\"in your cloud provider's management console.\")\n return None\n # Careful not to include the same dict object multiple times.\n available = copy.deepcopy(self.node_types[node_type][\"resources\"])\n # If available_resources is None this might be because the node is\n # no longer pending, but the raylet hasn't sent a heartbeat to gcs\n # yet.\n if available_resources is not None:\n available = copy.deepcopy(available_resources)\n\n node_resources.append(available)\n node_type_counts[node_type] += 1\n\n for node_id in nodes:\n tags = self.provider.node_tags(node_id)\n if TAG_RAY_USER_NODE_TYPE in tags:\n node_type = tags[TAG_RAY_USER_NODE_TYPE]\n node_type_counts[node_type] += 1\n ip = self.provider.internal_ip(node_id)\n available_resources = usage_by_ip.get(ip)\n add_node(node_type, available_resources)\n\n for node_type, count in pending_nodes.items():\n for _ in range(count):\n add_node(node_type)\n\n return node_resources, node_type_counts\n\n def debug_string(self, nodes: List[NodeID],\n pending_nodes: Dict[NodeID, int],\n usage_by_ip: Dict[str, ResourceDict]) -> str:\n print(f\"{usage_by_ip}\")\n node_resources, node_type_counts = self.calculate_node_resources(\n nodes, pending_nodes, usage_by_ip)\n\n out = \"Worker node types:\"\n for node_type, count in node_type_counts.items():\n out += \"\\n - {}: {}\".format(node_type, count)\n if pending_nodes.get(node_type):\n out += \" ({} pending)\".format(pending_nodes[node_type])\n\n return out\n\n\ndef get_nodes_for(node_types: Dict[NodeType, NodeTypeConfigDict],\n existing_nodes: Dict[NodeType, int], max_to_add: int,\n resources: List[ResourceDict]) -> List[Tuple[NodeType, int]]:\n \"\"\"Determine nodes to add given resource demands and constraints.\n\n Args:\n node_types: node types config.\n existing_nodes: counts of existing nodes already launched.\n This sets constraints on the number of new nodes to add.\n max_to_add: global constraint on nodes to add.\n resources: resource demands to fulfill.\n\n Returns:\n List of nodes types and count to add.\n \"\"\"\n nodes_to_add = collections.defaultdict(int)\n allocated_resources = []\n\n while resources and sum(nodes_to_add.values()) < max_to_add:\n utilization_scores = []\n for node_type in node_types:\n if (existing_nodes.get(node_type, 0) + nodes_to_add.get(\n node_type, 0) >= node_types[node_type][\"max_workers\"]):\n continue\n node_resources = node_types[node_type][\"resources\"]\n score = _utilization_score(node_resources, resources)\n if score is not None:\n utilization_scores.append((score, node_type))\n\n # Give up, no feasible node.\n if not utilization_scores:\n logger.info(\n \"No feasible node type to add for {}\".format(resources))\n break\n\n utilization_scores = sorted(utilization_scores, reverse=True)\n best_node_type = utilization_scores[0][1]\n nodes_to_add[best_node_type] += 1\n allocated_resources.append(node_types[best_node_type][\"resources\"])\n residual = get_bin_pack_residual(allocated_resources[-1:], resources)\n assert len(residual) < len(resources), (resources, residual)\n resources = residual\n\n return list(nodes_to_add.items())\n\n\ndef _utilization_score(node_resources: ResourceDict,\n resources: ResourceDict) -> float:\n remaining = copy.deepcopy(node_resources)\n\n fittable = []\n for r in resources:\n if _fits(remaining, r):\n fittable.append(r)\n _inplace_subtract(remaining, r)\n if not fittable:\n return None\n\n util_by_resources = []\n for k, v in node_resources.items():\n util = (v - remaining[k]) / v\n util_by_resources.append(v * (util**3))\n\n # Prioritize using all resources first, then prioritize overall balance\n # of multiple resources.\n return (min(util_by_resources), np.mean(util_by_resources))\n\n\ndef get_bin_pack_residual(\n node_resources: List[ResourceDict],\n resource_demands: List[ResourceDict]) -> List[ResourceDict]:\n \"\"\"Return a subset of resource_demands that cannot fit in the cluster.\n\n TODO(ekl): this currently does not guarantee the resources will be packed\n correctly by the Ray scheduler. This is only possible once the Ray backend\n supports a placement groups API.\n\n Args:\n node_resources (List[ResourceDict]): List of resources per node.\n resource_demands (List[ResourceDict]): List of resource bundles that\n need to be bin packed onto the nodes.\n\n Returns:\n List[ResourceDict] the residual list resources that do not fit.\n \"\"\"\n\n unfulfilled = []\n\n # A most naive bin packing algorithm.\n nodes = copy.deepcopy(node_resources)\n for demand in resource_demands:\n found = False\n for node in nodes:\n if _fits(node, demand):\n _inplace_subtract(node, demand)\n found = True\n break\n if not found:\n unfulfilled.append(demand)\n\n return unfulfilled\n\n\ndef _fits(node: ResourceDict, resources: ResourceDict) -> bool:\n for k, v in resources.items():\n if v > node.get(k, 0.0):\n return False\n return True\n\n\ndef _inplace_subtract(node: ResourceDict, resources: ResourceDict) -> None:\n for k, v in resources.items():\n assert k in node, (k, node)\n node[k] -= v\n assert node[k] >= 0.0, (node, k, v)\n", "path": "python/ray/autoscaler/resource_demand_scheduler.py"}]} | 3,519 | 213 |
gh_patches_debug_7885 | rasdani/github-patches | git_diff | pytorch__vision-5213 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Add tests for prototype utilities
Perhaps we should add tests for `sequence_to_str`, so as to ensure that our error message are properly formatted ?
Also nit but if we're going to have such a helper, we could handle the case `a, and b` -> `a and b` (i.e. remove the comma if len == 2
_Originally posted by @NicolasHug in https://github.com/pytorch/vision/pull/5187#discussion_r784852697_
cc @bjuncek
</issue>
<code>
[start of torchvision/prototype/utils/_internal.py]
1 import collections.abc
2 import difflib
3 import enum
4 import functools
5 import inspect
6 import os
7 import os.path
8 import textwrap
9 import warnings
10 from typing import Collection, Sequence, Callable, Any, Iterator, NoReturn, Mapping, TypeVar, Iterable, Tuple, cast
11
12 __all__ = [
13 "StrEnum",
14 "sequence_to_str",
15 "add_suggestion",
16 "FrozenMapping",
17 "make_repr",
18 "FrozenBunch",
19 "kwonly_to_pos_or_kw",
20 ]
21
22
23 class StrEnumMeta(enum.EnumMeta):
24 def __getitem__(self, item):
25 return super().__getitem__(item.upper() if isinstance(item, str) else item)
26
27
28 class StrEnum(enum.Enum, metaclass=StrEnumMeta):
29 pass
30
31
32 def sequence_to_str(seq: Sequence, separate_last: str = "") -> str:
33 if len(seq) == 1:
34 return f"'{seq[0]}'"
35
36 return f"""'{"', '".join([str(item) for item in seq[:-1]])}', {separate_last}'{seq[-1]}'"""
37
38
39 def add_suggestion(
40 msg: str,
41 *,
42 word: str,
43 possibilities: Collection[str],
44 close_match_hint: Callable[[str], str] = lambda close_match: f"Did you mean '{close_match}'?",
45 alternative_hint: Callable[
46 [Sequence[str]], str
47 ] = lambda possibilities: f"Can be {sequence_to_str(possibilities, separate_last='or ')}.",
48 ) -> str:
49 if not isinstance(possibilities, collections.abc.Sequence):
50 possibilities = sorted(possibilities)
51 suggestions = difflib.get_close_matches(word, possibilities, 1)
52 hint = close_match_hint(suggestions[0]) if suggestions else alternative_hint(possibilities)
53 if not hint:
54 return msg
55
56 return f"{msg.strip()} {hint}"
57
58
59 K = TypeVar("K")
60 D = TypeVar("D")
61
62
63 class FrozenMapping(Mapping[K, D]):
64 def __init__(self, *args: Any, **kwargs: Any) -> None:
65 data = dict(*args, **kwargs)
66 self.__dict__["__data__"] = data
67 self.__dict__["__final_hash__"] = hash(tuple(data.items()))
68
69 def __getitem__(self, item: K) -> D:
70 return cast(Mapping[K, D], self.__dict__["__data__"])[item]
71
72 def __iter__(self) -> Iterator[K]:
73 return iter(self.__dict__["__data__"].keys())
74
75 def __len__(self) -> int:
76 return len(self.__dict__["__data__"])
77
78 def __immutable__(self) -> NoReturn:
79 raise RuntimeError(f"'{type(self).__name__}' object is immutable")
80
81 def __setitem__(self, key: K, value: Any) -> NoReturn:
82 self.__immutable__()
83
84 def __delitem__(self, key: K) -> NoReturn:
85 self.__immutable__()
86
87 def __hash__(self) -> int:
88 return cast(int, self.__dict__["__final_hash__"])
89
90 def __eq__(self, other: Any) -> bool:
91 if not isinstance(other, FrozenMapping):
92 return NotImplemented
93
94 return hash(self) == hash(other)
95
96 def __repr__(self) -> str:
97 return repr(self.__dict__["__data__"])
98
99
100 def make_repr(name: str, items: Iterable[Tuple[str, Any]]) -> str:
101 def to_str(sep: str) -> str:
102 return sep.join([f"{key}={value}" for key, value in items])
103
104 prefix = f"{name}("
105 postfix = ")"
106 body = to_str(", ")
107
108 line_length = int(os.environ.get("COLUMNS", 80))
109 body_too_long = (len(prefix) + len(body) + len(postfix)) > line_length
110 multiline_body = len(str(body).splitlines()) > 1
111 if not (body_too_long or multiline_body):
112 return prefix + body + postfix
113
114 body = textwrap.indent(to_str(",\n"), " " * 2)
115 return f"{prefix}\n{body}\n{postfix}"
116
117
118 class FrozenBunch(FrozenMapping):
119 def __getattr__(self, name: str) -> Any:
120 try:
121 return self[name]
122 except KeyError as error:
123 raise AttributeError(f"'{type(self).__name__}' object has no attribute '{name}'") from error
124
125 def __setattr__(self, key: Any, value: Any) -> NoReturn:
126 self.__immutable__()
127
128 def __delattr__(self, item: Any) -> NoReturn:
129 self.__immutable__()
130
131 def __repr__(self) -> str:
132 return make_repr(type(self).__name__, self.items())
133
134
135 def kwonly_to_pos_or_kw(fn: Callable[..., D]) -> Callable[..., D]:
136 """Decorates a function that uses keyword only parameters to also allow them being passed as positionals.
137
138 For example, consider the use case of changing the signature of ``old_fn`` into the one from ``new_fn``:
139
140 .. code::
141
142 def old_fn(foo, bar, baz=None):
143 ...
144
145 def new_fn(foo, *, bar, baz=None):
146 ...
147
148 Calling ``old_fn("foo", "bar, "baz")`` was valid, but the same call is no longer valid with ``new_fn``. To keep BC
149 and at the same time warn the user of the deprecation, this decorator can be used:
150
151 .. code::
152
153 @kwonly_to_pos_or_kw
154 def new_fn(foo, *, bar, baz=None):
155 ...
156
157 new_fn("foo", "bar, "baz")
158 """
159 params = inspect.signature(fn).parameters
160
161 try:
162 keyword_only_start_idx = next(
163 idx for idx, param in enumerate(params.values()) if param.kind == param.KEYWORD_ONLY
164 )
165 except StopIteration:
166 raise TypeError(f"Found no keyword-only parameter on function '{fn.__name__}'") from None
167
168 keyword_only_params = tuple(inspect.signature(fn).parameters)[keyword_only_start_idx:]
169
170 @functools.wraps(fn)
171 def wrapper(*args: Any, **kwargs: Any) -> D:
172 args, keyword_only_args = args[:keyword_only_start_idx], args[keyword_only_start_idx:]
173 if keyword_only_args:
174 keyword_only_kwargs = dict(zip(keyword_only_params, keyword_only_args))
175 warnings.warn(
176 f"Using {sequence_to_str(tuple(keyword_only_kwargs.keys()), separate_last='and ')} as positional "
177 f"parameter(s) is deprecated. Please use keyword parameter(s) instead."
178 )
179 kwargs.update(keyword_only_kwargs)
180
181 return fn(*args, **kwargs)
182
183 return wrapper
184
[end of torchvision/prototype/utils/_internal.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/torchvision/prototype/utils/_internal.py b/torchvision/prototype/utils/_internal.py
--- a/torchvision/prototype/utils/_internal.py
+++ b/torchvision/prototype/utils/_internal.py
@@ -30,10 +30,15 @@
def sequence_to_str(seq: Sequence, separate_last: str = "") -> str:
+ if not seq:
+ return ""
if len(seq) == 1:
return f"'{seq[0]}'"
- return f"""'{"', '".join([str(item) for item in seq[:-1]])}', {separate_last}'{seq[-1]}'"""
+ head = "'" + "', '".join([str(item) for item in seq[:-1]]) + "'"
+ tail = f"{'' if separate_last and len(seq) == 2 else ','} {separate_last}'{seq[-1]}'"
+
+ return head + tail
def add_suggestion(
| {"golden_diff": "diff --git a/torchvision/prototype/utils/_internal.py b/torchvision/prototype/utils/_internal.py\n--- a/torchvision/prototype/utils/_internal.py\n+++ b/torchvision/prototype/utils/_internal.py\n@@ -30,10 +30,15 @@\n \n \n def sequence_to_str(seq: Sequence, separate_last: str = \"\") -> str:\n+ if not seq:\n+ return \"\"\n if len(seq) == 1:\n return f\"'{seq[0]}'\"\n \n- return f\"\"\"'{\"', '\".join([str(item) for item in seq[:-1]])}', {separate_last}'{seq[-1]}'\"\"\"\n+ head = \"'\" + \"', '\".join([str(item) for item in seq[:-1]]) + \"'\"\n+ tail = f\"{'' if separate_last and len(seq) == 2 else ','} {separate_last}'{seq[-1]}'\"\n+\n+ return head + tail\n \n \n def add_suggestion(\n", "issue": "Add tests for prototype utilities\nPerhaps we should add tests for `sequence_to_str`, so as to ensure that our error message are properly formatted ?\r\n\r\nAlso nit but if we're going to have such a helper, we could handle the case `a, and b` -> `a and b` (i.e. remove the comma if len == 2\r\n\r\n_Originally posted by @NicolasHug in https://github.com/pytorch/vision/pull/5187#discussion_r784852697_\n\ncc @bjuncek\n", "before_files": [{"content": "import collections.abc\nimport difflib\nimport enum\nimport functools\nimport inspect\nimport os\nimport os.path\nimport textwrap\nimport warnings\nfrom typing import Collection, Sequence, Callable, Any, Iterator, NoReturn, Mapping, TypeVar, Iterable, Tuple, cast\n\n__all__ = [\n \"StrEnum\",\n \"sequence_to_str\",\n \"add_suggestion\",\n \"FrozenMapping\",\n \"make_repr\",\n \"FrozenBunch\",\n \"kwonly_to_pos_or_kw\",\n]\n\n\nclass StrEnumMeta(enum.EnumMeta):\n def __getitem__(self, item):\n return super().__getitem__(item.upper() if isinstance(item, str) else item)\n\n\nclass StrEnum(enum.Enum, metaclass=StrEnumMeta):\n pass\n\n\ndef sequence_to_str(seq: Sequence, separate_last: str = \"\") -> str:\n if len(seq) == 1:\n return f\"'{seq[0]}'\"\n\n return f\"\"\"'{\"', '\".join([str(item) for item in seq[:-1]])}', {separate_last}'{seq[-1]}'\"\"\"\n\n\ndef add_suggestion(\n msg: str,\n *,\n word: str,\n possibilities: Collection[str],\n close_match_hint: Callable[[str], str] = lambda close_match: f\"Did you mean '{close_match}'?\",\n alternative_hint: Callable[\n [Sequence[str]], str\n ] = lambda possibilities: f\"Can be {sequence_to_str(possibilities, separate_last='or ')}.\",\n) -> str:\n if not isinstance(possibilities, collections.abc.Sequence):\n possibilities = sorted(possibilities)\n suggestions = difflib.get_close_matches(word, possibilities, 1)\n hint = close_match_hint(suggestions[0]) if suggestions else alternative_hint(possibilities)\n if not hint:\n return msg\n\n return f\"{msg.strip()} {hint}\"\n\n\nK = TypeVar(\"K\")\nD = TypeVar(\"D\")\n\n\nclass FrozenMapping(Mapping[K, D]):\n def __init__(self, *args: Any, **kwargs: Any) -> None:\n data = dict(*args, **kwargs)\n self.__dict__[\"__data__\"] = data\n self.__dict__[\"__final_hash__\"] = hash(tuple(data.items()))\n\n def __getitem__(self, item: K) -> D:\n return cast(Mapping[K, D], self.__dict__[\"__data__\"])[item]\n\n def __iter__(self) -> Iterator[K]:\n return iter(self.__dict__[\"__data__\"].keys())\n\n def __len__(self) -> int:\n return len(self.__dict__[\"__data__\"])\n\n def __immutable__(self) -> NoReturn:\n raise RuntimeError(f\"'{type(self).__name__}' object is immutable\")\n\n def __setitem__(self, key: K, value: Any) -> NoReturn:\n self.__immutable__()\n\n def __delitem__(self, key: K) -> NoReturn:\n self.__immutable__()\n\n def __hash__(self) -> int:\n return cast(int, self.__dict__[\"__final_hash__\"])\n\n def __eq__(self, other: Any) -> bool:\n if not isinstance(other, FrozenMapping):\n return NotImplemented\n\n return hash(self) == hash(other)\n\n def __repr__(self) -> str:\n return repr(self.__dict__[\"__data__\"])\n\n\ndef make_repr(name: str, items: Iterable[Tuple[str, Any]]) -> str:\n def to_str(sep: str) -> str:\n return sep.join([f\"{key}={value}\" for key, value in items])\n\n prefix = f\"{name}(\"\n postfix = \")\"\n body = to_str(\", \")\n\n line_length = int(os.environ.get(\"COLUMNS\", 80))\n body_too_long = (len(prefix) + len(body) + len(postfix)) > line_length\n multiline_body = len(str(body).splitlines()) > 1\n if not (body_too_long or multiline_body):\n return prefix + body + postfix\n\n body = textwrap.indent(to_str(\",\\n\"), \" \" * 2)\n return f\"{prefix}\\n{body}\\n{postfix}\"\n\n\nclass FrozenBunch(FrozenMapping):\n def __getattr__(self, name: str) -> Any:\n try:\n return self[name]\n except KeyError as error:\n raise AttributeError(f\"'{type(self).__name__}' object has no attribute '{name}'\") from error\n\n def __setattr__(self, key: Any, value: Any) -> NoReturn:\n self.__immutable__()\n\n def __delattr__(self, item: Any) -> NoReturn:\n self.__immutable__()\n\n def __repr__(self) -> str:\n return make_repr(type(self).__name__, self.items())\n\n\ndef kwonly_to_pos_or_kw(fn: Callable[..., D]) -> Callable[..., D]:\n \"\"\"Decorates a function that uses keyword only parameters to also allow them being passed as positionals.\n\n For example, consider the use case of changing the signature of ``old_fn`` into the one from ``new_fn``:\n\n .. code::\n\n def old_fn(foo, bar, baz=None):\n ...\n\n def new_fn(foo, *, bar, baz=None):\n ...\n\n Calling ``old_fn(\"foo\", \"bar, \"baz\")`` was valid, but the same call is no longer valid with ``new_fn``. To keep BC\n and at the same time warn the user of the deprecation, this decorator can be used:\n\n .. code::\n\n @kwonly_to_pos_or_kw\n def new_fn(foo, *, bar, baz=None):\n ...\n\n new_fn(\"foo\", \"bar, \"baz\")\n \"\"\"\n params = inspect.signature(fn).parameters\n\n try:\n keyword_only_start_idx = next(\n idx for idx, param in enumerate(params.values()) if param.kind == param.KEYWORD_ONLY\n )\n except StopIteration:\n raise TypeError(f\"Found no keyword-only parameter on function '{fn.__name__}'\") from None\n\n keyword_only_params = tuple(inspect.signature(fn).parameters)[keyword_only_start_idx:]\n\n @functools.wraps(fn)\n def wrapper(*args: Any, **kwargs: Any) -> D:\n args, keyword_only_args = args[:keyword_only_start_idx], args[keyword_only_start_idx:]\n if keyword_only_args:\n keyword_only_kwargs = dict(zip(keyword_only_params, keyword_only_args))\n warnings.warn(\n f\"Using {sequence_to_str(tuple(keyword_only_kwargs.keys()), separate_last='and ')} as positional \"\n f\"parameter(s) is deprecated. Please use keyword parameter(s) instead.\"\n )\n kwargs.update(keyword_only_kwargs)\n\n return fn(*args, **kwargs)\n\n return wrapper\n", "path": "torchvision/prototype/utils/_internal.py"}]} | 2,575 | 214 |
gh_patches_debug_22616 | rasdani/github-patches | git_diff | diofant__diofant-899 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Ugly unicode pprint output in the pdf docs
Examples from the tutorial introduction:
Note additional padding around symbols and other mess.
See also [this](https://github.com/diofant/diofant/issues/744#issuecomment-450215143).
</issue>
<code>
[start of docs/conf.py]
1 #
2 # Diofant documentation build configuration file.
3 #
4 # This file is execfile()d with the current directory set to its
5 # containing dir.
6 #
7 # The contents of this file are pickled, so don't put values in the
8 # namespace that aren't pickleable (module imports are okay, they're
9 # removed automatically).
10 #
11
12 import inspect
13 import os
14 import sys
15 import warnings
16
17 import diofant
18
19
20 # Turns numpydoc's section warnings to exceptions, see numpy/numpydoc#58.
21 warnings.simplefilter('error', UserWarning)
22
23 # Add any Sphinx extension module names here, as strings.
24 extensions = ['sphinx.ext.autodoc', 'sphinx.ext.linkcode', 'sphinx.ext.mathjax',
25 'sphinx.ext.graphviz', 'sphinx.ext.intersphinx',
26 'sphinx.ext.extlinks', 'sphinx.ext.napoleon',
27 'sphinxcontrib.bibtex']
28
29 napoleon_google_docstring = False
30 napoleon_use_param = False
31 napoleon_use_rtype = False
32
33 # Sphinx will warn about all references where the target cannot be found.
34 nitpicky = True
35
36 # Glob-style patterns that should be excluded when looking for sources.
37 exclude_patterns = ['README.rst']
38
39 # The document name of the "master" document, that is, the document
40 # that contains the root toctree directive.
41 master_doc = 'index'
42
43 # Project information.
44 project = 'Diofant'
45 copyright = '2006-2018 SymPy Development Team, 2013-2019 Sergey B Kirpichev'
46 version = diofant.__version__
47 release = version
48
49 # The name of default reST role, that is, for text marked up `like this`.
50 default_role = 'math'
51
52 # The theme to use for HTML and HTML Help pages.
53 html_theme = 'sphinx_rtd_theme'
54
55 # The LaTeX engine to build the docs.
56 latex_engine = 'xelatex'
57
58 # If True, the PDF build from the LaTeX files created by Sphinx will use xindy
59 # rather than makeindex.
60 latex_use_xindy = False
61
62 # This value determines how to group the document tree into LaTeX source
63 # files. It must be a list of tuples (startdocname, targetname, title,
64 # author, documentclass, toctree_only),
65 latex_documents = [('index', 'diofant.tex', 'Diofant Documentation',
66 'Diofant Development Team', 'manual', True)]
67
68 # A dictionary that contains LaTeX snippets that override predefined.
69 latex_elements = {
70 'preamble': r'''
71 \setmainfont{DejaVu Serif}
72 \setsansfont{DejaVu Sans}
73 \setmonofont{DejaVu Sans Mono}
74 % redefine \LaTeX to be usable in math mode
75 \expandafter\def\expandafter\LaTeX\expandafter{\expandafter\text\expandafter{\LaTeX}}
76 '''
77 }
78
79 # Add page references after internal references.
80 latex_show_pagerefs = True
81
82 # The output format for Graphviz when building HTML files.
83 graphviz_output_format = 'svg'
84
85 # Contains mapping the locations and names of other projects that
86 # should be linked to in this documentation.
87 intersphinx_mapping = {
88 'python3': ('https://docs.python.org/3/', None),
89 'numpy': ('https://docs.scipy.org/doc/numpy', None),
90 'scipy': ('https://docs.scipy.org/doc/scipy/reference', None),
91 }
92
93 # Dictionary of external sites, mapping unique short alias names to a
94 # base URL and a prefix.
95 extlinks = {
96 'issue': ('https://github.com/diofant/diofant/issues/%s', '#'),
97 'pull': ('https://github.com/diofant/diofant/pull/%s', '#'),
98 'commit': ('https://github.com/diofant/diofant/commit/%s', ''),
99 'sympyissue': ('https://github.com/sympy/sympy/issues/%s', 'sympy/sympy#'),
100 'sympypull': ('https://github.com/sympy/sympy/pull/%s', 'sympy/sympy#'),
101 }
102
103 # The number of times the linkcheck builder will attempt to check a URL
104 # before declaring it broken.
105 linkcheck_retries = 3
106
107 # A list of regular expressions that match URIs that should not be checked.
108 linkcheck_ignore = [r'https://primes.utm.edu/notes/gaps.html',
109 r'https://primes.utm.edu/glossary/xpage/BertrandsPostulate.html',
110 r'https://primes.utm.edu/prove/prove2_3.html',
111 r'https://primes.utm.edu/glossary/xpage/Pseudoprime.html']
112
113 # This value controls if docstring for classes or methods, if not explicitly
114 # set, is inherited form parents.
115 autodoc_inherit_docstrings = False
116
117 # A list of paths that contain custom static files. Relative paths are taken as
118 # relative to the configuration directory. They are copied to the output’s
119 # _static directory.
120 html_static_path = ['_static']
121
122 # These paths are either relative to html_static_path
123 # or fully qualified paths (eg. https://...)
124 html_css_files = [
125 'custom.css',
126 ]
127
128 # A list of paths that contain extra files not directly related to the
129 # documentation, such as robots.txt or .htaccess. Relative paths are taken
130 # as relative to the configuration directory. They are copied to the
131 # output directory. They will overwrite any existing file of the same name.
132 html_extra_path = ['robots.txt']
133
134 # Should we show "Created using Sphinx" in the HTML footer?
135 html_show_sphinx = False
136
137 # Paths to the logo and favicon.ico, relative to the conf.py's directory.
138 html_logo = '_static/logo.svg'
139 html_favicon = '_static/favicon.ico'
140 latex_logo = '_static/logo.png'
141
142 # Theme-specific options.
143 html_theme_options = {
144 'logo_only': True,
145 'display_version': False,
146 'analytics_id': 'UA-147167689-1',
147 }
148
149 # The inline configuration options for mathjax. The value is used as
150 # a parameter of MathJax.Hub.Config().
151 mathjax_config = {
152 'CommonHTML': {'linebreaks': {'automatic': True}},
153 'HTML-CSS': {'linebreaks': {'automatic': True}},
154 'SVG': {'linebreaks': {'automatic': True}},
155 }
156
157
158 def linkcode_resolve(domain, info):
159 """Determine the URL corresponding to Python object. """
160 if domain != 'py':
161 return
162
163 modname = info['module']
164 fullname = info['fullname']
165
166 submod = sys.modules.get(modname)
167 if submod is None:
168 return
169
170 obj = submod
171 for part in fullname.split('.'):
172 try:
173 obj = getattr(obj, part)
174 except Exception:
175 return
176
177 # strip decorators, which would resolve to the source of the decorator
178 # possibly an upstream bug in getsourcefile, bpo-1764286
179 try:
180 unwrap = inspect.unwrap
181 except AttributeError:
182 pass
183 else:
184 obj = unwrap(obj)
185
186 try:
187 fn = inspect.getsourcefile(obj)
188 except Exception:
189 fn = None
190 if not fn:
191 return
192
193 try:
194 source, lineno = inspect.getsourcelines(obj)
195 except Exception:
196 lineno = None
197
198 if lineno:
199 linespec = "#L%d-L%d" % (lineno, lineno + len(source) - 1)
200 else:
201 linespec = ""
202
203 fn = os.path.relpath(fn, start=os.path.dirname(diofant.__file__))
204
205 blobpath = "https://github.com/diofant/diofant/blob/"
206 if 'dev' in version:
207 return blobpath + "master/diofant/%s%s" % (fn, linespec)
208 else:
209 return blobpath + "v%s/diofant/%s%s" % (version, fn, linespec)
210
[end of docs/conf.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/docs/conf.py b/docs/conf.py
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -14,6 +14,8 @@
import sys
import warnings
+import sphinx.util.texescape
+
import diofant
@@ -67,12 +69,16 @@
# A dictionary that contains LaTeX snippets that override predefined.
latex_elements = {
- 'preamble': r'''
+ 'fontpkg': r'''
\setmainfont{DejaVu Serif}
\setsansfont{DejaVu Sans}
\setmonofont{DejaVu Sans Mono}
+''',
+ 'preamble': r'''
% redefine \LaTeX to be usable in math mode
\expandafter\def\expandafter\LaTeX\expandafter{\expandafter\text\expandafter{\LaTeX}}
+
+\fvset{formatcom=\baselineskip10pt\relax\let\strut\empty}
'''
}
@@ -207,3 +213,7 @@
return blobpath + "master/diofant/%s%s" % (fn, linespec)
else:
return blobpath + "v%s/diofant/%s%s" % (version, fn, linespec)
+
+
+# monkey-patch sphinx
+del sphinx.util.texescape.tex_replacements[29:]
| {"golden_diff": "diff --git a/docs/conf.py b/docs/conf.py\n--- a/docs/conf.py\n+++ b/docs/conf.py\n@@ -14,6 +14,8 @@\n import sys\n import warnings\n \n+import sphinx.util.texescape\n+\n import diofant\n \n \n@@ -67,12 +69,16 @@\n \n # A dictionary that contains LaTeX snippets that override predefined.\n latex_elements = {\n- 'preamble': r'''\n+ 'fontpkg': r'''\n \\setmainfont{DejaVu Serif}\n \\setsansfont{DejaVu Sans}\n \\setmonofont{DejaVu Sans Mono}\n+''',\n+ 'preamble': r'''\n % redefine \\LaTeX to be usable in math mode\n \\expandafter\\def\\expandafter\\LaTeX\\expandafter{\\expandafter\\text\\expandafter{\\LaTeX}}\n+\n+\\fvset{formatcom=\\baselineskip10pt\\relax\\let\\strut\\empty}\n '''\n }\n \n@@ -207,3 +213,7 @@\n return blobpath + \"master/diofant/%s%s\" % (fn, linespec)\n else:\n return blobpath + \"v%s/diofant/%s%s\" % (version, fn, linespec)\n+\n+\n+# monkey-patch sphinx\n+del sphinx.util.texescape.tex_replacements[29:]\n", "issue": "Ugly unicode pprint output in the pdf docs\nExamples from the tutorial introduction:\r\n\r\n\r\n\r\n\r\nNote additional padding around symbols and other mess.\r\n\r\nSee also [this](https://github.com/diofant/diofant/issues/744#issuecomment-450215143).\n", "before_files": [{"content": "#\n# Diofant documentation build configuration file.\n#\n# This file is execfile()d with the current directory set to its\n# containing dir.\n#\n# The contents of this file are pickled, so don't put values in the\n# namespace that aren't pickleable (module imports are okay, they're\n# removed automatically).\n#\n\nimport inspect\nimport os\nimport sys\nimport warnings\n\nimport diofant\n\n\n# Turns numpydoc's section warnings to exceptions, see numpy/numpydoc#58.\nwarnings.simplefilter('error', UserWarning)\n\n# Add any Sphinx extension module names here, as strings.\nextensions = ['sphinx.ext.autodoc', 'sphinx.ext.linkcode', 'sphinx.ext.mathjax',\n 'sphinx.ext.graphviz', 'sphinx.ext.intersphinx',\n 'sphinx.ext.extlinks', 'sphinx.ext.napoleon',\n 'sphinxcontrib.bibtex']\n\nnapoleon_google_docstring = False\nnapoleon_use_param = False\nnapoleon_use_rtype = False\n\n# Sphinx will warn about all references where the target cannot be found.\nnitpicky = True\n\n# Glob-style patterns that should be excluded when looking for sources.\nexclude_patterns = ['README.rst']\n\n# The document name of the \"master\" document, that is, the document\n# that contains the root toctree directive.\nmaster_doc = 'index'\n\n# Project information.\nproject = 'Diofant'\ncopyright = '2006-2018 SymPy Development Team, 2013-2019 Sergey B Kirpichev'\nversion = diofant.__version__\nrelease = version\n\n# The name of default reST role, that is, for text marked up `like this`.\ndefault_role = 'math'\n\n# The theme to use for HTML and HTML Help pages.\nhtml_theme = 'sphinx_rtd_theme'\n\n# The LaTeX engine to build the docs.\nlatex_engine = 'xelatex'\n\n# If True, the PDF build from the LaTeX files created by Sphinx will use xindy\n# rather than makeindex.\nlatex_use_xindy = False\n\n# This value determines how to group the document tree into LaTeX source\n# files. It must be a list of tuples (startdocname, targetname, title,\n# author, documentclass, toctree_only),\nlatex_documents = [('index', 'diofant.tex', 'Diofant Documentation',\n 'Diofant Development Team', 'manual', True)]\n\n# A dictionary that contains LaTeX snippets that override predefined.\nlatex_elements = {\n 'preamble': r'''\n\\setmainfont{DejaVu Serif}\n\\setsansfont{DejaVu Sans}\n\\setmonofont{DejaVu Sans Mono}\n% redefine \\LaTeX to be usable in math mode\n\\expandafter\\def\\expandafter\\LaTeX\\expandafter{\\expandafter\\text\\expandafter{\\LaTeX}}\n'''\n}\n\n# Add page references after internal references.\nlatex_show_pagerefs = True\n\n# The output format for Graphviz when building HTML files.\ngraphviz_output_format = 'svg'\n\n# Contains mapping the locations and names of other projects that\n# should be linked to in this documentation.\nintersphinx_mapping = {\n 'python3': ('https://docs.python.org/3/', None),\n 'numpy': ('https://docs.scipy.org/doc/numpy', None),\n 'scipy': ('https://docs.scipy.org/doc/scipy/reference', None),\n}\n\n# Dictionary of external sites, mapping unique short alias names to a\n# base URL and a prefix.\nextlinks = {\n 'issue': ('https://github.com/diofant/diofant/issues/%s', '#'),\n 'pull': ('https://github.com/diofant/diofant/pull/%s', '#'),\n 'commit': ('https://github.com/diofant/diofant/commit/%s', ''),\n 'sympyissue': ('https://github.com/sympy/sympy/issues/%s', 'sympy/sympy#'),\n 'sympypull': ('https://github.com/sympy/sympy/pull/%s', 'sympy/sympy#'),\n}\n\n# The number of times the linkcheck builder will attempt to check a URL\n# before declaring it broken.\nlinkcheck_retries = 3\n\n# A list of regular expressions that match URIs that should not be checked.\nlinkcheck_ignore = [r'https://primes.utm.edu/notes/gaps.html',\n r'https://primes.utm.edu/glossary/xpage/BertrandsPostulate.html',\n r'https://primes.utm.edu/prove/prove2_3.html',\n r'https://primes.utm.edu/glossary/xpage/Pseudoprime.html']\n\n# This value controls if docstring for classes or methods, if not explicitly\n# set, is inherited form parents.\nautodoc_inherit_docstrings = False\n\n# A list of paths that contain custom static files. Relative paths are taken as\n# relative to the configuration directory. They are copied to the output\u2019s\n# _static directory.\nhtml_static_path = ['_static']\n\n# These paths are either relative to html_static_path\n# or fully qualified paths (eg. https://...)\nhtml_css_files = [\n 'custom.css',\n]\n\n# A list of paths that contain extra files not directly related to the\n# documentation, such as robots.txt or .htaccess. Relative paths are taken\n# as relative to the configuration directory. They are copied to the\n# output directory. They will overwrite any existing file of the same name.\nhtml_extra_path = ['robots.txt']\n\n# Should we show \"Created using Sphinx\" in the HTML footer?\nhtml_show_sphinx = False\n\n# Paths to the logo and favicon.ico, relative to the conf.py's directory.\nhtml_logo = '_static/logo.svg'\nhtml_favicon = '_static/favicon.ico'\nlatex_logo = '_static/logo.png'\n\n# Theme-specific options.\nhtml_theme_options = {\n 'logo_only': True,\n 'display_version': False,\n 'analytics_id': 'UA-147167689-1',\n}\n\n# The inline configuration options for mathjax. The value is used as\n# a parameter of MathJax.Hub.Config().\nmathjax_config = {\n 'CommonHTML': {'linebreaks': {'automatic': True}},\n 'HTML-CSS': {'linebreaks': {'automatic': True}},\n 'SVG': {'linebreaks': {'automatic': True}},\n}\n\n\ndef linkcode_resolve(domain, info):\n \"\"\"Determine the URL corresponding to Python object. \"\"\"\n if domain != 'py':\n return\n\n modname = info['module']\n fullname = info['fullname']\n\n submod = sys.modules.get(modname)\n if submod is None:\n return\n\n obj = submod\n for part in fullname.split('.'):\n try:\n obj = getattr(obj, part)\n except Exception:\n return\n\n # strip decorators, which would resolve to the source of the decorator\n # possibly an upstream bug in getsourcefile, bpo-1764286\n try:\n unwrap = inspect.unwrap\n except AttributeError:\n pass\n else:\n obj = unwrap(obj)\n\n try:\n fn = inspect.getsourcefile(obj)\n except Exception:\n fn = None\n if not fn:\n return\n\n try:\n source, lineno = inspect.getsourcelines(obj)\n except Exception:\n lineno = None\n\n if lineno:\n linespec = \"#L%d-L%d\" % (lineno, lineno + len(source) - 1)\n else:\n linespec = \"\"\n\n fn = os.path.relpath(fn, start=os.path.dirname(diofant.__file__))\n\n blobpath = \"https://github.com/diofant/diofant/blob/\"\n if 'dev' in version:\n return blobpath + \"master/diofant/%s%s\" % (fn, linespec)\n else:\n return blobpath + \"v%s/diofant/%s%s\" % (version, fn, linespec)\n", "path": "docs/conf.py"}]} | 2,945 | 303 |
gh_patches_debug_12649 | rasdani/github-patches | git_diff | interlegis__sapl-408 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Listagem de Parlamentares mostra último partido desfiliado ao invés de 'Sem Partido'
Se o parlamentar estiver desfiliado do último partido a listagem de parlamentares deve mostrar como "Sem Partido". Atualmente, a listagem de parlamentar mostra este partido como sendo o atual do parlamentar.
</issue>
<code>
[start of parlamentares/views.py]
1 from django.contrib import messages
2 from django.core.urlresolvers import reverse_lazy
3 from django.shortcuts import redirect
4 from django.utils.datastructures import MultiValueDictKeyError
5 from django.utils.translation import ugettext_lazy as _
6 from django.views.generic import FormView
7
8 import crud.base
9 import crud.masterdetail
10 from crud.base import Crud
11 from crud.masterdetail import MasterDetailCrud
12
13 from .forms import FiliacaoForm, ParlamentarCreateForm, ParlamentarForm
14 from .models import (CargoMesa, Coligacao, ComposicaoMesa, Dependente,
15 Filiacao, Legislatura, Mandato, NivelInstrucao,
16 Parlamentar, Partido, SessaoLegislativa, SituacaoMilitar,
17 TipoAfastamento, TipoDependente)
18
19 CargoMesaCrud = Crud.build(CargoMesa, 'cargo_mesa')
20 LegislaturaCrud = Crud.build(Legislatura, 'tabelas_auxiliares#legislatura')
21 ColigacaoCrud = Crud.build(Coligacao, 'coligacao')
22 PartidoCrud = Crud.build(Partido, 'partidos')
23 SessaoLegislativaCrud = Crud.build(SessaoLegislativa, 'sessao_legislativa')
24 TipoDependenteCrud = Crud.build(TipoDependente, 'tipo_dependente')
25 NivelInstrucaoCrud = Crud.build(NivelInstrucao, 'nivel_instrucao')
26 TipoAfastamentoCrud = Crud.build(TipoAfastamento, 'tipo_afastamento')
27 TipoMilitarCrud = Crud.build(SituacaoMilitar, 'tipo_situa_militar')
28
29 DependenteCrud = MasterDetailCrud.build(Dependente, 'parlamentar', '')
30 MandatoCrud = MasterDetailCrud.build(Mandato, 'parlamentar', '')
31
32
33 class FiliacaoCrud(MasterDetailCrud):
34 model = Filiacao
35 parent_field = 'parlamentar'
36 help_path = ''
37
38 class CreateView(MasterDetailCrud.CreateView):
39 form_class = FiliacaoForm
40
41 class UpdateView(MasterDetailCrud.UpdateView):
42 form_class = FiliacaoForm
43
44
45 class ParlamentarCrud(Crud):
46 model = Parlamentar
47 help_path = ''
48
49 class UpdateView(crud.base.CrudUpdateView):
50 form_class = ParlamentarForm
51
52 class CreateView(crud.base.CrudCreateView):
53 form_class = ParlamentarCreateForm
54
55 @property
56 def layout_key(self):
57 return 'ParlamentarCreate'
58
59 class ListView(crud.base.CrudListView):
60 template_name = "parlamentares/parlamentares_list.html"
61 paginate_by = None
62
63 def take_legislatura_id(self):
64 legislaturas = Legislatura.objects.all().order_by(
65 '-data_inicio', '-data_fim')
66
67 try:
68 legislatura_id = int(self.request.GET['periodo'])
69 except MultiValueDictKeyError:
70 legislatura_id = legislaturas.first().id
71
72 return legislatura_id
73
74 def get_queryset(self):
75 mandatos = Mandato.objects.filter(
76 legislatura_id=self.take_legislatura_id())
77 return mandatos
78
79 def get_rows(self, object_list):
80 parlamentares = []
81 for m in object_list:
82 ultima_filiacao = m.parlamentar.filiacao_set.first()
83 if ultima_filiacao:
84 partido = ultima_filiacao.partido.sigla
85 else:
86 partido = _('Sem Registro')
87
88 parlamentar = [
89 (m.parlamentar.nome_parlamentar, m.parlamentar.id),
90 (partido, None),
91 ('Sim' if m.parlamentar.ativo else 'Não', None)
92 ]
93 parlamentares.append(parlamentar)
94 return parlamentares
95
96 def get_headers(self):
97 return ['Parlamentar', 'Partido', 'Ativo?']
98
99 def get_context_data(self, **kwargs):
100 context = super(ParlamentarCrud.ListView, self
101 ).get_context_data(**kwargs)
102 context.setdefault('title', self.verbose_name_plural)
103
104 # Adiciona legislatura para filtrar parlamentares
105 legislaturas = Legislatura.objects.all().order_by(
106 '-data_inicio', '-data_fim')
107 context['legislaturas'] = legislaturas
108 context['legislatura_id'] = self.take_legislatura_id()
109 return context
110
111
112 class MesaDiretoraView(FormView):
113 template_name = "mesa_diretora/mesa_diretora.html"
114 success_url = reverse_lazy('parlamentares:mesa_diretora')
115
116 # Essa função avisa quando se pode compor uma Mesa Legislativa)
117 def validation(self, request):
118 mensagem = _("Não há nenhuma Sessão Legislativa cadastrada. \
119 Só é possível compor uma Mesa Diretora quando há uma Sessão \
120 Legislativa cadastrada.")
121 messages.add_message(request, messages.INFO, mensagem)
122
123 return self.render_to_response(
124 {'legislaturas': Legislatura.objects.all(
125 ).order_by('-data_inicio'),
126 'legislatura_selecionada': Legislatura.objects.last(),
127 'cargos_vagos': CargoMesa.objects.all()})
128
129 def get(self, request, *args, **kwargs):
130
131 if (not Legislatura.objects.all() or
132 not SessaoLegislativa.objects.all()):
133 return self.validation(request)
134
135 mesa = SessaoLegislativa.objects.filter(
136 legislatura=Legislatura.objects.last()).first(
137 ).composicaomesa_set.all()
138
139 cargos_ocupados = [m.cargo for m in mesa]
140 cargos = CargoMesa.objects.all()
141 cargos_vagos = list(set(cargos) - set(cargos_ocupados))
142
143 parlamentares = Legislatura.objects.last().mandato_set.all()
144 parlamentares_ocupados = [m.parlamentar for m in mesa]
145 parlamentares_vagos = list(
146 set(
147 [p.parlamentar for p in parlamentares]) - set(
148 parlamentares_ocupados))
149
150 return self.render_to_response(
151 {'legislaturas': Legislatura.objects.all(
152 ).order_by('-data_inicio'),
153 'legislatura_selecionada': Legislatura.objects.last(),
154 'sessoes': SessaoLegislativa.objects.filter(
155 legislatura=Legislatura.objects.last()),
156 'sessao_selecionada': SessaoLegislativa.objects.filter(
157 legislatura=Legislatura.objects.last()).first(),
158 'composicao_mesa': mesa,
159 'parlamentares': parlamentares_vagos,
160 'cargos_vagos': cargos_vagos
161 })
162
163 def post(self, request, *args, **kwargs):
164 if 'Incluir' in request.POST:
165
166 if (not Legislatura.objects.all() or
167 not SessaoLegislativa.objects.all()):
168 return self.validation(request)
169
170 composicao = ComposicaoMesa()
171 composicao.sessao_legislativa = SessaoLegislativa.objects.get(
172 id=int(request.POST['sessao']))
173 composicao.parlamentar = Parlamentar.objects.get(
174 id=int(request.POST['parlamentar']))
175 composicao.cargo = CargoMesa.objects.get(
176 id=int(request.POST['cargo']))
177 composicao.save()
178
179 return redirect('parlamentares:mesa_diretora')
180
181 elif 'Excluir' in request.POST:
182
183 if (not Legislatura.objects.all() or
184 not SessaoLegislativa.objects.all()):
185 return self.validation(request)
186
187 if 'composicao_mesa' in request.POST:
188 ids = request.POST['composicao_mesa'].split(':')
189 composicao = ComposicaoMesa.objects.get(
190 sessao_legislativa_id=int(request.POST['sessao']),
191 parlamentar_id=int(ids[0]),
192 cargo_id=int(ids[1])
193 )
194 composicao.delete()
195 return redirect('parlamentares:mesa_diretora')
196 else:
197 mesa = ComposicaoMesa.objects.filter(
198 sessao_legislativa=request.POST['sessao'])
199
200 cargos_ocupados = [m.cargo for m in mesa]
201 cargos = CargoMesa.objects.all()
202 cargos_vagos = list(set(cargos) - set(cargos_ocupados))
203
204 parlamentares = Legislatura.objects.get(
205 id=int(request.POST['legislatura'])).mandato_set.all()
206 parlamentares_ocupados = [m.parlamentar for m in mesa]
207 parlamentares_vagos = list(
208 set(
209 [p.parlamentar for p in parlamentares]) - set(
210 parlamentares_ocupados))
211 return self.render_to_response(
212 {'legislaturas': Legislatura.objects.all(
213 ).order_by('-data_inicio'),
214 'legislatura_selecionada': Legislatura.objects.get(
215 id=int(request.POST['legislatura'])),
216 'sessoes': SessaoLegislativa.objects.filter(
217 legislatura_id=int(request.POST['legislatura'])),
218 'sessao_selecionada': SessaoLegislativa.objects.get(
219 id=int(request.POST['sessao'])),
220 'composicao_mesa': mesa,
221 'parlamentares': parlamentares_vagos,
222 'cargos_vagos': cargos_vagos
223 })
224
[end of parlamentares/views.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/parlamentares/views.py b/parlamentares/views.py
--- a/parlamentares/views.py
+++ b/parlamentares/views.py
@@ -80,10 +80,10 @@
parlamentares = []
for m in object_list:
ultima_filiacao = m.parlamentar.filiacao_set.first()
- if ultima_filiacao:
+ if ultima_filiacao and not ultima_filiacao.data_desfiliacao:
partido = ultima_filiacao.partido.sigla
else:
- partido = _('Sem Registro')
+ partido = _('Sem Partido')
parlamentar = [
(m.parlamentar.nome_parlamentar, m.parlamentar.id),
| {"golden_diff": "diff --git a/parlamentares/views.py b/parlamentares/views.py\n--- a/parlamentares/views.py\n+++ b/parlamentares/views.py\n@@ -80,10 +80,10 @@\n parlamentares = []\n for m in object_list:\n ultima_filiacao = m.parlamentar.filiacao_set.first()\n- if ultima_filiacao:\n+ if ultima_filiacao and not ultima_filiacao.data_desfiliacao:\n partido = ultima_filiacao.partido.sigla\n else:\n- partido = _('Sem Registro')\n+ partido = _('Sem Partido')\n \n parlamentar = [\n (m.parlamentar.nome_parlamentar, m.parlamentar.id),\n", "issue": "Listagem de Parlamentares mostra \u00faltimo partido desfiliado ao inv\u00e9s de 'Sem Partido'\nSe o parlamentar estiver desfiliado do \u00faltimo partido a listagem de parlamentares deve mostrar como \"Sem Partido\". Atualmente, a listagem de parlamentar mostra este partido como sendo o atual do parlamentar.\n\n", "before_files": [{"content": "from django.contrib import messages\nfrom django.core.urlresolvers import reverse_lazy\nfrom django.shortcuts import redirect\nfrom django.utils.datastructures import MultiValueDictKeyError\nfrom django.utils.translation import ugettext_lazy as _\nfrom django.views.generic import FormView\n\nimport crud.base\nimport crud.masterdetail\nfrom crud.base import Crud\nfrom crud.masterdetail import MasterDetailCrud\n\nfrom .forms import FiliacaoForm, ParlamentarCreateForm, ParlamentarForm\nfrom .models import (CargoMesa, Coligacao, ComposicaoMesa, Dependente,\n Filiacao, Legislatura, Mandato, NivelInstrucao,\n Parlamentar, Partido, SessaoLegislativa, SituacaoMilitar,\n TipoAfastamento, TipoDependente)\n\nCargoMesaCrud = Crud.build(CargoMesa, 'cargo_mesa')\nLegislaturaCrud = Crud.build(Legislatura, 'tabelas_auxiliares#legislatura')\nColigacaoCrud = Crud.build(Coligacao, 'coligacao')\nPartidoCrud = Crud.build(Partido, 'partidos')\nSessaoLegislativaCrud = Crud.build(SessaoLegislativa, 'sessao_legislativa')\nTipoDependenteCrud = Crud.build(TipoDependente, 'tipo_dependente')\nNivelInstrucaoCrud = Crud.build(NivelInstrucao, 'nivel_instrucao')\nTipoAfastamentoCrud = Crud.build(TipoAfastamento, 'tipo_afastamento')\nTipoMilitarCrud = Crud.build(SituacaoMilitar, 'tipo_situa_militar')\n\nDependenteCrud = MasterDetailCrud.build(Dependente, 'parlamentar', '')\nMandatoCrud = MasterDetailCrud.build(Mandato, 'parlamentar', '')\n\n\nclass FiliacaoCrud(MasterDetailCrud):\n model = Filiacao\n parent_field = 'parlamentar'\n help_path = ''\n\n class CreateView(MasterDetailCrud.CreateView):\n form_class = FiliacaoForm\n\n class UpdateView(MasterDetailCrud.UpdateView):\n form_class = FiliacaoForm\n\n\nclass ParlamentarCrud(Crud):\n model = Parlamentar\n help_path = ''\n\n class UpdateView(crud.base.CrudUpdateView):\n form_class = ParlamentarForm\n\n class CreateView(crud.base.CrudCreateView):\n form_class = ParlamentarCreateForm\n\n @property\n def layout_key(self):\n return 'ParlamentarCreate'\n\n class ListView(crud.base.CrudListView):\n template_name = \"parlamentares/parlamentares_list.html\"\n paginate_by = None\n\n def take_legislatura_id(self):\n legislaturas = Legislatura.objects.all().order_by(\n '-data_inicio', '-data_fim')\n\n try:\n legislatura_id = int(self.request.GET['periodo'])\n except MultiValueDictKeyError:\n legislatura_id = legislaturas.first().id\n\n return legislatura_id\n\n def get_queryset(self):\n mandatos = Mandato.objects.filter(\n legislatura_id=self.take_legislatura_id())\n return mandatos\n\n def get_rows(self, object_list):\n parlamentares = []\n for m in object_list:\n ultima_filiacao = m.parlamentar.filiacao_set.first()\n if ultima_filiacao:\n partido = ultima_filiacao.partido.sigla\n else:\n partido = _('Sem Registro')\n\n parlamentar = [\n (m.parlamentar.nome_parlamentar, m.parlamentar.id),\n (partido, None),\n ('Sim' if m.parlamentar.ativo else 'N\u00e3o', None)\n ]\n parlamentares.append(parlamentar)\n return parlamentares\n\n def get_headers(self):\n return ['Parlamentar', 'Partido', 'Ativo?']\n\n def get_context_data(self, **kwargs):\n context = super(ParlamentarCrud.ListView, self\n ).get_context_data(**kwargs)\n context.setdefault('title', self.verbose_name_plural)\n\n # Adiciona legislatura para filtrar parlamentares\n legislaturas = Legislatura.objects.all().order_by(\n '-data_inicio', '-data_fim')\n context['legislaturas'] = legislaturas\n context['legislatura_id'] = self.take_legislatura_id()\n return context\n\n\nclass MesaDiretoraView(FormView):\n template_name = \"mesa_diretora/mesa_diretora.html\"\n success_url = reverse_lazy('parlamentares:mesa_diretora')\n\n # Essa fun\u00e7\u00e3o avisa quando se pode compor uma Mesa Legislativa)\n def validation(self, request):\n mensagem = _(\"N\u00e3o h\u00e1 nenhuma Sess\u00e3o Legislativa cadastrada. \\\n S\u00f3 \u00e9 poss\u00edvel compor uma Mesa Diretora quando h\u00e1 uma Sess\u00e3o \\\n Legislativa cadastrada.\")\n messages.add_message(request, messages.INFO, mensagem)\n\n return self.render_to_response(\n {'legislaturas': Legislatura.objects.all(\n ).order_by('-data_inicio'),\n 'legislatura_selecionada': Legislatura.objects.last(),\n 'cargos_vagos': CargoMesa.objects.all()})\n\n def get(self, request, *args, **kwargs):\n\n if (not Legislatura.objects.all() or\n not SessaoLegislativa.objects.all()):\n return self.validation(request)\n\n mesa = SessaoLegislativa.objects.filter(\n legislatura=Legislatura.objects.last()).first(\n ).composicaomesa_set.all()\n\n cargos_ocupados = [m.cargo for m in mesa]\n cargos = CargoMesa.objects.all()\n cargos_vagos = list(set(cargos) - set(cargos_ocupados))\n\n parlamentares = Legislatura.objects.last().mandato_set.all()\n parlamentares_ocupados = [m.parlamentar for m in mesa]\n parlamentares_vagos = list(\n set(\n [p.parlamentar for p in parlamentares]) - set(\n parlamentares_ocupados))\n\n return self.render_to_response(\n {'legislaturas': Legislatura.objects.all(\n ).order_by('-data_inicio'),\n 'legislatura_selecionada': Legislatura.objects.last(),\n 'sessoes': SessaoLegislativa.objects.filter(\n legislatura=Legislatura.objects.last()),\n 'sessao_selecionada': SessaoLegislativa.objects.filter(\n legislatura=Legislatura.objects.last()).first(),\n 'composicao_mesa': mesa,\n 'parlamentares': parlamentares_vagos,\n 'cargos_vagos': cargos_vagos\n })\n\n def post(self, request, *args, **kwargs):\n if 'Incluir' in request.POST:\n\n if (not Legislatura.objects.all() or\n not SessaoLegislativa.objects.all()):\n return self.validation(request)\n\n composicao = ComposicaoMesa()\n composicao.sessao_legislativa = SessaoLegislativa.objects.get(\n id=int(request.POST['sessao']))\n composicao.parlamentar = Parlamentar.objects.get(\n id=int(request.POST['parlamentar']))\n composicao.cargo = CargoMesa.objects.get(\n id=int(request.POST['cargo']))\n composicao.save()\n\n return redirect('parlamentares:mesa_diretora')\n\n elif 'Excluir' in request.POST:\n\n if (not Legislatura.objects.all() or\n not SessaoLegislativa.objects.all()):\n return self.validation(request)\n\n if 'composicao_mesa' in request.POST:\n ids = request.POST['composicao_mesa'].split(':')\n composicao = ComposicaoMesa.objects.get(\n sessao_legislativa_id=int(request.POST['sessao']),\n parlamentar_id=int(ids[0]),\n cargo_id=int(ids[1])\n )\n composicao.delete()\n return redirect('parlamentares:mesa_diretora')\n else:\n mesa = ComposicaoMesa.objects.filter(\n sessao_legislativa=request.POST['sessao'])\n\n cargos_ocupados = [m.cargo for m in mesa]\n cargos = CargoMesa.objects.all()\n cargos_vagos = list(set(cargos) - set(cargos_ocupados))\n\n parlamentares = Legislatura.objects.get(\n id=int(request.POST['legislatura'])).mandato_set.all()\n parlamentares_ocupados = [m.parlamentar for m in mesa]\n parlamentares_vagos = list(\n set(\n [p.parlamentar for p in parlamentares]) - set(\n parlamentares_ocupados))\n return self.render_to_response(\n {'legislaturas': Legislatura.objects.all(\n ).order_by('-data_inicio'),\n 'legislatura_selecionada': Legislatura.objects.get(\n id=int(request.POST['legislatura'])),\n 'sessoes': SessaoLegislativa.objects.filter(\n legislatura_id=int(request.POST['legislatura'])),\n 'sessao_selecionada': SessaoLegislativa.objects.get(\n id=int(request.POST['sessao'])),\n 'composicao_mesa': mesa,\n 'parlamentares': parlamentares_vagos,\n 'cargos_vagos': cargos_vagos\n })\n", "path": "parlamentares/views.py"}]} | 3,278 | 175 |
gh_patches_debug_18298 | rasdani/github-patches | git_diff | mkdocs__mkdocs-3367 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Allow plugins to override `Page` when populating navigation
Following up on https://github.com/squidfunk/mkdocs-material/issues/5909#issuecomment-1696958973, I'm suggesting to adjust the logic that MkDocs implies to create `Page` objects from/in files, i.e., `File` objects. Currently, [`_data_to_navigation`](https://github.com/mkdocs/mkdocs/blob/master/mkdocs/structure/nav.py#L179) will always create (and thus overwrite) `Page` on everything that doesn't look like a `Link` or `Section`. Excerpt of the comment linked:
> MkDocs will always generate either a [`Link` or a `Page` for a file that is not excluded](https://github.com/mkdocs/mkdocs/blob/94e9f17cd7a69e70c18ae282d55ba2f34f93c542/mkdocs/structure/nav.py#L203-L204). As you've probably noticed, the blog plugin makes use of subclasses for pages of specific types, e.g. [`Post`](https://github.com/squidfunk/mkdocs-material/blob/de0c5b7719deff6d092dc673e82af701c6f36001/src/plugins/blog/structure/__init__.py#L48), [`View`](https://github.com/squidfunk/mkdocs-material/blob/de0c5b7719deff6d092dc673e82af701c6f36001/src/plugins/blog/structure/__init__.py#L204), etc., and relations among different concepts in the plugin are managed inside the instances of those subclasses. The problem is, that __MkDocs will always generate a plain old `Page` instance, overwriting the more specific instance that has been generated by the plugin before__ [after `on_files` and before `on_nav`](https://github.com/mkdocs/mkdocs/blob/94e9f17cd7a69e70c18ae282d55ba2f34f93c542/mkdocs/commands/build.py#L303-L311). We could still solve it by splitting file generation and page instantiation, but this would make things much more complicated and non-linear, because during generation, [we already assign categories to pages and vice versa](https://github.com/squidfunk/mkdocs-material/blob/de0c5b7719deff6d092dc673e82af701c6f36001/src/plugins/blog/plugin.py#L598-L599), etc. We would need to split this into two stages, blowing up the code base of the plugin and also the runtime, as we're doing two passes. This is clearly not favorable from our perspective.
>
> __Moving forward__: I believe that this problem can be mitigated with a very small but important change in MkDocs: if a `File` already defines a dedicated `Page` in `file.page`, MkDocs should just use that instead of creating a new one:
>
> ``` py
> return file.page if isinstance(file.page, Page) else Page(title, file, config)
> ```
>
> It's essentially a single line change in MkDocs that would make things much, much simpler for plugin developers. I've written several plugins now, and I repeatedly had to work around the oddities of this behavior.
Thus, I'm proposing to change [the following line](https://github.com/mkdocs/mkdocs/blob/94e9f17cd7a69e70c18ae282d55ba2f34f93c542/mkdocs/structure/nav.py#L203):
``` py
# Now: always create a page
return Page(title, file, config)
# Better: only create a page when one was not created before
return file.page if isinstance(file.page, Page) else Page(title, file, config)
```
Currently, the only way to work around this limitation is to overwrite `Page.__class__` on the resulting instance in `on_nav`, e.g., like done in [section-index](https://github.com/oprypin/mkdocs-section-index/blob/f5414c0775848cec96f1181f74c622fe3e14985e/mkdocs_section_index/plugin.py#L33-L34), which, AFAIK, does not call `__init__` or initializes instance variables:
``` py
page.__class__ = CustomPage
assert isinstance(page, CustomPage)
```
</issue>
<code>
[start of mkdocs/structure/nav.py]
1 from __future__ import annotations
2
3 import logging
4 from typing import TYPE_CHECKING, Iterator, TypeVar
5 from urllib.parse import urlsplit
6
7 from mkdocs.structure import StructureItem
8 from mkdocs.structure.pages import Page
9 from mkdocs.utils import nest_paths
10
11 if TYPE_CHECKING:
12 from mkdocs.config.defaults import MkDocsConfig
13 from mkdocs.structure.files import Files
14
15
16 log = logging.getLogger(__name__)
17
18
19 class Navigation:
20 def __init__(self, items: list, pages: list[Page]) -> None:
21 self.items = items # Nested List with full navigation of Sections, Pages, and Links.
22 self.pages = pages # Flat List of subset of Pages in nav, in order.
23
24 self.homepage = None
25 for page in pages:
26 if page.is_homepage:
27 self.homepage = page
28 break
29
30 homepage: Page | None
31 """The [page][mkdocs.structure.pages.Page] object for the homepage of the site."""
32
33 pages: list[Page]
34 """A flat list of all [page][mkdocs.structure.pages.Page] objects contained in the navigation."""
35
36 def __str__(self) -> str:
37 return '\n'.join(item._indent_print() for item in self)
38
39 def __iter__(self) -> Iterator:
40 return iter(self.items)
41
42 def __len__(self) -> int:
43 return len(self.items)
44
45
46 class Section(StructureItem):
47 def __init__(self, title: str, children: list[StructureItem]) -> None:
48 self.title = title
49 self.children = children
50
51 self.active = False
52
53 def __repr__(self):
54 name = self.__class__.__name__
55 return f"{name}(title={self.title!r})"
56
57 title: str
58 """The title of the section."""
59
60 children: list[StructureItem]
61 """An iterable of all child navigation objects. Children may include nested sections, pages and links."""
62
63 @property
64 def active(self) -> bool:
65 """
66 When `True`, indicates that a child page of this section is the current page and
67 can be used to highlight the section as the currently viewed section. Defaults
68 to `False`.
69 """
70 return self.__active
71
72 @active.setter
73 def active(self, value: bool):
74 """Set active status of section and ancestors."""
75 self.__active = bool(value)
76 if self.parent is not None:
77 self.parent.active = bool(value)
78
79 is_section: bool = True
80 """Indicates that the navigation object is a "section" object. Always `True` for section objects."""
81
82 is_page: bool = False
83 """Indicates that the navigation object is a "page" object. Always `False` for section objects."""
84
85 is_link: bool = False
86 """Indicates that the navigation object is a "link" object. Always `False` for section objects."""
87
88 def _indent_print(self, depth: int = 0) -> str:
89 ret = [super()._indent_print(depth)]
90 for item in self.children:
91 ret.append(item._indent_print(depth + 1))
92 return '\n'.join(ret)
93
94
95 class Link(StructureItem):
96 def __init__(self, title: str, url: str):
97 self.title = title
98 self.url = url
99
100 def __repr__(self):
101 name = self.__class__.__name__
102 title = f"{self.title!r}" if self.title is not None else '[blank]'
103 return f"{name}(title={title}, url={self.url!r})"
104
105 title: str
106 """The title of the link. This would generally be used as the label of the link."""
107
108 url: str
109 """The URL that the link points to. The URL should always be an absolute URLs and
110 should not need to have `base_url` prepended."""
111
112 children: None = None
113 """Links do not contain children and the attribute is always `None`."""
114
115 active: bool = False
116 """External links cannot be "active" and the attribute is always `False`."""
117
118 is_section: bool = False
119 """Indicates that the navigation object is a "section" object. Always `False` for link objects."""
120
121 is_page: bool = False
122 """Indicates that the navigation object is a "page" object. Always `False` for link objects."""
123
124 is_link: bool = True
125 """Indicates that the navigation object is a "link" object. Always `True` for link objects."""
126
127
128 def get_navigation(files: Files, config: MkDocsConfig) -> Navigation:
129 """Build site navigation from config and files."""
130 documentation_pages = files.documentation_pages()
131 nav_config = config['nav'] or nest_paths(f.src_uri for f in documentation_pages)
132 items = _data_to_navigation(nav_config, files, config)
133 if not isinstance(items, list):
134 items = [items]
135
136 # Get only the pages from the navigation, ignoring any sections and links.
137 pages = _get_by_type(items, Page)
138
139 # Include next, previous and parent links.
140 _add_previous_and_next_links(pages)
141 _add_parent_links(items)
142
143 missing_from_config = []
144 for file in documentation_pages:
145 if file.page is None:
146 # Any documentation files not found in the nav should still have an associated page, so we
147 # create them here. The Page object will automatically be assigned to `file.page` during
148 # its creation (and this is the only way in which these page objects are accessible).
149 Page(None, file, config)
150 if file.inclusion.is_in_nav():
151 missing_from_config.append(file.src_path)
152 if missing_from_config:
153 log.log(
154 config.validation.nav.omitted_files,
155 'The following pages exist in the docs directory, but are not '
156 'included in the "nav" configuration:\n - ' + '\n - '.join(missing_from_config),
157 )
158
159 links = _get_by_type(items, Link)
160 for link in links:
161 scheme, netloc, path, query, fragment = urlsplit(link.url)
162 if scheme or netloc:
163 log.debug(f"An external link to '{link.url}' is included in the 'nav' configuration.")
164 elif link.url.startswith('/'):
165 log.log(
166 config.validation.nav.absolute_links,
167 f"An absolute path to '{link.url}' is included in the 'nav' "
168 "configuration, which presumably points to an external resource.",
169 )
170 else:
171 log.log(
172 config.validation.nav.not_found,
173 f"A relative path to '{link.url}' is included in the 'nav' "
174 "configuration, which is not found in the documentation files.",
175 )
176 return Navigation(items, pages)
177
178
179 def _data_to_navigation(data, files: Files, config: MkDocsConfig):
180 if isinstance(data, dict):
181 return [
182 _data_to_navigation((key, value), files, config)
183 if isinstance(value, str)
184 else Section(title=key, children=_data_to_navigation(value, files, config))
185 for key, value in data.items()
186 ]
187 elif isinstance(data, list):
188 return [
189 _data_to_navigation(item, files, config)[0]
190 if isinstance(item, dict) and len(item) == 1
191 else _data_to_navigation(item, files, config)
192 for item in data
193 ]
194 title, path = data if isinstance(data, tuple) else (None, data)
195 file = files.get_file_from_path(path)
196 if file:
197 if file.inclusion.is_excluded():
198 log.log(
199 min(logging.INFO, config.validation.nav.not_found),
200 f"A reference to '{file.src_path}' is included in the 'nav' "
201 "configuration, but this file is excluded from the built site.",
202 )
203 return Page(title, file, config)
204 return Link(title, path)
205
206
207 T = TypeVar('T')
208
209
210 def _get_by_type(nav, t: type[T]) -> list[T]:
211 ret = []
212 for item in nav:
213 if isinstance(item, t):
214 ret.append(item)
215 if item.children:
216 ret.extend(_get_by_type(item.children, t))
217 return ret
218
219
220 def _add_parent_links(nav) -> None:
221 for item in nav:
222 if item.is_section:
223 for child in item.children:
224 child.parent = item
225 _add_parent_links(item.children)
226
227
228 def _add_previous_and_next_links(pages: list[Page]) -> None:
229 bookended = [None, *pages, None]
230 zipped = zip(bookended[:-2], pages, bookended[2:])
231 for page0, page1, page2 in zipped:
232 page1.previous_page, page1.next_page = page0, page2
233
[end of mkdocs/structure/nav.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/mkdocs/structure/nav.py b/mkdocs/structure/nav.py
--- a/mkdocs/structure/nav.py
+++ b/mkdocs/structure/nav.py
@@ -1,6 +1,7 @@
from __future__ import annotations
import logging
+import warnings
from typing import TYPE_CHECKING, Iterator, TypeVar
from urllib.parse import urlsplit
@@ -200,6 +201,12 @@
f"A reference to '{file.src_path}' is included in the 'nav' "
"configuration, but this file is excluded from the built site.",
)
+ if file.page is not None:
+ if not isinstance(file.page, Page):
+ warnings.warn( # type: ignore[unreachable]
+ "File.page should not be set to any type other than Page", DeprecationWarning
+ )
+ return file.page
return Page(title, file, config)
return Link(title, path)
| {"golden_diff": "diff --git a/mkdocs/structure/nav.py b/mkdocs/structure/nav.py\n--- a/mkdocs/structure/nav.py\n+++ b/mkdocs/structure/nav.py\n@@ -1,6 +1,7 @@\n from __future__ import annotations\n \n import logging\n+import warnings\n from typing import TYPE_CHECKING, Iterator, TypeVar\n from urllib.parse import urlsplit\n \n@@ -200,6 +201,12 @@\n f\"A reference to '{file.src_path}' is included in the 'nav' \"\n \"configuration, but this file is excluded from the built site.\",\n )\n+ if file.page is not None:\n+ if not isinstance(file.page, Page):\n+ warnings.warn( # type: ignore[unreachable]\n+ \"File.page should not be set to any type other than Page\", DeprecationWarning\n+ )\n+ return file.page\n return Page(title, file, config)\n return Link(title, path)\n", "issue": "Allow plugins to override `Page` when populating navigation\nFollowing up on https://github.com/squidfunk/mkdocs-material/issues/5909#issuecomment-1696958973, I'm suggesting to adjust the logic that MkDocs implies to create `Page` objects from/in files, i.e., `File` objects. Currently, [`_data_to_navigation`](https://github.com/mkdocs/mkdocs/blob/master/mkdocs/structure/nav.py#L179) will always create (and thus overwrite) `Page` on everything that doesn't look like a `Link` or `Section`. Excerpt of the comment linked:\r\n\r\n> MkDocs will always generate either a [`Link` or a `Page` for a file that is not excluded](https://github.com/mkdocs/mkdocs/blob/94e9f17cd7a69e70c18ae282d55ba2f34f93c542/mkdocs/structure/nav.py#L203-L204). As you've probably noticed, the blog plugin makes use of subclasses for pages of specific types, e.g. [`Post`](https://github.com/squidfunk/mkdocs-material/blob/de0c5b7719deff6d092dc673e82af701c6f36001/src/plugins/blog/structure/__init__.py#L48), [`View`](https://github.com/squidfunk/mkdocs-material/blob/de0c5b7719deff6d092dc673e82af701c6f36001/src/plugins/blog/structure/__init__.py#L204), etc., and relations among different concepts in the plugin are managed inside the instances of those subclasses. The problem is, that __MkDocs will always generate a plain old `Page` instance, overwriting the more specific instance that has been generated by the plugin before__ [after `on_files` and before `on_nav`](https://github.com/mkdocs/mkdocs/blob/94e9f17cd7a69e70c18ae282d55ba2f34f93c542/mkdocs/commands/build.py#L303-L311). We could still solve it by splitting file generation and page instantiation, but this would make things much more complicated and non-linear, because during generation, [we already assign categories to pages and vice versa](https://github.com/squidfunk/mkdocs-material/blob/de0c5b7719deff6d092dc673e82af701c6f36001/src/plugins/blog/plugin.py#L598-L599), etc. We would need to split this into two stages, blowing up the code base of the plugin and also the runtime, as we're doing two passes. This is clearly not favorable from our perspective.\r\n>\r\n> __Moving forward__: I believe that this problem can be mitigated with a very small but important change in MkDocs: if a `File` already defines a dedicated `Page` in `file.page`, MkDocs should just use that instead of creating a new one:\r\n> \r\n> ``` py\r\n> return file.page if isinstance(file.page, Page) else Page(title, file, config)\r\n> ```\r\n>\r\n> It's essentially a single line change in MkDocs that would make things much, much simpler for plugin developers. I've written several plugins now, and I repeatedly had to work around the oddities of this behavior.\r\n\r\nThus, I'm proposing to change [the following line](https://github.com/mkdocs/mkdocs/blob/94e9f17cd7a69e70c18ae282d55ba2f34f93c542/mkdocs/structure/nav.py#L203):\r\n\r\n``` py\r\n# Now: always create a page\r\nreturn Page(title, file, config)\r\n\r\n# Better: only create a page when one was not created before\r\nreturn file.page if isinstance(file.page, Page) else Page(title, file, config)\r\n```\r\n\r\nCurrently, the only way to work around this limitation is to overwrite `Page.__class__` on the resulting instance in `on_nav`, e.g., like done in [section-index](https://github.com/oprypin/mkdocs-section-index/blob/f5414c0775848cec96f1181f74c622fe3e14985e/mkdocs_section_index/plugin.py#L33-L34), which, AFAIK, does not call `__init__` or initializes instance variables:\r\n\r\n``` py\r\npage.__class__ = CustomPage\r\nassert isinstance(page, CustomPage)\r\n```\n", "before_files": [{"content": "from __future__ import annotations\n\nimport logging\nfrom typing import TYPE_CHECKING, Iterator, TypeVar\nfrom urllib.parse import urlsplit\n\nfrom mkdocs.structure import StructureItem\nfrom mkdocs.structure.pages import Page\nfrom mkdocs.utils import nest_paths\n\nif TYPE_CHECKING:\n from mkdocs.config.defaults import MkDocsConfig\n from mkdocs.structure.files import Files\n\n\nlog = logging.getLogger(__name__)\n\n\nclass Navigation:\n def __init__(self, items: list, pages: list[Page]) -> None:\n self.items = items # Nested List with full navigation of Sections, Pages, and Links.\n self.pages = pages # Flat List of subset of Pages in nav, in order.\n\n self.homepage = None\n for page in pages:\n if page.is_homepage:\n self.homepage = page\n break\n\n homepage: Page | None\n \"\"\"The [page][mkdocs.structure.pages.Page] object for the homepage of the site.\"\"\"\n\n pages: list[Page]\n \"\"\"A flat list of all [page][mkdocs.structure.pages.Page] objects contained in the navigation.\"\"\"\n\n def __str__(self) -> str:\n return '\\n'.join(item._indent_print() for item in self)\n\n def __iter__(self) -> Iterator:\n return iter(self.items)\n\n def __len__(self) -> int:\n return len(self.items)\n\n\nclass Section(StructureItem):\n def __init__(self, title: str, children: list[StructureItem]) -> None:\n self.title = title\n self.children = children\n\n self.active = False\n\n def __repr__(self):\n name = self.__class__.__name__\n return f\"{name}(title={self.title!r})\"\n\n title: str\n \"\"\"The title of the section.\"\"\"\n\n children: list[StructureItem]\n \"\"\"An iterable of all child navigation objects. Children may include nested sections, pages and links.\"\"\"\n\n @property\n def active(self) -> bool:\n \"\"\"\n When `True`, indicates that a child page of this section is the current page and\n can be used to highlight the section as the currently viewed section. Defaults\n to `False`.\n \"\"\"\n return self.__active\n\n @active.setter\n def active(self, value: bool):\n \"\"\"Set active status of section and ancestors.\"\"\"\n self.__active = bool(value)\n if self.parent is not None:\n self.parent.active = bool(value)\n\n is_section: bool = True\n \"\"\"Indicates that the navigation object is a \"section\" object. Always `True` for section objects.\"\"\"\n\n is_page: bool = False\n \"\"\"Indicates that the navigation object is a \"page\" object. Always `False` for section objects.\"\"\"\n\n is_link: bool = False\n \"\"\"Indicates that the navigation object is a \"link\" object. Always `False` for section objects.\"\"\"\n\n def _indent_print(self, depth: int = 0) -> str:\n ret = [super()._indent_print(depth)]\n for item in self.children:\n ret.append(item._indent_print(depth + 1))\n return '\\n'.join(ret)\n\n\nclass Link(StructureItem):\n def __init__(self, title: str, url: str):\n self.title = title\n self.url = url\n\n def __repr__(self):\n name = self.__class__.__name__\n title = f\"{self.title!r}\" if self.title is not None else '[blank]'\n return f\"{name}(title={title}, url={self.url!r})\"\n\n title: str\n \"\"\"The title of the link. This would generally be used as the label of the link.\"\"\"\n\n url: str\n \"\"\"The URL that the link points to. The URL should always be an absolute URLs and\n should not need to have `base_url` prepended.\"\"\"\n\n children: None = None\n \"\"\"Links do not contain children and the attribute is always `None`.\"\"\"\n\n active: bool = False\n \"\"\"External links cannot be \"active\" and the attribute is always `False`.\"\"\"\n\n is_section: bool = False\n \"\"\"Indicates that the navigation object is a \"section\" object. Always `False` for link objects.\"\"\"\n\n is_page: bool = False\n \"\"\"Indicates that the navigation object is a \"page\" object. Always `False` for link objects.\"\"\"\n\n is_link: bool = True\n \"\"\"Indicates that the navigation object is a \"link\" object. Always `True` for link objects.\"\"\"\n\n\ndef get_navigation(files: Files, config: MkDocsConfig) -> Navigation:\n \"\"\"Build site navigation from config and files.\"\"\"\n documentation_pages = files.documentation_pages()\n nav_config = config['nav'] or nest_paths(f.src_uri for f in documentation_pages)\n items = _data_to_navigation(nav_config, files, config)\n if not isinstance(items, list):\n items = [items]\n\n # Get only the pages from the navigation, ignoring any sections and links.\n pages = _get_by_type(items, Page)\n\n # Include next, previous and parent links.\n _add_previous_and_next_links(pages)\n _add_parent_links(items)\n\n missing_from_config = []\n for file in documentation_pages:\n if file.page is None:\n # Any documentation files not found in the nav should still have an associated page, so we\n # create them here. The Page object will automatically be assigned to `file.page` during\n # its creation (and this is the only way in which these page objects are accessible).\n Page(None, file, config)\n if file.inclusion.is_in_nav():\n missing_from_config.append(file.src_path)\n if missing_from_config:\n log.log(\n config.validation.nav.omitted_files,\n 'The following pages exist in the docs directory, but are not '\n 'included in the \"nav\" configuration:\\n - ' + '\\n - '.join(missing_from_config),\n )\n\n links = _get_by_type(items, Link)\n for link in links:\n scheme, netloc, path, query, fragment = urlsplit(link.url)\n if scheme or netloc:\n log.debug(f\"An external link to '{link.url}' is included in the 'nav' configuration.\")\n elif link.url.startswith('/'):\n log.log(\n config.validation.nav.absolute_links,\n f\"An absolute path to '{link.url}' is included in the 'nav' \"\n \"configuration, which presumably points to an external resource.\",\n )\n else:\n log.log(\n config.validation.nav.not_found,\n f\"A relative path to '{link.url}' is included in the 'nav' \"\n \"configuration, which is not found in the documentation files.\",\n )\n return Navigation(items, pages)\n\n\ndef _data_to_navigation(data, files: Files, config: MkDocsConfig):\n if isinstance(data, dict):\n return [\n _data_to_navigation((key, value), files, config)\n if isinstance(value, str)\n else Section(title=key, children=_data_to_navigation(value, files, config))\n for key, value in data.items()\n ]\n elif isinstance(data, list):\n return [\n _data_to_navigation(item, files, config)[0]\n if isinstance(item, dict) and len(item) == 1\n else _data_to_navigation(item, files, config)\n for item in data\n ]\n title, path = data if isinstance(data, tuple) else (None, data)\n file = files.get_file_from_path(path)\n if file:\n if file.inclusion.is_excluded():\n log.log(\n min(logging.INFO, config.validation.nav.not_found),\n f\"A reference to '{file.src_path}' is included in the 'nav' \"\n \"configuration, but this file is excluded from the built site.\",\n )\n return Page(title, file, config)\n return Link(title, path)\n\n\nT = TypeVar('T')\n\n\ndef _get_by_type(nav, t: type[T]) -> list[T]:\n ret = []\n for item in nav:\n if isinstance(item, t):\n ret.append(item)\n if item.children:\n ret.extend(_get_by_type(item.children, t))\n return ret\n\n\ndef _add_parent_links(nav) -> None:\n for item in nav:\n if item.is_section:\n for child in item.children:\n child.parent = item\n _add_parent_links(item.children)\n\n\ndef _add_previous_and_next_links(pages: list[Page]) -> None:\n bookended = [None, *pages, None]\n zipped = zip(bookended[:-2], pages, bookended[2:])\n for page0, page1, page2 in zipped:\n page1.previous_page, page1.next_page = page0, page2\n", "path": "mkdocs/structure/nav.py"}]} | 4,086 | 211 |
gh_patches_debug_57501 | rasdani/github-patches | git_diff | dotkom__onlineweb4-1652 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Application for extending membership marks field of study as guest
When someone applies to get their membership prolonged their field of study is set to "guest" instead of what they previously were registered as.
</issue>
<code>
[start of apps/approval/views.py]
1 # -*- encoding: utf-8 -*-
2
3 import datetime
4
5 from django.contrib import messages
6 from django.contrib.auth.decorators import login_required
7 from django.http import Http404
8 from django.shortcuts import get_object_or_404, redirect
9 from django.utils import timezone
10 from django.utils.translation import ugettext as _
11
12 from apps.approval.forms import FieldOfStudyApplicationForm
13 from apps.approval.models import MembershipApproval
14 from apps.authentication.models import AllowedUsername, get_length_of_field_of_study
15
16
17 @login_required
18 def create_fos_application(request):
19 if request.method == 'POST':
20 if not request.user.ntnu_username:
21 messages.error(request, _("Du må knytte et NTNU-brukernavn til kontoen din."))
22 return redirect('profiles_active', active_tab='membership')
23
24 form = FieldOfStudyApplicationForm(request.POST)
25 if form.is_valid():
26 cleaned = form.cleaned_data
27
28 field_of_study = int(cleaned['field_of_study'])
29
30 if field_of_study == 0:
31 messages.warning(request, _("Denne studieretningen (Gjest) er ikke et gyldig alternativ."))
32 return redirect('profiles_active', active_tab='membership')
33
34 started_day = 1
35 started_month = 0
36 started_year = int(cleaned['started_year'])
37
38 if cleaned['started_semester'] == "h":
39 started_month = 7
40 if cleaned['started_semester'] == "v":
41 started_month = 1
42
43 started_date = datetime.date(started_year, started_month, started_day)
44
45 # Does the user already have a field of study and started date?
