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test-dataset-context-aware-fim-autocomplete-oracle-bm25

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import argparse import logging import os import numpy as np import imageio from torchvision.utils import make_grid import torch from dpsda.logging import setup_logging from dpsda.data_loader import load_data from dpsda.feature_extractor import extract_features from dpsda.metrics import make_fid_stats from dpsda.metrics import compute_fid from dpsda.dp_counter import dp_nn_histogram from dpsda.arg_utils import str2bool from apis import get_api_class_from_name def parse_args(): parser = argparse.ArgumentParser() parser.add_argument( '--api', type=str, required=True, choices=['DALLE', 'stable_diffusion', 'improved_diffusion'], help='Which foundation model API to use') parser.add_argument( '--plot_images', type=str2bool, default=True, help='Whether to save generated images in PNG files') parser.add_argument( '--data_checkpoint_path', type=str, default="", help='Path to the data checkpoint') parser.add_argument( '--data_checkpoint_step', type=int, default=-1, help='Iteration of the data checkpoint') parser.add_argument( '--num_samples_schedule', type=str, default='50000,'*9 + '50000', help='Number of samples to generate at each iteration') parser.add_argument( '--variation_degree_schedule', type=str, default='0,'*9 + '0', help='Variation degree at each iteration') parser.add_argument( '--num_fid_samples', type=int, default=50000, help='Number of generated samples to compute FID') parser.add_argument( '--num_private_samples', type=int, default=50000, help='Number of private samples to load') parser.add_argument( '--noise_multiplier', type=float, default=0.0, help='Noise multiplier for DP NN histogram') parser.add_argument( '--lookahead_degree', type=int, default=0, help=('Lookahead degree for computing distances between private and ' 'generated images')) parser.add_argument( '--feature_extractor', type=str, default='clip_vit_b_32', choices=['inception_v3', 'clip_vit_b_32', 'original'], help='Which image feature extractor to use') parser.add_argument( '--num_nearest_neighbor', type=int, default=1, help='Number of nearest neighbors to find in DP NN histogram') parser.add_argument( '--nn_mode', type=str, default='L2', choices=['L2', 'IP'], help='Which distance metric to use in DP NN histogram') parser.add_argument( '--private_image_size', type=int, default=1024, help='Size of private images') parser.add_argument( '--tmp_folder', type=str, default='result/tmp', help='Temporary folder for storing intermediate results') parser.add_argument( '--result_folder', type=str, default='result', help='Folder for storing results') parser.add_argument( '--data_folder', type=str, required=True, help='Folder that contains the private images') parser.add_argument( '--count_threshold', type=float, default=0.0, help='Threshold for DP NN histogram') parser.add_argument( '--compute_fid', type=str2bool, default=True, help='Whether to compute FID') parser.add_argument( '--fid_dataset_name', type=str, default='customized_dataset', help=('Name of the dataset for computing FID against. If ' 'fid_dataset_name and fid_dataset_split in combination are one ' 'of the precomputed datasets in ' 'https://github.com/GaParmar/clean-fid and make_fid_stats=False,' ' then the precomputed statistics will be used. Otherwise, the ' 'statistics will be computed using the private samples and saved' ' with fid_dataset_name and fid_dataset_split for future use.')) parser.add_argument( '--fid_dataset_split', type=str, default='train', help=('Split of the dataset for computing FID against. If ' 'fid_dataset_name and fid_dataset_split in combination are one ' 'of the precomputed datasets in ' 'https://github.com/GaParmar/clean-fid and make_fid_stats=False,' ' then the precomputed statistics will be used. Otherwise, the ' 'statistics will be computed using the private samples and saved' ' with fid_dataset_name and fid_dataset_split for future use.')) parser.add_argument( '--fid_model_name', type=str, default='inception_v3', choices=['inception_v3', 'clip_vit_b_32'], help='Which embedding network to use for computing FID') parser.add_argument( '--make_fid_stats', type=str2bool, default=True, help='Whether to compute FID stats for the private samples') parser.add_argument( '--data_loading_batch_size', type=int, default=100, help='Batch size for loading private samples') parser.add_argument( '--feature_extractor_batch_size', type=int, default=500, help='Batch size for feature extraction') parser.add_argument( '--fid_batch_size', type=int, default=500, help='Batch size for computing FID') parser.add_argument( '--gen_class_cond', type=str2bool, default=False, help='Whether to generate class labels') parser.add_argument( '--initial_prompt', action='append', type=str, help='Initial prompt for image generation. It can be specified ' 'multiple times to provide a list of prompts. If the API accepts ' 'prompts, the initial samples will be generated with these ' 'prompts') parser.add_argument( '--image_size', type=str, default='1024x1024', help='Size of generated images in the format of HxW') args, api_args = parser.parse_known_args() args.num_samples_schedule = list(map( int, args.num_samples_schedule.split(','))) variation_degree_type = (float if '.' in args.variation_degree_schedule else int) args.variation_degree_schedule = list(map( variation_degree_type, args.variation_degree_schedule.split(','))) if len(args.num_samples_schedule) != len(args.variation_degree_schedule): raise ValueError('The length of num_samples_schedule and ' 'variation_degree_schedule should be the same') api_class = get_api_class_from_name(args.api) api = api_class.

from_command_line_args(api_args)

return args, api def log_samples(samples, additional_info, folder, plot_images): if not os.path.exists(folder): os.makedirs(folder) np.savez( os.path.join(folder, 'samples.npz'), samples=samples, additional_info=additional_info) if plot_images: for i in range(samples.shape[0]): imageio.imwrite(os.path.join(folder, f'{i}.png'), samples[i]) def load_samples(path): data = np.load(path) samples = data['samples'] additional_info = data['additional_info'] return samples, additional_info def log_count(count, clean_count, path): dirname = os.path.dirname(path) if not os.path.exists(dirname): os.makedirs(dirname) np.savez(path, count=count, clean_count=clean_count) def round_to_uint8(image): return np.around(np.clip(image, a_min=0, a_max=255)).astype(np.uint8) def visualize(samples, packed_samples, count, folder, suffix=''): if not os.path.exists(folder): os.makedirs(folder) samples = samples.transpose((0, 3, 1, 2)) packed_samples = packed_samples.transpose((0, 1, 4, 2, 3)) ids = np.argsort(count)[::-1][:5] print(count[ids]) vis_samples = [] for i in range(len(ids)): vis_samples.append(samples[ids[i]]) for j in range(packed_samples.shape[1]): vis_samples.append(packed_samples[ids[i]][j]) vis_samples = np.stack(vis_samples) vis_samples = make_grid( torch.Tensor(vis_samples), nrow=packed_samples.shape[1] + 1).numpy().transpose((1, 2, 0)) vis_samples = round_to_uint8(vis_samples) imageio.imsave( os.path.join(folder, f'visualize_top_{suffix}.png'), vis_samples) ids = np.argsort(count)[:5] print(count[ids]) vis_samples = [] for i in range(len(ids)): vis_samples.append(samples[ids[i]]) for j in range(packed_samples.shape[1]): vis_samples.append(packed_samples[ids[i]][j]) vis_samples = np.stack(vis_samples) vis_samples = make_grid( torch.Tensor(vis_samples), nrow=packed_samples.shape[1] + 1).numpy().transpose((1, 2, 0)) vis_samples = round_to_uint8(vis_samples) imageio.imsave( os.path.join(folder, f'visualize_bottom_{suffix}.png'), vis_samples) def log_fid(folder, fid, t): with open(os.path.join(folder, 'fid.csv'), 'a') as f: f.write(f'{t} {fid}\n') def main(): args, api = parse_args() if os.path.exists(args.result_folder): raise RuntimeError(f'{args.result_folder} exists') os.makedirs(args.result_folder) setup_logging(os.path.join(args.result_folder, 'log.log')) logging.info(f'config: {args}') logging.info(f'API config: {api.args}') all_private_samples, all_private_labels = load_data( data_dir=args.data_folder, batch_size=args.data_loading_batch_size, image_size=args.private_image_size, class_cond=args.gen_class_cond, num_private_samples=args.num_private_samples) private_classes = list(sorted(set(list(all_private_labels)))) private_num_classes = len(private_classes) logging.info(f'Private_num_classes: {private_num_classes}') logging.info('Extracting features') all_private_features = extract_features( data=all_private_samples, tmp_folder=args.tmp_folder, model_name=args.feature_extractor, res=args.private_image_size, batch_size=args.feature_extractor_batch_size) logging.info(f'all_private_features.shape: {all_private_features.shape}') if args.make_fid_stats: logging.info('Computing FID stats') make_fid_stats( samples=all_private_samples, dataset=args.fid_dataset_name, dataset_res=args.private_image_size, dataset_split=args.fid_dataset_split, tmp_folder=args.tmp_folder, model_name=args.fid_model_name, batch_size=args.fid_batch_size) # Generating initial samples. if args.data_checkpoint_path != '': logging.info( f'Loading data checkpoint from {args.data_checkpoint_path}') samples, additional_info = load_samples(args.data_checkpoint_path) if args.data_checkpoint_step < 0: raise ValueError('data_checkpoint_step should be >= 0') start_t = args.data_checkpoint_step + 1 else: logging.info('Generating initial samples') samples, additional_info = api.image_random_sampling( prompts=args.initial_prompt, num_samples=args.num_samples_schedule[0], size=args.image_size) log_samples( samples=samples, additional_info=additional_info, folder=f'{args.result_folder}/{0}', plot_images=args.plot_images) if args.data_checkpoint_step >= 0: logging.info('Ignoring data_checkpoint_step') start_t = 1 if args.compute_fid: logging.info('Computing FID') fid = compute_fid( samples=samples, tmp_folder=args.tmp_folder, num_fid_samples=args.num_fid_samples, dataset_res=args.private_image_size, dataset=args.fid_dataset_name, dataset_split=args.fid_dataset_split, model_name=args.fid_model_name, batch_size=args.fid_batch_size) logging.info(f'fid={fid}') log_fid(args.result_folder, fid, 0) for t in range(start_t, len(args.num_samples_schedule)): logging.info(f't={t}') assert samples.shape[0] % private_num_classes == 0 num_samples_per_class = samples.shape[0] // private_num_classes if args.lookahead_degree == 0: packed_samples = np.expand_dims(samples, axis=1) else: logging.info('Running image variation') packed_samples = api.image_variation( images=samples, additional_info=additional_info, num_variations_per_image=args.lookahead_degree, size=args.image_size, variation_degree=args.variation_degree_schedule[t]) packed_features = [] logging.info('Running feature extraction') for i in range(packed_samples.shape[1]): sub_packed_features = extract_features( data=packed_samples[:, i], tmp_folder=args.tmp_folder, model_name=args.feature_extractor, res=args.private_image_size, batch_size=args.feature_extractor_batch_size) logging.info( f'sub_packed_features.shape: {sub_packed_features.shape}') packed_features.append(sub_packed_features) packed_features = np.mean(packed_features, axis=0) logging.info('Computing histogram') count = [] for class_i, class_ in enumerate(private_classes): sub_count, sub_clean_count = dp_nn_histogram( public_features=packed_features[ num_samples_per_class * class_i: num_samples_per_class * (class_i + 1)], private_features=all_private_features[ all_private_labels == class_], noise_multiplier=args.noise_multiplier, num_nearest_neighbor=args.num_nearest_neighbor, mode=args.nn_mode, threshold=args.count_threshold) log_count( sub_count, sub_clean_count, f'{args.result_folder}/{t}/count_class{class_}.npz') count.append(sub_count) count = np.concatenate(count) for class_i, class_ in enumerate(private_classes): visualize( samples=samples[ num_samples_per_class * class_i: num_samples_per_class * (class_i + 1)], packed_samples=packed_samples[ num_samples_per_class * class_i: num_samples_per_class * (class_i + 1)], count=count[ num_samples_per_class * class_i: num_samples_per_class * (class_i + 1)], folder=f'{args.result_folder}/{t}', suffix=f'class{class_}') logging.info('Generating new indices') assert args.num_samples_schedule[t] % private_num_classes == 0 new_num_samples_per_class = ( args.num_samples_schedule[t] // private_num_classes) new_indices = [] for class_i in private_classes: sub_count = count[ num_samples_per_class * class_i: num_samples_per_class * (class_i + 1)] sub_new_indices = np.random.choice( np.arange(num_samples_per_class * class_i, num_samples_per_class * (class_i + 1)), size=new_num_samples_per_class, p=sub_count / np.sum(sub_count)) new_indices.append(sub_new_indices) new_indices = np.concatenate(new_indices) new_samples = samples[new_indices] new_additional_info = additional_info[new_indices] logging.info('Generating new samples') new_new_samples = api.image_variation( images=new_samples, additional_info=new_additional_info, num_variations_per_image=1, size=args.image_size, variation_degree=args.variation_degree_schedule[t]) new_new_samples = np.squeeze(new_new_samples, axis=1) new_new_additional_info = new_additional_info if args.compute_fid: logging.info('Computing FID') new_new_fid = compute_fid( new_new_samples, tmp_folder=args.tmp_folder, num_fid_samples=args.num_fid_samples, dataset_res=args.private_image_size, dataset=args.fid_dataset_name, dataset_split=args.fid_dataset_split, model_name=args.fid_model_name, batch_size=args.fid_batch_size) logging.info(f'fid={new_new_fid}') log_fid(args.result_folder, new_new_fid, t) samples = new_new_samples additional_info = new_new_additional_info log_samples( samples=samples, additional_info=additional_info, folder=f'{args.result_folder}/{t}', plot_images=args.plot_images) if __name__ == '__main__': main()

main.py

microsoft-DPSDA-79f0868

python

from_command_line_args(api_args)

import torch import torchvision.transforms as T from torch.utils.data import DataLoader import numpy as np import logging from .dataset import ImageDataset def load_data(data_dir, batch_size, image_size, class_cond, num_private_samples): transform = T.Compose([ T.Resize(image_size), T.CenterCrop(image_size), T.ToTensor() ]) dataset = ImageDataset(folder=data_dir, transform=transform) loader = DataLoader(dataset, batch_size, shuffle=False, num_workers=10, pin_memory=torch.cuda.is_available(), drop_last=False) all_samples = [] all_labels = [] cnt = 0 for batch, cond in loader: all_samples.append(batch.cpu().numpy()) if class_cond: all_labels.append(cond.cpu().numpy()) cnt += batch.shape[0] logging.

info(f'loaded {cnt} samples')

if batch.shape[0] < batch_size: logging.info('WARNING: containing incomplete batch. Please check' 'num_private_samples') if cnt >= num_private_samples: break all_samples = np.concatenate(all_samples, axis=0) all_samples = all_samples[:num_private_samples] all_samples = np.around(np.clip( all_samples * 255, a_min=0, a_max=255)).astype(np.uint8) all_samples = np.transpose(all_samples, (0, 2, 3, 1)) if class_cond: all_labels = np.concatenate(all_labels, axis=0) all_labels = all_labels[:num_private_samples] else: all_labels = np.zeros(shape=all_samples.shape[0], dtype=np.int64) return all_samples, all_labels

dpsda/data_loader.py

microsoft-DPSDA-79f0868

python

info(f'loaded {cnt} samples')

import openai import numpy as np from imageio.v2 import imread import requests from io import BytesIO from PIL import Image from tqdm import tqdm import os import logging from .api import API from tenacity import ( retry, retry_if_not_exception_type, stop_after_attempt, wait_random_exponential, ) class DALLEAPI(API): def __init__(self, *args, **kwargs): super().__init__(*args, **kwargs) self._openai_api_key = os.environ['OPENAI_API_KEY'] openai.api_key = self._openai_api_key @staticmethod def command_line_parser(): return super(DALLEAPI, DALLEAPI).command_line_parser() def image_random_sampling(self, num_samples, size, prompts): """ Generates a specified number of random image samples based on a given prompt and size using OpenAI's Image API. Args: num_samples (int): The number of image samples to generate. size (str, optional): The size of the generated images in the format "widthxheight". Options include "256x256", "512x512", and "1024x1024". prompts (List[str]): The text prompts to generate images from. Each promot will be used to generate num_samples/len(prompts) number of samples. Returns: numpy.ndarray: A numpy array of shape [num_samples x width x height x channels] with type np.uint8 containing the generated image samples as numpy arrays. numpy.ndarray: A numpy array with length num_samples containing prompts for each image. """ max_batch_size = 10 images = [] return_prompts = [] for prompt_i, prompt in enumerate(prompts): num_samples_for_prompt = (num_samples + prompt_i) // len(prompts) num_iterations = int(np.ceil( float(num_samples_for_prompt) / max_batch_size)) for iteration in tqdm(range(num_iterations)): batch_size = min( max_batch_size, num_samples_for_prompt - iteration * max_batch_size) images.append(_dalle2_random_sampling( prompt=prompt, num_samples=batch_size, size=size)) return_prompts.extend([prompt] * num_samples_for_prompt) return np.concatenate(images, axis=0), np.array(return_prompts) def image_variation(self, images, additional_info, num_variations_per_image, size, variation_degree=None): """ Generates a specified number of variations for each image in the input array using OpenAI's Image Variation API. Args: images (numpy.ndarray): A numpy array of shape [num_samples x width x height x channels] containing the input images as numpy arrays of type uint8. additional_info (numpy.ndarray): A numpy array with the first dimension equaling to num_samples containing prompts provided by image_random_sampling. num_variations_per_image (int): The number of variations to generate for each input image. size (str): The size of the generated image variations in the format "widthxheight". Options include "256x256", "512x512", and "1024x1024". Returns: numpy.ndarray: A numpy array of shape [num_samples x num_variations_per_image x width x height x channels] containing the generated image variations as numpy arrays of type uint8. """ if variation_degree is not None: logging.

info(f'Ignoring variation degree {variation_degree}')

if additional_info is not None: logging.info('Ignoring additional info') max_batch_size = 10 variations = [] for iteration in tqdm(range(int(np.ceil( float(num_variations_per_image) / max_batch_size)))): batch_size = min( max_batch_size, num_variations_per_image - iteration * max_batch_size) sub_variations = [] for image in tqdm(images, leave=False): sub_variations.append(_dalle2_image_variation( image=image, num_variations_per_image=batch_size, size=size)) sub_variations = np.array(sub_variations, dtype=np.uint8) variations.append(sub_variations) return np.concatenate(variations, axis=1) # Decorator is retry logic to get around rate limits. COMMENT OUT WHEN # DEBUGGING! Otherwise it will constantly retry on errors. @retry( retry=retry_if_not_exception_type(openai.error.InvalidRequestError), wait=wait_random_exponential(min=1, max=60), stop=stop_after_attempt(15), ) def _dalle2_random_sampling(prompt, num_samples=10, size="1024x1024"): """ Generates a specified number of random image samples based on a given prompt and size using OpenAI's Image API. Args: prompt (str): The text prompt to generate images from. num_samples (int, optional): The number of image samples to generate. Default is 10. Max of 10. size (str, optional): The size of the generated images in the format "widthxheight". Default is "1024x1024". Options include "256x256", "512x512", and "1024x1024". Returns: numpy.ndarray: A numpy array of shape [num_samples x image size x image size x channels] containing the generated image samples as numpy arrays. """ response = openai.Image.create(prompt=prompt, n=num_samples, size=size) image_urls = [image["url"] for image in response["data"]] images = [ imread(BytesIO(requests.get(url).content)) for url in image_urls ] # Store as np array return np.array(images) @retry( retry=retry_if_not_exception_type(openai.error.InvalidRequestError), wait=wait_random_exponential(min=1, max=60), stop=stop_after_attempt(15), ) def _dalle2_image_variation(image, num_variations_per_image, size="1024x1024"): """ Generates a specified number of variations for one image in the input array using OpenAI's Image Variation API. Args: images (numpy.ndarray): A numpy array of shape [channels x image size x image size] containing the input images as numpy arrays of type uint8. num_variations_per_image (int): The number of variations to generate for each input image. size (str, optional): The size of the generated image variations in the format "widthxheight". Default is "1024x1024". Options include "256x256", "512x512", and "1024x1024". Returns: numpy.ndarray: A numpy array of shape [ num_variations_per_image x image size x image size x channels] containing the generated image variations as numpy arrays of type uint8. """ im = Image.fromarray(image) with BytesIO() as buffer: im.save(buffer, format="PNG") buffer.seek(0) response = openai.Image.create_variation( image=buffer, n=num_variations_per_image, size=size ) image_urls = [image["url"] for image in response["data"]] image_variations = [ imread(BytesIO(requests.get(url).content)) for url in image_urls ] return np.array(image_variations, dtype=np.uint8)

apis/dalle_api.py

microsoft-DPSDA-79f0868

python

info(f'Ignoring variation degree {variation_degree}')

import re from itertools import chain from multiprocessing import Pool from pathlib import Path from urllib.request import urlretrieve from src.config import Config from . import version_finder from .asset_bundle import AssetBundle from .cysp2skel import Cysp2Skel from .files import BundleFile from .manifests import AssetManifest, Manifest, MovieManifest, SoundManifest from .mdb import MDB from .protocols import Extractable class Dataminer: _mdb: MDB | None = None _cysp2skel: Cysp2Skel | None = None __slots__ = ( "_asset_manifest", "_sound_manifest", "_movie_manifest", ) def __init__(self, *, version: int | None = None) -> None: if version is None: version = version_finder.

get_latest_version(Config.host)

self._asset_manifest: AssetManifest = AssetManifest(version) self._sound_manifest: SoundManifest = SoundManifest(version) self._movie_manifest: MovieManifest = MovieManifest(version) @staticmethod def _pool_manifest_files(data: tuple[Manifest, str]) -> list[AssetBundle]: manifest, match = data ret = manifest.get_files(match) return ret @staticmethod def _pool_bundle_files(data: tuple[AssetBundle, str]) -> list[BundleFile]: assetbundle, match = data return assetbundle.get_files(match) @staticmethod def _extract_file(file: Extractable): file.extract() @staticmethod def download_mdb(mdb_name="master.db") -> str: return urlretrieve( "https://github.com/lskyset/nozomi-cb-data/raw/main/master.db", mdb_name, )[0] @property def mdb(self) -> MDB: if Dataminer._mdb is None: Dataminer._mdb = MDB(Dataminer.download_mdb()) return Dataminer._mdb @property def cysp2skel(self) -> Cysp2Skel: if Dataminer._cysp2skel is None: Dataminer._cysp2skel = Cysp2Skel("a/spine/unitanimation", self.mdb) return Dataminer._cysp2skel def get_manifests( self, match: str = "" ) -> list[Manifest | SoundManifest | MovieManifest]: manifests: list[SoundManifest | MovieManifest] = [] tmp: list[SoundManifest | MovieManifest] = [ self._sound_manifest, self._movie_manifest, ] for manifest in tmp: if re.search(match, manifest.name): manifests.append(manifest) return self._asset_manifest.get_files(match) + manifests def datamine( self, *, manifest_filter: str, assetbundle_filter: str, file_filter: str, ): manifests: list[Manifest | SoundManifest | MovieManifest] manifests = self.get_manifests(manifest_filter) with Pool() as p: assetbundles: chain[AssetBundle] = chain( *p.imap( self._pool_manifest_files, [ (manifest, assetbundle_filter) for manifest in manifests if type(manifest) == Manifest ], ) ) files: chain[Extractable] = chain( *p.imap( self._pool_bundle_files, [(assetbndl, file_filter) for assetbndl in assetbundles], ), chain( *[ manifest.get_files(file_filter) for manifest in manifests if type(manifest) == SoundManifest or type(manifest) == MovieManifest ] ), ) list(p.imap(self._extract_file, files)) def get_skel(self, unit_id: int): if (buffer := self.cysp2skel.get_skeleton_buffer(unit_id)) is None: return print(f"Could not find {unit_id=}") path = Path(f"a/spine/sdnormal/spine_{unit_id}/{unit_id}.skel") path.parent.mkdir(parents=True, exist_ok=True) with path.open("wb") as f: f.write(buffer.read()) print(f"EX {path.absolute()}")

src/dataminer.py

lskyset-priconne-asset-extractor-3d54812

python

get_latest_version(Config.host)

from __future__ import annotations import json from pathlib import Path from typing import TYPE_CHECKING, Any, cast import UnityPy # type: ignore[import] from src.story_deserializer import deserialize_story from ..config import BundleType, Config from ..protocols import Extractable if TYPE_CHECKING: from ..asset_bundle import AssetBundle class BundleFile(Extractable): __slots__ = ( "_parent_path", "_object", "_type", "_data", "image", "script", "container", "_asset_name", ) def __init__( self, pcr_file: AssetBundle, obj: UnityPy.environment.ObjectReader ) -> None: self._parent_path: Path = pcr_file.path.parent.parent self._object: UnityPy.environment.ObjectReader | None = obj self._type: BundleType = BundleType(obj.type.name) self._data: Any = None self.image: Any = None self.script: Any = None self.container: str | None = None self._asset_name: str | None = None # for Protocol self._name = self.name self._path = self.path self._size = self.size @property def parent_path(self) -> Path: return self._parent_path @property def type(self) -> BundleType: return self._type @property def data(self) -> Any: if self._data is None and self._object: self._data = self._object.read() self._object = None return self._data @property def extention(self) -> str: if self.is_image: return Config().image_format if self.is_text: if "storydata" in self._asset_name: return ".json" return ".txt" return "" @property def name(self) -> str: if self._asset_name is None and self.data: self._asset_name = self.data.name if self._asset_name: return self._asset_name + self.extention else: raise Exception("Name cannot be None.") @property def size(self) -> int: return 0 @property def path(self) -> Path: if self.data: self.container = cast(str | None, self.data.container) if self.container: str_path = self.container.replace( "assets/_elementsresources/resources", "a" ) return Path(str_path).parent / self.name else: return self._parent_path / self.name @property def is_image(self) -> bool: return self.type in [BundleType.