46 if request.user.started_date and request.user.field_of_study:
47 # If there is no change from the current settings, ignore the request
48 if request.user.started_date == started_date and request.user.field_of_study == field_of_study:
49 messages.error(
50 request,
51 _("Du er allerede registrert med denne studieretningen og denne startdatoen.")
52 )
53 return redirect('profiles_active', active_tab='membership')
54
55 application = MembershipApproval(
56 applicant=request.user,
57 field_of_study=field_of_study,
58 started_date=started_date
59 )
60
61 length_of_fos = get_length_of_field_of_study(field_of_study)
62 if length_of_fos > 0:
63 application.new_expiry_date = get_expiry_date(started_year, length_of_fos)
64 application.save()
65
66 messages.success(request, _("Søknad om bytte av studieretning er sendt."))
67
68 return redirect('profiles_active', active_tab='membership')
69 raise Http404
70
71
72 def get_expiry_date(started_year, length_of_fos):
73 today = timezone.now().date()
74 # Expiry dates should be 15th September, so that we have time to get new lists from NTNU
75 new_expiry_date = datetime.date(
76 started_year, 9, 16) + datetime.timedelta(days=365*length_of_fos)
77 # Expiry dates in the past sets the expiry date to next september
78 if new_expiry_date < today:
79 if today < datetime.date(today.year, 9, 15):
80 new_expiry_date = datetime.date(today.year, 9, 15)
81 else:
82 new_expiry_date = datetime.date(
83 today.year, 9, 16) + datetime.timedelta(days=365)
84 return new_expiry_date
85
86
87 @login_required
88 def create_membership_application(request):
89 if request.method == 'POST':
90 if not request.user.has_expiring_membership:
91 messages.error(request, _("Din bruker har ikke et utløpende medlemskap."))
92 return redirect('profiles_active', active_tab='membership')
93
94 if not request.user.ntnu_username:
95 messages.error(request, _("Du må knytte et NTNU-brukernavn til kontoen din."))
96 return redirect('profiles_active', active_tab='membership')
97
98 # Extend length of membership by 1 year
99 membership = AllowedUsername.objects.get(username=request.user.ntnu_username)
100 new_expiration_date = datetime.date(membership.expiration_date.year + 1, 9, 16)
101
102 application = MembershipApproval(
103 applicant=request.user,
104 new_expiry_date=new_expiration_date,
105 )
106 application.save()
107
108 messages.success(request, _("Søknad om ett års forlenget medlemskap er sendt."))
109
110 return redirect('profiles_active', active_tab='membership')
111 raise Http404
112
113
114 @login_required
115 def cancel_application(request, application_id):
116 app = get_object_or_404(MembershipApproval, pk=application_id)
117
118 if app.applicant != request.user:
119 messages.error(request, _("Bare søkeren selv kan slette en søknad."))
120 return redirect('profiles_active', active_tab='membership')
121
122 if app.processed:
123 messages.error(request, _("Denne søknaden er behandlet og kan ikke slettes."))
124 return redirect('profiles_active', active_tab='membership')
125
126 app.delete()
127
128 return redirect('profiles_active', active_tab='membership')
129
[end of apps/approval/views.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/apps/approval/views.py b/apps/approval/views.py
--- a/apps/approval/views.py
+++ b/apps/approval/views.py
@@ -101,6 +101,7 @@
application = MembershipApproval(
applicant=request.user,
+ field_of_study=request.user.field_of_study,
new_expiry_date=new_expiration_date,
)
application.save()
| {"golden_diff": "diff --git a/apps/approval/views.py b/apps/approval/views.py\n--- a/apps/approval/views.py\n+++ b/apps/approval/views.py\n@@ -101,6 +101,7 @@\n \n application = MembershipApproval(\n applicant=request.user,\n+ field_of_study=request.user.field_of_study,\n new_expiry_date=new_expiration_date,\n )\n application.save()\n", "issue": "Application for extending membership marks field of study as guest\nWhen someone applies to get their membership prolonged their field of study is set to \"guest\" instead of what they previously were registered as. \n\n", "before_files": [{"content": "# -*- encoding: utf-8 -*-\n\nimport datetime\n\nfrom django.contrib import messages\nfrom django.contrib.auth.decorators import login_required\nfrom django.http import Http404\nfrom django.shortcuts import get_object_or_404, redirect\nfrom django.utils import timezone\nfrom django.utils.translation import ugettext as _\n\nfrom apps.approval.forms import FieldOfStudyApplicationForm\nfrom apps.approval.models import MembershipApproval\nfrom apps.authentication.models import AllowedUsername, get_length_of_field_of_study\n\n\n@login_required\ndef create_fos_application(request):\n if request.method == 'POST':\n if not request.user.ntnu_username:\n messages.error(request, _(\"Du m\u00e5 knytte et NTNU-brukernavn til kontoen din.\"))\n return redirect('profiles_active', active_tab='membership')\n\n form = FieldOfStudyApplicationForm(request.POST)\n if form.is_valid():\n cleaned = form.cleaned_data\n\n field_of_study = int(cleaned['field_of_study'])\n\n if field_of_study == 0:\n messages.warning(request, _(\"Denne studieretningen (Gjest) er ikke et gyldig alternativ.\"))\n return redirect('profiles_active', active_tab='membership')\n\n started_day = 1\n started_month = 0\n started_year = int(cleaned['started_year'])\n\n if cleaned['started_semester'] == \"h\":\n started_month = 7\n if cleaned['started_semester'] == \"v\":\n started_month = 1\n\n started_date = datetime.date(started_year, started_month, started_day)\n\n # Does the user already have a field of study and started date?\n if request.user.started_date and request.user.field_of_study:\n # If there is no change from the current settings, ignore the request\n if request.user.started_date == started_date and request.user.field_of_study == field_of_study:\n messages.error(\n request,\n _(\"Du er allerede registrert med denne studieretningen og denne startdatoen.\")\n )\n return redirect('profiles_active', active_tab='membership')\n\n application = MembershipApproval(\n applicant=request.user,\n field_of_study=field_of_study,\n started_date=started_date\n )\n\n length_of_fos = get_length_of_field_of_study(field_of_study)\n if length_of_fos > 0:\n application.new_expiry_date = get_expiry_date(started_year, length_of_fos)\n application.save()\n\n messages.success(request, _(\"S\u00f8knad om bytte av studieretning er sendt.\"))\n\n return redirect('profiles_active', active_tab='membership')\n raise Http404\n\n\ndef get_expiry_date(started_year, length_of_fos):\n today = timezone.now().date()\n # Expiry dates should be 15th September, so that we have time to get new lists from NTNU\n new_expiry_date = datetime.date(\n started_year, 9, 16) + datetime.timedelta(days=365*length_of_fos)\n # Expiry dates in the past sets the expiry date to next september\n if new_expiry_date < today:\n if today < datetime.date(today.year, 9, 15):\n new_expiry_date = datetime.date(today.year, 9, 15)\n else:\n new_expiry_date = datetime.date(\n today.year, 9, 16) + datetime.timedelta(days=365)\n return new_expiry_date\n\n\n@login_required\ndef create_membership_application(request):\n if request.method == 'POST':\n if not request.user.has_expiring_membership:\n messages.error(request, _(\"Din bruker har ikke et utl\u00f8pende medlemskap.\"))\n return redirect('profiles_active', active_tab='membership')\n\n if not request.user.ntnu_username:\n messages.error(request, _(\"Du m\u00e5 knytte et NTNU-brukernavn til kontoen din.\"))\n return redirect('profiles_active', active_tab='membership')\n\n # Extend length of membership by 1 year\n membership = AllowedUsername.objects.get(username=request.user.ntnu_username)\n new_expiration_date = datetime.date(membership.expiration_date.year + 1, 9, 16)\n\n application = MembershipApproval(\n applicant=request.user,\n new_expiry_date=new_expiration_date,\n )\n application.save()\n\n messages.success(request, _(\"S\u00f8knad om ett \u00e5rs forlenget medlemskap er sendt.\"))\n\n return redirect('profiles_active', active_tab='membership')\n raise Http404\n\n\n@login_required\ndef cancel_application(request, application_id):\n app = get_object_or_404(MembershipApproval, pk=application_id)\n\n if app.applicant != request.user:\n messages.error(request, _(\"Bare s\u00f8keren selv kan slette en s\u00f8knad.\"))\n return redirect('profiles_active', active_tab='membership')\n\n if app.processed:\n messages.error(request, _(\"Denne s\u00f8knaden er behandlet og kan ikke slettes.\"))\n return redirect('profiles_active', active_tab='membership')\n\n app.delete()\n\n return redirect('profiles_active', active_tab='membership')\n", "path": "apps/approval/views.py"}]} | 1,973 | 88 |
gh_patches_debug_20405 | rasdani/github-patches | git_diff | fedora-infra__bodhi-4326 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Sometimes automatic updates miss changelog
For unknown reason, sometimes Koji is reporting empty rpm headers, so the automatic updates are missing the changelog and bugs aren't attached.
This seems the same cause of https://github.com/fedora-infra/bodhi/issues/4146
I've opened a ticket to Koji to try to find the root cause https://pagure.io/koji/issue/3178
</issue>
<code>
[start of bodhi/server/consumers/automatic_updates.py]
1 # Copyright © 2019 Red Hat, Inc. and others.
2 #
3 # This file is part of Bodhi.
4 #
5 # This program is free software; you can redistribute it and/or
6 # modify it under the terms of the GNU General Public License
7 # as published by the Free Software Foundation; either version 2
8 # of the License, or (at your option) any later version.
9 #
10 # This program is distributed in the hope that it will be useful,
11 # but WITHOUT ANY WARRANTY; without even the implied warranty of
12 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
13 # GNU General Public License for more details.
14 #
15 # You should have received a copy of the GNU General Public License along with
16 # this program; if not, write to the Free Software Foundation, Inc., 51
17 # Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.
18 """
19 The Bodhi handler that creates updates automatically from tagged builds.
20
21 This module is responsible for the process of creating updates when builds are
22 tagged with certain tags.
23 """
24
25 import logging
26 import re
27
28 import fedora_messaging
29
30 from bodhi.server import buildsys
31 from bodhi.server.config import config
32 from bodhi.server.models import (
33 Bug, Build, ContentType, Package, Release, Update, UpdateStatus, UpdateType, User)
34 from bodhi.server.tasks import work_on_bugs_task
35 from bodhi.server.util import transactional_session_maker
36
37 log = logging.getLogger('bodhi')
38
39
40 class AutomaticUpdateHandler:
41 """
42 The Bodhi Automatic Update Handler.
43
44 A consumer that listens for messages about tagged builds and creates
45 updates from them.
46 """
47
48 def __init__(self, db_factory: transactional_session_maker = None):
49 """
50 Initialize the Automatic Update Handler.
51
52 Args:
53 db_factory: If given, used as the db_factory for this handler. If
54 None (the default), a new TransactionalSessionMaker is created and
55 used.
56 """
57 if not db_factory:
58 self.db_factory = transactional_session_maker()
59 else:
60 self.db_factory = db_factory
61
62 def __call__(self, message: fedora_messaging.api.Message) -> None:
63 """Create updates from appropriately tagged builds.
64
65 Args:
66 message: The message we are processing.
67 """
68 body = message.body
69
70 missing = []
71 for mandatory in ('tag', 'build_id', 'name', 'version', 'release'):
72 if mandatory not in body:
73 missing.append(mandatory)
74 if missing:
75 log.debug(f"Received incomplete tag message. Missing: {', '.join(missing)}")
76 return
77
78 btag = body['tag']
79 bnvr = '{name}-{version}-{release}'.format(**body)
80
81 koji = buildsys.get_session()
82
83 kbuildinfo = koji.getBuild(bnvr)
84 if not kbuildinfo:
85 log.debug(f"Can't find Koji build for {bnvr}.")
86 return
87
88 if 'nvr' not in kbuildinfo:
89 log.debug(f"Koji build info for {bnvr} doesn't contain 'nvr'.")
90 return
91
92 if 'owner_name' not in kbuildinfo:
93 log.debug(f"Koji build info for {bnvr} doesn't contain 'owner_name'.")
94 return
95
96 if kbuildinfo['owner_name'] in config.get('automatic_updates_blacklist'):
97 log.debug(f"{bnvr} owned by {kbuildinfo['owner_name']} who is listed in "
98 "automatic_updates_blacklist, skipping.")
99 return
100
101 # some APIs want the Koji build info, some others want the same
102 # wrapped in a larger (request?) structure
103 rbuildinfo = {
104 'info': kbuildinfo,
105 'nvr': kbuildinfo['nvr'].rsplit('-', 2),
106 }
107
108 with self.db_factory() as dbsession:
109 rel = dbsession.query(Release).filter_by(create_automatic_updates=True,
110 candidate_tag=btag).first()
111 if not rel:
112 log.debug(f"Ignoring build being tagged into {btag!r}, no release configured for "
113 "automatic updates for it found.")
114 return
115
116 bcls = ContentType.infer_content_class(Build, kbuildinfo)
117 build = bcls.get(bnvr)
118 if build and build.update:
119 log.info(f"Build, active update for {bnvr} exists already, skipping.")
120 return
121
122 utype = (
123 UpdateType.unspecified if Package.check_existence(rbuildinfo)
124 else UpdateType.newpackage
125 )
126
127 if not build:
128 log.debug(f"Build for {bnvr} doesn't exist yet, creating.")
129
130 # Package.get_or_create() infers content type already
131 log.debug("Getting/creating related package object.")
132 pkg = Package.get_or_create(dbsession, rbuildinfo)
133
134 log.debug("Creating build object, adding it to the DB.")
135 build = bcls(nvr=bnvr, package=pkg, release=rel)
136 dbsession.add(build)
137
138 owner_name = kbuildinfo['owner_name']
139 user = User.get(owner_name)
140 if not user:
141 log.debug(f"Creating bodhi user for '{owner_name}'.")
142 # Leave email, groups blank, these will be filled
143 # in or updated when they log into Bodhi next time, see
144 # bodhi.server.security:remember_me().
145 user = User(name=owner_name)
146 dbsession.add(user)
147
148 log.debug(f"Creating new update for {bnvr}.")
149 try:
150 changelog = build.get_changelog(lastupdate=True)
151 except ValueError:
152 # Often due to bot-generated builds
153 # https://github.com/fedora-infra/bodhi/issues/4146
154 changelog = None
155 except Exception:
156 # Re-raise exception, so that the message can be re-queued
157 raise
158 closing_bugs = []
159 if changelog:
160 log.debug("Adding changelog to update notes.")
161 notes = f"""Automatic update for {bnvr}.
162
163 ##### **Changelog**
164
165 ```
166 {changelog}
167 ```"""
168
169 if rel.name not in config.get('bz_exclude_rels'):
170 for b in re.finditer(config.get('bz_regex'), changelog, re.IGNORECASE):
171 idx = int(b.group(1))
172 log.debug(f'Adding bug #{idx} to the update.')
173 bug = Bug.get(idx)
174 if bug is None:
175 bug = Bug(bug_id=idx)
176 dbsession.add(bug)
177 dbsession.flush()
178 if bug not in closing_bugs:
179 closing_bugs.append(bug)
180 else:
181 notes = f"Automatic update for {bnvr}."
182 update = Update(
183 release=rel,
184 builds=[build],
185 bugs=closing_bugs,
186 notes=notes,
187 type=utype,
188 stable_karma=3,
189 unstable_karma=-3,
190 autokarma=False,
191 user=user,
192 status=UpdateStatus.pending,
193 critpath=Update.contains_critpath_component([build], rel.branch),
194 )
195
196 # Comment on the update that it was automatically created.
197 update.comment(
198 dbsession,
199 str("This update was automatically created"),
200 author="bodhi",
201 )
202
203 update.add_tag(update.release.pending_signing_tag)
204
205 log.debug("Adding new update to the database.")
206 dbsession.add(update)
207
208 log.debug("Flushing changes to the database.")
209 dbsession.flush()
210
211 # Obsolete older updates which may be stuck in testing due to failed gating
212 try:
213 update.obsolete_older_updates(dbsession)
214 except Exception as e:
215 log.error(f'Problem obsoleting older updates: {e}')
216
217 alias = update.alias
218 buglist = [b.bug_id for b in update.bugs]
219
220 # This must be run after dbsession is closed so changes are committed to db
221 work_on_bugs_task.delay(alias, buglist)
222
[end of bodhi/server/consumers/automatic_updates.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/bodhi/server/consumers/automatic_updates.py b/bodhi/server/consumers/automatic_updates.py
--- a/bodhi/server/consumers/automatic_updates.py
+++ b/bodhi/server/consumers/automatic_updates.py
@@ -22,6 +22,7 @@
tagged with certain tags.
"""
+from time import sleep
import logging
import re
@@ -148,10 +149,13 @@
log.debug(f"Creating new update for {bnvr}.")
try:
changelog = build.get_changelog(lastupdate=True)
- except ValueError:
+ except ValueError as e:
# Often due to bot-generated builds
- # https://github.com/fedora-infra/bodhi/issues/4146
- changelog = None
+ # https://pagure.io/koji/issue/3178
+ log.warning(str(e))
+ sleep(5)
+ # Re-raise exception, so that the message can be re-queued
+ raise
except Exception:
# Re-raise exception, so that the message can be re-queued
raise
| {"golden_diff": "diff --git a/bodhi/server/consumers/automatic_updates.py b/bodhi/server/consumers/automatic_updates.py\n--- a/bodhi/server/consumers/automatic_updates.py\n+++ b/bodhi/server/consumers/automatic_updates.py\n@@ -22,6 +22,7 @@\n tagged with certain tags.\n \"\"\"\n \n+from time import sleep\n import logging\n import re\n \n@@ -148,10 +149,13 @@\n log.debug(f\"Creating new update for {bnvr}.\")\n try:\n changelog = build.get_changelog(lastupdate=True)\n- except ValueError:\n+ except ValueError as e:\n # Often due to bot-generated builds\n- # https://github.com/fedora-infra/bodhi/issues/4146\n- changelog = None\n+ # https://pagure.io/koji/issue/3178\n+ log.warning(str(e))\n+ sleep(5)\n+ # Re-raise exception, so that the message can be re-queued\n+ raise\n except Exception:\n # Re-raise exception, so that the message can be re-queued\n raise\n", "issue": "Sometimes automatic updates miss changelog\nFor unknown reason, sometimes Koji is reporting empty rpm headers, so the automatic updates are missing the changelog and bugs aren't attached.\r\n\r\nThis seems the same cause of https://github.com/fedora-infra/bodhi/issues/4146\r\n\r\nI've opened a ticket to Koji to try to find the root cause https://pagure.io/koji/issue/3178\n", "before_files": [{"content": "# Copyright \u00a9 2019 Red Hat, Inc. and others.\n#\n# This file is part of Bodhi.\n#\n# This program is free software; you can redistribute it and/or\n# modify it under the terms of the GNU General Public License\n# as published by the Free Software Foundation; either version 2\n# of the License, or (at your option) any later version.\n#\n# This program is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n# GNU General Public License for more details.\n#\n# You should have received a copy of the GNU General Public License along with\n# this program; if not, write to the Free Software Foundation, Inc., 51\n# Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA.\n\"\"\"\nThe Bodhi handler that creates updates automatically from tagged builds.\n\nThis module is responsible for the process of creating updates when builds are\ntagged with certain tags.\n\"\"\"\n\nimport logging\nimport re\n\nimport fedora_messaging\n\nfrom bodhi.server import buildsys\nfrom bodhi.server.config import config\nfrom bodhi.server.models import (\n Bug, Build, ContentType, Package, Release, Update, UpdateStatus, UpdateType, User)\nfrom bodhi.server.tasks import work_on_bugs_task\nfrom bodhi.server.util import transactional_session_maker\n\nlog = logging.getLogger('bodhi')\n\n\nclass AutomaticUpdateHandler:\n \"\"\"\n The Bodhi Automatic Update Handler.\n\n A consumer that listens for messages about tagged builds and creates\n updates from them.\n \"\"\"\n\n def __init__(self, db_factory: transactional_session_maker = None):\n \"\"\"\n Initialize the Automatic Update Handler.\n\n Args:\n db_factory: If given, used as the db_factory for this handler. If\n None (the default), a new TransactionalSessionMaker is created and\n used.\n \"\"\"\n if not db_factory:\n self.db_factory = transactional_session_maker()\n else:\n self.db_factory = db_factory\n\n def __call__(self, message: fedora_messaging.api.Message) -> None:\n \"\"\"Create updates from appropriately tagged builds.\n\n Args:\n message: The message we are processing.\n \"\"\"\n body = message.body\n\n missing = []\n for mandatory in ('tag', 'build_id', 'name', 'version', 'release'):\n if mandatory not in body:\n missing.append(mandatory)\n if missing:\n log.debug(f\"Received incomplete tag message. Missing: {', '.join(missing)}\")\n return\n\n btag = body['tag']\n bnvr = '{name}-{version}-{release}'.format(**body)\n\n koji = buildsys.get_session()\n\n kbuildinfo = koji.getBuild(bnvr)\n if not kbuildinfo:\n log.debug(f\"Can't find Koji build for {bnvr}.\")\n return\n\n if 'nvr' not in kbuildinfo:\n log.debug(f\"Koji build info for {bnvr} doesn't contain 'nvr'.\")\n return\n\n if 'owner_name' not in kbuildinfo:\n log.debug(f\"Koji build info for {bnvr} doesn't contain 'owner_name'.\")\n return\n\n if kbuildinfo['owner_name'] in config.get('automatic_updates_blacklist'):\n log.debug(f\"{bnvr} owned by {kbuildinfo['owner_name']} who is listed in \"\n \"automatic_updates_blacklist, skipping.\")\n return\n\n # some APIs want the Koji build info, some others want the same\n # wrapped in a larger (request?) structure\n rbuildinfo = {\n 'info': kbuildinfo,\n 'nvr': kbuildinfo['nvr'].rsplit('-', 2),\n }\n\n with self.db_factory() as dbsession:\n rel = dbsession.query(Release).filter_by(create_automatic_updates=True,\n candidate_tag=btag).first()\n if not rel:\n log.debug(f\"Ignoring build being tagged into {btag!r}, no release configured for \"\n \"automatic updates for it found.\")\n return\n\n bcls = ContentType.infer_content_class(Build, kbuildinfo)\n build = bcls.get(bnvr)\n if build and build.update:\n log.info(f\"Build, active update for {bnvr} exists already, skipping.\")\n return\n\n utype = (\n UpdateType.unspecified if Package.check_existence(rbuildinfo)\n else UpdateType.newpackage\n )\n\n if not build:\n log.debug(f\"Build for {bnvr} doesn't exist yet, creating.\")\n\n # Package.get_or_create() infers content type already\n log.debug(\"Getting/creating related package object.\")\n pkg = Package.get_or_create(dbsession, rbuildinfo)\n\n log.debug(\"Creating build object, adding it to the DB.\")\n build = bcls(nvr=bnvr, package=pkg, release=rel)\n dbsession.add(build)\n\n owner_name = kbuildinfo['owner_name']\n user = User.get(owner_name)\n if not user:\n log.debug(f\"Creating bodhi user for '{owner_name}'.\")\n # Leave email, groups blank, these will be filled\n # in or updated when they log into Bodhi next time, see\n # bodhi.server.security:remember_me().\n user = User(name=owner_name)\n dbsession.add(user)\n\n log.debug(f\"Creating new update for {bnvr}.\")\n try:\n changelog = build.get_changelog(lastupdate=True)\n except ValueError:\n # Often due to bot-generated builds\n # https://github.com/fedora-infra/bodhi/issues/4146\n changelog = None\n except Exception:\n # Re-raise exception, so that the message can be re-queued\n raise\n closing_bugs = []\n if changelog:\n log.debug(\"Adding changelog to update notes.\")\n notes = f\"\"\"Automatic update for {bnvr}.\n\n##### **Changelog**\n\n```\n{changelog}\n```\"\"\"\n\n if rel.name not in config.get('bz_exclude_rels'):\n for b in re.finditer(config.get('bz_regex'), changelog, re.IGNORECASE):\n idx = int(b.group(1))\n log.debug(f'Adding bug #{idx} to the update.')\n bug = Bug.get(idx)\n if bug is None:\n bug = Bug(bug_id=idx)\n dbsession.add(bug)\n dbsession.flush()\n if bug not in closing_bugs:\n closing_bugs.append(bug)\n else:\n notes = f\"Automatic update for {bnvr}.\"\n update = Update(\n release=rel,\n builds=[build],\n bugs=closing_bugs,\n notes=notes,\n type=utype,\n stable_karma=3,\n unstable_karma=-3,\n autokarma=False,\n user=user,\n status=UpdateStatus.pending,\n critpath=Update.contains_critpath_component([build], rel.branch),\n )\n\n # Comment on the update that it was automatically created.\n update.comment(\n dbsession,\n str(\"This update was automatically created\"),\n author=\"bodhi\",\n )\n\n update.add_tag(update.release.pending_signing_tag)\n\n log.debug(\"Adding new update to the database.\")\n dbsession.add(update)\n\n log.debug(\"Flushing changes to the database.\")\n dbsession.flush()\n\n # Obsolete older updates which may be stuck in testing due to failed gating\n try:\n update.obsolete_older_updates(dbsession)\n except Exception as e:\n log.error(f'Problem obsoleting older updates: {e}')\n\n alias = update.alias\n buglist = [b.bug_id for b in update.bugs]\n\n # This must be run after dbsession is closed so changes are committed to db\n work_on_bugs_task.delay(alias, buglist)\n", "path": "bodhi/server/consumers/automatic_updates.py"}]} | 2,929 | 260 |
gh_patches_debug_24042 | rasdani/github-patches | git_diff | liqd__a4-meinberlin-4112 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
user front end: make username in idea list bold
**URL:** https://meinberlin-dev.liqd.net/projekte/brainstorming-2/
**user:** any
**expected behaviour:**
**behaviour:** better distinguish username and date of creation/editing. e.g. by making the username bolt as we do in idea detail view
**important screensize:**
**device & browser:**
**Comment/Question:**
Screenshot?
<img width="639" alt="Bildschirmfoto 2021-12-16 um 12 14 35" src="https://user-images.githubusercontent.com/35491681/146361740-cf6915cf-bef4-497d-83f5-6e8cf1154ddb.png">
testing 5024: filter bar above list on smaller screens
**URL:** https://meinberlin-dev.liqd.net/projekte/burgerhaushalt-spandau/?mode=list
**user:** any
**expected behaviour:**
**behaviour:** on screens smaller than 1200: list/map switch, sorting and filter don't look the same as old list, although old list also doesn't look good between around 850 and 1100
**important screensize:**
**device & browser:**
**Comment/Question:** or should we change that when touching the filter again? not sure though when that will be so maybe now make it look good?
Screenshot?
<img width="439" alt="Bildschirmfoto 2021-12-20 um 18 03 19" src="https://user-images.githubusercontent.com/35491681/146957441-4e6c4f98-609e-4d85-a21b-a7d2b6964909.png">
</issue>
<code>
[start of meinberlin/apps/budgeting/api.py]
1 from django.utils.translation import get_language
2 from django.utils.translation import gettext_lazy as _
3 from django_filters.rest_framework import DjangoFilterBackend
4 from rest_framework import mixins
5 from rest_framework import viewsets
6 from rest_framework.filters import OrderingFilter
7 from rest_framework.pagination import PageNumberPagination
8
9 from adhocracy4.api.mixins import ModuleMixin
10 from adhocracy4.api.permissions import ViewSetRulesPermission
11 from adhocracy4.categories import get_category_icon_url
12 from adhocracy4.categories import has_icons
13 from adhocracy4.categories.models import Category
14 from meinberlin.apps.contrib.filters import IdeaCategoryFilterBackend
15 from meinberlin.apps.votes.api import VotingTokenInfoMixin
16
17 from .models import Proposal
18 from .serializers import ProposalSerializer
19
20
21 # To be changed to a more general IdeaPagination, when using
22 # pagination via rest api for more idea lists
23 class ProposalPagination(PageNumberPagination):
24 page_size = 15
25
26 def get_paginated_response(self, data):
27 response = super(ProposalPagination, self).get_paginated_response(data)
28 response.data['page_size'] = self.page_size
29 response.data['page_count'] = self.page.paginator.num_pages
30 return response
31
32
33 class LocaleInfoMixin:
34 def list(self, request, *args, **kwargs):
35 response = super().list(request, args, kwargs)
36 response.data['locale'] = get_language()
37 return response
38
39
40 class ProposalFilterInfoMixin(ModuleMixin):
41 def list(self, request, *args, **kwargs):
42 """Add the filter information to the data of the Proposal API.
43
44 Needs to be used with rest_framework.mixins.ListModelMixin
45 """
46 filters = {}
47
48 ordering_choices = [('-created', _('Most recent')), ]
49 if self.module.has_feature('rate', Proposal):
50 ordering_choices += ('-positive_rating_count', _('Most popular')),
51 ordering_choices += ('-comment_count', _('Most commented')),
52
53 filters['ordering'] = {
54 'label': _('Ordering'),
55 'choices': ordering_choices,
56 'default': '-created',
57 }
58
59 categories = Category.objects.filter(
60 module=self.module
61 )
62 if categories:
63 category_choices = [('', _('All')), ]
64 if has_icons(self.module):
65 category_icons = []
66 for category in categories:
67 category_choices += (str(category.pk), category.name),
68 if has_icons(self.module):
69 icon_name = getattr(category, 'icon', None)
70 icon_url = get_category_icon_url(icon_name)
71 category_icons += (str(category.pk), icon_url),
72
73 filters['category'] = {
74 'label': _('Category'),
75 'choices': category_choices,
76 }
77 if has_icons(self.module):
78 filters['category']['icons'] = category_icons
79
80 filters['is_archived'] = {
81 'label': _('Archived'),
82 'choices': [
83 ('', _('All')),
84 ('false', _('No')),
85 ('true', _('Yes')),
86 ],
87 'default': 'false',
88 }
89
90 response = super().list(request, args, kwargs)
91 response.data['filters'] = filters
92 return response
93
94
95 class ProposalViewSet(ProposalFilterInfoMixin,
96 LocaleInfoMixin,
97 VotingTokenInfoMixin,
98 mixins.ListModelMixin,
99 viewsets.GenericViewSet,
100 ):
101
102 pagination_class = ProposalPagination
103 serializer_class = ProposalSerializer
104 permission_classes = (ViewSetRulesPermission,)
105 filter_backends = (DjangoFilterBackend,
106 OrderingFilter,
107 IdeaCategoryFilterBackend,)
108 filter_fields = ('is_archived', 'category',)
109 ordering_fields = ('created',
110 'comment_count',
111 'positive_rating_count',)
112
113 def get_permission_object(self):
114 return self.module
115
116 def get_queryset(self):
117 proposals = Proposal.objects\
118 .filter(module=self.module) \
119 .annotate_comment_count() \
120 .annotate_positive_rating_count() \
121 .annotate_negative_rating_count() \
122 .order_by('-created')
123 return proposals
124
[end of meinberlin/apps/budgeting/api.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/meinberlin/apps/budgeting/api.py b/meinberlin/apps/budgeting/api.py
--- a/meinberlin/apps/budgeting/api.py
+++ b/meinberlin/apps/budgeting/api.py
@@ -45,17 +45,6 @@
"""
filters = {}
- ordering_choices = [('-created', _('Most recent')), ]
- if self.module.has_feature('rate', Proposal):
- ordering_choices += ('-positive_rating_count', _('Most popular')),
- ordering_choices += ('-comment_count', _('Most commented')),
-
- filters['ordering'] = {
- 'label': _('Ordering'),
- 'choices': ordering_choices,
- 'default': '-created',
- }
-
categories = Category.objects.filter(
module=self.module
)
@@ -87,6 +76,17 @@
'default': 'false',
}
+ ordering_choices = [('-created', _('Most recent')), ]
+ if self.module.has_feature('rate', Proposal):
+ ordering_choices += ('-positive_rating_count', _('Most popular')),
+ ordering_choices += ('-comment_count', _('Most commented')),
+
+ filters['ordering'] = {
+ 'label': _('Ordering'),
+ 'choices': ordering_choices,
+ 'default': '-created',
+ }
+
response = super().list(request, args, kwargs)
response.data['filters'] = filters
return response
| {"golden_diff": "diff --git a/meinberlin/apps/budgeting/api.py b/meinberlin/apps/budgeting/api.py\n--- a/meinberlin/apps/budgeting/api.py\n+++ b/meinberlin/apps/budgeting/api.py\n@@ -45,17 +45,6 @@\n \"\"\"\n filters = {}\n \n- ordering_choices = [('-created', _('Most recent')), ]\n- if self.module.has_feature('rate', Proposal):\n- ordering_choices += ('-positive_rating_count', _('Most popular')),\n- ordering_choices += ('-comment_count', _('Most commented')),\n-\n- filters['ordering'] = {\n- 'label': _('Ordering'),\n- 'choices': ordering_choices,\n- 'default': '-created',\n- }\n-\n categories = Category.objects.filter(\n module=self.module\n )\n@@ -87,6 +76,17 @@\n 'default': 'false',\n }\n \n+ ordering_choices = [('-created', _('Most recent')), ]\n+ if self.module.has_feature('rate', Proposal):\n+ ordering_choices += ('-positive_rating_count', _('Most popular')),\n+ ordering_choices += ('-comment_count', _('Most commented')),\n+\n+ filters['ordering'] = {\n+ 'label': _('Ordering'),\n+ 'choices': ordering_choices,\n+ 'default': '-created',\n+ }\n+\n response = super().list(request, args, kwargs)\n response.data['filters'] = filters\n return response\n", "issue": "user front end: make username in idea list bold\n**URL:** https://meinberlin-dev.liqd.net/projekte/brainstorming-2/\r\n**user:** any\r\n**expected behaviour:** \r\n**behaviour:** better distinguish username and date of creation/editing. e.g. by making the username bolt as we do in idea detail view\r\n**important screensize:**\r\n**device & browser:** \r\n**Comment/Question:** \r\n\r\n\r\n\r\nScreenshot?\r\n<img width=\"639\" alt=\"Bildschirmfoto 2021-12-16 um 12 14 35\" src=\"https://user-images.githubusercontent.com/35491681/146361740-cf6915cf-bef4-497d-83f5-6e8cf1154ddb.png\">\r\n\r\n\ntesting 5024: filter bar above list on smaller screens\n**URL:** https://meinberlin-dev.liqd.net/projekte/burgerhaushalt-spandau/?mode=list\r\n**user:** any\r\n**expected behaviour:**\r\n**behaviour:** on screens smaller than 1200: list/map switch, sorting and filter don't look the same as old list, although old list also doesn't look good between around 850 and 1100 \r\n**important screensize:**\r\n**device & browser:** \r\n**Comment/Question:** or should we change that when touching the filter again? not sure though when that will be so maybe now make it look good?\r\n\r\nScreenshot?\r\n\r\n<img width=\"439\" alt=\"Bildschirmfoto 2021-12-20 um 18 03 19\" src=\"https://user-images.githubusercontent.com/35491681/146957441-4e6c4f98-609e-4d85-a21b-a7d2b6964909.png\">\r\n\r\n\n", "before_files": [{"content": "from django.utils.translation import get_language\nfrom django.utils.translation import gettext_lazy as _\nfrom django_filters.rest_framework import DjangoFilterBackend\nfrom rest_framework import mixins\nfrom rest_framework import viewsets\nfrom rest_framework.filters import OrderingFilter\nfrom rest_framework.pagination import PageNumberPagination\n\nfrom adhocracy4.api.mixins import ModuleMixin\nfrom adhocracy4.api.permissions import ViewSetRulesPermission\nfrom adhocracy4.categories import get_category_icon_url\nfrom adhocracy4.categories import has_icons\nfrom adhocracy4.categories.models import Category\nfrom meinberlin.apps.contrib.filters import IdeaCategoryFilterBackend\nfrom meinberlin.apps.votes.api import VotingTokenInfoMixin\n\nfrom .models import Proposal\nfrom .serializers import ProposalSerializer\n\n\n# To be changed to a more general IdeaPagination, when using\n# pagination via rest api for more idea lists\nclass ProposalPagination(PageNumberPagination):\n page_size = 15\n\n def get_paginated_response(self, data):\n response = super(ProposalPagination, self).get_paginated_response(data)\n response.data['page_size'] = self.page_size\n response.data['page_count'] = self.page.paginator.num_pages\n return response\n\n\nclass LocaleInfoMixin:\n def list(self, request, *args, **kwargs):\n response = super().list(request, args, kwargs)\n response.data['locale'] = get_language()\n return response\n\n\nclass ProposalFilterInfoMixin(ModuleMixin):\n def list(self, request, *args, **kwargs):\n \"\"\"Add the filter information to the data of the Proposal API.\n\n Needs to be used with rest_framework.mixins.ListModelMixin\n \"\"\"\n filters = {}\n\n ordering_choices = [('-created', _('Most recent')), ]\n if self.module.has_feature('rate', Proposal):\n ordering_choices += ('-positive_rating_count', _('Most popular')),\n ordering_choices += ('-comment_count', _('Most commented')),\n\n filters['ordering'] = {\n 'label': _('Ordering'),\n 'choices': ordering_choices,\n 'default': '-created',\n }\n\n categories = Category.objects.filter(\n module=self.module\n )\n if categories:\n category_choices = [('', _('All')), ]\n if has_icons(self.module):\n category_icons = []\n for category in categories:\n category_choices += (str(category.pk), category.name),\n if has_icons(self.module):\n icon_name = getattr(category, 'icon', None)\n icon_url = get_category_icon_url(icon_name)\n category_icons += (str(category.pk), icon_url),\n\n filters['category'] = {\n 'label': _('Category'),\n 'choices': category_choices,\n }\n if has_icons(self.module):\n filters['category']['icons'] = category_icons\n\n filters['is_archived'] = {\n 'label': _('Archived'),\n 'choices': [\n ('', _('All')),\n ('false', _('No')),\n ('true', _('Yes')),\n ],\n 'default': 'false',\n }\n\n response = super().list(request, args, kwargs)\n response.data['filters'] = filters\n return response\n\n\nclass ProposalViewSet(ProposalFilterInfoMixin,\n LocaleInfoMixin,\n VotingTokenInfoMixin,\n mixins.ListModelMixin,\n viewsets.GenericViewSet,\n ):\n\n pagination_class = ProposalPagination\n serializer_class = ProposalSerializer\n permission_classes = (ViewSetRulesPermission,)\n filter_backends = (DjangoFilterBackend,\n OrderingFilter,\n IdeaCategoryFilterBackend,)\n filter_fields = ('is_archived', 'category',)\n ordering_fields = ('created',\n 'comment_count',\n 'positive_rating_count',)\n\n def get_permission_object(self):\n return self.module\n\n def get_queryset(self):\n proposals = Proposal.objects\\\n .filter(module=self.module) \\\n .annotate_comment_count() \\\n .annotate_positive_rating_count() \\\n .annotate_negative_rating_count() \\\n .order_by('-created')\n return proposals\n", "path": "meinberlin/apps/budgeting/api.py"}]} | 2,096 | 320 |
gh_patches_debug_4035 | rasdani/github-patches | git_diff | ivy-llc__ivy-28068 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Fix Frontend Failing Test: torch - creation.paddle.eye
To-do List: https://github.com/unifyai/ivy/issues/27498
</issue>
<code>
[start of ivy/functional/frontends/paddle/creation.py]
1 # global
2 import ivy
3 from ivy.func_wrapper import with_unsupported_dtypes, with_supported_dtypes
4 import ivy.functional.frontends.paddle as paddle_frontend
5 from ivy.functional.frontends.paddle.func_wrapper import (
6 to_ivy_arrays_and_back,
7 )
8
9
10 @with_unsupported_dtypes({"2.6.0 and below": ("float16", "bfloat16")}, "paddle")
11 @to_ivy_arrays_and_back
12 def arange(start, end=None, step=1, dtype=None, name=None):
13 return ivy.arange(start, end, step=step, dtype=dtype)
14
15
16 @with_supported_dtypes(
17 {"2.6.0 and below": ("float16", "float32", "float64", "int32", "int64", "bool")},
18 "paddle",
19 )
20 @to_ivy_arrays_and_back
21 def assign(x, output=None):
22 if len(ivy.shape(x)) == 0:
23 x = ivy.reshape(ivy.Array(x), (1,))
24 if ivy.exists(output):
25 output = ivy.reshape(ivy.Array(output), (1,))
26 else:
27 x = ivy.reshape(x, ivy.shape(x))
28 ret = ivy.copy_array(x, to_ivy_array=False, out=output)
29 return ret
30
31
32 @with_unsupported_dtypes(
33 {"2.6.0 and below": ("bfloat16", "uint16", "uint32", "uint64")}, "paddle"
34 )
35 @to_ivy_arrays_and_back
36 def clone(x):
37 return ivy.copy_array(x)
38
39
40 @with_supported_dtypes(
41 {"2.6.0 and below": ("float32", "float64")},
42 "paddle",
43 )
44 @to_ivy_arrays_and_back
45 def complex(real, imag, name=None):
46 assert real.dtype == imag.dtype, (
47 "(InvalidArgument) The type of data we are trying to retrieve does not match"
48 " the type of data currently contained in the container."
49 )
50 complex_dtype = "complex64" if real.dtype == "float32" else "complex128"
51 imag_cmplx = ivy.astype(imag, complex_dtype) * 1j
52 complex_array = real + imag_cmplx
53 return complex_array
54
55
56 @with_supported_dtypes(
57 {"2.6.0 and below": ("float32", "float64", "int32", "int64")}, "paddle"
58 )
59 @to_ivy_arrays_and_back
60 def diag(x, offset=0, padding_value=0, name=None):
61 if len(x.shape) == 1:
62 padding_value = ivy.astype(padding_value, ivy.dtype(x))
63 ret = ivy.diagflat(x, offset=offset, padding_value=padding_value)
64 if len(ret.shape) != 2:
65 ret = ivy.reshape(ret, (1, 1))
66 else:
67 ret = ivy.diag(x, k=offset)
68 return ret
69
70
71 @with_supported_dtypes(
72 {"2.6.0 and below": ("float32", "float64", "int32", "int64")}, "paddle"
73 )
74 @to_ivy_arrays_and_back
75 def diagflat(x, offset=0, name=None):
76 arr = ivy.diagflat(x, offset=offset)
77 return arr
78
79
80 @to_ivy_arrays_and_back
81 def empty(shape, dtype=None):
82 return ivy.empty(shape=shape, dtype=dtype)
83
84
85 @to_ivy_arrays_and_back
86 def empty_like(x, dtype=None, name=None):
87 return ivy.empty_like(x, dtype=dtype)
88
89
90 @to_ivy_arrays_and_back
91 def eye(num_rows, num_columns=None, dtype=None, name=None):
92 return ivy.eye(num_rows, num_columns, dtype=dtype)
93
94
95 @to_ivy_arrays_and_back
96 def full(shape, fill_value, /, *, dtype=None, name=None):
97 dtype = "float32" if dtype is None else dtype
98 return ivy.full(shape, fill_value, dtype=dtype)
99
100
101 @to_ivy_arrays_and_back
102 def full_like(x, fill_value, /, *, dtype=None, name=None):
103 dtype = x.dtype if dtype is None else dtype
104 return ivy.full_like(x, fill_value, dtype=dtype)
105
106
107 @with_supported_dtypes(
108 {"2.6.0 and below": ("float32", "float64", "int32", "int64")}, "paddle"
109 )
110 @to_ivy_arrays_and_back
111 def linspace(start, stop, num, dtype=None, name=None):
112 return ivy.linspace(start, stop, num=num, dtype=dtype)
113
114
115 @with_supported_dtypes(
116 {"2.6.0 and below": ("float32", "float64", "int32", "int64")}, "paddle"
117 )
118 @to_ivy_arrays_and_back
119 def logspace(start, stop, num, base=10.0, dtype=None, name=None):
120 return ivy.logspace(start, stop, num=num, base=base, dtype=dtype)
121
122
123 @with_supported_dtypes(
124 {"2.6.0 and below": ("float32", "float64", "int32", "int64")}, "paddle"
125 )
126 @to_ivy_arrays_and_back
127 def meshgrid(*args, **kwargs):
128 return ivy.meshgrid(*args, indexing="ij")
129
130
131 @with_unsupported_dtypes({"2.6.0 and below": "int8"}, "paddle")
132 @to_ivy_arrays_and_back
133 def ones(shape, /, *, dtype=None, name=None):
134 dtype = "float32" if dtype is None else dtype
135 return ivy.ones(shape, dtype=dtype)
136
137
138 @with_unsupported_dtypes(
139 {"2.6.0 and below": ("uint8", "int8", "complex64", "complex128")}, "paddle"
140 )
141 @to_ivy_arrays_and_back
142 def ones_like(x, /, *, dtype=None, name=None):
143 dtype = x.dtype if dtype is None else dtype
144 return ivy.ones_like(x, dtype=dtype)
145
146
147 @to_ivy_arrays_and_back
148 def to_tensor(data, /, *, dtype=None, place=None, stop_gradient=True):
149 array = ivy.array(data, dtype=dtype, device=place)
150 return paddle_frontend.Tensor(array, dtype=dtype, place=place)
151
152
153 @with_unsupported_dtypes(
154 {
155 "2.6.0 and below": (
156 "uint8",
157 "int8",
158 "int16",
159 "float16",
160 "complex64",
161 "complex128",
162 "bool",
163 )
164 },
165 "paddle",
166 )
167 @to_ivy_arrays_and_back
168 def tril(x, diagonal=0, name=None):
169 return ivy.tril(x, k=diagonal)
170
171
172 @with_supported_dtypes({"2.6.0 and below": ("int32", "int64")}, "paddle")
173 @to_ivy_arrays_and_back
174 def tril_indices(row, col, offset=0, dtype="int64"):
175 arr = ivy.tril_indices(row, col, offset)
176 arr = ivy.astype(arr, dtype)
177 return arr
178
179
180 @with_unsupported_dtypes(
181 {
182 "2.6.0 and below": (
183 "uint8",
184 "int8",
185 "int16",
186 "float16",
187 "complex64",
188 "complex128",
189 "bool",
190 )
191 },
192 "paddle",
193 )
194 @to_ivy_arrays_and_back
195 def triu(x, diagonal=0, name=None):
196 return ivy.triu(x, k=diagonal)
197
198
199 @with_supported_dtypes({"2.6.0 and below": ("int32", "int64")}, "paddle")
200 @to_ivy_arrays_and_back
201 def triu_indices(row, col=None, offset=0, dtype="int64"):
202 arr = ivy.triu_indices(row, col, offset)
203 if not ivy.to_scalar(ivy.shape(arr[0], as_array=True)):
204 return arr
205 arr = ivy.astype(arr, dtype)
206 return arr
207
208
209 @with_unsupported_dtypes({"2.6.0 and below": "int8"}, "paddle")
210 @to_ivy_arrays_and_back
211 def zeros(shape, /, *, dtype=None, name=None):
212 dtype = "float32" if dtype is None else dtype
213 return ivy.zeros(shape, dtype=dtype)
214
215
216 @with_unsupported_dtypes(
217 {"2.6.0 and below": ("uint8", "int8", "complex64", "complex128")}, "paddle"
218 )
219 @to_ivy_arrays_and_back
220 def zeros_like(x, /, *, dtype=None, name=None):
221 dtype = x.dtype if dtype is None else dtype
222 return ivy.zeros_like(x, dtype=dtype)
223
[end of ivy/functional/frontends/paddle/creation.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/ivy/functional/frontends/paddle/creation.py b/ivy/functional/frontends/paddle/creation.py
--- a/ivy/functional/frontends/paddle/creation.py
+++ b/ivy/functional/frontends/paddle/creation.py
@@ -87,6 +87,9 @@
return ivy.empty_like(x, dtype=dtype)
+@with_supported_dtypes(
+ {"2.6.0 and below": ("float16", "float32", "float64", "int32", "int64")}, "paddle"
+)
@to_ivy_arrays_and_back
def eye(num_rows, num_columns=None, dtype=None, name=None):
return ivy.eye(num_rows, num_columns, dtype=dtype)
| {"golden_diff": "diff --git a/ivy/functional/frontends/paddle/creation.py b/ivy/functional/frontends/paddle/creation.py\n--- a/ivy/functional/frontends/paddle/creation.py\n+++ b/ivy/functional/frontends/paddle/creation.py\n@@ -87,6 +87,9 @@\n return ivy.empty_like(x, dtype=dtype)\n \n \n+@with_supported_dtypes(\n+ {\"2.6.0 and below\": (\"float16\", \"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n+)\n @to_ivy_arrays_and_back\n def eye(num_rows, num_columns=None, dtype=None, name=None):\n return ivy.eye(num_rows, num_columns, dtype=dtype)\n", "issue": "Fix Frontend Failing Test: torch - creation.paddle.eye\nTo-do List: https://github.com/unifyai/ivy/issues/27498\n", "before_files": [{"content": "# global\nimport ivy\nfrom ivy.func_wrapper import with_unsupported_dtypes, with_supported_dtypes\nimport ivy.functional.frontends.paddle as paddle_frontend\nfrom ivy.functional.frontends.paddle.func_wrapper import (\n to_ivy_arrays_and_back,\n)\n\n\n@with_unsupported_dtypes({\"2.6.0 and below\": (\"float16\", \"bfloat16\")}, \"paddle\")\n@to_ivy_arrays_and_back\ndef arange(start, end=None, step=1, dtype=None, name=None):\n return ivy.arange(start, end, step=step, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float16\", \"float32\", \"float64\", \"int32\", \"int64\", \"bool\")},\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef assign(x, output=None):\n if len(ivy.shape(x)) == 0:\n x = ivy.reshape(ivy.Array(x), (1,))\n if ivy.exists(output):\n output = ivy.reshape(ivy.Array(output), (1,))\n else:\n x = ivy.reshape(x, ivy.shape(x))\n ret = ivy.copy_array(x, to_ivy_array=False, out=output)\n return ret\n\n\n@with_unsupported_dtypes(\n {\"2.6.0 and below\": (\"bfloat16\", \"uint16\", \"uint32\", \"uint64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef clone(x):\n return ivy.copy_array(x)\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float32\", \"float64\")},\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef complex(real, imag, name=None):\n assert real.dtype == imag.dtype, (\n \"(InvalidArgument) The type of data we are trying to retrieve does not match\"\n \" the type of data currently contained in the container.\"\n )\n complex_dtype = \"complex64\" if real.dtype == \"float32\" else \"complex128\"\n imag_cmplx = ivy.astype(imag, complex_dtype) * 1j\n complex_array = real + imag_cmplx\n return complex_array\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef diag(x, offset=0, padding_value=0, name=None):\n if len(x.shape) == 1:\n padding_value = ivy.astype(padding_value, ivy.dtype(x))\n ret = ivy.diagflat(x, offset=offset, padding_value=padding_value)\n if len(ret.shape) != 2:\n ret = ivy.reshape(ret, (1, 1))\n else:\n ret = ivy.diag(x, k=offset)\n return ret\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef diagflat(x, offset=0, name=None):\n arr = ivy.diagflat(x, offset=offset)\n return arr\n\n\n@to_ivy_arrays_and_back\ndef empty(shape, dtype=None):\n return ivy.empty(shape=shape, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef empty_like(x, dtype=None, name=None):\n return ivy.empty_like(x, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef eye(num_rows, num_columns=None, dtype=None, name=None):\n return ivy.eye(num_rows, num_columns, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef full(shape, fill_value, /, *, dtype=None, name=None):\n dtype = \"float32\" if dtype is None else dtype\n return ivy.full(shape, fill_value, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef full_like(x, fill_value, /, *, dtype=None, name=None):\n dtype = x.dtype if dtype is None else dtype\n return ivy.full_like(x, fill_value, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef linspace(start, stop, num, dtype=None, name=None):\n return ivy.linspace(start, stop, num=num, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef logspace(start, stop, num, base=10.0, dtype=None, name=None):\n return ivy.logspace(start, stop, num=num, base=base, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.6.0 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef meshgrid(*args, **kwargs):\n return ivy.meshgrid(*args, indexing=\"ij\")\n\n\n@with_unsupported_dtypes({\"2.6.0 and below\": \"int8\"}, \"paddle\")\n@to_ivy_arrays_and_back\ndef ones(shape, /, *, dtype=None, name=None):\n dtype = \"float32\" if dtype is None else dtype\n return ivy.ones(shape, dtype=dtype)\n\n\n@with_unsupported_dtypes(\n {\"2.6.0 and below\": (\"uint8\", \"int8\", \"complex64\", \"complex128\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef ones_like(x, /, *, dtype=None, name=None):\n dtype = x.dtype if dtype is None else dtype\n return ivy.ones_like(x, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef to_tensor(data, /, *, dtype=None, place=None, stop_gradient=True):\n array = ivy.array(data, dtype=dtype, device=place)\n return paddle_frontend.Tensor(array, dtype=dtype, place=place)\n\n\n@with_unsupported_dtypes(\n {\n \"2.6.0 and below\": (\n \"uint8\",\n \"int8\",\n \"int16\",\n \"float16\",\n \"complex64\",\n \"complex128\",\n \"bool\",\n )\n },\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef tril(x, diagonal=0, name=None):\n return ivy.tril(x, k=diagonal)\n\n\n@with_supported_dtypes({\"2.6.0 and below\": (\"int32\", \"int64\")}, \"paddle\")\n@to_ivy_arrays_and_back\ndef tril_indices(row, col, offset=0, dtype=\"int64\"):\n arr = ivy.tril_indices(row, col, offset)\n arr = ivy.astype(arr, dtype)\n return arr\n\n\n@with_unsupported_dtypes(\n {\n \"2.6.0 and below\": (\n \"uint8\",\n \"int8\",\n \"int16\",\n \"float16\",\n \"complex64\",\n \"complex128\",\n \"bool\",\n )\n },\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef triu(x, diagonal=0, name=None):\n return ivy.triu(x, k=diagonal)\n\n\n@with_supported_dtypes({\"2.6.0 and below\": (\"int32\", \"int64\")}, \"paddle\")\n@to_ivy_arrays_and_back\ndef triu_indices(row, col=None, offset=0, dtype=\"int64\"):\n arr = ivy.triu_indices(row, col, offset)\n if not ivy.to_scalar(ivy.shape(arr[0], as_array=True)):\n return arr\n arr = ivy.astype(arr, dtype)\n return arr\n\n\n@with_unsupported_dtypes({\"2.6.0 and below\": \"int8\"}, \"paddle\")\n@to_ivy_arrays_and_back\ndef zeros(shape, /, *, dtype=None, name=None):\n dtype = \"float32\" if dtype is None else dtype\n return ivy.zeros(shape, dtype=dtype)\n\n\n@with_unsupported_dtypes(\n {\"2.6.0 and below\": (\"uint8\", \"int8\", \"complex64\", \"complex128\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef zeros_like(x, /, *, dtype=None, name=None):\n dtype = x.dtype if dtype is None else dtype\n return ivy.zeros_like(x, dtype=dtype)\n", "path": "ivy/functional/frontends/paddle/creation.py"}]} | 3,128 | 169 |
gh_patches_debug_34764 | rasdani/github-patches | git_diff | PennyLaneAI__pennylane-2395 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
[BUG] `qml.specs`: `max_expansion` keyword argument is not doing anything (what should it do?)
### Expected behavior
I'm not sure what `max_expansion` should be doing. Currently, it looks like it isn't doing anything. Maybe just the docstring
> - max_expansion (int) – The number of times the internal circuit should be expanded when calculating the specification. Defaults to qnode.max_expansion.
can be clarified?
### Actual behavior
Consider this circuit:
```
@qml.qnode(dev)
def circuit():
qml.templates.StronglyEntanglingLayers(
np.random.random((3, 2, 3)),
wires=range(2)
)
return qml.probs(wires=(0,1))
```
Then,
```
print(qml.specs(circuit)() == qml.specs(circuit, max_expansion=7)()) # output: True
```
no matter what the value `max_expansion` is assigned to.
### Additional information
Specifying `expansion_strategy = "device"` below updates the `'depth'` key:
```
@qml.qnode(dev, expansion_strategy="device")
def circuit():
qml.templates.StronglyEntanglingLayers(
np.random.random((3, 2, 3)),
wires=range(2)
)
return qml.probs(wires=(0,1))
print(qml.specs(circuit)()) # 'depth' key is changed from 1 (without expansion_strategy) to 9
```
### Source code
```shell
import pennylane as qml
from pennylane import numpy as np
dev = qml.device('default.qubit', wires=2)
def layer():
qml.templates.StronglyEntanglingLayers(
np.random.random((3, 2, 3)),
wires=range(2)
)
@qml.qnode(dev, expansion_strategy="device")
def circuit_exp_strat():
layer()
return qml.probs(wires=(0,1))
@qml.qnode(dev)
def circuit():
layer()
return qml.probs(wires=(0,1))
print(qml.specs(circuit_exp_strat)())
print(qml.specs(circuit)())
print(qml.specs(circuit, max_expansion = 7)())
```
### Tracebacks
```shell
N/A
```
### System information
```shell
Name: PennyLane
Version: 0.22.1
Summary: PennyLane is a Python quantum machine learning library by Xanadu Inc.
Home-page: https://github.com/XanaduAI/pennylane
Author:
Author-email:
License: Apache License 2.0
Location: /opt/anaconda3/lib/python3.9/site-packages
Requires: toml, appdirs, retworkx, pennylane-lightning, numpy, autograd, semantic-version, networkx, scipy, autoray, cachetools
Required-by: PennyLane-Lightning
Platform info: macOS-10.16-x86_64-i386-64bit
Python version: 3.9.7
Numpy version: 1.20.3
Scipy version: 1.7.1
Installed devices:
- default.gaussian (PennyLane-0.22.1)
- default.mixed (PennyLane-0.22.1)
- default.qubit (PennyLane-0.22.1)
- default.qubit.autograd (PennyLane-0.22.1)
- default.qubit.jax (PennyLane-0.22.1)
- default.qubit.tf (PennyLane-0.22.1)
- default.qubit.torch (PennyLane-0.22.1)
- lightning.qubit (PennyLane-Lightning-0.22.1)
```
### Existing GitHub issues
- [X] I have searched existing GitHub issues to make sure the issue does not already exist.
</issue>
<code>
[start of pennylane/transforms/specs.py]
1 # Copyright 2018-2021 Xanadu Quantum Technologies Inc.
2
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6
7 # http://www.apache.org/licenses/LICENSE-2.0
8
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14 """Code for resource estimation"""
15 import inspect
16
17 import pennylane as qml
18
19
20 def _get_absolute_import_path(fn):
21 return f"{inspect.getmodule(fn).__name__}.{fn.__name__}"
22
23
24 def specs(qnode, max_expansion=None):
25 """Resource information about a quantum circuit.
26
27 This transform converts a QNode into a callable that provides resource information
28 about the circuit.
29
30 Args:
31 qnode (.QNode): the QNode to calculate the specifications for
32
33 Keyword Args:
34 max_expansion (int): The number of times the internal circuit should be expanded when
35 calculating the specification. Defaults to ``qnode.max_expansion``.
36
37 Returns:
38 A function that has the same argument signature as ``qnode``. This function
39 returns a dictionary of information about qnode structure.
40
41 **Example**
42
43 .. code-block:: python3
44
45 x = np.array([0.1, 0.2])
46
47 dev = qml.device('default.qubit', wires=2)
48 @qml.qnode(dev, diff_method="parameter-shift", shift=np.pi / 4)
49 def circuit(x, add_ry=True):
50 qml.RX(x[0], wires=0)
51 qml.CNOT(wires=(0,1))
52 if add_ry:
53 qml.RY(x[1], wires=1)
54 return qml.probs(wires=(0,1))
55
56 >>> qml.specs(circuit)(x, add_ry=False)
57 {'gate_sizes': defaultdict(int, {1: 1, 2: 1}),
58 'gate_types': defaultdict(int, {'RX': 1, 'CNOT': 1}),
59 'num_operations': 2,
60 'num_observables': 1,
61 'num_diagonalizing_gates': 0,
62 'num_used_wires': 2,
63 'depth': 2,
64 'num_trainable_params': 1,
65 'num_device_wires': 2,
66 'device_name': 'default.qubit',
67 'diff_method': 'parameter-shift',
68 'expansion_strategy': 'gradient',
69 'gradient_options': {'shift': 0.7853981633974483},
70 'interface': 'autograd',
71 'gradient_fn': 'pennylane.gradients.parameter_shift.param_shift',
72 'num_gradient_executions': 2}
73
74 """
75
76 def specs_qnode(*args, **kwargs):
77 """Returns information on the structure and makeup of provided QNode.
78
79 Dictionary keys:
80 * ``"num_operations"``
81 * ``"num_observables"``
82 * ``"num_diagonalizing_gates"``
83 * ``"gate_sizes"``: dictionary mapping gate number of wires to number of occurances
84 * ``"gate_types"``: dictionary mapping gate types to number of occurances
85 * ``"num_used_wires"``: number of wires used by the circuit
86 * ``"num_device_wires"``: number of wires in device
87 * ``"depth"``: longest path in directed acyclic graph representation
88 * ``"dev_short_name"``: name of QNode device
89 * ``"diff_method"``
90
91 Potential Additional Information:
92 * ``"num_trainable_params"``: number of individual scalars that are trainable
93 * ``"num_parameter_shift_executions"``: number of times circuit will execute when
94 calculating the derivative
95
96 Returns:
97 dict[str, Union[defaultdict,int]]: dictionaries that contain QNode specifications
98 """
99 initial_max_expansion = qnode.max_expansion
100 qnode.max_expansion = initial_max_expansion if max_expansion is None else max_expansion
101
102 try:
103 qnode.construct(args, kwargs)
104 finally:
105 qnode.max_expansion = initial_max_expansion
106
107 info = qnode.qtape.specs.copy()
108
109 info["num_device_wires"] = qnode.device.num_wires
110 info["device_name"] = qnode.device.short_name
111 info["expansion_strategy"] = qnode.expansion_strategy
112 info["gradient_options"] = qnode.gradient_kwargs
113 info["interface"] = qnode.interface
114 info["diff_method"] = (
115 _get_absolute_import_path(qnode.diff_method)
116 if callable(qnode.diff_method)
117 else qnode.diff_method
118 )
119
120 if isinstance(qnode.gradient_fn, qml.gradients.gradient_transform):
121 info["gradient_fn"] = _get_absolute_import_path(qnode.gradient_fn)
122
123 try:
124 info["num_gradient_executions"] = len(qnode.gradient_fn(qnode.qtape)[0])
125 except Exception as e: # pylint: disable=broad-except
126 # In the case of a broad exception, we don't want the `qml.specs` transform
127 # to fail. Instead, we simply indicate that the number of gradient executions
128 # is not supported for the reason specified.
129 info["num_gradient_executions"] = f"NotSupported: {str(e)}"
130 else:
131 info["gradient_fn"] = qnode.gradient_fn
132
133 return info
134
135 return specs_qnode
136
[end of pennylane/transforms/specs.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pennylane/transforms/specs.py b/pennylane/transforms/specs.py
--- a/pennylane/transforms/specs.py
+++ b/pennylane/transforms/specs.py
@@ -21,7 +21,7 @@
return f"{inspect.getmodule(fn).__name__}.{fn.__name__}"
-def specs(qnode, max_expansion=None):
+def specs(qnode, max_expansion=None, expansion_strategy=None):
"""Resource information about a quantum circuit.
This transform converts a QNode into a callable that provides resource information
@@ -33,6 +33,15 @@
Keyword Args:
max_expansion (int): The number of times the internal circuit should be expanded when
calculating the specification. Defaults to ``qnode.max_expansion``.
+ expansion_strategy (str): The strategy to use when circuit expansions or decompositions
+ are required.
+
+ - ``gradient``: The QNode will attempt to decompose
+ the internal circuit such that all circuit operations are supported by the gradient
+ method.
+
+ - ``device``: The QNode will attempt to decompose the internal circuit
+ such that all circuit operations are natively supported by the device.
Returns:
A function that has the same argument signature as ``qnode``. This function
@@ -97,12 +106,15 @@
dict[str, Union[defaultdict,int]]: dictionaries that contain QNode specifications
"""
initial_max_expansion = qnode.max_expansion
- qnode.max_expansion = initial_max_expansion if max_expansion is None else max_expansion
+ initial_expansion_strategy = getattr(qnode, "expansion_strategy", None)
try:
+ qnode.max_expansion = initial_max_expansion if max_expansion is None else max_expansion
+ qnode.expansion_strategy = expansion_strategy or initial_expansion_strategy
qnode.construct(args, kwargs)
finally:
qnode.max_expansion = initial_max_expansion
+ qnode.expansion_strategy = initial_expansion_strategy
info = qnode.qtape.specs.copy()
| {"golden_diff": "diff --git a/pennylane/transforms/specs.py b/pennylane/transforms/specs.py\n--- a/pennylane/transforms/specs.py\n+++ b/pennylane/transforms/specs.py\n@@ -21,7 +21,7 @@\n return f\"{inspect.getmodule(fn).__name__}.{fn.__name__}\"\n \n \n-def specs(qnode, max_expansion=None):\n+def specs(qnode, max_expansion=None, expansion_strategy=None):\n \"\"\"Resource information about a quantum circuit.\n \n This transform converts a QNode into a callable that provides resource information\n@@ -33,6 +33,15 @@\n Keyword Args:\n max_expansion (int): The number of times the internal circuit should be expanded when\n calculating the specification. Defaults to ``qnode.max_expansion``.\n+ expansion_strategy (str): The strategy to use when circuit expansions or decompositions\n+ are required.\n+\n+ - ``gradient``: The QNode will attempt to decompose\n+ the internal circuit such that all circuit operations are supported by the gradient\n+ method.\n+\n+ - ``device``: The QNode will attempt to decompose the internal circuit\n+ such that all circuit operations are natively supported by the device.\n \n Returns:\n A function that has the same argument signature as ``qnode``. This function\n@@ -97,12 +106,15 @@\n dict[str, Union[defaultdict,int]]: dictionaries that contain QNode specifications\n \"\"\"\n initial_max_expansion = qnode.max_expansion\n- qnode.max_expansion = initial_max_expansion if max_expansion is None else max_expansion\n+ initial_expansion_strategy = getattr(qnode, \"expansion_strategy\", None)\n \n try:\n+ qnode.max_expansion = initial_max_expansion if max_expansion is None else max_expansion\n+ qnode.expansion_strategy = expansion_strategy or initial_expansion_strategy\n qnode.construct(args, kwargs)\n finally:\n qnode.max_expansion = initial_max_expansion\n+ qnode.expansion_strategy = initial_expansion_strategy\n \n info = qnode.qtape.specs.copy()\n", "issue": "[BUG] `qml.specs`: `max_expansion` keyword argument is not doing anything (what should it do?)\n### Expected behavior\n\nI'm not sure what `max_expansion` should be doing. Currently, it looks like it isn't doing anything. Maybe just the docstring\r\n\r\n> - max_expansion (int) \u2013 The number of times the internal circuit should be expanded when calculating the specification. Defaults to qnode.max_expansion.\r\n\r\ncan be clarified?\n\n### Actual behavior\n\nConsider this circuit:\r\n\r\n```\r\[email protected](dev)\r\ndef circuit():\r\n qml.templates.StronglyEntanglingLayers(\r\n np.random.random((3, 2, 3)),\r\n wires=range(2)\r\n )\r\n return qml.probs(wires=(0,1))\r\n```\r\n\r\nThen, \r\n\r\n```\r\nprint(qml.specs(circuit)() == qml.specs(circuit, max_expansion=7)()) # output: True\r\n```\r\n\r\nno matter what the value `max_expansion` is assigned to.\r\n\r\n\n\n### Additional information\n\nSpecifying `expansion_strategy = \"device\"` below updates the `'depth'` key:\r\n\r\n```\r\[email protected](dev, expansion_strategy=\"device\")\r\ndef circuit():\r\n qml.templates.StronglyEntanglingLayers(\r\n np.random.random((3, 2, 3)),\r\n wires=range(2)\r\n )\r\n return qml.probs(wires=(0,1))\r\n\r\nprint(qml.specs(circuit)()) # 'depth' key is changed from 1 (without expansion_strategy) to 9\r\n```\n\n### Source code\n\n```shell\nimport pennylane as qml\r\nfrom pennylane import numpy as np\r\n\r\ndev = qml.device('default.qubit', wires=2)\r\n\r\ndef layer():\r\n qml.templates.StronglyEntanglingLayers(\r\n np.random.random((3, 2, 3)),\r\n wires=range(2)\r\n )\r\n\r\[email protected](dev, expansion_strategy=\"device\")\r\ndef circuit_exp_strat():\r\n layer()\r\n return qml.probs(wires=(0,1))\r\n\r\[email protected](dev)\r\ndef circuit():\r\n layer()\r\n return qml.probs(wires=(0,1))\r\n\r\nprint(qml.specs(circuit_exp_strat)())\r\nprint(qml.specs(circuit)())\r\nprint(qml.specs(circuit, max_expansion = 7)())\n```\n\n\n### Tracebacks\n\n```shell\nN/A\n```\n\n\n### System information\n\n```shell\nName: PennyLane\r\nVersion: 0.22.1\r\nSummary: PennyLane is a Python quantum machine learning library by Xanadu Inc.\r\nHome-page: https://github.com/XanaduAI/pennylane\r\nAuthor: \r\nAuthor-email: \r\nLicense: Apache License 2.0\r\nLocation: /opt/anaconda3/lib/python3.9/site-packages\r\nRequires: toml, appdirs, retworkx, pennylane-lightning, numpy, autograd, semantic-version, networkx, scipy, autoray, cachetools\r\nRequired-by: PennyLane-Lightning\r\nPlatform info: macOS-10.16-x86_64-i386-64bit\r\nPython version: 3.9.7\r\nNumpy version: 1.20.3\r\nScipy version: 1.7.1\r\nInstalled devices:\r\n- default.gaussian (PennyLane-0.22.1)\r\n- default.mixed (PennyLane-0.22.1)\r\n- default.qubit (PennyLane-0.22.1)\r\n- default.qubit.autograd (PennyLane-0.22.1)\r\n- default.qubit.jax (PennyLane-0.22.1)\r\n- default.qubit.tf (PennyLane-0.22.1)\r\n- default.qubit.torch (PennyLane-0.22.1)\r\n- lightning.qubit (PennyLane-Lightning-0.22.1)\n```\n\n\n### Existing GitHub issues\n\n- [X] I have searched existing GitHub issues to make sure the issue does not already exist.\n", "before_files": [{"content": "# Copyright 2018-2021 Xanadu Quantum Technologies Inc.\n\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n\n# http://www.apache.org/licenses/LICENSE-2.0\n\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\"\"\"Code for resource estimation\"\"\"\nimport inspect\n\nimport pennylane as qml\n\n\ndef _get_absolute_import_path(fn):\n return f\"{inspect.getmodule(fn).__name__}.{fn.__name__}\"\n\n\ndef specs(qnode, max_expansion=None):\n \"\"\"Resource information about a quantum circuit.\n\n This transform converts a QNode into a callable that provides resource information\n about the circuit.\n\n Args:\n qnode (.QNode): the QNode to calculate the specifications for\n\n Keyword Args:\n max_expansion (int): The number of times the internal circuit should be expanded when\n calculating the specification. Defaults to ``qnode.max_expansion``.\n\n Returns:\n A function that has the same argument signature as ``qnode``. This function\n returns a dictionary of information about qnode structure.\n\n **Example**\n\n .. code-block:: python3\n\n x = np.array([0.1, 0.2])\n\n dev = qml.device('default.qubit', wires=2)\n @qml.qnode(dev, diff_method=\"parameter-shift\", shift=np.pi / 4)\n def circuit(x, add_ry=True):\n qml.RX(x[0], wires=0)\n qml.CNOT(wires=(0,1))\n if add_ry:\n qml.RY(x[1], wires=1)\n return qml.probs(wires=(0,1))\n\n >>> qml.specs(circuit)(x, add_ry=False)\n {'gate_sizes': defaultdict(int, {1: 1, 2: 1}),\n 'gate_types': defaultdict(int, {'RX': 1, 'CNOT': 1}),\n 'num_operations': 2,\n 'num_observables': 1,\n 'num_diagonalizing_gates': 0,\n 'num_used_wires': 2,\n 'depth': 2,\n 'num_trainable_params': 1,\n 'num_device_wires': 2,\n 'device_name': 'default.qubit',\n 'diff_method': 'parameter-shift',\n 'expansion_strategy': 'gradient',\n 'gradient_options': {'shift': 0.7853981633974483},\n 'interface': 'autograd',\n 'gradient_fn': 'pennylane.gradients.parameter_shift.param_shift',\n 'num_gradient_executions': 2}\n\n \"\"\"\n\n def specs_qnode(*args, **kwargs):\n \"\"\"Returns information on the structure and makeup of provided QNode.\n\n Dictionary keys:\n * ``\"num_operations\"``\n * ``\"num_observables\"``\n * ``\"num_diagonalizing_gates\"``\n * ``\"gate_sizes\"``: dictionary mapping gate number of wires to number of occurances\n * ``\"gate_types\"``: dictionary mapping gate types to number of occurances\n * ``\"num_used_wires\"``: number of wires used by the circuit\n * ``\"num_device_wires\"``: number of wires in device\n * ``\"depth\"``: longest path in directed acyclic graph representation\n * ``\"dev_short_name\"``: name of QNode device\n * ``\"diff_method\"``\n\n Potential Additional Information:\n * ``\"num_trainable_params\"``: number of individual scalars that are trainable\n * ``\"num_parameter_shift_executions\"``: number of times circuit will execute when\n calculating the derivative\n\n Returns:\n dict[str, Union[defaultdict,int]]: dictionaries that contain QNode specifications\n \"\"\"\n initial_max_expansion = qnode.max_expansion\n qnode.max_expansion = initial_max_expansion if max_expansion is None else max_expansion\n\n try:\n qnode.construct(args, kwargs)\n finally:\n qnode.max_expansion = initial_max_expansion\n\n info = qnode.qtape.specs.copy()\n\n info[\"num_device_wires\"] = qnode.device.num_wires\n info[\"device_name\"] = qnode.device.short_name\n info[\"expansion_strategy\"] = qnode.expansion_strategy\n info[\"gradient_options\"] = qnode.gradient_kwargs\n info[\"interface\"] = qnode.interface\n info[\"diff_method\"] = (\n _get_absolute_import_path(qnode.diff_method)\n if callable(qnode.diff_method)\n else qnode.diff_method\n )\n\n if isinstance(qnode.gradient_fn, qml.gradients.gradient_transform):\n info[\"gradient_fn\"] = _get_absolute_import_path(qnode.gradient_fn)\n\n try:\n info[\"num_gradient_executions\"] = len(qnode.gradient_fn(qnode.qtape)[0])\n except Exception as e: # pylint: disable=broad-except\n # In the case of a broad exception, we don't want the `qml.specs` transform\n # to fail. Instead, we simply indicate that the number of gradient executions\n # is not supported for the reason specified.\n info[\"num_gradient_executions\"] = f\"NotSupported: {str(e)}\"\n else:\n info[\"gradient_fn\"] = qnode.gradient_fn\n\n return info\n\n return specs_qnode\n", "path": "pennylane/transforms/specs.py"}]} | 2,986 | 474 |
gh_patches_debug_3967 | rasdani/github-patches | git_diff | tiangolo__fastapi-1524 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Pydantic __root__ model - incorrect handling
### Describe the bug
https://pydantic-docs.helpmanual.io/usage/models/#custom-root-types
Pydantic allows to create models with only `__root__` field. In such scenario the model behaves as transparent wrapper for this single type.
When such model is used in response (request also?) fastapi does not treat it correctly and renders it as object with `__root__` field.
Object is treated correctly by pydantic itself.
### To Reproduce
```
from typing import List
from fastapi import FastAPI
from pydantic.main import BaseModel
app = FastAPI()
class RootTestClass(BaseModel):
__root__: List[str]
@app.get("/")
async def root():
response = RootTestClass(__root__=['a', 'b', 'c'])
print(response.json()) # ["a", "b", "c"] so it's OK
print(RootTestClass.schema()) # {'title': 'RootTestClass', 'type': 'array', 'items': {'type': 'string'}} this is also OK
return response # Wrong value in http response
```
### Expected behavior
The response should be:
```
["a", "b", "c"]
```
but at the moment is:
```
{"__root__":["a","b","c"]}
```
### Screenshots
N/A
### Environment
- OS: Linux
- FastAPI Version: 0.47.1
- Python version: Python 3.7.5
### Additional context
N/A
</issue>
<code>
[start of fastapi/encoders.py]
1 from enum import Enum
2 from pathlib import PurePath
3 from types import GeneratorType
4 from typing import Any, Callable, Dict, List, Set, Tuple, Union
5
6 from fastapi.logger import logger
7 from fastapi.utils import PYDANTIC_1
8 from pydantic import BaseModel
9 from pydantic.json import ENCODERS_BY_TYPE
10
11 SetIntStr = Set[Union[int, str]]
12 DictIntStrAny = Dict[Union[int, str], Any]
13
14
15 def generate_encoders_by_class_tuples(
16 type_encoder_map: Dict[Any, Callable]
17 ) -> Dict[Callable, Tuple]:
18 encoders_by_classes: Dict[Callable, List] = {}
19 for type_, encoder in type_encoder_map.items():
20 encoders_by_classes.setdefault(encoder, []).append(type_)
21 encoders_by_class_tuples: Dict[Callable, Tuple] = {}
22 for encoder, classes in encoders_by_classes.items():
23 encoders_by_class_tuples[encoder] = tuple(classes)
24 return encoders_by_class_tuples
25
26
27 encoders_by_class_tuples = generate_encoders_by_class_tuples(ENCODERS_BY_TYPE)
28
29
30 def jsonable_encoder(
31 obj: Any,
32 include: Union[SetIntStr, DictIntStrAny] = None,
33 exclude: Union[SetIntStr, DictIntStrAny] = set(),
34 by_alias: bool = True,
35 skip_defaults: bool = None,
36 exclude_unset: bool = False,
37 exclude_defaults: bool = False,
38 exclude_none: bool = False,
39 custom_encoder: dict = {},
40 sqlalchemy_safe: bool = True,
41 ) -> Any:
42 if skip_defaults is not None:
43 logger.warning( # pragma: nocover
44 "skip_defaults in jsonable_encoder has been deprecated in favor of "
45 "exclude_unset to keep in line with Pydantic v1, support for it will be "
46 "removed soon."
47 )
48 if include is not None and not isinstance(include, set):
49 include = set(include)
50 if exclude is not None and not isinstance(exclude, set):
51 exclude = set(exclude)
52 if isinstance(obj, BaseModel):
53 encoder = getattr(obj.Config, "json_encoders", {})
54 if custom_encoder:
55 encoder.update(custom_encoder)
56 if PYDANTIC_1:
57 obj_dict = obj.dict(
58 include=include,
59 exclude=exclude,
60 by_alias=by_alias,
61 exclude_unset=bool(exclude_unset or skip_defaults),
62 exclude_none=exclude_none,
63 exclude_defaults=exclude_defaults,
64 )
65 else: # pragma: nocover
66 if exclude_defaults:
67 raise ValueError("Cannot use exclude_defaults")
68 obj_dict = obj.dict(
69 include=include,
70 exclude=exclude,
71 by_alias=by_alias,
72 skip_defaults=bool(exclude_unset or skip_defaults),
73 )
74 return jsonable_encoder(
75 obj_dict,
76 exclude_none=exclude_none,
77 exclude_defaults=exclude_defaults,
78 custom_encoder=encoder,
79 sqlalchemy_safe=sqlalchemy_safe,
80 )
81 if isinstance(obj, Enum):
82 return obj.value
83 if isinstance(obj, PurePath):
84 return str(obj)
85 if isinstance(obj, (str, int, float, type(None))):
86 return obj
87 if isinstance(obj, dict):
88 encoded_dict = {}
89 for key, value in obj.items():
90 if (
91 (
92 not sqlalchemy_safe
93 or (not isinstance(key, str))
94 or (not key.startswith("_sa"))
95 )
96 and (value is not None or not exclude_none)
97 and ((include and key in include) or key not in exclude)
98 ):
99 encoded_key = jsonable_encoder(
100 key,
101 by_alias=by_alias,
102 exclude_unset=exclude_unset,
103 exclude_none=exclude_none,
104 custom_encoder=custom_encoder,
105 sqlalchemy_safe=sqlalchemy_safe,
106 )
107 encoded_value = jsonable_encoder(
108 value,
109 by_alias=by_alias,
110 exclude_unset=exclude_unset,
111 exclude_none=exclude_none,
112 custom_encoder=custom_encoder,
113 sqlalchemy_safe=sqlalchemy_safe,
114 )
115 encoded_dict[encoded_key] = encoded_value
116 return encoded_dict
117 if isinstance(obj, (list, set, frozenset, GeneratorType, tuple)):
118 encoded_list = []
119 for item in obj:
120 encoded_list.append(
121 jsonable_encoder(
122 item,
123 include=include,
124 exclude=exclude,
125 by_alias=by_alias,
126 exclude_unset=exclude_unset,
127 exclude_defaults=exclude_defaults,
128 exclude_none=exclude_none,
129 custom_encoder=custom_encoder,
130 sqlalchemy_safe=sqlalchemy_safe,
131 )
132 )
133 return encoded_list
134
135 if custom_encoder:
136 if type(obj) in custom_encoder:
137 return custom_encoder[type(obj)](obj)
138 else:
139 for encoder_type, encoder in custom_encoder.items():
140 if isinstance(obj, encoder_type):
141 return encoder(obj)
142
143 if type(obj) in ENCODERS_BY_TYPE:
144 return ENCODERS_BY_TYPE[type(obj)](obj)
145 for encoder, classes_tuple in encoders_by_class_tuples.items():
146 if isinstance(obj, classes_tuple):
147 return encoder(obj)
148
149 errors: List[Exception] = []
150 try:
151 data = dict(obj)
152 except Exception as e:
153 errors.append(e)
154 try:
155 data = vars(obj)
156 except Exception as e:
157 errors.append(e)
158 raise ValueError(errors)
159 return jsonable_encoder(
160 data,
161 by_alias=by_alias,
162 exclude_unset=exclude_unset,
163 exclude_defaults=exclude_defaults,
164 exclude_none=exclude_none,
165 custom_encoder=custom_encoder,
166 sqlalchemy_safe=sqlalchemy_safe,
167 )
168
[end of fastapi/encoders.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/fastapi/encoders.py b/fastapi/encoders.py
--- a/fastapi/encoders.py
+++ b/fastapi/encoders.py
@@ -71,6 +71,8 @@
by_alias=by_alias,
skip_defaults=bool(exclude_unset or skip_defaults),
)
+ if "__root__" in obj_dict:
+ obj_dict = obj_dict["__root__"]
return jsonable_encoder(
obj_dict,
exclude_none=exclude_none,
| {"golden_diff": "diff --git a/fastapi/encoders.py b/fastapi/encoders.py\n--- a/fastapi/encoders.py\n+++ b/fastapi/encoders.py\n@@ -71,6 +71,8 @@\n by_alias=by_alias,\n skip_defaults=bool(exclude_unset or skip_defaults),\n )\n+ if \"__root__\" in obj_dict:\n+ obj_dict = obj_dict[\"__root__\"]\n return jsonable_encoder(\n obj_dict,\n exclude_none=exclude_none,\n", "issue": "Pydantic __root__ model - incorrect handling\n### Describe the bug\r\n\r\nhttps://pydantic-docs.helpmanual.io/usage/models/#custom-root-types\r\nPydantic allows to create models with only `__root__` field. In such scenario the model behaves as transparent wrapper for this single type.\r\n\r\nWhen such model is used in response (request also?) fastapi does not treat it correctly and renders it as object with `__root__` field.\r\n\r\nObject is treated correctly by pydantic itself.\r\n\r\n### To Reproduce\r\n\r\n```\r\nfrom typing import List\r\nfrom fastapi import FastAPI\r\nfrom pydantic.main import BaseModel\r\n\r\napp = FastAPI()\r\n\r\n\r\nclass RootTestClass(BaseModel):\r\n __root__: List[str]\r\n\r\n\r\[email protected](\"/\")\r\nasync def root():\r\n response = RootTestClass(__root__=['a', 'b', 'c'])\r\n print(response.json()) # [\"a\", \"b\", \"c\"] so it's OK\r\n print(RootTestClass.schema()) # {'title': 'RootTestClass', 'type': 'array', 'items': {'type': 'string'}} this is also OK\r\n return response # Wrong value in http response\r\n```\r\n\r\n### Expected behavior\r\n\r\nThe response should be:\r\n```\r\n[\"a\", \"b\", \"c\"]\r\n```\r\n\r\nbut at the moment is:\r\n```\r\n{\"__root__\":[\"a\",\"b\",\"c\"]}\r\n```\r\n\r\n### Screenshots\r\n\r\nN/A\r\n\r\n### Environment\r\n\r\n- OS: Linux\r\n- FastAPI Version: 0.47.1\r\n- Python version: Python 3.7.5\r\n\r\n### Additional context\r\n\r\nN/A\r\n\n", "before_files": [{"content": "from enum import Enum\nfrom pathlib import PurePath\nfrom types import GeneratorType\nfrom typing import Any, Callable, Dict, List, Set, Tuple, Union\n\nfrom fastapi.logger import logger\nfrom fastapi.utils import PYDANTIC_1\nfrom pydantic import BaseModel\nfrom pydantic.json import ENCODERS_BY_TYPE\n\nSetIntStr = Set[Union[int, str]]\nDictIntStrAny = Dict[Union[int, str], Any]\n\n\ndef generate_encoders_by_class_tuples(\n type_encoder_map: Dict[Any, Callable]\n) -> Dict[Callable, Tuple]:\n encoders_by_classes: Dict[Callable, List] = {}\n for type_, encoder in type_encoder_map.items():\n encoders_by_classes.setdefault(encoder, []).append(type_)\n encoders_by_class_tuples: Dict[Callable, Tuple] = {}\n for encoder, classes in encoders_by_classes.items():\n encoders_by_class_tuples[encoder] = tuple(classes)\n return encoders_by_class_tuples\n\n\nencoders_by_class_tuples = generate_encoders_by_class_tuples(ENCODERS_BY_TYPE)\n\n\ndef jsonable_encoder(\n obj: Any,\n include: Union[SetIntStr, DictIntStrAny] = None,\n exclude: Union[SetIntStr, DictIntStrAny] = set(),\n by_alias: bool = True,\n skip_defaults: bool = None,\n exclude_unset: bool = False,\n exclude_defaults: bool = False,\n exclude_none: bool = False,\n custom_encoder: dict = {},\n sqlalchemy_safe: bool = True,\n) -> Any:\n if skip_defaults is not None:\n logger.warning( # pragma: nocover\n \"skip_defaults in jsonable_encoder has been deprecated in favor of \"\n \"exclude_unset to keep in line with Pydantic v1, support for it will be \"\n \"removed soon.\"\n )\n if include is not None and not isinstance(include, set):\n include = set(include)\n if exclude is not None and not isinstance(exclude, set):\n exclude = set(exclude)\n if isinstance(obj, BaseModel):\n encoder = getattr(obj.Config, \"json_encoders\", {})\n if custom_encoder:\n encoder.update(custom_encoder)\n if PYDANTIC_1:\n obj_dict = obj.dict(\n include=include,\n exclude=exclude,\n by_alias=by_alias,\n exclude_unset=bool(exclude_unset or skip_defaults),\n exclude_none=exclude_none,\n exclude_defaults=exclude_defaults,\n )\n else: # pragma: nocover\n if exclude_defaults:\n raise ValueError(\"Cannot use exclude_defaults\")\n obj_dict = obj.dict(\n include=include,\n exclude=exclude,\n by_alias=by_alias,\n skip_defaults=bool(exclude_unset or skip_defaults),\n )\n return jsonable_encoder(\n obj_dict,\n exclude_none=exclude_none,\n exclude_defaults=exclude_defaults,\n custom_encoder=encoder,\n sqlalchemy_safe=sqlalchemy_safe,\n )\n if isinstance(obj, Enum):\n return obj.value\n if isinstance(obj, PurePath):\n return str(obj)\n if isinstance(obj, (str, int, float, type(None))):\n return obj\n if isinstance(obj, dict):\n encoded_dict = {}\n for key, value in obj.items():\n if (\n (\n not sqlalchemy_safe\n or (not isinstance(key, str))\n or (not key.startswith(\"_sa\"))\n )\n and (value is not None or not exclude_none)\n and ((include and key in include) or key not in exclude)\n ):\n encoded_key = jsonable_encoder(\n key,\n by_alias=by_alias,\n exclude_unset=exclude_unset,\n exclude_none=exclude_none,\n custom_encoder=custom_encoder,\n sqlalchemy_safe=sqlalchemy_safe,\n )\n encoded_value = jsonable_encoder(\n value,\n by_alias=by_alias,\n exclude_unset=exclude_unset,\n exclude_none=exclude_none,\n custom_encoder=custom_encoder,\n sqlalchemy_safe=sqlalchemy_safe,\n )\n encoded_dict[encoded_key] = encoded_value\n return encoded_dict\n if isinstance(obj, (list, set, frozenset, GeneratorType, tuple)):\n encoded_list = []\n for item in obj:\n encoded_list.append(\n jsonable_encoder(\n item,\n include=include,\n exclude=exclude,\n by_alias=by_alias,\n exclude_unset=exclude_unset,\n exclude_defaults=exclude_defaults,\n exclude_none=exclude_none,\n custom_encoder=custom_encoder,\n sqlalchemy_safe=sqlalchemy_safe,\n )\n )\n return encoded_list\n\n if custom_encoder:\n if type(obj) in custom_encoder:\n return custom_encoder[type(obj)](obj)\n else:\n for encoder_type, encoder in custom_encoder.items():\n if isinstance(obj, encoder_type):\n return encoder(obj)\n\n if type(obj) in ENCODERS_BY_TYPE:\n return ENCODERS_BY_TYPE[type(obj)](obj)\n for encoder, classes_tuple in encoders_by_class_tuples.items():\n if isinstance(obj, classes_tuple):\n return encoder(obj)\n\n errors: List[Exception] = []\n try:\n data = dict(obj)\n except Exception as e:\n errors.append(e)\n try:\n data = vars(obj)\n except Exception as e:\n errors.append(e)\n raise ValueError(errors)\n return jsonable_encoder(\n data,\n by_alias=by_alias,\n exclude_unset=exclude_unset,\n exclude_defaults=exclude_defaults,\n exclude_none=exclude_none,\n custom_encoder=custom_encoder,\n sqlalchemy_safe=sqlalchemy_safe,\n )\n", "path": "fastapi/encoders.py"}]} | 2,460 | 108 |
gh_patches_debug_16721 | rasdani/github-patches | git_diff | python-telegram-bot__python-telegram-bot-985 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Webhook Broken Pipe after connection reset, kills dispatcher
### Steps to reproduce
1.
Standard Webhook with updater and dispatcher:
```
updater = Updater(TOKEN) PORT = int(os.environ.get('PORT', '5000')) # add handlers
updater.start_webhook(listen="0.0.0.0", port=PORT, url_path=TOKEN)
updater.bot.set_webhook("https://home.co.za/" + TOKEN)
dp = updater.dispatcher dp.add_error_handler(error)
updater.idle()
```
### Expected behaviour
Bot should run and remain responsive
### Actual behaviour
It runs, but after a few hours becomes unresponsive.
### Configuration
**Operating System:**
Linux Cappucino 4.4.0-104-generic #127-Ubuntu SMP Mon Dec 11 12:16:50 UTC 2017 i686 athlon i686 GNU/Linux
**Version of Python, python-telegram-bot & dependencies:**
```
python-telegram-bot 9.0.0
certifi 2017.11.05
future 0.16.0
Python 3.5.2 (default, Nov 23 2017, 16:37:01) [GCC 5.4.0 20160609]
```
### Logs
```
2018-01-10 03:54:56,480 - telegram.ext.updater - ERROR - unhandled exception
Traceback (most recent call last):
File "/usr/lib/python3.5/socketserver.py", line 313, in _handle_request_noblock
self.process_request(request, client_address)
File "/usr/lib/python3.5/socketserver.py", line 341, in process_request
self.finish_request(request, client_address)
File "/usr/lib/python3.5/socketserver.py", line 354, in finish_request
self.RequestHandlerClass(request, client_address, self)
File "/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py", line 62, in __init__
super(WebhookHandler, self).__init__(request, client_address, server)
File "/usr/lib/python3.5/socketserver.py", line 681, in __init__
self.handle()
File "/usr/lib/python3.5/http/server.py", line 422, in handle
self.handle_one_request()
File "/usr/lib/python3.5/http/server.py", line 390, in handle_one_request
self.raw_requestline = self.rfile.readline(65537)
File "/usr/lib/python3.5/socket.py", line 575, in readinto
return self._sock.recv_into(b)
ConnectionResetError: [Errno 104] Connection reset by peer
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py", line 149, in _thread_wrapper
target(*args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py", line 353, in _start_webhook
self.httpd.serve_forever(poll_interval=1)
File "/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py", line 41, in serve_forever
super(WebhookServer, self).serve_forever(poll_interval)
File "/usr/lib/python3.5/socketserver.py", line 234, in serve_forever
self._handle_request_noblock()
File "/usr/lib/python3.5/socketserver.py", line 315, in _handle_request_noblock
self.handle_error(request, client_address)
File "/usr/lib/python3.5/socketserver.py", line 371, in handle_error
print('Exception happened during processing of request from', end=' ')
BrokenPipeError: [Errno 32] Broken pipe
Exception in thread updater:
Traceback (most recent call last):
File "/usr/lib/python3.5/socketserver.py", line 313, in _handle_request_noblock
self.process_request(request, client_address)
File "/usr/lib/python3.5/socketserver.py", line 341, in process_request
self.finish_request(request, client_address)
File "/usr/lib/python3.5/socketserver.py", line 354, in finish_request
self.RequestHandlerClass(request, client_address, self)
File "/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py", line 62, in __init__
super(WebhookHandler, self).__init__(request, client_address, server)
File "/usr/lib/python3.5/socketserver.py", line 681, in __init__
self.handle()
File "/usr/lib/python3.5/http/server.py", line 422, in handle
self.handle_one_request()
File "/usr/lib/python3.5/http/server.py", line 390, in handle_one_request
self.raw_requestline = self.rfile.readline(65537)
File "/usr/lib/python3.5/socket.py", line 575, in readinto
return self._sock.recv_into(b)
ConnectionResetError: [Errno 104] Connection reset by peer
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.5/threading.py", line 914, in _bootstrap_inner
self.run()
File "/usr/lib/python3.5/threading.py", line 862, in run
self._target(*self._args, **self._kwargs)
File "/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py", line 149, in _thread_wrapper
target(*args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py", line 353, in _start_webhook
self.httpd.serve_forever(poll_interval=1)
File "/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py", line 41, in serve_forever
super(WebhookServer, self).serve_forever(poll_interval)
File "/usr/lib/python3.5/socketserver.py", line 234, in serve_forever
self._handle_request_noblock()
File "/usr/lib/python3.5/socketserver.py", line 315, in _handle_request_noblock
self.handle_error(request, client_address)
File "/usr/lib/python3.5/socketserver.py", line 371, in handle_error
print('Exception happened during processing of request from', end=' ')
BrokenPipeError: [Errno 32] Broken pipe
2018-01-10 03:54:56,601 - telegram.ext.dispatcher - CRITICAL - stopping due to exception in another thread
2018-01-10 03:54:56,601 - telegram.ext.dispatcher - DEBUG - Dispatcher thread stopped
2018-01-10 03:54:56,601 - telegram.ext.updater - DEBUG - dispatcher - ended
```
</issue>
<code>
[start of telegram/utils/webhookhandler.py]
1 #!/usr/bin/env python
2 #
3 # A library that provides a Python interface to the Telegram Bot API
4 # Copyright (C) 2015-2018
5 # Leandro Toledo de Souza <[email protected]>
6 #
7 # This program is free software: you can redistribute it and/or modify
8 # it under the terms of the GNU Lesser Public License as published by
9 # the Free Software Foundation, either version 3 of the License, or
10 # (at your option) any later version.
11 #
12 # This program is distributed in the hope that it will be useful,
13 # but WITHOUT ANY WARRANTY; without even the implied warranty of
14 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
15 # GNU Lesser Public License for more details.
16 #
17 # You should have received a copy of the GNU Lesser Public License
18 # along with this program. If not, see [http://www.gnu.org/licenses/].
19 import logging
20
21 from telegram import Update
22 from future.utils import bytes_to_native_str
23 from threading import Lock
24 try:
25 import ujson as json
26 except ImportError:
27 import json
28 try:
29 import BaseHTTPServer
30 except ImportError:
31 import http.server as BaseHTTPServer
32
33 logging.getLogger(__name__).addHandler(logging.NullHandler())
34
35
36 class _InvalidPost(Exception):
37
38 def __init__(self, http_code):
39 self.http_code = http_code
40 super(_InvalidPost, self).__init__()
41
42
43 class WebhookServer(BaseHTTPServer.HTTPServer, object):
44
45 def __init__(self, server_address, RequestHandlerClass, update_queue, webhook_path, bot):
46 super(WebhookServer, self).__init__(server_address, RequestHandlerClass)
47 self.logger = logging.getLogger(__name__)
48 self.update_queue = update_queue
49 self.webhook_path = webhook_path
50 self.bot = bot
51 self.is_running = False
52 self.server_lock = Lock()
53 self.shutdown_lock = Lock()
54
55 def serve_forever(self, poll_interval=0.5):
56 with self.server_lock:
57 self.is_running = True
58 self.logger.debug('Webhook Server started.')
59 super(WebhookServer, self).serve_forever(poll_interval)
60 self.logger.debug('Webhook Server stopped.')
61
62 def shutdown(self):
63 with self.shutdown_lock:
64 if not self.is_running:
65 self.logger.warn('Webhook Server already stopped.')
66 return
67 else:
68 super(WebhookServer, self).shutdown()
69 self.is_running = False
70
71
72 # WebhookHandler, process webhook calls
73 # Based on: https://github.com/eternnoir/pyTelegramBotAPI/blob/master/
74 # examples/webhook_examples/webhook_cpython_echo_bot.py
75 class WebhookHandler(BaseHTTPServer.BaseHTTPRequestHandler, object):
76 server_version = 'WebhookHandler/1.0'
77
78 def __init__(self, request, client_address, server):
79 self.logger = logging.getLogger(__name__)
80 super(WebhookHandler, self).__init__(request, client_address, server)
81
82 def do_HEAD(self):
83 self.send_response(200)
84 self.end_headers()
85
86 def do_GET(self):
87 self.send_response(200)
88 self.end_headers()
89
90 def do_POST(self):
91 self.logger.debug('Webhook triggered')
92 try:
93 self._validate_post()
94 clen = self._get_content_len()
95 except _InvalidPost as e:
96 self.send_error(e.http_code)
97 self.end_headers()
98 else:
99 buf = self.rfile.read(clen)
100 json_string = bytes_to_native_str(buf)
101
102 self.send_response(200)
103 self.end_headers()
104
105 self.logger.debug('Webhook received data: ' + json_string)
106
107 update = Update.de_json(json.loads(json_string), self.server.bot)
108
109 self.logger.debug('Received Update with ID %d on Webhook' % update.update_id)
110 self.server.update_queue.put(update)
111
112 def _validate_post(self):
113 if not (self.path == self.server.webhook_path and 'content-type' in self.headers and
114 self.headers['content-type'] == 'application/json'):
115 raise _InvalidPost(403)
116
117 def _get_content_len(self):
118 clen = self.headers.get('content-length')
119 if clen is None:
120 raise _InvalidPost(411)
121 try:
122 clen = int(clen)
123 except ValueError:
124 raise _InvalidPost(403)
125 if clen < 0:
126 raise _InvalidPost(403)
127 return clen
128
129 def log_message(self, format, *args):
130 """Log an arbitrary message.
131
132 This is used by all other logging functions.
133
134 It overrides ``BaseHTTPRequestHandler.log_message``, which logs to ``sys.stderr``.
135
136 The first argument, FORMAT, is a format string for the message to be logged. If the format
137 string contains any % escapes requiring parameters, they should be specified as subsequent
138 arguments (it's just like printf!).
139
140 The client ip is prefixed to every message.
141
142 """
143 self.logger.debug("%s - - %s" % (self.address_string(), format % args))
144
[end of telegram/utils/webhookhandler.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/telegram/utils/webhookhandler.py b/telegram/utils/webhookhandler.py
--- a/telegram/utils/webhookhandler.py
+++ b/telegram/utils/webhookhandler.py
@@ -62,12 +62,17 @@
def shutdown(self):
with self.shutdown_lock:
if not self.is_running:
- self.logger.warn('Webhook Server already stopped.')
+ self.logger.warning('Webhook Server already stopped.')
return
else:
super(WebhookServer, self).shutdown()
self.is_running = False
+ def handle_error(self, request, client_address):
+ """Handle an error gracefully."""
+ self.logger.debug('Exception happened during processing of request from %s',
+ client_address, exc_info=True)
+
# WebhookHandler, process webhook calls
# Based on: https://github.com/eternnoir/pyTelegramBotAPI/blob/master/
| {"golden_diff": "diff --git a/telegram/utils/webhookhandler.py b/telegram/utils/webhookhandler.py\n--- a/telegram/utils/webhookhandler.py\n+++ b/telegram/utils/webhookhandler.py\n@@ -62,12 +62,17 @@\n def shutdown(self):\n with self.shutdown_lock:\n if not self.is_running:\n- self.logger.warn('Webhook Server already stopped.')\n+ self.logger.warning('Webhook Server already stopped.')\n return\n else:\n super(WebhookServer, self).shutdown()\n self.is_running = False\n \n+ def handle_error(self, request, client_address):\n+ \"\"\"Handle an error gracefully.\"\"\"\n+ self.logger.debug('Exception happened during processing of request from %s',\n+ client_address, exc_info=True)\n+\n \n # WebhookHandler, process webhook calls\n # Based on: https://github.com/eternnoir/pyTelegramBotAPI/blob/master/\n", "issue": "Webhook Broken Pipe after connection reset, kills dispatcher\n### Steps to reproduce\r\n1.\r\nStandard Webhook with updater and dispatcher:\r\n```\r\nupdater = Updater(TOKEN) PORT = int(os.environ.get('PORT', '5000')) # add handlers \r\nupdater.start_webhook(listen=\"0.0.0.0\", port=PORT, url_path=TOKEN) \r\nupdater.bot.set_webhook(\"https://home.co.za/\" + TOKEN) \r\ndp = updater.dispatcher dp.add_error_handler(error) \r\nupdater.idle()\r\n```\r\n\r\n\r\n### Expected behaviour\r\nBot should run and remain responsive\r\n\r\n### Actual behaviour\r\nIt runs, but after a few hours becomes unresponsive.\r\n\r\n### Configuration\r\n**Operating System:**\r\nLinux Cappucino 4.4.0-104-generic #127-Ubuntu SMP Mon Dec 11 12:16:50 UTC 2017 i686 athlon i686 GNU/Linux\r\n\r\n**Version of Python, python-telegram-bot & dependencies:**\r\n\r\n```\r\npython-telegram-bot 9.0.0\r\ncertifi 2017.11.05\r\nfuture 0.16.0\r\nPython 3.5.2 (default, Nov 23 2017, 16:37:01) [GCC 5.4.0 20160609]\r\n```\r\n\r\n### Logs\r\n```\r\n2018-01-10 03:54:56,480 - telegram.ext.updater - ERROR - unhandled exception\r\nTraceback (most recent call last):\r\n File \"/usr/lib/python3.5/socketserver.py\", line 313, in _handle_request_noblock\r\n self.process_request(request, client_address)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 341, in process_request\r\n self.finish_request(request, client_address)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 354, in finish_request\r\n self.RequestHandlerClass(request, client_address, self)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py\", line 62, in __init__\r\n super(WebhookHandler, self).__init__(request, client_address, server)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 681, in __init__\r\n self.handle()\r\n File \"/usr/lib/python3.5/http/server.py\", line 422, in handle\r\n self.handle_one_request()\r\n File \"/usr/lib/python3.5/http/server.py\", line 390, in handle_one_request\r\n self.raw_requestline = self.rfile.readline(65537)\r\n File \"/usr/lib/python3.5/socket.py\", line 575, in readinto\r\n return self._sock.recv_into(b)\r\nConnectionResetError: [Errno 104] Connection reset by peer\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py\", line 149, in _thread_wrapper\r\n target(*args, **kwargs)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py\", line 353, in _start_webhook\r\n self.httpd.serve_forever(poll_interval=1)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py\", line 41, in serve_forever\r\n super(WebhookServer, self).serve_forever(poll_interval)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 234, in serve_forever\r\n self._handle_request_noblock()\r\n File \"/usr/lib/python3.5/socketserver.py\", line 315, in _handle_request_noblock\r\n self.handle_error(request, client_address)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 371, in handle_error\r\n print('Exception happened during processing of request from', end=' ')\r\nBrokenPipeError: [Errno 32] Broken pipe\r\nException in thread updater:\r\nTraceback (most recent call last):\r\n File \"/usr/lib/python3.5/socketserver.py\", line 313, in _handle_request_noblock\r\n self.process_request(request, client_address)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 341, in process_request\r\n self.finish_request(request, client_address)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 354, in finish_request\r\n self.RequestHandlerClass(request, client_address, self)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py\", line 62, in __init__\r\n super(WebhookHandler, self).__init__(request, client_address, server)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 681, in __init__\r\n self.handle()\r\n File \"/usr/lib/python3.5/http/server.py\", line 422, in handle\r\n self.handle_one_request()\r\n File \"/usr/lib/python3.5/http/server.py\", line 390, in handle_one_request\r\n self.raw_requestline = self.rfile.readline(65537)\r\n File \"/usr/lib/python3.5/socket.py\", line 575, in readinto\r\n return self._sock.recv_into(b)\r\nConnectionResetError: [Errno 104] Connection reset by peer\r\n\r\nDuring handling of the above exception, another exception occurred:\r\n\r\nTraceback (most recent call last):\r\n File \"/usr/lib/python3.5/threading.py\", line 914, in _bootstrap_inner\r\n self.run()\r\n File \"/usr/lib/python3.5/threading.py\", line 862, in run\r\n self._target(*self._args, **self._kwargs)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py\", line 149, in _thread_wrapper\r\n target(*args, **kwargs)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/ext/updater.py\", line 353, in _start_webhook\r\n self.httpd.serve_forever(poll_interval=1)\r\n File \"/usr/local/lib/python3.5/dist-packages/telegram/utils/webhookhandler.py\", line 41, in serve_forever\r\n super(WebhookServer, self).serve_forever(poll_interval)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 234, in serve_forever\r\n self._handle_request_noblock()\r\n File \"/usr/lib/python3.5/socketserver.py\", line 315, in _handle_request_noblock\r\n self.handle_error(request, client_address)\r\n File \"/usr/lib/python3.5/socketserver.py\", line 371, in handle_error\r\n print('Exception happened during processing of request from', end=' ')\r\nBrokenPipeError: [Errno 32] Broken pipe\r\n\r\n2018-01-10 03:54:56,601 - telegram.ext.dispatcher - CRITICAL - stopping due to exception in another thread\r\n2018-01-10 03:54:56,601 - telegram.ext.dispatcher - DEBUG - Dispatcher thread stopped\r\n2018-01-10 03:54:56,601 - telegram.ext.updater - DEBUG - dispatcher - ended\r\n```\r\n\r\n \n", "before_files": [{"content": "#!/usr/bin/env python\n#\n# A library that provides a Python interface to the Telegram Bot API\n# Copyright (C) 2015-2018\n# Leandro Toledo de Souza <[email protected]>\n#\n# This program is free software: you can redistribute it and/or modify\n# it under the terms of the GNU Lesser Public License as published by\n# the Free Software Foundation, either version 3 of the License, or\n# (at your option) any later version.\n#\n# This program is distributed in the hope that it will be useful,\n# but WITHOUT ANY WARRANTY; without even the implied warranty of\n# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\n# GNU Lesser Public License for more details.\n#\n# You should have received a copy of the GNU Lesser Public License\n# along with this program. If not, see [http://www.gnu.org/licenses/].\nimport logging\n\nfrom telegram import Update\nfrom future.utils import bytes_to_native_str\nfrom threading import Lock\ntry:\n import ujson as json\nexcept ImportError:\n import json\ntry:\n import BaseHTTPServer\nexcept ImportError:\n import http.server as BaseHTTPServer\n\nlogging.getLogger(__name__).addHandler(logging.NullHandler())\n\n\nclass _InvalidPost(Exception):\n\n def __init__(self, http_code):\n self.http_code = http_code\n super(_InvalidPost, self).__init__()\n\n\nclass WebhookServer(BaseHTTPServer.HTTPServer, object):\n\n def __init__(self, server_address, RequestHandlerClass, update_queue, webhook_path, bot):\n super(WebhookServer, self).__init__(server_address, RequestHandlerClass)\n self.logger = logging.getLogger(__name__)\n self.update_queue = update_queue\n self.webhook_path = webhook_path\n self.bot = bot\n self.is_running = False\n self.server_lock = Lock()\n self.shutdown_lock = Lock()\n\n def serve_forever(self, poll_interval=0.5):\n with self.server_lock:\n self.is_running = True\n self.logger.debug('Webhook Server started.')\n super(WebhookServer, self).serve_forever(poll_interval)\n self.logger.debug('Webhook Server stopped.')\n\n def shutdown(self):\n with self.shutdown_lock:\n if not self.is_running:\n self.logger.warn('Webhook Server already stopped.')\n return\n else:\n super(WebhookServer, self).shutdown()\n self.is_running = False\n\n\n# WebhookHandler, process webhook calls\n# Based on: https://github.com/eternnoir/pyTelegramBotAPI/blob/master/\n# examples/webhook_examples/webhook_cpython_echo_bot.py\nclass WebhookHandler(BaseHTTPServer.BaseHTTPRequestHandler, object):\n server_version = 'WebhookHandler/1.0'\n\n def __init__(self, request, client_address, server):\n self.logger = logging.getLogger(__name__)\n super(WebhookHandler, self).__init__(request, client_address, server)\n\n def do_HEAD(self):\n self.send_response(200)\n self.end_headers()\n\n def do_GET(self):\n self.send_response(200)\n self.end_headers()\n\n def do_POST(self):\n self.logger.debug('Webhook triggered')\n try:\n self._validate_post()\n clen = self._get_content_len()\n except _InvalidPost as e:\n self.send_error(e.http_code)\n self.end_headers()\n else:\n buf = self.rfile.read(clen)\n json_string = bytes_to_native_str(buf)\n\n self.send_response(200)\n self.end_headers()\n\n self.logger.debug('Webhook received data: ' + json_string)\n\n update = Update.de_json(json.loads(json_string), self.server.bot)\n\n self.logger.debug('Received Update with ID %d on Webhook' % update.update_id)\n self.server.update_queue.put(update)\n\n def _validate_post(self):\n if not (self.path == self.server.webhook_path and 'content-type' in self.headers and\n self.headers['content-type'] == 'application/json'):\n raise _InvalidPost(403)\n\n def _get_content_len(self):\n clen = self.headers.get('content-length')\n if clen is None:\n raise _InvalidPost(411)\n try:\n clen = int(clen)\n except ValueError:\n raise _InvalidPost(403)\n if clen < 0:\n raise _InvalidPost(403)\n return clen\n\n def log_message(self, format, *args):\n \"\"\"Log an arbitrary message.\n\n This is used by all other logging functions.\n\n It overrides ``BaseHTTPRequestHandler.log_message``, which logs to ``sys.stderr``.\n\n The first argument, FORMAT, is a format string for the message to be logged. If the format\n string contains any % escapes requiring parameters, they should be specified as subsequent\n arguments (it's just like printf!).\n\n The client ip is prefixed to every message.\n\n \"\"\"\n self.logger.debug(\"%s - - %s\" % (self.address_string(), format % args))\n", "path": "telegram/utils/webhookhandler.py"}]} | 3,627 | 195 |
gh_patches_debug_28459 | rasdani/github-patches | git_diff | saleor__saleor-336 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Removing category redirects to category update view
Confirmation modal contains "update" button that redirects to update view, instead of sending a POST request to remove the category.
</issue>
<code>
[start of saleor/dashboard/category/views.py]
1 from django.contrib import messages
2 from django.shortcuts import get_object_or_404, redirect
3 from django.template.response import TemplateResponse
4 from django.utils.translation import ugettext_lazy as _
5
6 from ...product.models import Category
7 from ..views import staff_member_required
8 from .forms import CategoryForm
9
10
11 @staff_member_required
12 def category_list(request, root_pk=None):
13 root = None
14 path = None
15 categories = Category.tree.root_nodes()
16 if root_pk:
17 root = get_object_or_404(Category, pk=root_pk)
18 path = root.get_ancestors(include_self=True) if root else []
19 categories = root.get_children()
20 ctx = {'categories': categories, 'path': path, 'root': root}
21 return TemplateResponse(request, 'dashboard/category/list.html', ctx)
22
23
24 @staff_member_required
25 def category_create(request, root_pk=None):
26 category = Category()
27 form = CategoryForm(request.POST or None, parent_pk=root_pk)
28 if form.is_valid():
29 category = form.save()
30 messages.success(request, _('Added category %s') % category)
31 if root_pk:
32 return redirect('dashboard:category-list', root_pk=root_pk)
33 else:
34 return redirect('dashboard:category-list')
35 ctx = {'category': category, 'form': form}
36 return TemplateResponse(request, 'dashboard/category/detail.html', ctx)
37
38
39 @staff_member_required
40 def category_edit(request, root_pk=None):
41 category = get_object_or_404(Category, pk=root_pk)
42 form = CategoryForm(request.POST or None, instance=category,
43 parent_pk=category.parent_id)
44 status = 200
45 if form.is_valid():
46 category = form.save()
47 messages.success(request, _('Added category %s') % category)
48 if root_pk:
49 return redirect('dashboard:category-list', root_pk=root_pk)
50 else:
51 return redirect('dashboard:category-list')
52 elif form.errors:
53 status = 400
54 ctx = {'category': category, 'form': form, 'status': status}
55 template = 'dashboard/category/modal_edit.html'
56 return TemplateResponse(request, template, ctx, status=status)
57
58
59 @staff_member_required
60 def category_delete(request, pk):
61 category = get_object_or_404(Category, pk=pk)
62 if request.method == 'POST':
63 category.delete()
64 messages.success(request, _('Deleted category %s') % category)
65 root_pk = None
66 if category.parent:
67 root_pk = category.parent.pk
68 if root_pk:
69 return redirect('dashboard:category-list', root_pk=root_pk)
70 else:
71 return redirect('dashboard:category-list')
72 ctx = {'category': category,
73 'descendants': list(category.get_descendants()),
74 'products_count': len(category.products.all())}
75 return TemplateResponse(request,
76 'dashboard/category/modal_category_confirm_delete.html',
77 ctx)
78
[end of saleor/dashboard/category/views.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/saleor/dashboard/category/views.py b/saleor/dashboard/category/views.py
--- a/saleor/dashboard/category/views.py
+++ b/saleor/dashboard/category/views.py
@@ -1,4 +1,6 @@
from django.contrib import messages
+from django.core.urlresolvers import reverse
+from django.http import JsonResponse
from django.shortcuts import get_object_or_404, redirect
from django.template.response import TemplateResponse
from django.utils.translation import ugettext_lazy as _
@@ -66,12 +68,19 @@
if category.parent:
root_pk = category.parent.pk
if root_pk:
+ if request.is_ajax():
+ response = {'redirectUrl': reverse(
+ 'dashboard:category-list', kwargs={'root_pk': root_pk})}
+ return JsonResponse(response)
return redirect('dashboard:category-list', root_pk=root_pk)
else:
+ if request.is_ajax():
+ response = {'redirectUrl': reverse('dashboard:category-list')}
+ return JsonResponse(response)
return redirect('dashboard:category-list')
ctx = {'category': category,
'descendants': list(category.get_descendants()),
'products_count': len(category.products.all())}
return TemplateResponse(request,
- 'dashboard/category/modal_category_confirm_delete.html',
+ 'dashboard/category/modal_delete.html',
ctx)
| {"golden_diff": "diff --git a/saleor/dashboard/category/views.py b/saleor/dashboard/category/views.py\n--- a/saleor/dashboard/category/views.py\n+++ b/saleor/dashboard/category/views.py\n@@ -1,4 +1,6 @@\n from django.contrib import messages\n+from django.core.urlresolvers import reverse\n+from django.http import JsonResponse\n from django.shortcuts import get_object_or_404, redirect\n from django.template.response import TemplateResponse\n from django.utils.translation import ugettext_lazy as _\n@@ -66,12 +68,19 @@\n if category.parent:\n root_pk = category.parent.pk\n if root_pk:\n+ if request.is_ajax():\n+ response = {'redirectUrl': reverse(\n+ 'dashboard:category-list', kwargs={'root_pk': root_pk})}\n+ return JsonResponse(response)\n return redirect('dashboard:category-list', root_pk=root_pk)\n else:\n+ if request.is_ajax():\n+ response = {'redirectUrl': reverse('dashboard:category-list')}\n+ return JsonResponse(response)\n return redirect('dashboard:category-list')\n ctx = {'category': category,\n 'descendants': list(category.get_descendants()),\n 'products_count': len(category.products.all())}\n return TemplateResponse(request,\n- 'dashboard/category/modal_category_confirm_delete.html',\n+ 'dashboard/category/modal_delete.html',\n ctx)\n", "issue": "Removing category redirects to category update view \nConfirmation modal contains \"update\" button that redirects to update view, instead of sending a POST request to remove the category.\n\n", "before_files": [{"content": "from django.contrib import messages\nfrom django.shortcuts import get_object_or_404, redirect\nfrom django.template.response import TemplateResponse\nfrom django.utils.translation import ugettext_lazy as _\n\nfrom ...product.models import Category\nfrom ..views import staff_member_required\nfrom .forms import CategoryForm\n\n\n@staff_member_required\ndef category_list(request, root_pk=None):\n root = None\n path = None\n categories = Category.tree.root_nodes()\n if root_pk:\n root = get_object_or_404(Category, pk=root_pk)\n path = root.get_ancestors(include_self=True) if root else []\n categories = root.get_children()\n ctx = {'categories': categories, 'path': path, 'root': root}\n return TemplateResponse(request, 'dashboard/category/list.html', ctx)\n\n\n@staff_member_required\ndef category_create(request, root_pk=None):\n category = Category()\n form = CategoryForm(request.POST or None, parent_pk=root_pk)\n if form.is_valid():\n category = form.save()\n messages.success(request, _('Added category %s') % category)\n if root_pk:\n return redirect('dashboard:category-list', root_pk=root_pk)\n else:\n return redirect('dashboard:category-list')\n ctx = {'category': category, 'form': form}\n return TemplateResponse(request, 'dashboard/category/detail.html', ctx)\n\n\n@staff_member_required\ndef category_edit(request, root_pk=None):\n category = get_object_or_404(Category, pk=root_pk)\n form = CategoryForm(request.POST or None, instance=category,\n parent_pk=category.parent_id)\n status = 200\n if form.is_valid():\n category = form.save()\n messages.success(request, _('Added category %s') % category)\n if root_pk:\n return redirect('dashboard:category-list', root_pk=root_pk)\n else:\n return redirect('dashboard:category-list')\n elif form.errors:\n status = 400\n ctx = {'category': category, 'form': form, 'status': status}\n template = 'dashboard/category/modal_edit.html'\n return TemplateResponse(request, template, ctx, status=status)\n\n\n@staff_member_required\ndef category_delete(request, pk):\n category = get_object_or_404(Category, pk=pk)\n if request.method == 'POST':\n category.delete()\n messages.success(request, _('Deleted category %s') % category)\n root_pk = None\n if category.parent:\n root_pk = category.parent.pk\n if root_pk:\n return redirect('dashboard:category-list', root_pk=root_pk)\n else:\n return redirect('dashboard:category-list')\n ctx = {'category': category,\n 'descendants': list(category.get_descendants()),\n 'products_count': len(category.products.all())}\n return TemplateResponse(request,\n 'dashboard/category/modal_category_confirm_delete.html',\n ctx)\n", "path": "saleor/dashboard/category/views.py"}]} | 1,335 | 289 |
gh_patches_debug_5289 | rasdani/github-patches | git_diff | freedomofpress__securedrop-7074 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Release SecureDrop 2.7.0
This is a tracking issue for the release of SecureDrop 2.7.0
Tentatively scheduled as follows:
**Pre-release announcement:** ~10-19-2023~10-26-2023
**Release date:** ~10-26-2023~11-07-2023
**Release manager:** @zenmonkeykstop
**Deputy release manager:** @cfm
**Localization manager:** @cfm
**Communications manager:** @nathandyer
_SecureDrop maintainers and testers:_ As you QA 2.7.0, please report back your testing results as comments on this ticket. File GitHub issues for any problems found, tag them "QA: Release".
Test debian packages will be posted on https://apt-test.freedom.press signed with [the test key](https://gist.githubusercontent.com/conorsch/ec4008b111bc3142fca522693f3cce7e/raw/2968621e8ad92db4505a31fcc5776422d7d26729/apt-test%2520apt%2520pubkey).
# [QA Matrix for 2.7.0](https://docs.google.com/spreadsheets/d/1Q_dOST_87ezW3L1LO-u7Nl18h6bQsYUbQHYPGQbG448/edit#gid=361662860)
# [Test Plan for 2.7.0](https://github.com/freedomofpress/securedrop/wiki/2.7.0-Test-Plan)
# Prepare release candidate (2.7.0~rc1)
- [ ] Link to latest version of Tails, including release candidates, to test against during QA
- [x] Prepare 2.7.0~rc1 release changelog
- [x] Branch off release/2.7.0 from develop
- [x] Prepare 2.7.0
- [ ] Build debs, preserving build log, and put up `2.7.0~rc1` on test apt server
- [ ] Commit build log.
# Prepare release candidate (2.7.0~rc2)
- [x] Prepare 2.7.0~rc2 release changelog
- [x] Branch off release/2.7.0 from develop
- [x] Prepare 2.7.0
- [x] Build debs, preserving build log, and put up `2.7.0~rc2` on test apt server
- [x] Commit build log.
# Prepare release candidate (2.7.0~rc3)
- [x] Prepare 2.7.0~rc3 release changelog
- [x] Branch off release/2.7.0 from develop
- [x] Prepare 2.7.0
- [x] Build debs, preserving build log, and put up `2.7.0~rc3` on test apt server
- [x] Commit build log.
# Prepare release candidate (2.7.0~rc4)
- [x] Prepare 2.7.0~rc4 release changelog
- [x] Branch off release/2.7.0 from develop
- [x] Prepare 2.7.0-rc4
- [x] Build debs, preserving build log, and put up `2.7.0~rc4` on test apt server
- [x] Commit build log.
After each test, please update the QA matrix and post details for Basic Server Testing, Application Acceptance Testing and release-specific testing below in comments to this ticket.
# Final release
- [x] Ensure builder in release branch is updated and/or update builder image
- [x] Push signed tag
- [x] Pre-Flight: Test updater logic in Tails (apt-qa tracks the `release` branch in the LFS repo)
- [x] Build final Debian packages(and preserve build log)
- [x] Commit package build log to https://github.com/freedomofpress/build-logs
- [x] Pre-Flight: Test that install and upgrade from 2.6.1 to 2.7.0 works w/ prod repo debs (apt-qa.freedom.press polls the `release` branch in the LFS repo for the debs)
- [x] Flip apt QA server to prod status (merge to `main` in the LFS repo)
- [ ] Merge Docs branch changes to ``main`` and verify new docs build in securedrop-docs repo
- [x] Prepare release messaging
# Post release
- [x] Create GitHub release object
- [x] Once release object is created, update versions in `securedrop-docs` and Wagtail
- [x] Verify new docs show up on https://docs.securedrop.org
- [x] Publish announcements
- [ ] Merge changelog back to `develop`
- [ ] Update roadmap wiki page: https://github.com/freedomofpress/securedrop/wiki/Development-Roadmap
</issue>
<code>
[start of securedrop/version.py]
1 __version__ = "2.7.0~rc1"
2
[end of securedrop/version.py]
[start of securedrop/setup.py]
1 import setuptools
2
3 long_description = "The SecureDrop whistleblower platform."
4
5 setuptools.setup(
6 name="securedrop-app-code",
7 version="2.7.0~rc1",
8 author="Freedom of the Press Foundation",
9 author_email="[email protected]",
10 description="SecureDrop Server",
11 long_description=long_description,
12 long_description_content_type="text/markdown",
13 license="AGPLv3+",
14 python_requires=">=3.8",
15 url="https://github.com/freedomofpress/securedrop",
16 classifiers=[
17 "Development Status :: 5 - Stable",
18 "Programming Language :: Python :: 3",
19 "Topic :: Software Development :: Libraries :: Python Modules",
20 "License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)",
21 "Intended Audience :: Developers",
22 "Operating System :: OS Independent",
23 ],
24 )
25
[end of securedrop/setup.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/securedrop/setup.py b/securedrop/setup.py
--- a/securedrop/setup.py
+++ b/securedrop/setup.py
@@ -4,7 +4,7 @@
setuptools.setup(
name="securedrop-app-code",
- version="2.7.0~rc1",
+ version="2.8.0~rc1",
author="Freedom of the Press Foundation",
author_email="[email protected]",
description="SecureDrop Server",
diff --git a/securedrop/version.py b/securedrop/version.py
--- a/securedrop/version.py
+++ b/securedrop/version.py
@@ -1 +1 @@
-__version__ = "2.7.0~rc1"
+__version__ = "2.8.0~rc1"
| {"golden_diff": "diff --git a/securedrop/setup.py b/securedrop/setup.py\n--- a/securedrop/setup.py\n+++ b/securedrop/setup.py\n@@ -4,7 +4,7 @@\n \n setuptools.setup(\n name=\"securedrop-app-code\",\n- version=\"2.7.0~rc1\",\n+ version=\"2.8.0~rc1\",\n author=\"Freedom of the Press Foundation\",\n author_email=\"[email protected]\",\n description=\"SecureDrop Server\",\ndiff --git a/securedrop/version.py b/securedrop/version.py\n--- a/securedrop/version.py\n+++ b/securedrop/version.py\n@@ -1 +1 @@\n-__version__ = \"2.7.0~rc1\"\n+__version__ = \"2.8.0~rc1\"\n", "issue": "Release SecureDrop 2.7.0\nThis is a tracking issue for the release of SecureDrop 2.7.0\r\n\r\nTentatively scheduled as follows:\r\n\r\n**Pre-release announcement:** ~10-19-2023~10-26-2023\r\n**Release date:** ~10-26-2023~11-07-2023\r\n\r\n**Release manager:** @zenmonkeykstop \r\n**Deputy release manager:** @cfm\r\n**Localization manager:** @cfm\r\n**Communications manager:** @nathandyer \r\n\r\n_SecureDrop maintainers and testers:_ As you QA 2.7.0, please report back your testing results as comments on this ticket. File GitHub issues for any problems found, tag them \"QA: Release\".\r\n\r\nTest debian packages will be posted on https://apt-test.freedom.press signed with [the test key](https://gist.githubusercontent.com/conorsch/ec4008b111bc3142fca522693f3cce7e/raw/2968621e8ad92db4505a31fcc5776422d7d26729/apt-test%2520apt%2520pubkey).\r\n\r\n# [QA Matrix for 2.7.0](https://docs.google.com/spreadsheets/d/1Q_dOST_87ezW3L1LO-u7Nl18h6bQsYUbQHYPGQbG448/edit#gid=361662860)\r\n# [Test Plan for 2.7.0](https://github.com/freedomofpress/securedrop/wiki/2.7.0-Test-Plan)\r\n\r\n# Prepare release candidate (2.7.0~rc1)\r\n- [ ] Link to latest version of Tails, including release candidates, to test against during QA\r\n- [x] Prepare 2.7.0~rc1 release changelog\r\n- [x] Branch off release/2.7.0 from develop\r\n- [x] Prepare 2.7.0\r\n- [ ] Build debs, preserving build log, and put up `2.7.0~rc1` on test apt server\r\n- [ ] Commit build log.\r\n\r\n# Prepare release candidate (2.7.0~rc2)\r\n- [x] Prepare 2.7.0~rc2 release changelog\r\n- [x] Branch off release/2.7.0 from develop\r\n- [x] Prepare 2.7.0\r\n- [x] Build debs, preserving build log, and put up `2.7.0~rc2` on test apt server\r\n- [x] Commit build log.\r\n\r\n\r\n# Prepare release candidate (2.7.0~rc3)\r\n- [x] Prepare 2.7.0~rc3 release changelog\r\n- [x] Branch off release/2.7.0 from develop\r\n- [x] Prepare 2.7.0\r\n- [x] Build debs, preserving build log, and put up `2.7.0~rc3` on test apt server\r\n- [x] Commit build log.\r\n\r\n# Prepare release candidate (2.7.0~rc4)\r\n- [x] Prepare 2.7.0~rc4 release changelog\r\n- [x] Branch off release/2.7.0 from develop\r\n- [x] Prepare 2.7.0-rc4\r\n- [x] Build debs, preserving build log, and put up `2.7.0~rc4` on test apt server\r\n- [x] Commit build log.\r\n\r\n\r\nAfter each test, please update the QA matrix and post details for Basic Server Testing, Application Acceptance Testing and release-specific testing below in comments to this ticket.\r\n\r\n# Final release\r\n- [x] Ensure builder in release branch is updated and/or update builder image\r\n- [x] Push signed tag \r\n- [x] Pre-Flight: Test updater logic in Tails (apt-qa tracks the `release` branch in the LFS repo)\r\n- [x] Build final Debian packages(and preserve build log)\r\n- [x] Commit package build log to https://github.com/freedomofpress/build-logs\r\n- [x] Pre-Flight: Test that install and upgrade from 2.6.1 to 2.7.0 works w/ prod repo debs (apt-qa.freedom.press polls the `release` branch in the LFS repo for the debs)\r\n- [x] Flip apt QA server to prod status (merge to `main` in the LFS repo)\r\n- [ ] Merge Docs branch changes to ``main`` and verify new docs build in securedrop-docs repo\r\n- [x] Prepare release messaging\r\n\r\n# Post release\r\n- [x] Create GitHub release object \r\n- [x] Once release object is created, update versions in `securedrop-docs` and Wagtail\r\n- [x] Verify new docs show up on https://docs.securedrop.org\r\n- [x] Publish announcements\r\n- [ ] Merge changelog back to `develop`\r\n- [ ] Update roadmap wiki page: https://github.com/freedomofpress/securedrop/wiki/Development-Roadmap\n", "before_files": [{"content": "__version__ = \"2.7.0~rc1\"\n", "path": "securedrop/version.py"}, {"content": "import setuptools\n\nlong_description = \"The SecureDrop whistleblower platform.\"\n\nsetuptools.setup(\n name=\"securedrop-app-code\",\n version=\"2.7.0~rc1\",\n author=\"Freedom of the Press Foundation\",\n author_email=\"[email protected]\",\n description=\"SecureDrop Server\",\n long_description=long_description,\n long_description_content_type=\"text/markdown\",\n license=\"AGPLv3+\",\n python_requires=\">=3.8\",\n url=\"https://github.com/freedomofpress/securedrop\",\n classifiers=[\n \"Development Status :: 5 - Stable\",\n \"Programming Language :: Python :: 3\",\n \"Topic :: Software Development :: Libraries :: Python Modules\",\n \"License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)\",\n \"Intended Audience :: Developers\",\n \"Operating System :: OS Independent\",\n ],\n)\n", "path": "securedrop/setup.py"}]} | 1,943 | 175 |
gh_patches_debug_2305 | rasdani/github-patches | git_diff | ivy-llc__ivy-22695 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
clone
</issue>
<code>
[start of ivy/functional/frontends/paddle/tensor/creation.py]
1 # global
2 import ivy
3 from ivy.func_wrapper import with_unsupported_dtypes, with_supported_dtypes
4 from .tensor import Tensor
5 from ivy.functional.frontends.paddle.func_wrapper import (
6 to_ivy_arrays_and_back,
7 )
8
9
10 @with_unsupported_dtypes({"2.5.1 and below": ("float16", "bfloat16")}, "paddle")
11 @to_ivy_arrays_and_back
12 def arange(start, end=None, step=1, dtype=None, name=None):
13 return ivy.arange(start, end, step=step, dtype=dtype)
14
15
16 @with_supported_dtypes(
17 {"2.5.1 and below": ("float16", "float32", "float64", "int32", "int64", "bool")},
18 "paddle",
19 )
20 @to_ivy_arrays_and_back
21 def assign(x, output=None):
22 if len(ivy.shape(x)) == 0:
23 x = ivy.reshape(ivy.Array(x), (1,))
24 if ivy.exists(output):
25 output = ivy.reshape(ivy.Array(output), (1,))
26 else:
27 x = ivy.reshape(x, ivy.shape(x))
28 ret = ivy.copy_array(x, to_ivy_array=False, out=output)
29 return ret
30
31
32 @with_supported_dtypes(
33 {"2.5.1 and below": ("float32", "float64")},
34 "paddle",
35 )
36 @to_ivy_arrays_and_back
37 def complex(real, imag, name=None):
38 assert real.dtype == imag.dtype, (
39 "(InvalidArgument) The type of data we are trying to retrieve does not match"
40 " the type of data currently contained in the container."
41 )
42 complex_dtype = "complex64" if real.dtype == "float32" else "complex128"
43 imag_cmplx = ivy.astype(imag, complex_dtype) * 1j
44 complex_array = real + imag_cmplx
45 return complex_array
46
47
48 @with_supported_dtypes(
49 {"2.5.1 and below": ("float32", "float64", "int32", "int64")}, "paddle"
50 )
51 @to_ivy_arrays_and_back
52 def diag(x, offset=0, padding_value=0, name=None):
53 if len(x.shape) == 1:
54 padding_value = ivy.astype(padding_value, ivy.dtype(x))
55 ret = ivy.diagflat(x, offset=offset, padding_value=padding_value)
56 if len(ret.shape) != 2:
57 ret = ivy.reshape(ret, (1, 1))
58 else:
59 ret = ivy.diag(x, k=offset)
60 return ret
61
62
63 @with_supported_dtypes(
64 {"2.5.1 and below": ("float32", "float64", "int32", "int64")}, "paddle"
65 )
66 @to_ivy_arrays_and_back
67 def diagflat(x, offset=0, name=None):
68 arr = ivy.diagflat(x, offset=offset)
69 return arr
70
71
72 @to_ivy_arrays_and_back
73 def empty(shape, dtype=None):
74 return ivy.empty(shape=shape, dtype=dtype)
75
76
77 @to_ivy_arrays_and_back
78 def empty_like(x, dtype=None, name=None):
79 return ivy.empty_like(x, dtype=dtype)
80
81
82 @to_ivy_arrays_and_back
83 def eye(num_rows, num_columns=None, dtype=None, name=None):
84 return ivy.eye(num_rows, num_columns, dtype=dtype)
85
86
87 @to_ivy_arrays_and_back
88 def full(shape, fill_value, /, *, dtype=None, name=None):
89 dtype = "float32" if dtype is None else dtype
90 return ivy.full(shape, fill_value, dtype=dtype)
91
92
93 @to_ivy_arrays_and_back
94 def full_like(x, fill_value, /, *, dtype=None, name=None):
95 dtype = x.dtype if dtype is None else dtype
96 return ivy.full_like(x, fill_value, dtype=dtype)
97
98
99 @with_supported_dtypes(
100 {"2.5.1 and below": ("float32", "float64", "int32", "int64")}, "paddle"
101 )
102 @to_ivy_arrays_and_back
103 def linspace(start, stop, num, dtype=None, name=None):
104 return ivy.linspace(start, stop, num=num, dtype=dtype)
105
106
107 @with_supported_dtypes(
108 {"2.5.1 and below": ("float32", "float64", "int32", "int64")}, "paddle"
109 )
110 @to_ivy_arrays_and_back
111 def logspace(start, stop, num, base=10.0, dtype=None, name=None):
112 return ivy.logspace(start, stop, num=num, base=base, dtype=dtype)
113
114
115 @with_supported_dtypes(
116 {"2.5.1 and below": ("float32", "float64", "int32", "int64")}, "paddle"
117 )
118 @to_ivy_arrays_and_back
119 def meshgrid(*args, **kwargs):
120 return ivy.meshgrid(*args, indexing="ij")
121
122
123 @with_unsupported_dtypes({"2.5.1 and below": "int8"}, "paddle")
124 @to_ivy_arrays_and_back
125 def ones(shape, /, *, dtype=None, name=None):
126 dtype = "float32" if dtype is None else dtype
127 return ivy.ones(shape, dtype=dtype)
128
129
130 @with_unsupported_dtypes(
131 {"2.5.1 and below": ("uint8", "int8", "complex64", "complex128")}, "paddle"
132 )
133 @to_ivy_arrays_and_back
134 def ones_like(x, /, *, dtype=None, name=None):
135 dtype = x.dtype if dtype is None else dtype
136 return ivy.ones_like(x, dtype=dtype)
137
138
139 @to_ivy_arrays_and_back
140 def to_tensor(data, /, *, dtype=None, place=None, stop_gradient=True):
141 array = ivy.array(data, dtype=dtype, device=place)
142 return Tensor(array, dtype=dtype, place=place)
143
144
145 @with_unsupported_dtypes(
146 {
147 "2.5.1 and below": (
148 "uint8",
149 "int8",
150 "int16",
151 "float16",
152 "complex64",
153 "complex128",
154 "bool",
155 )
156 },
157 "paddle",
158 )
159 @to_ivy_arrays_and_back
160 def tril(x, diagonal=0, name=None):
161 return ivy.tril(x, k=diagonal)
162
163
164 @with_supported_dtypes({"2.5.1 and below": ("int32", "int64")}, "paddle")
165 @to_ivy_arrays_and_back
166 def tril_indices(row, col, offset=0, dtype="int64"):
167 arr = ivy.tril_indices(row, col, offset)
168 arr = ivy.astype(arr, dtype)
169 return arr
170
171
172 @with_unsupported_dtypes(
173 {
174 "2.5.1 and below": (
175 "uint8",
176 "int8",
177 "int16",
178 "float16",
179 "complex64",
180 "complex128",
181 "bool",
182 )
183 },
184 "paddle",
185 )
186 @to_ivy_arrays_and_back
187 def triu(x, diagonal=0, name=None):
188 return ivy.triu(x, k=diagonal)
189
190
191 @with_supported_dtypes({"2.5.1 and below": ("int32", "int64")}, "paddle")
192 @to_ivy_arrays_and_back
193 def triu_indices(row, col=None, offset=0, dtype="int64"):
194 arr = ivy.triu_indices(row, col, offset)
195 if not ivy.to_scalar(ivy.shape(arr[0], as_array=True)):
196 return arr
197 arr = ivy.astype(arr, dtype)
198 return arr
199
200
201 @with_unsupported_dtypes({"2.5.1 and below": "int8"}, "paddle")
202 @to_ivy_arrays_and_back
203 def zeros(shape, /, *, dtype=None, name=None):
204 dtype = "float32" if dtype is None else dtype
205 return ivy.zeros(shape, dtype=dtype)
206
207
208 @with_unsupported_dtypes(
209 {"2.5.1 and below": ("uint8", "int8", "complex64", "complex128")}, "paddle"
210 )
211 @to_ivy_arrays_and_back
212 def zeros_like(x, /, *, dtype=None, name=None):
213 dtype = x.dtype if dtype is None else dtype
214 return ivy.zeros_like(x, dtype=dtype)
215
[end of ivy/functional/frontends/paddle/tensor/creation.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/ivy/functional/frontends/paddle/tensor/creation.py b/ivy/functional/frontends/paddle/tensor/creation.py
--- a/ivy/functional/frontends/paddle/tensor/creation.py
+++ b/ivy/functional/frontends/paddle/tensor/creation.py
@@ -29,6 +29,14 @@
return ret
+@with_unsupported_dtypes(
+ {"2.5.1 and below": ("bfloat16", "uint16", "uint32", "uint64")}, "paddle"
+)
+@to_ivy_arrays_and_back
+def clone(x):
+ return ivy.copy_array(x)
+
+
@with_supported_dtypes(
{"2.5.1 and below": ("float32", "float64")},
"paddle",
| {"golden_diff": "diff --git a/ivy/functional/frontends/paddle/tensor/creation.py b/ivy/functional/frontends/paddle/tensor/creation.py\n--- a/ivy/functional/frontends/paddle/tensor/creation.py\n+++ b/ivy/functional/frontends/paddle/tensor/creation.py\n@@ -29,6 +29,14 @@\n return ret\n \n \n+@with_unsupported_dtypes(\n+ {\"2.5.1 and below\": (\"bfloat16\", \"uint16\", \"uint32\", \"uint64\")}, \"paddle\"\n+)\n+@to_ivy_arrays_and_back\n+def clone(x):\n+ return ivy.copy_array(x)\n+\n+\n @with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\")},\n \"paddle\",\n", "issue": "clone\n\n", "before_files": [{"content": "# global\nimport ivy\nfrom ivy.func_wrapper import with_unsupported_dtypes, with_supported_dtypes\nfrom .tensor import Tensor\nfrom ivy.functional.frontends.paddle.func_wrapper import (\n to_ivy_arrays_and_back,\n)\n\n\n@with_unsupported_dtypes({\"2.5.1 and below\": (\"float16\", \"bfloat16\")}, \"paddle\")\n@to_ivy_arrays_and_back\ndef arange(start, end=None, step=1, dtype=None, name=None):\n return ivy.arange(start, end, step=step, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float16\", \"float32\", \"float64\", \"int32\", \"int64\", \"bool\")},\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef assign(x, output=None):\n if len(ivy.shape(x)) == 0:\n x = ivy.reshape(ivy.Array(x), (1,))\n if ivy.exists(output):\n output = ivy.reshape(ivy.Array(output), (1,))\n else:\n x = ivy.reshape(x, ivy.shape(x))\n ret = ivy.copy_array(x, to_ivy_array=False, out=output)\n return ret\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\")},\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef complex(real, imag, name=None):\n assert real.dtype == imag.dtype, (\n \"(InvalidArgument) The type of data we are trying to retrieve does not match\"\n \" the type of data currently contained in the container.\"\n )\n complex_dtype = \"complex64\" if real.dtype == \"float32\" else \"complex128\"\n imag_cmplx = ivy.astype(imag, complex_dtype) * 1j\n complex_array = real + imag_cmplx\n return complex_array\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef diag(x, offset=0, padding_value=0, name=None):\n if len(x.shape) == 1:\n padding_value = ivy.astype(padding_value, ivy.dtype(x))\n ret = ivy.diagflat(x, offset=offset, padding_value=padding_value)\n if len(ret.shape) != 2:\n ret = ivy.reshape(ret, (1, 1))\n else:\n ret = ivy.diag(x, k=offset)\n return ret\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef diagflat(x, offset=0, name=None):\n arr = ivy.diagflat(x, offset=offset)\n return arr\n\n\n@to_ivy_arrays_and_back\ndef empty(shape, dtype=None):\n return ivy.empty(shape=shape, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef empty_like(x, dtype=None, name=None):\n return ivy.empty_like(x, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef eye(num_rows, num_columns=None, dtype=None, name=None):\n return ivy.eye(num_rows, num_columns, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef full(shape, fill_value, /, *, dtype=None, name=None):\n dtype = \"float32\" if dtype is None else dtype\n return ivy.full(shape, fill_value, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef full_like(x, fill_value, /, *, dtype=None, name=None):\n dtype = x.dtype if dtype is None else dtype\n return ivy.full_like(x, fill_value, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef linspace(start, stop, num, dtype=None, name=None):\n return ivy.linspace(start, stop, num=num, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef logspace(start, stop, num, base=10.0, dtype=None, name=None):\n return ivy.logspace(start, stop, num=num, base=base, dtype=dtype)\n\n\n@with_supported_dtypes(\n {\"2.5.1 and below\": (\"float32\", \"float64\", \"int32\", \"int64\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef meshgrid(*args, **kwargs):\n return ivy.meshgrid(*args, indexing=\"ij\")\n\n\n@with_unsupported_dtypes({\"2.5.1 and below\": \"int8\"}, \"paddle\")\n@to_ivy_arrays_and_back\ndef ones(shape, /, *, dtype=None, name=None):\n dtype = \"float32\" if dtype is None else dtype\n return ivy.ones(shape, dtype=dtype)\n\n\n@with_unsupported_dtypes(\n {\"2.5.1 and below\": (\"uint8\", \"int8\", \"complex64\", \"complex128\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef ones_like(x, /, *, dtype=None, name=None):\n dtype = x.dtype if dtype is None else dtype\n return ivy.ones_like(x, dtype=dtype)\n\n\n@to_ivy_arrays_and_back\ndef to_tensor(data, /, *, dtype=None, place=None, stop_gradient=True):\n array = ivy.array(data, dtype=dtype, device=place)\n return Tensor(array, dtype=dtype, place=place)\n\n\n@with_unsupported_dtypes(\n {\n \"2.5.1 and below\": (\n \"uint8\",\n \"int8\",\n \"int16\",\n \"float16\",\n \"complex64\",\n \"complex128\",\n \"bool\",\n )\n },\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef tril(x, diagonal=0, name=None):\n return ivy.tril(x, k=diagonal)\n\n\n@with_supported_dtypes({\"2.5.1 and below\": (\"int32\", \"int64\")}, \"paddle\")\n@to_ivy_arrays_and_back\ndef tril_indices(row, col, offset=0, dtype=\"int64\"):\n arr = ivy.tril_indices(row, col, offset)\n arr = ivy.astype(arr, dtype)\n return arr\n\n\n@with_unsupported_dtypes(\n {\n \"2.5.1 and below\": (\n \"uint8\",\n \"int8\",\n \"int16\",\n \"float16\",\n \"complex64\",\n \"complex128\",\n \"bool\",\n )\n },\n \"paddle\",\n)\n@to_ivy_arrays_and_back\ndef triu(x, diagonal=0, name=None):\n return ivy.triu(x, k=diagonal)\n\n\n@with_supported_dtypes({\"2.5.1 and below\": (\"int32\", \"int64\")}, \"paddle\")\n@to_ivy_arrays_and_back\ndef triu_indices(row, col=None, offset=0, dtype=\"int64\"):\n arr = ivy.triu_indices(row, col, offset)\n if not ivy.to_scalar(ivy.shape(arr[0], as_array=True)):\n return arr\n arr = ivy.astype(arr, dtype)\n return arr\n\n\n@with_unsupported_dtypes({\"2.5.1 and below\": \"int8\"}, \"paddle\")\n@to_ivy_arrays_and_back\ndef zeros(shape, /, *, dtype=None, name=None):\n dtype = \"float32\" if dtype is None else dtype\n return ivy.zeros(shape, dtype=dtype)\n\n\n@with_unsupported_dtypes(\n {\"2.5.1 and below\": (\"uint8\", \"int8\", \"complex64\", \"complex128\")}, \"paddle\"\n)\n@to_ivy_arrays_and_back\ndef zeros_like(x, /, *, dtype=None, name=None):\n dtype = x.dtype if dtype is None else dtype\n return ivy.zeros_like(x, dtype=dtype)\n", "path": "ivy/functional/frontends/paddle/tensor/creation.py"}]} | 3,001 | 185 |
gh_patches_debug_26784 | rasdani/github-patches | git_diff | mindee__doctr-1280 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
listing the detection and recognition models not working in pytorch
### Bug description
Hi,
This is the list of models not working in inference:
- detection models:
* db_resnet_34
* linknet_resnet18
* linknet_resnet34
* linknet_resnet50
for all these detection models in pytorch, the code inference works but it get to much segmentations/detected boxes.
- recognition models:
* sar_resnet31
* master
* vitstr_small
* vitstr_base
For all of these models in pytorch, the code inference seems to work, but it gets random character recognition. I think they are not correct loaded or trained.
### Code snippet to reproduce the bug
in doctr/demo/backend/pytorch.py file, changing this lines
```
DET_ARCHS = ["db_resnet50", "db_mobilenet_v3_large", "linknet_resnet50_rotation"]
RECO_ARCHS = ["crnn_vgg16_bn", "crnn_mobilenet_v3_small", "master", "sar_resnet31"]
```
by this lines
```
#DET_ARCHS = ["db_resnet50", "db_mobilenet_v3_large", "linknet_resnet50_rotation"]
DET_ARCHS = [ "db_resnet34",
"db_resnet50",
"db_mobilenet_v3_large",
"linknet_resnet18",
"linknet_resnet34",
"linknet_resnet50",
"db_resnet50_rotation"]
#RECO_ARCHS = ["crnn_vgg16_bn", "crnn_mobilenet_v3_small", "master", "sar_resnet31"]
RECO_ARCHS=[ "crnn_vgg16_bn",
"crnn_mobilenet_v3_small",
"crnn_mobilenet_v3_large",
"sar_resnet31",
"master",
"vitstr_small",
"vitstr_base"]
```
and running this code to try all the pytorch models
```
USE_TF=0 streamlit run demo/app.py
```
### Error traceback
not errors but bugs on models
### Environment
wget https://raw.githubusercontent.com/mindee/doctr/main/scripts/collect_env.py
# For security purposes, please check the contents of collect_env.py before running it.
python collect_env.py
### Deep Learning backend
from doctr.file_utils import is_tf_available, is_torch_available
print(f"is_tf_available: {is_tf_available()}")
print(f"is_torch_available: {is_torch_available()}")
</issue>
<code>
[start of demo/backend/tensorflow.py]
1 # Copyright (C) 2021-2023, Mindee.
2
3 # This program is licensed under the Apache License 2.0.
4 # See LICENSE or go to <https://opensource.org/licenses/Apache-2.0> for full license details.
5
6 import numpy as np
7 import tensorflow as tf
8
9 from doctr.models import ocr_predictor
10 from doctr.models.predictor import OCRPredictor
11
12 DET_ARCHS = ["db_resnet50", "db_mobilenet_v3_large", "linknet_resnet18_rotation"]
13 RECO_ARCHS = ["crnn_vgg16_bn", "crnn_mobilenet_v3_small", "master", "sar_resnet31"]
14
15
16 def load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:
17 """
18 Args:
19 device is tf.device
20 """
21 with device:
22 predictor = ocr_predictor(
23 det_arch, reco_arch, pretrained=True, assume_straight_pages=("rotation" not in det_arch)
24 )
25 return predictor
26
27
28 def forward_image(predictor: OCRPredictor, image: np.ndarray, device) -> np.ndarray:
29 """
30 Args:
31 device is tf.device
32 """
33 with device:
34 processed_batches = predictor.det_predictor.pre_processor([image])
35 out = predictor.det_predictor.model(processed_batches[0], return_model_output=True)
36 seg_map = out["out_map"]
37
38 with tf.device("/cpu:0"):
39 seg_map = tf.identity(seg_map).numpy()
40
41 return seg_map
42
[end of demo/backend/tensorflow.py]
[start of demo/backend/pytorch.py]
1 # Copyright (C) 2021-2023, Mindee.
2
3 # This program is licensed under the Apache License 2.0.
4 # See LICENSE or go to <https://opensource.org/licenses/Apache-2.0> for full license details.
5
6 import numpy as np
7 import torch
8
9 from doctr.models import ocr_predictor
10 from doctr.models.predictor import OCRPredictor
11
12 DET_ARCHS = ["db_resnet50", "db_mobilenet_v3_large", "linknet_resnet50_rotation"]
13 RECO_ARCHS = ["crnn_vgg16_bn", "crnn_mobilenet_v3_small", "master", "sar_resnet31"]
14
15
16 def load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:
17 """
18 Args:
19 device is torch.device
20 """
21 predictor = ocr_predictor(
22 det_arch, reco_arch, pretrained=True, assume_straight_pages=("rotation" not in det_arch)
23 ).to(device)
24 return predictor
25
26
27 def forward_image(predictor: OCRPredictor, image: np.ndarray, device) -> np.ndarray:
28 """
29 Args:
30 device is torch.device
31 """
32 with torch.no_grad():
33 processed_batches = predictor.det_predictor.pre_processor([image])
34 out = predictor.det_predictor.model(processed_batches[0].to(device), return_model_output=True)
35 seg_map = out["out_map"].to("cpu").numpy()
36
37 return seg_map
38
[end of demo/backend/pytorch.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/demo/backend/pytorch.py b/demo/backend/pytorch.py
--- a/demo/backend/pytorch.py
+++ b/demo/backend/pytorch.py
@@ -9,8 +9,25 @@
from doctr.models import ocr_predictor
from doctr.models.predictor import OCRPredictor
-DET_ARCHS = ["db_resnet50", "db_mobilenet_v3_large", "linknet_resnet50_rotation"]
-RECO_ARCHS = ["crnn_vgg16_bn", "crnn_mobilenet_v3_small", "master", "sar_resnet31"]
+DET_ARCHS = [
+ "db_resnet50",
+ "db_resnet34",
+ "db_mobilenet_v3_large",
+ "db_resnet50_rotation",
+ "linknet_resnet18",
+ "linknet_resnet34",
+ "linknet_resnet50",
+]
+RECO_ARCHS = [
+ "crnn_vgg16_bn",
+ "crnn_mobilenet_v3_small",
+ "crnn_mobilenet_v3_large",
+ "master",
+ "sar_resnet31",
+ "vitstr_small",
+ "vitstr_base",
+ "parseq",
+]
def load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:
diff --git a/demo/backend/tensorflow.py b/demo/backend/tensorflow.py
--- a/demo/backend/tensorflow.py
+++ b/demo/backend/tensorflow.py
@@ -9,8 +9,24 @@
from doctr.models import ocr_predictor
from doctr.models.predictor import OCRPredictor
-DET_ARCHS = ["db_resnet50", "db_mobilenet_v3_large", "linknet_resnet18_rotation"]
-RECO_ARCHS = ["crnn_vgg16_bn", "crnn_mobilenet_v3_small", "master", "sar_resnet31"]
+DET_ARCHS = [
+ "db_resnet50",
+ "db_mobilenet_v3_large",
+ "linknet_resnet18",
+ "linknet_resnet18_rotation",
+ "linknet_resnet34",
+ "linknet_resnet50",
+]
+RECO_ARCHS = [
+ "crnn_vgg16_bn",
+ "crnn_mobilenet_v3_small",
+ "crnn_mobilenet_v3_large",
+ "master",
+ "sar_resnet31",
+ "vitstr_small",
+ "vitstr_base",
+ "parseq",
+]
def load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:
| {"golden_diff": "diff --git a/demo/backend/pytorch.py b/demo/backend/pytorch.py\n--- a/demo/backend/pytorch.py\n+++ b/demo/backend/pytorch.py\n@@ -9,8 +9,25 @@\n from doctr.models import ocr_predictor\n from doctr.models.predictor import OCRPredictor\n \n-DET_ARCHS = [\"db_resnet50\", \"db_mobilenet_v3_large\", \"linknet_resnet50_rotation\"]\n-RECO_ARCHS = [\"crnn_vgg16_bn\", \"crnn_mobilenet_v3_small\", \"master\", \"sar_resnet31\"]\n+DET_ARCHS = [\n+ \"db_resnet50\",\n+ \"db_resnet34\",\n+ \"db_mobilenet_v3_large\",\n+ \"db_resnet50_rotation\",\n+ \"linknet_resnet18\",\n+ \"linknet_resnet34\",\n+ \"linknet_resnet50\",\n+]\n+RECO_ARCHS = [\n+ \"crnn_vgg16_bn\",\n+ \"crnn_mobilenet_v3_small\",\n+ \"crnn_mobilenet_v3_large\",\n+ \"master\",\n+ \"sar_resnet31\",\n+ \"vitstr_small\",\n+ \"vitstr_base\",\n+ \"parseq\",\n+]\n \n \n def load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:\ndiff --git a/demo/backend/tensorflow.py b/demo/backend/tensorflow.py\n--- a/demo/backend/tensorflow.py\n+++ b/demo/backend/tensorflow.py\n@@ -9,8 +9,24 @@\n from doctr.models import ocr_predictor\n from doctr.models.predictor import OCRPredictor\n \n-DET_ARCHS = [\"db_resnet50\", \"db_mobilenet_v3_large\", \"linknet_resnet18_rotation\"]\n-RECO_ARCHS = [\"crnn_vgg16_bn\", \"crnn_mobilenet_v3_small\", \"master\", \"sar_resnet31\"]\n+DET_ARCHS = [\n+ \"db_resnet50\",\n+ \"db_mobilenet_v3_large\",\n+ \"linknet_resnet18\",\n+ \"linknet_resnet18_rotation\",\n+ \"linknet_resnet34\",\n+ \"linknet_resnet50\",\n+]\n+RECO_ARCHS = [\n+ \"crnn_vgg16_bn\",\n+ \"crnn_mobilenet_v3_small\",\n+ \"crnn_mobilenet_v3_large\",\n+ \"master\",\n+ \"sar_resnet31\",\n+ \"vitstr_small\",\n+ \"vitstr_base\",\n+ \"parseq\",\n+]\n \n \n def load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:\n", "issue": "listing the detection and recognition models not working in pytorch\n### Bug description\r\n\r\nHi,\r\n\r\nThis is the list of models not working in inference:\r\n\r\n- detection models:\r\n * db_resnet_34\r\n * linknet_resnet18\r\n * linknet_resnet34\r\n * linknet_resnet50\r\nfor all these detection models in pytorch, the code inference works but it get to much segmentations/detected boxes. \r\n\r\n\r\n- recognition models:\r\n * sar_resnet31\r\n * master\r\n * vitstr_small\r\n * vitstr_base\r\nFor all of these models in pytorch, the code inference seems to work, but it gets random character recognition. I think they are not correct loaded or trained.\r\n\r\n\r\n### Code snippet to reproduce the bug\r\n\r\nin doctr/demo/backend/pytorch.py file, changing this lines\r\n```\r\nDET_ARCHS = [\"db_resnet50\", \"db_mobilenet_v3_large\", \"linknet_resnet50_rotation\"]\r\nRECO_ARCHS = [\"crnn_vgg16_bn\", \"crnn_mobilenet_v3_small\", \"master\", \"sar_resnet31\"]\r\n```\r\n\r\nby this lines \r\n```\r\n#DET_ARCHS = [\"db_resnet50\", \"db_mobilenet_v3_large\", \"linknet_resnet50_rotation\"]\r\nDET_ARCHS = [ \"db_resnet34\",\r\n \"db_resnet50\",\r\n \"db_mobilenet_v3_large\",\r\n \"linknet_resnet18\",\r\n \"linknet_resnet34\",\r\n \"linknet_resnet50\",\r\n \"db_resnet50_rotation\"]\r\n#RECO_ARCHS = [\"crnn_vgg16_bn\", \"crnn_mobilenet_v3_small\", \"master\", \"sar_resnet31\"]\r\nRECO_ARCHS=[ \"crnn_vgg16_bn\",\r\n \"crnn_mobilenet_v3_small\",\r\n \"crnn_mobilenet_v3_large\",\r\n \"sar_resnet31\",\r\n \"master\",\r\n \"vitstr_small\",\r\n \"vitstr_base\"]\r\n```\r\n\r\nand running this code to try all the pytorch models\r\n```\r\nUSE_TF=0 streamlit run demo/app.py\r\n```\r\n\r\n\r\n### Error traceback\r\n\r\nnot errors but bugs on models\r\n\r\n### Environment\r\n\r\nwget https://raw.githubusercontent.com/mindee/doctr/main/scripts/collect_env.py\r\n# For security purposes, please check the contents of collect_env.py before running it.\r\npython collect_env.py\r\n\r\n### Deep Learning backend\r\n\r\n from doctr.file_utils import is_tf_available, is_torch_available\r\n\r\nprint(f\"is_tf_available: {is_tf_available()}\")\r\nprint(f\"is_torch_available: {is_torch_available()}\")\n", "before_files": [{"content": "# Copyright (C) 2021-2023, Mindee.\n\n# This program is licensed under the Apache License 2.0.\n# See LICENSE or go to <https://opensource.org/licenses/Apache-2.0> for full license details.\n\nimport numpy as np\nimport tensorflow as tf\n\nfrom doctr.models import ocr_predictor\nfrom doctr.models.predictor import OCRPredictor\n\nDET_ARCHS = [\"db_resnet50\", \"db_mobilenet_v3_large\", \"linknet_resnet18_rotation\"]\nRECO_ARCHS = [\"crnn_vgg16_bn\", \"crnn_mobilenet_v3_small\", \"master\", \"sar_resnet31\"]\n\n\ndef load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:\n \"\"\"\n Args:\n device is tf.device\n \"\"\"\n with device:\n predictor = ocr_predictor(\n det_arch, reco_arch, pretrained=True, assume_straight_pages=(\"rotation\" not in det_arch)\n )\n return predictor\n\n\ndef forward_image(predictor: OCRPredictor, image: np.ndarray, device) -> np.ndarray:\n \"\"\"\n Args:\n device is tf.device\n \"\"\"\n with device:\n processed_batches = predictor.det_predictor.pre_processor([image])\n out = predictor.det_predictor.model(processed_batches[0], return_model_output=True)\n seg_map = out[\"out_map\"]\n\n with tf.device(\"/cpu:0\"):\n seg_map = tf.identity(seg_map).numpy()\n\n return seg_map\n", "path": "demo/backend/tensorflow.py"}, {"content": "# Copyright (C) 2021-2023, Mindee.\n\n# This program is licensed under the Apache License 2.0.\n# See LICENSE or go to <https://opensource.org/licenses/Apache-2.0> for full license details.\n\nimport numpy as np\nimport torch\n\nfrom doctr.models import ocr_predictor\nfrom doctr.models.predictor import OCRPredictor\n\nDET_ARCHS = [\"db_resnet50\", \"db_mobilenet_v3_large\", \"linknet_resnet50_rotation\"]\nRECO_ARCHS = [\"crnn_vgg16_bn\", \"crnn_mobilenet_v3_small\", \"master\", \"sar_resnet31\"]\n\n\ndef load_predictor(det_arch: str, reco_arch: str, device) -> OCRPredictor:\n \"\"\"\n Args:\n device is torch.device\n \"\"\"\n predictor = ocr_predictor(\n det_arch, reco_arch, pretrained=True, assume_straight_pages=(\"rotation\" not in det_arch)\n ).to(device)\n return predictor\n\n\ndef forward_image(predictor: OCRPredictor, image: np.ndarray, device) -> np.ndarray:\n \"\"\"\n Args:\n device is torch.device\n \"\"\"\n with torch.no_grad():\n processed_batches = predictor.det_predictor.pre_processor([image])\n out = predictor.det_predictor.model(processed_batches[0].to(device), return_model_output=True)\n seg_map = out[\"out_map\"].to(\"cpu\").numpy()\n\n return seg_map\n", "path": "demo/backend/pytorch.py"}]} | 1,931 | 604 |
gh_patches_debug_27265 | rasdani/github-patches | git_diff | deis__deis-108 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
500 errors should log stack trace by default
Running Django with DEBUG=True is too verbose (and bad practice), but we need to see errors when they occur.
See issue #77.
</issue>
<code>
[start of deis/settings.py]
1 """
2 Django settings for the Deis project.
3 """
4
5 from __future__ import unicode_literals
6 import os.path
7
8
9 PROJECT_ROOT = os.path.normpath(os.path.join(os.path.dirname(__file__), '..'))
10
11 DEBUG = False
12 TEMPLATE_DEBUG = DEBUG
13
14 ADMINS = (
15 # ('Your Name', '[email protected]'),
16 )
17
18 MANAGERS = ADMINS
19
20 DATABASES = {
21 'default': {
22 'ENGINE': 'django.db.backends.',
23 'NAME': '',
24 'USER': '',
25 'PASSWORD': '',
26 'HOST': '',
27 'PORT': '',
28 }
29 }
30
31 # Hosts/domain names that are valid for this site; required if DEBUG is False
32 # See https://docs.djangoproject.com/en/1.5/ref/settings/#allowed-hosts
33 ALLOWED_HOSTS = ['localhost']
34
35 # Local time zone for this installation. Choices can be found here:
36 # http://en.wikipedia.org/wiki/List_of_tz_zones_by_name
37 # although not all choices may be available on all operating systems.
38 # In a Windows environment this must be set to your system time zone.
39 TIME_ZONE = 'America/Denver'
40
41 # Language code for this installation. All choices can be found here:
42 # http://www.i18nguy.com/unicode/language-identifiers.html
43 LANGUAGE_CODE = 'en-us'
44
45 SITE_ID = 1
46
47 # If you set this to False, Django will make some optimizations so as not
48 # to load the internationalization machinery.
49 USE_I18N = True
50
51 # If you set this to False, Django will not format dates, numbers and
52 # calendars according to the current locale.
53 USE_L10N = True
54
55 # If you set this to False, Django will not use timezone-aware datetimes.
56 USE_TZ = True
57
58 # Absolute filesystem path to the directory that will hold user-uploaded files.
59 # Example: "/var/www/example.com/media/"
60 MEDIA_ROOT = ''
61
62 # URL that handles the media served from MEDIA_ROOT. Make sure to use a
63 # trailing slash.
64 # Examples: "http://example.com/media/", "http://media.example.com/"
65 MEDIA_URL = ''
66
67 # Absolute path to the directory static files should be collected to.
68 # Don't put anything in this directory yourself; store your static files
69 # in apps' "static/" subdirectories and in STATICFILES_DIRS.
70 # Example: "/var/www/example.com/static/"
71 STATIC_ROOT = os.path.abspath(os.path.join(__file__, '..', '..', 'static'))
72
73 # URL prefix for static files.
74 # Example: "http://example.com/static/", "http://static.example.com/"
75 STATIC_URL = '/static/'
76
77 # Additional locations of static files
78 STATICFILES_DIRS = (
79 # Put strings here, like "/home/html/static" or "C:/www/django/static".
80 # Always use forward slashes, even on Windows.
81 # Don't forget to use absolute paths, not relative paths.
82 )
83
84 # List of finder classes that know how to find static files in
85 # various locations.
86 STATICFILES_FINDERS = (
87 'django.contrib.staticfiles.finders.FileSystemFinder',
88 'django.contrib.staticfiles.finders.AppDirectoriesFinder',
89 )
90
91 # Make this unique, and don't share it with anybody.
92 SECRET_KEY = None # @UnusedVariable
93
94 # List of callables that know how to import templates from various sources.
95 TEMPLATE_LOADERS = (
96 'django.template.loaders.filesystem.Loader',
97 'django.template.loaders.app_directories.Loader',
98 )
99
100 TEMPLATE_CONTEXT_PROCESSORS = (
101 "django.contrib.auth.context_processors.auth",
102 "django.core.context_processors.debug",
103 "django.core.context_processors.i18n",
104 "django.core.context_processors.media",
105 "django.core.context_processors.request",
106 "django.core.context_processors.static",
107 "django.core.context_processors.tz",
108 "django.contrib.messages.context_processors.messages",
109 "allauth.account.context_processors.account",
110 "allauth.socialaccount.context_processors.socialaccount",
111 )
112
113 MIDDLEWARE_CLASSES = (
114 'django.middleware.common.CommonMiddleware',
115 'django.contrib.sessions.middleware.SessionMiddleware',
116 'django.middleware.csrf.CsrfViewMiddleware',
117 'django.contrib.auth.middleware.AuthenticationMiddleware',
118 'django.contrib.messages.middleware.MessageMiddleware',
119 # Uncomment the next line for simple clickjacking protection:
120 # 'django.middleware.clickjacking.XFrameOptionsMiddleware',
121 )
122
123 ROOT_URLCONF = 'deis.urls'
124
125 # Python dotted path to the WSGI application used by Django's runserver.