TEXTURE_2D, BundleType.Sprite]

@property def is_text(self) -> bool: return self.type == BundleType.TEXT_ASSET def extract(self) -> None: if self.path.exists(): return self.path.parent.mkdir(parents=True, exist_ok=True) self.process_data() if self.image: self._extract_image() elif self.script: self._extract_text() print(f"EX {self.name} -> {self.path.absolute()}") def _extract_image(self): self.image.save(self.path, lossless=True) def _extract_text(self): if "storydata" in self.name: with self.path.open("w", encoding="utf-8") as f: json.dump( deserialize_story(self.script), f, indent=4, ensure_ascii=False, ) else: self.path.write_bytes(self.script) def process_data(self) -> None: if self._data is None: return if self.is_image: self.image = self.data.image elif self.is_text: self.script = bytes(self.data.script) self._asset_name = self.data.name self.container = self.data.container self._data = None def __getstate__(self) -> tuple[None, dict]: self.process_data() slot_dict: dict[str, Any] = {} for attribute in self.__slots__: slot_dict[attribute] = getattr(self, attribute) return (None, slot_dict)

src/files/bundle_file.py

lskyset-priconne-asset-extractor-3d54812

python

TEXTURE_2D, BundleType.Sprite]

from abc import ABCMeta from pathlib import Path from typing import Generic, TypeVar from urllib.request import urlretrieve from ..config import Config, ManifestType from ..protocols import Downloadable from .abstract_file import AbstractFile T = TypeVar("T") class AbstractManifestFile( AbstractFile, Downloadable, Generic[T], metaclass=ABCMeta, ): def __init__( self, path: Path | str, hash_: str, type_: T, size: int = 0, version: int = 0, ) -> None: AbstractFile.__init__(self, path, type_, size) self._hash = hash_ self._version = version @property def url(self) -> str: if type(self._type) == ManifestType: endpoint = f"{self._type.value % (self._version,self.

name)}"

else: endpoint = f"{self._type.value}/{self._hash[:2]}/{self._hash}" return f"https://{Config.host.value}/{endpoint}" def download(self) -> None: if self.path.exists(): if self.path.stat().st_size == self.size: return self.path.parent.mkdir(parents=True, exist_ok=True) urlretrieve(self.url, self.path) print(f"DL {self.url} -> {self.path.absolute()}")

src/abc/abstract_manifest_file.py

lskyset-priconne-asset-extractor-3d54812

python

name)}"

from abc import ABCMeta from pathlib import Path from typing import Generic, TypeVar from urllib.request import urlretrieve from ..config import Config, ManifestType from ..protocols import Downloadable from .abstract_file import AbstractFile T = TypeVar("T") class AbstractManifestFile( AbstractFile, Downloadable, Generic[T], metaclass=ABCMeta, ): def __init__( self, path: Path | str, hash_: str, type_: T, size: int = 0, version: int = 0, ) -> None: AbstractFile.__init__(self, path, type_, size) self._hash = hash_ self._version = version @property def url(self) -> str: if type(self.

_type) == ManifestType:

endpoint = f"{self._type.value % (self._version,self.name)}" else: endpoint = f"{self._type.value}/{self._hash[:2]}/{self._hash}" return f"https://{Config.host.value}/{endpoint}" def download(self) -> None: if self.path.exists(): if self.path.stat().st_size == self.size: return self.path.parent.mkdir(parents=True, exist_ok=True) urlretrieve(self.url, self.path) print(f"DL {self.url} -> {self.path.absolute()}")

src/abc/abstract_manifest_file.py

lskyset-priconne-asset-extractor-3d54812

python

_type) == ManifestType:

import re from itertools import chain from multiprocessing import Pool from pathlib import Path from urllib.request import urlretrieve from src.config import Config from . import version_finder from .asset_bundle import AssetBundle from .cysp2skel import Cysp2Skel from .files import BundleFile from .manifests import AssetManifest, Manifest, MovieManifest, SoundManifest from .mdb import MDB from .protocols import Extractable class Dataminer: _mdb: MDB | None = None _cysp2skel: Cysp2Skel | None = None __slots__ = ( "_asset_manifest", "_sound_manifest", "_movie_manifest", ) def __init__(self, *, version: int | None = None) -> None: if version is None: version = version_finder.get_latest_version(Config.host) self._asset_manifest: AssetManifest = AssetManifest(version) self._sound_manifest: SoundManifest = SoundManifest(version) self._movie_manifest: MovieManifest = MovieManifest(version) @staticmethod def _pool_manifest_files(data: tuple[Manifest, str]) -> list[AssetBundle]: manifest, match = data ret = manifest.get_files(match) return ret @staticmethod def _pool_bundle_files(data: tuple[AssetBundle, str]) -> list[BundleFile]: assetbundle, match = data return assetbundle.get_files(match) @staticmethod def _extract_file(file: Extractable): file.extract() @staticmethod def download_mdb(mdb_name="master.db") -> str: return urlretrieve( "https://github.com/lskyset/nozomi-cb-data/raw/main/master.db", mdb_name, )[0] @property def mdb(self) -> MDB: if Dataminer._mdb is None: Dataminer._mdb = MDB(Dataminer.download_mdb()) return Dataminer._mdb @property def cysp2skel(self) -> Cysp2Skel: if Dataminer._cysp2skel is None: Dataminer._cysp2skel = Cysp2Skel("a/spine/unitanimation", self.mdb) return Dataminer._cysp2skel def get_manifests( self, match: str = "" ) -> list[Manifest | SoundManifest | MovieManifest]: manifests: list[SoundManifest | MovieManifest] = [] tmp: list[SoundManifest | MovieManifest] = [ self._sound_manifest, self._movie_manifest, ] for manifest in tmp: if re.search(match, manifest.name): manifests.append(manifest) return self._asset_manifest.

get_files(match) + manifests

def datamine( self, *, manifest_filter: str, assetbundle_filter: str, file_filter: str, ): manifests: list[Manifest | SoundManifest | MovieManifest] manifests = self.get_manifests(manifest_filter) with Pool() as p: assetbundles: chain[AssetBundle] = chain( *p.imap( self._pool_manifest_files, [ (manifest, assetbundle_filter) for manifest in manifests if type(manifest) == Manifest ], ) ) files: chain[Extractable] = chain( *p.imap( self._pool_bundle_files, [(assetbndl, file_filter) for assetbndl in assetbundles], ), chain( *[ manifest.get_files(file_filter) for manifest in manifests if type(manifest) == SoundManifest or type(manifest) == MovieManifest ] ), ) list(p.imap(self._extract_file, files)) def get_skel(self, unit_id: int): if (buffer := self.cysp2skel.get_skeleton_buffer(unit_id)) is None: return print(f"Could not find {unit_id=}") path = Path(f"a/spine/sdnormal/spine_{unit_id}/{unit_id}.skel") path.parent.mkdir(parents=True, exist_ok=True) with path.open("wb") as f: f.write(buffer.read()) print(f"EX {path.absolute()}")

src/dataminer.py

lskyset-priconne-asset-extractor-3d54812

python

get_files(match) + manifests

from typing import List, Dict, Optional import datetime from llm_oracle.markets.base import Market, MarketEvent from llm_oracle import text_utils, processing_utils class CustomEvent(MarketEvent): def __init__(self, question: str, close_date: datetime.datetime, prior: Optional[float] = 0.5): self.question = question self.close_date = close_date self.prior = prior def to_text(self, *args, **kwargs) -> str: text = ["Prediction Market"] text.append(f'Will the following statement resolve to yes by the close date: "{self.question}"') end_date = self.get_end_date() if end_date is not None: text.append(f"close_date: {text_utils.future_date_to_string(self.get_end_date())}") text.append(text_utils.world_state_to_string()) return "\n".join(text) def get_title(self) -> str: return self.question def get_end_date(self) -> datetime.datetime: return self.close_date def get_market_probability(self) -> float: return self.prior def get_universal_id(self) -> str: return "custom:" + processing_utils.

hash_str(repr([self.question, self.close_date]))

def to_dict(self) -> Dict: return {"question": self.question, "close_date": self.close_date} def is_active(self) -> bool: return True def get_market_result(self) -> Optional[float]: raise NotImplementedError() class CustomMarket(Market): def __init__(self, events: List[MarketEvent]): self.events = events def search(self, *args, **kwargs) -> List[Dict]: return [event.to_dict() for event in self.events] def get_event(self, event_id: str) -> CustomEvent: return self.events[int(event_id)]

llm_oracle/markets/custom.py

sshh12-llm_oracle-79c8b59

python

hash_str(repr([self.question, self.close_date]))

""" Simulate CDM data for testing purposes. Persons are simulated to have hidden disease states. Some states are fixed at the start, to simulate fixed traits such as genetics, while the remaining states are dynamic. The probability to enter a dynamic disease state depending on the current disease states in a non-linear way (i.e. using interactions between states). Concepts are simulated to be observed with probabilities depending on the current disease states, again in a non-linear way. Concepts imply visits, and visits in return increase the probability of observing concepts, thus causing concepts to cluster in time. The simulated data is saved in the CDM format. To generate patient-level predicition problems with a gold standard, the model is executed. For each person, an index date is randomly selected, and Monte-Carlo simulations are performed to simulate the future. """ import cProfile import configparser import json import logging import multiprocessing import os import sys from typing import List from dataclasses import dataclass import numpy as np import tqdm as tqdm import cdm_data import utils.logger as logger LOGGER_FILE_NAME = "_simulation_log.txt" QUIET = 0 CHATTY = 1 OBSESSIVE = 2 JSON_FILE_NAME = "_simulation.json" PRETRAINING_FOLDER = "pretraining" TRAIN_FOLDER = "train" TEST_FOLDER = "test" STATE_TRANSITION_INTERCEPT = -6 # Log probability intercept of transitioning to a new state. CONCEPT_OBSERVATION_INTERCEPT = -8 # Log probability intercept of observing a concept. AGE_INDEX = -2 GENDER_INDEX = -1 def logistic(x): return 1 / (1 + np.exp(-x)) @dataclass class SimulationSettings: dynamic_state_count: int = 10 fixed_state_count: int = 5 concept_count: int = 100 serious_concept_count: int = 10 visit_multiplier: int = 2 days_to_simulate: int = 365 * 2 @dataclass class SimulationTask: partition_count: int @dataclass class PreTrainingTask(SimulationTask): person_count: int @dataclass class PredictionTask(SimulationTask): train_person_count: int test_person_count: int prediction_window: int def _simulate_date_of_birth(current_date: np.datetime64, age_indicator: int) -> tuple[int, int, int]: """ Simulate a date of birth for a person. Args: current_date: The current date. age_indicator: An indicator of the age of the person. Returns: A tuple of the year, month and day of birth. """ if age_indicator == 0: # Simulate a date of birth for a child: birth_date = current_date - np.random.randint(0, 365 * 18) else: # Simulate a date of birth for an adult: birth_date = current_date - np.random.randint(365 * 18, 365 * 100) birth_date = np.datetime64(birth_date, 'D') return birth_date.astype('datetime64[Y]').astype(int) + 1970, \ birth_date.astype('datetime64[M]').astype(int) % 12 + 1, \ birth_date.astype('datetime64[D]').astype(int) % 31 + 1 class Simulator: # Note: Tried using scipy.sparse.csr_matrix, but it was 100 times slower than using a dense matrix. def __init__(self, root_folder: str, settings: SimulationSettings = None, json_file_name: str = None, log_verbosity: int = QUIET, max_cores: int = 1): self._root_folder = root_folder if not os.path.exists(root_folder): os.makedirs(root_folder) self._profile = False self._log_verbosity = log_verbosity self._max_cores = max_cores self._task = SimulationTask(0) self._configure_logger() if settings is None: self._init_from_json(json_file_name) else: self._init_from_settings(settings) self.save_to_json(os.path.join(self._root_folder, JSON_FILE_NAME)) def _init_from_json(self, json_file_name: str): logging.info("Loading simulation configuration from %s", json_file_name) with open(json_file_name, "r") as f: loaded = json.load(f) self._settings = SimulationSettings(**loaded["simulation_settings"]) self._state_count = loaded["state_count"] self._concept_ids = np.array(loaded["concept_ids"]) self._serious_concept_idx = np.array(loaded["serious_concept_idx"]) self._initial_state_probabilities = np.array(loaded["initial_state_probabilities"]) self._dynamic_state_entry_coefs = [np.array(matrix) for matrix in loaded["dynamic_state_entry_coefs"]] self._dynamic_state_exit_probabilities = np.array(loaded["dynamic_state_exit_probabilities"]) self._concept_emmision_coefs = [np.array(matrix) for matrix in loaded["concept_emmision_coefs"]] def _init_from_settings(self, settings: SimulationSettings): self._settings = settings self._state_count = settings.dynamic_state_count + settings.fixed_state_count + 2 # + 2 for age and sex self._concept_ids = np.arange(settings.concept_count) + 1000000 # Initialize probabilities and coefficients: self._initial_state_probabilities = np.concatenate(( np.random.beta(size=settings.dynamic_state_count, a=1, b=4) / settings.dynamic_state_count, np.random.uniform(size=settings.fixed_state_count + 2) )) # Note: really only need half of these matrices to be filled, because interaction matrix will be symmetrical # over diagonal, but it's easier to just fill them completely: self._dynamic_state_entry_coefs = [] for i in range(settings.dynamic_state_count): matrix = np.zeros(self._state_count * self._state_count) non_zero_count = round(len(matrix) / self._state_count) matrix[np.random.choice(len(matrix), size=non_zero_count, replace=False)] = \ np.random.laplace(loc=0, scale=0.1, size=non_zero_count) self._dynamic_state_entry_coefs.append(matrix.reshape(self._state_count, self._state_count)) self._dynamic_state_exit_probabilities = \ np.random.beta(size=settings.dynamic_state_count, a=0.2, b=3) / settings.dynamic_state_count self._concept_emmision_coefs = [] for i in range(settings.concept_count): matrix = np.zeros(self._state_count * self._state_count) non_zero_count = round(len(matrix) / np.sqrt(self._settings.concept_count)) matrix[np.random.choice(len(matrix), size=non_zero_count, replace=False)] = \ np.random.laplace(loc=0, scale=0.5, size=non_zero_count) self._concept_emmision_coefs.append(matrix.reshape(self._state_count, self._state_count)) self._serious_concept_idx = np.zeros(settings.concept_count, dtype=bool) self._serious_concept_idx[np.random.choice(settings.concept_count, size=settings.serious_concept_count, replace=False)] = True def set_profile(self, profile: bool): self._profile = profile def get_profile(self): return self._profile def _configure_logger(self): logger.

create_logger(os.path.join(self._root_folder, LOGGER_FILE_NAME))

def _simulate_person(self, person_id: int): if isinstance(self._task, PredictionTask): prediction_labels = np.zeros(self._settings.concept_count, dtype=bool) # Currently just using full prediction window, but could change to make index day random: index_day = self._settings.days_to_simulate - self._task.prediction_window is_prediction = True else: prediction_labels = None index_day = 0 is_prediction = False start_date = np.datetime64("2010-01-01") + np.random.randint(0, 365 * 10) state = np.random.binomial(n=1, p=self._initial_state_probabilities) self._cdm_data.add_observation_period(person_id=person_id, observation_period_id=person_id, observation_period_start_date=start_date, observation_period_end_date=start_date + self._settings.days_to_simulate) year_of_birth, month_of_birth, day_of_birth = _simulate_date_of_birth(start_date, state[AGE_INDEX]) gender_concept_id = 8507 if state[GENDER_INDEX] == 0 else 8532 self._cdm_data.add_person(person_id=person_id, year_of_birth=year_of_birth, month_of_birth=month_of_birth, day_of_birth=day_of_birth, gender_concept_id=gender_concept_id) visit_occurrence_id = person_id * 100000 for t in range(self._settings.days_to_simulate): if self._log_verbosity == OBSESSIVE: logging.debug("Person: %s, Day: %s, State: %s", person_id, t, state) state_interaction_matrix = np.outer(state, state) # Roll dice to change state: flip_to_one = logistic( np.sum(np.asarray(self._dynamic_state_entry_coefs) * state_interaction_matrix[np.newaxis, :, :], axis=(1, 2)) - 6) * (state[:self._settings.dynamic_state_count] == 0) flip_to_zero = (self._dynamic_state_exit_probabilities * (state[:self._settings.dynamic_state_count] == 1)) state_flip_probabilities = flip_to_one + flip_to_zero state[:self._settings.dynamic_state_count] = np.logical_xor(state[:self._settings.dynamic_state_count], np.random.binomial(n=1, p=state_flip_probabilities)) # Roll dice to observe a concept: concept_probabilities = logistic(CONCEPT_OBSERVATION_INTERCEPT + np.sum( np.asarray(self._concept_emmision_coefs) * state_interaction_matrix[np.newaxis, :, :], axis=(1, 2))) admission_concept_idx = (np.random.binomial(n=1, p=concept_probabilities) != 0) visit = admission_concept_idx.any() if visit: # Roll dice again to observe a concept (to simulate the fact that some concepts are more likely to be # observed during a visit): observed_concept_idx = admission_concept_idx | (np.random.binomial(n=self._settings.visit_multiplier, p=concept_probabilities) != 0) if is_prediction and t > index_day: prediction_labels = prediction_labels | observed_concept_idx else: concept_ids = self._concept_ids[observed_concept_idx] for concept_id in concept_ids: self._cdm_data.add_condition_occurrence(person_id=person_id, condition_start_date=start_date + t, condition_concept_id=concept_id, visit_occurrence_id=visit_occurrence_id) # If admission concept is serious, make the visit an emergency room visit, otherwise make it an # outpatient visit: if (admission_concept_idx & self._serious_concept_idx).any(): visit_concept_id = 9203 # Emergency room visit else: visit_concept_id = 9201 # Outpatient visit self._cdm_data.add_visit_occurrence(person_id=person_id, visit_start_date=start_date + t, visit_end_date=start_date + t, visit_concept_id=visit_concept_id, visit_occurrence_id=visit_occurrence_id) visit_occurrence_id += 1 if self._log_verbosity == OBSESSIVE: logging.debug("Person %s visit on day %s with concept IDs: %s", person_id, t, concept_ids) if isinstance(self._cdm_data, cdm_data.CdmDataWithLabels): for i in range(self._settings.concept_count): self._cdm_data.add_label(person_id=person_id, concept_id=self._concept_ids[i], label=prediction_labels[i]) def simulate(self, task: SimulationTask): """ Process the CDM data in the provided cdm_data_path. """ self._task = task if isinstance(task, PreTrainingTask): logging.info("Simulating data for pre-training task") output_folder = os.path.join(self._root_folder, PRETRAINING_FOLDER) if not os.path.exists(output_folder): os.makedirs(output_folder) elif isinstance(task, PredictionTask): logging.info("Simulating data for prediction task") train_folder = os.path.join(self._root_folder, TRAIN_FOLDER) if not os.path.exists(train_folder): os.makedirs(train_folder) test_folder = os.path.join(self._root_folder, TEST_FOLDER) if not os.path.exists(test_folder): os.makedirs(test_folder) else: raise ValueError("Unknown task type: %s" % type(task)) if self._profile: cProfile.runctx(statement="self._simulate()", locals={"self": self}, globals={}, filename="../stats") else: self._simulate() def _simulate(self): if self._profile: logging.info("Profiling mode enabled, running first partition in single thread") self._simulate_partition(0) elif self._max_cores == 1: # Run single thread in main thread for easier debugging: for partition_i in range(self._task.partition_count): self._simulate_partition(partition_i) else: pool = multiprocessing.get_context("spawn").Pool(processes=self._max_cores) tasks = range(self._task.partition_count) work = self._simulate_partition for _ in tqdm.tqdm(pool.imap_unordered(work, tasks), total=len(tasks)): pass pool.close() logging.info("Finished simulation") def _simulate_partition(self, partition_i: int): # This function is executed within a thread # Need to re-configure logger because we're in a thread: self._configure_logger() logging.debug("Starting partition %s of %s", partition_i, self._task.partition_count) if isinstance(self._task, PreTrainingTask): self._simulate_person_set(partition_i=partition_i, persons_per_partition=self._task.person_count // self._task.partition_count, output_folder=os.path.join(self._root_folder, PRETRAINING_FOLDER)) elif isinstance(self._task, PredictionTask): self._simulate_person_set(partition_i=partition_i, persons_per_partition=self._task.train_person_count // self._task.partition_count, output_folder=os.path.join(self._root_folder, TRAIN_FOLDER)) self._simulate_person_set(partition_i=partition_i, persons_per_partition=self._task.test_person_count // self._task.partition_count, output_folder=os.path.join(self._root_folder, TEST_FOLDER)) else: raise ValueError("Unknown task type: %s" % type(self._task)) logging.debug("Finished partition %s of %s", partition_i, self._task.partition_count) def _simulate_person_set(self, partition_i: int, persons_per_partition: int, output_folder: str): if isinstance(self._task, PredictionTask): self._cdm_data = cdm_data.CdmDataWithLabels() else: self._cdm_data = cdm_data.CdmData() for i in range(persons_per_partition * partition_i, persons_per_partition * (partition_i + 1)): self._simulate_person(person_id=i) self._cdm_data.log_statistics(partition_i=partition_i) self._cdm_data.write_to_parquet(output_folder, partition_i) def save_to_json(self, file_name: str): with open(file_name, "w") as f: to_save = { "simulation_settings": self._settings.__dict__, "state_count": self._state_count, "concept_ids": self._concept_ids.tolist(), "serious_concept_idx": self._serious_concept_idx.tolist(), "initial_state_probabilities": self._initial_state_probabilities.tolist(), "dynamic_state_exit_probabilities": self._dynamic_state_exit_probabilities.tolist(), "dynamic_state_entry_coefs": [matrix.tolist() for matrix in self._dynamic_state_entry_coefs], "concept_emmision_coefs": [matrix.tolist() for matrix in self._concept_emmision_coefs] } json.dump(to_save, f) def main(args: List[str]): config = configparser.ConfigParser() with open(args[0]) as file: # Explicitly opening file so error is thrown when not found config.read_file(file) if config["simulation"].get("json_file_name") == "": settings = SimulationSettings( dynamic_state_count=config["simulation"].getint("dynamic_state_count"), fixed_state_count=config["simulation"].getint("fixed_state_count"), concept_count=config["simulation"].getint("concept_count"), serious_concept_count=config["simulation"].getint("serious_concept_count"), visit_multiplier=config["simulation"].getint("visit_multiplier"), days_to_simulate=config["simulation"].getint("days_to_simulate")) json_file_name = None else: settings = None json_file_name = config["simulation"].get("json_file_name") config.remove_section("simulation") simulator = Simulator(root_folder=config["system"].get("root_folder"), settings=settings, json_file_name=json_file_name, log_verbosity=config["debug"].getint("log_verbosity"), max_cores=config["system"].getint("max_cores")) # Log config after initializing cdm_data_processor so logger is initialized: logger.log_config(config) if config["debug"].getboolean("profile"): simulator.set_profile(True) if config["pre-training data generation"].getboolean("generate_pre_training_data"): task = PreTrainingTask(partition_count=config["pre-training data generation"].getint("partition_count"), person_count=config["pre-training data generation"].getint("person_count")) simulator.simulate(task) if config["prediction data generation"].getboolean("generate_prediction_data"): task = PredictionTask(partition_count=config["prediction data generation"].getint("partition_count"), train_person_count=config["prediction data generation"].getint("train_person_count"), test_person_count=config["prediction data generation"].getint("test_person_count"), prediction_window=config["prediction data generation"].getint("prediction_window")) simulator.simulate(task) if __name__ == "__main__": if len(sys.argv) != 2: raise Exception("Must provide path to ini file as argument") else: main(sys.argv[1:])

simulating/simulator.py

OHDSI-Apollo-57fa612

python

create_logger(os.path.join(self._root_folder, LOGGER_FILE_NAME))

import os import random from abc import ABC, abstractmethod from typing import Dict import numpy as np import pandas as pd import tensorflow as tf from data_generating import tokenizer from data_generating.abstract_data_generator import AbstractDataGenerator class LayerInputNames: """ Names of the inputs to the model. These inputs are generated by the data generator using the learning objectives. """ LABEL = "label" MASKED_VISIT_CONCEPTS = "masked_visit_concepts" MASK_VISIT = "mask_visit" VISIT_PREDICTIONS = "visit_predictions" MASKED_CONCEPT_IDS = "masked_concept_ids" CONCEPT_IDS = "concept_ids" MASK = "mask" TIME_STAMPS = "time_stamps" VISIT_SEGMENTS = "visit_segments" AGES = "ages" VISIT_CONCEPT_ORDERS = "visit_concept_orders" CONCEPT_PREDICTIONS = "concept_predictions" def _pad_sequence(sequence: np.ndarray[any], padding_value: any, max_sequence_length: int) -> np.ndarray[any]: """ Pad a sequence to a given length. Args sequence: The sequence to pad. max_sequence_length: The length to pad to. adding_value: The value to pad with. Returns The padded sequence. """ n_to_pad = max_sequence_length - len(sequence) if n_to_pad > 0: sequence = np.append(sequence, [padding_value] * n_to_pad) return sequence class LearningObjective(ABC): """ A learning objective is a task that can be learned from the data. For example, predicting the next visit. This class is used to generate the data for the learning objective. """ @abstractmethod def initialize(self, data_generator: AbstractDataGenerator): """ An initializer called by the DataGenerator. Other, objective-specific initialization, can be done in __init__. Args data_generator: The calling data generator. """ pass @abstractmethod def process_row(self, row: pd.DataFrame, start_index: int, end_index: int) -> tuple[Dict, Dict]: """ Process a row to generate input and output data for the learning objective Args row: The row to process, as generated by the CDM processing. start_index: Any sequence in the row should start at this index. end_index: Any sequence in the row should end at this index. Returns Two dictonaries to be used by Tensorflow. The first is the input, the second is the output. """ pass @abstractmethod def get_tf_dataset_schema(self) -> tuple[Dict, Dict]: """ Get the schema for the input and output to the tensorflow Dataset Returns A tuple of two dictionaries. The first is the input schema, the second is the output schema. """ pass class BertFineTuningLearningObjective(LearningObjective): def initialize(self, data_generator: AbstractDataGenerator): pass def get_tf_dataset_schema(self) -> tuple[Dict, Dict]: output_dict_schema = {LayerInputNames.LABEL: tf.int32} return {}, output_dict_schema def process_row(self, row: pd.DataFrame, start_index: int, end_index: int) -> tuple[Dict, Dict]: output_dict = {LayerInputNames.LABEL: row.label} return {}, output_dict class VisitPredictionLearningObjective(LearningObjective): def __init__(self, work_folder: str, reuse_tokenizer: bool = True): """ Initialization Args: work_folder: The folder where the tokenizer will be saved. reuse_tokenizer: If true, the tokenizer will be loaded from the work_folder if it exists. """ self._work_folder = work_folder self._visit_tokenizer = None self._reuse_tokenizer = reuse_tokenizer self._max_sequence_length = None def initialize(self, data_generator: AbstractDataGenerator): json_file = os.path.join(self._work_folder, "_visit_tokenizer.json") if self._reuse_tokenizer and os.path.exists(json_file): self._visit_tokenizer = tokenizer.