126 WSGI_APPLICATION = 'deis.wsgi.application'
127
128 TEMPLATE_DIRS = (
129 # Put strings here, like "/home/html/django_templates"
130 # or "C:/www/django/templates".
131 # Always use forward slashes, even on Windows.
132 # Don't forget to use absolute paths, not relative paths.
133 PROJECT_ROOT + '/web/templates',
134 )
135
136 INSTALLED_APPS = (
137 'django.contrib.admin',
138 'django.contrib.auth',
139 'django.contrib.contenttypes',
140 'django.contrib.messages',
141 'django.contrib.sessions',
142 'django.contrib.sites',
143 'django.contrib.staticfiles',
144 # Third-party apps
145 'allauth',
146 'allauth.account',
147 'allauth.socialaccount',
148 'djcelery',
149 'json_field',
150 'rest_framework',
151 'south',
152 # Deis apps
153 'api',
154 'celerytasks',
155 'client',
156 'web',
157 )
158
159 AUTHENTICATION_BACKENDS = (
160 # Needed to login by username in Django admin, regardless of `allauth`
161 "django.contrib.auth.backends.ModelBackend",
162 # `allauth` specific authentication methods, such as login by e-mail
163 "allauth.account.auth_backends.AuthenticationBackend",
164 )
165
166 ACCOUNT_EMAIL_REQUIRED = True
167 ACCOUNT_EMAIL_VERIFICATION = 'none'
168 ACCOUNT_LOGOUT_ON_GET = True
169 ACCOUNT_USERNAME_BLACKLIST = ['system']
170 LOGIN_REDIRECT_URL = '/dashboard/'
171
172
173 SOUTH_TESTS_MIGRATE = False
174
175 REST_FRAMEWORK = {
176 'DEFAULT_MODEL_SERIALIZER_CLASS':
177 'rest_framework.serializers.ModelSerializer',
178 'DEFAULT_PERMISSION_CLASSES': (
179 'rest_framework.permissions.IsAuthenticated',
180 ),
181 'DEFAULT_AUTHENTICATION_CLASSES': (
182 'rest_framework.authentication.SessionAuthentication',
183 ),
184 'PAGINATE_BY': 100,
185 }
186
187 # URLs that end with slashes are ugly
188 APPEND_SLASH = False
189
190 # A sample logging configuration. The only tangible logging
191 # performed by this configuration is to send an email to
192 # the site admins on every HTTP 500 error when DEBUG=False.
193 # See http://docs.djangoproject.com/en/dev/topics/logging for
194 # more details on how to customize your logging configuration.
195 LOGGING = {
196 'version': 1,
197 'disable_existing_loggers': False,
198 'filters': {
199 'require_debug_false': {
200 '()': 'django.utils.log.RequireDebugFalse'
201 }
202 },
203 'handlers': {
204 'mail_admins': {
205 'level': 'ERROR',
206 'filters': ['require_debug_false'],
207 'class': 'django.utils.log.AdminEmailHandler'
208 }
209 },
210 'loggers': {
211 'django.request': {
212 'handlers': ['mail_admins'],
213 'level': 'ERROR',
214 'propagate': True,
215 },
216 }
217 }
218
219 # import deis-specific settings files
220 from .chef_settings import * # @UnusedWildImport # noqa
221 from .celery_settings import * # @UnusedWildImport # noqa
222
223 # default deis settings
224 CONVERGE_ON_PUSH = True
225 DEIS_LOG_DIR = os.path.abspath(os.path.join(__file__, '..', '..', 'logs'))
226 LOG_LINES = 1000
227
228 # Create a file named "local_settings.py" to contain sensitive settings data
229 # such as database configuration, admin email, or passwords and keys. It
230 # should also be used for any settings which differ between development
231 # and production.
232 # The local_settings.py file should *not* be checked in to version control.
233 # A local_setings.py configured for development might look like this:
234 #
235 # DEBUG = TEMPLATE_DEBUG = True
236 # ADMINS = (
237 # ('Abraham Lincoln', '[email protected]'),
238 # ('George Washington', '[email protected]'),
239 # )
240 # DATABASES = {
241 # 'default': {
242 # 'ENGINE': 'django.db.backends.sqlite3',
243 # 'NAME': 'deis.db',
244 # 'USER': '',
245 # 'PASSWORD': '',
246 # 'HOST': '',
247 # 'PORT': '',
248 # }
249 # }
250 # SECRET_KEY = 'CHANGEME_sapm$s%upvsw5l_zuy_&29rkywd^78ff(qilmw1#g'
251 # EMAIL_HOST = 'smtp.sendgrid.com'
252 # EMAIL_PORT = 587
253 # EMAIL_HOST_USER = 'foo'
254 # EMAIL_HOST_PASSWORD = 'bar'
255
256
257 try:
258 from .local_settings import * # @UnusedWildImport # noqa
259 except ImportError:
260 print('\033[96mdeis/local_settings.py \033[91mfile not found!\033[0m')
261
[end of deis/settings.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/deis/settings.py b/deis/settings.py
--- a/deis/settings.py
+++ b/deis/settings.py
@@ -195,12 +195,29 @@
LOGGING = {
'version': 1,
'disable_existing_loggers': False,
+ 'formatters': {
+ 'verbose': {
+ 'format': '%(levelname)s %(asctime)s %(module)s %(process)d %(thread)d %(message)s'
+ },
+ 'simple': {
+ 'format': '%(levelname)s %(message)s'
+ },
+ },
'filters': {
'require_debug_false': {
'()': 'django.utils.log.RequireDebugFalse'
}
},
'handlers': {
+ 'null': {
+ 'level': 'DEBUG',
+ 'class': 'logging.NullHandler',
+ },
+ 'console': {
+ 'level': 'DEBUG',
+ 'class': 'logging.StreamHandler',
+ 'formatter': 'simple'
+ },
'mail_admins': {
'level': 'ERROR',
'filters': ['require_debug_false'],
@@ -208,9 +225,19 @@
}
},
'loggers': {
+ 'django': {
+ 'handlers': ['null'],
+ 'propagate': True,
+ 'level': 'INFO',
+ },
'django.request': {
- 'handlers': ['mail_admins'],
- 'level': 'ERROR',
+ 'handlers': ['console', 'mail_admins'],
+ 'level': 'WARNING',
+ 'propagate': True,
+ },
+ 'api': {
+ 'handlers': ['console', 'mail_admins'],
+ 'level': 'INFO',
'propagate': True,
},
}
| {"golden_diff": "diff --git a/deis/settings.py b/deis/settings.py\n--- a/deis/settings.py\n+++ b/deis/settings.py\n@@ -195,12 +195,29 @@\n LOGGING = {\n 'version': 1,\n 'disable_existing_loggers': False,\n+ 'formatters': {\n+ 'verbose': {\n+ 'format': '%(levelname)s %(asctime)s %(module)s %(process)d %(thread)d %(message)s'\n+ },\n+ 'simple': {\n+ 'format': '%(levelname)s %(message)s'\n+ },\n+ },\n 'filters': {\n 'require_debug_false': {\n '()': 'django.utils.log.RequireDebugFalse'\n }\n },\n 'handlers': {\n+ 'null': {\n+ 'level': 'DEBUG',\n+ 'class': 'logging.NullHandler',\n+ },\n+ 'console': {\n+ 'level': 'DEBUG',\n+ 'class': 'logging.StreamHandler',\n+ 'formatter': 'simple'\n+ },\n 'mail_admins': {\n 'level': 'ERROR',\n 'filters': ['require_debug_false'],\n@@ -208,9 +225,19 @@\n }\n },\n 'loggers': {\n+ 'django': {\n+ 'handlers': ['null'],\n+ 'propagate': True,\n+ 'level': 'INFO',\n+ },\n 'django.request': {\n- 'handlers': ['mail_admins'],\n- 'level': 'ERROR',\n+ 'handlers': ['console', 'mail_admins'],\n+ 'level': 'WARNING',\n+ 'propagate': True,\n+ },\n+ 'api': {\n+ 'handlers': ['console', 'mail_admins'],\n+ 'level': 'INFO',\n 'propagate': True,\n },\n }\n", "issue": "500 errors should log stack trace by default\nRunning Django with DEBUG=True is too verbose (and bad practice), but we need to see errors when they occur.\n\nSee issue #77. \n\n", "before_files": [{"content": "\"\"\"\nDjango settings for the Deis project.\n\"\"\"\n\nfrom __future__ import unicode_literals\nimport os.path\n\n\nPROJECT_ROOT = os.path.normpath(os.path.join(os.path.dirname(__file__), '..'))\n\nDEBUG = False\nTEMPLATE_DEBUG = DEBUG\n\nADMINS = (\n # ('Your Name', '[email protected]'),\n)\n\nMANAGERS = ADMINS\n\nDATABASES = {\n 'default': {\n 'ENGINE': 'django.db.backends.',\n 'NAME': '',\n 'USER': '',\n 'PASSWORD': '',\n 'HOST': '',\n 'PORT': '',\n }\n}\n\n# Hosts/domain names that are valid for this site; required if DEBUG is False\n# See https://docs.djangoproject.com/en/1.5/ref/settings/#allowed-hosts\nALLOWED_HOSTS = ['localhost']\n\n# Local time zone for this installation. Choices can be found here:\n# http://en.wikipedia.org/wiki/List_of_tz_zones_by_name\n# although not all choices may be available on all operating systems.\n# In a Windows environment this must be set to your system time zone.\nTIME_ZONE = 'America/Denver'\n\n# Language code for this installation. All choices can be found here:\n# http://www.i18nguy.com/unicode/language-identifiers.html\nLANGUAGE_CODE = 'en-us'\n\nSITE_ID = 1\n\n# If you set this to False, Django will make some optimizations so as not\n# to load the internationalization machinery.\nUSE_I18N = True\n\n# If you set this to False, Django will not format dates, numbers and\n# calendars according to the current locale.\nUSE_L10N = True\n\n# If you set this to False, Django will not use timezone-aware datetimes.\nUSE_TZ = True\n\n# Absolute filesystem path to the directory that will hold user-uploaded files.\n# Example: \"/var/www/example.com/media/\"\nMEDIA_ROOT = ''\n\n# URL that handles the media served from MEDIA_ROOT. Make sure to use a\n# trailing slash.\n# Examples: \"http://example.com/media/\", \"http://media.example.com/\"\nMEDIA_URL = ''\n\n# Absolute path to the directory static files should be collected to.\n# Don't put anything in this directory yourself; store your static files\n# in apps' \"static/\" subdirectories and in STATICFILES_DIRS.\n# Example: \"/var/www/example.com/static/\"\nSTATIC_ROOT = os.path.abspath(os.path.join(__file__, '..', '..', 'static'))\n\n# URL prefix for static files.\n# Example: \"http://example.com/static/\", \"http://static.example.com/\"\nSTATIC_URL = '/static/'\n\n# Additional locations of static files\nSTATICFILES_DIRS = (\n # Put strings here, like \"/home/html/static\" or \"C:/www/django/static\".\n # Always use forward slashes, even on Windows.\n # Don't forget to use absolute paths, not relative paths.\n)\n\n# List of finder classes that know how to find static files in\n# various locations.\nSTATICFILES_FINDERS = (\n 'django.contrib.staticfiles.finders.FileSystemFinder',\n 'django.contrib.staticfiles.finders.AppDirectoriesFinder',\n)\n\n# Make this unique, and don't share it with anybody.\nSECRET_KEY = None # @UnusedVariable\n\n# List of callables that know how to import templates from various sources.\nTEMPLATE_LOADERS = (\n 'django.template.loaders.filesystem.Loader',\n 'django.template.loaders.app_directories.Loader',\n)\n\nTEMPLATE_CONTEXT_PROCESSORS = (\n \"django.contrib.auth.context_processors.auth\",\n \"django.core.context_processors.debug\",\n \"django.core.context_processors.i18n\",\n \"django.core.context_processors.media\",\n \"django.core.context_processors.request\",\n \"django.core.context_processors.static\",\n \"django.core.context_processors.tz\",\n \"django.contrib.messages.context_processors.messages\",\n \"allauth.account.context_processors.account\",\n \"allauth.socialaccount.context_processors.socialaccount\",\n)\n\nMIDDLEWARE_CLASSES = (\n 'django.middleware.common.CommonMiddleware',\n 'django.contrib.sessions.middleware.SessionMiddleware',\n 'django.middleware.csrf.CsrfViewMiddleware',\n 'django.contrib.auth.middleware.AuthenticationMiddleware',\n 'django.contrib.messages.middleware.MessageMiddleware',\n # Uncomment the next line for simple clickjacking protection:\n # 'django.middleware.clickjacking.XFrameOptionsMiddleware',\n)\n\nROOT_URLCONF = 'deis.urls'\n\n# Python dotted path to the WSGI application used by Django's runserver.\nWSGI_APPLICATION = 'deis.wsgi.application'\n\nTEMPLATE_DIRS = (\n # Put strings here, like \"/home/html/django_templates\"\n # or \"C:/www/django/templates\".\n # Always use forward slashes, even on Windows.\n # Don't forget to use absolute paths, not relative paths.\n PROJECT_ROOT + '/web/templates',\n)\n\nINSTALLED_APPS = (\n 'django.contrib.admin',\n 'django.contrib.auth',\n 'django.contrib.contenttypes',\n 'django.contrib.messages',\n 'django.contrib.sessions',\n 'django.contrib.sites',\n 'django.contrib.staticfiles',\n # Third-party apps\n 'allauth',\n 'allauth.account',\n 'allauth.socialaccount',\n 'djcelery',\n 'json_field',\n 'rest_framework',\n 'south',\n # Deis apps\n 'api',\n 'celerytasks',\n 'client',\n 'web',\n)\n\nAUTHENTICATION_BACKENDS = (\n # Needed to login by username in Django admin, regardless of `allauth`\n \"django.contrib.auth.backends.ModelBackend\",\n # `allauth` specific authentication methods, such as login by e-mail\n \"allauth.account.auth_backends.AuthenticationBackend\",\n)\n\nACCOUNT_EMAIL_REQUIRED = True\nACCOUNT_EMAIL_VERIFICATION = 'none'\nACCOUNT_LOGOUT_ON_GET = True\nACCOUNT_USERNAME_BLACKLIST = ['system']\nLOGIN_REDIRECT_URL = '/dashboard/'\n\n\nSOUTH_TESTS_MIGRATE = False\n\nREST_FRAMEWORK = {\n 'DEFAULT_MODEL_SERIALIZER_CLASS':\n 'rest_framework.serializers.ModelSerializer',\n 'DEFAULT_PERMISSION_CLASSES': (\n 'rest_framework.permissions.IsAuthenticated',\n ),\n 'DEFAULT_AUTHENTICATION_CLASSES': (\n 'rest_framework.authentication.SessionAuthentication',\n ),\n 'PAGINATE_BY': 100,\n}\n\n# URLs that end with slashes are ugly\nAPPEND_SLASH = False\n\n# A sample logging configuration. The only tangible logging\n# performed by this configuration is to send an email to\n# the site admins on every HTTP 500 error when DEBUG=False.\n# See http://docs.djangoproject.com/en/dev/topics/logging for\n# more details on how to customize your logging configuration.\nLOGGING = {\n 'version': 1,\n 'disable_existing_loggers': False,\n 'filters': {\n 'require_debug_false': {\n '()': 'django.utils.log.RequireDebugFalse'\n }\n },\n 'handlers': {\n 'mail_admins': {\n 'level': 'ERROR',\n 'filters': ['require_debug_false'],\n 'class': 'django.utils.log.AdminEmailHandler'\n }\n },\n 'loggers': {\n 'django.request': {\n 'handlers': ['mail_admins'],\n 'level': 'ERROR',\n 'propagate': True,\n },\n }\n}\n\n# import deis-specific settings files\nfrom .chef_settings import * # @UnusedWildImport # noqa\nfrom .celery_settings import * # @UnusedWildImport # noqa\n\n# default deis settings\nCONVERGE_ON_PUSH = True\nDEIS_LOG_DIR = os.path.abspath(os.path.join(__file__, '..', '..', 'logs'))\nLOG_LINES = 1000\n\n# Create a file named \"local_settings.py\" to contain sensitive settings data\n# such as database configuration, admin email, or passwords and keys. It\n# should also be used for any settings which differ between development\n# and production.\n# The local_settings.py file should *not* be checked in to version control.\n# A local_setings.py configured for development might look like this:\n#\n# DEBUG = TEMPLATE_DEBUG = True\n# ADMINS = (\n# ('Abraham Lincoln', '[email protected]'),\n# ('George Washington', '[email protected]'),\n# )\n# DATABASES = {\n# 'default': {\n# 'ENGINE': 'django.db.backends.sqlite3',\n# 'NAME': 'deis.db',\n# 'USER': '',\n# 'PASSWORD': '',\n# 'HOST': '',\n# 'PORT': '',\n# }\n# }\n# SECRET_KEY = 'CHANGEME_sapm$s%upvsw5l_zuy_&29rkywd^78ff(qilmw1#g'\n# EMAIL_HOST = 'smtp.sendgrid.com'\n# EMAIL_PORT = 587\n# EMAIL_HOST_USER = 'foo'\n# EMAIL_HOST_PASSWORD = 'bar'\n\n\ntry:\n from .local_settings import * # @UnusedWildImport # noqa\nexcept ImportError:\n print('\\033[96mdeis/local_settings.py \\033[91mfile not found!\\033[0m')\n", "path": "deis/settings.py"}]} | 3,171 | 400 |
gh_patches_debug_26097 | rasdani/github-patches | git_diff | cloud-custodian__cloud-custodian-3709 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
eks update action
https://docs.aws.amazon.com/eks/latest/userguide/cluster-endpoint.html
</issue>
<code>
[start of c7n/resources/eks.py]
1 # Copyright 2018 Capital One Services, LLC
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License");
4 # you may not use this file except in compliance with the License.
5 # You may obtain a copy of the License at
6 #
7 # http://www.apache.org/licenses/LICENSE-2.0
8 #
9 # Unless required by applicable law or agreed to in writing, software
10 # distributed under the License is distributed on an "AS IS" BASIS,
11 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12 # See the License for the specific language governing permissions and
13 # limitations under the License.
14 from __future__ import absolute_import, division, print_function, unicode_literals
15
16 from c7n.actions import Action
17 from c7n.filters.vpc import SecurityGroupFilter, SubnetFilter, VpcFilter
18 from c7n.manager import resources
19 from c7n.query import QueryResourceManager
20 from c7n.utils import local_session, type_schema
21
22
23 @resources.register('eks')
24 class EKS(QueryResourceManager):
25
26 class resource_type(object):
27 service = 'eks'
28 enum_spec = ('list_clusters', 'clusters', None)
29 arn = 'arn'
30 detail_spec = ('describe_cluster', 'name', None, 'cluster')
31 id = name = 'name'
32 date = 'createdAt'
33 dimension = None
34 filter_name = None
35
36
37 @EKS.filter_registry.register('subnet')
38 class EKSSubnetFilter(SubnetFilter):
39
40 RelatedIdsExpression = "resourcesVpcConfig.subnetIds[]"
41
42
43 @EKS.filter_registry.register('security-group')
44 class EKSSGFilter(SecurityGroupFilter):
45
46 RelatedIdsExpression = "resourcesVpcConfig.securityGroupIds[]"
47
48
49 @EKS.filter_registry.register('vpc')
50 class EKSVpcFilter(VpcFilter):
51
52 RelatedIdsExpression = 'resourcesVpcConfig.vpcId'
53
54
55 @EKS.action_registry.register('delete')
56 class Delete(Action):
57
58 schema = type_schema('delete')
59 permissions = ('eks:DeleteCluster',)
60
61 def process(self, resources):
62 client = local_session(self.manager.session_factory).client('eks')
63 for r in resources:
64 try:
65 client.delete_cluster(name=r['name'])
66 except client.exceptions.ResourceNotFoundException:
67 continue
68
[end of c7n/resources/eks.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/c7n/resources/eks.py b/c7n/resources/eks.py
--- a/c7n/resources/eks.py
+++ b/c7n/resources/eks.py
@@ -19,6 +19,8 @@
from c7n.query import QueryResourceManager
from c7n.utils import local_session, type_schema
+from .aws import shape_validate
+
@resources.register('eks')
class EKS(QueryResourceManager):
@@ -52,6 +54,37 @@
RelatedIdsExpression = 'resourcesVpcConfig.vpcId'
[email protected]_registry.register('update-config')
+class UpdateConfig(Action):
+
+ schema = type_schema(
+ 'update-config', resourcesVpcConfig={'type': 'object'},
+ required=('resourcesVpcConfig',))
+ permissions = ('eks:UpdateClusterConfig',)
+ shape = 'UpdateClusterConfigRequest'
+
+ def validate(self):
+ cfg = dict(self.data)
+ cfg['name'] = 'validate'
+ cfg.pop('type')
+ return shape_validate(
+ cfg, self.shape, self.manager.resource_type.service)
+
+ def process(self, resources):
+ client = local_session(self.manager.session_factory).client('eks')
+ state_filtered = 0
+ for r in resources:
+ if r['status'] != 'ACTIVE':
+ state_filtered += 1
+ continue
+ client.update_cluster_config(
+ name=r['name'],
+ resourcesVpcConfig=self.data['resourcesVpcConfig'])
+ if state_filtered:
+ self.log.warning(
+ "Filtered %d of %d clusters due to state", state_filtered, len(resources))
+
+
@EKS.action_registry.register('delete')
class Delete(Action):
| {"golden_diff": "diff --git a/c7n/resources/eks.py b/c7n/resources/eks.py\n--- a/c7n/resources/eks.py\n+++ b/c7n/resources/eks.py\n@@ -19,6 +19,8 @@\n from c7n.query import QueryResourceManager\n from c7n.utils import local_session, type_schema\n \n+from .aws import shape_validate\n+\n \n @resources.register('eks')\n class EKS(QueryResourceManager):\n@@ -52,6 +54,37 @@\n RelatedIdsExpression = 'resourcesVpcConfig.vpcId'\n \n \[email protected]_registry.register('update-config')\n+class UpdateConfig(Action):\n+\n+ schema = type_schema(\n+ 'update-config', resourcesVpcConfig={'type': 'object'},\n+ required=('resourcesVpcConfig',))\n+ permissions = ('eks:UpdateClusterConfig',)\n+ shape = 'UpdateClusterConfigRequest'\n+\n+ def validate(self):\n+ cfg = dict(self.data)\n+ cfg['name'] = 'validate'\n+ cfg.pop('type')\n+ return shape_validate(\n+ cfg, self.shape, self.manager.resource_type.service)\n+\n+ def process(self, resources):\n+ client = local_session(self.manager.session_factory).client('eks')\n+ state_filtered = 0\n+ for r in resources:\n+ if r['status'] != 'ACTIVE':\n+ state_filtered += 1\n+ continue\n+ client.update_cluster_config(\n+ name=r['name'],\n+ resourcesVpcConfig=self.data['resourcesVpcConfig'])\n+ if state_filtered:\n+ self.log.warning(\n+ \"Filtered %d of %d clusters due to state\", state_filtered, len(resources))\n+\n+\n @EKS.action_registry.register('delete')\n class Delete(Action):\n", "issue": "eks update action\nhttps://docs.aws.amazon.com/eks/latest/userguide/cluster-endpoint.html\n", "before_files": [{"content": "# Copyright 2018 Capital One Services, LLC\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\nfrom __future__ import absolute_import, division, print_function, unicode_literals\n\nfrom c7n.actions import Action\nfrom c7n.filters.vpc import SecurityGroupFilter, SubnetFilter, VpcFilter\nfrom c7n.manager import resources\nfrom c7n.query import QueryResourceManager\nfrom c7n.utils import local_session, type_schema\n\n\[email protected]('eks')\nclass EKS(QueryResourceManager):\n\n class resource_type(object):\n service = 'eks'\n enum_spec = ('list_clusters', 'clusters', None)\n arn = 'arn'\n detail_spec = ('describe_cluster', 'name', None, 'cluster')\n id = name = 'name'\n date = 'createdAt'\n dimension = None\n filter_name = None\n\n\[email protected]_registry.register('subnet')\nclass EKSSubnetFilter(SubnetFilter):\n\n RelatedIdsExpression = \"resourcesVpcConfig.subnetIds[]\"\n\n\[email protected]_registry.register('security-group')\nclass EKSSGFilter(SecurityGroupFilter):\n\n RelatedIdsExpression = \"resourcesVpcConfig.securityGroupIds[]\"\n\n\[email protected]_registry.register('vpc')\nclass EKSVpcFilter(VpcFilter):\n\n RelatedIdsExpression = 'resourcesVpcConfig.vpcId'\n\n\[email protected]_registry.register('delete')\nclass Delete(Action):\n\n schema = type_schema('delete')\n permissions = ('eks:DeleteCluster',)\n\n def process(self, resources):\n client = local_session(self.manager.session_factory).client('eks')\n for r in resources:\n try:\n client.delete_cluster(name=r['name'])\n except client.exceptions.ResourceNotFoundException:\n continue\n", "path": "c7n/resources/eks.py"}]} | 1,178 | 383 |
gh_patches_debug_36103 | rasdani/github-patches | git_diff | bokeh__bokeh-6504 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Add synthetic data mode to spectrogram
The pyaudio package is not available on all platforms. An option mode to generate synthetic dat would allow the app to be run everywhere in some capacity.
@philippjfr I think you might already have some code that could be re-used?
</issue>
<code>
[start of examples/app/spectrogram/audio.py]
1 from __future__ import print_function
2
3 try:
4 import pyaudio
5 except:
6 print("This demo requires pyaudio installed to function")
7 import sys
8 sys.exit(1)
9
10 import numpy as np
11 import scipy as sp
12 from scipy.integrate import simps
13
14 NUM_SAMPLES = 1024
15 SAMPLING_RATE = 44100
16 MAX_FREQ = SAMPLING_RATE / 2
17 FREQ_SAMPLES = NUM_SAMPLES / 8
18 TIMESLICE = 100 # ms
19 NUM_BINS = 16
20
21 data = {'values': None}
22
23 def _get_audio_data():
24 pa = pyaudio.PyAudio()
25 stream = pa.open(
26 format=pyaudio.paInt16,
27 channels=1,
28 rate=SAMPLING_RATE,
29 input=True,
30 frames_per_buffer=NUM_SAMPLES
31 )
32
33 while True:
34 try:
35 raw_data = np.fromstring(stream.read(NUM_SAMPLES), dtype=np.int16)
36 signal = raw_data / 32768.0
37 fft = sp.fft(signal)
38 spectrum = abs(fft)[:NUM_SAMPLES/2]
39 power = spectrum**2
40 bins = simps(np.split(power, NUM_BINS))
41 data['values'] = signal, spectrum, bins
42 except:
43 continue
44
[end of examples/app/spectrogram/audio.py]
[start of examples/app/spectrogram/server_lifecycle.py]
1 from threading import Thread
2
3 import audio
4
5 def on_server_loaded(server_context):
6 t = Thread(target=audio._get_audio_data, args=())
7 t.setDaemon(True)
8 t.start()
9
[end of examples/app/spectrogram/server_lifecycle.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/examples/app/spectrogram/audio.py b/examples/app/spectrogram/audio.py
--- a/examples/app/spectrogram/audio.py
+++ b/examples/app/spectrogram/audio.py
@@ -1,11 +1,6 @@
from __future__ import print_function
-try:
- import pyaudio
-except:
- print("This demo requires pyaudio installed to function")
- import sys
- sys.exit(1)
+from time import sleep
import numpy as np
import scipy as sp
@@ -20,24 +15,51 @@
data = {'values': None}
-def _get_audio_data():
- pa = pyaudio.PyAudio()
- stream = pa.open(
- format=pyaudio.paInt16,
- channels=1,
- rate=SAMPLING_RATE,
- input=True,
- frames_per_buffer=NUM_SAMPLES
- )
-
- while True:
- try:
- raw_data = np.fromstring(stream.read(NUM_SAMPLES), dtype=np.int16)
- signal = raw_data / 32768.0
+try:
+ import pyaudio
+
+ def update_audio_data():
+ pa = pyaudio.PyAudio()
+ stream = pa.open(
+ format=pyaudio.paInt16,
+ channels=1,
+ rate=SAMPLING_RATE,
+ input=True,
+ frames_per_buffer=NUM_SAMPLES
+ )
+
+ while True:
+ try:
+ raw_data = np.fromstring(stream.read(NUM_SAMPLES), dtype=np.int16)
+ signal = raw_data / 32768.0
+ fft = sp.fft(signal)
+ spectrum = abs(fft)[:int(NUM_SAMPLES/2)]
+ power = spectrum**2
+ bins = simps(np.split(power, NUM_BINS))
+ data['values'] = signal, spectrum, bins
+ except:
+ continue
+
+except:
+ print()
+ print(" *** Pyaudio package not installed, using synthesized audio data ***")
+ print()
+
+ # These are basically picked out of a hat to show something vaguely interesting
+ _t = np.arange(0, NUM_SAMPLES/SAMPLING_RATE, 1.0/SAMPLING_RATE)
+ _f = 2000 + 3000*(2+np.sin(4*np.linspace(0, 2*np.pi, 500)))
+ _i = 0
+
+ def update_audio_data():
+ while True:
+ global _i
+ A = 0.3 + 0.05 * np.random.random()
+ signal = A*np.sin(2*np.pi*_f[_i]*_t + np.sin(2*np.pi*200*_t))
+
fft = sp.fft(signal)
- spectrum = abs(fft)[:NUM_SAMPLES/2]
+ spectrum = abs(fft)[:int(NUM_SAMPLES/2)]
power = spectrum**2
bins = simps(np.split(power, NUM_BINS))
data['values'] = signal, spectrum, bins
- except:
- continue
+ _i = (_i + 1) % len(_f)
+ sleep(1.0/12)
diff --git a/examples/app/spectrogram/server_lifecycle.py b/examples/app/spectrogram/server_lifecycle.py
--- a/examples/app/spectrogram/server_lifecycle.py
+++ b/examples/app/spectrogram/server_lifecycle.py
@@ -3,6 +3,6 @@
import audio
def on_server_loaded(server_context):
- t = Thread(target=audio._get_audio_data, args=())
+ t = Thread(target=audio.update_audio_data, args=())
t.setDaemon(True)
t.start()
| {"golden_diff": "diff --git a/examples/app/spectrogram/audio.py b/examples/app/spectrogram/audio.py\n--- a/examples/app/spectrogram/audio.py\n+++ b/examples/app/spectrogram/audio.py\n@@ -1,11 +1,6 @@\n from __future__ import print_function\n \n-try:\n- import pyaudio\n-except:\n- print(\"This demo requires pyaudio installed to function\")\n- import sys\n- sys.exit(1)\n+from time import sleep\n \n import numpy as np\n import scipy as sp\n@@ -20,24 +15,51 @@\n \n data = {'values': None}\n \n-def _get_audio_data():\n- pa = pyaudio.PyAudio()\n- stream = pa.open(\n- format=pyaudio.paInt16,\n- channels=1,\n- rate=SAMPLING_RATE,\n- input=True,\n- frames_per_buffer=NUM_SAMPLES\n- )\n-\n- while True:\n- try:\n- raw_data = np.fromstring(stream.read(NUM_SAMPLES), dtype=np.int16)\n- signal = raw_data / 32768.0\n+try:\n+ import pyaudio\n+\n+ def update_audio_data():\n+ pa = pyaudio.PyAudio()\n+ stream = pa.open(\n+ format=pyaudio.paInt16,\n+ channels=1,\n+ rate=SAMPLING_RATE,\n+ input=True,\n+ frames_per_buffer=NUM_SAMPLES\n+ )\n+\n+ while True:\n+ try:\n+ raw_data = np.fromstring(stream.read(NUM_SAMPLES), dtype=np.int16)\n+ signal = raw_data / 32768.0\n+ fft = sp.fft(signal)\n+ spectrum = abs(fft)[:int(NUM_SAMPLES/2)]\n+ power = spectrum**2\n+ bins = simps(np.split(power, NUM_BINS))\n+ data['values'] = signal, spectrum, bins\n+ except:\n+ continue\n+\n+except:\n+ print()\n+ print(\" *** Pyaudio package not installed, using synthesized audio data ***\")\n+ print()\n+\n+ # These are basically picked out of a hat to show something vaguely interesting\n+ _t = np.arange(0, NUM_SAMPLES/SAMPLING_RATE, 1.0/SAMPLING_RATE)\n+ _f = 2000 + 3000*(2+np.sin(4*np.linspace(0, 2*np.pi, 500)))\n+ _i = 0\n+\n+ def update_audio_data():\n+ while True:\n+ global _i\n+ A = 0.3 + 0.05 * np.random.random()\n+ signal = A*np.sin(2*np.pi*_f[_i]*_t + np.sin(2*np.pi*200*_t))\n+\n fft = sp.fft(signal)\n- spectrum = abs(fft)[:NUM_SAMPLES/2]\n+ spectrum = abs(fft)[:int(NUM_SAMPLES/2)]\n power = spectrum**2\n bins = simps(np.split(power, NUM_BINS))\n data['values'] = signal, spectrum, bins\n- except:\n- continue\n+ _i = (_i + 1) % len(_f)\n+ sleep(1.0/12)\ndiff --git a/examples/app/spectrogram/server_lifecycle.py b/examples/app/spectrogram/server_lifecycle.py\n--- a/examples/app/spectrogram/server_lifecycle.py\n+++ b/examples/app/spectrogram/server_lifecycle.py\n@@ -3,6 +3,6 @@\n import audio\n \n def on_server_loaded(server_context):\n- t = Thread(target=audio._get_audio_data, args=())\n+ t = Thread(target=audio.update_audio_data, args=())\n t.setDaemon(True)\n t.start()\n", "issue": "Add synthetic data mode to spectrogram\nThe pyaudio package is not available on all platforms. An option mode to generate synthetic dat would allow the app to be run everywhere in some capacity. \r\n\r\n@philippjfr I think you might already have some code that could be re-used?\n", "before_files": [{"content": "from __future__ import print_function\n\ntry:\n import pyaudio\nexcept:\n print(\"This demo requires pyaudio installed to function\")\n import sys\n sys.exit(1)\n\nimport numpy as np\nimport scipy as sp\nfrom scipy.integrate import simps\n\nNUM_SAMPLES = 1024\nSAMPLING_RATE = 44100\nMAX_FREQ = SAMPLING_RATE / 2\nFREQ_SAMPLES = NUM_SAMPLES / 8\nTIMESLICE = 100 # ms\nNUM_BINS = 16\n\ndata = {'values': None}\n\ndef _get_audio_data():\n pa = pyaudio.PyAudio()\n stream = pa.open(\n format=pyaudio.paInt16,\n channels=1,\n rate=SAMPLING_RATE,\n input=True,\n frames_per_buffer=NUM_SAMPLES\n )\n\n while True:\n try:\n raw_data = np.fromstring(stream.read(NUM_SAMPLES), dtype=np.int16)\n signal = raw_data / 32768.0\n fft = sp.fft(signal)\n spectrum = abs(fft)[:NUM_SAMPLES/2]\n power = spectrum**2\n bins = simps(np.split(power, NUM_BINS))\n data['values'] = signal, spectrum, bins\n except:\n continue\n", "path": "examples/app/spectrogram/audio.py"}, {"content": "from threading import Thread\n\nimport audio\n\ndef on_server_loaded(server_context):\n t = Thread(target=audio._get_audio_data, args=())\n t.setDaemon(True)\n t.start()\n", "path": "examples/app/spectrogram/server_lifecycle.py"}]} | 1,039 | 833 |
gh_patches_debug_17638 | rasdani/github-patches | git_diff | joke2k__faker-283 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
ReadTheDocs spacing is off for providers
http://fake-factory.readthedocs.org/en/latest/providers/internet.html
The spacing makes this pretty unreadable without constantly scrolling back and forth, which is annoying.
Since these are the official extended docs linked to in the project ReadMe, it'd certainly be aesthetically nicer if they used native RTD formatting, for example see the formatting for the reference page of the factory boy project: http://factoryboy.readthedocs.org/en/latest/reference.html
I dug around a little trying to make a pull request to fix this, but it looks like Faker's docs are auto-generated somehow and I didn't have time to figure it all out. If you point me in the right direction, I'd be happy to submit a PR.
</issue>
<code>
[start of faker/build_docs.py]
1 # coding=utf-8
2
3 from __future__ import print_function
4 from __future__ import unicode_literals
5
6 import os
7 import sys
8
9
10 if sys.version < '3':
11 text_type = unicode
12 binary_type = str
13 else:
14 text_type = str
15 binary_type = bytes
16
17
18 DOCS_ROOT = os.path.abspath(os.path.join('..', 'docs'))
19
20
21 def write(fh, s):
22 return fh.write(s.encode('utf-8'))
23
24
25 def write_provider(fh, doc, provider, formatters, excludes=None):
26
27 if excludes is None:
28 excludes = []
29
30 write(fh, '\n')
31 title = "``{0}``".format(doc.get_provider_name(provider))
32 write(fh, '%s\n' % title)
33 write(fh, "-" * len(title))
34 write(fh, '\n\n::\n')
35
36 for signature, example in formatters.items():
37 if signature in excludes:
38 continue
39 try:
40 lines = text_type(example).expandtabs().splitlines()
41 except UnicodeEncodeError:
42 msg = 'error on "{0}" with value "{1}"'.format(signature, example)
43 raise Exception(msg)
44 margin = max(30, doc.max_name_len+1)
45 remains = 150 - margin
46 separator = '#'
47 write(fh, '\n')
48 for line in lines:
49 for i in range(0, (len(line) // remains) + 1):
50 write(fh, "\t{fake:<{margin}}{separator} {example}".format(
51 fake=signature,
52 separator=separator,
53 example=line[i*remains:(i+1)*remains],
54 margin=margin
55 ))
56 signature = separator = ' '
57 write(fh, '\n')
58
59
60 def write_docs(*args, **kwargs):
61 from faker import Faker, documentor
62 from faker.config import DEFAULT_LOCALE, AVAILABLE_LOCALES
63
64 fake = Faker(locale=DEFAULT_LOCALE)
65
66 from faker.providers import BaseProvider
67 base_provider_formatters = [f for f in dir(BaseProvider)]
68
69 doc = documentor.Documentor(fake)
70
71 formatters = doc.get_formatters(with_args=True, with_defaults=True)
72
73 for provider, fakers in formatters:
74 provider_name = doc.get_provider_name(provider)
75 fname = os.path.join(DOCS_ROOT, 'providers', '%s.rst' % provider_name)
76 with open(fname, 'wb') as fh:
77 write_provider(fh, doc, provider, fakers)
78
79 with open(os.path.join(DOCS_ROOT, 'providers.rst'), 'wb') as fh:
80 write(fh, 'Providers\n')
81 write(fh, '=========\n')
82 write(fh, '.. toctree::\n')
83 write(fh, ' :maxdepth: 2\n\n')
84 [write(fh, ' providers/%s\n' % doc.get_provider_name(provider))
85 for provider, fakers in formatters]
86
87 AVAILABLE_LOCALES = list(AVAILABLE_LOCALES)
88 AVAILABLE_LOCALES.sort()
89 for lang in AVAILABLE_LOCALES:
90 fname = os.path.join(DOCS_ROOT, 'locales', '%s.rst' % lang)
91 with open(fname, 'wb') as fh:
92 write(fh, '\n')
93 title = 'Language {0}\n'.format(lang)
94 write(fh, title)
95 write(fh, '=' * len(title))
96 write(fh, '\n')
97 fake = Faker(locale=lang)
98 d = documentor.Documentor(fake)
99
100 for p, fs in d.get_formatters(with_args=True, with_defaults=True,
101 locale=lang,
102 excludes=base_provider_formatters):
103 write_provider(fh, d, p, fs)
104
105 with open(os.path.join(DOCS_ROOT, 'locales.rst'), 'wb') as fh:
106 write(fh, 'Locales\n')
107 write(fh, '=======\n')
108 write(fh, '.. toctree::\n')
109 write(fh, ' :maxdepth: 2\n\n')
110 [write(fh, ' locales/%s\n' % lang) for lang in AVAILABLE_LOCALES]
111
112
113 # wrappers for sphinx
114 def _main(app, *args, **kwargs):
115 return write_docs(*args, **kwargs)
116
117
118 def setup(app):
119 app.connect(str('builder-inited'), _main)
120
121
122 if __name__ == "__main__":
123 write_docs(*sys.argv[1:])
124
[end of faker/build_docs.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/faker/build_docs.py b/faker/build_docs.py
--- a/faker/build_docs.py
+++ b/faker/build_docs.py
@@ -41,20 +41,11 @@
except UnicodeEncodeError:
msg = 'error on "{0}" with value "{1}"'.format(signature, example)
raise Exception(msg)
- margin = max(30, doc.max_name_len+1)
- remains = 150 - margin
- separator = '#'
write(fh, '\n')
- for line in lines:
- for i in range(0, (len(line) // remains) + 1):
- write(fh, "\t{fake:<{margin}}{separator} {example}".format(
- fake=signature,
- separator=separator,
- example=line[i*remains:(i+1)*remains],
- margin=margin
- ))
- signature = separator = ' '
- write(fh, '\n')
+ write(fh, "\t{fake}\n{example}\n".format(
+ fake=signature,
+ example='\n'.join(['\t# ' + line for line in lines]),
+ ))
def write_docs(*args, **kwargs):
| {"golden_diff": "diff --git a/faker/build_docs.py b/faker/build_docs.py\n--- a/faker/build_docs.py\n+++ b/faker/build_docs.py\n@@ -41,20 +41,11 @@\n except UnicodeEncodeError:\n msg = 'error on \"{0}\" with value \"{1}\"'.format(signature, example)\n raise Exception(msg)\n- margin = max(30, doc.max_name_len+1)\n- remains = 150 - margin\n- separator = '#'\n write(fh, '\\n')\n- for line in lines:\n- for i in range(0, (len(line) // remains) + 1):\n- write(fh, \"\\t{fake:<{margin}}{separator} {example}\".format(\n- fake=signature,\n- separator=separator,\n- example=line[i*remains:(i+1)*remains],\n- margin=margin\n- ))\n- signature = separator = ' '\n- write(fh, '\\n')\n+ write(fh, \"\\t{fake}\\n{example}\\n\".format(\n+ fake=signature,\n+ example='\\n'.join(['\\t# ' + line for line in lines]),\n+ ))\n \n \n def write_docs(*args, **kwargs):\n", "issue": "ReadTheDocs spacing is off for providers\nhttp://fake-factory.readthedocs.org/en/latest/providers/internet.html\n\nThe spacing makes this pretty unreadable without constantly scrolling back and forth, which is annoying. \n\nSince these are the official extended docs linked to in the project ReadMe, it'd certainly be aesthetically nicer if they used native RTD formatting, for example see the formatting for the reference page of the factory boy project: http://factoryboy.readthedocs.org/en/latest/reference.html\n\nI dug around a little trying to make a pull request to fix this, but it looks like Faker's docs are auto-generated somehow and I didn't have time to figure it all out. If you point me in the right direction, I'd be happy to submit a PR. \n\n", "before_files": [{"content": "# coding=utf-8\n\nfrom __future__ import print_function\nfrom __future__ import unicode_literals\n\nimport os\nimport sys\n\n\nif sys.version < '3':\n text_type = unicode\n binary_type = str\nelse:\n text_type = str\n binary_type = bytes\n\n\nDOCS_ROOT = os.path.abspath(os.path.join('..', 'docs'))\n\n\ndef write(fh, s):\n return fh.write(s.encode('utf-8'))\n\n\ndef write_provider(fh, doc, provider, formatters, excludes=None):\n\n if excludes is None:\n excludes = []\n\n write(fh, '\\n')\n title = \"``{0}``\".format(doc.get_provider_name(provider))\n write(fh, '%s\\n' % title)\n write(fh, \"-\" * len(title))\n write(fh, '\\n\\n::\\n')\n\n for signature, example in formatters.items():\n if signature in excludes:\n continue\n try:\n lines = text_type(example).expandtabs().splitlines()\n except UnicodeEncodeError:\n msg = 'error on \"{0}\" with value \"{1}\"'.format(signature, example)\n raise Exception(msg)\n margin = max(30, doc.max_name_len+1)\n remains = 150 - margin\n separator = '#'\n write(fh, '\\n')\n for line in lines:\n for i in range(0, (len(line) // remains) + 1):\n write(fh, \"\\t{fake:<{margin}}{separator} {example}\".format(\n fake=signature,\n separator=separator,\n example=line[i*remains:(i+1)*remains],\n margin=margin\n ))\n signature = separator = ' '\n write(fh, '\\n')\n\n\ndef write_docs(*args, **kwargs):\n from faker import Faker, documentor\n from faker.config import DEFAULT_LOCALE, AVAILABLE_LOCALES\n\n fake = Faker(locale=DEFAULT_LOCALE)\n\n from faker.providers import BaseProvider\n base_provider_formatters = [f for f in dir(BaseProvider)]\n\n doc = documentor.Documentor(fake)\n\n formatters = doc.get_formatters(with_args=True, with_defaults=True)\n\n for provider, fakers in formatters:\n provider_name = doc.get_provider_name(provider)\n fname = os.path.join(DOCS_ROOT, 'providers', '%s.rst' % provider_name)\n with open(fname, 'wb') as fh:\n write_provider(fh, doc, provider, fakers)\n\n with open(os.path.join(DOCS_ROOT, 'providers.rst'), 'wb') as fh:\n write(fh, 'Providers\\n')\n write(fh, '=========\\n')\n write(fh, '.. toctree::\\n')\n write(fh, ' :maxdepth: 2\\n\\n')\n [write(fh, ' providers/%s\\n' % doc.get_provider_name(provider))\n for provider, fakers in formatters]\n\n AVAILABLE_LOCALES = list(AVAILABLE_LOCALES)\n AVAILABLE_LOCALES.sort()\n for lang in AVAILABLE_LOCALES:\n fname = os.path.join(DOCS_ROOT, 'locales', '%s.rst' % lang)\n with open(fname, 'wb') as fh:\n write(fh, '\\n')\n title = 'Language {0}\\n'.format(lang)\n write(fh, title)\n write(fh, '=' * len(title))\n write(fh, '\\n')\n fake = Faker(locale=lang)\n d = documentor.Documentor(fake)\n\n for p, fs in d.get_formatters(with_args=True, with_defaults=True,\n locale=lang,\n excludes=base_provider_formatters):\n write_provider(fh, d, p, fs)\n\n with open(os.path.join(DOCS_ROOT, 'locales.rst'), 'wb') as fh:\n write(fh, 'Locales\\n')\n write(fh, '=======\\n')\n write(fh, '.. toctree::\\n')\n write(fh, ' :maxdepth: 2\\n\\n')\n [write(fh, ' locales/%s\\n' % lang) for lang in AVAILABLE_LOCALES]\n\n\n# wrappers for sphinx\ndef _main(app, *args, **kwargs):\n return write_docs(*args, **kwargs)\n\n\ndef setup(app):\n app.connect(str('builder-inited'), _main)\n\n\nif __name__ == \"__main__\":\n write_docs(*sys.argv[1:])\n", "path": "faker/build_docs.py"}]} | 1,920 | 274 |
gh_patches_debug_6435 | rasdani/github-patches | git_diff | scikit-image__scikit-image-5280 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Error in documentation for watershed
The [documentation for watershed](https://scikit-image.org/docs/dev/api/skimage.segmentation.html#skimage.segmentation.watershed) says
> image : ndarray (2-D, 3-D, …) of integers
> Data array where the lowest value points are labeled first.
But when I look into the code and the [official example](https://scikit-image.org/docs/dev/auto_examples/segmentation/plot_watershed.html), it seems that watershed is actually dealing with float arrays, not integer arrays. I think this might be a mistake in the documentation. If not, please explain how so. If so, I would be happy if someone - who knows how - could correct the documentation.
</issue>
<code>
[start of skimage/segmentation/_watershed.py]
1 """watershed.py - watershed algorithm
2
3 This module implements a watershed algorithm that apportions pixels into
4 marked basins. The algorithm uses a priority queue to hold the pixels
5 with the metric for the priority queue being pixel value, then the time
6 of entry into the queue - this settles ties in favor of the closest marker.
7
8 Some ideas taken from
9 Soille, "Automated Basin Delineation from Digital Elevation Models Using
10 Mathematical Morphology", Signal Processing 20 (1990) 171-182.
11
12 The most important insight in the paper is that entry time onto the queue
13 solves two problems: a pixel should be assigned to the neighbor with the
14 largest gradient or, if there is no gradient, pixels on a plateau should
15 be split between markers on opposite sides.
16
17 Originally part of CellProfiler, code licensed under both GPL and BSD licenses.
18 Website: http://www.cellprofiler.org
19
20 Copyright (c) 2003-2009 Massachusetts Institute of Technology
21 Copyright (c) 2009-2011 Broad Institute
22 All rights reserved.
23
24 Original author: Lee Kamentsky
25 """
26
27 import numpy as np
28 from scipy import ndimage as ndi
29
30 from . import _watershed_cy
31 from ..morphology.extrema import local_minima
32 from ..morphology._util import (_validate_connectivity,
33 _offsets_to_raveled_neighbors)
34 from ..util import crop, regular_seeds
35
36
37 def _validate_inputs(image, markers, mask, connectivity):
38 """Ensure that all inputs to watershed have matching shapes and types.
39
40 Parameters
41 ----------
42 image : array
43 The input image.
44 markers : int or array of int
45 The marker image.
46 mask : array, or None
47 A boolean mask, True where we want to compute the watershed.
48 connectivity : int in {1, ..., image.ndim}
49 The connectivity of the neighborhood of a pixel.
50
51 Returns
52 -------
53 image, markers, mask : arrays
54 The validated and formatted arrays. Image will have dtype float64,
55 markers int32, and mask int8. If ``None`` was given for the mask,
56 it is a volume of all 1s.
57
58 Raises
59 ------
60 ValueError
61 If the shapes of the given arrays don't match.
62 """
63 n_pixels = image.size
64 if mask is None:
65 # Use a complete `True` mask if none is provided
66 mask = np.ones(image.shape, bool)
67 else:
68 mask = np.asanyarray(mask, dtype=bool)
69 n_pixels = np.sum(mask)
70 if mask.shape != image.shape:
71 message = ("`mask` (shape {}) must have same shape as "
72 "`image` (shape {})".format(mask.shape, image.shape))
73 raise ValueError(message)
74 if markers is None:
75 markers_bool = local_minima(image, connectivity=connectivity) * mask
76 footprint = ndi.generate_binary_structure(markers_bool.ndim, connectivity)
77 markers = ndi.label(markers_bool, structure=footprint)[0]
78 elif not isinstance(markers, (np.ndarray, list, tuple)):
79 # not array-like, assume int
80 # given int, assume that number of markers *within mask*.
81 markers = regular_seeds(image.shape,
82 int(markers / (n_pixels / image.size)))
83 markers *= mask
84 else:
85 markers = np.asanyarray(markers) * mask
86 if markers.shape != image.shape:
87 message = ("`markers` (shape {}) must have same shape as "
88 "`image` (shape {})".format(markers.shape, image.shape))
89 raise ValueError(message)
90 return (image.astype(np.float64),
91 markers.astype(np.int32),
92 mask.astype(np.int8))
93
94
95 def watershed(image, markers=None, connectivity=1, offset=None, mask=None,
96 compactness=0, watershed_line=False):
97 """Find watershed basins in `image` flooded from given `markers`.
98
99 Parameters
100 ----------
101 image : ndarray (2-D, 3-D, ...) of integers
102 Data array where the lowest value points are labeled first.
103 markers : int, or ndarray of int, same shape as `image`, optional
104 The desired number of markers, or an array marking the basins with the
105 values to be assigned in the label matrix. Zero means not a marker. If
106 ``None`` (no markers given), the local minima of the image are used as
107 markers.
108 connectivity : ndarray, optional
109 An array with the same number of dimensions as `image` whose
110 non-zero elements indicate neighbors for connection.
111 Following the scipy convention, default is a one-connected array of
112 the dimension of the image.
113 offset : array_like of shape image.ndim, optional
114 offset of the connectivity (one offset per dimension)
115 mask : ndarray of bools or 0s and 1s, optional
116 Array of same shape as `image`. Only points at which mask == True
117 will be labeled.
118 compactness : float, optional
119 Use compact watershed [3]_ with given compactness parameter.
120 Higher values result in more regularly-shaped watershed basins.
121 watershed_line : bool, optional
122 If watershed_line is True, a one-pixel wide line separates the regions
123 obtained by the watershed algorithm. The line has the label 0.
124
125 Returns
126 -------
127 out : ndarray
128 A labeled matrix of the same type and shape as markers
129
130 See Also
131 --------
132 skimage.segmentation.random_walker : random walker segmentation
133 A segmentation algorithm based on anisotropic diffusion, usually
134 slower than the watershed but with good results on noisy data and
135 boundaries with holes.
136
137 Notes
138 -----
139 This function implements a watershed algorithm [1]_ [2]_ that apportions
140 pixels into marked basins. The algorithm uses a priority queue to hold
141 the pixels with the metric for the priority queue being pixel value, then
142 the time of entry into the queue - this settles ties in favor of the
143 closest marker.
144
145 Some ideas taken from
146 Soille, "Automated Basin Delineation from Digital Elevation Models Using
147 Mathematical Morphology", Signal Processing 20 (1990) 171-182
148
149 The most important insight in the paper is that entry time onto the queue
150 solves two problems: a pixel should be assigned to the neighbor with the
151 largest gradient or, if there is no gradient, pixels on a plateau should
152 be split between markers on opposite sides.
153
154 This implementation converts all arguments to specific, lowest common
155 denominator types, then passes these to a C algorithm.
156
157 Markers can be determined manually, or automatically using for example
158 the local minima of the gradient of the image, or the local maxima of the
159 distance function to the background for separating overlapping objects
160 (see example).
161
162 References
163 ----------
164 .. [1] https://en.wikipedia.org/wiki/Watershed_%28image_processing%29
165
166 .. [2] http://cmm.ensmp.fr/~beucher/wtshed.html
167
168 .. [3] Peer Neubert & Peter Protzel (2014). Compact Watershed and
169 Preemptive SLIC: On Improving Trade-offs of Superpixel Segmentation
170 Algorithms. ICPR 2014, pp 996-1001. :DOI:`10.1109/ICPR.2014.181`
171 https://www.tu-chemnitz.de/etit/proaut/publications/cws_pSLIC_ICPR.pdf
172
173 Examples
174 --------
175 The watershed algorithm is useful to separate overlapping objects.
176
177 We first generate an initial image with two overlapping circles:
178
179 >>> x, y = np.indices((80, 80))
180 >>> x1, y1, x2, y2 = 28, 28, 44, 52
181 >>> r1, r2 = 16, 20
182 >>> mask_circle1 = (x - x1)**2 + (y - y1)**2 < r1**2
183 >>> mask_circle2 = (x - x2)**2 + (y - y2)**2 < r2**2
184 >>> image = np.logical_or(mask_circle1, mask_circle2)
185
186 Next, we want to separate the two circles. We generate markers at the
187 maxima of the distance to the background:
188
189 >>> from scipy import ndimage as ndi
190 >>> distance = ndi.distance_transform_edt(image)
191 >>> from skimage.feature import peak_local_max
192 >>> local_maxi = peak_local_max(distance, labels=image,
193 ... footprint=np.ones((3, 3)),
194 ... indices=False)
195 >>> markers = ndi.label(local_maxi)[0]
196
197 Finally, we run the watershed on the image and markers:
198
199 >>> labels = watershed(-distance, markers, mask=image)
200
201 The algorithm works also for 3-D images, and can be used for example to
202 separate overlapping spheres.
203 """
204 image, markers, mask = _validate_inputs(image, markers, mask, connectivity)
205 connectivity, offset = _validate_connectivity(image.ndim, connectivity,
206 offset)
207
208 # pad the image, markers, and mask so that we can use the mask to
209 # keep from running off the edges
210 pad_width = [(p, p) for p in offset]
211 image = np.pad(image, pad_width, mode='constant')
212 mask = np.pad(mask, pad_width, mode='constant').ravel()
213 output = np.pad(markers, pad_width, mode='constant')
214
215 flat_neighborhood = _offsets_to_raveled_neighbors(
216 image.shape, connectivity, center=offset)
217 marker_locations = np.flatnonzero(output)
218 image_strides = np.array(image.strides, dtype=np.intp) // image.itemsize
219
220 _watershed_cy.watershed_raveled(image.ravel(),
221 marker_locations, flat_neighborhood,
222 mask, image_strides, compactness,
223 output.ravel(),
224 watershed_line)
225
226 output = crop(output, pad_width, copy=True)
227
228 return output
229
[end of skimage/segmentation/_watershed.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/skimage/segmentation/_watershed.py b/skimage/segmentation/_watershed.py
--- a/skimage/segmentation/_watershed.py
+++ b/skimage/segmentation/_watershed.py
@@ -98,7 +98,7 @@
Parameters
----------
- image : ndarray (2-D, 3-D, ...) of integers
+ image : ndarray (2-D, 3-D, ...)
Data array where the lowest value points are labeled first.
markers : int, or ndarray of int, same shape as `image`, optional
The desired number of markers, or an array marking the basins with the
| {"golden_diff": "diff --git a/skimage/segmentation/_watershed.py b/skimage/segmentation/_watershed.py\n--- a/skimage/segmentation/_watershed.py\n+++ b/skimage/segmentation/_watershed.py\n@@ -98,7 +98,7 @@\n \n Parameters\n ----------\n- image : ndarray (2-D, 3-D, ...) of integers\n+ image : ndarray (2-D, 3-D, ...)\n Data array where the lowest value points are labeled first.\n markers : int, or ndarray of int, same shape as `image`, optional\n The desired number of markers, or an array marking the basins with the\n", "issue": "Error in documentation for watershed\nThe [documentation for watershed](https://scikit-image.org/docs/dev/api/skimage.segmentation.html#skimage.segmentation.watershed) says\r\n\r\n> image : ndarray (2-D, 3-D, \u2026) of integers\r\n> Data array where the lowest value points are labeled first.\r\n\r\nBut when I look into the code and the [official example](https://scikit-image.org/docs/dev/auto_examples/segmentation/plot_watershed.html), it seems that watershed is actually dealing with float arrays, not integer arrays. I think this might be a mistake in the documentation. If not, please explain how so. If so, I would be happy if someone - who knows how - could correct the documentation.\n", "before_files": [{"content": "\"\"\"watershed.py - watershed algorithm\n\nThis module implements a watershed algorithm that apportions pixels into\nmarked basins. The algorithm uses a priority queue to hold the pixels\nwith the metric for the priority queue being pixel value, then the time\nof entry into the queue - this settles ties in favor of the closest marker.\n\nSome ideas taken from\nSoille, \"Automated Basin Delineation from Digital Elevation Models Using\nMathematical Morphology\", Signal Processing 20 (1990) 171-182.\n\nThe most important insight in the paper is that entry time onto the queue\nsolves two problems: a pixel should be assigned to the neighbor with the\nlargest gradient or, if there is no gradient, pixels on a plateau should\nbe split between markers on opposite sides.\n\nOriginally part of CellProfiler, code licensed under both GPL and BSD licenses.\nWebsite: http://www.cellprofiler.org\n\nCopyright (c) 2003-2009 Massachusetts Institute of Technology\nCopyright (c) 2009-2011 Broad Institute\nAll rights reserved.\n\nOriginal author: Lee Kamentsky\n\"\"\"\n\nimport numpy as np\nfrom scipy import ndimage as ndi\n\nfrom . import _watershed_cy\nfrom ..morphology.extrema import local_minima\nfrom ..morphology._util import (_validate_connectivity,\n _offsets_to_raveled_neighbors)\nfrom ..util import crop, regular_seeds\n\n\ndef _validate_inputs(image, markers, mask, connectivity):\n \"\"\"Ensure that all inputs to watershed have matching shapes and types.\n\n Parameters\n ----------\n image : array\n The input image.\n markers : int or array of int\n The marker image.\n mask : array, or None\n A boolean mask, True where we want to compute the watershed.\n connectivity : int in {1, ..., image.ndim}\n The connectivity of the neighborhood of a pixel.\n\n Returns\n -------\n image, markers, mask : arrays\n The validated and formatted arrays. Image will have dtype float64,\n markers int32, and mask int8. If ``None`` was given for the mask,\n it is a volume of all 1s.\n\n Raises\n ------\n ValueError\n If the shapes of the given arrays don't match.\n \"\"\"\n n_pixels = image.size\n if mask is None:\n # Use a complete `True` mask if none is provided\n mask = np.ones(image.shape, bool)\n else:\n mask = np.asanyarray(mask, dtype=bool)\n n_pixels = np.sum(mask)\n if mask.shape != image.shape:\n message = (\"`mask` (shape {}) must have same shape as \"\n \"`image` (shape {})\".format(mask.shape, image.shape))\n raise ValueError(message)\n if markers is None:\n markers_bool = local_minima(image, connectivity=connectivity) * mask\n footprint = ndi.generate_binary_structure(markers_bool.ndim, connectivity)\n markers = ndi.label(markers_bool, structure=footprint)[0]\n elif not isinstance(markers, (np.ndarray, list, tuple)):\n # not array-like, assume int\n # given int, assume that number of markers *within mask*.\n markers = regular_seeds(image.shape,\n int(markers / (n_pixels / image.size)))\n markers *= mask\n else:\n markers = np.asanyarray(markers) * mask\n if markers.shape != image.shape:\n message = (\"`markers` (shape {}) must have same shape as \"\n \"`image` (shape {})\".format(markers.shape, image.shape))\n raise ValueError(message)\n return (image.astype(np.float64),\n markers.astype(np.int32),\n mask.astype(np.int8))\n\n\ndef watershed(image, markers=None, connectivity=1, offset=None, mask=None,\n compactness=0, watershed_line=False):\n \"\"\"Find watershed basins in `image` flooded from given `markers`.\n\n Parameters\n ----------\n image : ndarray (2-D, 3-D, ...) of integers\n Data array where the lowest value points are labeled first.\n markers : int, or ndarray of int, same shape as `image`, optional\n The desired number of markers, or an array marking the basins with the\n values to be assigned in the label matrix. Zero means not a marker. If\n ``None`` (no markers given), the local minima of the image are used as\n markers.\n connectivity : ndarray, optional\n An array with the same number of dimensions as `image` whose\n non-zero elements indicate neighbors for connection.\n Following the scipy convention, default is a one-connected array of\n the dimension of the image.\n offset : array_like of shape image.ndim, optional\n offset of the connectivity (one offset per dimension)\n mask : ndarray of bools or 0s and 1s, optional\n Array of same shape as `image`. Only points at which mask == True\n will be labeled.\n compactness : float, optional\n Use compact watershed [3]_ with given compactness parameter.\n Higher values result in more regularly-shaped watershed basins.\n watershed_line : bool, optional\n If watershed_line is True, a one-pixel wide line separates the regions\n obtained by the watershed algorithm. The line has the label 0.\n\n Returns\n -------\n out : ndarray\n A labeled matrix of the same type and shape as markers\n\n See Also\n --------\n skimage.segmentation.random_walker : random walker segmentation\n A segmentation algorithm based on anisotropic diffusion, usually\n slower than the watershed but with good results on noisy data and\n boundaries with holes.\n\n Notes\n -----\n This function implements a watershed algorithm [1]_ [2]_ that apportions\n pixels into marked basins. The algorithm uses a priority queue to hold\n the pixels with the metric for the priority queue being pixel value, then\n the time of entry into the queue - this settles ties in favor of the\n closest marker.\n\n Some ideas taken from\n Soille, \"Automated Basin Delineation from Digital Elevation Models Using\n Mathematical Morphology\", Signal Processing 20 (1990) 171-182\n\n The most important insight in the paper is that entry time onto the queue\n solves two problems: a pixel should be assigned to the neighbor with the\n largest gradient or, if there is no gradient, pixels on a plateau should\n be split between markers on opposite sides.\n\n This implementation converts all arguments to specific, lowest common\n denominator types, then passes these to a C algorithm.\n\n Markers can be determined manually, or automatically using for example\n the local minima of the gradient of the image, or the local maxima of the\n distance function to the background for separating overlapping objects\n (see example).\n\n References\n ----------\n .. [1] https://en.wikipedia.org/wiki/Watershed_%28image_processing%29\n\n .. [2] http://cmm.ensmp.fr/~beucher/wtshed.html\n\n .. [3] Peer Neubert & Peter Protzel (2014). Compact Watershed and\n Preemptive SLIC: On Improving Trade-offs of Superpixel Segmentation\n Algorithms. ICPR 2014, pp 996-1001. :DOI:`10.1109/ICPR.2014.181`\n https://www.tu-chemnitz.de/etit/proaut/publications/cws_pSLIC_ICPR.pdf\n\n Examples\n --------\n The watershed algorithm is useful to separate overlapping objects.\n\n We first generate an initial image with two overlapping circles:\n\n >>> x, y = np.indices((80, 80))\n >>> x1, y1, x2, y2 = 28, 28, 44, 52\n >>> r1, r2 = 16, 20\n >>> mask_circle1 = (x - x1)**2 + (y - y1)**2 < r1**2\n >>> mask_circle2 = (x - x2)**2 + (y - y2)**2 < r2**2\n >>> image = np.logical_or(mask_circle1, mask_circle2)\n\n Next, we want to separate the two circles. We generate markers at the\n maxima of the distance to the background:\n\n >>> from scipy import ndimage as ndi\n >>> distance = ndi.distance_transform_edt(image)\n >>> from skimage.feature import peak_local_max\n >>> local_maxi = peak_local_max(distance, labels=image,\n ... footprint=np.ones((3, 3)),\n ... indices=False)\n >>> markers = ndi.label(local_maxi)[0]\n\n Finally, we run the watershed on the image and markers:\n\n >>> labels = watershed(-distance, markers, mask=image)\n\n The algorithm works also for 3-D images, and can be used for example to\n separate overlapping spheres.\n \"\"\"\n image, markers, mask = _validate_inputs(image, markers, mask, connectivity)\n connectivity, offset = _validate_connectivity(image.ndim, connectivity,\n offset)\n\n # pad the image, markers, and mask so that we can use the mask to\n # keep from running off the edges\n pad_width = [(p, p) for p in offset]\n image = np.pad(image, pad_width, mode='constant')\n mask = np.pad(mask, pad_width, mode='constant').ravel()\n output = np.pad(markers, pad_width, mode='constant')\n\n flat_neighborhood = _offsets_to_raveled_neighbors(\n image.shape, connectivity, center=offset)\n marker_locations = np.flatnonzero(output)\n image_strides = np.array(image.strides, dtype=np.intp) // image.itemsize\n\n _watershed_cy.watershed_raveled(image.ravel(),\n marker_locations, flat_neighborhood,\n mask, image_strides, compactness,\n output.ravel(),\n watershed_line)\n\n output = crop(output, pad_width, copy=True)\n\n return output\n", "path": "skimage/segmentation/_watershed.py"}]} | 3,496 | 148 |
gh_patches_debug_35547 | rasdani/github-patches | git_diff | aws__sagemaker-python-sdk-972 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
PipelineModel deploy method cannot find update_endpoint argument
Please fill out the form below.
### System Information
- **Framework (e.g. TensorFlow) / Algorithm (e.g. KMeans)**:
SKLearn with kNN
- **Framework Version**:
- **Python Version**:
Python 3
- **CPU or GPU**:
CPU
- **Python SDK Version**:
- **Are you using a custom image**:
No
### Describe the problem
I want to update an endpoint that already exists when deploying from a PipelineModel. The update_endpoint flag is supported on Estimators.deploy but not on PipelineModel.deploy
### Minimal repro / logs
---------------------------------------------------------------------------
TypeError Traceback (most recent call last)
<ipython-input-116-1bc40bd315b2> in <module>()
22 instance_type='ml.t2.medium',
23 endpoint_name=endpoint_name,
---> 24 update_endpoint=True)
TypeError: deploy() got an unexpected keyword argument 'update_endpoint'
- **Exact command to reproduce**:
model_name = 'inference-pipeline-' + timestamp_prefix
endpoint_name = 'sagemaker-ep'
sm_model = PipelineModel(
name=model_name,
role=role,
models=[
sklearn_preprocessor_model,
sklearn_estimator_model])
sm_model.deploy(initial_instance_count=1,
instance_type='ml.t2.medium',
endpoint_name=endpoint_name,
update_endpoint=True)
</issue>
<code>
[start of src/sagemaker/pipeline.py]
1 # Copyright 2017-2018 Amazon.com, Inc. or its affiliates. All Rights Reserved.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License"). You
4 # may not use this file except in compliance with the License. A copy of
5 # the License is located at
6 #
7 # http://aws.amazon.com/apache2.0/
8 #
9 # or in the "license" file accompanying this file. This file is
10 # distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
11 # ANY KIND, either express or implied. See the License for the specific
12 # language governing permissions and limitations under the License.
13 """Placeholder docstring"""
14 from __future__ import absolute_import
15
16 import sagemaker
17 from sagemaker.session import Session
18 from sagemaker.utils import name_from_image
19 from sagemaker.transformer import Transformer
20
21
22 class PipelineModel(object):
23 """A pipeline of SageMaker
24 ``Model``s that can be deployed to an ``Endpoint``.
25 """
26
27 def __init__(
28 self, models, role, predictor_cls=None, name=None, vpc_config=None, sagemaker_session=None
29 ):
30 """Initialize an SageMaker ``Model`` which can be used to build an
31 Inference Pipeline comprising of multiple model containers.
32
33 Args:
34 models (list[sagemaker.Model]): For using multiple containers to
35 build an inference pipeline, you can pass a list of ``sagemaker.Model`` objects
36 in the order you want the inference to happen.
37 role (str): An AWS IAM role (either name or full ARN). The Amazon
38 SageMaker training jobs and APIs that create Amazon SageMaker
39 endpoints use this role to access training data and model
40 artifacts. After the endpoint is created, the inference code
41 might use the IAM role, if it needs to access an AWS resource.
42 predictor_cls (callable[string, sagemaker.session.Session]): A
43 function to call to create a predictor (default: None). If not
44 None, ``deploy`` will return the result of invoking this
45 function on the created endpoint name.
46 name (str): The model name. If None, a default model name will be
47 selected on each ``deploy``.
48 vpc_config (dict[str, list[str]]): The VpcConfig set on the model
49 (default: None)
50 * 'Subnets' (list[str]): List of subnet ids.
51 * 'SecurityGroupIds' (list[str]): List of security group ids.
52 sagemaker_session (sagemaker.session.Session): A SageMaker Session
53 object, used for SageMaker interactions (default: None). If not
54 specified, one is created using the default AWS configuration
55 chain.
56 """
57 self.models = models
58 self.role = role
59 self.predictor_cls = predictor_cls
60 self.name = name
61 self.vpc_config = vpc_config
62 self.sagemaker_session = sagemaker_session
63 self._model_name = None
64 self.endpoint_name = None
65
66 def pipeline_container_def(self, instance_type):
67 """Return a dict created by ``sagemaker.pipeline_container_def()`` for
68 deploying this model to a specified instance type.
69
70 Subclasses can override this to provide custom container definitions
71 for deployment to a specific instance type. Called by ``deploy()``.
72
73 Args:
74 instance_type (str): The EC2 instance type to deploy this Model to.
75 For example, 'ml.p2.xlarge'.
76
77 Returns:
78 list[dict[str, str]]: A list of container definition objects usable
79 with the CreateModel API in the scenario of multiple containers
80 (Inference Pipeline).
81 """
82
83 return sagemaker.pipeline_container_def(self.models, instance_type)
84
85 def deploy(
86 self, initial_instance_count, instance_type, endpoint_name=None, tags=None, wait=True
87 ):
88 """Deploy this ``Model`` to an ``Endpoint`` and optionally return a
89 ``Predictor``.
90
91 Create a SageMaker ``Model`` and ``EndpointConfig``, and deploy an
92 ``Endpoint`` from this ``Model``. If ``self.predictor_cls`` is not None,
93 this method returns a the result of invoking ``self.predictor_cls`` on
94 the created endpoint name.
95
96 The name of the created model is accessible in the ``name`` field of
97 this ``Model`` after deploy returns
98
99 The name of the created endpoint is accessible in the
100 ``endpoint_name`` field of this ``Model`` after deploy returns.
101
102 Args:
103 initial_instance_count (int): The initial number of instances to run
104 in the ``Endpoint`` created from this ``Model``.
105 instance_type (str): The EC2 instance type to deploy this Model to.
106 For example, 'ml.p2.xlarge'.
107 endpoint_name (str): The name of the endpoint to create (default:
108 None). If not specified, a unique endpoint name will be created.
109 tags (List[dict[str, str]]): The list of tags to attach to this
110 specific endpoint.
111 wait (bool): Whether the call should wait until the deployment of
112 model completes (default: True).
113
114 Returns:
115 callable[string, sagemaker.session.Session] or None: Invocation of
116 ``self.predictor_cls`` on the created endpoint name, if ``self.predictor_cls``
117 is not None. Otherwise, return None.
118 """
119 if not self.sagemaker_session:
120 self.sagemaker_session = Session()
121
122 containers = self.pipeline_container_def(instance_type)
123
124 self.name = self.name or name_from_image(containers[0]["Image"])
125 self.sagemaker_session.create_model(
126 self.name, self.role, containers, vpc_config=self.vpc_config
127 )
128
129 production_variant = sagemaker.production_variant(
130 self.name, instance_type, initial_instance_count
131 )
132 self.endpoint_name = endpoint_name or self.name
133 self.sagemaker_session.endpoint_from_production_variants(
134 self.endpoint_name, [production_variant], tags, wait=wait
135 )
136 if self.predictor_cls:
137 return self.predictor_cls(self.endpoint_name, self.sagemaker_session)
138 return None
139
140 def _create_sagemaker_pipeline_model(self, instance_type):
141 """Create a SageMaker Model Entity
142
143 Args:
144 instance_type (str): The EC2 instance type that this Model will be
145 used for, this is only used to determine if the image needs GPU
146 support or not.
147 """
148 if not self.sagemaker_session:
149 self.sagemaker_session = Session()
150
151 containers = self.pipeline_container_def(instance_type)
152
153 self.name = self.name or name_from_image(containers[0]["Image"])
154 self.sagemaker_session.create_model(
155 self.name, self.role, containers, vpc_config=self.vpc_config
156 )
157
158 def transformer(
159 self,
160 instance_count,
161 instance_type,
162 strategy=None,
163 assemble_with=None,
164 output_path=None,
165 output_kms_key=None,
166 accept=None,
167 env=None,
168 max_concurrent_transforms=None,
169 max_payload=None,
170 tags=None,
171 volume_kms_key=None,
172 ):
173 """Return a ``Transformer`` that uses this Model.
174
175 Args:
176 instance_count (int): Number of EC2 instances to use.
177 instance_type (str): Type of EC2 instance to use, for example,
178 'ml.c4.xlarge'.
179 strategy (str): The strategy used to decide how to batch records in
180 a single request (default: None). Valid values: 'MULTI_RECORD'
181 and 'SINGLE_RECORD'.
182 assemble_with (str): How the output is assembled (default: None).
183 Valid values: 'Line' or 'None'.
184 output_path (str): S3 location for saving the transform result. If
185 not specified, results are stored to a default bucket.
186 output_kms_key (str): Optional. KMS key ID for encrypting the
187 transform output (default: None).
188 accept (str): The content type accepted by the endpoint deployed
189 during the transform job.
190 env (dict): Environment variables to be set for use during the
191 transform job (default: None).
192 max_concurrent_transforms (int): The maximum number of HTTP requests
193 to be made to each individual transform container at one time.
194 max_payload (int): Maximum size of the payload in a single HTTP
195 request to the container in MB.
196 tags (list[dict]): List of tags for labeling a transform job. If
197 none specified, then the tags used for the training job are used
198 for the transform job.
199 volume_kms_key (str): Optional. KMS key ID for encrypting the volume
200 attached to the ML compute instance (default: None).
201 """
202 self._create_sagemaker_pipeline_model(instance_type)
203
204 return Transformer(
205 self.name,
206 instance_count,
207 instance_type,
208 strategy=strategy,
209 assemble_with=assemble_with,
210 output_path=output_path,
211 output_kms_key=output_kms_key,
212 accept=accept,
213 max_concurrent_transforms=max_concurrent_transforms,
214 max_payload=max_payload,
215 env=env,
216 tags=tags,
217 base_transform_job_name=self.name,
218 volume_kms_key=volume_kms_key,
219 sagemaker_session=self.sagemaker_session,
220 )
221
222 def delete_model(self):
223 """Delete the SageMaker model backing this pipeline model. This does not
224 delete the list of SageMaker models used in multiple containers to build
225 the inference pipeline.
226 """
227
228 if self.name is None:
229 raise ValueError("The SageMaker model must be created before attempting to delete.")
230
231 self.sagemaker_session.delete_model(self.name)
232
[end of src/sagemaker/pipeline.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/src/sagemaker/pipeline.py b/src/sagemaker/pipeline.py
--- a/src/sagemaker/pipeline.py
+++ b/src/sagemaker/pipeline.py
@@ -83,7 +83,13 @@
return sagemaker.pipeline_container_def(self.models, instance_type)
def deploy(
- self, initial_instance_count, instance_type, endpoint_name=None, tags=None, wait=True
+ self,
+ initial_instance_count,
+ instance_type,
+ endpoint_name=None,
+ tags=None,
+ wait=True,
+ update_endpoint=False,
):
"""Deploy this ``Model`` to an ``Endpoint`` and optionally return a
``Predictor``.
@@ -110,6 +116,11 @@
specific endpoint.
wait (bool): Whether the call should wait until the deployment of
model completes (default: True).
+ update_endpoint (bool): Flag to update the model in an existing
+ Amazon SageMaker endpoint. If True, this will deploy a new
+ EndpointConfig to an already existing endpoint and delete
+ resources corresponding to the previous EndpointConfig. If
+ False, a new endpoint will be created. Default: False
Returns:
callable[string, sagemaker.session.Session] or None: Invocation of
@@ -130,9 +141,21 @@
self.name, instance_type, initial_instance_count
)
self.endpoint_name = endpoint_name or self.name
- self.sagemaker_session.endpoint_from_production_variants(
- self.endpoint_name, [production_variant], tags, wait=wait
- )
+
+ if update_endpoint:
+ endpoint_config_name = self.sagemaker_session.create_endpoint_config(
+ name=self.name,
+ model_name=self.name,
+ initial_instance_count=initial_instance_count,
+ instance_type=instance_type,
+ tags=tags,
+ )
+ self.sagemaker_session.update_endpoint(self.endpoint_name, endpoint_config_name)
+ else:
+ self.sagemaker_session.endpoint_from_production_variants(
+ self.endpoint_name, [production_variant], tags, wait=wait
+ )
+
if self.predictor_cls:
return self.predictor_cls(self.endpoint_name, self.sagemaker_session)
return None
| {"golden_diff": "diff --git a/src/sagemaker/pipeline.py b/src/sagemaker/pipeline.py\n--- a/src/sagemaker/pipeline.py\n+++ b/src/sagemaker/pipeline.py\n@@ -83,7 +83,13 @@\n return sagemaker.pipeline_container_def(self.models, instance_type)\n \n def deploy(\n- self, initial_instance_count, instance_type, endpoint_name=None, tags=None, wait=True\n+ self,\n+ initial_instance_count,\n+ instance_type,\n+ endpoint_name=None,\n+ tags=None,\n+ wait=True,\n+ update_endpoint=False,\n ):\n \"\"\"Deploy this ``Model`` to an ``Endpoint`` and optionally return a\n ``Predictor``.\n@@ -110,6 +116,11 @@\n specific endpoint.\n wait (bool): Whether the call should wait until the deployment of\n model completes (default: True).\n+ update_endpoint (bool): Flag to update the model in an existing\n+ Amazon SageMaker endpoint. If True, this will deploy a new\n+ EndpointConfig to an already existing endpoint and delete\n+ resources corresponding to the previous EndpointConfig. If\n+ False, a new endpoint will be created. Default: False\n \n Returns:\n callable[string, sagemaker.session.Session] or None: Invocation of\n@@ -130,9 +141,21 @@\n self.name, instance_type, initial_instance_count\n )\n self.endpoint_name = endpoint_name or self.name\n- self.sagemaker_session.endpoint_from_production_variants(\n- self.endpoint_name, [production_variant], tags, wait=wait\n- )\n+\n+ if update_endpoint:\n+ endpoint_config_name = self.sagemaker_session.create_endpoint_config(\n+ name=self.name,\n+ model_name=self.name,\n+ initial_instance_count=initial_instance_count,\n+ instance_type=instance_type,\n+ tags=tags,\n+ )\n+ self.sagemaker_session.update_endpoint(self.endpoint_name, endpoint_config_name)\n+ else:\n+ self.sagemaker_session.endpoint_from_production_variants(\n+ self.endpoint_name, [production_variant], tags, wait=wait\n+ )\n+\n if self.predictor_cls:\n return self.predictor_cls(self.endpoint_name, self.sagemaker_session)\n return None\n", "issue": "PipelineModel deploy method cannot find update_endpoint argument\nPlease fill out the form below.\r\n\r\n### System Information\r\n- **Framework (e.g. TensorFlow) / Algorithm (e.g. KMeans)**:\r\nSKLearn with kNN\r\n- **Framework Version**:\r\n- **Python Version**:\r\nPython 3\r\n- **CPU or GPU**:\r\nCPU\r\n- **Python SDK Version**:\r\n- **Are you using a custom image**:\r\nNo\r\n\r\n### Describe the problem\r\nI want to update an endpoint that already exists when deploying from a PipelineModel. The update_endpoint flag is supported on Estimators.deploy but not on PipelineModel.deploy\r\n\r\n### Minimal repro / logs\r\n---------------------------------------------------------------------------\r\nTypeError Traceback (most recent call last)\r\n<ipython-input-116-1bc40bd315b2> in <module>()\r\n 22 instance_type='ml.t2.medium',\r\n 23 endpoint_name=endpoint_name,\r\n---> 24 update_endpoint=True)\r\n\r\nTypeError: deploy() got an unexpected keyword argument 'update_endpoint'\r\n\r\n- **Exact command to reproduce**:\r\nmodel_name = 'inference-pipeline-' + timestamp_prefix\r\nendpoint_name = 'sagemaker-ep'\r\nsm_model = PipelineModel(\r\n name=model_name, \r\n role=role, \r\n models=[\r\n sklearn_preprocessor_model, \r\n sklearn_estimator_model])\r\n\r\nsm_model.deploy(initial_instance_count=1,\r\n instance_type='ml.t2.medium',\r\n endpoint_name=endpoint_name,\r\n update_endpoint=True)\n", "before_files": [{"content": "# Copyright 2017-2018 Amazon.com, Inc. or its affiliates. All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\"). You\n# may not use this file except in compliance with the License. A copy of\n# the License is located at\n#\n# http://aws.amazon.com/apache2.0/\n#\n# or in the \"license\" file accompanying this file. This file is\n# distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF\n# ANY KIND, either express or implied. See the License for the specific\n# language governing permissions and limitations under the License.\n\"\"\"Placeholder docstring\"\"\"\nfrom __future__ import absolute_import\n\nimport sagemaker\nfrom sagemaker.session import Session\nfrom sagemaker.utils import name_from_image\nfrom sagemaker.transformer import Transformer\n\n\nclass PipelineModel(object):\n \"\"\"A pipeline of SageMaker\n ``Model``s that can be deployed to an ``Endpoint``.\n \"\"\"\n\n def __init__(\n self, models, role, predictor_cls=None, name=None, vpc_config=None, sagemaker_session=None\n ):\n \"\"\"Initialize an SageMaker ``Model`` which can be used to build an\n Inference Pipeline comprising of multiple model containers.\n\n Args:\n models (list[sagemaker.Model]): For using multiple containers to\n build an inference pipeline, you can pass a list of ``sagemaker.Model`` objects\n in the order you want the inference to happen.\n role (str): An AWS IAM role (either name or full ARN). The Amazon\n SageMaker training jobs and APIs that create Amazon SageMaker\n endpoints use this role to access training data and model\n artifacts. After the endpoint is created, the inference code\n might use the IAM role, if it needs to access an AWS resource.\n predictor_cls (callable[string, sagemaker.session.Session]): A\n function to call to create a predictor (default: None). If not\n None, ``deploy`` will return the result of invoking this\n function on the created endpoint name.\n name (str): The model name. If None, a default model name will be\n selected on each ``deploy``.\n vpc_config (dict[str, list[str]]): The VpcConfig set on the model\n (default: None)\n * 'Subnets' (list[str]): List of subnet ids.\n * 'SecurityGroupIds' (list[str]): List of security group ids.\n sagemaker_session (sagemaker.session.Session): A SageMaker Session\n object, used for SageMaker interactions (default: None). If not\n specified, one is created using the default AWS configuration\n chain.\n \"\"\"\n self.models = models\n self.role = role\n self.predictor_cls = predictor_cls\n self.name = name\n self.vpc_config = vpc_config\n self.sagemaker_session = sagemaker_session\n self._model_name = None\n self.endpoint_name = None\n\n def pipeline_container_def(self, instance_type):\n \"\"\"Return a dict created by ``sagemaker.pipeline_container_def()`` for\n deploying this model to a specified instance type.\n\n Subclasses can override this to provide custom container definitions\n for deployment to a specific instance type. Called by ``deploy()``.\n\n Args:\n instance_type (str): The EC2 instance type to deploy this Model to.\n For example, 'ml.p2.xlarge'.\n\n Returns:\n list[dict[str, str]]: A list of container definition objects usable\n with the CreateModel API in the scenario of multiple containers\n (Inference Pipeline).\n \"\"\"\n\n return sagemaker.pipeline_container_def(self.models, instance_type)\n\n def deploy(\n self, initial_instance_count, instance_type, endpoint_name=None, tags=None, wait=True\n ):\n \"\"\"Deploy this ``Model`` to an ``Endpoint`` and optionally return a\n ``Predictor``.\n\n Create a SageMaker ``Model`` and ``EndpointConfig``, and deploy an\n ``Endpoint`` from this ``Model``. If ``self.predictor_cls`` is not None,\n this method returns a the result of invoking ``self.predictor_cls`` on\n the created endpoint name.\n\n The name of the created model is accessible in the ``name`` field of\n this ``Model`` after deploy returns\n\n The name of the created endpoint is accessible in the\n ``endpoint_name`` field of this ``Model`` after deploy returns.\n\n Args:\n initial_instance_count (int): The initial number of instances to run\n in the ``Endpoint`` created from this ``Model``.\n instance_type (str): The EC2 instance type to deploy this Model to.\n For example, 'ml.p2.xlarge'.\n endpoint_name (str): The name of the endpoint to create (default:\n None). If not specified, a unique endpoint name will be created.\n tags (List[dict[str, str]]): The list of tags to attach to this\n specific endpoint.\n wait (bool): Whether the call should wait until the deployment of\n model completes (default: True).\n\n Returns:\n callable[string, sagemaker.session.Session] or None: Invocation of\n ``self.predictor_cls`` on the created endpoint name, if ``self.predictor_cls``\n is not None. Otherwise, return None.\n \"\"\"\n if not self.sagemaker_session:\n self.sagemaker_session = Session()\n\n containers = self.pipeline_container_def(instance_type)\n\n self.name = self.name or name_from_image(containers[0][\"Image\"])\n self.sagemaker_session.create_model(\n self.name, self.role, containers, vpc_config=self.vpc_config\n )\n\n production_variant = sagemaker.production_variant(\n self.name, instance_type, initial_instance_count\n )\n self.endpoint_name = endpoint_name or self.name\n self.sagemaker_session.endpoint_from_production_variants(\n self.endpoint_name, [production_variant], tags, wait=wait\n )\n if self.predictor_cls:\n return self.predictor_cls(self.endpoint_name, self.sagemaker_session)\n return None\n\n def _create_sagemaker_pipeline_model(self, instance_type):\n \"\"\"Create a SageMaker Model Entity\n\n Args:\n instance_type (str): The EC2 instance type that this Model will be\n used for, this is only used to determine if the image needs GPU\n support or not.\n \"\"\"\n if not self.sagemaker_session:\n self.sagemaker_session = Session()\n\n containers = self.pipeline_container_def(instance_type)\n\n self.name = self.name or name_from_image(containers[0][\"Image\"])\n self.sagemaker_session.create_model(\n self.name, self.role, containers, vpc_config=self.vpc_config\n )\n\n def transformer(\n self,\n instance_count,\n instance_type,\n strategy=None,\n assemble_with=None,\n output_path=None,\n output_kms_key=None,\n accept=None,\n env=None,\n max_concurrent_transforms=None,\n max_payload=None,\n tags=None,\n volume_kms_key=None,\n ):\n \"\"\"Return a ``Transformer`` that uses this Model.\n\n Args:\n instance_count (int): Number of EC2 instances to use.\n instance_type (str): Type of EC2 instance to use, for example,\n 'ml.c4.xlarge'.\n strategy (str): The strategy used to decide how to batch records in\n a single request (default: None). Valid values: 'MULTI_RECORD'\n and 'SINGLE_RECORD'.\n assemble_with (str): How the output is assembled (default: None).\n Valid values: 'Line' or 'None'.\n output_path (str): S3 location for saving the transform result. If\n not specified, results are stored to a default bucket.\n output_kms_key (str): Optional. KMS key ID for encrypting the\n transform output (default: None).\n accept (str): The content type accepted by the endpoint deployed\n during the transform job.\n env (dict): Environment variables to be set for use during the\n transform job (default: None).\n max_concurrent_transforms (int): The maximum number of HTTP requests\n to be made to each individual transform container at one time.\n max_payload (int): Maximum size of the payload in a single HTTP\n request to the container in MB.\n tags (list[dict]): List of tags for labeling a transform job. If\n none specified, then the tags used for the training job are used\n for the transform job.\n volume_kms_key (str): Optional. KMS key ID for encrypting the volume\n attached to the ML compute instance (default: None).\n \"\"\"\n self._create_sagemaker_pipeline_model(instance_type)\n\n return Transformer(\n self.name,\n instance_count,\n instance_type,\n strategy=strategy,\n assemble_with=assemble_with,\n output_path=output_path,\n output_kms_key=output_kms_key,\n accept=accept,\n max_concurrent_transforms=max_concurrent_transforms,\n max_payload=max_payload,\n env=env,\n tags=tags,\n base_transform_job_name=self.name,\n volume_kms_key=volume_kms_key,\n sagemaker_session=self.sagemaker_session,\n )\n\n def delete_model(self):\n \"\"\"Delete the SageMaker model backing this pipeline model. This does not\n delete the list of SageMaker models used in multiple containers to build\n the inference pipeline.\n \"\"\"\n\n if self.name is None:\n raise ValueError(\"The SageMaker model must be created before attempting to delete.\")\n\n self.sagemaker_session.delete_model(self.name)\n", "path": "src/sagemaker/pipeline.py"}]} | 3,540 | 501 |
gh_patches_debug_42117 | rasdani/github-patches | git_diff | 3cn-ecn__nantralPlatform-23 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Separer les differentes actions d'edition d'un groupe en plusieurs pages
Il faudrait diviser les actions des pages d'edition en plusieurs sous pages
- [ ] Convertir les pages pour utiliser le template update base
- [ ] Mettre les membres dans une nouvelle page
</issue>
<code>
[start of server/apps/group/views.py]
1 from django.shortcuts import redirect, render
2 from django.views.generic import DetailView, UpdateView, ListView, View
3 from .models import Club, Group, NamedMembership
4 from .forms import NamedMembershipClubFormset
5 from django.contrib import messages
6 from django.contrib.auth.decorators import login_required
7 from django.views.decorators.http import require_http_methods
8 from django.contrib.auth.mixins import UserPassesTestMixin
9
10 from apps.student.models import Student
11 from apps.event.models import Event
12
13 from apps.event.forms import EventGroupFormSet
14
15 class ListClubView(ListView):
16 model = Club
17 template_name = 'group/club_list.html'
18
19
20 class UpdateClubView(UpdateView):
21 model = Club
22 template_name = 'group/club_update.html'
23 fields = ['description', 'admins', 'logo']
24 def get_context_data(self, **kwargs):
25 context = super().get_context_data(**kwargs)
26 memberships = NamedMembership.objects.filter(group=self.object)
27 membersForm = NamedMembershipClubFormset(queryset=memberships)
28 context['members'] = membersForm
29 return context
30
31 class UpdateClubEventsView(UserPassesTestMixin, View):
32 template_name = 'group/club_events_update.html'
33 def test_func(self):
34 group = Group.get_group_by_slug(self.kwargs['group_slug'])
35 return group.is_admin(self.request.user)
36 def get_context_data(self, **kwargs):
37 context = {}
38 context['object'] = Group.get_group_by_slug(kwargs['group_slug'])
39 context['events'] = Event.objects.filter(group=kwargs['group_slug'])
40 context['form'] = EventGroupFormSet(queryset=context['events'])
41 return context
42
43 def get(self, request, group_slug):
44 return render(request, self.template_name, context=self.get_context_data(group_slug=group_slug))
45
46 def post(self, request, group_slug):
47 return edit_events(request, group_slug)
48
49 def delete(self, request, group_slug, event_id):
50 print('Hello')
51 event = Event.objects.delete(group=group_slug, id=event_id)
52 return redirect('group:update-events')
53
54 class DetailClubView(DetailView):
55 model = Club
56 template_name = 'group/club_detail.html'
57 def get_context_data(self, **kwargs):
58 context = super().get_context_data(**kwargs)
59 members = NamedMembership.objects.filter(group=self.object)
60 context['members'] = members
61 return context
62
63 @login_required
64 def add_member(request, group_slug, student_id):
65 """Add a user to a club"""
66 group = Group.get_group_by_slug(group_slug)
67 student = Student.objects.get(id=student_id)
68 if isinstance(Club, group):
69 NamedMembership.objects.create(student=student, group=group)
70
71
72 @require_http_methods(['POST'])
73 @login_required
74 def edit_named_memberships(request, pk):
75 club = Club.objects.get(pk=pk)
76 form = NamedMembershipClubFormset(request.POST)
77 if form.is_valid():
78 members = form.save(commit=False)
79 for member in members:
80 member.group = club
81 member.save()
82 for member in form.deleted_objects:
83 member.delete()
84 messages.success(request, 'Membres modifies')
85 return redirect('group:update', pk)
86 else:
87 messages.warning(request, form.errors)
88 return redirect('group:update', pk)
89
90
91 @login_required
92 def edit_events(request, group_slug):
93 group = Group.get_group_by_slug(group_slug)
94 form = EventGroupFormSet(request.POST)
95 if form.is_valid():
96 events = form.save(commit=False)
97 # Link each event to the group
98 for event in events:
99 event.group = group.slug
100 event.save()
101 # Delete missing events
102 for event in form.deleted_objects:
103 event.delete()
104 messages.success(request, 'Events modifies')
105 return redirect('group:update-events', group_slug)
106 else:
107 messages.warning(request, form.errors)
108 return redirect('group:update-events', group_slug)
109
[end of server/apps/group/views.py]
[start of server/apps/group/urls.py]
1 from django.conf.urls import url
2 from django.urls import path
3
4 from .views import *
5
6 app_name = 'group'
7
8 urlpatterns = [
9 path('<slug:pk>/', DetailClubView.as_view(), name='detail'),
10 path('<slug:pk>/edit', UpdateClubView.as_view(), name='update'),
11 path('<slug:group_slug>/member/add/<slug:user_id>', add_member, name='add-member'),
12 path('<slug:pk>/members/edit', edit_named_memberships, name='editNamedMemberships'),
13 path('', ListClubView.as_view(), name='list'),
14 path('<slug:group_slug>/events/edit', UpdateClubEventsView.as_view(), name='update-events')
15 ]
[end of server/apps/group/urls.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/server/apps/group/urls.py b/server/apps/group/urls.py
--- a/server/apps/group/urls.py
+++ b/server/apps/group/urls.py
@@ -9,7 +9,7 @@
path('<slug:pk>/', DetailClubView.as_view(), name='detail'),
path('<slug:pk>/edit', UpdateClubView.as_view(), name='update'),
path('<slug:group_slug>/member/add/<slug:user_id>', add_member, name='add-member'),
- path('<slug:pk>/members/edit', edit_named_memberships, name='editNamedMemberships'),
path('', ListClubView.as_view(), name='list'),
- path('<slug:group_slug>/events/edit', UpdateClubEventsView.as_view(), name='update-events')
+ path('<slug:group_slug>/events/edit', UpdateGroupEventsView.as_view(), name='update-events'),
+ path('<slug:group_slug>/members/edit', UpdateGroupMembersView.as_view(), name='update-members')
]
\ No newline at end of file
diff --git a/server/apps/group/views.py b/server/apps/group/views.py
--- a/server/apps/group/views.py
+++ b/server/apps/group/views.py
@@ -21,14 +21,8 @@
model = Club
template_name = 'group/club_update.html'
fields = ['description', 'admins', 'logo']
- def get_context_data(self, **kwargs):
- context = super().get_context_data(**kwargs)
- memberships = NamedMembership.objects.filter(group=self.object)
- membersForm = NamedMembershipClubFormset(queryset=memberships)
- context['members'] = membersForm
- return context
-class UpdateClubEventsView(UserPassesTestMixin, View):
+class UpdateGroupEventsView(UserPassesTestMixin, View):
template_name = 'group/club_events_update.html'
def test_func(self):
group = Group.get_group_by_slug(self.kwargs['group_slug'])
@@ -46,10 +40,29 @@
def post(self, request, group_slug):
return edit_events(request, group_slug)
- def delete(self, request, group_slug, event_id):
- print('Hello')
- event = Event.objects.delete(group=group_slug, id=event_id)
- return redirect('group:update-events')
+
+class UpdateGroupMembersView(UserPassesTestMixin, View):
+ template_name = 'group/club_members_update.html'
+ def test_func(self):
+ group = Group.get_group_by_slug(self.kwargs['group_slug'])
+ return group.is_admin(self.request.user)
+
+ def get_context_data(self, **kwargs):
+ context = {}
+ context['object'] = Group.get_group_by_slug(kwargs['group_slug'])
+ if isinstance(context['object'], Club):
+ memberships = NamedMembership.objects.filter(group=context['object'])
+ membersForm = NamedMembershipClubFormset(queryset=memberships)
+ context['members'] = membersForm
+ return context
+
+ def get(self, request, group_slug):
+ return render(request, self.template_name, context=self.get_context_data(group_slug=group_slug))
+
+ def post(self, request, group_slug):
+ return edit_named_memberships(request, group_slug)
+
+
class DetailClubView(DetailView):
model = Club
@@ -71,8 +84,8 @@
@require_http_methods(['POST'])
@login_required
-def edit_named_memberships(request, pk):
- club = Club.objects.get(pk=pk)
+def edit_named_memberships(request, group_slug):
+ club = Club.objects.filter(slug=group_slug).first()
form = NamedMembershipClubFormset(request.POST)
if form.is_valid():
members = form.save(commit=False)
@@ -82,10 +95,10 @@
for member in form.deleted_objects:
member.delete()
messages.success(request, 'Membres modifies')
- return redirect('group:update', pk)
+ return redirect('group:update', club.id)
else:
messages.warning(request, form.errors)
- return redirect('group:update', pk)
+ return redirect('group:update', club.id)
@login_required
| {"golden_diff": "diff --git a/server/apps/group/urls.py b/server/apps/group/urls.py\n--- a/server/apps/group/urls.py\n+++ b/server/apps/group/urls.py\n@@ -9,7 +9,7 @@\n path('<slug:pk>/', DetailClubView.as_view(), name='detail'),\n path('<slug:pk>/edit', UpdateClubView.as_view(), name='update'),\n path('<slug:group_slug>/member/add/<slug:user_id>', add_member, name='add-member'),\n- path('<slug:pk>/members/edit', edit_named_memberships, name='editNamedMemberships'),\n path('', ListClubView.as_view(), name='list'),\n- path('<slug:group_slug>/events/edit', UpdateClubEventsView.as_view(), name='update-events')\n+ path('<slug:group_slug>/events/edit', UpdateGroupEventsView.as_view(), name='update-events'),\n+ path('<slug:group_slug>/members/edit', UpdateGroupMembersView.as_view(), name='update-members')\n ]\n\\ No newline at end of file\ndiff --git a/server/apps/group/views.py b/server/apps/group/views.py\n--- a/server/apps/group/views.py\n+++ b/server/apps/group/views.py\n@@ -21,14 +21,8 @@\n model = Club\n template_name = 'group/club_update.html'\n fields = ['description', 'admins', 'logo']\n- def get_context_data(self, **kwargs):\n- context = super().get_context_data(**kwargs)\n- memberships = NamedMembership.objects.filter(group=self.object)\n- membersForm = NamedMembershipClubFormset(queryset=memberships)\n- context['members'] = membersForm\n- return context\n \n-class UpdateClubEventsView(UserPassesTestMixin, View):\n+class UpdateGroupEventsView(UserPassesTestMixin, View):\n template_name = 'group/club_events_update.html'\n def test_func(self):\n group = Group.get_group_by_slug(self.kwargs['group_slug'])\n@@ -46,10 +40,29 @@\n def post(self, request, group_slug):\n return edit_events(request, group_slug)\n \n- def delete(self, request, group_slug, event_id):\n- print('Hello')\n- event = Event.objects.delete(group=group_slug, id=event_id)\n- return redirect('group:update-events')\n+\n+class UpdateGroupMembersView(UserPassesTestMixin, View):\n+ template_name = 'group/club_members_update.html'\n+ def test_func(self):\n+ group = Group.get_group_by_slug(self.kwargs['group_slug'])\n+ return group.is_admin(self.request.user)\n+\n+ def get_context_data(self, **kwargs):\n+ context = {}\n+ context['object'] = Group.get_group_by_slug(kwargs['group_slug'])\n+ if isinstance(context['object'], Club):\n+ memberships = NamedMembership.objects.filter(group=context['object'])\n+ membersForm = NamedMembershipClubFormset(queryset=memberships)\n+ context['members'] = membersForm\n+ return context\n+\n+ def get(self, request, group_slug):\n+ return render(request, self.template_name, context=self.get_context_data(group_slug=group_slug))\n+ \n+ def post(self, request, group_slug):\n+ return edit_named_memberships(request, group_slug)\n+\n+\n \n class DetailClubView(DetailView):\n model = Club\n@@ -71,8 +84,8 @@\n \n @require_http_methods(['POST'])\n @login_required\n-def edit_named_memberships(request, pk):\n- club = Club.objects.get(pk=pk)\n+def edit_named_memberships(request, group_slug):\n+ club = Club.objects.filter(slug=group_slug).first()\n form = NamedMembershipClubFormset(request.POST)\n if form.is_valid():\n members = form.save(commit=False)\n@@ -82,10 +95,10 @@\n for member in form.deleted_objects:\n member.delete()\n messages.success(request, 'Membres modifies')\n- return redirect('group:update', pk)\n+ return redirect('group:update', club.id)\n else:\n messages.warning(request, form.errors)\n- return redirect('group:update', pk)\n+ return redirect('group:update', club.id)\n \n \n @login_required\n", "issue": "Separer les differentes actions d'edition d'un groupe en plusieurs pages\nIl faudrait diviser les actions des pages d'edition en plusieurs sous pages\r\n\r\n- [ ] Convertir les pages pour utiliser le template update base\r\n- [ ] Mettre les membres dans une nouvelle page\n", "before_files": [{"content": "from django.shortcuts import redirect, render\nfrom django.views.generic import DetailView, UpdateView, ListView, View\nfrom .models import Club, Group, NamedMembership\nfrom .forms import NamedMembershipClubFormset\nfrom django.contrib import messages\nfrom django.contrib.auth.decorators import login_required\nfrom django.views.decorators.http import require_http_methods\nfrom django.contrib.auth.mixins import UserPassesTestMixin\n\nfrom apps.student.models import Student\nfrom apps.event.models import Event\n\nfrom apps.event.forms import EventGroupFormSet\n\nclass ListClubView(ListView):\n model = Club\n template_name = 'group/club_list.html'\n\n\nclass UpdateClubView(UpdateView):\n model = Club\n template_name = 'group/club_update.html'\n fields = ['description', 'admins', 'logo']\n def get_context_data(self, **kwargs):\n context = super().get_context_data(**kwargs)\n memberships = NamedMembership.objects.filter(group=self.object)\n membersForm = NamedMembershipClubFormset(queryset=memberships)\n context['members'] = membersForm\n return context\n\nclass UpdateClubEventsView(UserPassesTestMixin, View):\n template_name = 'group/club_events_update.html'\n def test_func(self):\n group = Group.get_group_by_slug(self.kwargs['group_slug'])\n return group.is_admin(self.request.user)\n def get_context_data(self, **kwargs):\n context = {}\n context['object'] = Group.get_group_by_slug(kwargs['group_slug'])\n context['events'] = Event.objects.filter(group=kwargs['group_slug'])\n context['form'] = EventGroupFormSet(queryset=context['events'])\n return context\n\n def get(self, request, group_slug):\n return render(request, self.template_name, context=self.get_context_data(group_slug=group_slug))\n\n def post(self, request, group_slug):\n return edit_events(request, group_slug)\n\n def delete(self, request, group_slug, event_id):\n print('Hello')\n event = Event.objects.delete(group=group_slug, id=event_id)\n return redirect('group:update-events')\n\nclass DetailClubView(DetailView):\n model = Club\n template_name = 'group/club_detail.html'\n def get_context_data(self, **kwargs):\n context = super().get_context_data(**kwargs)\n members = NamedMembership.objects.filter(group=self.object)\n context['members'] = members\n return context\n\n@login_required\ndef add_member(request, group_slug, student_id):\n \"\"\"Add a user to a club\"\"\"\n group = Group.get_group_by_slug(group_slug)\n student = Student.objects.get(id=student_id)\n if isinstance(Club, group):\n NamedMembership.objects.create(student=student, group=group)\n\n\n@require_http_methods(['POST'])\n@login_required\ndef edit_named_memberships(request, pk):\n club = Club.objects.get(pk=pk)\n form = NamedMembershipClubFormset(request.POST)\n if form.is_valid():\n members = form.save(commit=False)\n for member in members:\n member.group = club\n member.save()\n for member in form.deleted_objects:\n member.delete()\n messages.success(request, 'Membres modifies')\n return redirect('group:update', pk)\n else:\n messages.warning(request, form.errors)\n return redirect('group:update', pk)\n\n\n@login_required\ndef edit_events(request, group_slug):\n group = Group.get_group_by_slug(group_slug)\n form = EventGroupFormSet(request.POST)\n if form.is_valid():\n events = form.save(commit=False)\n # Link each event to the group\n for event in events:\n event.group = group.slug\n event.save()\n # Delete missing events\n for event in form.deleted_objects:\n event.delete()\n messages.success(request, 'Events modifies')\n return redirect('group:update-events', group_slug)\n else:\n messages.warning(request, form.errors)\n return redirect('group:update-events', group_slug)\n", "path": "server/apps/group/views.py"}, {"content": "from django.conf.urls import url\nfrom django.urls import path\n\nfrom .views import *\n\napp_name = 'group'\n\nurlpatterns = [\n path('<slug:pk>/', DetailClubView.as_view(), name='detail'),\n path('<slug:pk>/edit', UpdateClubView.as_view(), name='update'),\n path('<slug:group_slug>/member/add/<slug:user_id>', add_member, name='add-member'),\n path('<slug:pk>/members/edit', edit_named_memberships, name='editNamedMemberships'),\n path('', ListClubView.as_view(), name='list'),\n path('<slug:group_slug>/events/edit', UpdateClubEventsView.as_view(), name='update-events')\n]", "path": "server/apps/group/urls.py"}]} | 1,843 | 909 |
gh_patches_debug_3326 | rasdani/github-patches | git_diff | conda-forge__conda-smithy-144 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Linter: handle environ
Same issue as https://github.com/conda-forge/conda-forge.github.io/issues/93.
Same fix needed: https://github.com/conda-forge/conda-forge.github.io/pull/107/files
Linter: handle environ
Same issue as https://github.com/conda-forge/conda-forge.github.io/issues/93.
Same fix needed: https://github.com/conda-forge/conda-forge.github.io/pull/107/files
</issue>
<code>
[start of conda_smithy/lint_recipe.py]
1 import os
2 import re
3
4 import jinja2
5 import ruamel.yaml
6
7
8 EXPECTED_SECTION_ORDER = ['package', 'source', 'build', 'requirements',
9 'test', 'app', 'about', 'extra']
10
11 REQUIREMENTS_ORDER = ['build', 'run']
12
13
14 class NullUndefined(jinja2.Undefined):
15 def __unicode__(self):
16 return unicode(self._undefined_name)
17
18
19 def get_section(parent, name, lints):
20 section = parent.get(name, {})
21 if not isinstance(section, dict):
22 lints.append('The "{}" section was expected to be a dictionary, but '
23 'got a {}.'.format(name, type(section).__name__))
24 section = {}
25 return section
26
27
28 def lintify(meta, recipe_dir=None):
29 lints = []
30 major_sections = list(meta.keys())
31
32 # If the recipe_dir exists (no guarantee within this function) , we can
33 # find the meta.yaml within it.
34 meta_fname = os.path.join(recipe_dir or '', 'meta.yaml')
35
36 source_section = get_section(meta, 'source', lints)
37 build_section = get_section(meta, 'build', lints)
38 requirements_section = get_section(meta, 'requirements', lints)
39 about_section = get_section(meta, 'about', lints)
40 extra_section = get_section(meta, 'extra', lints)
41
42 # 1: Top level meta.yaml keys should have a specific order.
43 section_order_sorted = sorted(major_sections,
44 key=EXPECTED_SECTION_ORDER.index)
45 if major_sections != section_order_sorted:
46 lints.append('The top level meta keys are in an unexpected order. '
47 'Expecting {}.'.format(section_order_sorted))
48
49 # 2: The about section should have a home, license and summary.
50 for about_item in ['home', 'license', 'summary']:
51 # if the section doesn't exist, or is just empty, lint it.
52 if not about_section.get(about_item, ''):
53 lints.append('The {} item is expected in the about section.'
54 ''.format(about_item))
55
56 # 3: The recipe should have some maintainers.
57 if not extra_section.get('recipe-maintainers', []):
58 lints.append('The recipe could do with some maintainers listed in '
59 'the "extra/recipe-maintainers" section.')
60
61 # 4: The recipe should have some tests.
62 if 'test' not in major_sections:
63 test_files = ['run_test.py', 'run_test.sh', 'run_test.bat',
64 'run_test.pl']
65 a_test_file_exists = (recipe_dir is not None and
66 any(os.path.exists(os.path.join(recipe_dir,
67 test_file))
68 for test_file in test_files))
69 if not a_test_file_exists:
70 lints.append('The recipe must have some tests.')
71
72 # 5: License cannot be 'unknown.'
73 license = about_section.get('license', '').lower()
74 if 'unknown' == license.strip():
75 lints.append('The recipe license cannot be unknown.')
76
77 # 6: Selectors should be in a tidy form.
78 if recipe_dir is not None and os.path.exists(meta_fname):
79 bad_selectors = []
80 # Good selectors look like ".*\s\s#\s[...]"
81 good_selectors_pat = re.compile(r'(.+?)\s{2,}#\s\[(.+)\](?(2).*)$')
82 with open(meta_fname, 'r') as fh:
83 for selector_line in selector_lines(fh):
84 if not good_selectors_pat.match(selector_line):
85 bad_selectors.append(selector_line)
86 if bad_selectors:
87 lints.append('Selectors are suggested to take a '
88 '``<two spaces>#<one space>[<expression>]`` form.')
89
90 # 7: The build section should have a build number.
91 if build_section.get('number', None) is None:
92 lints.append('The recipe must have a `build/number` section.')
93
94 # 8: The build section should be before the run section in requirements.
95 requirements_order_sorted = sorted(requirements_section,
96 key=REQUIREMENTS_ORDER.index)
97 if requirements_section.keys() != requirements_order_sorted:
98 lints.append('The `requirements/build` section should be defined '
99 'before the `requirements/run` section.')
100
101 # 9: Files downloaded should have a hash.
102 if ('url' in source_section and
103 not ({'sha1', 'sha256', 'md5'} & set(source_section.keys()))):
104 lints.append('When defining a source/url please add a sha256, sha1 '
105 'or md5 checksum (sha256 preferably).')
106
107 return lints
108
109
110 def selector_lines(lines):
111 # Using the same pattern defined in conda-build (metadata.py),
112 # we identify selectors.
113 sel_pat = re.compile(r'(.+?)\s*(#.*)?\[(.+)\](?(2).*)$')
114
115 for line in lines:
116 line = line.rstrip()
117 if line.lstrip().startswith('#'):
118 # Don't bother with comment only lines
119 continue
120 m = sel_pat.match(line)
121 if m:
122 m.group(3)
123 yield line
124
125
126 def main(recipe_dir):
127 recipe_dir = os.path.abspath(recipe_dir)
128 recipe_meta = os.path.join(recipe_dir, 'meta.yaml')
129 if not os.path.exists(recipe_dir):
130 raise IOError('Feedstock has no recipe/meta.yaml.')
131
132 env = jinja2.Environment(undefined=NullUndefined)
133
134 with open(recipe_meta, 'r') as fh:
135 content = env.from_string(''.join(fh)).render()
136 meta = ruamel.yaml.load(content, ruamel.yaml.RoundTripLoader)
137 results = lintify(meta, recipe_dir)
138 return results
139
[end of conda_smithy/lint_recipe.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/conda_smithy/lint_recipe.py b/conda_smithy/lint_recipe.py
--- a/conda_smithy/lint_recipe.py
+++ b/conda_smithy/lint_recipe.py
@@ -15,6 +15,11 @@
def __unicode__(self):
return unicode(self._undefined_name)
+ def __getattr__(self, name):
+ return unicode('{}.{}'.format(self, name))
+
+ def __getitem__(self, name):
+ return '{}["{}"]'.format(self, name)
def get_section(parent, name, lints):
section = parent.get(name, {})
| {"golden_diff": "diff --git a/conda_smithy/lint_recipe.py b/conda_smithy/lint_recipe.py\n--- a/conda_smithy/lint_recipe.py\n+++ b/conda_smithy/lint_recipe.py\n@@ -15,6 +15,11 @@\n def __unicode__(self):\n return unicode(self._undefined_name)\n \n+ def __getattr__(self, name):\n+ return unicode('{}.{}'.format(self, name))\n+\n+ def __getitem__(self, name):\n+ return '{}[\"{}\"]'.format(self, name)\n \n def get_section(parent, name, lints):\n section = parent.get(name, {})\n", "issue": "Linter: handle environ\nSame issue as https://github.com/conda-forge/conda-forge.github.io/issues/93.\nSame fix needed: https://github.com/conda-forge/conda-forge.github.io/pull/107/files\n\nLinter: handle environ\nSame issue as https://github.com/conda-forge/conda-forge.github.io/issues/93.\nSame fix needed: https://github.com/conda-forge/conda-forge.github.io/pull/107/files\n\n", "before_files": [{"content": "import os\nimport re\n\nimport jinja2\nimport ruamel.yaml\n\n\nEXPECTED_SECTION_ORDER = ['package', 'source', 'build', 'requirements',\n 'test', 'app', 'about', 'extra']\n\nREQUIREMENTS_ORDER = ['build', 'run']\n\n\nclass NullUndefined(jinja2.Undefined):\n def __unicode__(self):\n return unicode(self._undefined_name)\n\n\ndef get_section(parent, name, lints):\n section = parent.get(name, {})\n if not isinstance(section, dict):\n lints.append('The \"{}\" section was expected to be a dictionary, but '\n 'got a {}.'.format(name, type(section).__name__))\n section = {}\n return section\n\n\ndef lintify(meta, recipe_dir=None):\n lints = []\n major_sections = list(meta.keys())\n\n # If the recipe_dir exists (no guarantee within this function) , we can\n # find the meta.yaml within it.\n meta_fname = os.path.join(recipe_dir or '', 'meta.yaml')\n\n source_section = get_section(meta, 'source', lints)\n build_section = get_section(meta, 'build', lints)\n requirements_section = get_section(meta, 'requirements', lints)\n about_section = get_section(meta, 'about', lints)\n extra_section = get_section(meta, 'extra', lints)\n\n # 1: Top level meta.yaml keys should have a specific order.\n section_order_sorted = sorted(major_sections,\n key=EXPECTED_SECTION_ORDER.index)\n if major_sections != section_order_sorted:\n lints.append('The top level meta keys are in an unexpected order. '\n 'Expecting {}.'.format(section_order_sorted))\n\n # 2: The about section should have a home, license and summary.\n for about_item in ['home', 'license', 'summary']:\n # if the section doesn't exist, or is just empty, lint it.\n if not about_section.get(about_item, ''):\n lints.append('The {} item is expected in the about section.'\n ''.format(about_item))\n\n # 3: The recipe should have some maintainers.\n if not extra_section.get('recipe-maintainers', []):\n lints.append('The recipe could do with some maintainers listed in '\n 'the \"extra/recipe-maintainers\" section.')\n\n # 4: The recipe should have some tests.\n if 'test' not in major_sections:\n test_files = ['run_test.py', 'run_test.sh', 'run_test.bat',\n 'run_test.pl']\n a_test_file_exists = (recipe_dir is not None and\n any(os.path.exists(os.path.join(recipe_dir,\n test_file))\n for test_file in test_files))\n if not a_test_file_exists:\n lints.append('The recipe must have some tests.')\n\n # 5: License cannot be 'unknown.'\n license = about_section.get('license', '').lower()\n if 'unknown' == license.strip():\n lints.append('The recipe license cannot be unknown.')\n\n # 6: Selectors should be in a tidy form.\n if recipe_dir is not None and os.path.exists(meta_fname):\n bad_selectors = []\n # Good selectors look like \".*\\s\\s#\\s[...]\"\n good_selectors_pat = re.compile(r'(.+?)\\s{2,}#\\s\\[(.+)\\](?(2).*)$')\n with open(meta_fname, 'r') as fh:\n for selector_line in selector_lines(fh):\n if not good_selectors_pat.match(selector_line):\n bad_selectors.append(selector_line)\n if bad_selectors:\n lints.append('Selectors are suggested to take a '\n '``<two spaces>#<one space>[<expression>]`` form.')\n\n # 7: The build section should have a build number.\n if build_section.get('number', None) is None:\n lints.append('The recipe must have a `build/number` section.')\n\n # 8: The build section should be before the run section in requirements.\n requirements_order_sorted = sorted(requirements_section,\n key=REQUIREMENTS_ORDER.index)\n if requirements_section.keys() != requirements_order_sorted:\n lints.append('The `requirements/build` section should be defined '\n 'before the `requirements/run` section.')\n\n # 9: Files downloaded should have a hash.\n if ('url' in source_section and\n not ({'sha1', 'sha256', 'md5'} & set(source_section.keys()))):\n lints.append('When defining a source/url please add a sha256, sha1 '\n 'or md5 checksum (sha256 preferably).')\n\n return lints\n\n\ndef selector_lines(lines):\n # Using the same pattern defined in conda-build (metadata.py),\n # we identify selectors.\n sel_pat = re.compile(r'(.+?)\\s*(#.*)?\\[(.+)\\](?(2).*)$')\n\n for line in lines:\n line = line.rstrip()\n if line.lstrip().startswith('#'):\n # Don't bother with comment only lines\n continue\n m = sel_pat.match(line)\n if m:\n m.group(3)\n yield line\n\n\ndef main(recipe_dir):\n recipe_dir = os.path.abspath(recipe_dir)\n recipe_meta = os.path.join(recipe_dir, 'meta.yaml')\n if not os.path.exists(recipe_dir):\n raise IOError('Feedstock has no recipe/meta.yaml.')\n\n env = jinja2.Environment(undefined=NullUndefined)\n\n with open(recipe_meta, 'r') as fh:\n content = env.from_string(''.join(fh)).render()\n meta = ruamel.yaml.load(content, ruamel.yaml.RoundTripLoader)\n results = lintify(meta, recipe_dir)\n return results\n", "path": "conda_smithy/lint_recipe.py"}]} | 2,212 | 142 |
gh_patches_debug_483 | rasdani/github-patches | git_diff | dask__distributed-121 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Wait/sync doesn't break on KeyboardInterrupt
Calling a function like `wait` that uses `sync` can not be broken with `KeyboardInterrupt`. Two questions
1. How does one test keyboard interrupts? Is there a way to simulate the signal?
2. What could be happening here? We are waiting on a threading `Event` when the `KeyboardInterrupt` _should_ interrupt us. https://github.com/blaze/distributed/blob/master/distributed/utils.py#L104
</issue>
<code>
[start of distributed/utils.py]
1 from __future__ import print_function, division, absolute_import
2
3 from collections import Iterable
4 from contextlib import contextmanager
5 import logging
6 import os
7 import re
8 import socket
9 import sys
10 import tempfile
11 import traceback
12
13 from dask import istask
14 from toolz import memoize
15 from tornado import gen
16
17
18 logger = logging.getLogger(__name__)
19
20
21 def funcname(func):
22 """Get the name of a function."""
23 while hasattr(func, 'func'):
24 func = func.func
25 try:
26 return func.__name__
27 except:
28 return str(func)
29
30
31 def get_ip():
32 return [(s.connect(('8.8.8.8', 80)), s.getsockname()[0], s.close())
33 for s in [socket.socket(socket.AF_INET, socket.SOCK_DGRAM)]][0][1]
34
35
36
37 @contextmanager
38 def ignoring(*exceptions):
39 try:
40 yield
41 except exceptions:
42 pass
43
44
45 @gen.coroutine
46 def ignore_exceptions(coroutines, *exceptions):
47 """ Process list of coroutines, ignoring certain exceptions
48
49 >>> coroutines = [cor(...) for ...] # doctest: +SKIP
50 >>> x = yield ignore_exceptions(coroutines, TypeError) # doctest: +SKIP
51 """
52 wait_iterator = gen.WaitIterator(*coroutines)
53 results = []
54 while not wait_iterator.done():
55 with ignoring(*exceptions):
56 result = yield wait_iterator.next()
57 results.append(result)
58 raise gen.Return(results)
59
60
61 @gen.coroutine
62 def All(*args):
63 """ Wait on many tasks at the same time
64
65 Err once any of the tasks err.
66
67 See https://github.com/tornadoweb/tornado/issues/1546
68 """
69 if len(args) == 1 and isinstance(args[0], Iterable):
70 args = args[0]
71 tasks = gen.WaitIterator(*args)
72 results = [None for _ in args]
73 while not tasks.done():
74 result = yield tasks.next()
75 results[tasks.current_index] = result
76 raise gen.Return(results)
77
78
79 def sync(loop, func, *args, **kwargs):
80 """ Run coroutine in loop running in separate thread """
81 if not loop._running:
82 try:
83 return loop.run_sync(lambda: func(*args, **kwargs))
84 except RuntimeError: # loop already running
85 pass
86
87 from threading import Event
88 e = Event()
89 result = [None]
90 error = [False]
91
92 @gen.coroutine
93 def f():
94 try:
95 result[0] = yield gen.maybe_future(func(*args, **kwargs))
96 except Exception as exc:
97 logger.exception(exc)
98 result[0] = exc
99 error[0] = True
100 finally:
101 e.set()
102
103 a = loop.add_callback(f)
104 e.wait()
105 if error[0]:
106 raise result[0]
107 else:
108 return result[0]
109
110
111 @contextmanager
112 def tmp_text(filename, text):
113 fn = os.path.join(tempfile.gettempdir(), filename)
114 with open(fn, 'w') as f:
115 f.write(text)
116
117 try:
118 yield fn
119 finally:
120 if os.path.exists(fn):
121 os.remove(fn)
122
123
124 def clear_queue(q):
125 while not q.empty():
126 q.get_nowait()
127
128
129 def is_kernel():
130 """ Determine if we're running within an IPython kernel
131
132 >>> is_kernel()
133 False
134 """
135 # http://stackoverflow.com/questions/34091701/determine-if-were-in-an-ipython-notebook-session
136 if 'IPython' not in sys.modules: # IPython hasn't been imported
137 return False
138 from IPython import get_ipython
139 # check for `kernel` attribute on the IPython instance
140 return getattr(get_ipython(), 'kernel', None) is not None
141
142
143 def _deps(dsk, arg):
144 """ Get dependencies from keys or tasks
145
146 Helper function for get_dependencies.
147
148 Examples
149 --------
150 >>> inc = lambda x: x + 1
151 >>> add = lambda x, y: x + y
152
153 >>> dsk = {'x': 1, 'y': 2}
154
155 >>> _deps(dsk, 'x')
156 ['x']
157 >>> _deps(dsk, (add, 'x', 1))
158 ['x']
159 >>> _deps(dsk, ['x', 'y'])
160 ['x', 'y']
161 >>> _deps(dsk, {'name': 'x'})
162 ['x']
163 >>> _deps(dsk, (add, 'x', (inc, 'y'))) # doctest: +SKIP
164 ['x', 'y']
165 """
166 if istask(arg):
167 result = []
168 for a in arg[1:]:
169 result.extend(_deps(dsk, a))
170 return result
171 if isinstance(arg, list):
172 return sum([_deps(dsk, a) for a in arg], [])
173 if isinstance(arg, dict):
174 return sum([_deps(dsk, v) for v in arg.values()], [])
175 try:
176 if arg not in dsk:
177 return []
178 except TypeError: # not hashable
179 return []
180 return [arg]
181
182
183 def key_split(s):
184 """
185 >>> key_split('x-1')
186 'x'
187 >>> key_split('x-1-2-3')
188 'x'
189 >>> key_split(('x-2', 1))
190 'x'
191 >>> key_split(None)
192 'Other'
193 """
194 if isinstance(s, tuple):
195 return key_split(s[0])
196 try:
197 return s.split('-', 1)[0]
198 except:
199 return 'Other'
200
201
202 @contextmanager
203 def log_errors():
204 try:
205 yield
206 except gen.Return:
207 raise
208 except Exception as e:
209 logger.exception(e)
210 raise
211
212
213 @memoize
214 def ensure_ip(hostname):
215 """ Ensure that address is an IP address
216
217 >>> ensure_ip('localhost')
218 '127.0.0.1'
219 >>> ensure_ip('123.123.123.123') # pass through IP addresses
220 '123.123.123.123'
221 """
222 if re.match('\d+\.\d+\.\d+\.\d+', hostname): # is IP
223 return hostname
224 else:
225 return socket.gethostbyname(hostname)
226
227
228 def get_traceback():
229 exc_type, exc_value, exc_traceback = sys.exc_info()
230 tb = traceback.format_tb(exc_traceback)
231 tb = [line[:10000] for line in tb]
232 return tb
233
234
235 def truncate_exception(e, n=10000):
236 """ Truncate exception to be about a certain length """
237 if len(str(e)) > n:
238 try:
239 return type(e)("Long error message",
240 str(e)[:n])
241 except:
242 return Exception("Long error message",
243 type(e),
244 str(e)[:n])
245 else:
246 return e
247
248
249 import logging
250 logging.basicConfig(format='%(name)s - %(levelname)s - %(message)s',
251 level=logging.INFO)
252
253 # http://stackoverflow.com/questions/21234772/python-tornado-disable-logging-to-stderr
254 stream = logging.StreamHandler(sys.stderr)
255 stream.setLevel(logging.CRITICAL)
256 logging.getLogger('tornado').addHandler(stream)
257 logging.getLogger('tornado').propagate = False
258
[end of distributed/utils.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/distributed/utils.py b/distributed/utils.py
--- a/distributed/utils.py
+++ b/distributed/utils.py
@@ -101,7 +101,8 @@
e.set()
a = loop.add_callback(f)
- e.wait()
+ while not e.is_set():
+ e.wait(1000000)
if error[0]:
raise result[0]
else:
| {"golden_diff": "diff --git a/distributed/utils.py b/distributed/utils.py\n--- a/distributed/utils.py\n+++ b/distributed/utils.py\n@@ -101,7 +101,8 @@\n e.set()\n \n a = loop.add_callback(f)\n- e.wait()\n+ while not e.is_set():\n+ e.wait(1000000)\n if error[0]:\n raise result[0]\n else:\n", "issue": "Wait/sync doesn't break on KeyboardInterrupt\nCalling a function like `wait` that uses `sync` can not be broken with `KeyboardInterrupt`. Two questions\n1. How does one test keyboard interrupts? Is there a way to simulate the signal?\n2. What could be happening here? We are waiting on a threading `Event` when the `KeyboardInterrupt` _should_ interrupt us. https://github.com/blaze/distributed/blob/master/distributed/utils.py#L104\n\n", "before_files": [{"content": "from __future__ import print_function, division, absolute_import\n\nfrom collections import Iterable\nfrom contextlib import contextmanager\nimport logging\nimport os\nimport re\nimport socket\nimport sys\nimport tempfile\nimport traceback\n\nfrom dask import istask\nfrom toolz import memoize\nfrom tornado import gen\n\n\nlogger = logging.getLogger(__name__)\n\n\ndef funcname(func):\n \"\"\"Get the name of a function.\"\"\"\n while hasattr(func, 'func'):\n func = func.func\n try:\n return func.__name__\n except:\n return str(func)\n\n\ndef get_ip():\n return [(s.connect(('8.8.8.8', 80)), s.getsockname()[0], s.close())\n for s in [socket.socket(socket.AF_INET, socket.SOCK_DGRAM)]][0][1]\n\n\n\n@contextmanager\ndef ignoring(*exceptions):\n try:\n yield\n except exceptions:\n pass\n\n\[email protected]\ndef ignore_exceptions(coroutines, *exceptions):\n \"\"\" Process list of coroutines, ignoring certain exceptions\n\n >>> coroutines = [cor(...) for ...] # doctest: +SKIP\n >>> x = yield ignore_exceptions(coroutines, TypeError) # doctest: +SKIP\n \"\"\"\n wait_iterator = gen.WaitIterator(*coroutines)\n results = []\n while not wait_iterator.done():\n with ignoring(*exceptions):\n result = yield wait_iterator.next()\n results.append(result)\n raise gen.Return(results)\n\n\[email protected]\ndef All(*args):\n \"\"\" Wait on many tasks at the same time\n\n Err once any of the tasks err.\n\n See https://github.com/tornadoweb/tornado/issues/1546\n \"\"\"\n if len(args) == 1 and isinstance(args[0], Iterable):\n args = args[0]\n tasks = gen.WaitIterator(*args)\n results = [None for _ in args]\n while not tasks.done():\n result = yield tasks.next()\n results[tasks.current_index] = result\n raise gen.Return(results)\n\n\ndef sync(loop, func, *args, **kwargs):\n \"\"\" Run coroutine in loop running in separate thread \"\"\"\n if not loop._running:\n try:\n return loop.run_sync(lambda: func(*args, **kwargs))\n except RuntimeError: # loop already running\n pass\n\n from threading import Event\n e = Event()\n result = [None]\n error = [False]\n\n @gen.coroutine\n def f():\n try:\n result[0] = yield gen.maybe_future(func(*args, **kwargs))\n except Exception as exc:\n logger.exception(exc)\n result[0] = exc\n error[0] = True\n finally:\n e.set()\n\n a = loop.add_callback(f)\n e.wait()\n if error[0]:\n raise result[0]\n else:\n return result[0]\n\n\n@contextmanager\ndef tmp_text(filename, text):\n fn = os.path.join(tempfile.gettempdir(), filename)\n with open(fn, 'w') as f:\n f.write(text)\n\n try:\n yield fn\n finally:\n if os.path.exists(fn):\n os.remove(fn)\n\n\ndef clear_queue(q):\n while not q.empty():\n q.get_nowait()\n\n\ndef is_kernel():\n \"\"\" Determine if we're running within an IPython kernel\n\n >>> is_kernel()\n False\n \"\"\"\n # http://stackoverflow.com/questions/34091701/determine-if-were-in-an-ipython-notebook-session\n if 'IPython' not in sys.modules: # IPython hasn't been imported\n return False\n from IPython import get_ipython\n # check for `kernel` attribute on the IPython instance\n return getattr(get_ipython(), 'kernel', None) is not None\n\n\ndef _deps(dsk, arg):\n \"\"\" Get dependencies from keys or tasks\n\n Helper function for get_dependencies.\n\n Examples\n --------\n >>> inc = lambda x: x + 1\n >>> add = lambda x, y: x + y\n\n >>> dsk = {'x': 1, 'y': 2}\n\n >>> _deps(dsk, 'x')\n ['x']\n >>> _deps(dsk, (add, 'x', 1))\n ['x']\n >>> _deps(dsk, ['x', 'y'])\n ['x', 'y']\n >>> _deps(dsk, {'name': 'x'})\n ['x']\n >>> _deps(dsk, (add, 'x', (inc, 'y'))) # doctest: +SKIP\n ['x', 'y']\n \"\"\"\n if istask(arg):\n result = []\n for a in arg[1:]:\n result.extend(_deps(dsk, a))\n return result\n if isinstance(arg, list):\n return sum([_deps(dsk, a) for a in arg], [])\n if isinstance(arg, dict):\n return sum([_deps(dsk, v) for v in arg.values()], [])\n try:\n if arg not in dsk:\n return []\n except TypeError: # not hashable\n return []\n return [arg]\n\n\ndef key_split(s):\n \"\"\"\n >>> key_split('x-1')\n 'x'\n >>> key_split('x-1-2-3')\n 'x'\n >>> key_split(('x-2', 1))\n 'x'\n >>> key_split(None)\n 'Other'\n \"\"\"\n if isinstance(s, tuple):\n return key_split(s[0])\n try:\n return s.split('-', 1)[0]\n except:\n return 'Other'\n\n\n@contextmanager\ndef log_errors():\n try:\n yield\n except gen.Return:\n raise\n except Exception as e:\n logger.exception(e)\n raise\n\n\n@memoize\ndef ensure_ip(hostname):\n \"\"\" Ensure that address is an IP address\n\n >>> ensure_ip('localhost')\n '127.0.0.1'\n >>> ensure_ip('123.123.123.123') # pass through IP addresses\n '123.123.123.123'\n \"\"\"\n if re.match('\\d+\\.\\d+\\.\\d+\\.\\d+', hostname): # is IP\n return hostname\n else:\n return socket.gethostbyname(hostname)\n\n\ndef get_traceback():\n exc_type, exc_value, exc_traceback = sys.exc_info()\n tb = traceback.format_tb(exc_traceback)\n tb = [line[:10000] for line in tb]\n return tb\n\n\ndef truncate_exception(e, n=10000):\n \"\"\" Truncate exception to be about a certain length \"\"\"\n if len(str(e)) > n:\n try:\n return type(e)(\"Long error message\",\n str(e)[:n])\n except:\n return Exception(\"Long error message\",\n type(e),\n str(e)[:n])\n else:\n return e\n\n\nimport logging\nlogging.basicConfig(format='%(name)s - %(levelname)s - %(message)s',\n level=logging.INFO)\n\n# http://stackoverflow.com/questions/21234772/python-tornado-disable-logging-to-stderr\nstream = logging.StreamHandler(sys.stderr)\nstream.setLevel(logging.CRITICAL)\nlogging.getLogger('tornado').addHandler(stream)\nlogging.getLogger('tornado').propagate = False\n", "path": "distributed/utils.py"}]} | 2,929 | 96 |
gh_patches_debug_14088 | rasdani/github-patches | git_diff | biopython__biopython-2943 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Installing on old pythons.
### Setup
I am reporting a problem with Biopython source, and Python 3.5. This stems from the pypi packages not declaring for which versions of python they are compatible (not specifying `python_requires="....",` in the call to `setup()` in `setup.py`.
### Expected behaviour
Trying to install biopython with pip should install a version of biopython that is compatible with python 3.5.
### Actual behaviour
Without a version specified pip will download the latest and then when `setup.py` is invoked the python version is caught and the install exits.
### Steps to reproduce
```pip install biopython
Collecting biopython
Downloading biopython-1.77.tar.gz (16.8 MB)
|████████████████████████████████| 16.8 MB 9.5 MB/s
ERROR: Command errored out with exit status 1:
command: /home/OXFORDNANOLABS/cwright/git/medaka/venv/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-fal177xf/biopython/setup.py'"'"'; __file__='"'"'/tmp/pip-install-fal177xf/biopython/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' egg_info --egg-base /tmp/pip-pip-egg-info-c1oi4si4
cwd: /tmp/pip-install-fal177xf/biopython/
Complete output (1 lines):
Biopython requires Python 3.6 or later. Python 3.5 detected.
----------------------------------------
ERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.
```
</issue>
<code>
[start of setup.py]
1 """setuptools based setup script for Biopython.
2
3 This uses setuptools which is now the standard python mechanism for
4 installing packages. If you have downloaded and uncompressed the
5 Biopython source code, or fetched it from git, for the simplest
6 installation just type the command::
7
8 python setup.py install
9
10 However, you would normally install the latest Biopython release from
11 the PyPI archive with::
12
13 pip install biopython
14
15 For more in-depth instructions, see the installation section of the
16 Biopython manual, linked to from:
17
18 http://biopython.org/wiki/Documentation
19
20 Or, if all else fails, feel free to write to the sign up to the Biopython
21 mailing list and ask for help. See:
22
23 http://biopython.org/wiki/Mailing_lists
24 """
25
26 import sys
27 import os
28
29 try:
30 from setuptools import setup
31 from setuptools import Command
32 from setuptools import Extension
33 except ImportError:
34 sys.exit(
35 "We need the Python library setuptools to be installed. "
36 "Try runnning: python -m ensurepip"
37 )
38
39 if "bdist_wheel" in sys.argv:
40 try:
41 import wheel # noqa: F401
42 except ImportError:
43 sys.exit(
44 "We need both setuptools AND wheel packages installed "
45 "for bdist_wheel to work. Try running: pip install wheel"
46 )
47
48
49 # Make sure we have the right Python version.
50 if sys.version_info[:2] < (3, 6):
51 sys.stderr.write(
52 "Biopython requires Python 3.6 or later. "
53 "Python %d.%d detected.\n" % sys.version_info[:2]
54 )
55 sys.exit(1)
56
57
58 class test_biopython(Command):
59 """Run all of the tests for the package.
60
61 This is a automatic test run class to make distutils kind of act like
62 perl. With this you can do:
63
64 python setup.py build
65 python setup.py install
66 python setup.py test
67
68 """
69
70 description = "Automatically run the test suite for Biopython."
71 user_options = [("offline", None, "Don't run online tests")]
72
73 def initialize_options(self):
74 """No-op, initialise options."""
75 self.offline = None
76
77 def finalize_options(self):
78 """No-op, finalise options."""
79 pass
80
81 def run(self):
82 """Run the tests."""
83 this_dir = os.getcwd()
84
85 # change to the test dir and run the tests
86 os.chdir("Tests")
87 sys.path.insert(0, "")
88 import run_tests
89
90 if self.offline:
91 run_tests.main(["--offline"])
92 else:
93 run_tests.main([])
94
95 # change back to the current directory
96 os.chdir(this_dir)
97
98
99 def can_import(module_name):
100 """Check we can import the requested module."""
101 try:
102 return __import__(module_name)
103 except ImportError:
104 return None
105
106
107 # Using requirements.txt is preferred for an application
108 # (and likely will pin specific version numbers), using
109 # setup.py's install_requires is preferred for a library
110 # (and should try not to be overly narrow with versions).
111 REQUIRES = ["numpy"]
112
113 # --- set up the packages we are going to install
114 # standard biopython packages
115 PACKAGES = [
116 "Bio",
117 "Bio.Affy",
118 "Bio.Align",
119 "Bio.Align.Applications",
120 "Bio.Align.substitution_matrices",
121 "Bio.AlignIO",
122 "Bio.Alphabet",
123 "Bio.Application",
124 "Bio.Blast",
125 "Bio.CAPS",
126 "Bio.Cluster",
127 "Bio.codonalign",
128 "Bio.Compass",
129 "Bio.Crystal",
130 "Bio.Data",
131 "Bio.Emboss",
132 "Bio.Entrez",
133 "Bio.ExPASy",
134 "Bio.FSSP",
135 "Bio.GenBank",
136 "Bio.Geo",
137 "Bio.Graphics",
138 "Bio.Graphics.GenomeDiagram",
139 "Bio.HMM",
140 "Bio.KEGG",
141 "Bio.KEGG.Compound",
142 "Bio.KEGG.Enzyme",
143 "Bio.KEGG.Gene",
144 "Bio.KEGG.Map",
145 "Bio.PDB.mmtf",
146 "Bio.KEGG.KGML",
147 "Bio.Medline",
148 "Bio.motifs",
149 "Bio.motifs.applications",
150 "Bio.motifs.jaspar",
151 "Bio.Nexus",
152 "Bio.NMR",
153 "Bio.Pathway",
154 "Bio.Pathway.Rep",
155 "Bio.PDB",
156 "Bio.phenotype",
157 "Bio.PopGen",
158 "Bio.PopGen.GenePop",
159 "Bio.Restriction",
160 "Bio.SCOP",
161 "Bio.SearchIO",
162 "Bio.SearchIO._legacy",
163 "Bio.SearchIO._model",
164 "Bio.SearchIO.BlastIO",
165 "Bio.SearchIO.HHsuiteIO",
166 "Bio.SearchIO.HmmerIO",
167 "Bio.SearchIO.ExonerateIO",
168 "Bio.SearchIO.InterproscanIO",
169 "Bio.SeqIO",
170 "Bio.SeqUtils",
171 "Bio.Sequencing",
172 "Bio.Sequencing.Applications",
173 "Bio.Statistics",
174 "Bio.SubsMat",
175 "Bio.SVDSuperimposer",
176 "Bio.PDB.QCPSuperimposer",
177 "Bio.SwissProt",
178 "Bio.TogoWS",
179 "Bio.Phylo",
180 "Bio.Phylo.Applications",
181 "Bio.Phylo.PAML",
182 "Bio.UniGene",
183 "Bio.UniProt",
184 "Bio.Wise",
185 # Other top level packages,
186 "BioSQL",
187 ]
188
189 EXTENSIONS = [
190 Extension("Bio.Align._aligners", ["Bio/Align/_aligners.c"]),
191 Extension("Bio.cpairwise2", ["Bio/cpairwise2module.c"]),
192 Extension("Bio.Nexus.cnexus", ["Bio/Nexus/cnexus.c"]),
193 Extension(
194 "Bio.PDB.QCPSuperimposer.qcprotmodule",
195 ["Bio/PDB/QCPSuperimposer/qcprotmodule.c"],
196 ),
197 Extension("Bio.motifs._pwm", ["Bio/motifs/_pwm.c"]),
198 Extension(
199 "Bio.Cluster._cluster", ["Bio/Cluster/cluster.c", "Bio/Cluster/clustermodule.c"]
200 ),
201 Extension("Bio.PDB.kdtrees", ["Bio/PDB/kdtrees.c"]),
202 ]
203
204 # We now define the Biopython version number in Bio/__init__.py
205 # Here we can't use "import Bio" then "Bio.__version__" as that would
206 # tell us the version of Biopython already installed (if any).
207 __version__ = "Undefined"
208 for line in open("Bio/__init__.py"):
209 if line.startswith("__version__"):
210 exec(line.strip())
211
212 # We now load in our reStructuredText README.rst file to pass explicitly in the
213 # metadata, since at time of writing PyPI did not do this for us.
214 #
215 # Must make encoding explicit to avoid any conflict with the local default.
216 # Currently keeping README as ASCII (might switch to UTF8 later if needed).
217 # If any invalid character does appear in README, this will fail and alert us.
218 with open("README.rst", encoding="ascii") as handle:
219 readme_rst = handle.read()
220
221 setup(
222 name="biopython",
223 version=__version__,
224 author="The Biopython Contributors",
225 author_email="[email protected]",
226 url="https://biopython.org/",
227 description="Freely available tools for computational molecular biology.",
228 long_description=readme_rst,
229 project_urls={
230 "Documentation": "https://biopython.org/wiki/Documentation",
231 "Source": "https://github.com/biopython/biopython/",
232 "Tracker": "https://github.com/biopython/biopython/issues",
233 },
234 classifiers=[
235 "Development Status :: 5 - Production/Stable",
236 "Intended Audience :: Developers",
237 "Intended Audience :: Science/Research",
238 "License :: Freely Distributable",
239 # Technically the "Biopython License Agreement" is not OSI approved,
240 # but is almost https://opensource.org/licenses/HPND so might put:
241 # 'License :: OSI Approved',
242 # To resolve this we are moving to dual-licensing with 3-clause BSD:
243 # 'License :: OSI Approved :: BSD License',
244 "Operating System :: OS Independent",
245 "Programming Language :: Python",
246 "Programming Language :: Python :: 3",
247 "Programming Language :: Python :: 3.6",
248 "Programming Language :: Python :: 3.7",
249 "Programming Language :: Python :: 3.8",
250 "Topic :: Scientific/Engineering",
251 "Topic :: Scientific/Engineering :: Bio-Informatics",
252 "Topic :: Software Development :: Libraries :: Python Modules",
253 ],
254 cmdclass={"test": test_biopython},
255 packages=PACKAGES,
256 ext_modules=EXTENSIONS,
257 include_package_data=True, # done via MANIFEST.in under setuptools
258 install_requires=REQUIRES,
259 )
260
[end of setup.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/setup.py b/setup.py
--- a/setup.py
+++ b/setup.py
@@ -47,10 +47,11 @@
# Make sure we have the right Python version.
-if sys.version_info[:2] < (3, 6):
+MIN_PY_VER = (3, 6)
+if sys.version_info[:2] < MIN_PY_VER:
sys.stderr.write(
- "Biopython requires Python 3.6 or later. "
- "Python %d.%d detected.\n" % sys.version_info[:2]
+ ("Biopython requires Python %i.%i or later. " % MIN_PY_VER)
+ + ("Python %d.%d detected.\n" % sys.version_info[:2])
)
sys.exit(1)
@@ -256,4 +257,5 @@
ext_modules=EXTENSIONS,
include_package_data=True, # done via MANIFEST.in under setuptools
install_requires=REQUIRES,
+ python_requires=">=%i.%i" % MIN_PY_VER,
)
| {"golden_diff": "diff --git a/setup.py b/setup.py\n--- a/setup.py\n+++ b/setup.py\n@@ -47,10 +47,11 @@\n \n \n # Make sure we have the right Python version.\n-if sys.version_info[:2] < (3, 6):\n+MIN_PY_VER = (3, 6)\n+if sys.version_info[:2] < MIN_PY_VER:\n sys.stderr.write(\n- \"Biopython requires Python 3.6 or later. \"\n- \"Python %d.%d detected.\\n\" % sys.version_info[:2]\n+ (\"Biopython requires Python %i.%i or later. \" % MIN_PY_VER)\n+ + (\"Python %d.%d detected.\\n\" % sys.version_info[:2])\n )\n sys.exit(1)\n \n@@ -256,4 +257,5 @@\n ext_modules=EXTENSIONS,\n include_package_data=True, # done via MANIFEST.in under setuptools\n install_requires=REQUIRES,\n+ python_requires=\">=%i.%i\" % MIN_PY_VER,\n )\n", "issue": "Installing on old pythons.\n### Setup\r\n\r\nI am reporting a problem with Biopython source, and Python 3.5. This stems from the pypi packages not declaring for which versions of python they are compatible (not specifying `python_requires=\"....\",` in the call to `setup()` in `setup.py`.\r\n\r\n### Expected behaviour\r\n\r\nTrying to install biopython with pip should install a version of biopython that is compatible with python 3.5.\r\n\r\n### Actual behaviour\r\n\r\nWithout a version specified pip will download the latest and then when `setup.py` is invoked the python version is caught and the install exits.\r\n\r\n### Steps to reproduce\r\n\r\n```pip install biopython\r\n\r\nCollecting biopython\r\n Downloading biopython-1.77.tar.gz (16.8 MB)\r\n |\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588| 16.8 MB 9.5 MB/s\r\n ERROR: Command errored out with exit status 1:\r\n command: /home/OXFORDNANOLABS/cwright/git/medaka/venv/bin/python3 -c 'import sys, setuptools, tokenize; sys.argv[0] = '\"'\"'/tmp/pip-install-fal177xf/biopython/setup.py'\"'\"'; __file__='\"'\"'/tmp/pip-install-fal177xf/biopython/setup.py'\"'\"';f=getattr(tokenize, '\"'\"'open'\"'\"', open)(__file__);code=f.read().replace('\"'\"'\\r\\n'\"'\"', '\"'\"'\\n'\"'\"');f.close();exec(compile(code, __file__, '\"'\"'exec'\"'\"'))' egg_info --egg-base /tmp/pip-pip-egg-info-c1oi4si4\r\n cwd: /tmp/pip-install-fal177xf/biopython/\r\n Complete output (1 lines):\r\n Biopython requires Python 3.6 or later. Python 3.5 detected.\r\n ----------------------------------------\r\nERROR: Command errored out with exit status 1: python setup.py egg_info Check the logs for full command output.\r\n```\r\n\n", "before_files": [{"content": "\"\"\"setuptools based setup script for Biopython.\n\nThis uses setuptools which is now the standard python mechanism for\ninstalling packages. If you have downloaded and uncompressed the\nBiopython source code, or fetched it from git, for the simplest\ninstallation just type the command::\n\n python setup.py install\n\nHowever, you would normally install the latest Biopython release from\nthe PyPI archive with::\n\n pip install biopython\n\nFor more in-depth instructions, see the installation section of the\nBiopython manual, linked to from:\n\nhttp://biopython.org/wiki/Documentation\n\nOr, if all else fails, feel free to write to the sign up to the Biopython\nmailing list and ask for help. See:\n\nhttp://biopython.org/wiki/Mailing_lists\n\"\"\"\n\nimport sys\nimport os\n\ntry:\n from setuptools import setup\n from setuptools import Command\n from setuptools import Extension\nexcept ImportError:\n sys.exit(\n \"We need the Python library setuptools to be installed. \"\n \"Try runnning: python -m ensurepip\"\n )\n\nif \"bdist_wheel\" in sys.argv:\n try:\n import wheel # noqa: F401\n except ImportError:\n sys.exit(\n \"We need both setuptools AND wheel packages installed \"\n \"for bdist_wheel to work. Try running: pip install wheel\"\n )\n\n\n# Make sure we have the right Python version.\nif sys.version_info[:2] < (3, 6):\n sys.stderr.write(\n \"Biopython requires Python 3.6 or later. \"\n \"Python %d.%d detected.\\n\" % sys.version_info[:2]\n )\n sys.exit(1)\n\n\nclass test_biopython(Command):\n \"\"\"Run all of the tests for the package.\n\n This is a automatic test run class to make distutils kind of act like\n perl. With this you can do:\n\n python setup.py build\n python setup.py install\n python setup.py test\n\n \"\"\"\n\n description = \"Automatically run the test suite for Biopython.\"\n user_options = [(\"offline\", None, \"Don't run online tests\")]\n\n def initialize_options(self):\n \"\"\"No-op, initialise options.\"\"\"\n self.offline = None\n\n def finalize_options(self):\n \"\"\"No-op, finalise options.\"\"\"\n pass\n\n def run(self):\n \"\"\"Run the tests.\"\"\"\n this_dir = os.getcwd()\n\n # change to the test dir and run the tests\n os.chdir(\"Tests\")\n sys.path.insert(0, \"\")\n import run_tests\n\n if self.offline:\n run_tests.main([\"--offline\"])\n else:\n run_tests.main([])\n\n # change back to the current directory\n os.chdir(this_dir)\n\n\ndef can_import(module_name):\n \"\"\"Check we can import the requested module.\"\"\"\n try:\n return __import__(module_name)\n except ImportError:\n return None\n\n\n# Using requirements.txt is preferred for an application\n# (and likely will pin specific version numbers), using\n# setup.py's install_requires is preferred for a library\n# (and should try not to be overly narrow with versions).\nREQUIRES = [\"numpy\"]\n\n# --- set up the packages we are going to install\n# standard biopython packages\nPACKAGES = [\n \"Bio\",\n \"Bio.Affy\",\n \"Bio.Align\",\n \"Bio.Align.Applications\",\n \"Bio.Align.substitution_matrices\",\n \"Bio.AlignIO\",\n \"Bio.Alphabet\",\n \"Bio.Application\",\n \"Bio.Blast\",\n \"Bio.CAPS\",\n \"Bio.Cluster\",\n \"Bio.codonalign\",\n \"Bio.Compass\",\n \"Bio.Crystal\",\n \"Bio.Data\",\n \"Bio.Emboss\",\n \"Bio.Entrez\",\n \"Bio.ExPASy\",\n \"Bio.FSSP\",\n \"Bio.GenBank\",\n \"Bio.Geo\",\n \"Bio.Graphics\",\n \"Bio.Graphics.GenomeDiagram\",\n \"Bio.HMM\",\n \"Bio.KEGG\",\n \"Bio.KEGG.Compound\",\n \"Bio.KEGG.Enzyme\",\n \"Bio.KEGG.Gene\",\n \"Bio.KEGG.Map\",\n \"Bio.PDB.mmtf\",\n \"Bio.KEGG.KGML\",\n \"Bio.Medline\",\n \"Bio.motifs\",\n \"Bio.motifs.applications\",\n \"Bio.motifs.jaspar\",\n \"Bio.Nexus\",\n \"Bio.NMR\",\n \"Bio.Pathway\",\n \"Bio.Pathway.Rep\",\n \"Bio.PDB\",\n \"Bio.phenotype\",\n \"Bio.PopGen\",\n \"Bio.PopGen.GenePop\",\n \"Bio.Restriction\",\n \"Bio.SCOP\",\n \"Bio.SearchIO\",\n \"Bio.SearchIO._legacy\",\n \"Bio.SearchIO._model\",\n \"Bio.SearchIO.BlastIO\",\n \"Bio.SearchIO.HHsuiteIO\",\n \"Bio.SearchIO.HmmerIO\",\n \"Bio.SearchIO.ExonerateIO\",\n \"Bio.SearchIO.InterproscanIO\",\n \"Bio.SeqIO\",\n \"Bio.SeqUtils\",\n \"Bio.Sequencing\",\n \"Bio.Sequencing.Applications\",\n \"Bio.Statistics\",\n \"Bio.SubsMat\",\n \"Bio.SVDSuperimposer\",\n \"Bio.PDB.QCPSuperimposer\",\n \"Bio.SwissProt\",\n \"Bio.TogoWS\",\n \"Bio.Phylo\",\n \"Bio.Phylo.Applications\",\n \"Bio.Phylo.PAML\",\n \"Bio.UniGene\",\n \"Bio.UniProt\",\n \"Bio.Wise\",\n # Other top level packages,\n \"BioSQL\",\n]\n\nEXTENSIONS = [\n Extension(\"Bio.Align._aligners\", [\"Bio/Align/_aligners.c\"]),\n Extension(\"Bio.cpairwise2\", [\"Bio/cpairwise2module.c\"]),\n Extension(\"Bio.Nexus.cnexus\", [\"Bio/Nexus/cnexus.c\"]),\n Extension(\n \"Bio.PDB.QCPSuperimposer.qcprotmodule\",\n [\"Bio/PDB/QCPSuperimposer/qcprotmodule.c\"],\n ),\n Extension(\"Bio.motifs._pwm\", [\"Bio/motifs/_pwm.c\"]),\n Extension(\n \"Bio.Cluster._cluster\", [\"Bio/Cluster/cluster.c\", \"Bio/Cluster/clustermodule.c\"]\n ),\n Extension(\"Bio.PDB.kdtrees\", [\"Bio/PDB/kdtrees.c\"]),\n]\n\n# We now define the Biopython version number in Bio/__init__.py\n# Here we can't use \"import Bio\" then \"Bio.__version__\" as that would\n# tell us the version of Biopython already installed (if any).\n__version__ = \"Undefined\"\nfor line in open(\"Bio/__init__.py\"):\n if line.startswith(\"__version__\"):\n exec(line.strip())\n\n# We now load in our reStructuredText README.rst file to pass explicitly in the\n# metadata, since at time of writing PyPI did not do this for us.\n#\n# Must make encoding explicit to avoid any conflict with the local default.\n# Currently keeping README as ASCII (might switch to UTF8 later if needed).\n# If any invalid character does appear in README, this will fail and alert us.\nwith open(\"README.rst\", encoding=\"ascii\") as handle:\n readme_rst = handle.read()\n\nsetup(\n name=\"biopython\",\n version=__version__,\n author=\"The Biopython Contributors\",\n author_email=\"[email protected]\",\n url=\"https://biopython.org/\",\n description=\"Freely available tools for computational molecular biology.\",\n long_description=readme_rst,\n project_urls={\n \"Documentation\": \"https://biopython.org/wiki/Documentation\",\n \"Source\": \"https://github.com/biopython/biopython/\",\n \"Tracker\": \"https://github.com/biopython/biopython/issues\",\n },\n classifiers=[\n \"Development Status :: 5 - Production/Stable\",\n \"Intended Audience :: Developers\",\n \"Intended Audience :: Science/Research\",\n \"License :: Freely Distributable\",\n # Technically the \"Biopython License Agreement\" is not OSI approved,\n # but is almost https://opensource.org/licenses/HPND so might put:\n # 'License :: OSI Approved',\n # To resolve this we are moving to dual-licensing with 3-clause BSD:\n # 'License :: OSI Approved :: BSD License',\n \"Operating System :: OS Independent\",\n \"Programming Language :: Python\",\n \"Programming Language :: Python :: 3\",\n \"Programming Language :: Python :: 3.6\",\n \"Programming Language :: Python :: 3.7\",\n \"Programming Language :: Python :: 3.8\",\n \"Topic :: Scientific/Engineering\",\n \"Topic :: Scientific/Engineering :: Bio-Informatics\",\n \"Topic :: Software Development :: Libraries :: Python Modules\",\n ],\n cmdclass={\"test\": test_biopython},\n packages=PACKAGES,\n ext_modules=EXTENSIONS,\n include_package_data=True, # done via MANIFEST.in under setuptools\n install_requires=REQUIRES,\n)\n", "path": "setup.py"}]} | 3,629 | 234 |
gh_patches_debug_38277 | rasdani/github-patches | git_diff | aws__aws-cli-6940 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
`Empty KUBERNETES_EXEC_INFO` warning when running `aws eks get-token`
### Describe the bug
This is likely related to https://github.com/kubernetes/kubectl/issues/1210
Using the newest update contained the in above patch, `kubectl` auth commands run as expected. However any requests to `aws eks get-token` that don't come from `kubectl` itself (or a tool using a similar mechanism) result in the following warning:
```shell
Empty KUBERNETES_EXEC_INFO, defaulting to client.authentication.k8s.io/v1alpha1. This is likely a bug in your Kubernetes client. Please update your Kubernetes client.
```
This might just need some documentation to prevent confusion, but I'm already seeing users run into it and ask. And the usual [reddit suspects](https://www.reddit.com/r/kubernetes/comments/um1wa1/what_is_kubernetes_exec_info_and_why_would_it_be/)
### Expected Behavior
- More detailed warning message?
- Suppression of warnings when an interactive prompt is detected?
- Documentation notes?
### Current Behavior
`aws eks get-token` (with valid credentials)
Output:
```shell
Empty KUBERNETES_EXEC_INFO, defaulting to client.authentication.k8s.io/v1alpha1. This is likely a bug in your Kubernetes client. Please update your Kubernetes client.
<token>
```
### Reproduction Steps
`aws eks get-token`
### Possible Solution
_No response_
### Additional Information/Context
_No response_
### CLI version used
`aws-cli/2.6.3 Python/3.9.12 Darwin/21.4.0 source/arm64 prompt/off`
### Environment details (OS name and version, etc.)
macOS 12.3.1
</issue>
<code>
[start of awscli/customizations/eks/get_token.py]
1 # Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.
2 #
3 # Licensed under the Apache License, Version 2.0 (the "License"). You
4 # may not use this file except in compliance with the License. A copy of
5 # the License is located at
6 #
7 # http://aws.amazon.com/apache2.0/
8 #
9 # or in the "license" file accompanying this file. This file is
10 # distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF
11 # ANY KIND, either express or implied. See the License for the specific
12 # language governing permissions and limitations under the License.
13 import base64
14 import botocore
15 import json
16 import os
17 import sys
18
19 from datetime import datetime, timedelta
20 from botocore.signers import RequestSigner
21 from botocore.model import ServiceId
22
23 from awscli.customizations.commands import BasicCommand
24 from awscli.customizations.utils import uni_print
25
26 AUTH_SERVICE = "sts"
27 AUTH_COMMAND = "GetCallerIdentity"
28 AUTH_API_VERSION = "2011-06-15"
29 AUTH_SIGNING_VERSION = "v4"
30
31 ALPHA_API = "client.authentication.k8s.io/v1alpha1"
32 BETA_API = "client.authentication.k8s.io/v1beta1"
33 V1_API = "client.authentication.k8s.io/v1"
34
35 FULLY_SUPPORTED_API_VERSIONS = [
36 V1_API,
37 BETA_API,
38 ]
39 DEPRECATED_API_VERSIONS = [
40 ALPHA_API,
41 ]
42
43 ERROR_MSG_TPL = (
44 "{0} KUBERNETES_EXEC_INFO, defaulting to {1}. This is likely a "
45 "bug in your Kubernetes client. Please update your Kubernetes "
46 "client."
47 )
48 UNRECOGNIZED_MSG_TPL = (
49 "Unrecognized API version in KUBERNETES_EXEC_INFO, defaulting to "
50 "{0}. This is likely due to an outdated AWS "
51 "CLI. Please update your AWS CLI."
52 )
53 DEPRECATION_MSG_TPL = (
54 "Kubeconfig user entry is using deprecated API version {0}. Run "
55 "'aws eks update-kubeconfig' to update."
56 )
57
58 # Presigned url timeout in seconds
59 URL_TIMEOUT = 60
60
61 TOKEN_EXPIRATION_MINS = 14
62
63 TOKEN_PREFIX = 'k8s-aws-v1.'
64
65 CLUSTER_NAME_HEADER = 'x-k8s-aws-id'
66
67
68 class GetTokenCommand(BasicCommand):
69 NAME = 'get-token'
70
71 DESCRIPTION = (
72 "Get a token for authentication with an Amazon EKS cluster. "
73 "This can be used as an alternative to the "
74 "aws-iam-authenticator."
75 )
76
77 ARG_TABLE = [
78 {
79 'name': 'cluster-name',
80 'help_text': (
81 "Specify the name of the Amazon EKS cluster to create a token for."
82 ),
83 'required': True,
84 },
85 {
86 'name': 'role-arn',
87 'help_text': (
88 "Assume this role for credentials when signing the token."
89 ),
90 'required': False,
91 },
92 ]
93
94 def get_expiration_time(self):
95 token_expiration = datetime.utcnow() + timedelta(
96 minutes=TOKEN_EXPIRATION_MINS
97 )
98 return token_expiration.strftime('%Y-%m-%dT%H:%M:%SZ')
99
100 def _run_main(self, parsed_args, parsed_globals):
101 client_factory = STSClientFactory(self._session)
102 sts_client = client_factory.get_sts_client(
103 region_name=parsed_globals.region, role_arn=parsed_args.role_arn
104 )
105 token = TokenGenerator(sts_client).get_token(parsed_args.cluster_name)
106
107 # By default STS signs the url for 15 minutes so we are creating a
108 # rfc3339 timestamp with expiration in 14 minutes as part of the token, which
109 # is used by some clients (client-go) who will refresh the token after 14 mins
110 token_expiration = self.get_expiration_time()
111
112 full_object = {
113 "kind": "ExecCredential",
114 "apiVersion": self.discover_api_version(),
115 "spec": {},
116 "status": {
117 "expirationTimestamp": token_expiration,
118 "token": token,
119 },
120 }
121
122 uni_print(json.dumps(full_object))
123 uni_print('\n')
124 return 0
125
126 def discover_api_version(self):
127 """
128 Parses the KUBERNETES_EXEC_INFO environment variable and returns the
129 API version. If the environment variable is empty, malformed, or
130 invalid, return the v1alpha1 response and print a message to stderr.
131
132 If the v1alpha1 API is specified explicitly, a message is printed to
133 stderr with instructions to update.
134
135 :return: The client authentication API version
136 :rtype: string
137 """
138 # At the time Kubernetes v1.29 is released upstream (approx Dec 2023),
139 # "v1beta1" will be removed. At or around that time, EKS will likely
140 # support v1.22 through v1.28, in which client API version "v1beta1"
141 # will be supported by all EKS versions.
142 fallback_api_version = ALPHA_API
143
144 error_prefixes = {
145 "error": "Error parsing",
146 "empty": "Empty",
147 }
148
149 exec_info_raw = os.environ.get("KUBERNETES_EXEC_INFO", "")
150 if not exec_info_raw:
151 # All kube clients should be setting this. Otherewise, we'll return
152 # the fallback and write an error.
153 uni_print(
154 ERROR_MSG_TPL.format(
155 error_prefixes["empty"],
156 fallback_api_version,
157 ),
158 sys.stderr,
159 )
160 uni_print("\n", sys.stderr)
161 return fallback_api_version
162 try:
163 exec_info = json.loads(exec_info_raw)
164 except json.JSONDecodeError:
165 # The environment variable was malformed
166 uni_print(
167 ERROR_MSG_TPL.format(
168 error_prefixes["error"],
169 fallback_api_version,
170 ),
171 sys.stderr,
172 )
173 uni_print("\n", sys.stderr)
174 return fallback_api_version
175
176 api_version_raw = exec_info.get("apiVersion")
177 if api_version_raw in FULLY_SUPPORTED_API_VERSIONS:
178 return api_version_raw
179 elif api_version_raw in DEPRECATED_API_VERSIONS:
180 uni_print(DEPRECATION_MSG_TPL.format(ALPHA_API), sys.stderr)
181 uni_print("\n", sys.stderr)
182 return api_version_raw
183 else:
184 uni_print(
185 UNRECOGNIZED_MSG_TPL.format(fallback_api_version),
186 sys.stderr,
187 )
188 uni_print("\n", sys.stderr)
189 return fallback_api_version
190
191
192 class TokenGenerator(object):
193 def __init__(self, sts_client):
194 self._sts_client = sts_client
195
196 def get_token(self, cluster_name):
197 """Generate a presigned url token to pass to kubectl."""
198 url = self._get_presigned_url(cluster_name)
199 token = TOKEN_PREFIX + base64.urlsafe_b64encode(
200 url.encode('utf-8')
201 ).decode('utf-8').rstrip('=')
202 return token
203
204 def _get_presigned_url(self, cluster_name):
205 return self._sts_client.generate_presigned_url(
206 'get_caller_identity',
207 Params={'ClusterName': cluster_name},
208 ExpiresIn=URL_TIMEOUT,
209 HttpMethod='GET',
210 )
211
212
213 class STSClientFactory(object):
214 def __init__(self, session):
215 self._session = session
216
217 def get_sts_client(self, region_name=None, role_arn=None):
218 client_kwargs = {'region_name': region_name}
219 if role_arn is not None:
220 creds = self._get_role_credentials(region_name, role_arn)
221 client_kwargs['aws_access_key_id'] = creds['AccessKeyId']
222 client_kwargs['aws_secret_access_key'] = creds['SecretAccessKey']
223 client_kwargs['aws_session_token'] = creds['SessionToken']
224 sts = self._session.create_client('sts', **client_kwargs)
225 self._register_cluster_name_handlers(sts)
226 return sts
227
228 def _get_role_credentials(self, region_name, role_arn):
229 sts = self._session.create_client('sts', region_name)
230 return sts.assume_role(
231 RoleArn=role_arn, RoleSessionName='EKSGetTokenAuth'
232 )['Credentials']
233
234 def _register_cluster_name_handlers(self, sts_client):
235 sts_client.meta.events.register(
236 'provide-client-params.sts.GetCallerIdentity',
237 self._retrieve_cluster_name,
238 )
239 sts_client.meta.events.register(
240 'before-sign.sts.GetCallerIdentity',
241 self._inject_cluster_name_header,
242 )
243
244 def _retrieve_cluster_name(self, params, context, **kwargs):
245 if 'ClusterName' in params:
246 context['eks_cluster'] = params.pop('ClusterName')
247
248 def _inject_cluster_name_header(self, request, **kwargs):
249 if 'eks_cluster' in request.context:
250 request.headers[CLUSTER_NAME_HEADER] = request.context[
251 'eks_cluster'
252 ]
253
[end of awscli/customizations/eks/get_token.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/awscli/customizations/eks/get_token.py b/awscli/customizations/eks/get_token.py
--- a/awscli/customizations/eks/get_token.py
+++ b/awscli/customizations/eks/get_token.py
@@ -126,8 +126,8 @@
def discover_api_version(self):
"""
Parses the KUBERNETES_EXEC_INFO environment variable and returns the
- API version. If the environment variable is empty, malformed, or
- invalid, return the v1alpha1 response and print a message to stderr.