load_from_json(json_file)

else: self._visit_tokenizer = tokenizer.ConceptTokenizer() self._visit_tokenizer.fit_on_concept_sequences(data_generator.get_parquet_data_iterator(), "visit_concept_ids") self._visit_tokenizer.save_to_json(json_file) self._max_sequence_length = data_generator.get_max_sequence_length() def get_tf_dataset_schema(self): input_dict_schema = { LayerInputNames.MASKED_VISIT_CONCEPTS: tf.int32, LayerInputNames.MASK_VISIT: tf.int32 } output_dict_schema = {LayerInputNames.VISIT_PREDICTIONS: tf.int32} return input_dict_schema, output_dict_schema def process_row(self, row: pd.DataFrame, start_index: int, end_index: int) -> tuple[Dict, Dict]: visit_concept_ids = row.visit_concept_ids[start_index:end_index] visit_token_ids = self._visit_tokenizer.encode(visit_concept_ids) masked_visit_token_ids, output_mask = self._mask_visit_concepts(visit_token_ids) masked_visit_token_ids = _pad_sequence(sequence=masked_visit_token_ids, padding_value=self._visit_tokenizer.get_unused_token_id(), max_sequence_length=self._max_sequence_length) visit_token_ids = _pad_sequence(sequence=masked_visit_token_ids, padding_value=self._visit_tokenizer.get_unused_token_id(), max_sequence_length=self._max_sequence_length) visit_mask = (visit_token_ids == self._visit_tokenizer.get_unused_token_id()).astype(int) combined_label = np.stack([visit_token_ids, output_mask], axis=-1) input_dict = { LayerInputNames.MASKED_VISIT_CONCEPTS: masked_visit_token_ids, LayerInputNames.MASK_VISIT: visit_mask } output_dict = {LayerInputNames.VISIT_PREDICTIONS: combined_label} return input_dict, output_dict def _mask_visit_concepts(self, visit_concepts): masked_visit_concepts = np.asarray(visit_concepts).copy() output_mask = np.zeros((self._max_sequence_length,), dtype=int) for word_pos in range(0, len(visit_concepts)): if random.random() < 0.5: output_mask[word_pos] = 1 masked_visit_concepts[word_pos] = self._visit_tokenizer.get_mask_token_id() return masked_visit_concepts, output_mask class MaskedLanguageModelLearningObjective(LearningObjective): def __init__(self, work_folder: str, reuse_tokenizer: bool = True): """ Initialization Args: work_folder: The folder where the tokenizer will be saved. reuse_tokenizer: If true, the tokenizer will be loaded from the work_folder if it exists. """ self._work_folder = work_folder self._reuse_tokenizer = reuse_tokenizer self._concept_tokenizer = None self._max_sequence_length = None self._is_training = None def initialize(self, data_generator: AbstractDataGenerator): json_file = os.path.join(self._work_folder, "_concept_tokenizer.json") if self._reuse_tokenizer and os.path.exists(json_file): self._concept_tokenizer = tokenizer.load_from_json(json_file) else: self._concept_tokenizer = tokenizer.ConceptTokenizer() self._concept_tokenizer.fit_on_concept_sequences(data_generator.get_parquet_data_iterator(), "concept_ids") self._concept_tokenizer.save_to_json(json_file) self._max_sequence_length = data_generator.get_max_sequence_length() self._is_training = data_generator.get_is_training() def get_tf_dataset_schema(self): input_dict_schema = { LayerInputNames.MASKED_CONCEPT_IDS: tf.int32, LayerInputNames.CONCEPT_IDS: tf.int32, LayerInputNames.MASK: tf.int32, LayerInputNames.TIME_STAMPS: tf.int32, LayerInputNames.VISIT_SEGMENTS: tf.int32, LayerInputNames.AGES: tf.int32, LayerInputNames.VISIT_CONCEPT_ORDERS: tf.int32 } output_dict_schema = {LayerInputNames.CONCEPT_PREDICTIONS: tf.int32} return input_dict_schema, output_dict_schema def process_row(self, row: pd.DataFrame, start_index: int, end_index: int) -> tuple[Dict, Dict]: concept_ids = row.concept_ids[start_index:end_index] visit_segments = row.visit_segments[start_index:end_index] dates = row.dates[start_index:end_index] ages = row.ages[start_index:end_index] visit_concept_orders = row.visit_concept_orders[start_index:end_index] token_ids = self._concept_tokenizer.encode(concept_ids) # Normalize the visit_orders using the smallest visit_concept_orders visit_concept_orders = visit_concept_orders - min(visit_concept_orders) masked_token_ids, output_mask = self._mask_concepts(token_ids) token_ids = _pad_sequence(sequence=token_ids, padding_value=self._concept_tokenizer.get_unused_token_id(), max_sequence_length=self._max_sequence_length) masked_token_ids = _pad_sequence(sequence=masked_token_ids, padding_value=self._concept_tokenizer.get_unused_token_id(), max_sequence_length=self._max_sequence_length) visit_segments = _pad_sequence(sequence=visit_segments, padding_value=self._max_sequence_length, max_sequence_length=self._max_sequence_length) dates = _pad_sequence(sequence=dates, padding_value=self._max_sequence_length, max_sequence_length=self._max_sequence_length) ages = _pad_sequence(sequence=ages, padding_value=self._max_sequence_length, max_sequence_length=self._max_sequence_length) visit_concept_orders = _pad_sequence(sequence=visit_concept_orders, padding_value=self._max_sequence_length - 1, max_sequence_length=self._max_sequence_length) output_mask = (token_ids == self._concept_tokenizer.get_unused_token_id()).astype(int) combined_label = np.stack([token_ids, output_mask], axis=-1) input_dict = {LayerInputNames.MASKED_CONCEPT_IDS: masked_token_ids, LayerInputNames.CONCEPT_IDS: token_ids, LayerInputNames.MASK: output_mask, LayerInputNames.TIME_STAMPS: dates, LayerInputNames.AGES: ages, LayerInputNames.VISIT_SEGMENTS: visit_segments, LayerInputNames.VISIT_CONCEPT_ORDERS: visit_concept_orders} output_dict = {LayerInputNames.CONCEPT_PREDICTIONS: combined_label} return input_dict, output_dict def _mask_concepts(self, concepts): masked_concepts = concepts.copy() output_mask = np.zeros((self._max_sequence_length,), dtype=int) if self._is_training: for word_pos in range(0, len(concepts)): if concepts[word_pos] == self._concept_tokenizer.get_unused_token_id(): break if random.random() < 0.15: dice = random.random() if dice < 0.8: masked_concepts[word_pos] = self._concept_tokenizer.get_mask_token_id() elif dice < 0.9: masked_concepts[word_pos] = random.randint( self._concept_tokenizer.get_first_token_id(), self._concept_tokenizer.get_last_token_id()) # else: 10% of the time we just leave the token as is output_mask[word_pos] = 1 return masked_concepts, output_mask

data_generating/learning_objective.py

OHDSI-Apollo-57fa612

python

load_from_json(json_file)

# -------------------------------------------------------- # Based on BEiT, timm, DINO and DeiT code bases # https://github.com/microsoft/unilm/tree/master/beit # https://github.com/rwightman/pytorch-image-models/tree/master/timm # https://github.com/facebookresearch/deit # https://github.com/facebookresearch/dino # --------------------------------------------------------' import math import sys from typing import Iterable import torch from einops import rearrange from timm.data.constants import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD import utils def train_one_epoch(model: torch.nn.Module, data_loader: Iterable, optimizer: torch.optim.Optimizer, device: torch.device, epoch: int, loss_scaler, max_norm: float = 0, patch_size: int = 16, normlize_target: bool = True, log_writer=None, lr_scheduler=None, start_steps=None, lr_schedule_values=None, wd_schedule_values=None): model.train() metric_logger = utils.MetricLogger(delimiter=" ") metric_logger.add_meter( 'lr', utils.SmoothedValue(window_size=1, fmt='{value:.6f}')) metric_logger.add_meter( 'min_lr', utils.SmoothedValue(window_size=1, fmt='{value:.6f}')) header = 'Epoch: [{}]'.format(epoch) print_freq = 20 for step, batch in enumerate( metric_logger.log_every(data_loader, print_freq, header)): # assign learning rate & weight decay for each step it = start_steps + step # global training iteration if lr_schedule_values is not None or wd_schedule_values is not None: for i, param_group in enumerate(optimizer.param_groups): if lr_schedule_values is not None: param_group["lr"] = lr_schedule_values[it] * param_group[ "lr_scale"] if wd_schedule_values is not None and param_group[ "weight_decay"] > 0: param_group["weight_decay"] = wd_schedule_values[it] # NOTE: When the decoder mask ratio is 0, # in other words, when decoder masking is not used, # decode_masked_pos = ~bool_masked_pos images, bool_masked_pos, decode_masked_pos = batch images = images.to(device, non_blocking=True) bool_masked_pos = bool_masked_pos.to( device, non_blocking=True).flatten(1).to(torch.bool) decode_masked_pos = decode_masked_pos.to( device, non_blocking=True).flatten(1).to(torch.bool) with torch.no_grad(): # calculate the predict label mean = torch.as_tensor(IMAGENET_DEFAULT_MEAN).to(device)[None, :, None, None, None] std = torch.as_tensor(IMAGENET_DEFAULT_STD).to(device)[None, :, None, None, None] unnorm_images = images * std + mean # in [0, 1] if normlize_target: images_squeeze = rearrange( unnorm_images, 'b c (t p0) (h p1) (w p2) -> b (t h w) (p0 p1 p2) c', p0=2, p1=patch_size, p2=patch_size) images_norm = (images_squeeze - images_squeeze.mean( dim=-2, keepdim=True)) / ( images_squeeze.var( dim=-2, unbiased=True, keepdim=True).sqrt() + 1e-6) images_patch = rearrange(images_norm, 'b n p c -> b n (p c)') else: images_patch = rearrange( unnorm_images, 'b c (t p0) (h p1) (w p2) -> b (t h w) (p0 p1 p2 c)', p0=2, p1=patch_size, p2=patch_size) B, N, C = images_patch.shape labels = images_patch[~decode_masked_pos].reshape(B, -1, C) if loss_scaler is None: outputs = model(images, bool_masked_pos, decode_masked_pos) loss = (outputs - labels)**2 loss = loss.mean(dim=-1) cal_loss_mask = bool_masked_pos[~decode_masked_pos].reshape(B, -1) loss = (loss * cal_loss_mask).sum() / cal_loss_mask.sum() else: with torch.cuda.amp.autocast(): outputs = model(images, bool_masked_pos, decode_masked_pos) loss = (outputs - labels)**2 loss = loss.mean(dim=-1) cal_loss_mask = bool_masked_pos[~decode_masked_pos].reshape( B, -1) loss = (loss * cal_loss_mask).sum() / cal_loss_mask.sum() loss_value = loss.item() if not math.isfinite(loss_value): print("Loss is {}, stopping training".format(loss_value)) sys.exit(2) optimizer.zero_grad() if loss_scaler is None: loss.backward() if max_norm is None: grad_norm = utils.

get_grad_norm_(model.parameters())

else: grad_norm = torch.nn.utils.clip_grad_norm_( model.parameters(), max_norm) optimizer.step() loss_scale_value = 0 else: # this attribute is added by timm on one optimizer (adahessian) is_second_order = hasattr( optimizer, 'is_second_order') and optimizer.is_second_order grad_norm = loss_scaler( loss, optimizer, clip_grad=max_norm, parameters=model.parameters(), create_graph=is_second_order) loss_scale_value = loss_scaler.state_dict()["scale"] torch.cuda.synchronize() metric_logger.update(loss=loss_value) metric_logger.update(loss_scale=loss_scale_value) min_lr = 10. max_lr = 0. for group in optimizer.param_groups: min_lr = min(min_lr, group["lr"]) max_lr = max(max_lr, group["lr"]) metric_logger.update(lr=max_lr) metric_logger.update(min_lr=min_lr) weight_decay_value = None for group in optimizer.param_groups: if group["weight_decay"] > 0: weight_decay_value = group["weight_decay"] metric_logger.update(weight_decay=weight_decay_value) metric_logger.update(grad_norm=grad_norm) if log_writer is not None: log_writer.update(loss=loss_value, head="loss") log_writer.update(loss_scale=loss_scale_value, head="opt") log_writer.update(lr=max_lr, head="opt") log_writer.update(min_lr=min_lr, head="opt") log_writer.update(weight_decay=weight_decay_value, head="opt") log_writer.update(grad_norm=grad_norm, head="opt") log_writer.set_step() if lr_scheduler is not None: lr_scheduler.step_update(start_steps + step) # gather the stats from all processes metric_logger.synchronize_between_processes() print("Averaged stats:", metric_logger) return {k: meter.global_avg for k, meter in metric_logger.meters.items()}

engine_for_pretraining.py

OpenGVLab-VideoMAEv2-9492db0

python

get_grad_norm_(model.parameters())

""" Simulate CDM data for testing purposes. Persons are simulated to have hidden disease states. Some states are fixed at the start, to simulate fixed traits such as genetics, while the remaining states are dynamic. The probability to enter a dynamic disease state depending on the current disease states in a non-linear way (i.e. using interactions between states). Concepts are simulated to be observed with probabilities depending on the current disease states, again in a non-linear way. Concepts imply visits, and visits in return increase the probability of observing concepts, thus causing concepts to cluster in time. The simulated data is saved in the CDM format. To generate patient-level predicition problems with a gold standard, the model is executed. For each person, an index date is randomly selected, and Monte-Carlo simulations are performed to simulate the future. """ import cProfile import configparser import json import logging import multiprocessing import os import sys from typing import List from dataclasses import dataclass import numpy as np import tqdm as tqdm import cdm_data import utils.logger as logger LOGGER_FILE_NAME = "_simulation_log.txt" QUIET = 0 CHATTY = 1 OBSESSIVE = 2 JSON_FILE_NAME = "_simulation.json" PRETRAINING_FOLDER = "pretraining" TRAIN_FOLDER = "train" TEST_FOLDER = "test" STATE_TRANSITION_INTERCEPT = -6 # Log probability intercept of transitioning to a new state. CONCEPT_OBSERVATION_INTERCEPT = -8 # Log probability intercept of observing a concept. AGE_INDEX = -2 GENDER_INDEX = -1 def logistic(x): return 1 / (1 + np.exp(-x)) @dataclass class SimulationSettings: dynamic_state_count: int = 10 fixed_state_count: int = 5 concept_count: int = 100 serious_concept_count: int = 10 visit_multiplier: int = 2 days_to_simulate: int = 365 * 2 @dataclass class SimulationTask: partition_count: int @dataclass class PreTrainingTask(SimulationTask): person_count: int @dataclass class PredictionTask(SimulationTask): train_person_count: int test_person_count: int prediction_window: int def _simulate_date_of_birth(current_date: np.datetime64, age_indicator: int) -> tuple[int, int, int]: """ Simulate a date of birth for a person. Args: current_date: The current date. age_indicator: An indicator of the age of the person. Returns: A tuple of the year, month and day of birth. """ if age_indicator == 0: # Simulate a date of birth for a child: birth_date = current_date - np.random.randint(0, 365 * 18) else: # Simulate a date of birth for an adult: birth_date = current_date - np.random.randint(365 * 18, 365 * 100) birth_date = np.datetime64(birth_date, 'D') return birth_date.astype('datetime64[Y]').astype(int) + 1970, \ birth_date.astype('datetime64[M]').astype(int) % 12 + 1, \ birth_date.astype('datetime64[D]').astype(int) % 31 + 1 class Simulator: # Note: Tried using scipy.sparse.csr_matrix, but it was 100 times slower than using a dense matrix. def __init__(self, root_folder: str, settings: SimulationSettings = None, json_file_name: str = None, log_verbosity: int = QUIET, max_cores: int = 1): self._root_folder = root_folder if not os.path.exists(root_folder): os.makedirs(root_folder) self._profile = False self._log_verbosity = log_verbosity self._max_cores = max_cores self._task = SimulationTask(0) self._configure_logger() if settings is None: self._init_from_json(json_file_name) else: self._init_from_settings(settings) self.save_to_json(os.path.join(self._root_folder, JSON_FILE_NAME)) def _init_from_json(self, json_file_name: str): logging.info("Loading simulation configuration from %s", json_file_name) with open(json_file_name, "r") as f: loaded = json.load(f) self._settings = SimulationSettings(**loaded["simulation_settings"]) self._state_count = loaded["state_count"] self._concept_ids = np.array(loaded["concept_ids"]) self._serious_concept_idx = np.array(loaded["serious_concept_idx"]) self._initial_state_probabilities = np.array(loaded["initial_state_probabilities"]) self._dynamic_state_entry_coefs = [np.array(matrix) for matrix in loaded["dynamic_state_entry_coefs"]] self._dynamic_state_exit_probabilities = np.array(loaded["dynamic_state_exit_probabilities"]) self._concept_emmision_coefs = [np.array(matrix) for matrix in loaded["concept_emmision_coefs"]] def _init_from_settings(self, settings: SimulationSettings): self._settings = settings self._state_count = settings.dynamic_state_count + settings.fixed_state_count + 2 # + 2 for age and sex self._concept_ids = np.arange(settings.concept_count) + 1000000 # Initialize probabilities and coefficients: self._initial_state_probabilities = np.concatenate(( np.random.beta(size=settings.dynamic_state_count, a=1, b=4) / settings.dynamic_state_count, np.random.uniform(size=settings.fixed_state_count + 2) )) # Note: really only need half of these matrices to be filled, because interaction matrix will be symmetrical # over diagonal, but it's easier to just fill them completely: self._dynamic_state_entry_coefs = [] for i in range(settings.dynamic_state_count): matrix = np.zeros(self._state_count * self._state_count) non_zero_count = round(len(matrix) / self._state_count) matrix[np.random.choice(len(matrix), size=non_zero_count, replace=False)] = \ np.random.laplace(loc=0, scale=0.1, size=non_zero_count) self._dynamic_state_entry_coefs.append(matrix.reshape(self._state_count, self._state_count)) self._dynamic_state_exit_probabilities = \ np.random.beta(size=settings.dynamic_state_count, a=0.2, b=3) / settings.dynamic_state_count self._concept_emmision_coefs = [] for i in range(settings.concept_count): matrix = np.zeros(self._state_count * self._state_count) non_zero_count = round(len(matrix) / np.sqrt(self._settings.concept_count)) matrix[np.random.choice(len(matrix), size=non_zero_count, replace=False)] = \ np.random.laplace(loc=0, scale=0.5, size=non_zero_count) self._concept_emmision_coefs.append(matrix.reshape(self._state_count, self._state_count)) self._serious_concept_idx = np.zeros(settings.concept_count, dtype=bool) self._serious_concept_idx[np.random.choice(settings.concept_count, size=settings.serious_concept_count, replace=False)] = True def set_profile(self, profile: bool): self._profile = profile def get_profile(self): return self._profile def _configure_logger(self): logger.create_logger(os.path.join(self._root_folder, LOGGER_FILE_NAME)) def _simulate_person(self, person_id: int): if isinstance(self._task, PredictionTask): prediction_labels = np.zeros(self._settings.concept_count, dtype=bool) # Currently just using full prediction window, but could change to make index day random: index_day = self._settings.days_to_simulate - self._task.prediction_window is_prediction = True else: prediction_labels = None index_day = 0 is_prediction = False start_date = np.datetime64("2010-01-01") + np.random.randint(0, 365 * 10) state = np.random.binomial(n=1, p=self._initial_state_probabilities) self._cdm_data.add_observation_period(person_id=person_id, observation_period_id=person_id, observation_period_start_date=start_date, observation_period_end_date=start_date + self._settings.days_to_simulate) year_of_birth, month_of_birth, day_of_birth = _simulate_date_of_birth(start_date, state[AGE_INDEX]) gender_concept_id = 8507 if state[GENDER_INDEX] == 0 else 8532 self._cdm_data.add_person(person_id=person_id, year_of_birth=year_of_birth, month_of_birth=month_of_birth, day_of_birth=day_of_birth, gender_concept_id=gender_concept_id) visit_occurrence_id = person_id * 100000 for t in range(self._settings.days_to_simulate): if self._log_verbosity == OBSESSIVE: logging.debug("Person: %s, Day: %s, State: %s", person_id, t, state) state_interaction_matrix = np.outer(state, state) # Roll dice to change state: flip_to_one = logistic( np.sum(np.asarray(self._dynamic_state_entry_coefs) * state_interaction_matrix[np.newaxis, :, :], axis=(1, 2)) - 6) * (state[:self._settings.dynamic_state_count] == 0) flip_to_zero = (self._dynamic_state_exit_probabilities * (state[:self._settings.dynamic_state_count] == 1)) state_flip_probabilities = flip_to_one + flip_to_zero state[:self._settings.dynamic_state_count] = np.logical_xor(state[:self._settings.dynamic_state_count], np.random.binomial(n=1, p=state_flip_probabilities)) # Roll dice to observe a concept: concept_probabilities = logistic(CONCEPT_OBSERVATION_INTERCEPT + np.sum( np.asarray(self._concept_emmision_coefs) * state_interaction_matrix[np.newaxis, :, :], axis=(1, 2))) admission_concept_idx = (np.random.binomial(n=1, p=concept_probabilities) != 0) visit = admission_concept_idx.any() if visit: # Roll dice again to observe a concept (to simulate the fact that some concepts are more likely to be # observed during a visit): observed_concept_idx = admission_concept_idx | (np.random.binomial(n=self._settings.visit_multiplier, p=concept_probabilities) != 0) if is_prediction and t > index_day: prediction_labels = prediction_labels | observed_concept_idx else: concept_ids = self._concept_ids[observed_concept_idx] for concept_id in concept_ids: self._cdm_data.add_condition_occurrence(person_id=person_id, condition_start_date=start_date + t, condition_concept_id=concept_id, visit_occurrence_id=visit_occurrence_id) # If admission concept is serious, make the visit an emergency room visit, otherwise make it an # outpatient visit: if (admission_concept_idx & self._serious_concept_idx).any(): visit_concept_id = 9203 # Emergency room visit else: visit_concept_id = 9201 # Outpatient visit self._cdm_data.add_visit_occurrence(person_id=person_id, visit_start_date=start_date + t, visit_end_date=start_date + t, visit_concept_id=visit_concept_id, visit_occurrence_id=visit_occurrence_id) visit_occurrence_id += 1 if self._log_verbosity == OBSESSIVE: logging.debug("Person %s visit on day %s with concept IDs: %s", person_id, t, concept_ids) if isinstance(self._cdm_data, cdm_data.