+ API version. If the environment variable is malformed or invalid,
+ return the v1beta1 response and print a message to stderr.
If the v1alpha1 API is specified explicitly, a message is printed to
stderr with instructions to update.
@@ -139,7 +139,7 @@
# "v1beta1" will be removed. At or around that time, EKS will likely
# support v1.22 through v1.28, in which client API version "v1beta1"
# will be supported by all EKS versions.
- fallback_api_version = ALPHA_API
+ fallback_api_version = BETA_API
error_prefixes = {
"error": "Error parsing",
@@ -148,16 +148,12 @@
exec_info_raw = os.environ.get("KUBERNETES_EXEC_INFO", "")
if not exec_info_raw:
- # All kube clients should be setting this. Otherewise, we'll return
- # the fallback and write an error.
- uni_print(
- ERROR_MSG_TPL.format(
- error_prefixes["empty"],
- fallback_api_version,
- ),
- sys.stderr,
- )
- uni_print("\n", sys.stderr)
+ # All kube clients should be setting this, but client-go clients
+ # (kubectl, kubelet, etc) < 1.20 were not setting this if the API
+ # version defined in the kubeconfig was not v1alpha1.
+ #
+ # This was changed in kubernetes/kubernetes#95489 so that
+ # KUBERNETES_EXEC_INFO is always provided
return fallback_api_version
try:
exec_info = json.loads(exec_info_raw)
@@ -177,7 +173,7 @@
if api_version_raw in FULLY_SUPPORTED_API_VERSIONS:
return api_version_raw
elif api_version_raw in DEPRECATED_API_VERSIONS:
- uni_print(DEPRECATION_MSG_TPL.format(ALPHA_API), sys.stderr)
+ uni_print(DEPRECATION_MSG_TPL.format(api_version_raw), sys.stderr)
uni_print("\n", sys.stderr)
return api_version_raw
else:
| {"golden_diff": "diff --git a/awscli/customizations/eks/get_token.py b/awscli/customizations/eks/get_token.py\n--- a/awscli/customizations/eks/get_token.py\n+++ b/awscli/customizations/eks/get_token.py\n@@ -126,8 +126,8 @@\n def discover_api_version(self):\n \"\"\"\n Parses the KUBERNETES_EXEC_INFO environment variable and returns the\n- API version. If the environment variable is empty, malformed, or\n- invalid, return the v1alpha1 response and print a message to stderr.\n+ API version. If the environment variable is malformed or invalid,\n+ return the v1beta1 response and print a message to stderr.\n \n If the v1alpha1 API is specified explicitly, a message is printed to\n stderr with instructions to update.\n@@ -139,7 +139,7 @@\n # \"v1beta1\" will be removed. At or around that time, EKS will likely\n # support v1.22 through v1.28, in which client API version \"v1beta1\"\n # will be supported by all EKS versions.\n- fallback_api_version = ALPHA_API\n+ fallback_api_version = BETA_API\n \n error_prefixes = {\n \"error\": \"Error parsing\",\n@@ -148,16 +148,12 @@\n \n exec_info_raw = os.environ.get(\"KUBERNETES_EXEC_INFO\", \"\")\n if not exec_info_raw:\n- # All kube clients should be setting this. Otherewise, we'll return\n- # the fallback and write an error.\n- uni_print(\n- ERROR_MSG_TPL.format(\n- error_prefixes[\"empty\"],\n- fallback_api_version,\n- ),\n- sys.stderr,\n- )\n- uni_print(\"\\n\", sys.stderr)\n+ # All kube clients should be setting this, but client-go clients\n+ # (kubectl, kubelet, etc) < 1.20 were not setting this if the API\n+ # version defined in the kubeconfig was not v1alpha1.\n+ #\n+ # This was changed in kubernetes/kubernetes#95489 so that\n+ # KUBERNETES_EXEC_INFO is always provided\n return fallback_api_version\n try:\n exec_info = json.loads(exec_info_raw)\n@@ -177,7 +173,7 @@\n if api_version_raw in FULLY_SUPPORTED_API_VERSIONS:\n return api_version_raw\n elif api_version_raw in DEPRECATED_API_VERSIONS:\n- uni_print(DEPRECATION_MSG_TPL.format(ALPHA_API), sys.stderr)\n+ uni_print(DEPRECATION_MSG_TPL.format(api_version_raw), sys.stderr)\n uni_print(\"\\n\", sys.stderr)\n return api_version_raw\n else:\n", "issue": "`Empty KUBERNETES_EXEC_INFO` warning when running `aws eks get-token`\n### Describe the bug\n\nThis is likely related to https://github.com/kubernetes/kubectl/issues/1210\r\n\r\nUsing the newest update contained the in above patch, `kubectl` auth commands run as expected. However any requests to `aws eks get-token` that don't come from `kubectl` itself (or a tool using a similar mechanism) result in the following warning:\r\n```shell\r\nEmpty KUBERNETES_EXEC_INFO, defaulting to client.authentication.k8s.io/v1alpha1. This is likely a bug in your Kubernetes client. Please update your Kubernetes client.\r\n```\r\nThis might just need some documentation to prevent confusion, but I'm already seeing users run into it and ask. And the usual [reddit suspects](https://www.reddit.com/r/kubernetes/comments/um1wa1/what_is_kubernetes_exec_info_and_why_would_it_be/)\n\n### Expected Behavior\n\n- More detailed warning message? \r\n- Suppression of warnings when an interactive prompt is detected?\r\n- Documentation notes?\n\n### Current Behavior\n\n`aws eks get-token` (with valid credentials)\r\nOutput:\r\n```shell\r\nEmpty KUBERNETES_EXEC_INFO, defaulting to client.authentication.k8s.io/v1alpha1. This is likely a bug in your Kubernetes client. Please update your Kubernetes client.\r\n<token>\r\n```\n\n### Reproduction Steps\n\n`aws eks get-token`\n\n### Possible Solution\n\n_No response_\n\n### Additional Information/Context\n\n_No response_\n\n### CLI version used\n\n`aws-cli/2.6.3 Python/3.9.12 Darwin/21.4.0 source/arm64 prompt/off`\n\n### Environment details (OS name and version, etc.)\n\nmacOS 12.3.1\n", "before_files": [{"content": "# Copyright 2019 Amazon.com, Inc. or its affiliates. All Rights Reserved.\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\"). You\n# may not use this file except in compliance with the License. A copy of\n# the License is located at\n#\n# http://aws.amazon.com/apache2.0/\n#\n# or in the \"license\" file accompanying this file. This file is\n# distributed on an \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF\n# ANY KIND, either express or implied. See the License for the specific\n# language governing permissions and limitations under the License.\nimport base64\nimport botocore\nimport json\nimport os\nimport sys\n\nfrom datetime import datetime, timedelta\nfrom botocore.signers import RequestSigner\nfrom botocore.model import ServiceId\n\nfrom awscli.customizations.commands import BasicCommand\nfrom awscli.customizations.utils import uni_print\n\nAUTH_SERVICE = \"sts\"\nAUTH_COMMAND = \"GetCallerIdentity\"\nAUTH_API_VERSION = \"2011-06-15\"\nAUTH_SIGNING_VERSION = \"v4\"\n\nALPHA_API = \"client.authentication.k8s.io/v1alpha1\"\nBETA_API = \"client.authentication.k8s.io/v1beta1\"\nV1_API = \"client.authentication.k8s.io/v1\"\n\nFULLY_SUPPORTED_API_VERSIONS = [\n V1_API,\n BETA_API,\n]\nDEPRECATED_API_VERSIONS = [\n ALPHA_API,\n]\n\nERROR_MSG_TPL = (\n \"{0} KUBERNETES_EXEC_INFO, defaulting to {1}. This is likely a \"\n \"bug in your Kubernetes client. Please update your Kubernetes \"\n \"client.\"\n)\nUNRECOGNIZED_MSG_TPL = (\n \"Unrecognized API version in KUBERNETES_EXEC_INFO, defaulting to \"\n \"{0}. This is likely due to an outdated AWS \"\n \"CLI. Please update your AWS CLI.\"\n)\nDEPRECATION_MSG_TPL = (\n \"Kubeconfig user entry is using deprecated API version {0}. Run \"\n \"'aws eks update-kubeconfig' to update.\"\n)\n\n# Presigned url timeout in seconds\nURL_TIMEOUT = 60\n\nTOKEN_EXPIRATION_MINS = 14\n\nTOKEN_PREFIX = 'k8s-aws-v1.'\n\nCLUSTER_NAME_HEADER = 'x-k8s-aws-id'\n\n\nclass GetTokenCommand(BasicCommand):\n NAME = 'get-token'\n\n DESCRIPTION = (\n \"Get a token for authentication with an Amazon EKS cluster. \"\n \"This can be used as an alternative to the \"\n \"aws-iam-authenticator.\"\n )\n\n ARG_TABLE = [\n {\n 'name': 'cluster-name',\n 'help_text': (\n \"Specify the name of the Amazon EKS cluster to create a token for.\"\n ),\n 'required': True,\n },\n {\n 'name': 'role-arn',\n 'help_text': (\n \"Assume this role for credentials when signing the token.\"\n ),\n 'required': False,\n },\n ]\n\n def get_expiration_time(self):\n token_expiration = datetime.utcnow() + timedelta(\n minutes=TOKEN_EXPIRATION_MINS\n )\n return token_expiration.strftime('%Y-%m-%dT%H:%M:%SZ')\n\n def _run_main(self, parsed_args, parsed_globals):\n client_factory = STSClientFactory(self._session)\n sts_client = client_factory.get_sts_client(\n region_name=parsed_globals.region, role_arn=parsed_args.role_arn\n )\n token = TokenGenerator(sts_client).get_token(parsed_args.cluster_name)\n\n # By default STS signs the url for 15 minutes so we are creating a\n # rfc3339 timestamp with expiration in 14 minutes as part of the token, which\n # is used by some clients (client-go) who will refresh the token after 14 mins\n token_expiration = self.get_expiration_time()\n\n full_object = {\n \"kind\": \"ExecCredential\",\n \"apiVersion\": self.discover_api_version(),\n \"spec\": {},\n \"status\": {\n \"expirationTimestamp\": token_expiration,\n \"token\": token,\n },\n }\n\n uni_print(json.dumps(full_object))\n uni_print('\\n')\n return 0\n\n def discover_api_version(self):\n \"\"\"\n Parses the KUBERNETES_EXEC_INFO environment variable and returns the\n API version. If the environment variable is empty, malformed, or\n invalid, return the v1alpha1 response and print a message to stderr.\n\n If the v1alpha1 API is specified explicitly, a message is printed to\n stderr with instructions to update.\n\n :return: The client authentication API version\n :rtype: string\n \"\"\"\n # At the time Kubernetes v1.29 is released upstream (approx Dec 2023),\n # \"v1beta1\" will be removed. At or around that time, EKS will likely\n # support v1.22 through v1.28, in which client API version \"v1beta1\"\n # will be supported by all EKS versions.\n fallback_api_version = ALPHA_API\n\n error_prefixes = {\n \"error\": \"Error parsing\",\n \"empty\": \"Empty\",\n }\n\n exec_info_raw = os.environ.get(\"KUBERNETES_EXEC_INFO\", \"\")\n if not exec_info_raw:\n # All kube clients should be setting this. Otherewise, we'll return\n # the fallback and write an error.\n uni_print(\n ERROR_MSG_TPL.format(\n error_prefixes[\"empty\"],\n fallback_api_version,\n ),\n sys.stderr,\n )\n uni_print(\"\\n\", sys.stderr)\n return fallback_api_version\n try:\n exec_info = json.loads(exec_info_raw)\n except json.JSONDecodeError:\n # The environment variable was malformed\n uni_print(\n ERROR_MSG_TPL.format(\n error_prefixes[\"error\"],\n fallback_api_version,\n ),\n sys.stderr,\n )\n uni_print(\"\\n\", sys.stderr)\n return fallback_api_version\n\n api_version_raw = exec_info.get(\"apiVersion\")\n if api_version_raw in FULLY_SUPPORTED_API_VERSIONS:\n return api_version_raw\n elif api_version_raw in DEPRECATED_API_VERSIONS:\n uni_print(DEPRECATION_MSG_TPL.format(ALPHA_API), sys.stderr)\n uni_print(\"\\n\", sys.stderr)\n return api_version_raw\n else:\n uni_print(\n UNRECOGNIZED_MSG_TPL.format(fallback_api_version),\n sys.stderr,\n )\n uni_print(\"\\n\", sys.stderr)\n return fallback_api_version\n\n\nclass TokenGenerator(object):\n def __init__(self, sts_client):\n self._sts_client = sts_client\n\n def get_token(self, cluster_name):\n \"\"\"Generate a presigned url token to pass to kubectl.\"\"\"\n url = self._get_presigned_url(cluster_name)\n token = TOKEN_PREFIX + base64.urlsafe_b64encode(\n url.encode('utf-8')\n ).decode('utf-8').rstrip('=')\n return token\n\n def _get_presigned_url(self, cluster_name):\n return self._sts_client.generate_presigned_url(\n 'get_caller_identity',\n Params={'ClusterName': cluster_name},\n ExpiresIn=URL_TIMEOUT,\n HttpMethod='GET',\n )\n\n\nclass STSClientFactory(object):\n def __init__(self, session):\n self._session = session\n\n def get_sts_client(self, region_name=None, role_arn=None):\n client_kwargs = {'region_name': region_name}\n if role_arn is not None:\n creds = self._get_role_credentials(region_name, role_arn)\n client_kwargs['aws_access_key_id'] = creds['AccessKeyId']\n client_kwargs['aws_secret_access_key'] = creds['SecretAccessKey']\n client_kwargs['aws_session_token'] = creds['SessionToken']\n sts = self._session.create_client('sts', **client_kwargs)\n self._register_cluster_name_handlers(sts)\n return sts\n\n def _get_role_credentials(self, region_name, role_arn):\n sts = self._session.create_client('sts', region_name)\n return sts.assume_role(\n RoleArn=role_arn, RoleSessionName='EKSGetTokenAuth'\n )['Credentials']\n\n def _register_cluster_name_handlers(self, sts_client):\n sts_client.meta.events.register(\n 'provide-client-params.sts.GetCallerIdentity',\n self._retrieve_cluster_name,\n )\n sts_client.meta.events.register(\n 'before-sign.sts.GetCallerIdentity',\n self._inject_cluster_name_header,\n )\n\n def _retrieve_cluster_name(self, params, context, **kwargs):\n if 'ClusterName' in params:\n context['eks_cluster'] = params.pop('ClusterName')\n\n def _inject_cluster_name_header(self, request, **kwargs):\n if 'eks_cluster' in request.context:\n request.headers[CLUSTER_NAME_HEADER] = request.context[\n 'eks_cluster'\n ]\n", "path": "awscli/customizations/eks/get_token.py"}]} | 3,534 | 613 |
gh_patches_debug_36570 | rasdani/github-patches | git_diff | pyca__cryptography-837 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
cffi module names
Hi!
hazmat/bindings/utils.py already sets a modulename for ffi.verify.
However, hazmat/primitives/constant_time.py and hazmat/primitives/padding.py don't. Please set it there as well, this will help with packaging cffi.
Thanks!
</issue>
<code>
[start of cryptography/hazmat/primitives/constant_time.py]
1 # Licensed under the Apache License, Version 2.0 (the "License");
2 # you may not use this file except in compliance with the License.
3 # You may obtain a copy of the License at
4 #
5 # http://www.apache.org/licenses/LICENSE-2.0
6 #
7 # Unless required by applicable law or agreed to in writing, software
8 # distributed under the License is distributed on an "AS IS" BASIS,
9 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
10 # implied.
11 # See the License for the specific language governing permissions and
12 # limitations under the License.
13
14 from __future__ import absolute_import, division, print_function
15
16 import cffi
17
18 import six
19
20
21 _ffi = cffi.FFI()
22 _ffi.cdef("""
23 uint8_t Cryptography_constant_time_bytes_eq(uint8_t *, size_t, uint8_t *,
24 size_t);
25 """)
26 _lib = _ffi.verify(
27 """
28 uint8_t Cryptography_constant_time_bytes_eq(uint8_t *a, size_t len_a,
29 uint8_t *b, size_t len_b) {
30 size_t i = 0;
31 uint8_t mismatch = 0;
32 if (len_a != len_b) {
33 return 0;
34 }
35 for (i = 0; i < len_a; i++) {
36 mismatch |= a[i] ^ b[i];
37 }
38
39 /* Make sure any bits set are copied to the lowest bit */
40 mismatch |= mismatch >> 4;
41 mismatch |= mismatch >> 2;
42 mismatch |= mismatch >> 1;
43 /* Now check the low bit to see if it's set */
44 return (mismatch & 1) == 0;
45 }
46 """,
47 ext_package="cryptography",
48 )
49
50
51 def bytes_eq(a, b):
52 if isinstance(a, six.text_type) or isinstance(b, six.text_type):
53 raise TypeError("Unicode-objects must be encoded before comparing")
54
55 return _lib.Cryptography_constant_time_bytes_eq(a, len(a), b, len(b)) == 1
56
[end of cryptography/hazmat/primitives/constant_time.py]
[start of cryptography/hazmat/primitives/padding.py]
1 # Licensed under the Apache License, Version 2.0 (the "License");
2 # you may not use this file except in compliance with the License.
3 # You may obtain a copy of the License at
4 #
5 # http://www.apache.org/licenses/LICENSE-2.0
6 #
7 # Unless required by applicable law or agreed to in writing, software
8 # distributed under the License is distributed on an "AS IS" BASIS,
9 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or
10 # implied.
11 # See the License for the specific language governing permissions and
12 # limitations under the License.
13
14 from __future__ import absolute_import, division, print_function
15
16 import cffi
17
18 import six
19
20 from cryptography import utils
21 from cryptography.hazmat.primitives import interfaces
22
23
24 _ffi = cffi.FFI()
25 _ffi.cdef("""
26 uint8_t Cryptography_check_pkcs7_padding(const uint8_t *, uint8_t);
27 """)
28 _lib = _ffi.verify(
29 """
30 /* Returns the value of the input with the most-significant-bit copied to all
31 of the bits. */
32 static uint8_t Cryptography_DUPLICATE_MSB_TO_ALL(uint8_t a) {
33 return (1 - (a >> (sizeof(uint8_t) * 8 - 1))) - 1;
34 }
35
36 /* This returns 0xFF if a < b else 0x00, but does so in a constant time
37 fashion */
38 static uint8_t Cryptography_constant_time_lt(uint8_t a, uint8_t b) {
39 a -= b;
40 return Cryptography_DUPLICATE_MSB_TO_ALL(a);
41 }
42
43 uint8_t Cryptography_check_pkcs7_padding(const uint8_t *data,
44 uint8_t block_len) {
45 uint8_t i;
46 uint8_t pad_size = data[block_len - 1];
47 uint8_t mismatch = 0;
48 for (i = 0; i < block_len; i++) {
49 unsigned int mask = Cryptography_constant_time_lt(i, pad_size);
50 uint8_t b = data[block_len - 1 - i];
51 mismatch |= (mask & (pad_size ^ b));
52 }
53
54 /* Check to make sure the pad_size was within the valid range. */
55 mismatch |= ~Cryptography_constant_time_lt(0, pad_size);
56 mismatch |= Cryptography_constant_time_lt(block_len, pad_size);
57
58 /* Make sure any bits set are copied to the lowest bit */
59 mismatch |= mismatch >> 4;
60 mismatch |= mismatch >> 2;
61 mismatch |= mismatch >> 1;
62 /* Now check the low bit to see if it's set */
63 return (mismatch & 1) == 0;
64 }
65 """,
66 ext_package="cryptography",
67 )
68
69
70 class PKCS7(object):
71 def __init__(self, block_size):
72 if not (0 <= block_size < 256):
73 raise ValueError("block_size must be in range(0, 256)")
74
75 if block_size % 8 != 0:
76 raise ValueError("block_size must be a multiple of 8")
77
78 self.block_size = block_size
79
80 def padder(self):
81 return _PKCS7PaddingContext(self.block_size)
82
83 def unpadder(self):
84 return _PKCS7UnpaddingContext(self.block_size)
85
86
87 @utils.register_interface(interfaces.PaddingContext)
88 class _PKCS7PaddingContext(object):
89 def __init__(self, block_size):
90 self.block_size = block_size
91 # TODO: more copies than necessary, we should use zero-buffer (#193)
92 self._buffer = b""
93
94 def update(self, data):
95 if self._buffer is None:
96 raise ValueError("Context was already finalized")
97
98 if isinstance(data, six.text_type):
99 raise TypeError("Unicode-objects must be encoded before padding")
100
101 self._buffer += data
102
103 finished_blocks = len(self._buffer) // (self.block_size // 8)
104
105 result = self._buffer[:finished_blocks * (self.block_size // 8)]
106 self._buffer = self._buffer[finished_blocks * (self.block_size // 8):]
107
108 return result
109
110 def finalize(self):
111 if self._buffer is None:
112 raise ValueError("Context was already finalized")
113
114 pad_size = self.block_size // 8 - len(self._buffer)
115 result = self._buffer + six.int2byte(pad_size) * pad_size
116 self._buffer = None
117 return result
118
119
120 @utils.register_interface(interfaces.PaddingContext)
121 class _PKCS7UnpaddingContext(object):
122 def __init__(self, block_size):
123 self.block_size = block_size
124 # TODO: more copies than necessary, we should use zero-buffer (#193)
125 self._buffer = b""
126
127 def update(self, data):
128 if self._buffer is None:
129 raise ValueError("Context was already finalized")
130
131 if isinstance(data, six.text_type):
132 raise TypeError("Unicode-objects must be encoded before unpadding")
133
134 self._buffer += data
135
136 finished_blocks = max(
137 len(self._buffer) // (self.block_size // 8) - 1,
138 0
139 )
140
141 result = self._buffer[:finished_blocks * (self.block_size // 8)]
142 self._buffer = self._buffer[finished_blocks * (self.block_size // 8):]
143
144 return result
145
146 def finalize(self):
147 if self._buffer is None:
148 raise ValueError("Context was already finalized")
149
150 if len(self._buffer) != self.block_size // 8:
151 raise ValueError("Invalid padding bytes")
152
153 valid = _lib.Cryptography_check_pkcs7_padding(
154 self._buffer, self.block_size // 8
155 )
156
157 if not valid:
158 raise ValueError("Invalid padding bytes")
159
160 pad_size = six.indexbytes(self._buffer, -1)
161 res = self._buffer[:-pad_size]
162 self._buffer = None
163 return res
164
[end of cryptography/hazmat/primitives/padding.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/cryptography/hazmat/primitives/constant_time.py b/cryptography/hazmat/primitives/constant_time.py
--- a/cryptography/hazmat/primitives/constant_time.py
+++ b/cryptography/hazmat/primitives/constant_time.py
@@ -13,18 +13,20 @@
from __future__ import absolute_import, division, print_function
+import sys
+
import cffi
import six
+from cryptography.hazmat.bindings.utils import _create_modulename
-_ffi = cffi.FFI()
-_ffi.cdef("""
+TYPES = """
uint8_t Cryptography_constant_time_bytes_eq(uint8_t *, size_t, uint8_t *,
size_t);
-""")
-_lib = _ffi.verify(
- """
+"""
+
+FUNCTIONS = """
uint8_t Cryptography_constant_time_bytes_eq(uint8_t *a, size_t len_a,
uint8_t *b, size_t len_b) {
size_t i = 0;
@@ -43,7 +45,13 @@
/* Now check the low bit to see if it's set */
return (mismatch & 1) == 0;
}
-""",
+"""
+
+_ffi = cffi.FFI()
+_ffi.cdef(TYPES)
+_lib = _ffi.verify(
+ source=FUNCTIONS,
+ modulename=_create_modulename([TYPES], FUNCTIONS, sys.version),
ext_package="cryptography",
)
diff --git a/cryptography/hazmat/primitives/padding.py b/cryptography/hazmat/primitives/padding.py
--- a/cryptography/hazmat/primitives/padding.py
+++ b/cryptography/hazmat/primitives/padding.py
@@ -13,20 +13,22 @@
from __future__ import absolute_import, division, print_function
+import sys
+
import cffi
import six
from cryptography import utils
+from cryptography.hazmat.bindings.utils import _create_modulename
from cryptography.hazmat.primitives import interfaces
-_ffi = cffi.FFI()
-_ffi.cdef("""
+TYPES = """
uint8_t Cryptography_check_pkcs7_padding(const uint8_t *, uint8_t);
-""")
-_lib = _ffi.verify(
- """
+"""
+
+FUNCTIONS = """
/* Returns the value of the input with the most-significant-bit copied to all
of the bits. */
static uint8_t Cryptography_DUPLICATE_MSB_TO_ALL(uint8_t a) {
@@ -62,7 +64,13 @@
/* Now check the low bit to see if it's set */
return (mismatch & 1) == 0;
}
-""",
+"""
+
+_ffi = cffi.FFI()
+_ffi.cdef(TYPES)
+_lib = _ffi.verify(
+ source=FUNCTIONS,
+ modulename=_create_modulename([TYPES], FUNCTIONS, sys.version),
ext_package="cryptography",
)
| {"golden_diff": "diff --git a/cryptography/hazmat/primitives/constant_time.py b/cryptography/hazmat/primitives/constant_time.py\n--- a/cryptography/hazmat/primitives/constant_time.py\n+++ b/cryptography/hazmat/primitives/constant_time.py\n@@ -13,18 +13,20 @@\n \n from __future__ import absolute_import, division, print_function\n \n+import sys\n+\n import cffi\n \n import six\n \n+from cryptography.hazmat.bindings.utils import _create_modulename\n \n-_ffi = cffi.FFI()\n-_ffi.cdef(\"\"\"\n+TYPES = \"\"\"\n uint8_t Cryptography_constant_time_bytes_eq(uint8_t *, size_t, uint8_t *,\n size_t);\n-\"\"\")\n-_lib = _ffi.verify(\n- \"\"\"\n+\"\"\"\n+\n+FUNCTIONS = \"\"\"\n uint8_t Cryptography_constant_time_bytes_eq(uint8_t *a, size_t len_a,\n uint8_t *b, size_t len_b) {\n size_t i = 0;\n@@ -43,7 +45,13 @@\n /* Now check the low bit to see if it's set */\n return (mismatch & 1) == 0;\n }\n-\"\"\",\n+\"\"\"\n+\n+_ffi = cffi.FFI()\n+_ffi.cdef(TYPES)\n+_lib = _ffi.verify(\n+ source=FUNCTIONS,\n+ modulename=_create_modulename([TYPES], FUNCTIONS, sys.version),\n ext_package=\"cryptography\",\n )\n \ndiff --git a/cryptography/hazmat/primitives/padding.py b/cryptography/hazmat/primitives/padding.py\n--- a/cryptography/hazmat/primitives/padding.py\n+++ b/cryptography/hazmat/primitives/padding.py\n@@ -13,20 +13,22 @@\n \n from __future__ import absolute_import, division, print_function\n \n+import sys\n+\n import cffi\n \n import six\n \n from cryptography import utils\n+from cryptography.hazmat.bindings.utils import _create_modulename\n from cryptography.hazmat.primitives import interfaces\n \n \n-_ffi = cffi.FFI()\n-_ffi.cdef(\"\"\"\n+TYPES = \"\"\"\n uint8_t Cryptography_check_pkcs7_padding(const uint8_t *, uint8_t);\n-\"\"\")\n-_lib = _ffi.verify(\n- \"\"\"\n+\"\"\"\n+\n+FUNCTIONS = \"\"\"\n /* Returns the value of the input with the most-significant-bit copied to all\n of the bits. */\n static uint8_t Cryptography_DUPLICATE_MSB_TO_ALL(uint8_t a) {\n@@ -62,7 +64,13 @@\n /* Now check the low bit to see if it's set */\n return (mismatch & 1) == 0;\n }\n-\"\"\",\n+\"\"\"\n+\n+_ffi = cffi.FFI()\n+_ffi.cdef(TYPES)\n+_lib = _ffi.verify(\n+ source=FUNCTIONS,\n+ modulename=_create_modulename([TYPES], FUNCTIONS, sys.version),\n ext_package=\"cryptography\",\n )\n", "issue": "cffi module names\nHi!\n\nhazmat/bindings/utils.py already sets a modulename for ffi.verify.\nHowever, hazmat/primitives/constant_time.py and hazmat/primitives/padding.py don't. Please set it there as well, this will help with packaging cffi.\n\nThanks!\n\n", "before_files": [{"content": "# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or\n# implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nfrom __future__ import absolute_import, division, print_function\n\nimport cffi\n\nimport six\n\n\n_ffi = cffi.FFI()\n_ffi.cdef(\"\"\"\nuint8_t Cryptography_constant_time_bytes_eq(uint8_t *, size_t, uint8_t *,\n size_t);\n\"\"\")\n_lib = _ffi.verify(\n \"\"\"\nuint8_t Cryptography_constant_time_bytes_eq(uint8_t *a, size_t len_a,\n uint8_t *b, size_t len_b) {\n size_t i = 0;\n uint8_t mismatch = 0;\n if (len_a != len_b) {\n return 0;\n }\n for (i = 0; i < len_a; i++) {\n mismatch |= a[i] ^ b[i];\n }\n\n /* Make sure any bits set are copied to the lowest bit */\n mismatch |= mismatch >> 4;\n mismatch |= mismatch >> 2;\n mismatch |= mismatch >> 1;\n /* Now check the low bit to see if it's set */\n return (mismatch & 1) == 0;\n}\n\"\"\",\n ext_package=\"cryptography\",\n)\n\n\ndef bytes_eq(a, b):\n if isinstance(a, six.text_type) or isinstance(b, six.text_type):\n raise TypeError(\"Unicode-objects must be encoded before comparing\")\n\n return _lib.Cryptography_constant_time_bytes_eq(a, len(a), b, len(b)) == 1\n", "path": "cryptography/hazmat/primitives/constant_time.py"}, {"content": "# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or\n# implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nfrom __future__ import absolute_import, division, print_function\n\nimport cffi\n\nimport six\n\nfrom cryptography import utils\nfrom cryptography.hazmat.primitives import interfaces\n\n\n_ffi = cffi.FFI()\n_ffi.cdef(\"\"\"\nuint8_t Cryptography_check_pkcs7_padding(const uint8_t *, uint8_t);\n\"\"\")\n_lib = _ffi.verify(\n \"\"\"\n/* Returns the value of the input with the most-significant-bit copied to all\n of the bits. */\nstatic uint8_t Cryptography_DUPLICATE_MSB_TO_ALL(uint8_t a) {\n return (1 - (a >> (sizeof(uint8_t) * 8 - 1))) - 1;\n}\n\n/* This returns 0xFF if a < b else 0x00, but does so in a constant time\n fashion */\nstatic uint8_t Cryptography_constant_time_lt(uint8_t a, uint8_t b) {\n a -= b;\n return Cryptography_DUPLICATE_MSB_TO_ALL(a);\n}\n\nuint8_t Cryptography_check_pkcs7_padding(const uint8_t *data,\n uint8_t block_len) {\n uint8_t i;\n uint8_t pad_size = data[block_len - 1];\n uint8_t mismatch = 0;\n for (i = 0; i < block_len; i++) {\n unsigned int mask = Cryptography_constant_time_lt(i, pad_size);\n uint8_t b = data[block_len - 1 - i];\n mismatch |= (mask & (pad_size ^ b));\n }\n\n /* Check to make sure the pad_size was within the valid range. */\n mismatch |= ~Cryptography_constant_time_lt(0, pad_size);\n mismatch |= Cryptography_constant_time_lt(block_len, pad_size);\n\n /* Make sure any bits set are copied to the lowest bit */\n mismatch |= mismatch >> 4;\n mismatch |= mismatch >> 2;\n mismatch |= mismatch >> 1;\n /* Now check the low bit to see if it's set */\n return (mismatch & 1) == 0;\n}\n\"\"\",\n ext_package=\"cryptography\",\n)\n\n\nclass PKCS7(object):\n def __init__(self, block_size):\n if not (0 <= block_size < 256):\n raise ValueError(\"block_size must be in range(0, 256)\")\n\n if block_size % 8 != 0:\n raise ValueError(\"block_size must be a multiple of 8\")\n\n self.block_size = block_size\n\n def padder(self):\n return _PKCS7PaddingContext(self.block_size)\n\n def unpadder(self):\n return _PKCS7UnpaddingContext(self.block_size)\n\n\[email protected]_interface(interfaces.PaddingContext)\nclass _PKCS7PaddingContext(object):\n def __init__(self, block_size):\n self.block_size = block_size\n # TODO: more copies than necessary, we should use zero-buffer (#193)\n self._buffer = b\"\"\n\n def update(self, data):\n if self._buffer is None:\n raise ValueError(\"Context was already finalized\")\n\n if isinstance(data, six.text_type):\n raise TypeError(\"Unicode-objects must be encoded before padding\")\n\n self._buffer += data\n\n finished_blocks = len(self._buffer) // (self.block_size // 8)\n\n result = self._buffer[:finished_blocks * (self.block_size // 8)]\n self._buffer = self._buffer[finished_blocks * (self.block_size // 8):]\n\n return result\n\n def finalize(self):\n if self._buffer is None:\n raise ValueError(\"Context was already finalized\")\n\n pad_size = self.block_size // 8 - len(self._buffer)\n result = self._buffer + six.int2byte(pad_size) * pad_size\n self._buffer = None\n return result\n\n\[email protected]_interface(interfaces.PaddingContext)\nclass _PKCS7UnpaddingContext(object):\n def __init__(self, block_size):\n self.block_size = block_size\n # TODO: more copies than necessary, we should use zero-buffer (#193)\n self._buffer = b\"\"\n\n def update(self, data):\n if self._buffer is None:\n raise ValueError(\"Context was already finalized\")\n\n if isinstance(data, six.text_type):\n raise TypeError(\"Unicode-objects must be encoded before unpadding\")\n\n self._buffer += data\n\n finished_blocks = max(\n len(self._buffer) // (self.block_size // 8) - 1,\n 0\n )\n\n result = self._buffer[:finished_blocks * (self.block_size // 8)]\n self._buffer = self._buffer[finished_blocks * (self.block_size // 8):]\n\n return result\n\n def finalize(self):\n if self._buffer is None:\n raise ValueError(\"Context was already finalized\")\n\n if len(self._buffer) != self.block_size // 8:\n raise ValueError(\"Invalid padding bytes\")\n\n valid = _lib.Cryptography_check_pkcs7_padding(\n self._buffer, self.block_size // 8\n )\n\n if not valid:\n raise ValueError(\"Invalid padding bytes\")\n\n pad_size = six.indexbytes(self._buffer, -1)\n res = self._buffer[:-pad_size]\n self._buffer = None\n return res\n", "path": "cryptography/hazmat/primitives/padding.py"}]} | 2,822 | 637 |
gh_patches_debug_3688 | rasdani/github-patches | git_diff | googleapis__google-cloud-python-8992 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
BigQuery Storage: Add more in-depth system tests covering all data formats and field data types
**Simple functional tests**
- [ ] Simple correctness: create a table with some initial data, create a read session over the table, and verify that the expected number of rows is returned.
- [ ] Filtering: create a table with some initial data, create a read session over the table with a push-down filter which excludes some data, and verify that the expected number of rows is returned. (Avro-only)
- [ ] Column selection: create a table with some initial data, create a read session over the table with a list of columns specified, and verify that the expected columns and rows are returned.
- [ ] Snapshot test: create a table with some initial data, load some additional data as a separate step, create a read session using the timestamp of the initial load, read the data, and verify that the initial data is returned and the additional data is not returned. (Avro-only)
- [ ] Column-partitioned table test: create a column-partitioned table, read from the table with a partition filter specified, and verify that only the expected data is returned. (Avro-only)
- [ ] Naturally-partitioned table test: create a date-partitioned table, read from the table with a partition filter specified, and verify that only the expected data is returned.
- [ ] Data decoding: create a table with at least one field of each type supported by BigQuery -- including numeric, geographic, etc. -- and verify that the fields are decoded successfully.
- [ ] Resuming a read at an offset. For example, we can have some using the Shakespeare samples table which reads half-way and then resumes.
Many of these tests can be implemented using a pre-created sample table if appropriate -- tests a, b, and c use the Shakespeare samples table in our internal tests, for example.
**Long-running tests**
- [ ] ~Open a set of streams in parallel and read the full contents of a large table -- our google3 internal equivalent uses the Wikipedia sample table (which is about 35GB in size) and runs for between 10 and 20 minutes. This test should detect issues with long-running streams and, over time, should eventually add coverage for transparent stream resumption in Java and Python.~ [swast] I don't think we want to block client presubmits with a 10-to-20 minute system test. I'll work with @shollyman and the backend team to figure out a more appropriate home for these long-running tests.
This was originally filed internally as bug 133243219.
</issue>
<code>
[start of bigquery_storage/noxfile.py]
1 # -*- coding: utf-8 -*-
2 #
3 # Copyright 2018 Google LLC
4 #
5 # Licensed under the Apache License, Version 2.0 (the "License");
6 # you may not use this file except in compliance with the License.
7 # You may obtain a copy of the License at
8 #
9 # https://www.apache.org/licenses/LICENSE-2.0
10 #
11 # Unless required by applicable law or agreed to in writing, software
12 # distributed under the License is distributed on an "AS IS" BASIS,
13 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
14 # See the License for the specific language governing permissions and
15 # limitations under the License.
16
17 # Generated by synthtool. DO NOT EDIT!
18
19 from __future__ import absolute_import
20 import os
21 import shutil
22
23 import nox
24
25
26 LOCAL_DEPS = (os.path.join("..", "api_core"), os.path.join("..", "core"))
27 BLACK_VERSION = "black==19.3b0"
28 BLACK_PATHS = ["docs", "google", "tests", "noxfile.py", "setup.py"]
29
30 if os.path.exists("samples"):
31 BLACK_PATHS.append("samples")
32
33
34 @nox.session(python="3.7")
35 def lint(session):
36 """Run linters.
37
38 Returns a failure if the linters find linting errors or sufficiently
39 serious code quality issues.
40 """
41 session.install("flake8", BLACK_VERSION, *LOCAL_DEPS)
42 session.run("black", "--check", *BLACK_PATHS)
43 session.run("flake8", "google", "tests")
44
45
46 @nox.session(python="3.6")
47 def blacken(session):
48 """Run black.
49
50 Format code to uniform standard.
51
52 This currently uses Python 3.6 due to the automated Kokoro run of synthtool.
53 That run uses an image that doesn't have 3.6 installed. Before updating this
54 check the state of the `gcp_ubuntu_config` we use for that Kokoro run.
55 """
56 session.install(BLACK_VERSION)
57 session.run("black", *BLACK_PATHS)
58
59
60 @nox.session(python="3.7")
61 def lint_setup_py(session):
62 """Verify that setup.py is valid (including RST check)."""
63 session.install("docutils", "pygments")
64 session.run("python", "setup.py", "check", "--restructuredtext", "--strict")
65
66
67 def default(session):
68 # Install all test dependencies, then install this package in-place.
69 session.install("mock", "pytest", "pytest-cov")
70 for local_dep in LOCAL_DEPS:
71 session.install("-e", local_dep)
72 session.install("-e", ".")
73 session.install("-e", ".[fastavro,pandas,pyarrow]")
74
75 # Run py.test against the unit tests.
76 session.run(
77 "py.test",
78 "--quiet",
79 "--cov=google.cloud",
80 "--cov=tests.unit",
81 "--cov-append",
82 "--cov-config=.coveragerc",
83 "--cov-report=",
84 "--cov-fail-under=0",
85 os.path.join("tests", "unit"),
86 *session.posargs,
87 )
88
89
90 @nox.session(python=["2.7", "3.5", "3.6", "3.7"])
91 def unit(session):
92 """Run the unit test suite."""
93 default(session)
94
95
96 @nox.session(python=["2.7", "3.7"])
97 def system(session):
98 """Run the system test suite."""
99 system_test_path = os.path.join("tests", "system.py")
100 system_test_folder_path = os.path.join("tests", "system")
101 # Sanity check: Only run tests if the environment variable is set.
102 if not os.environ.get("GOOGLE_APPLICATION_CREDENTIALS", ""):
103 session.skip("Credentials must be set via environment variable")
104
105 system_test_exists = os.path.exists(system_test_path)
106 system_test_folder_exists = os.path.exists(system_test_folder_path)
107 # Sanity check: only run tests if found.
108 if not system_test_exists and not system_test_folder_exists:
109 session.skip("System tests were not found")
110
111 # Use pre-release gRPC for system tests.
112 session.install("--pre", "grpcio")
113
114 # Install all test dependencies, then install this package into the
115 # virtualenv's dist-packages.
116 session.install("mock", "pytest")
117 for local_dep in LOCAL_DEPS:
118 session.install("-e", local_dep)
119 session.install("-e", "../test_utils/")
120 session.install("-e", ".[fastavro,pandas,pyarrow]")
121 session.install("-e", ".")
122
123 # Run py.test against the system tests.
124 if system_test_exists:
125 session.run("py.test", "--quiet", system_test_path, *session.posargs)
126 if system_test_folder_exists:
127 session.run("py.test", "--quiet", system_test_folder_path, *session.posargs)
128
129
130 @nox.session(python=["2.7", "3.7"])
131 def samples(session):
132 requirements_path = os.path.join("samples", "requirements.txt")
133 requirements_exists = os.path.exists(requirements_path)
134
135 # Sanity check: Only run tests if the environment variable is set.
136 if not os.environ.get("GOOGLE_APPLICATION_CREDENTIALS", ""):
137 session.skip("Credentials must be set via environment variable")
138
139 session.install("mock", "pytest")
140 for local_dep in LOCAL_DEPS:
141 session.install("-e", local_dep)
142 if requirements_exists:
143 session.install("-r", requirements_path)
144 session.install("-e", ".")
145
146 session.run("py.test", "--quiet", "samples", *session.posargs)
147
148
149 @nox.session(python="3.7")
150 def cover(session):
151 """Run the final coverage report.
152
153 This outputs the coverage report aggregating coverage from the unit
154 test runs (not system test runs), and then erases coverage data.
155 """
156 session.install("coverage", "pytest-cov")
157 session.run("coverage", "report", "--show-missing", "--fail-under=79")
158
159 session.run("coverage", "erase")
160
161
162 @nox.session(python="3.7")
163 def docs(session):
164 """Build the docs for this library."""
165
166 session.install("-e", ".")
167 session.install("sphinx", "alabaster", "recommonmark")
168
169 shutil.rmtree(os.path.join("docs", "_build"), ignore_errors=True)
170 session.run(
171 "sphinx-build",
172 "-W", # warnings as errors
173 "-T", # show full traceback on exception
174 "-N", # no colors
175 "-b",
176 "html",
177 "-d",
178 os.path.join("docs", "_build", "doctrees", ""),
179 os.path.join("docs", ""),
180 os.path.join("docs", "_build", "html", ""),
181 )
182
[end of bigquery_storage/noxfile.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/bigquery_storage/noxfile.py b/bigquery_storage/noxfile.py
--- a/bigquery_storage/noxfile.py
+++ b/bigquery_storage/noxfile.py
@@ -118,6 +118,7 @@
session.install("-e", local_dep)
session.install("-e", "../test_utils/")
session.install("-e", ".[fastavro,pandas,pyarrow]")
+ session.install("-e", "../bigquery/")
session.install("-e", ".")
# Run py.test against the system tests.
| {"golden_diff": "diff --git a/bigquery_storage/noxfile.py b/bigquery_storage/noxfile.py\n--- a/bigquery_storage/noxfile.py\n+++ b/bigquery_storage/noxfile.py\n@@ -118,6 +118,7 @@\n session.install(\"-e\", local_dep)\n session.install(\"-e\", \"../test_utils/\")\n session.install(\"-e\", \".[fastavro,pandas,pyarrow]\")\n+ session.install(\"-e\", \"../bigquery/\")\n session.install(\"-e\", \".\")\n \n # Run py.test against the system tests.\n", "issue": "BigQuery Storage: Add more in-depth system tests covering all data formats and field data types\n**Simple functional tests**\r\n\r\n- [ ] Simple correctness: create a table with some initial data, create a read session over the table, and verify that the expected number of rows is returned.\r\n- [ ] Filtering: create a table with some initial data, create a read session over the table with a push-down filter which excludes some data, and verify that the expected number of rows is returned. (Avro-only)\r\n- [ ] Column selection: create a table with some initial data, create a read session over the table with a list of columns specified, and verify that the expected columns and rows are returned.\r\n- [ ] Snapshot test: create a table with some initial data, load some additional data as a separate step, create a read session using the timestamp of the initial load, read the data, and verify that the initial data is returned and the additional data is not returned. (Avro-only)\r\n- [ ] Column-partitioned table test: create a column-partitioned table, read from the table with a partition filter specified, and verify that only the expected data is returned. (Avro-only)\r\n- [ ] Naturally-partitioned table test: create a date-partitioned table, read from the table with a partition filter specified, and verify that only the expected data is returned.\r\n- [ ] Data decoding: create a table with at least one field of each type supported by BigQuery -- including numeric, geographic, etc. -- and verify that the fields are decoded successfully.\r\n- [ ] Resuming a read at an offset. For example, we can have some using the Shakespeare samples table which reads half-way and then resumes.\r\n\r\nMany of these tests can be implemented using a pre-created sample table if appropriate -- tests a, b, and c use the Shakespeare samples table in our internal tests, for example.\r\n\r\n**Long-running tests**\r\n\r\n- [ ] ~Open a set of streams in parallel and read the full contents of a large table -- our google3 internal equivalent uses the Wikipedia sample table (which is about 35GB in size) and runs for between 10 and 20 minutes. This test should detect issues with long-running streams and, over time, should eventually add coverage for transparent stream resumption in Java and Python.~ [swast] I don't think we want to block client presubmits with a 10-to-20 minute system test. I'll work with @shollyman and the backend team to figure out a more appropriate home for these long-running tests.\r\n\r\nThis was originally filed internally as bug 133243219.\n", "before_files": [{"content": "# -*- coding: utf-8 -*-\n#\n# Copyright 2018 Google LLC\n#\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n#\n# https://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\n# Generated by synthtool. DO NOT EDIT!\n\nfrom __future__ import absolute_import\nimport os\nimport shutil\n\nimport nox\n\n\nLOCAL_DEPS = (os.path.join(\"..\", \"api_core\"), os.path.join(\"..\", \"core\"))\nBLACK_VERSION = \"black==19.3b0\"\nBLACK_PATHS = [\"docs\", \"google\", \"tests\", \"noxfile.py\", \"setup.py\"]\n\nif os.path.exists(\"samples\"):\n BLACK_PATHS.append(\"samples\")\n\n\[email protected](python=\"3.7\")\ndef lint(session):\n \"\"\"Run linters.\n\n Returns a failure if the linters find linting errors or sufficiently\n serious code quality issues.\n \"\"\"\n session.install(\"flake8\", BLACK_VERSION, *LOCAL_DEPS)\n session.run(\"black\", \"--check\", *BLACK_PATHS)\n session.run(\"flake8\", \"google\", \"tests\")\n\n\[email protected](python=\"3.6\")\ndef blacken(session):\n \"\"\"Run black.\n\n Format code to uniform standard.\n\n This currently uses Python 3.6 due to the automated Kokoro run of synthtool.\n That run uses an image that doesn't have 3.6 installed. Before updating this\n check the state of the `gcp_ubuntu_config` we use for that Kokoro run.\n \"\"\"\n session.install(BLACK_VERSION)\n session.run(\"black\", *BLACK_PATHS)\n\n\[email protected](python=\"3.7\")\ndef lint_setup_py(session):\n \"\"\"Verify that setup.py is valid (including RST check).\"\"\"\n session.install(\"docutils\", \"pygments\")\n session.run(\"python\", \"setup.py\", \"check\", \"--restructuredtext\", \"--strict\")\n\n\ndef default(session):\n # Install all test dependencies, then install this package in-place.\n session.install(\"mock\", \"pytest\", \"pytest-cov\")\n for local_dep in LOCAL_DEPS:\n session.install(\"-e\", local_dep)\n session.install(\"-e\", \".\")\n session.install(\"-e\", \".[fastavro,pandas,pyarrow]\")\n\n # Run py.test against the unit tests.\n session.run(\n \"py.test\",\n \"--quiet\",\n \"--cov=google.cloud\",\n \"--cov=tests.unit\",\n \"--cov-append\",\n \"--cov-config=.coveragerc\",\n \"--cov-report=\",\n \"--cov-fail-under=0\",\n os.path.join(\"tests\", \"unit\"),\n *session.posargs,\n )\n\n\[email protected](python=[\"2.7\", \"3.5\", \"3.6\", \"3.7\"])\ndef unit(session):\n \"\"\"Run the unit test suite.\"\"\"\n default(session)\n\n\[email protected](python=[\"2.7\", \"3.7\"])\ndef system(session):\n \"\"\"Run the system test suite.\"\"\"\n system_test_path = os.path.join(\"tests\", \"system.py\")\n system_test_folder_path = os.path.join(\"tests\", \"system\")\n # Sanity check: Only run tests if the environment variable is set.\n if not os.environ.get(\"GOOGLE_APPLICATION_CREDENTIALS\", \"\"):\n session.skip(\"Credentials must be set via environment variable\")\n\n system_test_exists = os.path.exists(system_test_path)\n system_test_folder_exists = os.path.exists(system_test_folder_path)\n # Sanity check: only run tests if found.\n if not system_test_exists and not system_test_folder_exists:\n session.skip(\"System tests were not found\")\n\n # Use pre-release gRPC for system tests.\n session.install(\"--pre\", \"grpcio\")\n\n # Install all test dependencies, then install this package into the\n # virtualenv's dist-packages.\n session.install(\"mock\", \"pytest\")\n for local_dep in LOCAL_DEPS:\n session.install(\"-e\", local_dep)\n session.install(\"-e\", \"../test_utils/\")\n session.install(\"-e\", \".[fastavro,pandas,pyarrow]\")\n session.install(\"-e\", \".\")\n\n # Run py.test against the system tests.\n if system_test_exists:\n session.run(\"py.test\", \"--quiet\", system_test_path, *session.posargs)\n if system_test_folder_exists:\n session.run(\"py.test\", \"--quiet\", system_test_folder_path, *session.posargs)\n\n\[email protected](python=[\"2.7\", \"3.7\"])\ndef samples(session):\n requirements_path = os.path.join(\"samples\", \"requirements.txt\")\n requirements_exists = os.path.exists(requirements_path)\n\n # Sanity check: Only run tests if the environment variable is set.\n if not os.environ.get(\"GOOGLE_APPLICATION_CREDENTIALS\", \"\"):\n session.skip(\"Credentials must be set via environment variable\")\n\n session.install(\"mock\", \"pytest\")\n for local_dep in LOCAL_DEPS:\n session.install(\"-e\", local_dep)\n if requirements_exists:\n session.install(\"-r\", requirements_path)\n session.install(\"-e\", \".\")\n\n session.run(\"py.test\", \"--quiet\", \"samples\", *session.posargs)\n\n\[email protected](python=\"3.7\")\ndef cover(session):\n \"\"\"Run the final coverage report.\n\n This outputs the coverage report aggregating coverage from the unit\n test runs (not system test runs), and then erases coverage data.\n \"\"\"\n session.install(\"coverage\", \"pytest-cov\")\n session.run(\"coverage\", \"report\", \"--show-missing\", \"--fail-under=79\")\n\n session.run(\"coverage\", \"erase\")\n\n\[email protected](python=\"3.7\")\ndef docs(session):\n \"\"\"Build the docs for this library.\"\"\"\n\n session.install(\"-e\", \".\")\n session.install(\"sphinx\", \"alabaster\", \"recommonmark\")\n\n shutil.rmtree(os.path.join(\"docs\", \"_build\"), ignore_errors=True)\n session.run(\n \"sphinx-build\",\n \"-W\", # warnings as errors\n \"-T\", # show full traceback on exception\n \"-N\", # no colors\n \"-b\",\n \"html\",\n \"-d\",\n os.path.join(\"docs\", \"_build\", \"doctrees\", \"\"),\n os.path.join(\"docs\", \"\"),\n os.path.join(\"docs\", \"_build\", \"html\", \"\"),\n )\n", "path": "bigquery_storage/noxfile.py"}]} | 2,996 | 120 |
gh_patches_debug_7007 | rasdani/github-patches | git_diff | Project-MONAI__MONAI-3072 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Tests failing on A100 due to tolerance
**Describe the bug**
14 tests are failing on A100 due to issue with tolerance. The details of all tests and relative error are given below
**To Reproduce**
On a A100 GPU:
- Setup and install MONAI
- Run tests
** Details **
Failing tests and relative error on A100 are:
- `test_rand_3d_elastic_3 (tests.test_rand_elastic_3d.TestRand3DElastic)
Mismatched elements: 1 / 8 (12.5%)
Max absolute difference: 0.00179242
Max relative differenc: 0.00010684`
- `test_value_cuda_0 (tests.test_lltm.TestLLTM)
AssertionError: With rtol=0.0001 and atol=0.0001, found 2 element(s) (out of 8) whose difference(s) exceeded the margin of error (including 0 nan comparisons). The greatest difference was 0.00022590160369873047 (0.616874098777771 vs. 0.6171000003814697), which occurred at index (2, 1).`
- `test_shape_5 (tests.test_local_normalized_cross_correlation_loss.TestLocalNormalizedCrossCorrelationLoss)
Not equal to tolerance rtol=1e-05, atol=0
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array(-0.918834, dype=float32)
y: array(-0.918672)`
- `test_shape_0 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)
Not equal to tolerance rtol=0.0001, atol=0
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array(-1.098231, dype=float32)
y: array(-1.098602)`
- `test_shape_1 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)
AssertionError:
Not equal to tolerance rtol=0.0001, atol=0
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array(-1.083798, dype=float32)
y: array(-1.083999)`
- `test_shape_2 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)
AssertionError:
Not equal to tolerance rtol=0.0001, atol=0
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array(-1.083799, dype=float32)
y: array(-1.083999)`
- `test_shape_3 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)
AssertionError:
Not equal to tolerance rtol=0.0001, atol=0
Mismatched elements: 1 / 1 (100%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array(-1.083798, dype=float32)
y: array(-1.083999)`
- `test_affine_transform_2d (tests.test_affine_transform.TestAffineTransform)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0.0001
Mismatched elements: 12 / 12 (100%)
Max absolute difference: 0.002
Max relative diffrence: 3071.
x: array([[[[0.002197, 0.499532, 0.999491, 1.49934],
[3.866943, 1.365621, 1.86558 , 2.36523],
[7.7323 , 3.037472, 2.731669, 3.231812]]]], dype=float32)
y: array([[[[0.000001, 0.5 , 1. , 1.5 ],
[3.866026, 1.366025, 1.866025, 2.36625],
[7.732052, 3.035899, 2.732051, 3.232051]]]])`
- `test_affine_transform_3d (tests.test_affine_transform.TestAffineTransform)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0.0001
Mismatched elements: 44 / 48 (91.7%)
Max absolute difference: 0.002
Max relative differene: 31533.831
x: array([[[[[ 0.001892, 0.5017 ],
[ 2.367615, 1.36743],
[ 4.733337, .402832],...
y: array([[[[[ 0. , 0.5 ],
[ 2.366025, 1.36605],
[ 4.732051, 2.401924],...`
- `test_to_norm_affine_0 (tests.test_affine_transform.TestToNormAffine)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0.0001
Mismatched elements: 2 / 9 (22.2%)
Max absolute difference: 0.
Max relative diffrence: 0.001
x: array([[[ 1.333008, 0. , 0.33008],
[ 0. , 0.399902, -0.60098],
[ 0. , 0. , 1. ]]], dype=float32)
y: array([[[ 1.333333, 0. , 0.33333],
[ 0. , 0.4 , -0.6 ],
[ 0. , 0. , 1. ]]])`
- `test_to_norm_affine_1 (tests.test_affine_transform.TestToNormAffine)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0.0001
Mismatched elements: 2 / 9 (22.2%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array([[[ 1.25 , 0. , 0.25 ],
[ 0. , 0.499878, -0.50244],
[ 0. , 0. , 1. ]]], dype=float32)
y: array([[[ 1.25, 0. , .25],
[ 0. , 0.5 , -.5 ],
[ 0. , 0. , 1. ]]])`
- `test_to_norm_affine_2 (tests.test_affine_transform.TestToNormAffine)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0.0001
Mismatched elements: 2 / 16 (12.5%)
Max absolute difference: 0.
Max relative diffrence: 0.001
x: array([[[ 2. , 0. , 0. , 1. ],
[ 0. , 1.333008, 0. , 0.33008],
[ 0. , 0. , 0.399902, -0.60098],
[ 0. , 0. , 0. , 1. ]]], dype=float32)
y: array([[[ 2. , 0. , 0. , 1. ],
[ 0. , 1.333333, 0. , 0.33333],
[ 0. , 0. , 0.4 , -0.6 ],
[ 0. , 0. , 0. , 1. ]]])`
- `test_to_norm_affine_3 (tests.test_affine_transform.TestToNormAffine)
AssertionError:
Not equal to tolerance rtol=1e-07, atol=0.0001
Mismatched elements: 2 / 16 (12.5%)
Max absolute difference: 0.
Max relative dfference: 0.
x: array([[[ 1.5 , 0. , 0. , 0.5 ],
[ 0. , 1.25 , 0. , 0.25 ],
[ 0. , 0. , 0.499878, -0.50244],
[ 0. , 0. , 0. , 1. ]]], dype=float32)
y: array([[[ 1.5 , 0. , 0. , .5 ],
[ 0. , 1.25, 0. , .25],
[ 0. , 0. , 0.5 , -.5 ],
[ 0. , 0. , 0. , 1. ]]])`
- `test_rand_2d_elastic_4 (tests.test_rand_elastic_2d.TestRand2DElastic)
AssertionError:
Not equal to tolerance rtol=0.0001, atol=0.0001
Mismatched elements: 2 / 12 (16.7%)
Max absolute difference: 0.001
Max relative dfference: 0.
x: array([[[ 1.357813, 1.92286],
[ 5.626798, 6.43219]],
...
y: array([[[ 1.358411, 1.92131],
[ 5.626623, 6.642721]],
...`
**Expected behavior**
All tests should pass
**Screenshots**
If applicable, add screenshots to help explain your problem.
**Proposed Solution**
To increase the relative and absolute tolerance of the tests.
build failed because of pip install
**Describe the bug**
errors from the quick tests `pip install`:
```
Attempting uninstall: ruamel.yaml
Found existing installation: ruamel-yaml 0.15.87
ERROR: Cannot uninstall 'ruamel-yaml'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.
```
</issue>
<code>
[start of monai/__init__.py]
1 # Copyright 2020 - 2021 MONAI Consortium
2 # Licensed under the Apache License, Version 2.0 (the "License");
3 # you may not use this file except in compliance with the License.
4 # You may obtain a copy of the License at
5 # http://www.apache.org/licenses/LICENSE-2.0
6 # Unless required by applicable law or agreed to in writing, software
7 # distributed under the License is distributed on an "AS IS" BASIS,
8 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
9 # See the License for the specific language governing permissions and
10 # limitations under the License.
11
12 import os
13 import sys
14
15 from ._version import get_versions
16
17 PY_REQUIRED_MAJOR = 3
18 PY_REQUIRED_MINOR = 6
19
20 version_dict = get_versions()
21 __version__: str = version_dict.get("version", "0+unknown")
22 __revision_id__: str = version_dict.get("full-revisionid")
23 del get_versions, version_dict
24
25 __copyright__ = "(c) 2020 - 2021 MONAI Consortium"
26
27 __basedir__ = os.path.dirname(__file__)
28
29 if not (sys.version_info.major == PY_REQUIRED_MAJOR and sys.version_info.minor >= PY_REQUIRED_MINOR):
30 raise RuntimeError(
31 "MONAI requires Python {}.{} or higher. But the current Python is: {}".format(
32 PY_REQUIRED_MAJOR, PY_REQUIRED_MINOR, sys.version
33 ),
34 )
35
36 from .utils.module import load_submodules
37
38 # handlers_* have some external decorators the users may not have installed
39 # *.so files and folder "_C" may not exist when the cpp extensions are not compiled
40 excludes = "(^(monai.handlers))|((\\.so)$)|(^(monai._C))"
41
42 # load directory modules only, skip loading individual files
43 load_submodules(sys.modules[__name__], False, exclude_pattern=excludes)
44
45 # load all modules, this will trigger all export decorations
46 load_submodules(sys.modules[__name__], True, exclude_pattern=excludes)
47
48 __all__ = [
49 "apps",
50 "config",
51 "data",
52 "engines",
53 "handlers",
54 "inferers",
55 "losses",
56 "metrics",
57 "networks",
58 "optimizers",
59 "transforms",
60 "utils",
61 "visualize",
62 ]
63
[end of monai/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/monai/__init__.py b/monai/__init__.py
--- a/monai/__init__.py
+++ b/monai/__init__.py
@@ -26,7 +26,7 @@
__basedir__ = os.path.dirname(__file__)
-if not (sys.version_info.major == PY_REQUIRED_MAJOR and sys.version_info.minor >= PY_REQUIRED_MINOR):
+if sys.version_info.major != PY_REQUIRED_MAJOR or sys.version_info.minor < PY_REQUIRED_MINOR:
raise RuntimeError(
"MONAI requires Python {}.{} or higher. But the current Python is: {}".format(
PY_REQUIRED_MAJOR, PY_REQUIRED_MINOR, sys.version
| {"golden_diff": "diff --git a/monai/__init__.py b/monai/__init__.py\n--- a/monai/__init__.py\n+++ b/monai/__init__.py\n@@ -26,7 +26,7 @@\n \n __basedir__ = os.path.dirname(__file__)\n \n-if not (sys.version_info.major == PY_REQUIRED_MAJOR and sys.version_info.minor >= PY_REQUIRED_MINOR):\n+if sys.version_info.major != PY_REQUIRED_MAJOR or sys.version_info.minor < PY_REQUIRED_MINOR:\n raise RuntimeError(\n \"MONAI requires Python {}.{} or higher. But the current Python is: {}\".format(\n PY_REQUIRED_MAJOR, PY_REQUIRED_MINOR, sys.version\n", "issue": "Tests failing on A100 due to tolerance\n**Describe the bug**\r\n14 tests are failing on A100 due to issue with tolerance. The details of all tests and relative error are given below\r\n\r\n**To Reproduce**\r\nOn a A100 GPU:\r\n- Setup and install MONAI\r\n- Run tests\r\n\r\n** Details **\r\nFailing tests and relative error on A100 are:\r\n\r\n- `test_rand_3d_elastic_3 (tests.test_rand_elastic_3d.TestRand3DElastic)\r\nMismatched elements: 1 / 8 (12.5%)\r\nMax absolute difference: 0.00179242\r\nMax relative differenc: 0.00010684`\r\n- `test_value_cuda_0 (tests.test_lltm.TestLLTM)\r\nAssertionError: With rtol=0.0001 and atol=0.0001, found 2 element(s) (out of 8) whose difference(s) exceeded the margin of error (including 0 nan comparisons). The greatest difference was 0.00022590160369873047 (0.616874098777771 vs. 0.6171000003814697), which occurred at index (2, 1).`\r\n- `test_shape_5 (tests.test_local_normalized_cross_correlation_loss.TestLocalNormalizedCrossCorrelationLoss)\r\nNot equal to tolerance rtol=1e-05, atol=0\r\nMismatched elements: 1 / 1 (100%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array(-0.918834, dype=float32)\r\n \u200by: array(-0.918672)`\r\n- `test_shape_0 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)\r\nNot equal to tolerance rtol=0.0001, atol=0\r\nMismatched elements: 1 / 1 (100%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array(-1.098231, dype=float32)\r\n \u200by: array(-1.098602)`\r\n- `test_shape_1 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)\r\nAssertionError: \r\nNot equal to tolerance rtol=0.0001, atol=0\r\nMismatched elements: 1 / 1 (100%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array(-1.083798, dype=float32)\r\n \u200by: array(-1.083999)`\r\n- `test_shape_2 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)\r\nAssertionError: \r\nNot equal to tolerance rtol=0.0001, atol=0\r\nMismatched elements: 1 / 1 (100%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array(-1.083799, dype=float32)\r\n \u200by: array(-1.083999)`\r\n- `test_shape_3 (tests.test_global_mutual_information_loss.TestGlobalMutualInformationLoss)\r\nAssertionError: \r\nNot equal to tolerance rtol=0.0001, atol=0\r\nMismatched elements: 1 / 1 (100%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array(-1.083798, dype=float32)\r\n \u200by: array(-1.083999)`\r\n- `test_affine_transform_2d (tests.test_affine_transform.TestAffineTransform)\r\nAssertionError: \r\nNot equal to tolerance rtol=1e-07, atol=0.0001\r\nMismatched elements: 12 / 12 (100%)\r\nMax absolute difference: 0.002\r\nMax relative diffrence: 3071.\r\n \u200bx: array([[[[0.002197, 0.499532, 0.999491, 1.49934],\r\n \u200b[3.866943, 1.365621, 1.86558 , 2.36523],\r\n \u200b[7.7323 , 3.037472, 2.731669, 3.231812]]]], dype=float32)\r\n \u200by: array([[[[0.000001, 0.5 , 1. , 1.5 ],\r\n \u200b[3.866026, 1.366025, 1.866025, 2.36625],\r\n \u200b[7.732052, 3.035899, 2.732051, 3.232051]]]])`\r\n- `test_affine_transform_3d (tests.test_affine_transform.TestAffineTransform)\r\nAssertionError: \r\nNot equal to tolerance rtol=1e-07, atol=0.0001\r\nMismatched elements: 44 / 48 (91.7%)\r\nMax absolute difference: 0.002\r\nMax relative differene: 31533.831\r\n \u200bx: array([[[[[ 0.001892, 0.5017 ],\r\n \u200b[ 2.367615, 1.36743],\r\n \u200b[ 4.733337, .402832],...\r\n \u200by: array([[[[[ 0. , 0.5 ],\r\n \u200b[ 2.366025, 1.36605],\r\n \u200b[ 4.732051, 2.401924],...`\r\n- `test_to_norm_affine_0 (tests.test_affine_transform.TestToNormAffine)\r\nAssertionError: \r\nNot equal to tolerance rtol=1e-07, atol=0.0001\r\nMismatched elements: 2 / 9 (22.2%)\r\nMax absolute difference: 0.\r\nMax relative diffrence: 0.001\r\n \u200bx: array([[[ 1.333008, 0. , 0.33008],\r\n \u200b[ 0. , 0.399902, -0.60098],\r\n \u200b[ 0. , 0. , 1. ]]], dype=float32)\r\n \u200by: array([[[ 1.333333, 0. , 0.33333],\r\n \u200b[ 0. , 0.4 , -0.6 ],\r\n \u200b[ 0. , 0. , 1. ]]])`\r\n- `test_to_norm_affine_1 (tests.test_affine_transform.TestToNormAffine)\r\nAssertionError: \r\nNot equal to tolerance rtol=1e-07, atol=0.0001\r\nMismatched elements: 2 / 9 (22.2%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array([[[ 1.25 , 0. , 0.25 ],\r\n \u200b[ 0. , 0.499878, -0.50244],\r\n \u200b[ 0. , 0. , 1. ]]], dype=float32)\r\n \u200by: array([[[ 1.25, 0. , .25],\r\n \u200b[ 0. , 0.5 , -.5 ],\r\n \u200b[ 0. , 0. , 1. ]]])`\r\n- `test_to_norm_affine_2 (tests.test_affine_transform.TestToNormAffine)\r\nAssertionError: \r\nNot equal to tolerance rtol=1e-07, atol=0.0001\r\n\r\nMismatched elements: 2 / 16 (12.5%)\r\nMax absolute difference: 0.\r\nMax relative diffrence: 0.001\r\n \u200bx: array([[[ 2. , 0. , 0. , 1. ],\r\n \u200b[ 0. , 1.333008, 0. , 0.33008],\r\n \u200b[ 0. , 0. , 0.399902, -0.60098],\r\n \u200b[ 0. , 0. , 0. , 1. ]]], dype=float32)\r\n \u200by: array([[[ 2. , 0. , 0. , 1. ],\r\n \u200b[ 0. , 1.333333, 0. , 0.33333],\r\n \u200b[ 0. , 0. , 0.4 , -0.6 ],\r\n \u200b[ 0. , 0. , 0. , 1. ]]])`\r\n- `test_to_norm_affine_3 (tests.test_affine_transform.TestToNormAffine)\r\nAssertionError: \r\nNot equal to tolerance rtol=1e-07, atol=0.0001\r\n\r\nMismatched elements: 2 / 16 (12.5%)\r\nMax absolute difference: 0.\r\nMax relative dfference: 0.\r\n \u200bx: array([[[ 1.5 , 0. , 0. , 0.5 ],\r\n \u200b[ 0. , 1.25 , 0. , 0.25 ],\r\n \u200b[ 0. , 0. , 0.499878, -0.50244],\r\n \u200b[ 0. , 0. , 0. , 1. ]]], dype=float32)\r\n \u200by: array([[[ 1.5 , 0. , 0. , .5 ],\r\n \u200b[ 0. , 1.25, 0. , .25],\r\n \u200b[ 0. , 0. , 0.5 , -.5 ],\r\n \u200b[ 0. , 0. , 0. , 1. ]]])`\r\n- `test_rand_2d_elastic_4 (tests.test_rand_elastic_2d.TestRand2DElastic)\r\nAssertionError: \r\nNot equal to tolerance rtol=0.0001, atol=0.0001\r\n\r\nMismatched elements: 2 / 12 (16.7%)\r\nMax absolute difference: 0.001\r\nMax relative dfference: 0.\r\n \u200bx: array([[[ 1.357813, 1.92286],\r\n \u200b[ 5.626798, 6.43219]],\r\n...\r\n \u200by: array([[[ 1.358411, 1.92131],\r\n \u200b[ 5.626623, 6.642721]],\r\n...`\r\n\r\n\r\n**Expected behavior**\r\nAll tests should pass\r\n\r\n**Screenshots**\r\nIf applicable, add screenshots to help explain your problem.\r\n\r\n**Proposed Solution**\r\nTo increase the relative and absolute tolerance of the tests. \r\n\nbuild failed because of pip install\n**Describe the bug**\r\nerrors from the quick tests `pip install`:\r\n```\r\n Attempting uninstall: ruamel.yaml\r\n Found existing installation: ruamel-yaml 0.15.87\r\nERROR: Cannot uninstall 'ruamel-yaml'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.\r\n```\n", "before_files": [{"content": "# Copyright 2020 - 2021 MONAI Consortium\n# Licensed under the Apache License, Version 2.0 (the \"License\");\n# you may not use this file except in compliance with the License.\n# You may obtain a copy of the License at\n# http://www.apache.org/licenses/LICENSE-2.0\n# Unless required by applicable law or agreed to in writing, software\n# distributed under the License is distributed on an \"AS IS\" BASIS,\n# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.\n# See the License for the specific language governing permissions and\n# limitations under the License.\n\nimport os\nimport sys\n\nfrom ._version import get_versions\n\nPY_REQUIRED_MAJOR = 3\nPY_REQUIRED_MINOR = 6\n\nversion_dict = get_versions()\n__version__: str = version_dict.get(\"version\", \"0+unknown\")\n__revision_id__: str = version_dict.get(\"full-revisionid\")\ndel get_versions, version_dict\n\n__copyright__ = \"(c) 2020 - 2021 MONAI Consortium\"\n\n__basedir__ = os.path.dirname(__file__)\n\nif not (sys.version_info.major == PY_REQUIRED_MAJOR and sys.version_info.minor >= PY_REQUIRED_MINOR):\n raise RuntimeError(\n \"MONAI requires Python {}.{} or higher. But the current Python is: {}\".format(\n PY_REQUIRED_MAJOR, PY_REQUIRED_MINOR, sys.version\n ),\n )\n\nfrom .utils.module import load_submodules\n\n# handlers_* have some external decorators the users may not have installed\n# *.so files and folder \"_C\" may not exist when the cpp extensions are not compiled\nexcludes = \"(^(monai.handlers))|((\\\\.so)$)|(^(monai._C))\"\n\n# load directory modules only, skip loading individual files\nload_submodules(sys.modules[__name__], False, exclude_pattern=excludes)\n\n# load all modules, this will trigger all export decorations\nload_submodules(sys.modules[__name__], True, exclude_pattern=excludes)\n\n__all__ = [\n \"apps\",\n \"config\",\n \"data\",\n \"engines\",\n \"handlers\",\n \"inferers\",\n \"losses\",\n \"metrics\",\n \"networks\",\n \"optimizers\",\n \"transforms\",\n \"utils\",\n \"visualize\",\n]\n", "path": "monai/__init__.py"}]} | 3,995 | 144 |
gh_patches_debug_29489 | rasdani/github-patches | git_diff | hylang__hy-112 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Unifying division
Since we are effectively creating a new language, we might as well fix one of the nastiest Python portability problems between 2 and 3: division. I propose to do an implicit "from **future** import division" at the top of any Hy module, as well as before starting the REPL, when running under Python 2.x.
</issue>
<code>
[start of hy/importer.py]
1 # Copyright (c) 2013 Paul Tagliamonte <[email protected]>
2 #
3 # Permission is hereby granted, free of charge, to any person obtaining a
4 # copy of this software and associated documentation files (the "Software"),
5 # to deal in the Software without restriction, including without limitation
6 # the rights to use, copy, modify, merge, publish, distribute, sublicense,
7 # and/or sell copies of the Software, and to permit persons to whom the
8 # Software is furnished to do so, subject to the following conditions:
9 #
10 # The above copyright notice and this permission notice shall be included in
11 # all copies or substantial portions of the Software.
12 #
13 # THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
14 # IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
15 # FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
16 # THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
17 # LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
18 # FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
19 # DEALINGS IN THE SOFTWARE.
20
21 from py_compile import wr_long, MAGIC
22 from hy.compiler import hy_compile
23 from hy.models import HyObject
24 from hy.core import process
25 from hy.lex import tokenize
26
27
28 from io import open
29 import marshal
30 import imp
31 import sys
32 import ast
33 import os
34
35
36 if sys.version_info[0] >= 3:
37 from io import StringIO
38 else:
39 from StringIO import StringIO # NOQA
40
41
42 def import_buffer_to_hst(fd):
43 tree = tokenize(fd.read() + "\n")
44 tree = process(tree)
45 return tree
46
47
48 def import_file_to_hst(fpath):
49 return import_buffer_to_hst(open(fpath, 'r', encoding='utf-8'))
50
51
52 def import_file_to_ast(fpath):
53 tree = import_file_to_hst(fpath)
54 _ast = hy_compile(tree)
55 return _ast
56
57
58 def import_string_to_ast(buff):
59 tree = import_buffer_to_hst(StringIO(buff))
60 _ast = hy_compile(tree)
61 return _ast
62
63
64 def import_file_to_module(name, fpath):
65 _ast = import_file_to_ast(fpath)
66 mod = imp.new_module(name)
67 mod.__file__ = fpath
68 eval(compile(_ast, fpath, "exec"), mod.__dict__)
69 return mod
70
71
72 def hy_eval(hytree, namespace):
73 foo = HyObject()
74 foo.start_line = 0
75 foo.end_line = 0
76 foo.start_column = 0
77 foo.end_column = 0
78 hytree.replace(foo)
79 _ast = hy_compile(hytree, root=ast.Expression)
80 return eval(compile(_ast, "<eval>", "eval"), namespace)
81
82
83 def write_hy_as_pyc(fname):
84 with open(fname, 'U') as f:
85 try:
86 timestamp = long(os.fstat(f.fileno()).st_mtime)
87 except AttributeError:
88 timestamp = long(os.stat(fname).st_mtime)
89
90 _ast = import_file_to_ast(fname)
91 code = compile(_ast, fname, "exec")
92 cfile = "%s.pyc" % fname[:-len(".hy")]
93
94 with open(cfile, 'wb') as fc:
95 fc.write('\0\0\0\0')
96 wr_long(fc, timestamp)
97 marshal.dump(code, fc)
98 fc.flush()
99 fc.seek(0, 0)
100 fc.write(MAGIC)
101
102
103 class HyFinder(object):
104 def is_package(self, fullname):
105 dirpath = "/".join(fullname.split("."))
106 for pth in sys.path:
107 pth = os.path.abspath(pth)
108 composed_path = "%s/%s/__init__.hy" % (pth, dirpath)
109 if os.path.exists(composed_path):
110 return True
111 return False
112
113 def find_on_path(self, fullname):
114 fls = ["%s/__init__.hy", "%s.hy"]
115 dirpath = "/".join(fullname.split("."))
116
117 for pth in sys.path:
118 pth = os.path.abspath(pth)
119 for fp in fls:
120 composed_path = fp % ("%s/%s" % (pth, dirpath))
121 if os.path.exists(composed_path):
122 return composed_path
123
124
125 class MetaLoader(HyFinder):
126 def load_module(self, fullname):
127 if fullname in sys.modules:
128 return sys.modules[fullname]
129
130 pth = self.find_on_path(fullname)
131 if pth is None:
132 return
133
134 sys.modules[fullname] = None
135 mod = import_file_to_module(fullname, pth)
136
137 ispkg = self.is_package(fullname)
138
139 mod.__file__ = pth
140 mod.__loader__ = self
141 mod.__name__ = fullname
142
143 if ispkg:
144 mod.__path__ = []
145 mod.__package__ = fullname
146 else:
147 mod.__package__ = fullname.rpartition('.')[0]
148
149 sys.modules[fullname] = mod
150 return mod
151
152
153 class MetaImporter(HyFinder):
154 def find_module(self, fullname, path=None):
155 pth = self.find_on_path(fullname)
156 if pth is None:
157 return
158 return MetaLoader()
159
160
161 sys.meta_path.append(MetaImporter())
162 sys.path.insert(0, "")
163
[end of hy/importer.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/hy/importer.py b/hy/importer.py
--- a/hy/importer.py
+++ b/hy/importer.py
@@ -31,7 +31,7 @@
import sys
import ast
import os
-
+import __future__
if sys.version_info[0] >= 3:
from io import StringIO
@@ -39,6 +39,10 @@
from StringIO import StringIO # NOQA
+def compile_(ast, filename, mode):
+ return compile(ast, filename, mode, __future__.CO_FUTURE_DIVISION)
+
+
def import_buffer_to_hst(fd):
tree = tokenize(fd.read() + "\n")
tree = process(tree)
@@ -65,7 +69,7 @@
_ast = import_file_to_ast(fpath)
mod = imp.new_module(name)
mod.__file__ = fpath
- eval(compile(_ast, fpath, "exec"), mod.__dict__)
+ eval(compile_(_ast, fpath, "exec"), mod.__dict__)
return mod
@@ -77,7 +81,7 @@
foo.end_column = 0
hytree.replace(foo)
_ast = hy_compile(hytree, root=ast.Expression)
- return eval(compile(_ast, "<eval>", "eval"), namespace)
+ return eval(compile_(_ast, "<eval>", "eval"), namespace)
def write_hy_as_pyc(fname):
@@ -88,7 +92,7 @@
timestamp = long(os.stat(fname).st_mtime)
_ast = import_file_to_ast(fname)
- code = compile(_ast, fname, "exec")
+ code = compile_(_ast, fname, "exec")
cfile = "%s.pyc" % fname[:-len(".hy")]
with open(cfile, 'wb') as fc:
| {"golden_diff": "diff --git a/hy/importer.py b/hy/importer.py\n--- a/hy/importer.py\n+++ b/hy/importer.py\n@@ -31,7 +31,7 @@\n import sys\n import ast\n import os\n-\n+import __future__\n \n if sys.version_info[0] >= 3:\n from io import StringIO\n@@ -39,6 +39,10 @@\n from StringIO import StringIO # NOQA\n \n \n+def compile_(ast, filename, mode):\n+ return compile(ast, filename, mode, __future__.CO_FUTURE_DIVISION)\n+\n+\n def import_buffer_to_hst(fd):\n tree = tokenize(fd.read() + \"\\n\")\n tree = process(tree)\n@@ -65,7 +69,7 @@\n _ast = import_file_to_ast(fpath)\n mod = imp.new_module(name)\n mod.__file__ = fpath\n- eval(compile(_ast, fpath, \"exec\"), mod.__dict__)\n+ eval(compile_(_ast, fpath, \"exec\"), mod.__dict__)\n return mod\n \n \n@@ -77,7 +81,7 @@\n foo.end_column = 0\n hytree.replace(foo)\n _ast = hy_compile(hytree, root=ast.Expression)\n- return eval(compile(_ast, \"<eval>\", \"eval\"), namespace)\n+ return eval(compile_(_ast, \"<eval>\", \"eval\"), namespace)\n \n \n def write_hy_as_pyc(fname):\n@@ -88,7 +92,7 @@\n timestamp = long(os.stat(fname).st_mtime)\n \n _ast = import_file_to_ast(fname)\n- code = compile(_ast, fname, \"exec\")\n+ code = compile_(_ast, fname, \"exec\")\n cfile = \"%s.pyc\" % fname[:-len(\".hy\")]\n \n with open(cfile, 'wb') as fc:\n", "issue": "Unifying division\nSince we are effectively creating a new language, we might as well fix one of the nastiest Python portability problems between 2 and 3: division. I propose to do an implicit \"from **future** import division\" at the top of any Hy module, as well as before starting the REPL, when running under Python 2.x.\n\n", "before_files": [{"content": "# Copyright (c) 2013 Paul Tagliamonte <[email protected]>\n#\n# Permission is hereby granted, free of charge, to any person obtaining a\n# copy of this software and associated documentation files (the \"Software\"),\n# to deal in the Software without restriction, including without limitation\n# the rights to use, copy, modify, merge, publish, distribute, sublicense,\n# and/or sell copies of the Software, and to permit persons to whom the\n# Software is furnished to do so, subject to the following conditions:\n#\n# The above copyright notice and this permission notice shall be included in\n# all copies or substantial portions of the Software.\n#\n# THE SOFTWARE IS PROVIDED \"AS IS\", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR\n# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,\n# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL\n# THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER\n# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING\n# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER\n# DEALINGS IN THE SOFTWARE.\n\nfrom py_compile import wr_long, MAGIC\nfrom hy.compiler import hy_compile\nfrom hy.models import HyObject\nfrom hy.core import process\nfrom hy.lex import tokenize\n\n\nfrom io import open\nimport marshal\nimport imp\nimport sys\nimport ast\nimport os\n\n\nif sys.version_info[0] >= 3:\n from io import StringIO\nelse:\n from StringIO import StringIO # NOQA\n\n\ndef import_buffer_to_hst(fd):\n tree = tokenize(fd.read() + \"\\n\")\n tree = process(tree)\n return tree\n\n\ndef import_file_to_hst(fpath):\n return import_buffer_to_hst(open(fpath, 'r', encoding='utf-8'))\n\n\ndef import_file_to_ast(fpath):\n tree = import_file_to_hst(fpath)\n _ast = hy_compile(tree)\n return _ast\n\n\ndef import_string_to_ast(buff):\n tree = import_buffer_to_hst(StringIO(buff))\n _ast = hy_compile(tree)\n return _ast\n\n\ndef import_file_to_module(name, fpath):\n _ast = import_file_to_ast(fpath)\n mod = imp.new_module(name)\n mod.__file__ = fpath\n eval(compile(_ast, fpath, \"exec\"), mod.__dict__)\n return mod\n\n\ndef hy_eval(hytree, namespace):\n foo = HyObject()\n foo.start_line = 0\n foo.end_line = 0\n foo.start_column = 0\n foo.end_column = 0\n hytree.replace(foo)\n _ast = hy_compile(hytree, root=ast.Expression)\n return eval(compile(_ast, \"<eval>\", \"eval\"), namespace)\n\n\ndef write_hy_as_pyc(fname):\n with open(fname, 'U') as f:\n try:\n timestamp = long(os.fstat(f.fileno()).st_mtime)\n except AttributeError:\n timestamp = long(os.stat(fname).st_mtime)\n\n _ast = import_file_to_ast(fname)\n code = compile(_ast, fname, \"exec\")\n cfile = \"%s.pyc\" % fname[:-len(\".hy\")]\n\n with open(cfile, 'wb') as fc:\n fc.write('\\0\\0\\0\\0')\n wr_long(fc, timestamp)\n marshal.dump(code, fc)\n fc.flush()\n fc.seek(0, 0)\n fc.write(MAGIC)\n\n\nclass HyFinder(object):\n def is_package(self, fullname):\n dirpath = \"/\".join(fullname.split(\".\"))\n for pth in sys.path:\n pth = os.path.abspath(pth)\n composed_path = \"%s/%s/__init__.hy\" % (pth, dirpath)\n if os.path.exists(composed_path):\n return True\n return False\n\n def find_on_path(self, fullname):\n fls = [\"%s/__init__.hy\", \"%s.hy\"]\n dirpath = \"/\".join(fullname.split(\".\"))\n\n for pth in sys.path:\n pth = os.path.abspath(pth)\n for fp in fls:\n composed_path = fp % (\"%s/%s\" % (pth, dirpath))\n if os.path.exists(composed_path):\n return composed_path\n\n\nclass MetaLoader(HyFinder):\n def load_module(self, fullname):\n if fullname in sys.modules:\n return sys.modules[fullname]\n\n pth = self.find_on_path(fullname)\n if pth is None:\n return\n\n sys.modules[fullname] = None\n mod = import_file_to_module(fullname, pth)\n\n ispkg = self.is_package(fullname)\n\n mod.__file__ = pth\n mod.__loader__ = self\n mod.__name__ = fullname\n\n if ispkg:\n mod.__path__ = []\n mod.__package__ = fullname\n else:\n mod.__package__ = fullname.rpartition('.')[0]\n\n sys.modules[fullname] = mod\n return mod\n\n\nclass MetaImporter(HyFinder):\n def find_module(self, fullname, path=None):\n pth = self.find_on_path(fullname)\n if pth is None:\n return\n return MetaLoader()\n\n\nsys.meta_path.append(MetaImporter())\nsys.path.insert(0, \"\")\n", "path": "hy/importer.py"}]} | 2,152 | 415 |
gh_patches_debug_4093 | rasdani/github-patches | git_diff | Textualize__rich-2201 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
[BUG] SVG gets surrounded in a black box
**Describe the bug**
Making an SVG, ideally a light-mode SVG, creates a black box around the terminal with square edges. Ideally, I think, the corners could be rounded to match the terminal application, otherwise, the box should be removed. Or both + a drop shadow, which would look really nice, I think. This is on the `terminal` div.
(I'm not sure why this only shows the top corner in the GitHub preview, but you still the extra box corner a bit there depending on your GitHub mode. Hey, you can click it and see the whole thing, nice! Thought it does lose some but not all of the styling. Though I'd also really like a way to just display the inner contents too with color inline. Anyway, back to the issue...)
PNG images to illustrate:
<img width="109" alt="Screen Shot 2022-04-05 at 2 43 45 PM" src="https://user-images.githubusercontent.com/4616906/161827390-eb475297-4a1f-4cb0-aefd-470bedc8eb1a.png">
<img width="308" alt="Screen Shot 2022-04-05 at 2 43 54 PM" src="https://user-images.githubusercontent.com/4616906/161827398-0d7c6cfa-2509-435e-96d3-461c6cb50dba.png">
Ahhh, this might be a Safari bug. There's a border radius already, but it's not showing up on the the `terminal` div. Replacing outline with `box-shadow: black 5px 5px 10px;` does look fantastic, though, and that does follow the curved outline even on Safari.
<img width="507" alt="Screen Shot 2022-04-05 at 2 57 47 PM" src="https://user-images.githubusercontent.com/4616906/161830253-68c59e87-bf3d-4e5e-8682-9bd29c175649.png">
This seems to be a bug on Safari (https://github.com/tailwindlabs/tailwindcss/discussions/7649 and others) that used to be present on other browsers, but now mostly Safari.
**Platform**
<details>
<summary>Click to expand</summary>
What platform (Win/Linux/Mac) are you running on? What terminal software are you using?
macOS, Safari.
I may ask you to copy and paste the output of the following commands. It may save some time if you do it now.
If you're using Rich in a terminal:
```console
$ python -m rich.diagnose
╭───────────────────────── <class 'rich.console.Console'> ─────────────────────────╮
│ A high level console interface. │
│ │
│ ╭──────────────────────────────────────────────────────────────────────────────╮ │
│ │ <console width=193 ColorSystem.TRUECOLOR> │ │
│ ╰──────────────────────────────────────────────────────────────────────────────╯ │
│ │
│ color_system = 'truecolor' │
│ encoding = 'utf-8' │
│ file = <_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'> │
│ height = 75 │
│ is_alt_screen = False │
│ is_dumb_terminal = False │
│ is_interactive = True │
│ is_jupyter = False │
│ is_terminal = True │
│ legacy_windows = False │
│ no_color = False │
│ options = ConsoleOptions( │
│ size=ConsoleDimensions(width=193, height=75), │
│ legacy_windows=False, │
│ min_width=1, │
│ max_width=193, │
│ is_terminal=True, │
│ encoding='utf-8', │
│ max_height=75, │
│ justify=None, │
│ overflow=None, │
│ no_wrap=False, │
│ highlight=None, │
│ markup=None, │
│ height=None │
│ ) │
│ quiet = False │
│ record = False │
│ safe_box = True │
│ size = ConsoleDimensions(width=193, height=75) │
│ soft_wrap = False │
│ stderr = False │
│ style = None │
│ tab_size = 8 │
│ width = 193 │
╰──────────────────────────────────────────────────────────────────────────────────╯
╭─── <class 'rich._windows.WindowsConsoleFeatures'> ────╮
│ Windows features available. │
│ │
│ ╭───────────────────────────────────────────────────╮ │
│ │ WindowsConsoleFeatures(vt=False, truecolor=False) │ │
│ ╰───────────────────────────────────────────────────╯ │
│ │
│ truecolor = False │
│ vt = False │
╰───────────────────────────────────────────────────────╯
╭────── Environment Variables ───────╮
│ { │
│ 'TERM': 'xterm-256color', │
│ 'COLORTERM': 'truecolor', │
│ 'CLICOLOR': None, │
│ 'NO_COLOR': None, │
│ 'TERM_PROGRAM': 'iTerm.app', │
│ 'COLUMNS': None, │
│ 'LINES': None, │
│ 'JPY_PARENT_PID': None, │
│ 'VSCODE_VERBOSE_LOGGING': None │
│ } │
╰────────────────────────────────────╯
platform="Darwin"
$ pip freeze | grep rich
rich==12.2.0
```
</details>
PS: it was really trivial to add this to my app, and is amazing, love the feature! Don't want to sound negative opening an issue. :D
</issue>
<code>
[start of rich/_export_format.py]
1 CONSOLE_HTML_FORMAT = """\
2 <!DOCTYPE html>
3 <head>
4 <meta charset="UTF-8">
5 <style>
6 {stylesheet}
7 body {{
8 color: {foreground};
9 background-color: {background};
10 }}
11 </style>
12 </head>
13 <html>
14 <body>
15 <code>
16 <pre style="font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace">{code}</pre>
17 </code>
18 </body>
19 </html>
20 """
21
22 CONSOLE_SVG_FORMAT = """\
23 <svg width="{total_width}" height="{total_height}" viewBox="0 0 {total_width} {total_height}"
24 xmlns="http://www.w3.org/2000/svg">
25 <style>
26 @font-face {{
27 font-family: "{font_family}";
28 src: local("FiraCode-Regular"),
29 url("https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff2/FiraCode-Regular.woff2") format("woff2"),
30 url("https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff/FiraCode-Regular.woff") format("woff");
31 font-style: normal;
32 font-weight: 400;
33 }}
34 @font-face {{
35 font-family: "{font_family}";
36 src: local("FiraCode-Bold"),
37 url("https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff2/FiraCode-Bold.woff2") format("woff2"),
38 url("https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff/FiraCode-Bold.woff") format("woff");
39 font-style: bold;
40 font-weight: 700;
41 }}
42 .{classes_prefix}-terminal-wrapper span {{
43 display: inline-block;
44 white-space: pre;
45 vertical-align: top;
46 font-size: {font_size}px;
47 font-family:'{font_family}','Cascadia Code',Monaco,Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace;
48 }}
49 .{classes_prefix}-terminal-wrapper a {{
50 text-decoration: none;
51 color: inherit;
52 }}
53 .{classes_prefix}-terminal-body .blink {{
54 animation: {classes_prefix}-blinker 1s infinite;
55 }}
56 @keyframes {classes_prefix}-blinker {{
57 from {{ opacity: 1.0; }}
58 50% {{ opacity: 0.3; }}
59 to {{ opacity: 1.0; }}
60 }}
61 .{classes_prefix}-terminal-wrapper {{
62 padding: {margin}px;
63 padding-top: 100px;
64 }}
65 .{classes_prefix}-terminal {{
66 position: relative;
67 display: flex;
68 flex-direction: column;
69 align-items: center;
70 background-color: {theme_background_color};
71 border-radius: 14px;
72 outline: 1px solid #484848;
73 }}
74 .{classes_prefix}-terminal:after {{
75 position: absolute;
76 width: 100%;
77 height: 100%;
78 content: '';
79 border-radius: 14px;
80 background: rgb(71,77,102);
81 background: linear-gradient(90deg, #804D69 0%, #4E4B89 100%);
82 transform: rotate(-4.5deg);
83 z-index: -1;
84 }}
85 .{classes_prefix}-terminal-header {{
86 position: relative;
87 width: 100%;
88 background-color: #2e2e2e;
89 margin-bottom: 12px;
90 font-weight: bold;
91 border-radius: 14px 14px 0 0;
92 color: {theme_foreground_color};
93 font-size: 18px;
94 box-shadow: inset 0px -1px 0px 0px #4e4e4e,
95 inset 0px -4px 8px 0px #1a1a1a;
96 }}
97 .{classes_prefix}-terminal-title-tab {{
98 display: inline-block;
99 margin-top: 14px;
100 margin-left: 124px;
101 font-family: sans-serif;
102 padding: 14px 28px;
103 border-radius: 6px 6px 0 0;
104 background-color: {theme_background_color};
105 box-shadow: inset 0px 1px 0px 0px #4e4e4e,
106 0px -4px 4px 0px #1e1e1e,
107 inset 1px 0px 0px 0px #4e4e4e,
108 inset -1px 0px 0px 0px #4e4e4e;
109 }}
110 .{classes_prefix}-terminal-traffic-lights {{
111 position: absolute;
112 top: 24px;
113 left: 20px;
114 }}
115 .{classes_prefix}-terminal-body {{
116 line-height: {line_height}px;
117 padding: 14px;
118 }}
119 {stylesheet}
120 </style>
121 <foreignObject x="0" y="0" width="100%" height="100%">
122 <body xmlns="http://www.w3.org/1999/xhtml">
123 <div class="{classes_prefix}-terminal-wrapper">
124 <div class="{classes_prefix}-terminal">
125 <div class="{classes_prefix}-terminal-header">
126 <svg class="{classes_prefix}-terminal-traffic-lights" width="90" height="21" viewBox="0 0 90 21" xmlns="http://www.w3.org/2000/svg">
127 <circle cx="14" cy="8" r="8" fill="#ff6159"/>
128 <circle cx="38" cy="8" r="8" fill="#ffbd2e"/>
129 <circle cx="62" cy="8" r="8" fill="#28c941"/>
130 </svg>
131 <div class="{classes_prefix}-terminal-title-tab">{title}</div>
132 </div>
133 <div class="{classes_prefix}-terminal-body">
134 {code}
135 </div>
136 </div>
137 </div>
138 </body>
139 </foreignObject>
140 </svg>
141 """
142
143 _SVG_FONT_FAMILY = "Rich Fira Code"
144 _SVG_CLASSES_PREFIX = "rich-svg"
145
[end of rich/_export_format.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/rich/_export_format.py b/rich/_export_format.py
--- a/rich/_export_format.py
+++ b/rich/_export_format.py
@@ -69,7 +69,7 @@
align-items: center;
background-color: {theme_background_color};
border-radius: 14px;
- outline: 1px solid #484848;
+ box-shadow: 0 0 0 1px #484848;
}}
.{classes_prefix}-terminal:after {{
position: absolute;
| {"golden_diff": "diff --git a/rich/_export_format.py b/rich/_export_format.py\n--- a/rich/_export_format.py\n+++ b/rich/_export_format.py\n@@ -69,7 +69,7 @@\n align-items: center;\n background-color: {theme_background_color};\n border-radius: 14px;\n- outline: 1px solid #484848;\n+ box-shadow: 0 0 0 1px #484848;\n }}\n .{classes_prefix}-terminal:after {{\n position: absolute;\n", "issue": "[BUG] SVG gets surrounded in a black box\n**Describe the bug**\r\n\r\nMaking an SVG, ideally a light-mode SVG, creates a black box around the terminal with square edges. Ideally, I think, the corners could be rounded to match the terminal application, otherwise, the box should be removed. Or both + a drop shadow, which would look really nice, I think. This is on the `terminal` div.\r\n\r\n\r\n\r\n(I'm not sure why this only shows the top corner in the GitHub preview, but you still the extra box corner a bit there depending on your GitHub mode. Hey, you can click it and see the whole thing, nice! Thought it does lose some but not all of the styling. Though I'd also really like a way to just display the inner contents too with color inline. Anyway, back to the issue...)\r\n\r\nPNG images to illustrate:\r\n\r\n<img width=\"109\" alt=\"Screen Shot 2022-04-05 at 2 43 45 PM\" src=\"https://user-images.githubusercontent.com/4616906/161827390-eb475297-4a1f-4cb0-aefd-470bedc8eb1a.png\">\r\n\r\n<img width=\"308\" alt=\"Screen Shot 2022-04-05 at 2 43 54 PM\" src=\"https://user-images.githubusercontent.com/4616906/161827398-0d7c6cfa-2509-435e-96d3-461c6cb50dba.png\">\r\n\r\nAhhh, this might be a Safari bug. There's a border radius already, but it's not showing up on the the `terminal` div. Replacing outline with `box-shadow: black 5px 5px 10px;` does look fantastic, though, and that does follow the curved outline even on Safari.\r\n\r\n<img width=\"507\" alt=\"Screen Shot 2022-04-05 at 2 57 47 PM\" src=\"https://user-images.githubusercontent.com/4616906/161830253-68c59e87-bf3d-4e5e-8682-9bd29c175649.png\">\r\n\r\n\r\nThis seems to be a bug on Safari (https://github.com/tailwindlabs/tailwindcss/discussions/7649 and others) that used to be present on other browsers, but now mostly Safari.\r\n\r\n**Platform**\r\n<details>\r\n<summary>Click to expand</summary>\r\n\r\nWhat platform (Win/Linux/Mac) are you running on? What terminal software are you using?\r\n\r\nmacOS, Safari.\r\n\r\nI may ask you to copy and paste the output of the following commands. It may save some time if you do it now.\r\n\r\nIf you're using Rich in a terminal:\r\n\r\n```console\r\n$ python -m rich.diagnose\r\n\u256d\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500 <class 'rich.console.Console'> \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\r\n\u2502 A high level console interface. \u2502\r\n\u2502 \u2502\r\n\u2502 \u256d\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e \u2502\r\n\u2502 \u2502 <console width=193 ColorSystem.TRUECOLOR> \u2502 \u2502\r\n\u2502 \u2570\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f \u2502\r\n\u2502 \u2502\r\n\u2502 color_system = 'truecolor' \u2502\r\n\u2502 encoding = 'utf-8' \u2502\r\n\u2502 file = <_io.TextIOWrapper name='<stdout>' mode='w' encoding='utf-8'> \u2502\r\n\u2502 height = 75 \u2502\r\n\u2502 is_alt_screen = False \u2502\r\n\u2502 is_dumb_terminal = False \u2502\r\n\u2502 is_interactive = True \u2502\r\n\u2502 is_jupyter = False \u2502\r\n\u2502 is_terminal = True \u2502\r\n\u2502 legacy_windows = False \u2502\r\n\u2502 no_color = False \u2502\r\n\u2502 options = ConsoleOptions( \u2502\r\n\u2502 size=ConsoleDimensions(width=193, height=75), \u2502\r\n\u2502 legacy_windows=False, \u2502\r\n\u2502 min_width=1, \u2502\r\n\u2502 max_width=193, \u2502\r\n\u2502 is_terminal=True, \u2502\r\n\u2502 encoding='utf-8', \u2502\r\n\u2502 max_height=75, \u2502\r\n\u2502 justify=None, \u2502\r\n\u2502 overflow=None, \u2502\r\n\u2502 no_wrap=False, \u2502\r\n\u2502 highlight=None, \u2502\r\n\u2502 markup=None, \u2502\r\n\u2502 height=None \u2502\r\n\u2502 ) \u2502\r\n\u2502 quiet = False \u2502\r\n\u2502 record = False \u2502\r\n\u2502 safe_box = True \u2502\r\n\u2502 size = ConsoleDimensions(width=193, height=75) \u2502\r\n\u2502 soft_wrap = False \u2502\r\n\u2502 stderr = False \u2502\r\n\u2502 style = None \u2502\r\n\u2502 tab_size = 8 \u2502\r\n\u2502 width = 193 \u2502\r\n\u2570\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\r\n\u256d\u2500\u2500\u2500 <class 'rich._windows.WindowsConsoleFeatures'> \u2500\u2500\u2500\u2500\u256e\r\n\u2502 Windows features available. \u2502\r\n\u2502 \u2502\r\n\u2502 \u256d\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e \u2502\r\n\u2502 \u2502 WindowsConsoleFeatures(vt=False, truecolor=False) \u2502 \u2502\r\n\u2502 \u2570\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f \u2502\r\n\u2502 \u2502\r\n\u2502 truecolor = False \u2502\r\n\u2502 vt = False \u2502\r\n\u2570\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\r\n\u256d\u2500\u2500\u2500\u2500\u2500\u2500 Environment Variables \u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256e\r\n\u2502 { \u2502\r\n\u2502 'TERM': 'xterm-256color', \u2502\r\n\u2502 'COLORTERM': 'truecolor', \u2502\r\n\u2502 'CLICOLOR': None, \u2502\r\n\u2502 'NO_COLOR': None, \u2502\r\n\u2502 'TERM_PROGRAM': 'iTerm.app', \u2502\r\n\u2502 'COLUMNS': None, \u2502\r\n\u2502 'LINES': None, \u2502\r\n\u2502 'JPY_PARENT_PID': None, \u2502\r\n\u2502 'VSCODE_VERBOSE_LOGGING': None \u2502\r\n\u2502 } \u2502\r\n\u2570\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u256f\r\nplatform=\"Darwin\"\r\n$ pip freeze | grep rich\r\nrich==12.2.0\r\n```\r\n\r\n\r\n</details>\r\n\r\nPS: it was really trivial to add this to my app, and is amazing, love the feature! Don't want to sound negative opening an issue. :D\r\n\n", "before_files": [{"content": "CONSOLE_HTML_FORMAT = \"\"\"\\\n<!DOCTYPE html>\n<head>\n<meta charset=\"UTF-8\">\n<style>\n{stylesheet}\nbody {{\n color: {foreground};\n background-color: {background};\n}}\n</style>\n</head>\n<html>\n<body>\n <code>\n <pre style=\"font-family:Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace\">{code}</pre>\n </code>\n</body>\n</html>\n\"\"\"\n\nCONSOLE_SVG_FORMAT = \"\"\"\\\n<svg width=\"{total_width}\" height=\"{total_height}\" viewBox=\"0 0 {total_width} {total_height}\"\n xmlns=\"http://www.w3.org/2000/svg\">\n <style>\n @font-face {{\n font-family: \"{font_family}\";\n src: local(\"FiraCode-Regular\"),\n url(\"https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff2/FiraCode-Regular.woff2\") format(\"woff2\"),\n url(\"https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff/FiraCode-Regular.woff\") format(\"woff\");\n font-style: normal;\n font-weight: 400;\n }}\n @font-face {{\n font-family: \"{font_family}\";\n src: local(\"FiraCode-Bold\"),\n url(\"https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff2/FiraCode-Bold.woff2\") format(\"woff2\"),\n url(\"https://cdnjs.cloudflare.com/ajax/libs/firacode/6.2.0/woff/FiraCode-Bold.woff\") format(\"woff\");\n font-style: bold;\n font-weight: 700;\n }}\n .{classes_prefix}-terminal-wrapper span {{\n display: inline-block;\n white-space: pre;\n vertical-align: top;\n font-size: {font_size}px;\n font-family:'{font_family}','Cascadia Code',Monaco,Menlo,'DejaVu Sans Mono',consolas,'Courier New',monospace;\n }}\n .{classes_prefix}-terminal-wrapper a {{\n text-decoration: none;\n color: inherit;\n }}\n .{classes_prefix}-terminal-body .blink {{\n animation: {classes_prefix}-blinker 1s infinite;\n }}\n @keyframes {classes_prefix}-blinker {{\n from {{ opacity: 1.0; }}\n 50% {{ opacity: 0.3; }}\n to {{ opacity: 1.0; }}\n }}\n .{classes_prefix}-terminal-wrapper {{\n padding: {margin}px;\n padding-top: 100px;\n }}\n .{classes_prefix}-terminal {{\n position: relative;\n display: flex;\n flex-direction: column;\n align-items: center;\n background-color: {theme_background_color};\n border-radius: 14px;\n outline: 1px solid #484848;\n }}\n .{classes_prefix}-terminal:after {{\n position: absolute;\n width: 100%;\n height: 100%;\n content: '';\n border-radius: 14px;\n background: rgb(71,77,102);\n background: linear-gradient(90deg, #804D69 0%, #4E4B89 100%);\n transform: rotate(-4.5deg);\n z-index: -1;\n }}\n .{classes_prefix}-terminal-header {{\n position: relative;\n width: 100%;\n background-color: #2e2e2e;\n margin-bottom: 12px;\n font-weight: bold;\n border-radius: 14px 14px 0 0;\n color: {theme_foreground_color};\n font-size: 18px;\n box-shadow: inset 0px -1px 0px 0px #4e4e4e,\n inset 0px -4px 8px 0px #1a1a1a;\n }}\n .{classes_prefix}-terminal-title-tab {{\n display: inline-block;\n margin-top: 14px;\n margin-left: 124px;\n font-family: sans-serif;\n padding: 14px 28px;\n border-radius: 6px 6px 0 0;\n background-color: {theme_background_color};\n box-shadow: inset 0px 1px 0px 0px #4e4e4e,\n 0px -4px 4px 0px #1e1e1e,\n inset 1px 0px 0px 0px #4e4e4e,\n inset -1px 0px 0px 0px #4e4e4e;\n }}\n .{classes_prefix}-terminal-traffic-lights {{\n position: absolute;\n top: 24px;\n left: 20px;\n }}\n .{classes_prefix}-terminal-body {{\n line-height: {line_height}px;\n padding: 14px;\n }}\n {stylesheet}\n </style>\n <foreignObject x=\"0\" y=\"0\" width=\"100%\" height=\"100%\">\n <body xmlns=\"http://www.w3.org/1999/xhtml\">\n <div class=\"{classes_prefix}-terminal-wrapper\">\n <div class=\"{classes_prefix}-terminal\">\n <div class=\"{classes_prefix}-terminal-header\">\n <svg class=\"{classes_prefix}-terminal-traffic-lights\" width=\"90\" height=\"21\" viewBox=\"0 0 90 21\" xmlns=\"http://www.w3.org/2000/svg\">\n <circle cx=\"14\" cy=\"8\" r=\"8\" fill=\"#ff6159\"/>\n <circle cx=\"38\" cy=\"8\" r=\"8\" fill=\"#ffbd2e\"/>\n <circle cx=\"62\" cy=\"8\" r=\"8\" fill=\"#28c941\"/>\n </svg>\n <div class=\"{classes_prefix}-terminal-title-tab\">{title}</div>\n </div>\n <div class=\"{classes_prefix}-terminal-body\">\n {code}\n </div>\n </div>\n </div>\n </body>\n </foreignObject>\n</svg>\n\"\"\"\n\n_SVG_FONT_FAMILY = \"Rich Fira Code\"\n_SVG_CLASSES_PREFIX = \"rich-svg\"\n", "path": "rich/_export_format.py"}]} | 3,770 | 127 |
gh_patches_debug_63306 | rasdani/github-patches | git_diff | scikit-hep__pyhf-363 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
consolidation: add simplemodls to __all__
# Description
It would be nice if the snippet in the README could be shorter:
right now this is needed
```
import pyhf
import pyhf.simplemodels
pdf = pyhf.simplemodels.hepdata_like(signal_data=[12.0], bkg_data=[50.0], bkg_uncerts=[3.0])
CLs_obs = pyhf.utils.hypotest(1.0, [51] + pdf.config.auxdata, pdf)
```
whereas if we pre-import `simplemodels` it could be
```
import pyhf
pdf = pyhf.simplemodels.hepdata_like(signal_data=[12.0], bkg_data=[50.0], bkg_uncerts=[3.0])
CLs_obs = pyhf.utils.hypotest(1.0, [51] + pdf.config.auxdata, pdf)
```
since `simplemodels.py` doesn't add much code, i don't think it would slow down things a lot
</issue>
<code>
[start of pyhf/__init__.py]
1 from .tensor import BackendRetriever as tensor
2 from .optimize import OptimizerRetriever as optimize
3 from .version import __version__
4 from . import events
5
6 tensorlib = tensor.numpy_backend()
7 default_backend = tensorlib
8 optimizer = optimize.scipy_optimizer()
9 default_optimizer = optimizer
10
11
12 def get_backend():
13 """
14 Get the current backend and the associated optimizer
15
16 Example:
17 >>> import pyhf
18 >>> pyhf.get_backend()
19 (<pyhf.tensor.numpy_backend.numpy_backend object at 0x...>, <pyhf.optimize.opt_scipy.scipy_optimizer object at 0x...>)
20
21 Returns:
22 backend, optimizer
23 """
24 global tensorlib
25 global optimizer
26 return tensorlib, optimizer
27
28
29 @events.register('change_backend')
30 def set_backend(backend, custom_optimizer=None):
31 """
32 Set the backend and the associated optimizer
33
34 Example:
35 >>> import pyhf
36 >>> import tensorflow as tf
37 >>> pyhf.set_backend(pyhf.tensor.tensorflow_backend(session=tf.Session()))
38
39 Args:
40 backend: One of the supported pyhf backends: NumPy,
41 TensorFlow, PyTorch, and MXNet
42
43 Returns:
44 None
45 """
46 global tensorlib
47 global optimizer
48
49 # need to determine if the tensorlib changed or the optimizer changed for events
50 tensorlib_changed = bool(backend.name != tensorlib.name)
51 optimizer_changed = False
52
53 if backend.name == 'tensorflow':
54 new_optimizer = (
55 custom_optimizer if custom_optimizer else optimize.tflow_optimizer(backend)
56 )
57 if tensorlib.name == 'tensorflow':
58 tensorlib_changed |= bool(backend.session != tensorlib.session)
59 elif backend.name == 'pytorch':
60 new_optimizer = (
61 custom_optimizer
62 if custom_optimizer
63 else optimize.pytorch_optimizer(tensorlib=backend)
64 )
65 # TODO: Add support for mxnet_optimizer()
66 # elif tensorlib.name == 'mxnet':
67 # new_optimizer = custom_optimizer if custom_optimizer else mxnet_optimizer()
68 else:
69 new_optimizer = (
70 custom_optimizer if custom_optimizer else optimize.scipy_optimizer()
71 )
72
73 optimizer_changed = bool(optimizer != new_optimizer)
74 # set new backend
75 tensorlib = backend
76 optimizer = new_optimizer
77 # trigger events
78 if tensorlib_changed:
79 events.trigger("tensorlib_changed")()
80 if optimizer_changed:
81 events.trigger("optimizer_changed")()
82
83
84 from .pdf import Model
85
86 __all__ = ['Model', 'utils', 'modifiers', '__version__']
87
[end of pyhf/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pyhf/__init__.py b/pyhf/__init__.py
--- a/pyhf/__init__.py
+++ b/pyhf/__init__.py
@@ -82,5 +82,6 @@
from .pdf import Model
+from . import simplemodels
-__all__ = ['Model', 'utils', 'modifiers', '__version__']
+__all__ = ['Model', 'utils', 'modifiers', 'simplemodels', '__version__']
| {"golden_diff": "diff --git a/pyhf/__init__.py b/pyhf/__init__.py\n--- a/pyhf/__init__.py\n+++ b/pyhf/__init__.py\n@@ -82,5 +82,6 @@\n \n \n from .pdf import Model\n+from . import simplemodels\n \n-__all__ = ['Model', 'utils', 'modifiers', '__version__']\n+__all__ = ['Model', 'utils', 'modifiers', 'simplemodels', '__version__']\n", "issue": "consolidation: add simplemodls to __all__\n# Description\r\n\r\nIt would be nice if the snippet in the README could be shorter:\r\n\r\nright now this is needed\r\n```\r\nimport pyhf\r\nimport pyhf.simplemodels\r\npdf = pyhf.simplemodels.hepdata_like(signal_data=[12.0], bkg_data=[50.0], bkg_uncerts=[3.0])\r\nCLs_obs = pyhf.utils.hypotest(1.0, [51] + pdf.config.auxdata, pdf)\r\n```\r\n\r\nwhereas if we pre-import `simplemodels` it could be \r\n```\r\nimport pyhf\r\npdf = pyhf.simplemodels.hepdata_like(signal_data=[12.0], bkg_data=[50.0], bkg_uncerts=[3.0])\r\nCLs_obs = pyhf.utils.hypotest(1.0, [51] + pdf.config.auxdata, pdf)\r\n```\r\n\r\nsince `simplemodels.py` doesn't add much code, i don't think it would slow down things a lot\n", "before_files": [{"content": "from .tensor import BackendRetriever as tensor\nfrom .optimize import OptimizerRetriever as optimize\nfrom .version import __version__\nfrom . import events\n\ntensorlib = tensor.numpy_backend()\ndefault_backend = tensorlib\noptimizer = optimize.scipy_optimizer()\ndefault_optimizer = optimizer\n\n\ndef get_backend():\n \"\"\"\n Get the current backend and the associated optimizer\n\n Example:\n >>> import pyhf\n >>> pyhf.get_backend()\n (<pyhf.tensor.numpy_backend.numpy_backend object at 0x...>, <pyhf.optimize.opt_scipy.scipy_optimizer object at 0x...>)\n\n Returns:\n backend, optimizer\n \"\"\"\n global tensorlib\n global optimizer\n return tensorlib, optimizer\n\n\[email protected]('change_backend')\ndef set_backend(backend, custom_optimizer=None):\n \"\"\"\n Set the backend and the associated optimizer\n\n Example:\n >>> import pyhf\n >>> import tensorflow as tf\n >>> pyhf.set_backend(pyhf.tensor.tensorflow_backend(session=tf.Session()))\n\n Args:\n backend: One of the supported pyhf backends: NumPy,\n TensorFlow, PyTorch, and MXNet\n\n Returns:\n None\n \"\"\"\n global tensorlib\n global optimizer\n\n # need to determine if the tensorlib changed or the optimizer changed for events\n tensorlib_changed = bool(backend.name != tensorlib.name)\n optimizer_changed = False\n\n if backend.name == 'tensorflow':\n new_optimizer = (\n custom_optimizer if custom_optimizer else optimize.tflow_optimizer(backend)\n )\n if tensorlib.name == 'tensorflow':\n tensorlib_changed |= bool(backend.session != tensorlib.session)\n elif backend.name == 'pytorch':\n new_optimizer = (\n custom_optimizer\n if custom_optimizer\n else optimize.pytorch_optimizer(tensorlib=backend)\n )\n # TODO: Add support for mxnet_optimizer()\n # elif tensorlib.name == 'mxnet':\n # new_optimizer = custom_optimizer if custom_optimizer else mxnet_optimizer()\n else:\n new_optimizer = (\n custom_optimizer if custom_optimizer else optimize.scipy_optimizer()\n )\n\n optimizer_changed = bool(optimizer != new_optimizer)\n # set new backend\n tensorlib = backend\n optimizer = new_optimizer\n # trigger events\n if tensorlib_changed:\n events.trigger(\"tensorlib_changed\")()\n if optimizer_changed:\n events.trigger(\"optimizer_changed\")()\n\n\nfrom .pdf import Model\n\n__all__ = ['Model', 'utils', 'modifiers', '__version__']\n", "path": "pyhf/__init__.py"}]} | 1,467 | 102 |
gh_patches_debug_27047 | rasdani/github-patches | git_diff | encode__starlette-761 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Background tasks exception handler
Currently, if a background task faces an exception, it isn't handled and there's no way to handle it (rather than wrapping the task)
My suggestion is to be able to add exception handler for background tasks, as there is for requests.
</issue>
<code>
[start of starlette/middleware/errors.py]
1 import asyncio
2 import html
3 import inspect
4 import traceback
5 import typing
6
7 from starlette.concurrency import run_in_threadpool
8 from starlette.requests import Request
9 from starlette.responses import HTMLResponse, PlainTextResponse, Response
10 from starlette.types import ASGIApp, Message, Receive, Scope, Send
11
12 STYLES = """
13 p {
14 color: #211c1c;
15 }
16 .traceback-container {
17 border: 1px solid #038BB8;
18 }
19 .traceback-title {
20 background-color: #038BB8;
21 color: lemonchiffon;
22 padding: 12px;
23 font-size: 20px;
24 margin-top: 0px;
25 }
26 .frame-line {
27 padding-left: 10px;
28 font-family: monospace;
29 }
30 .frame-filename {
31 font-family: monospace;
32 }
33 .center-line {
34 background-color: #038BB8;
35 color: #f9f6e1;
36 padding: 5px 0px 5px 5px;
37 }
38 .lineno {
39 margin-right: 5px;
40 }
41 .frame-title {
42 font-weight: unset;
43 padding: 10px 10px 10px 10px;
44 background-color: #E4F4FD;
45 margin-right: 10px;
46 color: #191f21;
47 font-size: 17px;
48 border: 1px solid #c7dce8;
49 }
50 .collapse-btn {
51 float: right;
52 padding: 0px 5px 1px 5px;
53 border: solid 1px #96aebb;
54 cursor: pointer;
55 }
56 .collapsed {
57 display: none;
58 }
59 .source-code {
60 font-family: courier;
61 font-size: small;
62 padding-bottom: 10px;
63 }
64 """
65
66 JS = """
67 <script type="text/javascript">
68 function collapse(element){
69 const frameId = element.getAttribute("data-frame-id");
70 const frame = document.getElementById(frameId);
71
72 if (frame.classList.contains("collapsed")){
73 element.innerHTML = "‒";
74 frame.classList.remove("collapsed");
75 } else {
76 element.innerHTML = "+";
77 frame.classList.add("collapsed");
78 }
79 }
80 </script>
81 """
82
83 TEMPLATE = """
84 <html>
85 <head>
86 <style type='text/css'>
87 {styles}
88 </style>
89 <title>Starlette Debugger</title>
90 </head>
91 <body>
92 <h1>500 Server Error</h1>
93 <h2>{error}</h2>
94 <div class="traceback-container">
95 <p class="traceback-title">Traceback</p>
96 <div>{exc_html}</div>
97 </div>
98 {js}
99 </body>
100 </html>
101 """
102
103 FRAME_TEMPLATE = """
104 <div>
105 <p class="frame-title">File <span class="frame-filename">{frame_filename}</span>,
106 line <i>{frame_lineno}</i>,
107 in <b>{frame_name}</b>
108 <span class="collapse-btn" data-frame-id="{frame_filename}-{frame_lineno}" onclick="collapse(this)">{collapse_button}</span>
109 </p>
110 <div id="{frame_filename}-{frame_lineno}" class="source-code {collapsed}">{code_context}</div>
111 </div>
112 """ # noqa: E501
113
114 LINE = """
115 <p><span class="frame-line">
116 <span class="lineno">{lineno}.</span> {line}</span></p>
117 """
118
119 CENTER_LINE = """
120 <p class="center-line"><span class="frame-line center-line">
121 <span class="lineno">{lineno}.</span> {line}</span></p>
122 """
123
124
125 class ServerErrorMiddleware:
126 """
127 Handles returning 500 responses when a server error occurs.
128
129 If 'debug' is set, then traceback responses will be returned,
130 otherwise the designated 'handler' will be called.
131
132 This middleware class should generally be used to wrap *everything*
133 else up, so that unhandled exceptions anywhere in the stack
134 always result in an appropriate 500 response.
135 """
136
137 def __init__(
138 self, app: ASGIApp, handler: typing.Callable = None, debug: bool = False
139 ) -> None:
140 self.app = app
141 self.handler = handler
142 self.debug = debug
143
144 async def __call__(self, scope: Scope, receive: Receive, send: Send) -> None:
145 if scope["type"] != "http":
146 await self.app(scope, receive, send)
147 return
148
149 response_started = False
150
151 async def _send(message: Message) -> None:
152 nonlocal response_started, send
153
154 if message["type"] == "http.response.start":
155 response_started = True
156 await send(message)
157
158 try:
159 await self.app(scope, receive, _send)
160 except Exception as exc:
161 if not response_started:
162 request = Request(scope)
163 if self.debug:
164 # In debug mode, return traceback responses.
165 response = self.debug_response(request, exc)
166 elif self.handler is None:
167 # Use our default 500 error handler.
168 response = self.error_response(request, exc)
169 else:
170 # Use an installed 500 error handler.
171 if asyncio.iscoroutinefunction(self.handler):
172 response = await self.handler(request, exc)
173 else:
174 response = await run_in_threadpool(self.handler, request, exc)
175
176 await response(scope, receive, send)
177
178 # We always continue to raise the exception.
179 # This allows servers to log the error, or allows test clients
180 # to optionally raise the error within the test case.
181 raise exc
182
183 def format_line(
184 self, index: int, line: str, frame_lineno: int, frame_index: int
185 ) -> str:
186 values = {
187 # HTML escape - line could contain < or >
188 "line": html.escape(line).replace(" ", " "),
189 "lineno": (frame_lineno - frame_index) + index,
190 }
191
192 if index != frame_index:
193 return LINE.format(**values)
194 return CENTER_LINE.format(**values)
195
196 def generate_frame_html(self, frame: inspect.FrameInfo, is_collapsed: bool) -> str:
197 code_context = "".join(
198 self.format_line(index, line, frame.lineno, frame.index) # type: ignore
199 for index, line in enumerate(frame.code_context or [])
200 )
201
202 values = {
203 # HTML escape - filename could contain < or >, especially if it's a virtual
204 # file e.g. <stdin> in the REPL
205 "frame_filename": html.escape(frame.filename),
206 "frame_lineno": frame.lineno,
207 # HTML escape - if you try very hard it's possible to name a function with <
208 # or >
209 "frame_name": html.escape(frame.function),
210 "code_context": code_context,
211 "collapsed": "collapsed" if is_collapsed else "",
212 "collapse_button": "+" if is_collapsed else "‒",
213 }
214 return FRAME_TEMPLATE.format(**values)
215
216 def generate_html(self, exc: Exception, limit: int = 7) -> str:
217 traceback_obj = traceback.TracebackException.from_exception(
218 exc, capture_locals=True
219 )
220
221 exc_html = ""
222 is_collapsed = False
223 exc_traceback = exc.__traceback__
224 if exc_traceback is not None:
225 frames = inspect.getinnerframes(exc_traceback, limit)
226 for frame in reversed(frames):
227 exc_html += self.generate_frame_html(frame, is_collapsed)
228 is_collapsed = True
229
230 # escape error class and text
231 error = (
232 f"{html.escape(traceback_obj.exc_type.__name__)}: "
233 f"{html.escape(str(traceback_obj))}"
234 )
235
236 return TEMPLATE.format(styles=STYLES, js=JS, error=error, exc_html=exc_html)
237
238 def generate_plain_text(self, exc: Exception) -> str:
239 return "".join(traceback.format_exception(type(exc), exc, exc.__traceback__))
240
241 def debug_response(self, request: Request, exc: Exception) -> Response:
242 accept = request.headers.get("accept", "")
243
244 if "text/html" in accept:
245 content = self.generate_html(exc)
246 return HTMLResponse(content, status_code=500)
247 content = self.generate_plain_text(exc)
248 return PlainTextResponse(content, status_code=500)
249
250 def error_response(self, request: Request, exc: Exception) -> Response:
251 return PlainTextResponse("Internal Server Error", status_code=500)
252
[end of starlette/middleware/errors.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/starlette/middleware/errors.py b/starlette/middleware/errors.py
--- a/starlette/middleware/errors.py
+++ b/starlette/middleware/errors.py
@@ -158,21 +158,21 @@
try:
await self.app(scope, receive, _send)
except Exception as exc:
- if not response_started:
- request = Request(scope)
- if self.debug:
- # In debug mode, return traceback responses.
- response = self.debug_response(request, exc)
- elif self.handler is None:
- # Use our default 500 error handler.
- response = self.error_response(request, exc)
+ request = Request(scope)
+ if self.debug:
+ # In debug mode, return traceback responses.
+ response = self.debug_response(request, exc)
+ elif self.handler is None:
+ # Use our default 500 error handler.
+ response = self.error_response(request, exc)
+ else:
+ # Use an installed 500 error handler.
+ if asyncio.iscoroutinefunction(self.handler):
+ response = await self.handler(request, exc)
else:
- # Use an installed 500 error handler.
- if asyncio.iscoroutinefunction(self.handler):
- response = await self.handler(request, exc)
- else:
- response = await run_in_threadpool(self.handler, request, exc)
+ response = await run_in_threadpool(self.handler, request, exc)
+ if not response_started:
await response(scope, receive, send)
# We always continue to raise the exception.
| {"golden_diff": "diff --git a/starlette/middleware/errors.py b/starlette/middleware/errors.py\n--- a/starlette/middleware/errors.py\n+++ b/starlette/middleware/errors.py\n@@ -158,21 +158,21 @@\n try:\n await self.app(scope, receive, _send)\n except Exception as exc:\n- if not response_started:\n- request = Request(scope)\n- if self.debug:\n- # In debug mode, return traceback responses.\n- response = self.debug_response(request, exc)\n- elif self.handler is None:\n- # Use our default 500 error handler.\n- response = self.error_response(request, exc)\n+ request = Request(scope)\n+ if self.debug:\n+ # In debug mode, return traceback responses.\n+ response = self.debug_response(request, exc)\n+ elif self.handler is None:\n+ # Use our default 500 error handler.\n+ response = self.error_response(request, exc)\n+ else:\n+ # Use an installed 500 error handler.\n+ if asyncio.iscoroutinefunction(self.handler):\n+ response = await self.handler(request, exc)\n else:\n- # Use an installed 500 error handler.\n- if asyncio.iscoroutinefunction(self.handler):\n- response = await self.handler(request, exc)\n- else:\n- response = await run_in_threadpool(self.handler, request, exc)\n+ response = await run_in_threadpool(self.handler, request, exc)\n \n+ if not response_started:\n await response(scope, receive, send)\n \n # We always continue to raise the exception.\n", "issue": "Background tasks exception handler\nCurrently, if a background task faces an exception, it isn't handled and there's no way to handle it (rather than wrapping the task)\r\nMy suggestion is to be able to add exception handler for background tasks, as there is for requests.\n", "before_files": [{"content": "import asyncio\nimport html\nimport inspect\nimport traceback\nimport typing\n\nfrom starlette.concurrency import run_in_threadpool\nfrom starlette.requests import Request\nfrom starlette.responses import HTMLResponse, PlainTextResponse, Response\nfrom starlette.types import ASGIApp, Message, Receive, Scope, Send\n\nSTYLES = \"\"\"\np {\n color: #211c1c;\n}\n.traceback-container {\n border: 1px solid #038BB8;\n}\n.traceback-title {\n background-color: #038BB8;\n color: lemonchiffon;\n padding: 12px;\n font-size: 20px;\n margin-top: 0px;\n}\n.frame-line {\n padding-left: 10px;\n font-family: monospace;\n}\n.frame-filename {\n font-family: monospace;\n}\n.center-line {\n background-color: #038BB8;\n color: #f9f6e1;\n padding: 5px 0px 5px 5px;\n}\n.lineno {\n margin-right: 5px;\n}\n.frame-title {\n font-weight: unset;\n padding: 10px 10px 10px 10px;\n background-color: #E4F4FD;\n margin-right: 10px;\n color: #191f21;\n font-size: 17px;\n border: 1px solid #c7dce8;\n}\n.collapse-btn {\n float: right;\n padding: 0px 5px 1px 5px;\n border: solid 1px #96aebb;\n cursor: pointer;\n}\n.collapsed {\n display: none;\n}\n.source-code {\n font-family: courier;\n font-size: small;\n padding-bottom: 10px;\n}\n\"\"\"\n\nJS = \"\"\"\n<script type=\"text/javascript\">\n function collapse(element){\n const frameId = element.getAttribute(\"data-frame-id\");\n const frame = document.getElementById(frameId);\n\n if (frame.classList.contains(\"collapsed\")){\n element.innerHTML = \"‒\";\n frame.classList.remove(\"collapsed\");\n } else {\n element.innerHTML = \"+\";\n frame.classList.add(\"collapsed\");\n }\n }\n</script>\n\"\"\"\n\nTEMPLATE = \"\"\"\n<html>\n <head>\n <style type='text/css'>\n {styles}\n </style>\n <title>Starlette Debugger</title>\n </head>\n <body>\n <h1>500 Server Error</h1>\n <h2>{error}</h2>\n <div class=\"traceback-container\">\n <p class=\"traceback-title\">Traceback</p>\n <div>{exc_html}</div>\n </div>\n {js}\n </body>\n</html>\n\"\"\"\n\nFRAME_TEMPLATE = \"\"\"\n<div>\n <p class=\"frame-title\">File <span class=\"frame-filename\">{frame_filename}</span>,\n line <i>{frame_lineno}</i>,\n in <b>{frame_name}</b>\n <span class=\"collapse-btn\" data-frame-id=\"{frame_filename}-{frame_lineno}\" onclick=\"collapse(this)\">{collapse_button}</span>\n </p>\n <div id=\"{frame_filename}-{frame_lineno}\" class=\"source-code {collapsed}\">{code_context}</div>\n</div>\n\"\"\" # noqa: E501\n\nLINE = \"\"\"\n<p><span class=\"frame-line\">\n<span class=\"lineno\">{lineno}.</span> {line}</span></p>\n\"\"\"\n\nCENTER_LINE = \"\"\"\n<p class=\"center-line\"><span class=\"frame-line center-line\">\n<span class=\"lineno\">{lineno}.</span> {line}</span></p>\n\"\"\"\n\n\nclass ServerErrorMiddleware:\n \"\"\"\n Handles returning 500 responses when a server error occurs.\n\n If 'debug' is set, then traceback responses will be returned,\n otherwise the designated 'handler' will be called.\n\n This middleware class should generally be used to wrap *everything*\n else up, so that unhandled exceptions anywhere in the stack\n always result in an appropriate 500 response.\n \"\"\"\n\n def __init__(\n self, app: ASGIApp, handler: typing.Callable = None, debug: bool = False\n ) -> None:\n self.app = app\n self.handler = handler\n self.debug = debug\n\n async def __call__(self, scope: Scope, receive: Receive, send: Send) -> None:\n if scope[\"type\"] != \"http\":\n await self.app(scope, receive, send)\n return\n\n response_started = False\n\n async def _send(message: Message) -> None:\n nonlocal response_started, send\n\n if message[\"type\"] == \"http.response.start\":\n response_started = True\n await send(message)\n\n try:\n await self.app(scope, receive, _send)\n except Exception as exc:\n if not response_started:\n request = Request(scope)\n if self.debug:\n # In debug mode, return traceback responses.\n response = self.debug_response(request, exc)\n elif self.handler is None:\n # Use our default 500 error handler.\n response = self.error_response(request, exc)\n else:\n # Use an installed 500 error handler.\n if asyncio.iscoroutinefunction(self.handler):\n response = await self.handler(request, exc)\n else:\n response = await run_in_threadpool(self.handler, request, exc)\n\n await response(scope, receive, send)\n\n # We always continue to raise the exception.\n # This allows servers to log the error, or allows test clients\n # to optionally raise the error within the test case.\n raise exc\n\n def format_line(\n self, index: int, line: str, frame_lineno: int, frame_index: int\n ) -> str:\n values = {\n # HTML escape - line could contain < or >\n \"line\": html.escape(line).replace(\" \", \" \"),\n \"lineno\": (frame_lineno - frame_index) + index,\n }\n\n if index != frame_index:\n return LINE.format(**values)\n return CENTER_LINE.format(**values)\n\n def generate_frame_html(self, frame: inspect.FrameInfo, is_collapsed: bool) -> str:\n code_context = \"\".join(\n self.format_line(index, line, frame.lineno, frame.index) # type: ignore\n for index, line in enumerate(frame.code_context or [])\n )\n\n values = {\n # HTML escape - filename could contain < or >, especially if it's a virtual\n # file e.g. <stdin> in the REPL\n \"frame_filename\": html.escape(frame.filename),\n \"frame_lineno\": frame.lineno,\n # HTML escape - if you try very hard it's possible to name a function with <\n # or >\n \"frame_name\": html.escape(frame.function),\n \"code_context\": code_context,\n \"collapsed\": \"collapsed\" if is_collapsed else \"\",\n \"collapse_button\": \"+\" if is_collapsed else \"‒\",\n }\n return FRAME_TEMPLATE.format(**values)\n\n def generate_html(self, exc: Exception, limit: int = 7) -> str:\n traceback_obj = traceback.TracebackException.from_exception(\n exc, capture_locals=True\n )\n\n exc_html = \"\"\n is_collapsed = False\n exc_traceback = exc.__traceback__\n if exc_traceback is not None:\n frames = inspect.getinnerframes(exc_traceback, limit)\n for frame in reversed(frames):\n exc_html += self.generate_frame_html(frame, is_collapsed)\n is_collapsed = True\n\n # escape error class and text\n error = (\n f\"{html.escape(traceback_obj.exc_type.__name__)}: \"\n f\"{html.escape(str(traceback_obj))}\"\n )\n\n return TEMPLATE.format(styles=STYLES, js=JS, error=error, exc_html=exc_html)\n\n def generate_plain_text(self, exc: Exception) -> str:\n return \"\".join(traceback.format_exception(type(exc), exc, exc.__traceback__))\n\n def debug_response(self, request: Request, exc: Exception) -> Response:\n accept = request.headers.get(\"accept\", \"\")\n\n if \"text/html\" in accept:\n content = self.generate_html(exc)\n return HTMLResponse(content, status_code=500)\n content = self.generate_plain_text(exc)\n return PlainTextResponse(content, status_code=500)\n\n def error_response(self, request: Request, exc: Exception) -> Response:\n return PlainTextResponse(\"Internal Server Error\", status_code=500)\n", "path": "starlette/middleware/errors.py"}]} | 3,111 | 354 |
gh_patches_debug_27994 | rasdani/github-patches | git_diff | pre-commit__pre-commit-1319 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Cannot specify custom Python shebang for hook executable
I am working on a shared Python environment with `python3.6` as executable and I want the shebang to point to the correct executable `#!/usr/bin/env python3.6`. However, even though I specify
```
default_language_version:
python: python3.6
```
or `language_version: python3.6` in `hooks`, it always picks `#!/usr/bin/env python` as the shebang even though there is no `python` executable. Is there a way to specify a custom shebang?
</issue>
<code>
[start of pre_commit/commands/install_uninstall.py]
1 import itertools
2 import logging
3 import os.path
4 import shutil
5 import sys
6 from typing import Optional
7 from typing import Sequence
8 from typing import Tuple
9
10 from pre_commit import git
11 from pre_commit import output
12 from pre_commit.clientlib import load_config
13 from pre_commit.repository import all_hooks
14 from pre_commit.repository import install_hook_envs
15 from pre_commit.store import Store
16 from pre_commit.util import make_executable
17 from pre_commit.util import resource_text
18
19
20 logger = logging.getLogger(__name__)
21
22 # This is used to identify the hook file we install
23 PRIOR_HASHES = (
24 '4d9958c90bc262f47553e2c073f14cfe',
25 'd8ee923c46731b42cd95cc869add4062',
26 '49fd668cb42069aa1b6048464be5d395',
27 '79f09a650522a87b0da915d0d983b2de',
28 'e358c9dae00eac5d06b38dfdb1e33a8c',
29 )
30 CURRENT_HASH = '138fd403232d2ddd5efb44317e38bf03'
31 TEMPLATE_START = '# start templated\n'
32 TEMPLATE_END = '# end templated\n'
33
34
35 def _hook_paths(
36 hook_type: str,
37 git_dir: Optional[str] = None,
38 ) -> Tuple[str, str]:
39 git_dir = git_dir if git_dir is not None else git.get_git_dir()
40 pth = os.path.join(git_dir, 'hooks', hook_type)
41 return pth, f'{pth}.legacy'
42
43
44 def is_our_script(filename: str) -> bool:
45 if not os.path.exists(filename): # pragma: windows no cover (symlink)
46 return False
47 with open(filename) as f:
48 contents = f.read()
49 return any(h in contents for h in (CURRENT_HASH,) + PRIOR_HASHES)
50
51
52 def shebang() -> str:
53 if sys.platform == 'win32':
54 py = 'python'
55 else:
56 # Homebrew/homebrew-core#35825: be more timid about appropriate `PATH`
57 path_choices = [p for p in os.defpath.split(os.pathsep) if p]
58 exe_choices = [
59 f'python{sys.version_info[0]}.{sys.version_info[1]}',
60 f'python{sys.version_info[0]}',
61 ]
62 for path, exe in itertools.product(path_choices, exe_choices):
63 if os.access(os.path.join(path, exe), os.X_OK):
64 py = exe
65 break
66 else:
67 py = 'python'
68 return f'#!/usr/bin/env {py}'
69
70
71 def _install_hook_script(
72 config_file: str,
73 hook_type: str,
74 overwrite: bool = False,
75 skip_on_missing_config: bool = False,
76 git_dir: Optional[str] = None,
77 ) -> None:
78 hook_path, legacy_path = _hook_paths(hook_type, git_dir=git_dir)
79
80 os.makedirs(os.path.dirname(hook_path), exist_ok=True)
81
82 # If we have an existing hook, move it to pre-commit.legacy
83 if os.path.lexists(hook_path) and not is_our_script(hook_path):
84 shutil.move(hook_path, legacy_path)
85
86 # If we specify overwrite, we simply delete the legacy file
87 if overwrite and os.path.exists(legacy_path):
88 os.remove(legacy_path)
89 elif os.path.exists(legacy_path):
90 output.write_line(
91 f'Running in migration mode with existing hooks at {legacy_path}\n'
92 f'Use -f to use only pre-commit.',
93 )
94
95 args = ['hook-impl', f'--config={config_file}', f'--hook-type={hook_type}']
96 if skip_on_missing_config:
97 args.append('--skip-on-missing-config')
98 params = {'INSTALL_PYTHON': sys.executable, 'ARGS': args}
99
100 with open(hook_path, 'w') as hook_file:
101 contents = resource_text('hook-tmpl')
102 before, rest = contents.split(TEMPLATE_START)
103 to_template, after = rest.split(TEMPLATE_END)
104
105 before = before.replace('#!/usr/bin/env python3', shebang())
106
107 hook_file.write(before + TEMPLATE_START)
108 for line in to_template.splitlines():
109 var = line.split()[0]
110 hook_file.write(f'{var} = {params[var]!r}\n')
111 hook_file.write(TEMPLATE_END + after)
112 make_executable(hook_path)
113
114 output.write_line(f'pre-commit installed at {hook_path}')
115
116
117 def install(
118 config_file: str,
119 store: Store,
120 hook_types: Sequence[str],
121 overwrite: bool = False,
122 hooks: bool = False,
123 skip_on_missing_config: bool = False,
124 git_dir: Optional[str] = None,
125 ) -> int:
126 if git_dir is None and git.has_core_hookpaths_set():
127 logger.error(
128 'Cowardly refusing to install hooks with `core.hooksPath` set.\n'
129 'hint: `git config --unset-all core.hooksPath`',
130 )
131 return 1
132
133 for hook_type in hook_types:
134 _install_hook_script(
135 config_file, hook_type,
136 overwrite=overwrite,
137 skip_on_missing_config=skip_on_missing_config,
138 git_dir=git_dir,
139 )
140
141 if hooks:
142 install_hooks(config_file, store)
143
144 return 0
145
146
147 def install_hooks(config_file: str, store: Store) -> int:
148 install_hook_envs(all_hooks(load_config(config_file), store), store)
149 return 0
150
151
152 def _uninstall_hook_script(hook_type: str) -> None:
153 hook_path, legacy_path = _hook_paths(hook_type)
154
155 # If our file doesn't exist or it isn't ours, gtfo.
156 if not os.path.exists(hook_path) or not is_our_script(hook_path):
157 return
158
159 os.remove(hook_path)
160 output.write_line(f'{hook_type} uninstalled')
161
162 if os.path.exists(legacy_path):
163 os.rename(legacy_path, hook_path)
164 output.write_line(f'Restored previous hooks to {hook_path}')
165
166
167 def uninstall(hook_types: Sequence[str]) -> int:
168 for hook_type in hook_types:
169 _uninstall_hook_script(hook_type)
170 return 0
171
[end of pre_commit/commands/install_uninstall.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pre_commit/commands/install_uninstall.py b/pre_commit/commands/install_uninstall.py
--- a/pre_commit/commands/install_uninstall.py
+++ b/pre_commit/commands/install_uninstall.py
@@ -30,6 +30,10 @@
CURRENT_HASH = '138fd403232d2ddd5efb44317e38bf03'
TEMPLATE_START = '# start templated\n'
TEMPLATE_END = '# end templated\n'
+# Homebrew/homebrew-core#35825: be more timid about appropriate `PATH`
+# #1312 os.defpath is too restrictive on BSD
+POSIX_SEARCH_PATH = ('/usr/local/bin', '/usr/bin', '/bin')
+SYS_EXE = os.path.basename(os.path.realpath(sys.executable))
def _hook_paths(
@@ -51,20 +55,21 @@
def shebang() -> str:
if sys.platform == 'win32':
- py = 'python'
+ py = SYS_EXE
else:
- # Homebrew/homebrew-core#35825: be more timid about appropriate `PATH`
- path_choices = [p for p in os.defpath.split(os.pathsep) if p]
exe_choices = [
f'python{sys.version_info[0]}.{sys.version_info[1]}',
f'python{sys.version_info[0]}',
]
- for path, exe in itertools.product(path_choices, exe_choices):
+ # avoid searching for bare `python` as it's likely to be python 2
+ if SYS_EXE != 'python':
+ exe_choices.append(SYS_EXE)
+ for path, exe in itertools.product(POSIX_SEARCH_PATH, exe_choices):
if os.access(os.path.join(path, exe), os.X_OK):
py = exe
break
else:
- py = 'python'
+ py = SYS_EXE
return f'#!/usr/bin/env {py}'
| {"golden_diff": "diff --git a/pre_commit/commands/install_uninstall.py b/pre_commit/commands/install_uninstall.py\n--- a/pre_commit/commands/install_uninstall.py\n+++ b/pre_commit/commands/install_uninstall.py\n@@ -30,6 +30,10 @@\n CURRENT_HASH = '138fd403232d2ddd5efb44317e38bf03'\n TEMPLATE_START = '# start templated\\n'\n TEMPLATE_END = '# end templated\\n'\n+# Homebrew/homebrew-core#35825: be more timid about appropriate `PATH`\n+# #1312 os.defpath is too restrictive on BSD\n+POSIX_SEARCH_PATH = ('/usr/local/bin', '/usr/bin', '/bin')\n+SYS_EXE = os.path.basename(os.path.realpath(sys.executable))\n \n \n def _hook_paths(\n@@ -51,20 +55,21 @@\n \n def shebang() -> str:\n if sys.platform == 'win32':\n- py = 'python'\n+ py = SYS_EXE\n else:\n- # Homebrew/homebrew-core#35825: be more timid about appropriate `PATH`\n- path_choices = [p for p in os.defpath.split(os.pathsep) if p]\n exe_choices = [\n f'python{sys.version_info[0]}.{sys.version_info[1]}',\n f'python{sys.version_info[0]}',\n ]\n- for path, exe in itertools.product(path_choices, exe_choices):\n+ # avoid searching for bare `python` as it's likely to be python 2\n+ if SYS_EXE != 'python':\n+ exe_choices.append(SYS_EXE)\n+ for path, exe in itertools.product(POSIX_SEARCH_PATH, exe_choices):\n if os.access(os.path.join(path, exe), os.X_OK):\n py = exe\n break\n else:\n- py = 'python'\n+ py = SYS_EXE\n return f'#!/usr/bin/env {py}'\n", "issue": "Cannot specify custom Python shebang for hook executable\nI am working on a shared Python environment with `python3.6` as executable and I want the shebang to point to the correct executable `#!/usr/bin/env python3.6`. However, even though I specify \r\n```\r\ndefault_language_version:\r\n python: python3.6\r\n```\r\nor `language_version: python3.6` in `hooks`, it always picks `#!/usr/bin/env python` as the shebang even though there is no `python` executable. Is there a way to specify a custom shebang?\n", "before_files": [{"content": "import itertools\nimport logging\nimport os.path\nimport shutil\nimport sys\nfrom typing import Optional\nfrom typing import Sequence\nfrom typing import Tuple\n\nfrom pre_commit import git\nfrom pre_commit import output\nfrom pre_commit.clientlib import load_config\nfrom pre_commit.repository import all_hooks\nfrom pre_commit.repository import install_hook_envs\nfrom pre_commit.store import Store\nfrom pre_commit.util import make_executable\nfrom pre_commit.util import resource_text\n\n\nlogger = logging.getLogger(__name__)\n\n# This is used to identify the hook file we install\nPRIOR_HASHES = (\n '4d9958c90bc262f47553e2c073f14cfe',\n 'd8ee923c46731b42cd95cc869add4062',\n '49fd668cb42069aa1b6048464be5d395',\n '79f09a650522a87b0da915d0d983b2de',\n 'e358c9dae00eac5d06b38dfdb1e33a8c',\n)\nCURRENT_HASH = '138fd403232d2ddd5efb44317e38bf03'\nTEMPLATE_START = '# start templated\\n'\nTEMPLATE_END = '# end templated\\n'\n\n\ndef _hook_paths(\n hook_type: str,\n git_dir: Optional[str] = None,\n) -> Tuple[str, str]:\n git_dir = git_dir if git_dir is not None else git.get_git_dir()\n pth = os.path.join(git_dir, 'hooks', hook_type)\n return pth, f'{pth}.legacy'\n\n\ndef is_our_script(filename: str) -> bool:\n if not os.path.exists(filename): # pragma: windows no cover (symlink)\n return False\n with open(filename) as f:\n contents = f.read()\n return any(h in contents for h in (CURRENT_HASH,) + PRIOR_HASHES)\n\n\ndef shebang() -> str:\n if sys.platform == 'win32':\n py = 'python'\n else:\n # Homebrew/homebrew-core#35825: be more timid about appropriate `PATH`\n path_choices = [p for p in os.defpath.split(os.pathsep) if p]\n exe_choices = [\n f'python{sys.version_info[0]}.{sys.version_info[1]}',\n f'python{sys.version_info[0]}',\n ]\n for path, exe in itertools.product(path_choices, exe_choices):\n if os.access(os.path.join(path, exe), os.X_OK):\n py = exe\n break\n else:\n py = 'python'\n return f'#!/usr/bin/env {py}'\n\n\ndef _install_hook_script(\n config_file: str,\n hook_type: str,\n overwrite: bool = False,\n skip_on_missing_config: bool = False,\n git_dir: Optional[str] = None,\n) -> None:\n hook_path, legacy_path = _hook_paths(hook_type, git_dir=git_dir)\n\n os.makedirs(os.path.dirname(hook_path), exist_ok=True)\n\n # If we have an existing hook, move it to pre-commit.legacy\n if os.path.lexists(hook_path) and not is_our_script(hook_path):\n shutil.move(hook_path, legacy_path)\n\n # If we specify overwrite, we simply delete the legacy file\n if overwrite and os.path.exists(legacy_path):\n os.remove(legacy_path)\n elif os.path.exists(legacy_path):\n output.write_line(\n f'Running in migration mode with existing hooks at {legacy_path}\\n'\n f'Use -f to use only pre-commit.',\n )\n\n args = ['hook-impl', f'--config={config_file}', f'--hook-type={hook_type}']\n if skip_on_missing_config:\n args.append('--skip-on-missing-config')\n params = {'INSTALL_PYTHON': sys.executable, 'ARGS': args}\n\n with open(hook_path, 'w') as hook_file:\n contents = resource_text('hook-tmpl')\n before, rest = contents.split(TEMPLATE_START)\n to_template, after = rest.split(TEMPLATE_END)\n\n before = before.replace('#!/usr/bin/env python3', shebang())\n\n hook_file.write(before + TEMPLATE_START)\n for line in to_template.splitlines():\n var = line.split()[0]\n hook_file.write(f'{var} = {params[var]!r}\\n')\n hook_file.write(TEMPLATE_END + after)\n make_executable(hook_path)\n\n output.write_line(f'pre-commit installed at {hook_path}')\n\n\ndef install(\n config_file: str,\n store: Store,\n hook_types: Sequence[str],\n overwrite: bool = False,\n hooks: bool = False,\n skip_on_missing_config: bool = False,\n git_dir: Optional[str] = None,\n) -> int:\n if git_dir is None and git.has_core_hookpaths_set():\n logger.error(\n 'Cowardly refusing to install hooks with `core.hooksPath` set.\\n'\n 'hint: `git config --unset-all core.hooksPath`',\n )\n return 1\n\n for hook_type in hook_types:\n _install_hook_script(\n config_file, hook_type,\n overwrite=overwrite,\n skip_on_missing_config=skip_on_missing_config,\n git_dir=git_dir,\n )\n\n if hooks:\n install_hooks(config_file, store)\n\n return 0\n\n\ndef install_hooks(config_file: str, store: Store) -> int:\n install_hook_envs(all_hooks(load_config(config_file), store), store)\n return 0\n\n\ndef _uninstall_hook_script(hook_type: str) -> None:\n hook_path, legacy_path = _hook_paths(hook_type)\n\n # If our file doesn't exist or it isn't ours, gtfo.\n if not os.path.exists(hook_path) or not is_our_script(hook_path):\n return\n\n os.remove(hook_path)\n output.write_line(f'{hook_type} uninstalled')\n\n if os.path.exists(legacy_path):\n os.rename(legacy_path, hook_path)\n output.write_line(f'Restored previous hooks to {hook_path}')\n\n\ndef uninstall(hook_types: Sequence[str]) -> int:\n for hook_type in hook_types:\n _uninstall_hook_script(hook_type)\n return 0\n", "path": "pre_commit/commands/install_uninstall.py"}]} | 2,515 | 439 |
gh_patches_debug_3535 | rasdani/github-patches | git_diff | scikit-image__scikit-image-1206 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
canny edge detection throws AttributeError exception
I was trying out http://scikit-image.org/docs/dev/auto_examples/plot_canny.html
And the following lines of code:
# Generate noisy image of a square
im = np.zeros((128, 128))
im[32:-32, 32:-32] = 1
im = ndimage.rotate(im, 15, mode='constant')
im = ndimage.gaussian_filter(im, 4)
im += 0.2 \* np.random.random(im.shape)
# Compute the Canny filter for two values of sigma
edges1 = filter.canny(im)
produced this:
Traceback (most recent call last):
File "<stdin>", line 2, in <module>
File "/home/abc/virtualenvs/activepython/lib/python2.7/site-packages/scikit_image-0.11dev-py2.7-linux-x86_64.egg/skimage/_shared/utils.py", line 46, in __call__
msg = 'Call to deprecated function `%s`.' % func.**name**
AttributeError: 'numpy.ndarray' object has no attribute '**name**'
Any guess? Seems I'm using the latest version of scikit-image.
</issue>
<code>
[start of skimage/filter/__init__.py]
1 from .lpi_filter import inverse, wiener, LPIFilter2D
2 from ._gaussian import gaussian_filter
3 from .edges import (sobel, hsobel, vsobel, scharr, hscharr, vscharr, prewitt,
4 hprewitt, vprewitt, roberts, roberts_positive_diagonal,
5 roberts_negative_diagonal)
6 from ._rank_order import rank_order
7 from ._gabor import gabor_kernel, gabor_filter
8 from .thresholding import (threshold_adaptive, threshold_otsu, threshold_yen,
9 threshold_isodata)
10 from . import rank
11
12 from skimage._shared.utils import deprecated
13 from skimage import restoration
14 denoise_bilateral = deprecated('skimage.restoration.denoise_bilateral')\
15 (restoration.denoise_bilateral)
16 denoise_tv_bregman = deprecated('skimage.restoration.denoise_tv_bregman')\
17 (restoration.denoise_tv_bregman)
18 denoise_tv_chambolle = deprecated('skimage.restoration.denoise_tv_chambolle')\
19 (restoration.denoise_tv_chambolle)
20
21 # Backward compatibility v<0.11
22 @deprecated
23 def canny(*args, **kwargs):
24 # Hack to avoid circular import
25 from skimage.feature._canny import canny as canny_
26 return canny_(*args, **kwargs)
27
28
29 __all__ = ['inverse',
30 'wiener',
31 'LPIFilter2D',
32 'gaussian_filter',
33 'canny',
34 'sobel',
35 'hsobel',
36 'vsobel',
37 'scharr',
38 'hscharr',
39 'vscharr',
40 'prewitt',
41 'hprewitt',
42 'vprewitt',
43 'roberts',
44 'roberts_positive_diagonal',
45 'roberts_negative_diagonal',
46 'denoise_tv_chambolle',
47 'denoise_bilateral',
48 'denoise_tv_bregman',
49 'rank_order',
50 'gabor_kernel',
51 'gabor_filter',
52 'threshold_adaptive',
53 'threshold_otsu',
54 'threshold_yen',
55 'threshold_isodata',
56 'rank']
57
[end of skimage/filter/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/skimage/filter/__init__.py b/skimage/filter/__init__.py
--- a/skimage/filter/__init__.py
+++ b/skimage/filter/__init__.py
@@ -19,7 +19,7 @@
(restoration.denoise_tv_chambolle)
# Backward compatibility v<0.11
-@deprecated
+@deprecated('skimage.feature.canny')
def canny(*args, **kwargs):
# Hack to avoid circular import
from skimage.feature._canny import canny as canny_
| {"golden_diff": "diff --git a/skimage/filter/__init__.py b/skimage/filter/__init__.py\n--- a/skimage/filter/__init__.py\n+++ b/skimage/filter/__init__.py\n@@ -19,7 +19,7 @@\n (restoration.denoise_tv_chambolle)\n \n # Backward compatibility v<0.11\n-@deprecated\n+@deprecated('skimage.feature.canny')\n def canny(*args, **kwargs):\n # Hack to avoid circular import\n from skimage.feature._canny import canny as canny_\n", "issue": "canny edge detection throws AttributeError exception\nI was trying out http://scikit-image.org/docs/dev/auto_examples/plot_canny.html \n\nAnd the following lines of code:\n# Generate noisy image of a square\n\nim = np.zeros((128, 128))\nim[32:-32, 32:-32] = 1\n\nim = ndimage.rotate(im, 15, mode='constant')\nim = ndimage.gaussian_filter(im, 4)\nim += 0.2 \\* np.random.random(im.shape)\n# Compute the Canny filter for two values of sigma\n\nedges1 = filter.canny(im)\n\n produced this:\n\nTraceback (most recent call last):\n File \"<stdin>\", line 2, in <module>\n File \"/home/abc/virtualenvs/activepython/lib/python2.7/site-packages/scikit_image-0.11dev-py2.7-linux-x86_64.egg/skimage/_shared/utils.py\", line 46, in __call__\n msg = 'Call to deprecated function `%s`.' % func.**name**\nAttributeError: 'numpy.ndarray' object has no attribute '**name**'\n\nAny guess? Seems I'm using the latest version of scikit-image. \n\n", "before_files": [{"content": "from .lpi_filter import inverse, wiener, LPIFilter2D\nfrom ._gaussian import gaussian_filter\nfrom .edges import (sobel, hsobel, vsobel, scharr, hscharr, vscharr, prewitt,\n hprewitt, vprewitt, roberts, roberts_positive_diagonal,\n roberts_negative_diagonal)\nfrom ._rank_order import rank_order\nfrom ._gabor import gabor_kernel, gabor_filter\nfrom .thresholding import (threshold_adaptive, threshold_otsu, threshold_yen,\n threshold_isodata)\nfrom . import rank\n\nfrom skimage._shared.utils import deprecated\nfrom skimage import restoration\ndenoise_bilateral = deprecated('skimage.restoration.denoise_bilateral')\\\n (restoration.denoise_bilateral)\ndenoise_tv_bregman = deprecated('skimage.restoration.denoise_tv_bregman')\\\n (restoration.denoise_tv_bregman)\ndenoise_tv_chambolle = deprecated('skimage.restoration.denoise_tv_chambolle')\\\n (restoration.denoise_tv_chambolle)\n\n# Backward compatibility v<0.11\n@deprecated\ndef canny(*args, **kwargs):\n # Hack to avoid circular import\n from skimage.feature._canny import canny as canny_\n return canny_(*args, **kwargs)\n\n\n__all__ = ['inverse',\n 'wiener',\n 'LPIFilter2D',\n 'gaussian_filter',\n 'canny',\n 'sobel',\n 'hsobel',\n 'vsobel',\n 'scharr',\n 'hscharr',\n 'vscharr',\n 'prewitt',\n 'hprewitt',\n 'vprewitt',\n 'roberts',\n 'roberts_positive_diagonal',\n 'roberts_negative_diagonal',\n 'denoise_tv_chambolle',\n 'denoise_bilateral',\n 'denoise_tv_bregman',\n 'rank_order',\n 'gabor_kernel',\n 'gabor_filter',\n 'threshold_adaptive',\n 'threshold_otsu',\n 'threshold_yen',\n 'threshold_isodata',\n 'rank']\n", "path": "skimage/filter/__init__.py"}]} | 1,390 | 125 |
gh_patches_debug_4015 | rasdani/github-patches | git_diff | rasterio__rasterio-914 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
show_hist() fails with nans
I am getting an `UnboundLocalError: local variable 'ymin' referenced before assignment` when I am trying to use the show_hist() function in the plotting module.
```
import rasterio
from rasterio.plot import show_hist
from rasterio.plot import show
import matplotlib.pyplot as plt
fname = r"C:\workspace\GLCM\output\glcm_rasters\2014_05\10\R02028_10_asm.tif"
src = rasterio.open(fname)
fig, (axrgb, axhist) = plt.subplots(1, 2, figsize=(14,7))
show(src, ax=axrgb)
show_hist(src, bins=50, histtype='bar', lw=0.0, stacked=False, alpha=0.3, ax=axhist)
plt.show()
```
[here](https://drive.google.com/file/d/0B17WT3pXaqrYcUVQbXRVYkxqeXc/view?usp=sharing) is the offending file.
conda info:
```
platform : win-64
conda version : 4.1.11
conda-env version : 2.5.2
conda-build version : 1.20.0
python version : 2.7.11.final.0
requests version : 2.9.1
root environment : c:\Anaconda2 (writable)
default environment : c:\Anaconda2
envs directories : c:\Anaconda2\envs
package cache : c:\Anaconda2\pkgs
channel URLs : https://repo.continuum.io/pkgs/free/win-64/
https://repo.continuum.io/pkgs/free/noarch/
https://repo.continuum.io/pkgs/pro/win-64/
https://repo.continuum.io/pkgs/pro/noarch/
https://repo.continuum.io/pkgs/msys2/win-64/
https://repo.continuum.io/pkgs/msys2/noarch/
config file : None
offline mode : False
is foreign system : False
```
Package info:
```
rasterio 0.36.0 <pip>
matplotlib 1.5.1 np110py27_0
```
</issue>
<code>
[start of rasterio/plot.py]
1 """Implementations of various common operations.
2
3 Including `show()` for displaying an array or with matplotlib.
4 Most can handle a numpy array or `rasterio.Band()`.
5 Primarily supports `$ rio insp`.
6 """
7
8 from __future__ import absolute_import
9
10 import logging
11 import warnings
12
13 import numpy as np
14
15 import rasterio
16 from rasterio.io import DatasetReader
17 from rasterio.transform import guard_transform
18 from rasterio.compat import zip_longest
19
20 logger = logging.getLogger(__name__)
21
22
23 def get_plt():
24 """import matplotlib.pyplot
25 raise import error if matplotlib is not installed
26 """
27 try:
28 import matplotlib.pyplot as plt
29 return plt
30 except (ImportError, RuntimeError): # pragma: no cover
31 msg = "Could not import matplotlib\n"
32 msg += "matplotlib required for plotting functions"
33 raise ImportError(msg)
34
35
36 def show(source, with_bounds=True, contour=False, contour_label_kws=None,
37 ax=None, title=None, transform=None, **kwargs):
38 """Display a raster or raster band using matplotlib.
39
40 Parameters
41 ----------
42 source : array-like in raster axis order,
43 or (raster dataset, bidx) tuple,
44 or raster dataset,
45 If the tuple (raster dataset, bidx),
46 selects band `bidx` from raster. If raster dataset display the rgb image
47 as defined in the colorinterp metadata, or default to first band.
48 with_bounds : bool (opt)
49 Whether to change the image extent to the spatial bounds of the image,
50 rather than pixel coordinates. Only works when source is
51 (raster dataset, bidx) or raster dataset.
52 contour : bool (opt)
53 Whether to plot the raster data as contours
54 contour_label_kws : dictionary (opt)
55 Keyword arguments for labeling the contours,
56 empty dictionary for no labels.
57 ax : matplotlib axis (opt)
58 Axis to plot on, otherwise uses current axis.
59 title : str, optional
60 Title for the figure.
61 transform : Affine, optional
62 Defines the affine transform if source is an array
63 **kwargs : key, value pairings optional
64 These will be passed to the matplotlib imshow or contour method
65 depending on contour argument.
66 See full lists at:
67 http://matplotlib.org/api/axes_api.html?highlight=imshow#matplotlib.axes.Axes.imshow
68 or
69 http://matplotlib.org/api/axes_api.html?highlight=imshow#matplotlib.axes.Axes.contour
70
71 Returns
72 -------
73 ax : matplotlib Axes
74 Axes with plot.
75 """
76 plt = get_plt()
77
78 if isinstance(source, tuple):
79 arr = source[0].read(source[1])
80 if with_bounds:
81 kwargs['extent'] = plotting_extent(source[0])
82 elif isinstance(source, DatasetReader):
83 if source.count == 1:
84 arr = source.read(1, masked=True)
85 else:
86 try:
87 source_colorinterp = {source.colorinterp(n): n for n in source.indexes}
88 colorinterp = rasterio.enums.ColorInterp
89 rgb_indexes = [source_colorinterp[ci] for ci in
90 (colorinterp.red, colorinterp.green, colorinterp.blue)]
91 arr = source.read(rgb_indexes, masked=True)
92 arr = reshape_as_image(arr)
93
94 if with_bounds:
95 kwargs['extent'] = plotting_extent(source)
96 except KeyError:
97 arr = source.read(1, masked=True)
98 else:
99 # The source is a numpy array reshape it to image if it has 3+ bands
100 source = np.ma.squeeze(source)
101 if len(source.shape) >= 3:
102 arr = reshape_as_image(source)
103 else:
104 arr = source
105 if transform and with_bounds:
106 kwargs['extent'] = plotting_extent(arr, transform)
107
108 show = False
109 if not ax:
110 show = True
111 ax = plt.gca()
112
113 if contour:
114 if 'cmap' not in kwargs:
115 kwargs['colors'] = kwargs.get('colors', 'red')
116 kwargs['linewidths'] = kwargs.get('linewidths', 1.5)
117 kwargs['alpha'] = kwargs.get('alpha', 0.8)
118
119 C = ax.contour(arr, origin='upper', **kwargs)
120 if contour_label_kws is None:
121 # no explicit label kws passed use defaults
122 contour_label_kws = dict(fontsize=8,
123 inline=True)
124 if contour_label_kws:
125 ax.clabel(C, **contour_label_kws)
126 else:
127 ax.imshow(arr, **kwargs)
128 if title:
129 ax.set_title(title, fontweight='bold')
130
131 if show:
132 plt.show()
133
134 return ax
135
136
137 def plotting_extent(source, transform=None):
138 """Returns an extent in the format needed
139 for matplotlib's imshow (left, right, bottom, top)
140 instead of rasterio's bounds (left, bottom, top, right)
141
142 Parameters
143 ----------
144 source : raster dataset or array in image order (see reshape_as_image)
145 transform: Affine, required if source is array
146 """
147 if hasattr(source, 'bounds'):
148 extent = (source.bounds.left, source.bounds.right,
149 source.bounds.bottom, source.bounds.top)
150 elif not transform:
151 raise ValueError(
152 "transform is required if source is an array")
153 else:
154 transform = guard_transform(transform)
155 rows, cols = source.shape[0:2]
156 left, top = transform * (0, 0)
157 right, bottom = transform * (cols, rows)
158 extent = (left, right, bottom, top)
159
160 return extent
161
162
163 def reshape_as_image(arr):
164 """Returns the source array reshaped into the order
165 expected by image processing and visualization software
166 (matplotlib, scikit-image, etc)
167 by swapping the axes order from (bands, rows, columns)
168 to (rows, columns, bands)
169
170 Parameters
171 ----------
172 source : array-like in a of format (bands, rows, columns)
173 """
174 # swap the axes order from (bands, rows, columns) to (rows, columns, bands)
175 im = np.ma.transpose(arr, [1,2,0])
176 return im
177
178
179
180 def reshape_as_raster(arr):
181 """Returns the array in a raster order
182 by swapping the axes order from (rows, columns, bands)
183 to (bands, rows, columns)
184
185 Parameters
186 ----------
187 arr : array-like in the image form of (rows, columns, bands)
188 """
189 # swap the axes order from (rows, columns, bands) to (bands, rows, columns)
190 im = np.transpose(arr, [2,0,1])
191 return im
192
193
194 def show_hist(source, bins=10, masked=True, title='Histogram', ax=None, **kwargs):
195 """Easily display a histogram with matplotlib.
196
197 Parameters
198 ----------
199 source : np.array or DatasetReader, rasterio.Band or tuple(dataset, bidx)
200 Input data to display. The first three arrays in multi-dimensional
201 arrays are plotted as red, green, and blue.