CdmDataWithLabels):

for i in range(self._settings.concept_count): self._cdm_data.add_label(person_id=person_id, concept_id=self._concept_ids[i], label=prediction_labels[i]) def simulate(self, task: SimulationTask): """ Process the CDM data in the provided cdm_data_path. """ self._task = task if isinstance(task, PreTrainingTask): logging.info("Simulating data for pre-training task") output_folder = os.path.join(self._root_folder, PRETRAINING_FOLDER) if not os.path.exists(output_folder): os.makedirs(output_folder) elif isinstance(task, PredictionTask): logging.info("Simulating data for prediction task") train_folder = os.path.join(self._root_folder, TRAIN_FOLDER) if not os.path.exists(train_folder): os.makedirs(train_folder) test_folder = os.path.join(self._root_folder, TEST_FOLDER) if not os.path.exists(test_folder): os.makedirs(test_folder) else: raise ValueError("Unknown task type: %s" % type(task)) if self._profile: cProfile.runctx(statement="self._simulate()", locals={"self": self}, globals={}, filename="../stats") else: self._simulate() def _simulate(self): if self._profile: logging.info("Profiling mode enabled, running first partition in single thread") self._simulate_partition(0) elif self._max_cores == 1: # Run single thread in main thread for easier debugging: for partition_i in range(self._task.partition_count): self._simulate_partition(partition_i) else: pool = multiprocessing.get_context("spawn").Pool(processes=self._max_cores) tasks = range(self._task.partition_count) work = self._simulate_partition for _ in tqdm.tqdm(pool.imap_unordered(work, tasks), total=len(tasks)): pass pool.close() logging.info("Finished simulation") def _simulate_partition(self, partition_i: int): # This function is executed within a thread # Need to re-configure logger because we're in a thread: self._configure_logger() logging.debug("Starting partition %s of %s", partition_i, self._task.partition_count) if isinstance(self._task, PreTrainingTask): self._simulate_person_set(partition_i=partition_i, persons_per_partition=self._task.person_count // self._task.partition_count, output_folder=os.path.join(self._root_folder, PRETRAINING_FOLDER)) elif isinstance(self._task, PredictionTask): self._simulate_person_set(partition_i=partition_i, persons_per_partition=self._task.train_person_count // self._task.partition_count, output_folder=os.path.join(self._root_folder, TRAIN_FOLDER)) self._simulate_person_set(partition_i=partition_i, persons_per_partition=self._task.test_person_count // self._task.partition_count, output_folder=os.path.join(self._root_folder, TEST_FOLDER)) else: raise ValueError("Unknown task type: %s" % type(self._task)) logging.debug("Finished partition %s of %s", partition_i, self._task.partition_count) def _simulate_person_set(self, partition_i: int, persons_per_partition: int, output_folder: str): if isinstance(self._task, PredictionTask): self._cdm_data = cdm_data.CdmDataWithLabels() else: self._cdm_data = cdm_data.CdmData() for i in range(persons_per_partition * partition_i, persons_per_partition * (partition_i + 1)): self._simulate_person(person_id=i) self._cdm_data.log_statistics(partition_i=partition_i) self._cdm_data.write_to_parquet(output_folder, partition_i) def save_to_json(self, file_name: str): with open(file_name, "w") as f: to_save = { "simulation_settings": self._settings.__dict__, "state_count": self._state_count, "concept_ids": self._concept_ids.tolist(), "serious_concept_idx": self._serious_concept_idx.tolist(), "initial_state_probabilities": self._initial_state_probabilities.tolist(), "dynamic_state_exit_probabilities": self._dynamic_state_exit_probabilities.tolist(), "dynamic_state_entry_coefs": [matrix.tolist() for matrix in self._dynamic_state_entry_coefs], "concept_emmision_coefs": [matrix.tolist() for matrix in self._concept_emmision_coefs] } json.dump(to_save, f) def main(args: List[str]): config = configparser.ConfigParser() with open(args[0]) as file: # Explicitly opening file so error is thrown when not found config.read_file(file) if config["simulation"].get("json_file_name") == "": settings = SimulationSettings( dynamic_state_count=config["simulation"].getint("dynamic_state_count"), fixed_state_count=config["simulation"].getint("fixed_state_count"), concept_count=config["simulation"].getint("concept_count"), serious_concept_count=config["simulation"].getint("serious_concept_count"), visit_multiplier=config["simulation"].getint("visit_multiplier"), days_to_simulate=config["simulation"].getint("days_to_simulate")) json_file_name = None else: settings = None json_file_name = config["simulation"].get("json_file_name") config.remove_section("simulation") simulator = Simulator(root_folder=config["system"].get("root_folder"), settings=settings, json_file_name=json_file_name, log_verbosity=config["debug"].getint("log_verbosity"), max_cores=config["system"].getint("max_cores")) # Log config after initializing cdm_data_processor so logger is initialized: logger.log_config(config) if config["debug"].getboolean("profile"): simulator.set_profile(True) if config["pre-training data generation"].getboolean("generate_pre_training_data"): task = PreTrainingTask(partition_count=config["pre-training data generation"].getint("partition_count"), person_count=config["pre-training data generation"].getint("person_count")) simulator.simulate(task) if config["prediction data generation"].getboolean("generate_prediction_data"): task = PredictionTask(partition_count=config["prediction data generation"].getint("partition_count"), train_person_count=config["prediction data generation"].getint("train_person_count"), test_person_count=config["prediction data generation"].getint("test_person_count"), prediction_window=config["prediction data generation"].getint("prediction_window")) simulator.simulate(task) if __name__ == "__main__": if len(sys.argv) != 2: raise Exception("Must provide path to ini file as argument") else: main(sys.argv[1:])

simulating/simulator.py

OHDSI-Apollo-57fa612

python

CdmDataWithLabels):

import pytest from hyperliquid.info import Info @pytest.mark.vcr() def test_get_user_state(): info = Info(skip_ws=True) response = info.user_state("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response["assetPositions"]) == 12 assert response["marginSummary"]["accountValue"] == "1182.312496" @pytest.mark.vcr() def test_get_open_orders(): info = Info(skip_ws=True) response = info.open_orders("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response) == 196 @pytest.mark.vcr() def test_get_all_mids(): info = Info(skip_ws=True) response = info.all_mids() assert "BTC" in response assert "ETH" in response assert "ATOM" in response assert "MATIC" in response @pytest.mark.vcr() def test_get_user_fills(): info = Info(skip_ws=True) response = info.user_fills("0xb7b6f3cea3f66bf525f5d8f965f6dbf6d9b017b2") assert isinstance(response, list) assert response[0]["crossed"] is True @pytest.mark.vcr() def test_get_info(): info = Info(skip_ws=True) response = info.meta() assert len(response["universe"]) == 28 assert response["universe"][0]["name"] == "BTC" assert response["universe"][0]["szDecimals"] == 5 @pytest.mark.vcr() @pytest.mark.parametrize("endTime", [None, 1684811870000]) def test_get_funding_history(endTime): info = Info(skip_ws=True) if endTime is None: response = info.funding_history(coin="BTC", startTime=1681923833000) else: response = info.funding_history(coin="BTC", startTime=1681923833000, endTime=endTime) assert len(response) != 0 assert response[0]["coin"] == "BTC" for key in ["coin", "fundingRate", "premium", "time"]: assert key in response[0].keys() @pytest.mark.vcr() def test_get_l2_snapshot(): info = Info(skip_ws=True) response = info.

l2_snapshot(coin="DYDX")

assert len(response) != 0 assert len(response["levels"]) == 2 assert response["coin"] == "DYDX" for key in ["coin", "time"]: assert key in response.keys() for key in ["n", "sz", "px"]: assert key in response["levels"][0][0].keys() assert key in response["levels"][1][0].keys() @pytest.mark.vcr() def test_get_candles_snapshot(): info = Info(skip_ws=True) response = info.candles_snapshot(coin="kPEPE", interval="1h", startTime=1684702007000, endTime=1684784807000) assert len(response) == 24 for key in ["T", "c", "h", "i", "l", "n", "o", "s", "t", "v"]: assert key in response[0].keys()

tests/info_test.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

l2_snapshot(coin="DYDX")

import pytest from hyperliquid.info import Info @pytest.mark.vcr() def test_get_user_state(): info = Info(skip_ws=True) response = info.user_state("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response["assetPositions"]) == 12 assert response["marginSummary"]["accountValue"] == "1182.312496" @pytest.mark.vcr() def test_get_open_orders(): info = Info(skip_ws=True) response = info.open_orders("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response) == 196 @pytest.mark.vcr() def test_get_all_mids(): info = Info(skip_ws=True) response = info.all_mids() assert "BTC" in response assert "ETH" in response assert "ATOM" in response assert "MATIC" in response @pytest.mark.vcr() def test_get_user_fills(): info = Info(skip_ws=True) response = info.

user_fills("0xb7b6f3cea3f66bf525f5d8f965f6dbf6d9b017b2")

assert isinstance(response, list) assert response[0]["crossed"] is True @pytest.mark.vcr() def test_get_info(): info = Info(skip_ws=True) response = info.meta() assert len(response["universe"]) == 28 assert response["universe"][0]["name"] == "BTC" assert response["universe"][0]["szDecimals"] == 5 @pytest.mark.vcr() @pytest.mark.parametrize("endTime", [None, 1684811870000]) def test_get_funding_history(endTime): info = Info(skip_ws=True) if endTime is None: response = info.funding_history(coin="BTC", startTime=1681923833000) else: response = info.funding_history(coin="BTC", startTime=1681923833000, endTime=endTime) assert len(response) != 0 assert response[0]["coin"] == "BTC" for key in ["coin", "fundingRate", "premium", "time"]: assert key in response[0].keys() @pytest.mark.vcr() def test_get_l2_snapshot(): info = Info(skip_ws=True) response = info.l2_snapshot(coin="DYDX") assert len(response) != 0 assert len(response["levels"]) == 2 assert response["coin"] == "DYDX" for key in ["coin", "time"]: assert key in response.keys() for key in ["n", "sz", "px"]: assert key in response["levels"][0][0].keys() assert key in response["levels"][1][0].keys() @pytest.mark.vcr() def test_get_candles_snapshot(): info = Info(skip_ws=True) response = info.candles_snapshot(coin="kPEPE", interval="1h", startTime=1684702007000, endTime=1684784807000) assert len(response) == 24 for key in ["T", "c", "h", "i", "l", "n", "o", "s", "t", "v"]: assert key in response[0].keys()

tests/info_test.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

user_fills("0xb7b6f3cea3f66bf525f5d8f965f6dbf6d9b017b2")

from hyperliquid.api import API from hyperliquid.utils.types import Any, Callable, Meta, Optional, Subscription, cast from hyperliquid.websocket_manager import WebsocketManager class Info(API): def __init__(self, base_url=None, skip_ws=False): super().__init__(base_url) if not skip_ws: self.ws_manager = WebsocketManager(self.base_url) self.ws_manager.start() def user_state(self, address: str) -> Any: """Retrieve trading details about a user. POST /info Args: address (str): Onchain address in 42-character hexadecimal format; e.g. 0x0000000000000000000000000000000000000000. Returns: { assetPositions: [ { position: { coin: str, entryPx: Optional[float string] leverage: { type: "cross" | "isolated", value: int, rawUsd: float string # only if type is "isolated" }, liquidationPx: Optional[float string] marginUsed: float string, maxTradeSzs: List[float string], positionValue: float string, returnOnEquity: float string, szi: float string, unrealizedPnl: float string }, type: "oneWay" } ], crossMarginSummary: MarginSummary, marginSummary: MarginSummary } where MarginSummary is { accountValue: float string, totalMarginUsed: float string, totalNtlPos: float string, totalRawUsd: float string, withdrawable: float string, } """ return self.

post("/info", {"type": "clearinghouseState", "user": address})

def open_orders(self, address: str) -> Any: """Retrieve a user's open orders. POST /info Args: address (str): Onchain address in 42-character hexadecimal format; e.g. 0x0000000000000000000000000000000000000000. Returns: [ { coin: str, limitPx: float string, oid: int, side: "A" | "B", sz: float string, timestamp: int } ] """ return self.post("/info", {"type": "openOrders", "user": address}) def all_mids(self) -> Any: """Retrieve all mids for all actively traded coins. POST /info Returns: { ATOM: float string, BTC: float string, any other coins which are trading: float string } """ return self.post("/info", {"type": "allMids"}) def user_fills(self, address: str) -> Any: """Retrieve a given user's fills. POST /info Args: address (str): Onchain address in 42-character hexadecimal format; e.g. 0x0000000000000000000000000000000000000000. Returns: [ { closedPnl: float string, coin: str, crossed: bool, dir: str, hash: str, oid: int, px: float string, side: str, startPosition: float string, sz: float string, time: int }, ... ] """ return self.post("/info", {"type": "userFills", "user": address}) def meta(self) -> Meta: """Retrieve exchange metadata POST /info Returns: { universe: [ { name: str, szDecimals: int }, ... ] } """ return cast(Meta, self.post("/info", {"type": "meta"})) def funding_history(self, coin: str, startTime: int, endTime: Optional[int] = None) -> Any: """Retrieve funding history for a given coin POST /info Args: coin (str): Coin to retrieve funding history for. startTime (int): Unix timestamp in milliseconds. endTime (int): Unix timestamp in milliseconds. Returns: [ { coin: str, fundingRate: float string, premium: float string, time: int }, ... ] """ if endTime is not None: return self.post( "/info", {"type": "fundingHistory", "coin": coin, "startTime": startTime, "endTime": endTime} ) return self.post("/info", {"type": "fundingHistory", "coin": coin, "startTime": startTime}) def l2_snapshot(self, coin: str) -> Any: """Retrieve L2 snapshot for a given coin POST /info Args: coin (str): Coin to retrieve L2 snapshot for. Returns: { coin: str, levels: [ [ { n: int, px: float string, sz: float string }, ... ], ... ], time: int } """ return self.post("/info", {"type": "l2Book", "coin": coin}) def candles_snapshot(self, coin: str, interval: str, startTime: int, endTime: int) -> Any: """Retrieve candles snapshot for a given coin POST /info Args: coin (str): Coin to retrieve candles snapshot for. interval (str): Candlestick interval. startTime (int): Unix timestamp in milliseconds. endTime (int): Unix timestamp in milliseconds. Returns: [ { T: int, c: float string, h: float string, i: str, l: float string, n: int, o: float string, s: string, t: int, v: float string }, ... ] """ req = {"coin": coin, "interval": interval, "startTime": startTime, "endTime": endTime} return self.post("/info", {"type": "candleSnapshot", "req": req}) def subscribe(self, subscription: Subscription, callback: Callable[[Any], None]) -> int: if self.ws_manager is None: raise RuntimeError("Cannot call subscribe since skip_ws was used") else: return self.ws_manager.subscribe(subscription, callback) def unsubscribe(self, subscription: Subscription, subscription_id: int) -> bool: if self.ws_manager is None: raise RuntimeError("Cannot call unsubscribe since skip_ws was used") else: return self.ws_manager.unsubscribe(subscription, subscription_id)

hyperliquid/info.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

post("/info", {"type": "clearinghouseState", "user": address})

import pytest from hyperliquid.info import Info @pytest.mark.vcr() def test_get_user_state(): info = Info(skip_ws=True) response = info.user_state("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response["assetPositions"]) == 12 assert response["marginSummary"]["accountValue"] == "1182.312496" @pytest.mark.vcr() def test_get_open_orders(): info = Info(skip_ws=True) response = info.open_orders("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response) == 196 @pytest.mark.vcr() def test_get_all_mids(): info = Info(skip_ws=True) response = info.all_mids() assert "BTC" in response assert "ETH" in response assert "ATOM" in response assert "MATIC" in response @pytest.mark.vcr() def test_get_user_fills(): info = Info(skip_ws=True) response = info.user_fills("0xb7b6f3cea3f66bf525f5d8f965f6dbf6d9b017b2") assert isinstance(response, list) assert response[0]["crossed"] is True @pytest.mark.vcr() def test_get_info(): info = Info(skip_ws=True) response = info.meta() assert len(response["universe"]) == 28 assert response["universe"][0]["name"] == "BTC" assert response["universe"][0]["szDecimals"] == 5 @pytest.mark.vcr() @pytest.mark.parametrize("endTime", [None, 1684811870000]) def test_get_funding_history(endTime): info = Info(skip_ws=True) if endTime is None: response = info.

funding_history(coin="BTC", startTime=1681923833000)

else: response = info.funding_history(coin="BTC", startTime=1681923833000, endTime=endTime) assert len(response) != 0 assert response[0]["coin"] == "BTC" for key in ["coin", "fundingRate", "premium", "time"]: assert key in response[0].keys() @pytest.mark.vcr() def test_get_l2_snapshot(): info = Info(skip_ws=True) response = info.l2_snapshot(coin="DYDX") assert len(response) != 0 assert len(response["levels"]) == 2 assert response["coin"] == "DYDX" for key in ["coin", "time"]: assert key in response.keys() for key in ["n", "sz", "px"]: assert key in response["levels"][0][0].keys() assert key in response["levels"][1][0].keys() @pytest.mark.vcr() def test_get_candles_snapshot(): info = Info(skip_ws=True) response = info.candles_snapshot(coin="kPEPE", interval="1h", startTime=1684702007000, endTime=1684784807000) assert len(response) == 24 for key in ["T", "c", "h", "i", "l", "n", "o", "s", "t", "v"]: assert key in response[0].keys()

tests/info_test.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

funding_history(coin="BTC", startTime=1681923833000)

import pytest from hyperliquid.info import Info @pytest.mark.vcr() def test_get_user_state(): info = Info(skip_ws=True) response = info.user_state("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response["assetPositions"]) == 12 assert response["marginSummary"]["accountValue"] == "1182.312496" @pytest.mark.vcr() def test_get_open_orders(): info = Info(skip_ws=True) response = info.open_orders("0x5e9ee1089755c3435139848e47e6635505d5a13a") assert len(response) == 196 @pytest.mark.vcr() def test_get_all_mids(): info = Info(skip_ws=True) response = info.all_mids() assert "BTC" in response assert "ETH" in response assert "ATOM" in response assert "MATIC" in response @pytest.mark.vcr() def test_get_user_fills(): info = Info(skip_ws=True) response = info.user_fills("0xb7b6f3cea3f66bf525f5d8f965f6dbf6d9b017b2") assert isinstance(response, list) assert response[0]["crossed"] is True @pytest.mark.vcr() def test_get_info(): info = Info(skip_ws=True) response = info.meta() assert len(response["universe"]) == 28 assert response["universe"][0]["name"] == "BTC" assert response["universe"][0]["szDecimals"] == 5 @pytest.mark.vcr() @pytest.mark.parametrize("endTime", [None, 1684811870000]) def test_get_funding_history(endTime): info = Info(skip_ws=True) if endTime is None: response = info.funding_history(coin="BTC", startTime=1681923833000) else: response = info.funding_history(coin="BTC", startTime=1681923833000, endTime=endTime) assert len(response) != 0 assert response[0]["coin"] == "BTC" for key in ["coin", "fundingRate", "premium", "time"]: assert key in response[0].keys() @pytest.mark.vcr() def test_get_l2_snapshot(): info = Info(skip_ws=True) response = info.l2_snapshot(coin="DYDX") assert len(response) != 0 assert len(response["levels"]) == 2 assert response["coin"] == "DYDX" for key in ["coin", "time"]: assert key in response.keys() for key in ["n", "sz", "px"]: assert key in response["levels"][0][0].keys() assert key in response["levels"][1][0].keys() @pytest.mark.vcr() def test_get_candles_snapshot(): info = Info(skip_ws=True) response = info.

candles_snapshot(coin="kPEPE", interval="1h", startTime=1684702007000, endTime=1684784807000)

assert len(response) == 24 for key in ["T", "c", "h", "i", "l", "n", "o", "s", "t", "v"]: assert key in response[0].keys()

tests/info_test.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

candles_snapshot(coin="kPEPE", interval="1h", startTime=1684702007000, endTime=1684784807000)

import json import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.info import Info from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) info = Info(constants.TESTNET_API_URL, skip_ws=True) exchange = Exchange(account, constants.TESTNET_API_URL) # Get the user state and print out leverage information for ETH user_state = info.user_state(account.address) print("Current leverage for ETH:") print(json.dumps(user_state["assetPositions"][exchange.

coin_to_asset["ETH"]]["position"]["leverage"], indent=2))

# Set the ETH leverage to 21x (cross margin) print(exchange.update_leverage(21, "ETH")) # Set the ETH leverage to 22x (isolated margin) print(exchange.update_leverage(21, "ETH", False)) # Add 1 dollar of extra margin to the ETH position print(exchange.update_isolated_margin(1, "ETH")) # Get the user state and print out the final leverage information after our changes user_state = info.user_state(account.address) print("Current leverage for ETH:") print(json.dumps(user_state["assetPositions"][exchange.coin_to_asset["ETH"]]["position"]["leverage"], indent=2)) if __name__ == "__main__": main()

examples/basic_leverage_adjustment.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

coin_to_asset["ETH"]]["position"]["leverage"], indent=2))

import json import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.info import Info from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) info = Info(constants.TESTNET_API_URL, skip_ws=True) exchange = Exchange(account, constants.TESTNET_API_URL) # Get the user state and print out leverage information for ETH user_state = info.user_state(account.address) print("Current leverage for ETH:") print(json.dumps(user_state["assetPositions"][exchange.coin_to_asset["ETH"]]["position"]["leverage"], indent=2)) # Set the ETH leverage to 21x (cross margin) print(exchange.update_leverage(21, "ETH")) # Set the ETH leverage to 22x (isolated margin) print(exchange.update_leverage(21, "ETH", False)) # Add 1 dollar of extra margin to the ETH position print(exchange.

update_isolated_margin(1, "ETH"))

# Get the user state and print out the final leverage information after our changes user_state = info.user_state(account.address) print("Current leverage for ETH:") print(json.dumps(user_state["assetPositions"][exchange.coin_to_asset["ETH"]]["position"]["leverage"], indent=2)) if __name__ == "__main__": main()

examples/basic_leverage_adjustment.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

update_isolated_margin(1, "ETH"))

""" This example demonstrates how to round numbers when placing orders. Both Price (px) and Size (sz) have a maximum number of decimals that are accepted. Prices are precise to the lesser of 5 significant figures or 6 decimals. For example, 1234.5 is valid but 1234.56 is not. 0.001234 is valid, but 0.0012345 is not. Sizes are rounded to the szDecimals of that asset. For example, if szDecimals = 3 then 1.001 is a valid size but 1.0001 is not. You can find the szDecimals for an asset by making a meta request to the info endpoint """ import json import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.info import Info from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) info = Info(constants.TESTNET_API_URL, skip_ws=True) # Get the exchange's metadata and print it out meta = info.meta() print(json.dumps(meta, indent=2)) # create a szDecimals map sz_decimals = {} for asset_info in meta["universe"]: sz_decimals[asset_info["name"]] = asset_info["szDecimals"] # For demonstration purposes we'll start with a price and size that have too many digits sz = 12.345678 px = 1.2345678 coin = "OP" # If you use these directly, the exchange will return an error, so we round them. # First we round px to 5 significant figures and 6 decimals px = round(float(f"{px:.5g}"), 6) # Next we round sz based on the sz_decimals map we created sz = round(sz, sz_decimals[coin]) print(f"placing order with px {px} and sz {sz}") exchange = Exchange(account, constants.TESTNET_API_URL) order_result = exchange.

order(coin, True, sz, px, {"limit": {"tif": "Gtc"}})

print(order_result) # Cancel the order if order_result["status"] == "ok": status = order_result["response"]["data"]["statuses"][0] if "resting" in status: cancel_result = exchange.cancel(coin, status["resting"]["oid"]) print(cancel_result) if __name__ == "__main__": main()

examples/rounding.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

order(coin, True, sz, px, {"limit": {"tif": "Gtc"}})

import json import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.info import Info from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) info = Info(constants.TESTNET_API_URL, skip_ws=True) exchange = Exchange(account, constants.TESTNET_API_URL) # Get the user state and print out leverage information for ETH user_state = info.user_state(account.address) print("Current leverage for ETH:") print(json.dumps(user_state["assetPositions"][exchange.coin_to_asset["ETH"]]["position"]["leverage"], indent=2)) # Set the ETH leverage to 21x (cross margin) print(exchange.

update_leverage(21, "ETH"))

# Set the ETH leverage to 22x (isolated margin) print(exchange.update_leverage(21, "ETH", False)) # Add 1 dollar of extra margin to the ETH position print(exchange.update_isolated_margin(1, "ETH")) # Get the user state and print out the final leverage information after our changes user_state = info.user_state(account.address) print("Current leverage for ETH:") print(json.dumps(user_state["assetPositions"][exchange.coin_to_asset["ETH"]]["position"]["leverage"], indent=2)) if __name__ == "__main__": main()

examples/basic_leverage_adjustment.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

update_leverage(21, "ETH"))

""" This example demonstrates how to round numbers when placing orders. Both Price (px) and Size (sz) have a maximum number of decimals that are accepted. Prices are precise to the lesser of 5 significant figures or 6 decimals. For example, 1234.5 is valid but 1234.56 is not. 0.001234 is valid, but 0.0012345 is not. Sizes are rounded to the szDecimals of that asset. For example, if szDecimals = 3 then 1.001 is a valid size but 1.0001 is not. You can find the szDecimals for an asset by making a meta request to the info endpoint """ import json import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.info import Info from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) info = Info(constants.TESTNET_API_URL, skip_ws=True) # Get the exchange's metadata and print it out meta = info.meta() print(json.dumps(meta, indent=2)) # create a szDecimals map sz_decimals = {} for asset_info in meta["universe"]: sz_decimals[asset_info["name"]] = asset_info["szDecimals"] # For demonstration purposes we'll start with a price and size that have too many digits sz = 12.345678 px = 1.2345678 coin = "OP" # If you use these directly, the exchange will return an error, so we round them. # First we round px to 5 significant figures and 6 decimals px = round(float(f"{px:.5g}"), 6) # Next we round sz based on the sz_decimals map we created sz = round(sz, sz_decimals[coin]) print(f"placing order with px {px} and sz {sz}") exchange = Exchange(account, constants.TESTNET_API_URL) order_result = exchange.order(coin, True, sz, px, {"limit": {"tif": "Gtc"}}) print(order_result) # Cancel the order if order_result["status"] == "ok": status = order_result["response"]["data"]["statuses"][0] if "resting" in status: cancel_result = exchange.

cancel(coin, status["resting"]["oid"])

print(cancel_result) if __name__ == "__main__": main()

examples/rounding.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

cancel(coin, status["resting"]["oid"])

import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) exchange = Exchange(account, constants.TESTNET_API_URL) # Create an agent that can place trades on behalf of the account. The agent does not have permission to transfer # or withdraw funds. # You can run this part on a separate machine or change the code to connect the agent via a wallet app instead of # using your private key directly in python approve_result, agent_key = exchange.

approve_agent()

if approve_result["status"] != "ok": print("approving agent failed", approve_result) return # Place an order that should rest by setting the price very low agent_account: LocalAccount = eth_account.Account.from_key(agent_key) print("Running with agent address:", account.address) exchange = Exchange(agent_account, constants.TESTNET_API_URL) order_result = exchange.order("ETH", True, 0.2, 1000, {"limit": {"tif": "Gtc"}}) print(order_result) # Cancel the order if order_result["status"] == "ok": status = order_result["response"]["data"]["statuses"][0] if "resting" in status: cancel_result = exchange.cancel("ETH", status["resting"]["oid"]) print(cancel_result) if __name__ == "__main__": main()

examples/basic_agent.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

approve_agent()

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo") self.assertEqual(config.smart_llm_model, "gpt-4") self.assertEqual(config.fast_token_limit, 4000) self.assertEqual(config.smart_token_limit, 8000) def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.

set_fast_llm_model("gpt-3.5-turbo-test")

self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.set_fast_token_limit(5000) self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.set_smart_token_limit(9000) self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

set_fast_llm_model("gpt-3.5-turbo-test")

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo") self.assertEqual(config.

smart_llm_model, "gpt-4")

self.assertEqual(config.fast_token_limit, 4000) self.assertEqual(config.smart_token_limit, 8000) def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.set_fast_llm_model("gpt-3.5-turbo-test") self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.set_fast_token_limit(5000) self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.set_smart_token_limit(9000) self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

smart_llm_model, "gpt-4")

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo") self.assertEqual(config.smart_llm_model, "gpt-4") self.assertEqual(config.fast_token_limit, 4000) self.assertEqual(config.

smart_token_limit, 8000)

def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.set_fast_llm_model("gpt-3.5-turbo-test") self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.set_fast_token_limit(5000) self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.set_smart_token_limit(9000) self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

smart_token_limit, 8000)

import os import sys # Probably a better way: sys.path.append(os.path.abspath('../scripts')) from memory.local import LocalCache def MockConfig(): return type('MockConfig', (object,), { 'debug_mode': False, 'continuous_mode': False, 'speak_mode': False, 'memory_index': 'auto-gpt', }) class TestLocalCache(unittest.TestCase): def setUp(self): self.cfg = MockConfig() self.cache = LocalCache(self.cfg) def test_add(self): text = "Sample text" self.cache.add(text) self.assertIn(text, self.cache.data.texts) def test_clear(self): self.cache.clear() self.assertEqual(self.cache.data, [""]) def test_get(self): text = "Sample text" self.cache.add(text) result = self.cache.get(text) self.assertEqual(result, [text]) def test_get_relevant(self): text1 = "Sample text 1" text2 = "Sample text 2" self.cache.add(text1) self.cache.add(text2) result = self.cache.

get_relevant(text1, 1)

self.assertEqual(result, [text1]) def test_get_stats(self): text = "Sample text" self.cache.add(text) stats = self.cache.get_stats() self.assertEqual(stats, (1, self.cache.data.embeddings.shape)) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/local_cache_test.py

Kubenew-ChaosGPT-2c40353

python

get_relevant(text1, 1)

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.

fast_llm_model, "gpt-3.5-turbo")

self.assertEqual(config.smart_llm_model, "gpt-4") self.assertEqual(config.fast_token_limit, 4000) self.assertEqual(config.smart_token_limit, 8000) def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.set_fast_llm_model("gpt-3.5-turbo-test") self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.set_fast_token_limit(5000) self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.set_smart_token_limit(9000) self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

fast_llm_model, "gpt-3.5-turbo")

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo") self.assertEqual(config.smart_llm_model, "gpt-4") self.assertEqual(config.fast_token_limit, 4000) self.assertEqual(config.smart_token_limit, 8000) def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.set_fast_llm_model("gpt-3.5-turbo-test") self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.set_fast_token_limit(5000) self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.

set_smart_token_limit(9000)

self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

set_smart_token_limit(9000)

import logging import os import random import re import time from logging import LogRecord from colorama import Fore from colorama import Style import speak from config import Config from config import Singleton cfg = Config() ''' Logger that handle titles in different colors. Outputs logs in console, activity.log, and errors.log For console handler: simulates typing ''' class Logger(metaclass=Singleton): def __init__(self): # create log directory if it doesn't exist log_dir = os.path.join('..', 'logs') if not os.path.exists(log_dir): os.makedirs(log_dir) log_file = "activity.log" error_file = "error.log" console_formatter = AutoGptFormatter('%(title_color)s %(message)s') # Create a handler for console which simulate typing self.typing_console_handler = TypingConsoleHandler() self.typing_console_handler.setLevel(logging.INFO) self.typing_console_handler.setFormatter(console_formatter) # Create a handler for console without typing simulation self.console_handler = ConsoleHandler() self.console_handler.setLevel(logging.DEBUG) self.console_handler.setFormatter(console_formatter) # Info handler in activity.log self.file_handler = logging.FileHandler(os.path.join(log_dir, log_file)) self.file_handler.setLevel(logging.DEBUG) info_formatter = AutoGptFormatter('%(asctime)s %(levelname)s %(title)s %(message_no_color)s') self.file_handler.setFormatter(info_formatter) # Error handler error.log error_handler = logging.FileHandler(os.path.join(log_dir, error_file)) error_handler.setLevel(logging.ERROR) error_formatter = AutoGptFormatter( '%(asctime)s %(levelname)s %(module)s:%(funcName)s:%(lineno)d %(title)s %(message_no_color)s') error_handler.setFormatter(error_formatter) self.typing_logger = logging.getLogger('TYPER') self.typing_logger.addHandler(self.typing_console_handler) self.typing_logger.addHandler(self.file_handler) self.typing_logger.addHandler(error_handler) self.typing_logger.setLevel(logging.DEBUG) self.logger = logging.getLogger('LOGGER') self.logger.addHandler(self.console_handler) self.logger.addHandler(self.file_handler) self.logger.addHandler(error_handler) self.logger.setLevel(logging.DEBUG) def typewriter_log( self, title='', title_color='', content='', speak_text=False, level=logging.INFO): if speak_text and cfg.speak_mode: speak.

say_text(f"{title}. {content}")

if content: if isinstance(content, list): content = " ".join(content) else: content = "" self.typing_logger.log(level, content, extra={'title': title, 'color': title_color}) def debug( self, message, title='', title_color='', ): self._log(title, title_color, message, logging.DEBUG) def warn( self, message, title='', title_color='', ): self._log(title, title_color, message, logging.WARN) def error( self, title, message='' ): self._log(title, Fore.RED, message, logging.ERROR) def _log( self, title='', title_color='', message='', level=logging.INFO): if message: if isinstance(message, list): message = " ".join(message) self.logger.log(level, message, extra={'title': title, 'color': title_color}) def set_level(self, level): self.logger.setLevel(level) self.typing_logger.setLevel(level) ''' Output stream to console using simulated typing ''' class TypingConsoleHandler(logging.StreamHandler): def emit(self, record): min_typing_speed = 0.05 max_typing_speed = 0.01 msg = self.format(record) try: words = msg.split() for i, word in enumerate(words): print(word, end="", flush=True) if i < len(words) - 1: print(" ", end="", flush=True) typing_speed = random.uniform(min_typing_speed, max_typing_speed) time.sleep(typing_speed) # type faster after each word min_typing_speed = min_typing_speed * 0.95 max_typing_speed = max_typing_speed * 0.95 print() except Exception: self.handleError(record) class ConsoleHandler(logging.StreamHandler): def emit(self, record): msg = self.format(record) try: print(msg) except Exception: self.handleError(record) ''' Allows to handle custom placeholders 'title_color' and 'message_no_color'. To use this formatter, make sure to pass 'color', 'title' as log extras. ''' class AutoGptFormatter(logging.Formatter): def format(self, record: LogRecord) -> str: if (hasattr(record, 'color')): record.title_color = getattr(record, 'color') + getattr(record, 'title') + " " + Style.RESET_ALL else: record.title_color = getattr(record, 'title') if hasattr(record, 'msg'): record.message_no_color = remove_color_codes(getattr(record, 'msg')) else: record.message_no_color = '' return super().format(record) def remove_color_codes(s: str) -> str: ansi_escape = re.compile(r'\x1B(?:[@-Z\\-_]|\[[0-?]*[ -/]*[@-~])') return ansi_escape.sub('', s) logger = Logger()

Chaos-GPT-master/Auto-GPT-master/scripts/logger.py

Kubenew-ChaosGPT-2c40353

python

say_text(f"{title}. {content}")

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo") self.assertEqual(config.smart_llm_model, "gpt-4") self.assertEqual(config.fast_token_limit, 4000) self.assertEqual(config.smart_token_limit, 8000) def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.set_fast_llm_model("gpt-3.5-turbo-test") self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.

set_fast_token_limit(5000)

self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.set_smart_token_limit(9000) self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

set_fast_token_limit(5000)

import eth_account import utils from eth_account.signers.local import LocalAccount from hyperliquid.exchange import Exchange from hyperliquid.utils import constants def main(): config = utils.get_config() account: LocalAccount = eth_account.Account.from_key(config["secret_key"]) print("Running with account address:", account.address) exchange = Exchange(account, constants.TESTNET_API_URL) # Create an agent that can place trades on behalf of the account. The agent does not have permission to transfer # or withdraw funds. # You can run this part on a separate machine or change the code to connect the agent via a wallet app instead of # using your private key directly in python approve_result, agent_key = exchange.approve_agent() if approve_result["status"] != "ok": print("approving agent failed", approve_result) return # Place an order that should rest by setting the price very low agent_account: LocalAccount = eth_account.Account.from_key(agent_key) print("Running with agent address:", account.address) exchange = Exchange(agent_account, constants.TESTNET_API_URL) order_result = exchange.

order("ETH", True, 0.2, 1000, {"limit": {"tif": "Gtc"}})

print(order_result) # Cancel the order if order_result["status"] == "ok": status = order_result["response"]["data"]["statuses"][0] if "resting" in status: cancel_result = exchange.cancel("ETH", status["resting"]["oid"]) print(cancel_result) if __name__ == "__main__": main()

examples/basic_agent.py

hyperliquid-dex-hyperliquid-python-sdk-6ddfbfb

python

order("ETH", True, 0.2, 1000, {"limit": {"tif": "Gtc"}})

import unittest from scripts.config import Config class TestConfig(unittest.TestCase): def test_singleton(self): config1 = Config() config2 = Config() self.assertIs(config1, config2) def test_initial_values(self): config = Config() self.assertFalse(config.debug_mode) self.assertFalse(config.continuous_mode) self.assertFalse(config.speak_mode) self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo") self.assertEqual(config.smart_llm_model, "gpt-4") self.assertEqual(config.

fast_token_limit, 4000)

self.assertEqual(config.smart_token_limit, 8000) def test_set_continuous_mode(self): config = Config() config.set_continuous_mode(True) self.assertTrue(config.continuous_mode) def test_set_speak_mode(self): config = Config() config.set_speak_mode(True) self.assertTrue(config.speak_mode) def test_set_fast_llm_model(self): config = Config() config.set_fast_llm_model("gpt-3.5-turbo-test") self.assertEqual(config.fast_llm_model, "gpt-3.5-turbo-test") def test_set_smart_llm_model(self): config = Config() config.set_smart_llm_model("gpt-4-test") self.assertEqual(config.smart_llm_model, "gpt-4-test") def test_set_fast_token_limit(self): config = Config() config.set_fast_token_limit(5000) self.assertEqual(config.fast_token_limit, 5000) def test_set_smart_token_limit(self): config = Config() config.set_smart_token_limit(9000) self.assertEqual(config.smart_token_limit, 9000) def test_set_debug_mode(self): config = Config() config.set_debug_mode(True) self.assertTrue(config.debug_mode) if __name__ == '__main__': unittest.main()

Chaos-GPT-master/Auto-GPT-master/tests/test_config.py

Kubenew-ChaosGPT-2c40353

python

fast_token_limit, 4000)

from typing import Optional, Any, Type from git.repo import Repo from pydantic import BaseSettings from .models.events import EventUnion, IssueLabelEvent from .repos.completions_repo import get_completions_repo from .services.action_service import ActionService from .services.agent_service import AgentService from .services.chain_service import ChainService from .services.commit_service import CommitService from .services.diff_service import GitApplyService from .services.publish_service import PublishService from .services.rail_service import RailService import structlog class Settings(BaseSettings): agent_id: str = 'plan_and_code' agent_config: Optional[dict[str, Any]] = None base_branch: str = 'main' target_branch_name_template: str = 'autopr/{issue_number}' overwrite_existing: bool = False loading_gif_url: str = "https://media0.giphy.com/media/l3nWhI38IWDofyDrW/giphy.gif" model: str = "gpt-4" temperature: float = 0.8 rail_temperature: float = 0.4 context_limit: int = 8192 min_tokens: int = 1000 max_tokens: int = 2000 num_reasks: int = 2 class MainService: settings_class: Type[Settings] = Settings publish_service_class: Type[PublishService] = PublishService def __init__(self): self.log = structlog.get_logger() self.settings = settings = self.settings_class.parse_obj({}) # pyright workaround self.event = self.get_event() self.repo_path = self.get_repo_path() self.repo = Repo(self.repo_path) self.branch_name = self.get_branch_name() self.base_branch_name = self.get_base_branch_name() self.publish_service = self.get_publish_service() # Create commit service commit_service = CommitService( repo=self.repo, repo_path=self.repo_path, branch_name=self.branch_name, base_branch_name=self.base_branch_name, ) commit_service.ensure_branch_exists() # Create completions repo completions_repo = get_completions_repo( publish_service=self.publish_service, model=settings.model, context_limit=settings.context_limit, min_tokens=settings.min_tokens, max_tokens=settings.max_tokens, temperature=settings.temperature, ) # Create rail and chain service rail_service = RailService( completions_repo=completions_repo, min_tokens=settings.min_tokens, context_limit=settings.context_limit, num_reasks=settings.num_reasks, temperature=settings.rail_temperature, publish_service=self.publish_service, ) chain_service = ChainService( completions_repo=completions_repo, publish_service=self.publish_service, context_limit=settings.context_limit, min_tokens=settings.min_tokens, ) # Create diff service diff_service = GitApplyService(repo=self.repo) # Create action service and agent service action_service = ActionService( repo=self.repo, completions_repo=completions_repo, rail_service=rail_service, publish_service=self.publish_service, chain_service=chain_service, ) self.agent_service = AgentService( repo=self.repo, publish_service=self.publish_service, rail_service=rail_service, chain_service=chain_service, diff_service=diff_service, commit_service=commit_service, action_service=action_service, ) def run(self): # Generate the PR self.agent_service.

run_agent(self.settings.agent_id, self.settings.agent_config, self.event)

def get_repo_path(self): raise NotImplementedError def get_event(self) -> EventUnion: raise NotImplementedError def get_publish_service(self, **additional_kwargs): # Get repo owner and name from remote URL remote_url = self.repo.remotes.origin.url owner, repo_name = remote_url.removesuffix(".git").split('/')[-2:] if isinstance(self.event, IssueLabelEvent): issue = self.event.issue pull_request_number = None else: issue = None pull_request_number = self.event.pull_request.number return self.publish_service_class( owner=owner, repo_name=repo_name, head_branch=self.branch_name, base_branch=self.base_branch_name, issue=issue, pull_request_number=pull_request_number, loading_gif_url=self.settings.loading_gif_url, overwrite_existing=self.settings.overwrite_existing, **additional_kwargs, ) def get_branch_name(self): if isinstance(self.event, IssueLabelEvent): branch_name = self.settings.target_branch_name_template.format(issue_number=self.event.issue.number) if not self.settings.overwrite_existing: # check if branch exists, if so, append a number to the end remote = self.repo.remote() references = remote.fetch() i = 2 while f'{remote.name}/{branch_name}' in [ref.name for ref in references]: branch_name = self.settings.target_branch_name_template.format( issue_number=self.event.issue.number) + f'-{i}' i += 1 return branch_name else: return self.event.pull_request.head_branch def get_base_branch_name(self): if isinstance(self.event, IssueLabelEvent): return self.settings.base_branch else: return self.event.pull_request.base_branch

autopr/main.py

irgolic-AutoPR-10e2891

python

run_agent(self.settings.agent_id, self.settings.agent_config, self.event)

from typing import ClassVar import pydantic import structlog from autopr.utils.tokenizer import get_tokenizer log = structlog.get_logger() class PromptBase(pydantic.BaseModel): """ Base class for all prompt specifications. Prompt parameters should be specified as pydantic instance attributes. They will be automatically filled into the `prompt_template` string, wherever they are referenced as {param}. """ #: The prompt template to use for the LLM call (reference string parameters as {param}). prompt_template: ClassVar[str] = '' # TODO implement extra_params in rail_service and chain_service #: Extra parameters to pass to the guardrails LLM call. # extra_params: ClassVar[dict[str, Any]] = {} def get_prompt_message(self) -> str: """ Get the prompt message that is sent the LLM call. """ spec = self.prompt_template prompt_params = self.get_string_params() return spec.format(**prompt_params) def get_string_params(self) -> dict[str, str]: """ Get the parameters of the prompt as a dictionary of strings. Override this method to specify your own parameters. """ prompt_params = {} for key, value in self: if isinstance(value, list): prompt_params[key] = '\n\n'.join( [str(item) for item in value] ) else: prompt_params[key] = str(value) return prompt_params def calculate_prompt_token_length(self) -> int: """ Calculate the number of tokens in the prompt message. """ tokenizer = get_tokenizer() prompt_message = self.get_prompt_message() return len(tokenizer.

encode(prompt_message))

def ensure_token_length(self, max_length: int) -> bool: """ Ensure that the prompt message is no longer than `max_length` tokens. """ # Make sure there are at least `min_tokens` tokens left while max_length < self.calculate_prompt_token_length(): # Iteratively trim the params if not self.trim_params(): rail_name = self.__class__.__name__ log.debug(f'Could not trim params on rail {rail_name}: {self.get_string_params()}') return False return True def trim_params(self) -> bool: """ Override this method to trim the parameters of the prompt. This is called when the prompt is too long. By default, this method removes the last element of the first list it finds. TODO give this method better heuristics for trimming, so it doesn't just get called over and over again. """ log.warning("Naively trimming params", rail=self) prompt_params = dict(self) # If there are any lists, remove the last element of the first one you find for key, value in prompt_params.items(): if isinstance(value, list) and len(value) > 0: setattr(self, key, value[:-1]) return True return False

autopr/models/prompt_base.py

irgolic-AutoPR-10e2891

python

encode(prompt_message))

from typing import Optional, Any, Type from git.repo import Repo from pydantic import BaseSettings from .models.events import EventUnion, IssueLabelEvent from .repos.completions_repo import get_completions_repo from .services.action_service import ActionService from .services.agent_service import AgentService from .services.chain_service import ChainService from .services.commit_service import CommitService from .services.diff_service import GitApplyService from .services.publish_service import PublishService from .services.rail_service import RailService import structlog class Settings(BaseSettings): agent_id: str = 'plan_and_code' agent_config: Optional[dict[str, Any]] = None base_branch: str = 'main' target_branch_name_template: str = 'autopr/{issue_number}' overwrite_existing: bool = False loading_gif_url: str = "https://media0.giphy.com/media/l3nWhI38IWDofyDrW/giphy.gif" model: str = "gpt-4" temperature: float = 0.8 rail_temperature: float = 0.4 context_limit: int = 8192 min_tokens: int = 1000 max_tokens: int = 2000 num_reasks: int = 2 class MainService: settings_class: Type[Settings] = Settings publish_service_class: Type[PublishService] = PublishService def __init__(self): self.log = structlog.get_logger() self.settings = settings = self.settings_class.parse_obj({}) # pyright workaround self.event = self.get_event() self.repo_path = self.get_repo_path() self.repo = Repo(self.repo_path) self.branch_name = self.get_branch_name() self.base_branch_name = self.get_base_branch_name() self.publish_service = self.get_publish_service() # Create commit service commit_service = CommitService( repo=self.repo, repo_path=self.repo_path, branch_name=self.branch_name, base_branch_name=self.base_branch_name, ) commit_service.

ensure_branch_exists()