202 bins : int, optional
203 Compute histogram across N bins.
204 masked : bool, optional
205 When working with a `rasterio.Band()` object, specifies if the data
206 should be masked on read.
207 title : str, optional
208 Title for the figure.
209 ax : matplotlib axes (opt)
210 The raster will be added to this axes if passed.
211 **kwargs : optional keyword arguments
212 These will be passed to the matplotlib hist method. See full list at:
213 http://matplotlib.org/api/axes_api.html?highlight=imshow#matplotlib.axes.Axes.hist
214 """
215 plt = get_plt()
216
217 if isinstance(source, DatasetReader):
218 arr = source.read(masked=masked)
219 elif isinstance(source, (tuple, rasterio.Band)):
220 arr = source[0].read(source[1], masked=masked)
221 else:
222 arr = source
223
224 # The histogram is computed individually for each 'band' in the array
225 # so we need the overall min/max to constrain the plot
226 rng = arr.min(), arr.max()
227
228 if len(arr.shape) is 2:
229 arr = np.expand_dims(arr.flatten(), 0).T
230 colors = ['gold']
231 else:
232 arr = arr.reshape(arr.shape[0], -1).T
233 colors = ['red', 'green', 'blue', 'violet', 'gold', 'saddlebrown']
234
235 # The goal is to provide a curated set of colors for working with
236 # smaller datasets and let matplotlib define additional colors when
237 # working with larger datasets.
238 if arr.shape[-1] > len(colors):
239 n = arr.shape[-1] - len(colors)
240 colors.extend(np.ndarray.tolist(plt.get_cmap('Accent')(np.linspace(0, 1, n))))
241 else:
242 colors = colors[:arr.shape[-1]]
243
244 # If a rasterio.Band() is given make sure the proper index is displayed
245 # in the legend.
246 if isinstance(source, (tuple, rasterio.Band)):
247 labels = [str(source[1])]
248 else:
249 labels = (str(i + 1) for i in range(len(arr)))
250
251 if ax:
252 show = False
253 else:
254 show = True
255 ax = plt.gca()
256
257 fig = ax.get_figure()
258
259 ax.hist(arr,
260 bins=bins,
261 color=colors,
262 label=labels,
263 range=rng,
264 **kwargs)
265
266 ax.legend(loc="upper right")
267 ax.set_title(title, fontweight='bold')
268 ax.grid(True)
269 ax.set_xlabel('DN')
270 ax.set_ylabel('Frequency')
271 if show:
272 plt.show()
273
[end of rasterio/plot.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/rasterio/plot.py b/rasterio/plot.py
--- a/rasterio/plot.py
+++ b/rasterio/plot.py
@@ -223,7 +223,7 @@
# The histogram is computed individually for each 'band' in the array
# so we need the overall min/max to constrain the plot
- rng = arr.min(), arr.max()
+ rng = np.nanmin(arr), np.nanmax(arr)
if len(arr.shape) is 2:
arr = np.expand_dims(arr.flatten(), 0).T
| {"golden_diff": "diff --git a/rasterio/plot.py b/rasterio/plot.py\n--- a/rasterio/plot.py\n+++ b/rasterio/plot.py\n@@ -223,7 +223,7 @@\n \n # The histogram is computed individually for each 'band' in the array\n # so we need the overall min/max to constrain the plot\n- rng = arr.min(), arr.max()\n+ rng = np.nanmin(arr), np.nanmax(arr)\n \n if len(arr.shape) is 2:\n arr = np.expand_dims(arr.flatten(), 0).T\n", "issue": "show_hist() fails with nans\nI am getting an `UnboundLocalError: local variable 'ymin' referenced before assignment` when I am trying to use the show_hist() function in the plotting module. \n\n```\nimport rasterio\nfrom rasterio.plot import show_hist\nfrom rasterio.plot import show\nimport matplotlib.pyplot as plt\n\nfname = r\"C:\\workspace\\GLCM\\output\\glcm_rasters\\2014_05\\10\\R02028_10_asm.tif\"\nsrc = rasterio.open(fname)\n\nfig, (axrgb, axhist) = plt.subplots(1, 2, figsize=(14,7))\nshow(src, ax=axrgb)\nshow_hist(src, bins=50, histtype='bar', lw=0.0, stacked=False, alpha=0.3, ax=axhist)\n plt.show()\n```\n\n[here](https://drive.google.com/file/d/0B17WT3pXaqrYcUVQbXRVYkxqeXc/view?usp=sharing) is the offending file.\n\nconda info:\n\n```\n platform : win-64\n conda version : 4.1.11\n conda-env version : 2.5.2\n conda-build version : 1.20.0\n python version : 2.7.11.final.0\n requests version : 2.9.1\n root environment : c:\\Anaconda2 (writable)\n default environment : c:\\Anaconda2\n envs directories : c:\\Anaconda2\\envs\n package cache : c:\\Anaconda2\\pkgs\n channel URLs : https://repo.continuum.io/pkgs/free/win-64/\n https://repo.continuum.io/pkgs/free/noarch/\n https://repo.continuum.io/pkgs/pro/win-64/\n https://repo.continuum.io/pkgs/pro/noarch/\n https://repo.continuum.io/pkgs/msys2/win-64/\n https://repo.continuum.io/pkgs/msys2/noarch/\n config file : None\n offline mode : False\n is foreign system : False\n```\n\nPackage info:\n\n```\nrasterio 0.36.0 <pip>\nmatplotlib 1.5.1 np110py27_0\n```\n\n", "before_files": [{"content": "\"\"\"Implementations of various common operations.\n\nIncluding `show()` for displaying an array or with matplotlib.\nMost can handle a numpy array or `rasterio.Band()`.\nPrimarily supports `$ rio insp`.\n\"\"\"\n\nfrom __future__ import absolute_import\n\nimport logging\nimport warnings\n\nimport numpy as np\n\nimport rasterio\nfrom rasterio.io import DatasetReader\nfrom rasterio.transform import guard_transform\nfrom rasterio.compat import zip_longest\n\nlogger = logging.getLogger(__name__)\n\n\ndef get_plt():\n \"\"\"import matplotlib.pyplot\n raise import error if matplotlib is not installed\n \"\"\"\n try:\n import matplotlib.pyplot as plt\n return plt\n except (ImportError, RuntimeError): # pragma: no cover\n msg = \"Could not import matplotlib\\n\"\n msg += \"matplotlib required for plotting functions\"\n raise ImportError(msg)\n\n\ndef show(source, with_bounds=True, contour=False, contour_label_kws=None,\n ax=None, title=None, transform=None, **kwargs):\n \"\"\"Display a raster or raster band using matplotlib.\n\n Parameters\n ----------\n source : array-like in raster axis order,\n or (raster dataset, bidx) tuple,\n or raster dataset,\n If the tuple (raster dataset, bidx),\n selects band `bidx` from raster. If raster dataset display the rgb image\n as defined in the colorinterp metadata, or default to first band.\n with_bounds : bool (opt)\n Whether to change the image extent to the spatial bounds of the image,\n rather than pixel coordinates. Only works when source is\n (raster dataset, bidx) or raster dataset.\n contour : bool (opt)\n Whether to plot the raster data as contours\n contour_label_kws : dictionary (opt)\n Keyword arguments for labeling the contours,\n empty dictionary for no labels.\n ax : matplotlib axis (opt)\n Axis to plot on, otherwise uses current axis.\n title : str, optional\n Title for the figure.\n transform : Affine, optional\n Defines the affine transform if source is an array\n **kwargs : key, value pairings optional\n These will be passed to the matplotlib imshow or contour method\n depending on contour argument.\n See full lists at:\n http://matplotlib.org/api/axes_api.html?highlight=imshow#matplotlib.axes.Axes.imshow\n or\n http://matplotlib.org/api/axes_api.html?highlight=imshow#matplotlib.axes.Axes.contour\n\n Returns\n -------\n ax : matplotlib Axes\n Axes with plot.\n \"\"\"\n plt = get_plt()\n\n if isinstance(source, tuple):\n arr = source[0].read(source[1])\n if with_bounds:\n kwargs['extent'] = plotting_extent(source[0])\n elif isinstance(source, DatasetReader):\n if source.count == 1:\n arr = source.read(1, masked=True)\n else:\n try:\n source_colorinterp = {source.colorinterp(n): n for n in source.indexes}\n colorinterp = rasterio.enums.ColorInterp\n rgb_indexes = [source_colorinterp[ci] for ci in\n (colorinterp.red, colorinterp.green, colorinterp.blue)]\n arr = source.read(rgb_indexes, masked=True)\n arr = reshape_as_image(arr)\n\n if with_bounds:\n kwargs['extent'] = plotting_extent(source)\n except KeyError:\n arr = source.read(1, masked=True)\n else:\n # The source is a numpy array reshape it to image if it has 3+ bands\n source = np.ma.squeeze(source)\n if len(source.shape) >= 3:\n arr = reshape_as_image(source)\n else:\n arr = source\n if transform and with_bounds:\n kwargs['extent'] = plotting_extent(arr, transform)\n\n show = False\n if not ax:\n show = True\n ax = plt.gca()\n\n if contour:\n if 'cmap' not in kwargs:\n kwargs['colors'] = kwargs.get('colors', 'red')\n kwargs['linewidths'] = kwargs.get('linewidths', 1.5)\n kwargs['alpha'] = kwargs.get('alpha', 0.8)\n\n C = ax.contour(arr, origin='upper', **kwargs)\n if contour_label_kws is None:\n # no explicit label kws passed use defaults\n contour_label_kws = dict(fontsize=8,\n inline=True)\n if contour_label_kws:\n ax.clabel(C, **contour_label_kws)\n else:\n ax.imshow(arr, **kwargs)\n if title:\n ax.set_title(title, fontweight='bold')\n\n if show:\n plt.show()\n\n return ax\n\n\ndef plotting_extent(source, transform=None):\n \"\"\"Returns an extent in the format needed\n for matplotlib's imshow (left, right, bottom, top)\n instead of rasterio's bounds (left, bottom, top, right)\n\n Parameters\n ----------\n source : raster dataset or array in image order (see reshape_as_image)\n transform: Affine, required if source is array\n \"\"\"\n if hasattr(source, 'bounds'):\n extent = (source.bounds.left, source.bounds.right,\n source.bounds.bottom, source.bounds.top)\n elif not transform:\n raise ValueError(\n \"transform is required if source is an array\")\n else:\n transform = guard_transform(transform)\n rows, cols = source.shape[0:2]\n left, top = transform * (0, 0)\n right, bottom = transform * (cols, rows)\n extent = (left, right, bottom, top)\n\n return extent\n\n\ndef reshape_as_image(arr):\n \"\"\"Returns the source array reshaped into the order\n expected by image processing and visualization software\n (matplotlib, scikit-image, etc)\n by swapping the axes order from (bands, rows, columns)\n to (rows, columns, bands)\n\n Parameters\n ----------\n source : array-like in a of format (bands, rows, columns)\n \"\"\"\n # swap the axes order from (bands, rows, columns) to (rows, columns, bands)\n im = np.ma.transpose(arr, [1,2,0])\n return im\n\n\n\ndef reshape_as_raster(arr):\n \"\"\"Returns the array in a raster order\n by swapping the axes order from (rows, columns, bands)\n to (bands, rows, columns)\n\n Parameters\n ----------\n arr : array-like in the image form of (rows, columns, bands)\n \"\"\"\n # swap the axes order from (rows, columns, bands) to (bands, rows, columns)\n im = np.transpose(arr, [2,0,1])\n return im\n\n\ndef show_hist(source, bins=10, masked=True, title='Histogram', ax=None, **kwargs):\n \"\"\"Easily display a histogram with matplotlib.\n\n Parameters\n ----------\n source : np.array or DatasetReader, rasterio.Band or tuple(dataset, bidx)\n Input data to display. The first three arrays in multi-dimensional\n arrays are plotted as red, green, and blue.\n bins : int, optional\n Compute histogram across N bins.\n masked : bool, optional\n When working with a `rasterio.Band()` object, specifies if the data\n should be masked on read.\n title : str, optional\n Title for the figure.\n ax : matplotlib axes (opt)\n The raster will be added to this axes if passed.\n **kwargs : optional keyword arguments\n These will be passed to the matplotlib hist method. See full list at:\n http://matplotlib.org/api/axes_api.html?highlight=imshow#matplotlib.axes.Axes.hist\n \"\"\"\n plt = get_plt()\n\n if isinstance(source, DatasetReader):\n arr = source.read(masked=masked)\n elif isinstance(source, (tuple, rasterio.Band)):\n arr = source[0].read(source[1], masked=masked)\n else:\n arr = source\n\n # The histogram is computed individually for each 'band' in the array\n # so we need the overall min/max to constrain the plot\n rng = arr.min(), arr.max()\n\n if len(arr.shape) is 2:\n arr = np.expand_dims(arr.flatten(), 0).T\n colors = ['gold']\n else:\n arr = arr.reshape(arr.shape[0], -1).T\n colors = ['red', 'green', 'blue', 'violet', 'gold', 'saddlebrown']\n\n # The goal is to provide a curated set of colors for working with\n # smaller datasets and let matplotlib define additional colors when\n # working with larger datasets.\n if arr.shape[-1] > len(colors):\n n = arr.shape[-1] - len(colors)\n colors.extend(np.ndarray.tolist(plt.get_cmap('Accent')(np.linspace(0, 1, n))))\n else:\n colors = colors[:arr.shape[-1]]\n\n # If a rasterio.Band() is given make sure the proper index is displayed\n # in the legend.\n if isinstance(source, (tuple, rasterio.Band)):\n labels = [str(source[1])]\n else:\n labels = (str(i + 1) for i in range(len(arr)))\n\n if ax:\n show = False\n else:\n show = True\n ax = plt.gca()\n\n fig = ax.get_figure()\n\n ax.hist(arr,\n bins=bins,\n color=colors,\n label=labels,\n range=rng,\n **kwargs)\n\n ax.legend(loc=\"upper right\")\n ax.set_title(title, fontweight='bold')\n ax.grid(True)\n ax.set_xlabel('DN')\n ax.set_ylabel('Frequency')\n if show:\n plt.show()\n", "path": "rasterio/plot.py"}]} | 3,879 | 130 |
gh_patches_debug_6217 | rasdani/github-patches | git_diff | apache__airflow-39345 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
webserver static file caching is disabled above 2.3.0 version.
### Apache Airflow version
Other Airflow 2 version (please specify below)
### If "Other Airflow 2 version" selected, which one?
2.3.x ~ 2.9.x
### What happened?
Recently, I migrated airflow version 2.2.0 to 2.9.0 and python 3.8 to 3.12.
and i experienced too much load time in airflow web dashboard.
in airflow 2.2.0, airflow dashboard loaded almost instantly. but in 2.9.0, it tooks almost 10 seconds.
## Airflow 2.2.0
<img width="960" alt="image" src="https://github.com/apache/airflow/assets/37045096/1d648049-424c-44a1-a505-24fe213f43a7">
## Airflow 2.9.0
<img width="960" alt="image" src="https://github.com/apache/airflow/assets/37045096/ecb58aca-93e9-483f-8e14-d0dc3ce3df6f">
### What you think should happen instead?
I think there is no reason to make slow page loading time because of not using static file caching.
And I figured out the root cause. the problem is airflow webserver's caching is disabled because of bumping up Flask version 1.x to 2.x.
In Flask, there is Configuration Option for static file's Expire time for cache-control.
it is `SEND_FILE_MAX_AGE_DEFAULT`.
In Flask 1.1.x, the default value of `SEND_FILE_MAX_AGE_DEFAULT` is 12 hours.
https://flask.palletsprojects.com/en/1.1.x/api/#flask.Flask.send_file_max_age_default
After Flask 2.0.x, the default value of `SEND_FILE_MAX_AGE_DEFAULT` is changed to None.
https://flask.palletsprojects.com/en/2.0.x/api/#flask.Flask.send_file_max_age_default
after Airflow 2.3.0, Flask version is upgraded to 2.0.x.
When i added flask configuration in app.py
static file caching works well.
example is here. https://github.com/VertexToEdge/airflow-docker-compose
### How to reproduce
I followed setup instruction in https://airflow.apache.org/docs/apache-airflow/stable/howto/docker-compose/index.html
1. Setup Airflow 2.9.0 with docker-compose
``` bash
curl -LfO 'https://airflow.apache.org/docs/apache-airflow/2.9.0/docker-compose.yaml'
AIRFLOW_UID=$(id -u) docker compose up
```
2. access airflow webserver with webbrowser. and refresh the page.
### Operating System
Ubuntu 22.04.3 LTS
### Versions of Apache Airflow Providers
_No response_
### Deployment
Docker-Compose
### Deployment details
_No response_
### Anything else?
I am newbie in Airflow.
I read airflow installation guide and configruation reference. but I'm not sure if there is a better way to do this without changing the code.
Is there any way to configure static file caching? please just talk to me.
thanks for reading. have a good day.
### Are you willing to submit PR?
- [X] Yes I am willing to submit a PR!
### Code of Conduct
- [X] I agree to follow this project's [Code of Conduct](https://github.com/apache/airflow/blob/main/CODE_OF_CONDUCT.md)
</issue>
<code>
[start of airflow/www/app.py]
1 #
2 # Licensed to the Apache Software Foundation (ASF) under one
3 # or more contributor license agreements. See the NOTICE file
4 # distributed with this work for additional information
5 # regarding copyright ownership. The ASF licenses this file
6 # to you under the Apache License, Version 2.0 (the
7 # "License"); you may not use this file except in compliance
8 # with the License. You may obtain a copy of the License at
9 #
10 # http://www.apache.org/licenses/LICENSE-2.0
11 #
12 # Unless required by applicable law or agreed to in writing,
13 # software distributed under the License is distributed on an
14 # "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
15 # KIND, either express or implied. See the License for the
16 # specific language governing permissions and limitations
17 # under the License.
18 from __future__ import annotations
19
20 import warnings
21 from datetime import timedelta
22
23 from flask import Flask
24 from flask_appbuilder import SQLA
25 from flask_wtf.csrf import CSRFProtect
26 from markupsafe import Markup
27 from sqlalchemy.engine.url import make_url
28
29 from airflow import settings
30 from airflow.api_internal.internal_api_call import InternalApiConfig
31 from airflow.configuration import conf
32 from airflow.exceptions import AirflowConfigException, RemovedInAirflow3Warning
33 from airflow.logging_config import configure_logging
34 from airflow.models import import_all_models
35 from airflow.settings import _ENABLE_AIP_44
36 from airflow.utils.json import AirflowJsonProvider
37 from airflow.www.extensions.init_appbuilder import init_appbuilder
38 from airflow.www.extensions.init_appbuilder_links import init_appbuilder_links
39 from airflow.www.extensions.init_auth_manager import get_auth_manager
40 from airflow.www.extensions.init_cache import init_cache
41 from airflow.www.extensions.init_dagbag import init_dagbag
42 from airflow.www.extensions.init_jinja_globals import init_jinja_globals
43 from airflow.www.extensions.init_manifest_files import configure_manifest_files
44 from airflow.www.extensions.init_robots import init_robots
45 from airflow.www.extensions.init_security import (
46 init_api_experimental_auth,
47 init_check_user_active,
48 init_xframe_protection,
49 )
50 from airflow.www.extensions.init_session import init_airflow_session_interface
51 from airflow.www.extensions.init_views import (
52 init_api_auth_provider,
53 init_api_connexion,
54 init_api_error_handlers,
55 init_api_experimental,
56 init_api_internal,
57 init_appbuilder_views,
58 init_error_handlers,
59 init_flash_views,
60 init_plugins,
61 )
62 from airflow.www.extensions.init_wsgi_middlewares import init_wsgi_middleware
63
64 app: Flask | None = None
65
66 # Initializes at the module level, so plugins can access it.
67 # See: /docs/plugins.rst
68 csrf = CSRFProtect()
69
70
71 def create_app(config=None, testing=False):
72 """Create a new instance of Airflow WWW app."""
73 flask_app = Flask(__name__)
74 flask_app.secret_key = conf.get("webserver", "SECRET_KEY")
75
76 flask_app.config["PERMANENT_SESSION_LIFETIME"] = timedelta(minutes=settings.get_session_lifetime_config())
77
78 flask_app.config["MAX_CONTENT_LENGTH"] = conf.getfloat("webserver", "allowed_payload_size") * 1024 * 1024
79
80 webserver_config = conf.get_mandatory_value("webserver", "config_file")
81 # Enable customizations in webserver_config.py to be applied via Flask.current_app.
82 with flask_app.app_context():
83 flask_app.config.from_pyfile(webserver_config, silent=True)
84
85 flask_app.config["TESTING"] = testing
86 flask_app.config["SQLALCHEMY_DATABASE_URI"] = conf.get("database", "SQL_ALCHEMY_CONN")
87
88 instance_name = conf.get(section="webserver", key="instance_name", fallback="Airflow")
89 require_confirmation_dag_change = conf.getboolean(
90 section="webserver", key="require_confirmation_dag_change", fallback=False
91 )
92 instance_name_has_markup = conf.getboolean(
93 section="webserver", key="instance_name_has_markup", fallback=False
94 )
95 if instance_name_has_markup:
96 instance_name = Markup(instance_name).striptags()
97
98 flask_app.config["APP_NAME"] = instance_name
99 flask_app.config["REQUIRE_CONFIRMATION_DAG_CHANGE"] = require_confirmation_dag_change
100
101 url = make_url(flask_app.config["SQLALCHEMY_DATABASE_URI"])
102 if url.drivername == "sqlite" and url.database and not url.database.startswith("/"):
103 raise AirflowConfigException(
104 f'Cannot use relative path: `{conf.get("database", "SQL_ALCHEMY_CONN")}` to connect to sqlite. '
105 "Please use absolute path such as `sqlite:////tmp/airflow.db`."
106 )
107
108 flask_app.config["SQLALCHEMY_TRACK_MODIFICATIONS"] = False
109
110 flask_app.config["SESSION_COOKIE_HTTPONLY"] = True
111 flask_app.config["SESSION_COOKIE_SECURE"] = conf.getboolean("webserver", "COOKIE_SECURE")
112
113 cookie_samesite_config = conf.get("webserver", "COOKIE_SAMESITE")
114 if cookie_samesite_config == "":
115 warnings.warn(
116 "Old deprecated value found for `cookie_samesite` option in `[webserver]` section. "
117 "Using `Lax` instead. Change the value to `Lax` in airflow.cfg to remove this warning.",
118 RemovedInAirflow3Warning,
119 stacklevel=2,
120 )
121 cookie_samesite_config = "Lax"
122 flask_app.config["SESSION_COOKIE_SAMESITE"] = cookie_samesite_config
123
124 if config:
125 flask_app.config.from_mapping(config)
126
127 if "SQLALCHEMY_ENGINE_OPTIONS" not in flask_app.config:
128 flask_app.config["SQLALCHEMY_ENGINE_OPTIONS"] = settings.prepare_engine_args()
129
130 # Configure the JSON encoder used by `|tojson` filter from Flask
131 flask_app.json_provider_class = AirflowJsonProvider
132 flask_app.json = AirflowJsonProvider(flask_app)
133
134 InternalApiConfig.force_database_direct_access()
135
136 csrf.init_app(flask_app)
137
138 init_wsgi_middleware(flask_app)
139
140 db = SQLA()
141 db.session = settings.Session
142 db.init_app(flask_app)
143
144 init_dagbag(flask_app)
145
146 init_api_experimental_auth(flask_app)
147
148 init_robots(flask_app)
149
150 init_cache(flask_app)
151
152 init_flash_views(flask_app)
153
154 configure_logging()
155 configure_manifest_files(flask_app)
156
157 import_all_models()
158
159 with flask_app.app_context():
160 init_appbuilder(flask_app)
161
162 init_appbuilder_views(flask_app)
163 init_appbuilder_links(flask_app)
164 init_plugins(flask_app)
165 init_error_handlers(flask_app)
166 init_api_connexion(flask_app)
167 if conf.getboolean("webserver", "run_internal_api", fallback=False):
168 if not _ENABLE_AIP_44:
169 raise RuntimeError("The AIP_44 is not enabled so you cannot use it.")
170 init_api_internal(flask_app)
171 init_api_experimental(flask_app)
172 init_api_auth_provider(flask_app)
173 init_api_error_handlers(flask_app) # needs to be after all api inits to let them add their path first
174
175 get_auth_manager().init()
176
177 init_jinja_globals(flask_app)
178 init_xframe_protection(flask_app)
179 init_airflow_session_interface(flask_app)
180 init_check_user_active(flask_app)
181 return flask_app
182
183
184 def cached_app(config=None, testing=False):
185 """Return cached instance of Airflow WWW app."""
186 global app
187 if not app:
188 app = create_app(config=config, testing=testing)
189 return app
190
191
192 def purge_cached_app():
193 """Remove the cached version of the app in global state."""
194 global app
195 app = None
196
[end of airflow/www/app.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/airflow/www/app.py b/airflow/www/app.py
--- a/airflow/www/app.py
+++ b/airflow/www/app.py
@@ -121,6 +121,10 @@
cookie_samesite_config = "Lax"
flask_app.config["SESSION_COOKIE_SAMESITE"] = cookie_samesite_config
+ # Above Flask 2.0.x, default value of SEND_FILE_MAX_AGE_DEFAULT changed 12 hours to None.
+ # for static file caching, it needs to set value explicitly.
+ flask_app.config["SEND_FILE_MAX_AGE_DEFAULT"] = timedelta(seconds=43200)
+
if config:
flask_app.config.from_mapping(config)
| {"golden_diff": "diff --git a/airflow/www/app.py b/airflow/www/app.py\n--- a/airflow/www/app.py\n+++ b/airflow/www/app.py\n@@ -121,6 +121,10 @@\n cookie_samesite_config = \"Lax\"\n flask_app.config[\"SESSION_COOKIE_SAMESITE\"] = cookie_samesite_config\n \n+ # Above Flask 2.0.x, default value of SEND_FILE_MAX_AGE_DEFAULT changed 12 hours to None.\n+ # for static file caching, it needs to set value explicitly.\n+ flask_app.config[\"SEND_FILE_MAX_AGE_DEFAULT\"] = timedelta(seconds=43200)\n+\n if config:\n flask_app.config.from_mapping(config)\n", "issue": "webserver static file caching is disabled above 2.3.0 version.\n### Apache Airflow version\n\nOther Airflow 2 version (please specify below)\n\n### If \"Other Airflow 2 version\" selected, which one?\n\n2.3.x ~ 2.9.x\n\n### What happened?\n\nRecently, I migrated airflow version 2.2.0 to 2.9.0 and python 3.8 to 3.12.\r\n\r\nand i experienced too much load time in airflow web dashboard.\r\nin airflow 2.2.0, airflow dashboard loaded almost instantly. but in 2.9.0, it tooks almost 10 seconds.\r\n\r\n## Airflow 2.2.0\r\n<img width=\"960\" alt=\"image\" src=\"https://github.com/apache/airflow/assets/37045096/1d648049-424c-44a1-a505-24fe213f43a7\">\r\n\r\n## Airflow 2.9.0\r\n<img width=\"960\" alt=\"image\" src=\"https://github.com/apache/airflow/assets/37045096/ecb58aca-93e9-483f-8e14-d0dc3ce3df6f\">\r\n\r\n\n\n### What you think should happen instead?\n\nI think there is no reason to make slow page loading time because of not using static file caching.\r\n\r\nAnd I figured out the root cause. the problem is airflow webserver's caching is disabled because of bumping up Flask version 1.x to 2.x.\r\n\r\nIn Flask, there is Configuration Option for static file's Expire time for cache-control.\r\nit is `SEND_FILE_MAX_AGE_DEFAULT`.\r\n\r\nIn Flask 1.1.x, the default value of `SEND_FILE_MAX_AGE_DEFAULT` is 12 hours.\r\nhttps://flask.palletsprojects.com/en/1.1.x/api/#flask.Flask.send_file_max_age_default\r\n\r\n\r\nAfter Flask 2.0.x, the default value of `SEND_FILE_MAX_AGE_DEFAULT` is changed to None.\r\nhttps://flask.palletsprojects.com/en/2.0.x/api/#flask.Flask.send_file_max_age_default\r\n\r\n\r\nafter Airflow 2.3.0, Flask version is upgraded to 2.0.x.\r\n\r\nWhen i added flask configuration in app.py\r\nstatic file caching works well.\r\n\r\n\r\nexample is here. https://github.com/VertexToEdge/airflow-docker-compose\r\n\r\n\n\n### How to reproduce\n\nI followed setup instruction in https://airflow.apache.org/docs/apache-airflow/stable/howto/docker-compose/index.html\r\n1. Setup Airflow 2.9.0 with docker-compose\r\n``` bash\r\ncurl -LfO 'https://airflow.apache.org/docs/apache-airflow/2.9.0/docker-compose.yaml'\r\nAIRFLOW_UID=$(id -u) docker compose up\r\n```\r\n\r\n2. access airflow webserver with webbrowser. and refresh the page.\r\n\r\n\n\n### Operating System\n\nUbuntu 22.04.3 LTS\n\n### Versions of Apache Airflow Providers\n\n_No response_\n\n### Deployment\n\nDocker-Compose\n\n### Deployment details\n\n_No response_\n\n### Anything else?\n\nI am newbie in Airflow.\r\nI read airflow installation guide and configruation reference. but I'm not sure if there is a better way to do this without changing the code.\r\nIs there any way to configure static file caching? please just talk to me.\r\n\r\nthanks for reading. have a good day.\n\n### Are you willing to submit PR?\n\n- [X] Yes I am willing to submit a PR!\n\n### Code of Conduct\n\n- [X] I agree to follow this project's [Code of Conduct](https://github.com/apache/airflow/blob/main/CODE_OF_CONDUCT.md)\n\n", "before_files": [{"content": "#\n# Licensed to the Apache Software Foundation (ASF) under one\n# or more contributor license agreements. See the NOTICE file\n# distributed with this work for additional information\n# regarding copyright ownership. The ASF licenses this file\n# to you under the Apache License, Version 2.0 (the\n# \"License\"); you may not use this file except in compliance\n# with the License. You may obtain a copy of the License at\n#\n# http://www.apache.org/licenses/LICENSE-2.0\n#\n# Unless required by applicable law or agreed to in writing,\n# software distributed under the License is distributed on an\n# \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY\n# KIND, either express or implied. See the License for the\n# specific language governing permissions and limitations\n# under the License.\nfrom __future__ import annotations\n\nimport warnings\nfrom datetime import timedelta\n\nfrom flask import Flask\nfrom flask_appbuilder import SQLA\nfrom flask_wtf.csrf import CSRFProtect\nfrom markupsafe import Markup\nfrom sqlalchemy.engine.url import make_url\n\nfrom airflow import settings\nfrom airflow.api_internal.internal_api_call import InternalApiConfig\nfrom airflow.configuration import conf\nfrom airflow.exceptions import AirflowConfigException, RemovedInAirflow3Warning\nfrom airflow.logging_config import configure_logging\nfrom airflow.models import import_all_models\nfrom airflow.settings import _ENABLE_AIP_44\nfrom airflow.utils.json import AirflowJsonProvider\nfrom airflow.www.extensions.init_appbuilder import init_appbuilder\nfrom airflow.www.extensions.init_appbuilder_links import init_appbuilder_links\nfrom airflow.www.extensions.init_auth_manager import get_auth_manager\nfrom airflow.www.extensions.init_cache import init_cache\nfrom airflow.www.extensions.init_dagbag import init_dagbag\nfrom airflow.www.extensions.init_jinja_globals import init_jinja_globals\nfrom airflow.www.extensions.init_manifest_files import configure_manifest_files\nfrom airflow.www.extensions.init_robots import init_robots\nfrom airflow.www.extensions.init_security import (\n init_api_experimental_auth,\n init_check_user_active,\n init_xframe_protection,\n)\nfrom airflow.www.extensions.init_session import init_airflow_session_interface\nfrom airflow.www.extensions.init_views import (\n init_api_auth_provider,\n init_api_connexion,\n init_api_error_handlers,\n init_api_experimental,\n init_api_internal,\n init_appbuilder_views,\n init_error_handlers,\n init_flash_views,\n init_plugins,\n)\nfrom airflow.www.extensions.init_wsgi_middlewares import init_wsgi_middleware\n\napp: Flask | None = None\n\n# Initializes at the module level, so plugins can access it.\n# See: /docs/plugins.rst\ncsrf = CSRFProtect()\n\n\ndef create_app(config=None, testing=False):\n \"\"\"Create a new instance of Airflow WWW app.\"\"\"\n flask_app = Flask(__name__)\n flask_app.secret_key = conf.get(\"webserver\", \"SECRET_KEY\")\n\n flask_app.config[\"PERMANENT_SESSION_LIFETIME\"] = timedelta(minutes=settings.get_session_lifetime_config())\n\n flask_app.config[\"MAX_CONTENT_LENGTH\"] = conf.getfloat(\"webserver\", \"allowed_payload_size\") * 1024 * 1024\n\n webserver_config = conf.get_mandatory_value(\"webserver\", \"config_file\")\n # Enable customizations in webserver_config.py to be applied via Flask.current_app.\n with flask_app.app_context():\n flask_app.config.from_pyfile(webserver_config, silent=True)\n\n flask_app.config[\"TESTING\"] = testing\n flask_app.config[\"SQLALCHEMY_DATABASE_URI\"] = conf.get(\"database\", \"SQL_ALCHEMY_CONN\")\n\n instance_name = conf.get(section=\"webserver\", key=\"instance_name\", fallback=\"Airflow\")\n require_confirmation_dag_change = conf.getboolean(\n section=\"webserver\", key=\"require_confirmation_dag_change\", fallback=False\n )\n instance_name_has_markup = conf.getboolean(\n section=\"webserver\", key=\"instance_name_has_markup\", fallback=False\n )\n if instance_name_has_markup:\n instance_name = Markup(instance_name).striptags()\n\n flask_app.config[\"APP_NAME\"] = instance_name\n flask_app.config[\"REQUIRE_CONFIRMATION_DAG_CHANGE\"] = require_confirmation_dag_change\n\n url = make_url(flask_app.config[\"SQLALCHEMY_DATABASE_URI\"])\n if url.drivername == \"sqlite\" and url.database and not url.database.startswith(\"/\"):\n raise AirflowConfigException(\n f'Cannot use relative path: `{conf.get(\"database\", \"SQL_ALCHEMY_CONN\")}` to connect to sqlite. '\n \"Please use absolute path such as `sqlite:////tmp/airflow.db`.\"\n )\n\n flask_app.config[\"SQLALCHEMY_TRACK_MODIFICATIONS\"] = False\n\n flask_app.config[\"SESSION_COOKIE_HTTPONLY\"] = True\n flask_app.config[\"SESSION_COOKIE_SECURE\"] = conf.getboolean(\"webserver\", \"COOKIE_SECURE\")\n\n cookie_samesite_config = conf.get(\"webserver\", \"COOKIE_SAMESITE\")\n if cookie_samesite_config == \"\":\n warnings.warn(\n \"Old deprecated value found for `cookie_samesite` option in `[webserver]` section. \"\n \"Using `Lax` instead. Change the value to `Lax` in airflow.cfg to remove this warning.\",\n RemovedInAirflow3Warning,\n stacklevel=2,\n )\n cookie_samesite_config = \"Lax\"\n flask_app.config[\"SESSION_COOKIE_SAMESITE\"] = cookie_samesite_config\n\n if config:\n flask_app.config.from_mapping(config)\n\n if \"SQLALCHEMY_ENGINE_OPTIONS\" not in flask_app.config:\n flask_app.config[\"SQLALCHEMY_ENGINE_OPTIONS\"] = settings.prepare_engine_args()\n\n # Configure the JSON encoder used by `|tojson` filter from Flask\n flask_app.json_provider_class = AirflowJsonProvider\n flask_app.json = AirflowJsonProvider(flask_app)\n\n InternalApiConfig.force_database_direct_access()\n\n csrf.init_app(flask_app)\n\n init_wsgi_middleware(flask_app)\n\n db = SQLA()\n db.session = settings.Session\n db.init_app(flask_app)\n\n init_dagbag(flask_app)\n\n init_api_experimental_auth(flask_app)\n\n init_robots(flask_app)\n\n init_cache(flask_app)\n\n init_flash_views(flask_app)\n\n configure_logging()\n configure_manifest_files(flask_app)\n\n import_all_models()\n\n with flask_app.app_context():\n init_appbuilder(flask_app)\n\n init_appbuilder_views(flask_app)\n init_appbuilder_links(flask_app)\n init_plugins(flask_app)\n init_error_handlers(flask_app)\n init_api_connexion(flask_app)\n if conf.getboolean(\"webserver\", \"run_internal_api\", fallback=False):\n if not _ENABLE_AIP_44:\n raise RuntimeError(\"The AIP_44 is not enabled so you cannot use it.\")\n init_api_internal(flask_app)\n init_api_experimental(flask_app)\n init_api_auth_provider(flask_app)\n init_api_error_handlers(flask_app) # needs to be after all api inits to let them add their path first\n\n get_auth_manager().init()\n\n init_jinja_globals(flask_app)\n init_xframe_protection(flask_app)\n init_airflow_session_interface(flask_app)\n init_check_user_active(flask_app)\n return flask_app\n\n\ndef cached_app(config=None, testing=False):\n \"\"\"Return cached instance of Airflow WWW app.\"\"\"\n global app\n if not app:\n app = create_app(config=config, testing=testing)\n return app\n\n\ndef purge_cached_app():\n \"\"\"Remove the cached version of the app in global state.\"\"\"\n global app\n app = None\n", "path": "airflow/www/app.py"}]} | 3,695 | 159 |
gh_patches_debug_31778 | rasdani/github-patches | git_diff | pyqtgraph__pyqtgraph-1326 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Add MultiPlotItem to docs
I noticed it's missing in reviewing #1324. Also [MultiPlotWidget](https://pyqtgraph.readthedocs.io/en/latest/widgets/multiplotwidget.html) should link to it and indicate it wraps the item's methods. `MultiPlotItem.plot` could also use a docstring.
</issue>
<code>
[start of pyqtgraph/widgets/MultiPlotWidget.py]
1 # -*- coding: utf-8 -*-
2 """
3 MultiPlotWidget.py - Convenience class--GraphicsView widget displaying a MultiPlotItem
4 Copyright 2010 Luke Campagnola
5 Distributed under MIT/X11 license. See license.txt for more information.
6 """
7 from ..Qt import QtCore
8 from .GraphicsView import GraphicsView
9 from ..graphicsItems import MultiPlotItem as MultiPlotItem
10
11 __all__ = ['MultiPlotWidget']
12 class MultiPlotWidget(GraphicsView):
13 """Widget implementing a graphicsView with a single MultiPlotItem inside."""
14 def __init__(self, parent=None):
15 self.minPlotHeight = 50
16 self.mPlotItem = MultiPlotItem.MultiPlotItem()
17 GraphicsView.__init__(self, parent)
18 self.enableMouse(False)
19 self.setCentralItem(self.mPlotItem)
20 ## Explicitly wrap methods from mPlotItem
21 #for m in ['setData']:
22 #setattr(self, m, getattr(self.mPlotItem, m))
23 self.setVerticalScrollBarPolicy(QtCore.Qt.ScrollBarAsNeeded)
24 self.setHorizontalScrollBarPolicy(QtCore.Qt.ScrollBarAsNeeded)
25
26 def __getattr__(self, attr): ## implicitly wrap methods from plotItem
27 if hasattr(self.mPlotItem, attr):
28 m = getattr(self.mPlotItem, attr)
29 if hasattr(m, '__call__'):
30 return m
31 raise AttributeError(attr)
32
33 def setMinimumPlotHeight(self, min):
34 """Set the minimum height for each sub-plot displayed.
35
36 If the total height of all plots is greater than the height of the
37 widget, then a scroll bar will appear to provide access to the entire
38 set of plots.
39
40 Added in version 0.9.9
41 """
42 self.minPlotHeight = min
43 self.resizeEvent(None)
44
45 def widgetGroupInterface(self):
46 return (None, MultiPlotWidget.saveState, MultiPlotWidget.restoreState)
47
48 def saveState(self):
49 return {}
50 #return self.plotItem.saveState()
51
52 def restoreState(self, state):
53 pass
54 #return self.plotItem.restoreState(state)
55
56 def close(self):
57 self.mPlotItem.close()
58 self.mPlotItem = None
59 self.setParent(None)
60 GraphicsView.close(self)
61
62 def setRange(self, *args, **kwds):
63 GraphicsView.setRange(self, *args, **kwds)
64 if self.centralWidget is not None:
65 r = self.range
66 minHeight = len(self.mPlotItem.plots) * self.minPlotHeight
67 if r.height() < minHeight:
68 r.setHeight(minHeight)
69 r.setWidth(r.width() - self.verticalScrollBar().width())
70 self.centralWidget.setGeometry(r)
71
72 def resizeEvent(self, ev):
73 if self.closed:
74 return
75 if self.autoPixelRange:
76 self.range = QtCore.QRectF(0, 0, self.size().width(), self.size().height())
77 MultiPlotWidget.setRange(self, self.range, padding=0, disableAutoPixel=False) ## we do this because some subclasses like to redefine setRange in an incompatible way.
78 self.updateMatrix()
79
[end of pyqtgraph/widgets/MultiPlotWidget.py]
[start of pyqtgraph/graphicsItems/MultiPlotItem.py]
1 # -*- coding: utf-8 -*-
2 """
3 MultiPlotItem.py - Graphics item used for displaying an array of PlotItems
4 Copyright 2010 Luke Campagnola
5 Distributed under MIT/X11 license. See license.txt for more information.
6 """
7 from numpy import ndarray
8 from . import GraphicsLayout
9 from ..metaarray import *
10
11
12 __all__ = ['MultiPlotItem']
13 class MultiPlotItem(GraphicsLayout.GraphicsLayout):
14 """
15 Automatically generates a grid of plots from a multi-dimensional array
16 """
17 def __init__(self, *args, **kwds):
18 GraphicsLayout.GraphicsLayout.__init__(self, *args, **kwds)
19 self.plots = []
20
21
22 def plot(self, data, **plotArgs):
23 #self.layout.clear()
24
25 if hasattr(data, 'implements') and data.implements('MetaArray'):
26 if data.ndim != 2:
27 raise Exception("MultiPlot currently only accepts 2D MetaArray.")
28 ic = data.infoCopy()
29 ax = 0
30 for i in [0, 1]:
31 if 'cols' in ic[i]:
32 ax = i
33 break
34 #print "Plotting using axis %d as columns (%d plots)" % (ax, data.shape[ax])
35 for i in range(data.shape[ax]):
36 pi = self.addPlot()
37 self.nextRow()
38 sl = [slice(None)] * 2
39 sl[ax] = i
40 pi.plot(data[tuple(sl)], **plotArgs)
41 #self.layout.addItem(pi, i, 0)
42 self.plots.append((pi, i, 0))
43 info = ic[ax]['cols'][i]
44 title = info.get('title', info.get('name', None))
45 units = info.get('units', None)
46 pi.setLabel('left', text=title, units=units)
47 info = ic[1-ax]
48 title = info.get('title', info.get('name', None))
49 units = info.get('units', None)
50 pi.setLabel('bottom', text=title, units=units)
51 else:
52 raise Exception("Data type %s not (yet?) supported for MultiPlot." % type(data))
53
54 def close(self):
55 for p in self.plots:
56 p[0].close()
57 self.plots = None
58 self.clear()
59
[end of pyqtgraph/graphicsItems/MultiPlotItem.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/pyqtgraph/graphicsItems/MultiPlotItem.py b/pyqtgraph/graphicsItems/MultiPlotItem.py
--- a/pyqtgraph/graphicsItems/MultiPlotItem.py
+++ b/pyqtgraph/graphicsItems/MultiPlotItem.py
@@ -4,22 +4,33 @@
Copyright 2010 Luke Campagnola
Distributed under MIT/X11 license. See license.txt for more information.
"""
-from numpy import ndarray
from . import GraphicsLayout
from ..metaarray import *
-
__all__ = ['MultiPlotItem']
+
+
class MultiPlotItem(GraphicsLayout.GraphicsLayout):
"""
- Automatically generates a grid of plots from a multi-dimensional array
+ :class:`~pyqtgraph.GraphicsLayout` that automatically generates a grid of
+ plots from a MetaArray.
+
+ .. seealso:: :class:`~pyqtgraph.MultiPlotWidget`: Widget containing a MultiPlotItem
"""
+
def __init__(self, *args, **kwds):
GraphicsLayout.GraphicsLayout.__init__(self, *args, **kwds)
self.plots = []
-
def plot(self, data, **plotArgs):
+ """Plot the data from a MetaArray with each array column as a separate
+ :class:`~pyqtgraph.PlotItem`.
+
+ Axis labels are automatically extracted from the array info.
+
+ ``plotArgs`` are passed to :meth:`PlotItem.plot
+ <pyqtgraph.PlotItem.plot>`.
+ """
#self.layout.clear()
if hasattr(data, 'implements') and data.implements('MetaArray'):
diff --git a/pyqtgraph/widgets/MultiPlotWidget.py b/pyqtgraph/widgets/MultiPlotWidget.py
--- a/pyqtgraph/widgets/MultiPlotWidget.py
+++ b/pyqtgraph/widgets/MultiPlotWidget.py
@@ -10,7 +10,8 @@
__all__ = ['MultiPlotWidget']
class MultiPlotWidget(GraphicsView):
- """Widget implementing a graphicsView with a single MultiPlotItem inside."""
+ """Widget implementing a :class:`~pyqtgraph.GraphicsView` with a single
+ :class:`~pyqtgraph.MultiPlotItem` inside."""
def __init__(self, parent=None):
self.minPlotHeight = 50
self.mPlotItem = MultiPlotItem.MultiPlotItem()
| {"golden_diff": "diff --git a/pyqtgraph/graphicsItems/MultiPlotItem.py b/pyqtgraph/graphicsItems/MultiPlotItem.py\n--- a/pyqtgraph/graphicsItems/MultiPlotItem.py\n+++ b/pyqtgraph/graphicsItems/MultiPlotItem.py\n@@ -4,22 +4,33 @@\n Copyright 2010 Luke Campagnola\n Distributed under MIT/X11 license. See license.txt for more information.\n \"\"\"\n-from numpy import ndarray\n from . import GraphicsLayout\n from ..metaarray import *\n \n-\n __all__ = ['MultiPlotItem']\n+\n+\n class MultiPlotItem(GraphicsLayout.GraphicsLayout):\n \"\"\"\n- Automatically generates a grid of plots from a multi-dimensional array\n+ :class:`~pyqtgraph.GraphicsLayout` that automatically generates a grid of\n+ plots from a MetaArray.\n+\n+ .. seealso:: :class:`~pyqtgraph.MultiPlotWidget`: Widget containing a MultiPlotItem\n \"\"\"\n+\n def __init__(self, *args, **kwds):\n GraphicsLayout.GraphicsLayout.__init__(self, *args, **kwds)\n self.plots = []\n \n-\n def plot(self, data, **plotArgs):\n+ \"\"\"Plot the data from a MetaArray with each array column as a separate\n+ :class:`~pyqtgraph.PlotItem`.\n+\n+ Axis labels are automatically extracted from the array info.\n+\n+ ``plotArgs`` are passed to :meth:`PlotItem.plot\n+ <pyqtgraph.PlotItem.plot>`.\n+ \"\"\"\n #self.layout.clear()\n \n if hasattr(data, 'implements') and data.implements('MetaArray'):\ndiff --git a/pyqtgraph/widgets/MultiPlotWidget.py b/pyqtgraph/widgets/MultiPlotWidget.py\n--- a/pyqtgraph/widgets/MultiPlotWidget.py\n+++ b/pyqtgraph/widgets/MultiPlotWidget.py\n@@ -10,7 +10,8 @@\n \n __all__ = ['MultiPlotWidget']\n class MultiPlotWidget(GraphicsView):\n- \"\"\"Widget implementing a graphicsView with a single MultiPlotItem inside.\"\"\"\n+ \"\"\"Widget implementing a :class:`~pyqtgraph.GraphicsView` with a single\n+ :class:`~pyqtgraph.MultiPlotItem` inside.\"\"\"\n def __init__(self, parent=None):\n self.minPlotHeight = 50\n self.mPlotItem = MultiPlotItem.MultiPlotItem()\n", "issue": "Add MultiPlotItem to docs\nI noticed it's missing in reviewing #1324. Also [MultiPlotWidget](https://pyqtgraph.readthedocs.io/en/latest/widgets/multiplotwidget.html) should link to it and indicate it wraps the item's methods. `MultiPlotItem.plot` could also use a docstring.\n", "before_files": [{"content": "# -*- coding: utf-8 -*-\n\"\"\"\nMultiPlotWidget.py - Convenience class--GraphicsView widget displaying a MultiPlotItem\nCopyright 2010 Luke Campagnola\nDistributed under MIT/X11 license. See license.txt for more information.\n\"\"\"\nfrom ..Qt import QtCore\nfrom .GraphicsView import GraphicsView\nfrom ..graphicsItems import MultiPlotItem as MultiPlotItem\n\n__all__ = ['MultiPlotWidget']\nclass MultiPlotWidget(GraphicsView):\n \"\"\"Widget implementing a graphicsView with a single MultiPlotItem inside.\"\"\"\n def __init__(self, parent=None):\n self.minPlotHeight = 50\n self.mPlotItem = MultiPlotItem.MultiPlotItem()\n GraphicsView.__init__(self, parent)\n self.enableMouse(False)\n self.setCentralItem(self.mPlotItem)\n ## Explicitly wrap methods from mPlotItem\n #for m in ['setData']:\n #setattr(self, m, getattr(self.mPlotItem, m))\n self.setVerticalScrollBarPolicy(QtCore.Qt.ScrollBarAsNeeded)\n self.setHorizontalScrollBarPolicy(QtCore.Qt.ScrollBarAsNeeded)\n \n def __getattr__(self, attr): ## implicitly wrap methods from plotItem\n if hasattr(self.mPlotItem, attr):\n m = getattr(self.mPlotItem, attr)\n if hasattr(m, '__call__'):\n return m\n raise AttributeError(attr)\n\n def setMinimumPlotHeight(self, min):\n \"\"\"Set the minimum height for each sub-plot displayed. \n \n If the total height of all plots is greater than the height of the \n widget, then a scroll bar will appear to provide access to the entire\n set of plots.\n \n Added in version 0.9.9\n \"\"\"\n self.minPlotHeight = min\n self.resizeEvent(None)\n\n def widgetGroupInterface(self):\n return (None, MultiPlotWidget.saveState, MultiPlotWidget.restoreState)\n\n def saveState(self):\n return {}\n #return self.plotItem.saveState()\n \n def restoreState(self, state):\n pass\n #return self.plotItem.restoreState(state)\n\n def close(self):\n self.mPlotItem.close()\n self.mPlotItem = None\n self.setParent(None)\n GraphicsView.close(self)\n\n def setRange(self, *args, **kwds):\n GraphicsView.setRange(self, *args, **kwds)\n if self.centralWidget is not None:\n r = self.range\n minHeight = len(self.mPlotItem.plots) * self.minPlotHeight\n if r.height() < minHeight:\n r.setHeight(minHeight)\n r.setWidth(r.width() - self.verticalScrollBar().width())\n self.centralWidget.setGeometry(r)\n\n def resizeEvent(self, ev):\n if self.closed:\n return\n if self.autoPixelRange:\n self.range = QtCore.QRectF(0, 0, self.size().width(), self.size().height())\n MultiPlotWidget.setRange(self, self.range, padding=0, disableAutoPixel=False) ## we do this because some subclasses like to redefine setRange in an incompatible way.\n self.updateMatrix()\n", "path": "pyqtgraph/widgets/MultiPlotWidget.py"}, {"content": "# -*- coding: utf-8 -*-\n\"\"\"\nMultiPlotItem.py - Graphics item used for displaying an array of PlotItems\nCopyright 2010 Luke Campagnola\nDistributed under MIT/X11 license. See license.txt for more information.\n\"\"\"\nfrom numpy import ndarray\nfrom . import GraphicsLayout\nfrom ..metaarray import *\n\n\n__all__ = ['MultiPlotItem']\nclass MultiPlotItem(GraphicsLayout.GraphicsLayout):\n \"\"\"\n Automatically generates a grid of plots from a multi-dimensional array\n \"\"\"\n def __init__(self, *args, **kwds):\n GraphicsLayout.GraphicsLayout.__init__(self, *args, **kwds)\n self.plots = []\n\n\n def plot(self, data, **plotArgs):\n #self.layout.clear()\n\n if hasattr(data, 'implements') and data.implements('MetaArray'):\n if data.ndim != 2:\n raise Exception(\"MultiPlot currently only accepts 2D MetaArray.\")\n ic = data.infoCopy()\n ax = 0\n for i in [0, 1]:\n if 'cols' in ic[i]:\n ax = i\n break\n #print \"Plotting using axis %d as columns (%d plots)\" % (ax, data.shape[ax])\n for i in range(data.shape[ax]):\n pi = self.addPlot()\n self.nextRow()\n sl = [slice(None)] * 2\n sl[ax] = i\n pi.plot(data[tuple(sl)], **plotArgs)\n #self.layout.addItem(pi, i, 0)\n self.plots.append((pi, i, 0))\n info = ic[ax]['cols'][i]\n title = info.get('title', info.get('name', None))\n units = info.get('units', None)\n pi.setLabel('left', text=title, units=units)\n info = ic[1-ax]\n title = info.get('title', info.get('name', None))\n units = info.get('units', None)\n pi.setLabel('bottom', text=title, units=units)\n else:\n raise Exception(\"Data type %s not (yet?) supported for MultiPlot.\" % type(data))\n\n def close(self):\n for p in self.plots:\n p[0].close()\n self.plots = None\n self.clear()\n", "path": "pyqtgraph/graphicsItems/MultiPlotItem.py"}]} | 2,063 | 511 |
gh_patches_debug_33409 | rasdani/github-patches | git_diff | bridgecrewio__checkov-4614 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
False positive for tests in bicep: CKV_AZURE_4, CKV_AZURE_5, CKV_AZURE_7, CKV_AZURE_8
**Describe the issue**
false positive for tests CKV_AZURE_4, CKV_AZURE_5, CKV_AZURE_7, CKV_AZURE_8
**Examples**
Here is the bicep code
Code made shorter.
```
resource aks 'Microsoft.ContainerService/managedClusters@2022-11-01' = {
properties: {
enableRBAC: true
}
addonProfiles: {
omsAgent: {
enabled: true
config: {
logAnalyticsWorkspaceResourceId: logAnalyticsWorkspaceId
}
}
azurePolicy: {
enabled: true
config: {
version: 'v2'
}
}
kubeDashboard: {
enabled: false
}
}
networkProfile: {
networkPlugin: 'azure'
networkPolicy: 'azure'
}
}
}
```
**Version (please complete the following information):**
- checkov v2.1.244
</issue>
<code>
[start of checkov/arm/checks/resource/AKSLoggingEnabled.py]
1 from checkov.common.models.enums import CheckResult, CheckCategories
2 from checkov.arm.base_resource_check import BaseResourceCheck
3
4
5 class AKSLoggingEnabled(BaseResourceCheck):
6 def __init__(self):
7 # apiVersion 2017-08-03 = Fail - No addonProfiles option to configure
8 name = "Ensure AKS logging to Azure Monitoring is Configured"
9 id = "CKV_AZURE_4"
10 supported_resources = ['Microsoft.ContainerService/managedClusters']
11 categories = [CheckCategories.KUBERNETES]
12 super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources)
13
14 def scan_resource_conf(self, conf):
15 if conf.get("apiVersion"):
16 if conf["apiVersion"] == "2017-08-31":
17 # No addonProfiles option to configure
18 return CheckResult.FAILED
19
20 properties = conf.get("properties")
21 if isinstance(properties, dict):
22 addon_profiles = properties.get("addonProfiles")
23 if isinstance(addon_profiles, dict):
24 omsagent = addon_profiles.get("omsagent")
25 if isinstance(omsagent, dict) and omsagent.get("enabled"):
26 return CheckResult.PASSED
27
28 return CheckResult.FAILED
29
30
31 check = AKSLoggingEnabled()
32
[end of checkov/arm/checks/resource/AKSLoggingEnabled.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/checkov/arm/checks/resource/AKSLoggingEnabled.py b/checkov/arm/checks/resource/AKSLoggingEnabled.py
--- a/checkov/arm/checks/resource/AKSLoggingEnabled.py
+++ b/checkov/arm/checks/resource/AKSLoggingEnabled.py
@@ -1,18 +1,22 @@
+from __future__ import annotations
+
+from typing import Any
+
from checkov.common.models.enums import CheckResult, CheckCategories
from checkov.arm.base_resource_check import BaseResourceCheck
class AKSLoggingEnabled(BaseResourceCheck):
- def __init__(self):
+ def __init__(self) -> None:
# apiVersion 2017-08-03 = Fail - No addonProfiles option to configure
name = "Ensure AKS logging to Azure Monitoring is Configured"
id = "CKV_AZURE_4"
- supported_resources = ['Microsoft.ContainerService/managedClusters']
- categories = [CheckCategories.KUBERNETES]
+ supported_resources = ("Microsoft.ContainerService/managedClusters",)
+ categories = (CheckCategories.KUBERNETES,)
super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources)
- def scan_resource_conf(self, conf):
- if conf.get("apiVersion"):
+ def scan_resource_conf(self, conf: dict[str, Any]) -> CheckResult:
+ if "apiVersion" in conf:
if conf["apiVersion"] == "2017-08-31":
# No addonProfiles option to configure
return CheckResult.FAILED
@@ -22,6 +26,10 @@
addon_profiles = properties.get("addonProfiles")
if isinstance(addon_profiles, dict):
omsagent = addon_profiles.get("omsagent")
+ if not omsagent:
+ # it can be written in lowercase or camelCase
+ omsagent = addon_profiles.get("omsAgent")
+
if isinstance(omsagent, dict) and omsagent.get("enabled"):
return CheckResult.PASSED
| {"golden_diff": "diff --git a/checkov/arm/checks/resource/AKSLoggingEnabled.py b/checkov/arm/checks/resource/AKSLoggingEnabled.py\n--- a/checkov/arm/checks/resource/AKSLoggingEnabled.py\n+++ b/checkov/arm/checks/resource/AKSLoggingEnabled.py\n@@ -1,18 +1,22 @@\n+from __future__ import annotations\n+\n+from typing import Any\n+\n from checkov.common.models.enums import CheckResult, CheckCategories\n from checkov.arm.base_resource_check import BaseResourceCheck\n \n \n class AKSLoggingEnabled(BaseResourceCheck):\n- def __init__(self):\n+ def __init__(self) -> None:\n # apiVersion 2017-08-03 = Fail - No addonProfiles option to configure\n name = \"Ensure AKS logging to Azure Monitoring is Configured\"\n id = \"CKV_AZURE_4\"\n- supported_resources = ['Microsoft.ContainerService/managedClusters']\n- categories = [CheckCategories.KUBERNETES]\n+ supported_resources = (\"Microsoft.ContainerService/managedClusters\",)\n+ categories = (CheckCategories.KUBERNETES,)\n super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources)\n \n- def scan_resource_conf(self, conf):\n- if conf.get(\"apiVersion\"):\n+ def scan_resource_conf(self, conf: dict[str, Any]) -> CheckResult:\n+ if \"apiVersion\" in conf:\n if conf[\"apiVersion\"] == \"2017-08-31\":\n # No addonProfiles option to configure\n return CheckResult.FAILED\n@@ -22,6 +26,10 @@\n addon_profiles = properties.get(\"addonProfiles\")\n if isinstance(addon_profiles, dict):\n omsagent = addon_profiles.get(\"omsagent\")\n+ if not omsagent:\n+ # it can be written in lowercase or camelCase\n+ omsagent = addon_profiles.get(\"omsAgent\")\n+\n if isinstance(omsagent, dict) and omsagent.get(\"enabled\"):\n return CheckResult.PASSED\n", "issue": "False positive for tests in bicep: CKV_AZURE_4, CKV_AZURE_5, CKV_AZURE_7, CKV_AZURE_8\n**Describe the issue**\r\nfalse positive for tests CKV_AZURE_4, CKV_AZURE_5, CKV_AZURE_7, CKV_AZURE_8\r\n\r\n\r\n**Examples**\r\nHere is the bicep code\r\n Code made shorter.\r\n```\r\nresource aks 'Microsoft.ContainerService/managedClusters@2022-11-01' = {\r\n properties: {\r\n enableRBAC: true\r\n }\r\n addonProfiles: {\r\n omsAgent: {\r\n enabled: true\r\n config: {\r\n logAnalyticsWorkspaceResourceId: logAnalyticsWorkspaceId\r\n }\r\n }\r\n azurePolicy: {\r\n enabled: true\r\n config: {\r\n version: 'v2'\r\n }\r\n }\r\n kubeDashboard: {\r\n enabled: false\r\n }\r\n }\r\n networkProfile: {\r\n networkPlugin: 'azure'\r\n networkPolicy: 'azure'\r\n }\r\n }\r\n}\r\n```\r\n\r\n**Version (please complete the following information):**\r\n - checkov v2.1.244\r\n\r\n\n", "before_files": [{"content": "from checkov.common.models.enums import CheckResult, CheckCategories\nfrom checkov.arm.base_resource_check import BaseResourceCheck\n\n\nclass AKSLoggingEnabled(BaseResourceCheck):\n def __init__(self):\n # apiVersion 2017-08-03 = Fail - No addonProfiles option to configure\n name = \"Ensure AKS logging to Azure Monitoring is Configured\"\n id = \"CKV_AZURE_4\"\n supported_resources = ['Microsoft.ContainerService/managedClusters']\n categories = [CheckCategories.KUBERNETES]\n super().__init__(name=name, id=id, categories=categories, supported_resources=supported_resources)\n\n def scan_resource_conf(self, conf):\n if conf.get(\"apiVersion\"):\n if conf[\"apiVersion\"] == \"2017-08-31\":\n # No addonProfiles option to configure\n return CheckResult.FAILED\n\n properties = conf.get(\"properties\")\n if isinstance(properties, dict):\n addon_profiles = properties.get(\"addonProfiles\")\n if isinstance(addon_profiles, dict):\n omsagent = addon_profiles.get(\"omsagent\")\n if isinstance(omsagent, dict) and omsagent.get(\"enabled\"):\n return CheckResult.PASSED\n\n return CheckResult.FAILED\n\n\ncheck = AKSLoggingEnabled()\n", "path": "checkov/arm/checks/resource/AKSLoggingEnabled.py"}]} | 1,147 | 454 |
gh_patches_debug_18581 | rasdani/github-patches | git_diff | scikit-image__scikit-image-219 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
message about unit tests not available
If scikits-image is installed without nose, a message is printed about unit tests not being available is printed on import but it is a little bit distracting to the casual end-user.
</issue>
<code>
[start of skimage/__init__.py]
1 """Image Processing SciKit (Toolbox for SciPy)
2
3 ``scikits-image`` (a.k.a. ``skimage``) is a collection of algorithms for image
4 processing and computer vision.
5
6 The main package of ``skimage`` only provides a few utilities for converting
7 between image data types; for most features, you need to import one of the
8 following subpackages:
9
10 Subpackages
11 -----------
12 color
13 Color space conversion.
14 data
15 Test images and example data.
16 draw
17 Image drawing primitives (lines, text, etc.).
18 exposure
19 Image intensity adjustment (e.g., histogram equalization).
20 feature
21 Feature detection (e.g. texture analysis, corners, etc.).
22 filter
23 Sharpening, edge finding, denoising, etc.
24 graph
25 Graph-theoretic operations, e.g. dynamic programming (shortest paths).
26 io
27 Reading, saving, and displaying images and video.
28 measure
29 Measurement of image properties, e.g., similarity and contours.
30 morphology
31 Morphological operations, e.g. opening or skeletonization.
32 segmentation
33 Splitting an image into self-similar regions.
34 transform
35 Geometric and other transforms, e.g. rotation or the Radon transform.
36 util
37 Generic utilities.
38
39 Utility Functions
40 -----------------
41 get_log
42 Returns the ``skimage`` log. Use this to print debug output.
43 img_as_float
44 Convert an image to floating point format, with values in [0, 1].
45 img_as_uint
46 Convert an image to unsigned integer format, with values in [0, 65535].
47 img_as_int
48 Convert an image to signed integer format, with values in [-32768, 32767].
49 img_as_ubyte
50 Convert an image to unsigned byte format, with values in [0, 255].
51
52 """
53
54 import os.path as _osp
55
56 pkg_dir = _osp.abspath(_osp.dirname(__file__))
57 data_dir = _osp.join(pkg_dir, 'data')
58
59 try:
60 from .version import version as __version__
61 except ImportError:
62 __version__ = "unbuilt-dev"
63
64
65 def _setup_test(verbose=False):
66 import functools
67
68 args = ['', '--exe', '-w', pkg_dir]
69 if verbose:
70 args.extend(['-v', '-s'])
71
72 try:
73 import nose as _nose
74 except ImportError:
75 print("Could not load nose. Unit tests not available.")
76 return None
77 else:
78 f = functools.partial(_nose.run, 'skimage', argv=args)
79 f.__doc__ = 'Invoke the skimage test suite.'
80 return f
81
82 test = _setup_test()
83 if test is None:
84 try:
85 del test
86 except NameError:
87 pass
88
89 test_verbose = _setup_test(verbose=True)
90 if test_verbose is None:
91 try:
92 del test
93 except NameError:
94 pass
95
96
97 def get_log(name=None):
98 """Return a console logger.
99
100 Output may be sent to the logger using the `debug`, `info`, `warning`,
101 `error` and `critical` methods.
102
103 Parameters
104 ----------
105 name : str
106 Name of the log.
107
108 References
109 ----------
110 .. [1] Logging facility for Python,
111 http://docs.python.org/library/logging.html
112
113 """
114 import logging
115
116 if name is None:
117 name = 'skimage'
118 else:
119 name = 'skimage.' + name
120
121 log = logging.getLogger(name)
122 return log
123
124
125 def _setup_log():
126 """Configure root logger.
127
128 """
129 import logging
130 import sys
131
132 log = logging.getLogger()
133
134 try:
135 handler = logging.StreamHandler(stream=sys.stdout)
136 except TypeError:
137 handler = logging.StreamHandler(strm=sys.stdout)
138
139 formatter = logging.Formatter(
140 '%(name)s: %(levelname)s: %(message)s'
141 )
142 handler.setFormatter(formatter)
143
144 log.addHandler(handler)
145 log.setLevel(logging.WARNING)
146
147 _setup_log()
148
149 from .util.dtype import *
150
[end of skimage/__init__.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/skimage/__init__.py b/skimage/__init__.py
--- a/skimage/__init__.py
+++ b/skimage/__init__.py
@@ -72,26 +72,20 @@
try:
import nose as _nose
except ImportError:
- print("Could not load nose. Unit tests not available.")
- return None
+ def broken_test_func():
+ """This would invoke the skimage test suite, but nose couldn't be
+ imported so the test suite can not run.
+ """
+ raise ImportError("Could not load nose. Unit tests not available.")
+ return broken_test_func
else:
f = functools.partial(_nose.run, 'skimage', argv=args)
f.__doc__ = 'Invoke the skimage test suite.'
return f
-test = _setup_test()
-if test is None:
- try:
- del test
- except NameError:
- pass
+test = _setup_test()
test_verbose = _setup_test(verbose=True)
-if test_verbose is None:
- try:
- del test
- except NameError:
- pass
def get_log(name=None):
| {"golden_diff": "diff --git a/skimage/__init__.py b/skimage/__init__.py\n--- a/skimage/__init__.py\n+++ b/skimage/__init__.py\n@@ -72,26 +72,20 @@\n try:\n import nose as _nose\n except ImportError:\n- print(\"Could not load nose. Unit tests not available.\")\n- return None\n+ def broken_test_func():\n+ \"\"\"This would invoke the skimage test suite, but nose couldn't be\n+ imported so the test suite can not run.\n+ \"\"\"\n+ raise ImportError(\"Could not load nose. Unit tests not available.\")\n+ return broken_test_func\n else:\n f = functools.partial(_nose.run, 'skimage', argv=args)\n f.__doc__ = 'Invoke the skimage test suite.'\n return f\n \n-test = _setup_test()\n-if test is None:\n- try:\n- del test\n- except NameError:\n- pass\n \n+test = _setup_test()\n test_verbose = _setup_test(verbose=True)\n-if test_verbose is None:\n- try:\n- del test\n- except NameError:\n- pass\n \n \n def get_log(name=None):\n", "issue": "message about unit tests not available\nIf scikits-image is installed without nose, a message is printed about unit tests not being available is printed on import but it is a little bit distracting to the casual end-user.\n\n", "before_files": [{"content": "\"\"\"Image Processing SciKit (Toolbox for SciPy)\n\n``scikits-image`` (a.k.a. ``skimage``) is a collection of algorithms for image\nprocessing and computer vision.\n\nThe main package of ``skimage`` only provides a few utilities for converting\nbetween image data types; for most features, you need to import one of the\nfollowing subpackages:\n\nSubpackages\n-----------\ncolor\n Color space conversion.\ndata\n Test images and example data.\ndraw\n Image drawing primitives (lines, text, etc.).\nexposure\n Image intensity adjustment (e.g., histogram equalization).\nfeature\n Feature detection (e.g. texture analysis, corners, etc.).\nfilter\n Sharpening, edge finding, denoising, etc.\ngraph\n Graph-theoretic operations, e.g. dynamic programming (shortest paths).\nio\n Reading, saving, and displaying images and video.\nmeasure\n Measurement of image properties, e.g., similarity and contours.\nmorphology\n Morphological operations, e.g. opening or skeletonization.\nsegmentation\n Splitting an image into self-similar regions.\ntransform\n Geometric and other transforms, e.g. rotation or the Radon transform.\nutil\n Generic utilities.\n\nUtility Functions\n-----------------\nget_log\n Returns the ``skimage`` log. Use this to print debug output.\nimg_as_float\n Convert an image to floating point format, with values in [0, 1].\nimg_as_uint\n Convert an image to unsigned integer format, with values in [0, 65535].\nimg_as_int\n Convert an image to signed integer format, with values in [-32768, 32767].\nimg_as_ubyte\n Convert an image to unsigned byte format, with values in [0, 255].\n\n\"\"\"\n\nimport os.path as _osp\n\npkg_dir = _osp.abspath(_osp.dirname(__file__))\ndata_dir = _osp.join(pkg_dir, 'data')\n\ntry:\n from .version import version as __version__\nexcept ImportError:\n __version__ = \"unbuilt-dev\"\n\n\ndef _setup_test(verbose=False):\n import functools\n\n args = ['', '--exe', '-w', pkg_dir]\n if verbose:\n args.extend(['-v', '-s'])\n\n try:\n import nose as _nose\n except ImportError:\n print(\"Could not load nose. Unit tests not available.\")\n return None\n else:\n f = functools.partial(_nose.run, 'skimage', argv=args)\n f.__doc__ = 'Invoke the skimage test suite.'\n return f\n\ntest = _setup_test()\nif test is None:\n try:\n del test\n except NameError:\n pass\n\ntest_verbose = _setup_test(verbose=True)\nif test_verbose is None:\n try:\n del test\n except NameError:\n pass\n\n\ndef get_log(name=None):\n \"\"\"Return a console logger.\n\n Output may be sent to the logger using the `debug`, `info`, `warning`,\n `error` and `critical` methods.\n\n Parameters\n ----------\n name : str\n Name of the log.\n\n References\n ----------\n .. [1] Logging facility for Python,\n http://docs.python.org/library/logging.html\n\n \"\"\"\n import logging\n\n if name is None:\n name = 'skimage'\n else:\n name = 'skimage.' + name\n\n log = logging.getLogger(name)\n return log\n\n\ndef _setup_log():\n \"\"\"Configure root logger.\n\n \"\"\"\n import logging\n import sys\n\n log = logging.getLogger()\n\n try:\n handler = logging.StreamHandler(stream=sys.stdout)\n except TypeError:\n handler = logging.StreamHandler(strm=sys.stdout)\n\n formatter = logging.Formatter(\n '%(name)s: %(levelname)s: %(message)s'\n )\n handler.setFormatter(formatter)\n\n log.addHandler(handler)\n log.setLevel(logging.WARNING)\n\n_setup_log()\n\nfrom .util.dtype import *\n", "path": "skimage/__init__.py"}]} | 1,791 | 265 |
gh_patches_debug_18589 | rasdani/github-patches | git_diff | ethereum__web3.py-1763 | You will be provided with a partial code base and an issue statement explaining a problem to resolve.
<issue>
Upgrade Parity version in test infrastructure
### What was wrong?
Our Parity tests run on version 2.3.5. According to a recent OpenEthereum [blog post](https://medium.com/openethereum/vision-for-openethereum-ex-parity-client-eb7b11f6eef8), latest stable recommendation is 2.5.13.
</issue>
<code>
[start of web3/middleware/validation.py]
1 from typing import (
2 TYPE_CHECKING,
3 Any,
4 Callable,
5 )
6
7 from eth_utils.curried import (
8 apply_formatter_at_index,
9 apply_formatter_if,
10 apply_formatters_to_dict,
11 is_null,
12 )
13 from eth_utils.toolz import (
14 complement,
15 compose,
16 curry,
17 dissoc,
18 )
19 from hexbytes import (
20 HexBytes,
21 )
22
23 from web3._utils.rpc_abi import (
24 RPC,
25 )
26 from web3.exceptions import (
27 ExtraDataLengthError,
28 ValidationError,
29 )
30 from web3.middleware.formatting import (
31 construct_web3_formatting_middleware,
32 )
33 from web3.types import (
34 FormattersDict,
35 TxParams,
36 )
37
38 if TYPE_CHECKING:
39 from web3 import Web3 # noqa: F401
40
41 MAX_EXTRADATA_LENGTH = 32
42
43 is_not_null = complement(is_null)
44
45
46 @curry
47 def validate_chain_id(web3: "Web3", chain_id: int) -> int:
48 if int(chain_id) == web3.eth.chainId:
49 return chain_id
50 else:
51 raise ValidationError(
52 "The transaction declared chain ID %r, "
53 "but the connected node is on %r" % (
54 chain_id,
55 web3.eth.chainId,
56 )
57 )
58
59
60 def check_extradata_length(val: Any) -> Any:
61 if not isinstance(val, (str, int, bytes)):
62 return val
63 result = HexBytes(val)
64 if len(result) > MAX_EXTRADATA_LENGTH:
65 raise ExtraDataLengthError(
66 "The field extraData is %d bytes, but should be %d. "
67 "It is quite likely that you are connected to a POA chain. "
68 "Refer to "
69 "http://web3py.readthedocs.io/en/stable/middleware.html#geth-style-proof-of-authority "
70 "for more details. The full extraData is: %r" % (
71 len(result), MAX_EXTRADATA_LENGTH, result
72 )
73 )
74 return val
75
76
77 def transaction_normalizer(transaction: TxParams) -> TxParams:
78 return dissoc(transaction, 'chainId')
79
80
81 def transaction_param_validator(web3: "Web3") -> Callable[..., Any]:
82 transactions_params_validators = {
83 "chainId": apply_formatter_if(
84 # Bypass `validate_chain_id` if chainId can't be determined
85 lambda _: is_not_null(web3.eth.chainId),
86 validate_chain_id(web3),
87 ),
88 }
89 return apply_formatter_at_index(
90 apply_formatters_to_dict(transactions_params_validators),
91 0
92 )
93
94
95 BLOCK_VALIDATORS = {
96 'extraData': check_extradata_length,
97 }
98
99
100 block_validator = apply_formatter_if(
101 is_not_null,
102 apply_formatters_to_dict(BLOCK_VALIDATORS)
103 )
104
105
106 @curry
107 def chain_id_validator(web3: "Web3") -> Callable[..., Any]:
108 return compose(
109 apply_formatter_at_index(transaction_normalizer, 0),
110 transaction_param_validator(web3)
111 )
112
113
114 def build_validators_with_web3(w3: "Web3") -> FormattersDict:
115 return dict(
116 request_formatters={
117 RPC.eth_sendTransaction: chain_id_validator(w3),
118 RPC.eth_estimateGas: chain_id_validator(w3),
119 RPC.eth_call: chain_id_validator(w3),
120 },
121 result_formatters={
122 RPC.eth_getBlockByHash: block_validator,
123 RPC.eth_getBlockByNumber: block_validator,
124 },
125 )
126
127
128 validation_middleware = construct_web3_formatting_middleware(build_validators_with_web3)
129
[end of web3/middleware/validation.py]
</code>
I need you to solve this issue by generating a single patch file that I can apply directly to this repository using git apply. Please respond with a single patch file in the following format.
<patch>
diff --git a/file.py b/file.py
--- a/file.py
+++ b/file.py
@@ -1,27 +1,35 @@
def euclidean(a, b):
- while b:
- a, b = b, a % b
- return a
+ if b == 0:
+ return a
+ return euclidean(b, a % b)
def bresenham(x0, y0, x1, y1):
points = []
dx = abs(x1 - x0)
dy = abs(y1 - y0)
- sx = 1 if x0 < x1 else -1
- sy = 1 if y0 < y1 else -1
- err = dx - dy
+ x, y = x0, y0
+ sx = -1 if x0 > x1 else 1
+ sy = -1 if y0 > y1 else 1
- while True:
- points.append((x0, y0))
- if x0 == x1 and y0 == y1:
- break
- e2 = 2 * err
- if e2 > -dy:
- err -= dy
- x0 += sx
- if e2 < dx:
- err += dx
- y0 += sy
+ if dx > dy:
+ err = dx / 2.0
+ while x != x1:
+ points.append((x, y))
+ err -= dy
+ if err < 0:
+ y += sy
+ err += dx
+ x += sx
+ else:
+ err = dy / 2.0
+ while y != y1:
+ points.append((x, y))
+ err -= dx
+ if err < 0:
+ x += sx
+ err += dy
+ y += sy
+
+ points.append((x, y))
return points
</patch> | diff --git a/web3/middleware/validation.py b/web3/middleware/validation.py
--- a/web3/middleware/validation.py
+++ b/web3/middleware/validation.py
@@ -9,6 +9,7 @@
apply_formatter_if,
apply_formatters_to_dict,
is_null,
+ is_string,
)
from eth_utils.toolz import (
complement,
@@ -20,6 +21,9 @@
HexBytes,
)
+from web3._utils.formatters import (
+ hex_to_integer,
+)
from web3._utils.rpc_abi import (
RPC,
)
@@ -42,10 +46,12 @@
is_not_null = complement(is_null)
+to_integer_if_hex = apply_formatter_if(is_string, hex_to_integer)
+
@curry
def validate_chain_id(web3: "Web3", chain_id: int) -> int:
- if int(chain_id) == web3.eth.chainId:
+ if to_integer_if_hex(chain_id) == web3.eth.chainId:
return chain_id
else:
raise ValidationError(
| {"golden_diff": "diff --git a/web3/middleware/validation.py b/web3/middleware/validation.py\n--- a/web3/middleware/validation.py\n+++ b/web3/middleware/validation.py\n@@ -9,6 +9,7 @@\n apply_formatter_if,\n apply_formatters_to_dict,\n is_null,\n+ is_string,\n )\n from eth_utils.toolz import (\n complement,\n@@ -20,6 +21,9 @@\n HexBytes,\n )\n \n+from web3._utils.formatters import (\n+ hex_to_integer,\n+)\n from web3._utils.rpc_abi import (\n RPC,\n )\n@@ -42,10 +46,12 @@\n \n is_not_null = complement(is_null)\n \n+to_integer_if_hex = apply_formatter_if(is_string, hex_to_integer)\n+\n \n @curry\n def validate_chain_id(web3: \"Web3\", chain_id: int) -> int:\n- if int(chain_id) == web3.eth.chainId:\n+ if to_integer_if_hex(chain_id) == web3.eth.chainId:\n return chain_id\n else:\n raise ValidationError(\n", "issue": "Upgrade Parity version in test infrastructure\n### What was wrong?\r\n\r\nOur Parity tests run on version 2.3.5. According to a recent OpenEthereum [blog post](https://medium.com/openethereum/vision-for-openethereum-ex-parity-client-eb7b11f6eef8), latest stable recommendation is 2.5.13.\n", "before_files": [{"content": "from typing import (\n TYPE_CHECKING,\n Any,\n Callable,\n)\n\nfrom eth_utils.curried import (\n apply_formatter_at_index,\n apply_formatter_if,\n apply_formatters_to_dict,\n is_null,\n)\nfrom eth_utils.toolz import (\n complement,\n compose,\n curry,\n dissoc,\n)\nfrom hexbytes import (\n HexBytes,\n)\n\nfrom web3._utils.rpc_abi import (\n RPC,\n)\nfrom web3.exceptions import (\n ExtraDataLengthError,\n ValidationError,\n)\nfrom web3.middleware.formatting import (\n construct_web3_formatting_middleware,\n)\nfrom web3.types import (\n FormattersDict,\n TxParams,\n)\n\nif TYPE_CHECKING:\n from web3 import Web3 # noqa: F401\n\nMAX_EXTRADATA_LENGTH = 32\n\nis_not_null = complement(is_null)\n\n\n@curry\ndef validate_chain_id(web3: \"Web3\", chain_id: int) -> int:\n if int(chain_id) == web3.eth.chainId:\n return chain_id\n else:\n raise ValidationError(\n \"The transaction declared chain ID %r, \"\n \"but the connected node is on %r\" % (\n chain_id,\n web3.eth.chainId,\n )\n )\n\n\ndef check_extradata_length(val: Any) -> Any:\n if not isinstance(val, (str, int, bytes)):\n return val\n result = HexBytes(val)\n if len(result) > MAX_EXTRADATA_LENGTH:\n raise ExtraDataLengthError(\n \"The field extraData is %d bytes, but should be %d. \"\n \"It is quite likely that you are connected to a POA chain. \"\n \"Refer to \"\n \"http://web3py.readthedocs.io/en/stable/middleware.html#geth-style-proof-of-authority \"\n \"for more details. The full extraData is: %r\" % (\n len(result), MAX_EXTRADATA_LENGTH, result\n )\n )\n return val\n\n\ndef transaction_normalizer(transaction: TxParams) -> TxParams:\n return dissoc(transaction, 'chainId')\n\n\ndef transaction_param_validator(web3: \"Web3\") -> Callable[..., Any]:\n transactions_params_validators = {\n \"chainId\": apply_formatter_if(\n # Bypass `validate_chain_id` if chainId can't be determined\n lambda _: is_not_null(web3.eth.chainId),\n validate_chain_id(web3),\n ),\n }\n return apply_formatter_at_index(\n apply_formatters_to_dict(transactions_params_validators),\n 0\n )\n\n\nBLOCK_VALIDATORS = {\n 'extraData': check_extradata_length,\n}\n\n\nblock_validator = apply_formatter_if(\n is_not_null,\n apply_formatters_to_dict(BLOCK_VALIDATORS)\n)\n\n\n@curry\ndef chain_id_validator(web3: \"Web3\") -> Callable[..., Any]:\n return compose(\n apply_formatter_at_index(transaction_normalizer, 0),\n transaction_param_validator(web3)\n )\n\n\ndef build_validators_with_web3(w3: \"Web3\") -> FormattersDict:\n return dict(\n request_formatters={\n RPC.eth_sendTransaction: chain_id_validator(w3),\n RPC.eth_estimateGas: chain_id_validator(w3),\n RPC.eth_call: chain_id_validator(w3),\n },\n result_formatters={\n RPC.eth_getBlockByHash: block_validator,\n RPC.eth_getBlockByNumber: block_validator,\n },\n )\n\n\nvalidation_middleware = construct_web3_formatting_middleware(build_validators_with_web3)\n", "path": "web3/middleware/validation.py"}]} | 1,663 | 236 |
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