# Create completions repo completions_repo = get_completions_repo( publish_service=self.publish_service, model=settings.model, context_limit=settings.context_limit, min_tokens=settings.min_tokens, max_tokens=settings.max_tokens, temperature=settings.temperature, ) # Create rail and chain service rail_service = RailService( completions_repo=completions_repo, min_tokens=settings.min_tokens, context_limit=settings.context_limit, num_reasks=settings.num_reasks, temperature=settings.rail_temperature, publish_service=self.publish_service, ) chain_service = ChainService( completions_repo=completions_repo, publish_service=self.publish_service, context_limit=settings.context_limit, min_tokens=settings.min_tokens, ) # Create diff service diff_service = GitApplyService(repo=self.repo) # Create action service and agent service action_service = ActionService( repo=self.repo, completions_repo=completions_repo, rail_service=rail_service, publish_service=self.publish_service, chain_service=chain_service, ) self.agent_service = AgentService( repo=self.repo, publish_service=self.publish_service, rail_service=rail_service, chain_service=chain_service, diff_service=diff_service, commit_service=commit_service, action_service=action_service, ) def run(self): # Generate the PR self.agent_service.run_agent(self.settings.agent_id, self.settings.agent_config, self.event) def get_repo_path(self): raise NotImplementedError def get_event(self) -> EventUnion: raise NotImplementedError def get_publish_service(self, **additional_kwargs): # Get repo owner and name from remote URL remote_url = self.repo.remotes.origin.url owner, repo_name = remote_url.removesuffix(".git").split('/')[-2:] if isinstance(self.event, IssueLabelEvent): issue = self.event.issue pull_request_number = None else: issue = None pull_request_number = self.event.pull_request.number return self.publish_service_class( owner=owner, repo_name=repo_name, head_branch=self.branch_name, base_branch=self.base_branch_name, issue=issue, pull_request_number=pull_request_number, loading_gif_url=self.settings.loading_gif_url, overwrite_existing=self.settings.overwrite_existing, **additional_kwargs, ) def get_branch_name(self): if isinstance(self.event, IssueLabelEvent): branch_name = self.settings.target_branch_name_template.format(issue_number=self.event.issue.number) if not self.settings.overwrite_existing: # check if branch exists, if so, append a number to the end remote = self.repo.remote() references = remote.fetch() i = 2 while f'{remote.name}/{branch_name}' in [ref.name for ref in references]: branch_name = self.settings.target_branch_name_template.format( issue_number=self.event.issue.number) + f'-{i}' i += 1 return branch_name else: return self.event.pull_request.head_branch def get_base_branch_name(self): if isinstance(self.event, IssueLabelEvent): return self.settings.base_branch else: return self.event.pull_request.base_branch

autopr/main.py

irgolic-AutoPR-10e2891

python

ensure_branch_exists()

from autopr.actions.base import Action, ContextDict from autopr.models.artifacts import Issue class RequestMoreInfo(Action): id = "request_more_information" description = "Request more information from the user." class Arguments(Action.Arguments): message: str output_spec = "<string name='message'/>" def run(self, arguments: Arguments, context: ContextDict) -> ContextDict: # Get the issue from the context if 'issue' in context: issue = context['issue'] if not isinstance(issue, Issue): self.log.error(f"Expected issue to be of type Issue, got {type(issue)}") raise TypeError(f"Expected issue to be of type Issue, got {type(issue)}") issue_number = issue.number else: issue_number = None # Get the message from the arguments message = arguments.message # Add a comment to the issue success = self.

publish_service.publish_comment(message, issue_number)

if not success: self.log.error(f"Failed to comment on issue") raise RuntimeError(f"Failed to comment on issue") # Return the context return context

autopr/actions/request_more_info.py

irgolic-AutoPR-10e2891

python

publish_service.publish_comment(message, issue_number)

from typing import Optional from git import Blob from git.repo import Repo import pydantic import structlog import os from pathspec import PathSpec from pathspec.patterns.gitwildmatch import GitWildMatchPattern from autopr.utils.tokenizer import get_tokenizer log = structlog.get_logger() class FileDescriptor(pydantic.BaseModel): path: str token_length: int chunks: list[list[tuple[int, str]]] # list of (line number, line content) pairs start_chunk: int = 0 end_chunk: int = -1 # this will be overwritten by the root validator @pydantic.root_validator(pre=True) def validate_end_chunk(cls, values): if 'end_chunk' not in values: values['end_chunk'] = len(values['chunks']) return values def filepaths_with_token_lengths_to_str(self) -> str: # TODO give info on what chunks we've already seen return f'{self.path} ({str(self.token_length)} tokens)' # chunks_left = self.end_chunk - self.start_chunk # return f'{self.path} ({str(self.token_length)} tokens) ({str(chunks_left)} chunks left)' def filenames_and_contents_to_str(self) -> str: contents = '' if self.start_chunk > 0: contents += f'... # (omitting {self.start_chunk} chunks)\n' # TODO make the line numbers right-aligned with padded spaces, # so that the line numbers don't change the start of the line contents += '\n'.join([ f'{str(line_number)} {line_content}' for chunk in self.chunks[self.start_chunk:self.end_chunk] for line_number, line_content in chunk ]) if self.end_chunk < len(self.chunks): contents += f'\n... # (omitting {len(self.chunks) - self.end_chunk} chunks)' return f'>>> Path: {self.path}:\n\n{contents}' def trim_chunk(file_desc_with_chunk_start_end: list[FileDescriptor]) -> bool: if file_desc_with_chunk_start_end: # Find file with most chunks longest_num = 0 longest_i = 0 for i, desc in enumerate(file_desc_with_chunk_start_end): num_chunks = desc.end_chunk - desc.start_chunk if num_chunks > longest_num: longest_num = num_chunks longest_i = i desc = file_desc_with_chunk_start_end[longest_i] # If we've already looked at the whole file, remove it from the list if desc.start_chunk == desc.end_chunk - 1: del file_desc_with_chunk_start_end[longest_i] return True # Otherwise, shave a chunk off the end desc.end_chunk -= 1 file_desc_with_chunk_start_end[longest_i] = desc return True return False def filter_seen_chunks(seen_fds: list[FileDescriptor], prospective_fds: list[FileDescriptor]) -> list[FileDescriptor]: fds_copy = [f.copy(deep=True) for f in prospective_fds] omit_prospective_fd_indices = [] for selected_fd in seen_fds: # If it's in prospective_file_descriptors, update its start_chunk for prospective_fd in fds_copy: if prospective_fd.path == selected_fd.path: # If we've already looked at the whole file, remove it from the list if prospective_fd.end_chunk == selected_fd.end_chunk: omit_prospective_fd_indices.append(fds_copy.index(prospective_fd)) else: prospective_fd.start_chunk = selected_fd.end_chunk break for i in sorted(omit_prospective_fd_indices, reverse=True): del fds_copy[i] return fds_copy _file_descriptor_cache: dict[tuple[bytes, int, int], list[FileDescriptor]] = {} def repo_to_file_descriptors(repo: Repo, context_window: int, file_chunk_size: int) -> list[FileDescriptor]: repo_tree = repo.head.commit.tree key = (repo_tree.binsha, context_window, file_chunk_size) ignore_patterns = parse_gptignore(repo) if key in _file_descriptor_cache: return [fd.copy(deep=True) for fd in _file_descriptor_cache[key]] file_descriptor_list = [] for blob in repo_tree.traverse(): if not isinstance(blob, Blob): continue if blob.type == 'tree': continue if is_path_ignored(blob.path, ignore_patterns): continue try: content = blob.data_stream.read().decode() except UnicodeDecodeError: log.debug(f"Error decoding file: {blob.path}") continue tokenizer = get_tokenizer() tokens = tokenizer.

encode(content)

# Split into chunks up to the last newline chunks: list[list[tuple[int, str]]] = [] line_buffer = [] for i, line in enumerate(content.splitlines()): line_buffer.append((i, line)) # FIXME speed this up token_length = len(tokenizer.encode( '\n'.join([l[1] for l in line_buffer]) )) if token_length >= file_chunk_size: chunks.append(line_buffer) line_buffer = [] if line_buffer: chunks.append(line_buffer) token_length = len(tokens) file_descriptor_list.append(FileDescriptor( path=blob.path, token_length=token_length, chunks=chunks, )) _file_descriptor_cache[key] = file_descriptor_list return file_descriptor_list def is_path_ignored(path: str, ignore_patterns: list[str]) -> bool: # Ensure we're working with a relative path relative_path = os.path.relpath(path) pathspec = PathSpec.from_lines(GitWildMatchPattern, ignore_patterns) return pathspec.match_file(relative_path) def parse_gptignore(repo: Repo, gptignore_file: str = ".gptignore") -> list[str]: if gptignore_file not in repo.head.commit.tree: return [] gptignore_blob = repo.head.commit.tree / gptignore_file gptignore_content = gptignore_blob.data_stream.read().decode() ignore_patterns = [] for line in gptignore_content.splitlines(): line = line.strip() if line and not line.startswith("#"): ignore_patterns.append(line) return ignore_patterns

autopr/utils/repo.py

irgolic-AutoPR-10e2891

python

encode(content)

import json from unittest import TestCase import image_api from unittest.mock import patch, MagicMock # Function to load an image as base64 string def load_image(image_path): with open(image_path, "rb") as image_file: return image_file.read() class TryTesting(TestCase): @patch('image_api.upload_image_to_s3', MagicMock) def test_appropriate_content_should_return_200(self): body = { "file_name": "lamp.jpeg", "file_type": "image/jpeg", "file_content": "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" } event = { "body": json.dumps(body) } response = image_api.

lambda_handler(event, None)

self.assertEqual(response['statusCode'], 200) @patch('image_api.upload_image_to_s3', MagicMock) def test_inappropriate_content_should_return_400(self): body = { "file_name": "gun.jpeg", "file_type": "image/jpeg", "file_content": "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" } event = { "body": json.dumps(body) } response = image_api.lambda_handler(event, None) self.assertEqual(response['statusCode'], 400)

python/images/test_image_api.py

aws-samples-amazon-codewhisperer-immersion-day-7b3dc66

python

lambda_handler(event, None)

from autopr.actions.base import Action, ContextDict from autopr.models.artifacts import Issue class RequestMoreInfo(Action): id = "request_more_information" description = "Request more information from the user." class Arguments(Action.Arguments): message: str output_spec = "<string name='message'/>" def run(self, arguments: Arguments, context: ContextDict) -> ContextDict: # Get the issue from the context if 'issue' in context: issue = context['issue'] if not isinstance(issue, Issue): self.

log.error(f"Expected issue to be of type Issue, got {type(issue)}")

raise TypeError(f"Expected issue to be of type Issue, got {type(issue)}") issue_number = issue.number else: issue_number = None # Get the message from the arguments message = arguments.message # Add a comment to the issue success = self.publish_service.publish_comment(message, issue_number) if not success: self.log.error(f"Failed to comment on issue") raise RuntimeError(f"Failed to comment on issue") # Return the context return context

autopr/actions/request_more_info.py

irgolic-AutoPR-10e2891

python

log.error(f"Expected issue to be of type Issue, got {type(issue)}")

from typing import Any from fastapi import Response, Depends, Security from fastapi.security.api_key import APIKeyHeader from passlib.hash import pbkdf2_sha256 from sqlmodel import Session, select from core.addons.exceptions import APIError from core.db import require_db_session from core.db.tables import User from settings import settings async def general_http_headers(response: Response) -> Any: """ Adds keys,values to response headers. E.g, Cache-Control Args: response: starlette response object Returns: None """ response.headers["cache-control"] = "no-cache, no-store" require_general_http_headers = Depends(general_http_headers) api_key_header = APIKeyHeader(name=settings.

api_key_header, auto_error=False)

def general_authentication_header(api_key: str = Security(api_key_header), session: Session = Depends(require_db_session)) -> Any: """ Retrieves api key in request header and checks api key exists in user db. Args: api_key: request api key session: db session dependency. Raises: APIException: 401 and 500 status codes. """ try: if not api_key: raise APIError(status_code=401, code="General Authentication Header", reason="Unauthorised request") query = select(User) result = session.exec(query).all() check = [x.api_key for x in result if x.api_key.startswith("$pbkdf2-sha256") and pbkdf2_sha256.verify(api_key, x.api_key)] if not check: raise APIError(status_code=401, code="General Authentication Header", reason="Unauthorised request") except APIError: raise except Exception as exc: raise APIError(status_code=500, code="General Authentication Header", reason="Runtime error occurred") from exc require_general_authentication_header = Depends(general_authentication_header)

api/headers.py

netorc-community-netorc-324512e

python

api_key_header, auto_error=False)

from datetime import datetime from libgravatar import Gravatar from sqlalchemy.orm import Session from src.database.models import User, BlacklistToken from src.schemas.users import UserModel, UserChangeRole, UserUpdate, UserUpdateAdmin, UserShow from src.services.auth import auth_service async def get_user_by_email(email: str, db: Session) -> User | None: """ Function takes in an email and a database session, and returns the user with that email if it exists. If no such user exists, it returns None. Arguments: email (str): Pass in the email of the user we want to find db (Session): SQLAlchemy session object for accessing the database Returns: User | None: A user object or None if the user is not found """ return db.query(User).filter_by(email=email).first() async def create_user(body: UserModel, db: Session) -> User: """ The create_user function creates a new user in the database. Arguments: body (UserModel): Pass in the UserModel object that is created from the request body db (Session): SQLAlchemy session object for accessing the database Returns: User: A user object, which is the same as what we return from our get_user function """ g = Gravatar(body.email) new_user = User(**body.dict(), user_pic_url=g.get_image()) db.add(new_user) db.commit() db.refresh(new_user) return new_user async def update_token(user: User, refresh_token: str | None, db: Session) -> None: """ The update_token function updates the refresh token for a user. Arguments: user (User): Pass the user object to the function refresh_token (str | None): Pass the refresh token to the update_token function db (Session): SQLAlchemy session object for accessing the database Returns: None """ user.refresh_token = refresh_token db.commit() async def update_avatar(email: str, url: str, db: Session) -> User: """ The update_avatar function updates the avatar of a user. Arguments: email (str): Find the user in the database by this email url (str): Pass in the url of the avatar that we want to update db (Session): SQLAlchemy session object for accessing the database Returns: User: A user object """ user = await get_user_by_email(email, db) user.avatar = url db.commit() return user async def update_user(body: UserUpdate, user: User, db: Session) -> User | None: """ Updates user profile. Logged-in user can update his information. Arguments: body (UserUpdate): A set of user attributes to update user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User | None: A user object or None """ user = db.query(User).filter(User.

id == body.id).first()

if user: user.name = body.name user.email = body.email user.user_pic_url = body.user_pic_url user.password_checksum = auth_service.pwd_context.hash(body.password_checksum) user.updated_at = datetime.now() db.commit() return user async def update_user_by_admin(body: UserUpdateAdmin, user: User, db: Session) -> User | None: """ Updates user profile. Logged-in admin can update any profile. Arguments: body (UserUpdateAdmin): A set of user attributes to update user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User | None: A user object or None """ user_to_update = db.query(User).filter(User.id == body.id).first() if user_to_update: user_to_update.login = body.login user_to_update.name = body.name user_to_update.email = body.email user_to_update.is_active = body.is_active user_to_update.role = body.role user_to_update.user_pic_url = body.user_pic_url user_to_update.password_checksum = auth_service.pwd_context.hash(body.password_checksum) user_to_update.updated_at = datetime.now() db.commit() return user_to_update return None async def change_role(body: UserChangeRole, user: User, db: Session) -> User | None: """ Logged-in admin can change role of any profile by ID. Arguments: body (UserChangeRole): A set of user new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User | None: A user object or None """ user_to_update = db.query(User).filter(User.id == body.id).first() if user_to_update: user_to_update.role = body.role user_to_update.updated_at = datetime.now() db.commit() return user_to_update return None async def ban_user(user_id: int, db: Session) -> User | None: """ Sets user status to inactive. Arguments: user_id (int): A set of user new role db (Session): SQLAlchemy session object for accessing the database Returns: User | None: A user object or None """ user_to_ban = db.query(User).filter(User.id == user_id).first() if user_to_ban: user_to_ban.is_active = False db.commit() return user_to_ban return None async def get_user_profile(login: str, db: Session) -> UserShow | None: """ function returns a UserShow object containing the user's information. Arguments: login (str): Get the user profile of a specific user db (Session): SQLAlchemy session object for accessing the database Returns: User | None: A UserShow object or None """ user = db.query(User).filter(User.login == login).first() if user: user_profile = UserShow( id=user.id, login=user.login, email=user.email, role=user.role, user_pic_url=user.user_pic_url, name=user.name, is_active=user.is_active, ) return user_profile return None async def add_to_blacklist(token: str, db: Session) -> None: """ Function adds a token to the blacklist. Arguments: token (str): The JWT that is being blacklisted. db (Session): SQLAlchemy session object for accessing the database Returns: None """ blacklist_token = BlacklistToken(token=token, added_on=datetime.now()) db.add(blacklist_token) db.commit() db.refresh(blacklist_token) return None async def is_blacklisted_token(token: str, db: Session) -> bool: """ Function takes checks if a token is blacklisted. Arguments: token (str): token to be checked db (Session): SQLAlchemy session object for accessing the database Returns: bool """ blacklist_token = db.query(BlacklistToken).filter(BlacklistToken.token == token).first() if blacklist_token: return True return False

src/repository/users.py

last-war-photoshare-fastapi-67888ff

python

id == body.id).first()

from typing import List from fastapi import HTTPException from sqlalchemy.orm import Session from sqlalchemy import and_, func, desc from starlette import status from src.database.models import Rating, User, Image async def create_rate(image_id: int, rate: int, db: Session, user: User) -> Rating: """ The create_rate function creates a new rate for the image with the given id. Args: image_id (int): The id of the image to be rated. rate (int): The rating value. db (Session): SQLAlchemy session object for accessing the database user (User): The User object that is creating the rate. Returns: Comment: the Rating object representing the new rating. """ is_self_image = db.query(Image).filter(Image.id == image_id).first().user_id == user.id already_rated = db.query(Rating).filter(and_(Rating.image_id == image_id, Rating.user_id == user.id)).first() image_exists = db.query(Image).filter(Image.id == image_id).first() if is_self_image: raise HTTPException(status_code=status.HTTP_423_LOCKED, detail="It`s not possible to rate own image.") if already_rated: raise HTTPException(status_code=status.HTTP_423_LOCKED, detail="It`s not possible to rate twice.") if image_exists: new_rate = Rating(image_id=image_id, rate=rate, user_id=user.id) db.add(new_rate) db.commit() db.refresh(new_rate) return new_rate async def delete_rate(rate_id: int, db: Session, user: User) -> None: """ The delete_rate function deletes a rating from the database. Args: rate_id (int): The id of the rating to be deleted. db (Session): A connection to the database. user (User): The User object that is removes the rate. Returns: None """ rate = db.query(Rating).filter(Rating.id == rate_id).first() if rate: db.delete(rate) db.commit() return None async def calculate_rating(image_id: int, db: Session, user: User) -> float | None: """ The calculate_rating function calculate an average rating of the image. Args: image_id (int): The id of the image for calculating rating. db (Session): A connection to the database. user (User): The User object which calculates the rating. Returns: float: The average rating of the image """ rating = db.query(func.avg(Rating.

rate)).filter(Rating.image_id == image_id).scalar()

return rating async def show_images_by_rating(to_decrease: bool, db: Session, user: User) -> List[Image] | list: """ The show_images_by_rating function show all images in db, sorted by rating. Args: to_decrease (bool): The boolean value, that indicates the direction of sorting. db (Session): A connection to the database. user (User): The User object which asks for a list of sorted images Returns: List[Image] | None: a list of Image objects sorted by rating or list if no matching rate """ if to_decrease: images = db.query(Image, func.avg(Rating.rate).label('rate')).join(Rating).order_by(desc('rate')).group_by(Image).all() else: images = db.query(Image, func.avg(Rating.rate).label('rate')).join(Rating).order_by('rate').group_by(Image).all() rez = [] for image in images: rez.append(image.Image) return rez

src/repository/ratings.py

last-war-photoshare-fastapi-67888ff

python

rate)).filter(Rating.image_id == image_id).scalar()

import uvicorn from fastapi import FastAPI, Depends, HTTPException from fastapi.responses import HTMLResponse from sqlalchemy.orm import Session from sqlalchemy import text from src.database.db import get_db from src.routes import users, auth, comments, tags, images, ratings app = FastAPI() @app.get("/", description='Main page') def root(): """ Main page definition :return: dict: health status """ return {"message": "Welcome to the FAST API from team 6"} @app.get("/api/healthchecker") def healthchecker(db: Session = Depends(get_db)): """ Health Checker :param db: database session :return: dict: health status """ try: result = db.execute(text("SELECT 1")).fetchone() if result is None: raise HTTPException(status_code=500, detail="Database is not configured correctly") return {"message": "Welcome to FastAPI!"} except Exception: raise HTTPException(status_code=500, detail="Error connecting to the database") app.include_router(users.

router, prefix='/api')

app.include_router(auth.router, prefix='/api') app.include_router(comments.router, prefix='/api') app.include_router(images.router, prefix='/api') app.include_router(tags.router, prefix='/api') app.include_router(ratings.router, prefix='/api')

main.py

last-war-photoshare-fastapi-67888ff

python

router, prefix='/api')

from typing import List from fastapi import APIRouter, Depends, status, HTTPException, Path from src.database.models import UserRole from src.repository import tags as repository_tag from src.schemas.tags import TagResponse, TagModel from src.schemas.images import ImageResponse from sqlalchemy.orm import Session from src.database.db import get_db from src.services.roles import RoleAccess router = APIRouter(prefix='/tag', tags=['tags']) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.post("/{tags_string}", response_model=List[TagResponse], dependencies=[Depends(allowed_operation_post)], status_code=status.HTTP_201_CREATED) async def create_tags(tags_string: str, db: Session = Depends(get_db)): """ create new tag from string find # and separated by spaces Arguments: tags_string (str): string to parse db (Session): SQLAlchemy session object for accessing the database Returns: List[Tag]: new tags list """ tag = await repository_tag.create_tags(tags_string, db) return tag @router.get("/image/{tag_name}", response_model=List[ImageResponse], dependencies=[Depends(allowed_operation_get)]) async def get_images_by_tag(tag_name: str, limit: int = 10, offset: int = 0, db: Session = Depends(get_db)): """ route to get images by tag name Arguments: offset (int): number of tags to skip in the search limit (int): maximum number of tags to retrieve tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: List[Image] | None: a list of Image or None if no matching tag were found """ tag = await repository_tag.

get_images_by_tag(tag_name, limit, offset, db)

if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.get("/{tag_name}", response_model=TagResponse, dependencies=[Depends(allowed_operation_get)]) async def get_one(tag_name: str, db: Session = Depends(get_db)): """ route to get tag object by tag name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.put("/{tag_id}", response_model=TagResponse, dependencies=[Depends(allowed_operation_put)]) async def update_tag(body: TagModel, tag_id: int = Path(ge=1), db: Session = Depends(get_db)): """ The update_tag function updates a tag in the database. The function takes an id and a body as input, and returns the updated tag. If no tag is found with that id, it raises an HTTP 404 error. Arguments: body (TagModel): all need field to update tag_id (int): Find the tag to be deleted db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag_by_id(tag_id, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') edit_tag = await repository_tag.edit_tag(tag, body, db) return edit_tag @router.delete("/{tag_name}", dependencies=[Depends(allowed_operation_delete)], status_code=status.HTTP_204_NO_CONTENT) async def delete(tag_name: str, db: Session = Depends(get_db)): """ route to delete tag finded by name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: None """ tag = await repository_tag.delete_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return None

src/routes/tags.py

last-war-photoshare-fastapi-67888ff

python

get_images_by_tag(tag_name, limit, offset, db)

from datetime import datetime, timedelta from typing import Optional from fastapi import Depends, HTTPException, status from passlib.context import CryptContext from fastapi.security import OAuth2PasswordBearer # Bearer token from sqlalchemy.orm import Session from jose import JWTError, jwt from src.database.db import get_db from src.repository import users as repository_users from src.conf.config import settings class Auth: pwd_context = CryptContext(schemes=["bcrypt"], deprecated="auto") SECRET_KEY = settings.secret_key ALGORITHM = settings.algorithm oauth2_scheme = OAuth2PasswordBearer(tokenUrl="/api/auth/login") credentials_exception = HTTPException( status_code=status.HTTP_401_UNAUTHORIZED, detail="Could not validate credentials", headers={"WWW-Authenticate": "Bearer"}, ) @classmethod def token_decode(cls, token: str) -> dict: """ Try to decode the token Arguments: token (str): token to take decoded Returns: dict with results of decoded token """ try: return jwt.decode(token, cls.SECRET_KEY, algorithms=[cls.ALGORITHM]) except JWTError: raise cls.credentials_exception @classmethod async def create_access_token(cls, data: dict, expires_delta: Optional[float] = None) -> dict: """ The create_access_token function creates a new access token for the user. The function takes in two arguments: data and expires_delta. Data is a dictionary that contains all of the information about the user, such as their username, email address, etc. Expires_delta is an optional argument that specifies how long you want your access token to be valid for (in seconds). If no value is specified then it defaults to 48 hours. Arguments: data (dict): A dictionary containing the user's id and username. expires_delta (Optional[float]): The number of seconds until the token expires, defaults to None. Returns: A token that is encoded with the data, current time, expiry time and scope """ to_encode = data.copy() if expires_delta: expire = datetime.utcnow() + timedelta(seconds=expires_delta) else: expire = datetime.utcnow() + timedelta(hours=48) to_encode.update({"iat": datetime.utcnow(), "exp": expire, "scope": "access_token"}) encoded_access_token = jwt.encode(to_encode, cls.SECRET_KEY, algorithm=cls.ALGORITHM) return encoded_access_token @classmethod async def create_refresh_token(cls, data: dict, expires_delta: Optional[float] = None): """ The create_refresh_token function creates a refresh token for the user. Arguments: data (dict): A dictionary containing the user's id and username. expires_delta (Optional[float]): Set the expiration time of the refresh token Returns: An encoded refresh token """ to_encode = data.copy() if expires_delta: expire = datetime.utcnow() + timedelta(seconds=expires_delta) else: expire = datetime.utcnow() + timedelta(days=7) to_encode.update({"iat": datetime.utcnow(), "exp": expire, "scope": "refresh_token"}) encoded_refresh_token = jwt.encode(to_encode, cls.SECRET_KEY, algorithm=cls.ALGORITHM) return encoded_refresh_token @classmethod async def get_current_user(cls, token: str = Depends(oauth2_scheme), db: Session = Depends(get_db)): """ The get_current_user function is a dependency that will be used in the protected endpoints. It takes a token as an argument and returns the user if it's valid, or raises an exception otherwise. Arguments: token (str): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: A user object if the token is valid """ payload = cls.token_decode(token) if payload.get("scope") == "access_token": email = payload.get("sub") if email is None: raise cls.credentials_exception else: raise cls.credentials_exception token_blacklisted = await repository_users.

is_blacklisted_token(token, db)

if token_blacklisted: raise cls.credentials_exception user = await repository_users.get_user_by_email(email, db) if user is None: raise cls.credentials_exception return user @classmethod async def decode_refresh_token(cls, refresh_token: str): """ The decode_refresh_token function is used to decode the refresh token. It takes a refresh_token as an argument and returns the email of the user if it's valid. If not, it raises an HTTPException with status code 401 (UNAUTHORIZED) and detail 'Could not validate credentials'. Arguments: refresh_token (str): Pass the refresh token to the function Returns: The email of the user that is associated with the refresh token """ payload = cls.token_decode(refresh_token) if payload['scope'] == 'refresh_token': email = payload['sub'] return email raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail='Invalid scope for token') @classmethod def create_email_token(cls, data: dict): """ The create_email_token function takes a dictionary of data and returns a token. The token is encoded with the SECRET_KEY, which is stored in the .env file. The algorithm used to encode the token is also stored in the .env file. Arguments: data (dict): Pass in the data that will be encoded into the token Returns: A token that is encoded with the user's email and a secret key """ to_encode = data.copy() expire = datetime.utcnow() + timedelta(hours=1) to_encode.update({"iat": datetime.utcnow(), "exp": expire, "scope": "email_token"}) token = jwt.encode(to_encode, cls.SECRET_KEY, algorithm=cls.ALGORITHM) return token @classmethod def get_email_from_token(cls, token: str): """ The get_email_from_token function takes a token as an argument and returns the email associated with that token. It does this by decoding the JWT using our SECRET_KEY and ALGORITHM, then checking to make sure that it has a scope of 'email_token'. If so, it returns the email address from the payload's sub field. If not, it raises an HTTPException with status code 401 (Unauthorized) and detail message &quot;Invalid scope for token&quot;. If there is any other error in decoding or validating the JWT, we raise another HTTPException with status code 422 Arguments: token (str): Pass in the token that is sent to the user's email Returns: The email address associated with the token """ payload = cls.token_decode(token) if payload['scope'] == 'email_token': email = payload['sub'] return email raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail='Invalid scope for token') auth_service = Auth()

src/services/auth.py

last-war-photoshare-fastapi-67888ff

python

is_blacklisted_token(token, db)

from typing import List from fastapi import APIRouter, Depends, status, HTTPException, Path from src.database.models import UserRole from src.repository import tags as repository_tag from src.schemas.tags import TagResponse, TagModel from src.schemas.images import ImageResponse from sqlalchemy.orm import Session from src.database.db import get_db from src.services.roles import RoleAccess router = APIRouter(prefix='/tag', tags=['tags']) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.post("/{tags_string}", response_model=List[TagResponse], dependencies=[Depends(allowed_operation_post)], status_code=status.HTTP_201_CREATED) async def create_tags(tags_string: str, db: Session = Depends(get_db)): """ create new tag from string find # and separated by spaces Arguments: tags_string (str): string to parse db (Session): SQLAlchemy session object for accessing the database Returns: List[Tag]: new tags list """ tag = await repository_tag.create_tags(tags_string, db) return tag @router.get("/image/{tag_name}", response_model=List[ImageResponse], dependencies=[Depends(allowed_operation_get)]) async def get_images_by_tag(tag_name: str, limit: int = 10, offset: int = 0, db: Session = Depends(get_db)): """ route to get images by tag name Arguments: offset (int): number of tags to skip in the search limit (int): maximum number of tags to retrieve tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: List[Image] | None: a list of Image or None if no matching tag were found """ tag = await repository_tag.get_images_by_tag(tag_name, limit, offset, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.get("/{tag_name}", response_model=TagResponse, dependencies=[Depends(allowed_operation_get)]) async def get_one(tag_name: str, db: Session = Depends(get_db)): """ route to get tag object by tag name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.put("/{tag_id}", response_model=TagResponse, dependencies=[Depends(allowed_operation_put)]) async def update_tag(body: TagModel, tag_id: int = Path(ge=1), db: Session = Depends(get_db)): """ The update_tag function updates a tag in the database. The function takes an id and a body as input, and returns the updated tag. If no tag is found with that id, it raises an HTTP 404 error. Arguments: body (TagModel): all need field to update tag_id (int): Find the tag to be deleted db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag_by_id(tag_id, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') edit_tag = await repository_tag.edit_tag(tag, body, db) return edit_tag @router.delete("/{tag_name}", dependencies=[Depends(allowed_operation_delete)], status_code=status.HTTP_204_NO_CONTENT) async def delete(tag_name: str, db: Session = Depends(get_db)): """ route to delete tag finded by name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: None """ tag = await repository_tag.

delete_tag(tag_name, db)

if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return None

src/routes/tags.py

last-war-photoshare-fastapi-67888ff

python

delete_tag(tag_name, db)

from fastapi import APIRouter, Depends, status, UploadFile, File, HTTPException from sqlalchemy.orm import Session from src.database.db import get_db from src.database.models import User, UserRole, BlacklistToken from src.repository import users as repository_users from src.services.auth import auth_service from src.schemas.users import UserResponse, UserChangeRole, UserUpdate, UserUpdateAdmin, UserShow from src.services.cloud_image import CloudImage from src.services.roles import RoleAccess router = APIRouter(prefix="/users", tags=["users"]) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.get("/me/", response_model=UserResponse) async def read_users_me(current_user: User = Depends(auth_service.get_current_user)): """ The read_users_me function is a GET request that returns the current user's information. It requires authentication, and it uses the auth_service to get the current user. Arguments: current_user (User): the current user attempting to delete the comment Returns: User: The current user object """ return current_user @router.patch('/avatar', response_model=UserResponse) async def update_avatar_user(file: UploadFile = File(), current_user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ The update_avatar_user function updates the avatar of a user. Arguments: file (UploadFile): object with new role current_user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ public_id = CloudImage.generate_name_avatar(current_user.email) r = CloudImage.upload(file.file, public_id) src_url = CloudImage.get_url_for_avatar(public_id, r) user = await repository_users.

update_avatar(current_user.email, src_url, db)

return user @router.put("/update_user", response_model=UserUpdate) async def update_user( body: UserUpdate, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user Arguments: body (UserUpdate): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/update_user_by_admin", response_model=UserUpdateAdmin, dependencies=[Depends(allowed_operation_put)]) async def update_user_by_admin( body: UserUpdateAdmin, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user just for admin access Arguments: body (UserUpdateAdmin): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user_by_admin(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/change_role", response_model=UserChangeRole, dependencies=[Depends(allowed_operation_put)]) async def change_role(body: UserChangeRole, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Change the role of a user Arguments: body (UserChangeRole): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.change_role(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/ban_user", response_model=UserResponse, dependencies=[Depends(allowed_operation_put)]) async def ban_user(user_id: int, db: Session = Depends(get_db)): """ Take user to ban list Arguments: user_id (int): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database Returns: User: banned user """ ban = await repository_users.ban_user(user_id, db) if ban is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return ban @router.get("/user/{login}", response_model=UserShow) async def read_user_profile_by_username(login: str, db: Session = Depends(get_db), current_user: User = Depends(auth_service.get_current_user)): """ The function takes in the login as an argument and returns the user profile if it exists. Arguments: login (str): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database current_user (User): the current user Returns: User: A userprofile object """ user_profile = await repository_users.get_user_profile(login, db) if user_profile is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user_profile

src/routes/users.py

last-war-photoshare-fastapi-67888ff

python

update_avatar(current_user.email, src_url, db)

from fastapi import Depends, HTTPException, status, APIRouter, Security, Request from fastapi.security import HTTPAuthorizationCredentials, HTTPBearer, OAuth2PasswordRequestForm from sqlalchemy.orm import Session from src.database.db import get_db from src.schemas.users import UserModel, UserResponse, TokenModel from src.repository import users as repository_users from src.services.auth import auth_service router = APIRouter(prefix="/auth", tags=['auth']) security = HTTPBearer() @router.post("/signup", response_model=UserResponse, status_code=status.HTTP_201_CREATED) async def signup(body: UserModel, request: Request, db: Session = Depends(get_db)): """ The signup function creates a new user in the database. It takes a UserModel object as input, which is validated by pydantic. The password is hashed using bcrypt and stored in the database. A background task sends an email to the user with their username. Arguments: body (UserModel): Pass the data from the request body to the function db (Session): SQLAlchemy session object for accessing the database request (Request): Get the base_url of the application Returns: User: The created user """ exist_user = await repository_users.

get_user_by_email(body.email, db)

if exist_user: raise HTTPException(status_code=status.HTTP_409_CONFLICT, detail="Account already exists") body.password_checksum = auth_service.pwd_context.hash(body.password_checksum) new_user = await repository_users.create_user(body, db) return new_user @router.post("/login", response_model=TokenModel) async def login(body: OAuth2PasswordRequestForm = Depends(), db: Session = Depends(get_db)): """ The login function is used to authenticate a user. It takes the username and password from the request body, verifies them against the database, and returns an access token if successful. Arguments: body (OAuth2PasswordRequestForm): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token / refresh_token / token_type """ user = await repository_users.get_user_by_email(body.username, db) if user is None: raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid email") if not user.is_active: raise HTTPException(status_code=status.HTTP_403_FORBIDDEN, detail="User is inactive") if not auth_service.pwd_context.verify(body.password, user.password_checksum): raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid password") # Generate JWT access_token = await auth_service.create_access_token(data={"sub": user.email}) refresh_token = await auth_service.create_refresh_token(data={"sub": user.email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"} @router.post("/logout") async def logout(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db), current_user: UserModel = Depends(auth_service.get_current_user)): """ The logout function is used to logout a user. It takes the credentials, add access token to blacklist, and returns massage. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database current_user (UserModel): the current user Returns: dict: JSON message """ token = credentials.credentials await repository_users.add_to_blacklist(token, db) return {"message": "USER_IS_LOGOUT"} @router.get('/refresh_token', response_model=TokenModel) async def refresh_token(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db)): """ The refresh_token function is used to refresh the access token. The function takes in a refresh token and returns an access_token, a new refresh_token, and the type of token. If the user's current refresh_token does not match what was passed into this function then it will return an error. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token - refresh_token - token_type """ token = credentials.credentials email = await auth_service.decode_refresh_token(token) user = await repository_users.get_user_by_email(email, db) if user.refresh_token != token: await repository_users.update_token(user, None, db) raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid refresh token") access_token = await auth_service.create_access_token(data={"sub": email}) refresh_token = await auth_service.create_refresh_token(data={"sub": email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"}

src/routes/auth.py

last-war-photoshare-fastapi-67888ff

python

get_user_by_email(body.email, db)

from typing import List from fastapi import APIRouter, Depends, status, HTTPException, Path from src.database.models import UserRole from src.repository import tags as repository_tag from src.schemas.tags import TagResponse, TagModel from src.schemas.images import ImageResponse from sqlalchemy.orm import Session from src.database.db import get_db from src.services.roles import RoleAccess router = APIRouter(prefix='/tag', tags=['tags']) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.post("/{tags_string}", response_model=List[TagResponse], dependencies=[Depends(allowed_operation_post)], status_code=status.HTTP_201_CREATED) async def create_tags(tags_string: str, db: Session = Depends(get_db)): """ create new tag from string find # and separated by spaces Arguments: tags_string (str): string to parse db (Session): SQLAlchemy session object for accessing the database Returns: List[Tag]: new tags list """ tag = await repository_tag.create_tags(tags_string, db) return tag @router.get("/image/{tag_name}", response_model=List[ImageResponse], dependencies=[Depends(allowed_operation_get)]) async def get_images_by_tag(tag_name: str, limit: int = 10, offset: int = 0, db: Session = Depends(get_db)): """ route to get images by tag name Arguments: offset (int): number of tags to skip in the search limit (int): maximum number of tags to retrieve tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: List[Image] | None: a list of Image or None if no matching tag were found """ tag = await repository_tag.get_images_by_tag(tag_name, limit, offset, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.get("/{tag_name}", response_model=TagResponse, dependencies=[Depends(allowed_operation_get)]) async def get_one(tag_name: str, db: Session = Depends(get_db)): """ route to get tag object by tag name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.put("/{tag_id}", response_model=TagResponse, dependencies=[Depends(allowed_operation_put)]) async def update_tag(body: TagModel, tag_id: int = Path(ge=1), db: Session = Depends(get_db)): """ The update_tag function updates a tag in the database. The function takes an id and a body as input, and returns the updated tag. If no tag is found with that id, it raises an HTTP 404 error. Arguments: body (TagModel): all need field to update tag_id (int): Find the tag to be deleted db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.

find_tag_by_id(tag_id, db)

if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') edit_tag = await repository_tag.edit_tag(tag, body, db) return edit_tag @router.delete("/{tag_name}", dependencies=[Depends(allowed_operation_delete)], status_code=status.HTTP_204_NO_CONTENT) async def delete(tag_name: str, db: Session = Depends(get_db)): """ route to delete tag finded by name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: None """ tag = await repository_tag.delete_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return None

src/routes/tags.py

last-war-photoshare-fastapi-67888ff

python

find_tag_by_id(tag_id, db)

from fastapi import Depends, HTTPException, status, APIRouter, Security, Request from fastapi.security import HTTPAuthorizationCredentials, HTTPBearer, OAuth2PasswordRequestForm from sqlalchemy.orm import Session from src.database.db import get_db from src.schemas.users import UserModel, UserResponse, TokenModel from src.repository import users as repository_users from src.services.auth import auth_service router = APIRouter(prefix="/auth", tags=['auth']) security = HTTPBearer() @router.post("/signup", response_model=UserResponse, status_code=status.HTTP_201_CREATED) async def signup(body: UserModel, request: Request, db: Session = Depends(get_db)): """ The signup function creates a new user in the database. It takes a UserModel object as input, which is validated by pydantic. The password is hashed using bcrypt and stored in the database. A background task sends an email to the user with their username. Arguments: body (UserModel): Pass the data from the request body to the function db (Session): SQLAlchemy session object for accessing the database request (Request): Get the base_url of the application Returns: User: The created user """ exist_user = await repository_users.get_user_by_email(body.email, db) if exist_user: raise HTTPException(status_code=status.HTTP_409_CONFLICT, detail="Account already exists") body.password_checksum = auth_service.pwd_context.hash(body.password_checksum) new_user = await repository_users.create_user(body, db) return new_user @router.post("/login", response_model=TokenModel) async def login(body: OAuth2PasswordRequestForm = Depends(), db: Session = Depends(get_db)): """ The login function is used to authenticate a user. It takes the username and password from the request body, verifies them against the database, and returns an access token if successful. Arguments: body (OAuth2PasswordRequestForm): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token / refresh_token / token_type """ user = await repository_users.get_user_by_email(body.username, db) if user is None: raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid email") if not user.is_active: raise HTTPException(status_code=status.HTTP_403_FORBIDDEN, detail="User is inactive") if not auth_service.pwd_context.verify(body.password, user.password_checksum): raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid password") # Generate JWT access_token = await auth_service.

create_access_token(data={"sub": user.email})

refresh_token = await auth_service.create_refresh_token(data={"sub": user.email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"} @router.post("/logout") async def logout(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db), current_user: UserModel = Depends(auth_service.get_current_user)): """ The logout function is used to logout a user. It takes the credentials, add access token to blacklist, and returns massage. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database current_user (UserModel): the current user Returns: dict: JSON message """ token = credentials.credentials await repository_users.add_to_blacklist(token, db) return {"message": "USER_IS_LOGOUT"} @router.get('/refresh_token', response_model=TokenModel) async def refresh_token(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db)): """ The refresh_token function is used to refresh the access token. The function takes in a refresh token and returns an access_token, a new refresh_token, and the type of token. If the user's current refresh_token does not match what was passed into this function then it will return an error. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token - refresh_token - token_type """ token = credentials.credentials email = await auth_service.decode_refresh_token(token) user = await repository_users.get_user_by_email(email, db) if user.refresh_token != token: await repository_users.update_token(user, None, db) raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid refresh token") access_token = await auth_service.create_access_token(data={"sub": email}) refresh_token = await auth_service.create_refresh_token(data={"sub": email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"}

src/routes/auth.py

last-war-photoshare-fastapi-67888ff

python

create_access_token(data={"sub": user.email})

from fastapi import APIRouter, Depends, status, UploadFile, File, HTTPException from sqlalchemy.orm import Session from src.database.db import get_db from src.database.models import User, UserRole, BlacklistToken from src.repository import users as repository_users from src.services.auth import auth_service from src.schemas.users import UserResponse, UserChangeRole, UserUpdate, UserUpdateAdmin, UserShow from src.services.cloud_image import CloudImage from src.services.roles import RoleAccess router = APIRouter(prefix="/users", tags=["users"]) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.get("/me/", response_model=UserResponse) async def read_users_me(current_user: User = Depends(auth_service.get_current_user)): """ The read_users_me function is a GET request that returns the current user's information. It requires authentication, and it uses the auth_service to get the current user. Arguments: current_user (User): the current user attempting to delete the comment Returns: User: The current user object """ return current_user @router.patch('/avatar', response_model=UserResponse) async def update_avatar_user(file: UploadFile = File(), current_user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ The update_avatar_user function updates the avatar of a user. Arguments: file (UploadFile): object with new role current_user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ public_id = CloudImage.generate_name_avatar(current_user.email) r = CloudImage.upload(file.file, public_id) src_url = CloudImage.get_url_for_avatar(public_id, r) user = await repository_users.update_avatar(current_user.email, src_url, db) return user @router.put("/update_user", response_model=UserUpdate) async def update_user( body: UserUpdate, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user Arguments: body (UserUpdate): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.

update_user(body, user, db)

if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/update_user_by_admin", response_model=UserUpdateAdmin, dependencies=[Depends(allowed_operation_put)]) async def update_user_by_admin( body: UserUpdateAdmin, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user just for admin access Arguments: body (UserUpdateAdmin): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user_by_admin(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/change_role", response_model=UserChangeRole, dependencies=[Depends(allowed_operation_put)]) async def change_role(body: UserChangeRole, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Change the role of a user Arguments: body (UserChangeRole): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.change_role(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/ban_user", response_model=UserResponse, dependencies=[Depends(allowed_operation_put)]) async def ban_user(user_id: int, db: Session = Depends(get_db)): """ Take user to ban list Arguments: user_id (int): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database Returns: User: banned user """ ban = await repository_users.ban_user(user_id, db) if ban is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return ban @router.get("/user/{login}", response_model=UserShow) async def read_user_profile_by_username(login: str, db: Session = Depends(get_db), current_user: User = Depends(auth_service.get_current_user)): """ The function takes in the login as an argument and returns the user profile if it exists. Arguments: login (str): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database current_user (User): the current user Returns: User: A userprofile object """ user_profile = await repository_users.get_user_profile(login, db) if user_profile is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user_profile

src/routes/users.py

last-war-photoshare-fastapi-67888ff

python

update_user(body, user, db)

from fastapi import Depends, HTTPException, status, APIRouter, Security, Request from fastapi.security import HTTPAuthorizationCredentials, HTTPBearer, OAuth2PasswordRequestForm from sqlalchemy.orm import Session from src.database.db import get_db from src.schemas.users import UserModel, UserResponse, TokenModel from src.repository import users as repository_users from src.services.auth import auth_service router = APIRouter(prefix="/auth", tags=['auth']) security = HTTPBearer() @router.post("/signup", response_model=UserResponse, status_code=status.HTTP_201_CREATED) async def signup(body: UserModel, request: Request, db: Session = Depends(get_db)): """ The signup function creates a new user in the database. It takes a UserModel object as input, which is validated by pydantic. The password is hashed using bcrypt and stored in the database. A background task sends an email to the user with their username. Arguments: body (UserModel): Pass the data from the request body to the function db (Session): SQLAlchemy session object for accessing the database request (Request): Get the base_url of the application Returns: User: The created user """ exist_user = await repository_users.get_user_by_email(body.email, db) if exist_user: raise HTTPException(status_code=status.HTTP_409_CONFLICT, detail="Account already exists") body.password_checksum = auth_service.pwd_context.hash(body.password_checksum) new_user = await repository_users.create_user(body, db) return new_user @router.post("/login", response_model=TokenModel) async def login(body: OAuth2PasswordRequestForm = Depends(), db: Session = Depends(get_db)): """ The login function is used to authenticate a user. It takes the username and password from the request body, verifies them against the database, and returns an access token if successful. Arguments: body (OAuth2PasswordRequestForm): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token / refresh_token / token_type """ user = await repository_users.get_user_by_email(body.username, db) if user is None: raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid email") if not user.is_active: raise HTTPException(status_code=status.HTTP_403_FORBIDDEN, detail="User is inactive") if not auth_service.pwd_context.verify(body.password, user.password_checksum): raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid password") # Generate JWT access_token = await auth_service.create_access_token(data={"sub": user.email}) refresh_token = await auth_service.create_refresh_token(data={"sub": user.email}) await repository_users.

update_token(user, refresh_token, db)

return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"} @router.post("/logout") async def logout(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db), current_user: UserModel = Depends(auth_service.get_current_user)): """ The logout function is used to logout a user. It takes the credentials, add access token to blacklist, and returns massage. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database current_user (UserModel): the current user Returns: dict: JSON message """ token = credentials.credentials await repository_users.add_to_blacklist(token, db) return {"message": "USER_IS_LOGOUT"} @router.get('/refresh_token', response_model=TokenModel) async def refresh_token(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db)): """ The refresh_token function is used to refresh the access token. The function takes in a refresh token and returns an access_token, a new refresh_token, and the type of token. If the user's current refresh_token does not match what was passed into this function then it will return an error. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token - refresh_token - token_type """ token = credentials.credentials email = await auth_service.decode_refresh_token(token) user = await repository_users.get_user_by_email(email, db) if user.refresh_token != token: await repository_users.update_token(user, None, db) raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid refresh token") access_token = await auth_service.create_access_token(data={"sub": email}) refresh_token = await auth_service.create_refresh_token(data={"sub": email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"}

src/routes/auth.py

last-war-photoshare-fastapi-67888ff

python

update_token(user, refresh_token, db)

from fastapi import Depends, HTTPException, status, APIRouter, Security, Request from fastapi.security import HTTPAuthorizationCredentials, HTTPBearer, OAuth2PasswordRequestForm from sqlalchemy.orm import Session from src.database.db import get_db from src.schemas.users import UserModel, UserResponse, TokenModel from src.repository import users as repository_users from src.services.auth import auth_service router = APIRouter(prefix="/auth", tags=['auth']) security = HTTPBearer() @router.post("/signup", response_model=UserResponse, status_code=status.HTTP_201_CREATED) async def signup(body: UserModel, request: Request, db: Session = Depends(get_db)): """ The signup function creates a new user in the database. It takes a UserModel object as input, which is validated by pydantic. The password is hashed using bcrypt and stored in the database. A background task sends an email to the user with their username. Arguments: body (UserModel): Pass the data from the request body to the function db (Session): SQLAlchemy session object for accessing the database request (Request): Get the base_url of the application Returns: User: The created user """ exist_user = await repository_users.get_user_by_email(body.email, db) if exist_user: raise HTTPException(status_code=status.HTTP_409_CONFLICT, detail="Account already exists") body.password_checksum = auth_service.pwd_context.hash(body.password_checksum) new_user = await repository_users.create_user(body, db) return new_user @router.post("/login", response_model=TokenModel) async def login(body: OAuth2PasswordRequestForm = Depends(), db: Session = Depends(get_db)): """ The login function is used to authenticate a user. It takes the username and password from the request body, verifies them against the database, and returns an access token if successful. Arguments: body (OAuth2PasswordRequestForm): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token / refresh_token / token_type """ user = await repository_users.get_user_by_email(body.username, db) if user is None: raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid email") if not user.is_active: raise HTTPException(status_code=status.HTTP_403_FORBIDDEN, detail="User is inactive") if not auth_service.pwd_context.verify(body.password, user.password_checksum): raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid password") # Generate JWT access_token = await auth_service.create_access_token(data={"sub": user.email}) refresh_token = await auth_service.create_refresh_token(data={"sub": user.email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"} @router.post("/logout") async def logout(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db), current_user: UserModel = Depends(auth_service.get_current_user)): """ The logout function is used to logout a user. It takes the credentials, add access token to blacklist, and returns massage. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database current_user (UserModel): the current user Returns: dict: JSON message """ token = credentials.credentials await repository_users.add_to_blacklist(token, db) return {"message": "USER_IS_LOGOUT"} @router.get('/refresh_token', response_model=TokenModel) async def refresh_token(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db)): """ The refresh_token function is used to refresh the access token. The function takes in a refresh token and returns an access_token, a new refresh_token, and the type of token. If the user's current refresh_token does not match what was passed into this function then it will return an error. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token - refresh_token - token_type """ token = credentials.credentials email = await auth_service.

decode_refresh_token(token)

user = await repository_users.get_user_by_email(email, db) if user.refresh_token != token: await repository_users.update_token(user, None, db) raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid refresh token") access_token = await auth_service.create_access_token(data={"sub": email}) refresh_token = await auth_service.create_refresh_token(data={"sub": email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"}

src/routes/auth.py

last-war-photoshare-fastapi-67888ff

python

decode_refresh_token(token)

from fastapi import APIRouter, Depends, status, UploadFile, File, HTTPException from sqlalchemy.orm import Session from src.database.db import get_db from src.database.models import User, UserRole, BlacklistToken from src.repository import users as repository_users from src.services.auth import auth_service from src.schemas.users import UserResponse, UserChangeRole, UserUpdate, UserUpdateAdmin, UserShow from src.services.cloud_image import CloudImage from src.services.roles import RoleAccess router = APIRouter(prefix="/users", tags=["users"]) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.get("/me/", response_model=UserResponse) async def read_users_me(current_user: User = Depends(auth_service.get_current_user)): """ The read_users_me function is a GET request that returns the current user's information. It requires authentication, and it uses the auth_service to get the current user. Arguments: current_user (User): the current user attempting to delete the comment Returns: User: The current user object """ return current_user @router.patch('/avatar', response_model=UserResponse) async def update_avatar_user(file: UploadFile = File(), current_user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ The update_avatar_user function updates the avatar of a user. Arguments: file (UploadFile): object with new role current_user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ public_id = CloudImage.generate_name_avatar(current_user.email) r = CloudImage.upload(file.file, public_id) src_url = CloudImage.get_url_for_avatar(public_id, r) user = await repository_users.update_avatar(current_user.email, src_url, db) return user @router.put("/update_user", response_model=UserUpdate) async def update_user( body: UserUpdate, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user Arguments: body (UserUpdate): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/update_user_by_admin", response_model=UserUpdateAdmin, dependencies=[Depends(allowed_operation_put)]) async def update_user_by_admin( body: UserUpdateAdmin, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user just for admin access Arguments: body (UserUpdateAdmin): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user_by_admin(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/change_role", response_model=UserChangeRole, dependencies=[Depends(allowed_operation_put)]) async def change_role(body: UserChangeRole, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Change the role of a user Arguments: body (UserChangeRole): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.change_role(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/ban_user", response_model=UserResponse, dependencies=[Depends(allowed_operation_put)]) async def ban_user(user_id: int, db: Session = Depends(get_db)): """ Take user to ban list Arguments: user_id (int): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database Returns: User: banned user """ ban = await repository_users.ban_user(user_id, db) if ban is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return ban @router.get("/user/{login}", response_model=UserShow) async def read_user_profile_by_username(login: str, db: Session = Depends(get_db), current_user: User = Depends(auth_service.get_current_user)): """ The function takes in the login as an argument and returns the user profile if it exists. Arguments: login (str): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database current_user (User): the current user Returns: User: A userprofile object """ user_profile = await repository_users.

get_user_profile(login, db)

if user_profile is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user_profile

src/routes/users.py

last-war-photoshare-fastapi-67888ff

python

get_user_profile(login, db)

from fastapi import APIRouter, Depends, status, UploadFile, File, HTTPException from sqlalchemy.orm import Session from src.database.db import get_db from src.database.models import User, UserRole, BlacklistToken from src.repository import users as repository_users from src.services.auth import auth_service from src.schemas.users import UserResponse, UserChangeRole, UserUpdate, UserUpdateAdmin, UserShow from src.services.cloud_image import CloudImage from src.services.roles import RoleAccess router = APIRouter(prefix="/users", tags=["users"]) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.get("/me/", response_model=UserResponse) async def read_users_me(current_user: User = Depends(auth_service.get_current_user)): """ The read_users_me function is a GET request that returns the current user's information. It requires authentication, and it uses the auth_service to get the current user. Arguments: current_user (User): the current user attempting to delete the comment Returns: User: The current user object """ return current_user @router.patch('/avatar', response_model=UserResponse) async def update_avatar_user(file: UploadFile = File(), current_user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ The update_avatar_user function updates the avatar of a user. Arguments: file (UploadFile): object with new role current_user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ public_id = CloudImage.

generate_name_avatar(current_user.email)

r = CloudImage.upload(file.file, public_id) src_url = CloudImage.get_url_for_avatar(public_id, r) user = await repository_users.update_avatar(current_user.email, src_url, db) return user @router.put("/update_user", response_model=UserUpdate) async def update_user( body: UserUpdate, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user Arguments: body (UserUpdate): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/update_user_by_admin", response_model=UserUpdateAdmin, dependencies=[Depends(allowed_operation_put)]) async def update_user_by_admin( body: UserUpdateAdmin, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user just for admin access Arguments: body (UserUpdateAdmin): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user_by_admin(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/change_role", response_model=UserChangeRole, dependencies=[Depends(allowed_operation_put)]) async def change_role(body: UserChangeRole, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Change the role of a user Arguments: body (UserChangeRole): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.change_role(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/ban_user", response_model=UserResponse, dependencies=[Depends(allowed_operation_put)]) async def ban_user(user_id: int, db: Session = Depends(get_db)): """ Take user to ban list Arguments: user_id (int): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database Returns: User: banned user """ ban = await repository_users.ban_user(user_id, db) if ban is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return ban @router.get("/user/{login}", response_model=UserShow) async def read_user_profile_by_username(login: str, db: Session = Depends(get_db), current_user: User = Depends(auth_service.get_current_user)): """ The function takes in the login as an argument and returns the user profile if it exists. Arguments: login (str): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database current_user (User): the current user Returns: User: A userprofile object """ user_profile = await repository_users.get_user_profile(login, db) if user_profile is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user_profile

src/routes/users.py

last-war-photoshare-fastapi-67888ff

python

generate_name_avatar(current_user.email)

from fastapi import APIRouter, Depends, status, UploadFile, File, HTTPException from sqlalchemy.orm import Session from src.database.db import get_db from src.database.models import User, UserRole, BlacklistToken from src.repository import users as repository_users from src.services.auth import auth_service from src.schemas.users import UserResponse, UserChangeRole, UserUpdate, UserUpdateAdmin, UserShow from src.services.cloud_image import CloudImage from src.services.roles import RoleAccess router = APIRouter(prefix="/users", tags=["users"]) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.get("/me/", response_model=UserResponse) async def read_users_me(current_user: User = Depends(auth_service.get_current_user)): """ The read_users_me function is a GET request that returns the current user's information. It requires authentication, and it uses the auth_service to get the current user. Arguments: current_user (User): the current user attempting to delete the comment Returns: User: The current user object """ return current_user @router.patch('/avatar', response_model=UserResponse) async def update_avatar_user(file: UploadFile = File(), current_user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ The update_avatar_user function updates the avatar of a user. Arguments: file (UploadFile): object with new role current_user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ public_id = CloudImage.generate_name_avatar(current_user.email) r = CloudImage.

upload(file.file, public_id)

src_url = CloudImage.get_url_for_avatar(public_id, r) user = await repository_users.update_avatar(current_user.email, src_url, db) return user @router.put("/update_user", response_model=UserUpdate) async def update_user( body: UserUpdate, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user Arguments: body (UserUpdate): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/update_user_by_admin", response_model=UserUpdateAdmin, dependencies=[Depends(allowed_operation_put)]) async def update_user_by_admin( body: UserUpdateAdmin, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Update user just for admin access Arguments: body (UserUpdateAdmin): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.update_user_by_admin(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/change_role", response_model=UserChangeRole, dependencies=[Depends(allowed_operation_put)]) async def change_role(body: UserChangeRole, user: User = Depends(auth_service.get_current_user), db: Session = Depends(get_db)): """ Change the role of a user Arguments: body (UserChangeRole): object with new role user (User): the current user db (Session): SQLAlchemy session object for accessing the database Returns: User: object after the change operation """ user = await repository_users.change_role(body, user, db) if user is None: raise HTTPException( status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user @router.put("/ban_user", response_model=UserResponse, dependencies=[Depends(allowed_operation_put)]) async def ban_user(user_id: int, db: Session = Depends(get_db)): """ Take user to ban list Arguments: user_id (int): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database Returns: User: banned user """ ban = await repository_users.ban_user(user_id, db) if ban is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return ban @router.get("/user/{login}", response_model=UserShow) async def read_user_profile_by_username(login: str, db: Session = Depends(get_db), current_user: User = Depends(auth_service.get_current_user)): """ The function takes in the login as an argument and returns the user profile if it exists. Arguments: login (str): Get the username from the url path db (Session): SQLAlchemy session object for accessing the database current_user (User): the current user Returns: User: A userprofile object """ user_profile = await repository_users.get_user_profile(login, db) if user_profile is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail="NOT_FOUND") return user_profile

src/routes/users.py

last-war-photoshare-fastapi-67888ff

python

upload(file.file, public_id)

from fastapi import Depends, HTTPException, status, APIRouter, Security, Request from fastapi.security import HTTPAuthorizationCredentials, HTTPBearer, OAuth2PasswordRequestForm from sqlalchemy.orm import Session from src.database.db import get_db from src.schemas.users import UserModel, UserResponse, TokenModel from src.repository import users as repository_users from src.services.auth import auth_service router = APIRouter(prefix="/auth", tags=['auth']) security = HTTPBearer() @router.post("/signup", response_model=UserResponse, status_code=status.HTTP_201_CREATED) async def signup(body: UserModel, request: Request, db: Session = Depends(get_db)): """ The signup function creates a new user in the database. It takes a UserModel object as input, which is validated by pydantic. The password is hashed using bcrypt and stored in the database. A background task sends an email to the user with their username. Arguments: body (UserModel): Pass the data from the request body to the function db (Session): SQLAlchemy session object for accessing the database request (Request): Get the base_url of the application Returns: User: The created user """ exist_user = await repository_users.get_user_by_email(body.email, db) if exist_user: raise HTTPException(status_code=status.HTTP_409_CONFLICT, detail="Account already exists") body.password_checksum = auth_service.pwd_context.hash(body.password_checksum) new_user = await repository_users.create_user(body, db) return new_user @router.post("/login", response_model=TokenModel) async def login(body: OAuth2PasswordRequestForm = Depends(), db: Session = Depends(get_db)): """ The login function is used to authenticate a user. It takes the username and password from the request body, verifies them against the database, and returns an access token if successful. Arguments: body (OAuth2PasswordRequestForm): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token / refresh_token / token_type """ user = await repository_users.get_user_by_email(body.username, db) if user is None: raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid email") if not user.is_active: raise HTTPException(status_code=status.HTTP_403_FORBIDDEN, detail="User is inactive") if not auth_service.pwd_context.verify(body.password, user.password_checksum): raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid password") # Generate JWT access_token = await auth_service.create_access_token(data={"sub": user.email}) refresh_token = await auth_service.create_refresh_token(data={"sub": user.email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"} @router.post("/logout") async def logout(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db), current_user: UserModel = Depends(auth_service.get_current_user)): """ The logout function is used to logout a user. It takes the credentials, add access token to blacklist, and returns massage. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database current_user (UserModel): the current user Returns: dict: JSON message """ token = credentials.credentials await repository_users.

add_to_blacklist(token, db)

return {"message": "USER_IS_LOGOUT"} @router.get('/refresh_token', response_model=TokenModel) async def refresh_token(credentials: HTTPAuthorizationCredentials = Security(security), db: Session = Depends(get_db)): """ The refresh_token function is used to refresh the access token. The function takes in a refresh token and returns an access_token, a new refresh_token, and the type of token. If the user's current refresh_token does not match what was passed into this function then it will return an error. Arguments: credentials (HTTPAuthorizationCredentials): Get the token from the request header db (Session): SQLAlchemy session object for accessing the database Returns: dict: JSON access_token - refresh_token - token_type """ token = credentials.credentials email = await auth_service.decode_refresh_token(token) user = await repository_users.get_user_by_email(email, db) if user.refresh_token != token: await repository_users.update_token(user, None, db) raise HTTPException(status_code=status.HTTP_401_UNAUTHORIZED, detail="Invalid refresh token") access_token = await auth_service.create_access_token(data={"sub": email}) refresh_token = await auth_service.create_refresh_token(data={"sub": email}) await repository_users.update_token(user, refresh_token, db) return {"access_token": access_token, "refresh_token": refresh_token, "token_type": "bearer"}

src/routes/auth.py

last-war-photoshare-fastapi-67888ff

python

add_to_blacklist(token, db)

import numpy as np import torch import util.torch_util as torch_util def build_net(input_dict, activation): conv_kernel_size = [8, 4, 3] conv_channels= [32, 64, 64] conv_stride = [4, 2, 1] fc_sizes = [512] assert(len(input_dict) == 1) obs_space = input_dict["obs"] in_channels = obs_space.shape[-3] in_size = np.array(obs_space.shape[-2:], dtype=np.float32) layers = [] if (obs_space.dtype == np.uint8): to_float_layer = torch_util.

UInt8ToFloat()

layers.append(to_float_layer) for i in range(len(conv_kernel_size)): kernel_size = conv_kernel_size[i] channels = conv_channels[i] stride = conv_stride[i] curr_layer = torch.nn.Conv2d(in_channels=in_channels, out_channels=channels, kernel_size=kernel_size, stride=stride) torch.nn.init.zeros_(curr_layer.bias) layers.append(curr_layer) layers.append(activation()) in_channels = channels in_size = np.ceil((in_size - kernel_size + 1) / stride) layers.append(torch.nn.Flatten(start_dim=-3, end_dim=-1)) in_size = int(np.prod(in_size) * channels) for out_size in fc_sizes: curr_layer = torch.nn.Linear(in_size, out_size) torch.nn.init.zeros_(curr_layer.bias) layers.append(curr_layer) layers.append(activation()) in_size = out_size net = torch.nn.Sequential(*layers) info = dict() return net, info

learning/nets/cnn_3conv_1fc_0.py

xbpeng-rl_assignments-cdb92a8

python

UInt8ToFloat()

import datetime from pytest import fixture from src.database.models import Tag, User, UserRole, Image from fastapi import status @fixture(scope='module') def token(client, user, session): """ The token function is used to create a user with admin privileges, and then log in as that user. This allows us to test the endpoints that require an admin token. Args: client: Make requests to the api user: Create a user in the database session: Make queries to the database Returns: A valid access token """ response = client.post("/api/auth/signup", json={"login": "deadpool", "email": "[email protected]", "password_checksum": "123456789"}) current_user: User = session.query(User).filter(User.email == user.get('email')).first() current_user.role = UserRole.Admin session.commit() response = client.post("/api/auth/login", data={ "username": "[email protected]", "password": "123456789"}, headers={'Content-Type': 'application/x-www-form-urlencoded'}) data = response.json() return data["access_token"] def test_create_tags(client, session, token): """ The test_create_tags function tests the POST /api/tag/{tags} endpoint. It does this by creating a new tag with the name &quot;test&quot; and then checking that it was created correctly. Args: client: Make requests to the api session: Query the database for tags token: Authenticate the user Returns: A 201 status code and a list of dictionaries containing the tag name """ tags_string = "test" response = client.post("/api/tag/%23test", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_201_CREATED, response.text expected_response = [{"id": 1, "tag_name": tags_string}] assert response.json() == expected_response tag = session.query(Tag).first() assert tag is not None assert tag.tag_name == tags_string def test_create_tags_not_authorization(client, session): """ The test_create_tags_not_authorization function tests that a user cannot create a tag without authorization. Args: client: Make requests to the api session: Create a new database session for the test Returns: A 401 unauthorized status code """ token = "not_valid" response = client.post("/api/tag/%23test", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_401_UNAUTHORIZED, response.text def test_create_tags_not_valid_tags(client, session, token): """ The test_create_tags_not_valid_tags function tests the POST /api/tag/ endpoint. It does this by sending a request to the endpoint with no data, and then checking that it returns a 404 status code. Args: client: Make requests to the api session: Rollback the database after each test token: Authenticate the user Returns: 404 """ response = client.post("/api/tag/", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_404_NOT_FOUND, response.text def test_get_images_by_tag(client, session, token): """ The test_get_images_by_tag function tests the get_images_by_tag function in the tag.py file. The test is successful if it returns a 200 status code and a list of images with tags that match the tag name. Args: client: Make requests to the api session: Create a new database session for the test token: Authenticate the user Returns: The images that have the tag """ tag_name = "test" limit = 10 offset = 0 tag = session.query(Tag).filter(Tag.id == 1).first() image = session.query(Image).filter(Image.id == 1).first() date = datetime.datetime.now() if image is None: image = Image( id=1, image_url="https://res.cloudinary.com/dy9mhswnt/image/upload/c_fill,g_faces,h_500,r_max,w_500" "/v1/photoshare/333db2aa2c097073b2e971767d76f543960ce141f4acf4671e82369de8526e9e", user_id=1, created_at=date, description="est_image_test_image_test_image_test_image", tags=[tag] ) session.add(image) session.commit() session.refresh(image) response = client.get("/api/tag/image/test", headers={"Authorization": f"Bearer {token}"}, params={"limit": limit, "offset": offset}) assert response.status_code == status.HTTP_200_OK, response.text expected_response = [ { "id": 1, "image_url": "https://res.cloudinary.com/dy9mhswnt/image/upload/c_fill,g_faces,h_500,r_max,w_500" "/v1/photoshare/333db2aa2c097073b2e971767d76f543960ce141f4acf4671e82369de8526e9e", "user_id": 1, "created_at": date, "updated_at": date, "description": "est_image_test_image_test_image_test_image", "tags": [ { "id": 1, "tag_name": "test" } ] } ] assert response.json()[0]["id"] == expected_response[0]["id"] assert response.json()[0]["image_url"] == expected_response[0]["image_url"] assert response.json()[0]["user_id"] == expected_response[0]["user_id"] assert response.json()[0]["description"] == expected_response[0]["description"] assert response.json()[0]["tags"][0]["id"] == expected_response[0]["tags"][0]["id"] assert response.json()[0]["tags"][0]["tag_name"] == expected_response[0]["tags"][0]["tag_name"] def test_get_images_by_tag_not_found_images(client, session, token): """ The test_get_images_by_tag_not_found_images function tests the get_images_by_tag function in the image.py file to ensure that it returns an empty list when no images are found with a given tag. Args: client: Make requests to the api session: Pass the database session to the test function token: Test the get_images_by_tag function with a valid token Returns: An empty list """ limit = 10 offset = 0 response = client.get("/api/tag/image/testnotfound", headers={"Authorization": f"Bearer {token}"}, params={"limit": limit, "offset": offset}) assert response.json() == [] def test_get_one_tag_found(client, session, token): """ The test_get_one_tag_found function tests the GET /api/tag/{tag_name} endpoint. It ensures that a tag can be retrieved by its name. Args: client: Make requests to the api session: Create a new session for the test token: Authenticate the user Returns: A 200 response with the tag data """ tag = { "id": 1, "tag_name": "test" } response = client.get("/api/tag/test", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_200_OK, response.text assert response.json() == tag def test_get_one_tag_not_found(client, session, token): """ The test_get_one_tag_not_found function tests the GET /api/tag/{id} endpoint. It ensures that a 404 status code is returned when an invalid tag id is passed in. Args: client: Send requests to the api session: Create a new session for the test token: Authenticate the user Returns: A 404 status code """ tag = None response = client.get("/api/tag/testnotfound", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_404_NOT_FOUND, response.text def test_update_tag_found(client, session, token): """ The test_update_tag_found function tests the update_tag function in the tag.py file. It does this by first creating a new tag name, then it uses that to create a response from the client using PUT method to update an existing tag with id 1 and header of token authorization. It then asserts that status code is 200 OK, which means the request was successful and returns what we expected (in this case, it should return updated information for id 1). Finally, it creates an expected response variable to compare against our actual response. Args: client: Make requests to the api session: Create a new session for the test token: Authenticate the user Returns: A 200 status code and the updated tag """ new_tag_name = "test_1" response = client.put("/api/tag/1", headers={"Authorization": f"Bearer {token}"}, json={"tag_name": new_tag_name}) assert response.status_code == status.HTTP_200_OK, response.text expected_response = {"id": 1, "tag_name": new_tag_name} assert response.json() == expected_response def test_update_tag_not_found(client, session, token): """ The test_update_tag_not_found function tests the update tag endpoint. It does this by first creating a new tag, then attempting to update it with an invalid id. The expected result is that the response status code should be 404 NOT FOUND. Args: client: Make requests to the api session: Create a new session for the test token: Authenticate the user Returns: A 404 status code """ new_tag_name = "test_1" response = client.put("/api/tag/999", headers={"Authorization": f"Bearer {token}"}, json={"tag_name": new_tag_name}) assert response.status_code == status.HTTP_404_NOT_FOUND, response.text def test_delete_tag_found(client, session, token): """ The test_delete_tag_found function tests the DELETE /api/tag/{tag_name} endpoint. It does so by first creating a tag with the name &quot;test&quot; and then deleting it. The test passes if the response status code is 204 No Content and if there are no tags in the database with that name. Args: client: Send a request to the server session: Access the database token: Pass in the token to the function Returns: A 204 status code """ response = client.delete("/api/tag/test_1", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_204_NO_CONTENT, response.text tag = session.query(Tag).filter(Tag.

tag_name == "test").first()

assert tag is None def test_delete_tag_not_found(client, session, token): """ The test_delete_tag_not_found function tests the DELETE /api/tag/{name} endpoint. It does so by first creating a tag, then deleting it, and finally attempting to delete it again. The final attempt should fail with a 404 Not Found error. Args: client: Make requests to the api session: Create a database session token: Authenticate the user Returns: A 404 status code """ response = client.delete("/api/tag/test", headers={"Authorization": f"Bearer {token}"}) assert response.status_code == status.HTTP_404_NOT_FOUND, response.text

tests/test_unit_route_tags.py

last-war-photoshare-fastapi-67888ff

python

tag_name == "test").first()

import gym import numpy as np import torch import envs.base_env as base_env import learning.base_agent as base_agent import learning.dqn_model as dqn_model import util.torch_util as torch_util class DQNAgent(base_agent.BaseAgent): NAME = "DQN" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) buffer_size = config["exp_buffer_size"] self._exp_buffer_length = int(buffer_size) self._exp_buffer_length = max(self._exp_buffer_length, self._steps_per_iter) self._updates_per_iter = config["updates_per_iter"] self._batch_size = config["batch_size"] self._init_samples = config["init_samples"] self._tar_net_update_iters = config["tar_net_update_iters"] self._exp_anneal_samples = config.get("exp_anneal_samples", np.inf) self._exp_prob_beg = config.get("exp_prob_beg", 1.0) self._exp_prob_end = config.get("exp_prob_end", 1.0) return def _build_model(self, config): model_config = config["model"] self._model = dqn_model.

DQNModel(model_config, self._env)

self._tar_model = dqn_model.DQNModel(model_config, self._env) for param in self._tar_model.parameters(): param.requires_grad = False self._sync_tar_model() return def _get_exp_buffer_length(self): return self._exp_buffer_length def _decide_action(self, obs, info): norm_obs = self._obs_norm.normalize(obs) qs = self._model.eval_q(norm_obs) if (self._mode == base_agent.AgentMode.TRAIN): a = self._sample_action(qs) elif (self._mode == base_agent.AgentMode.TEST): a = torch.argmax(qs, dim=-1) else: assert(False), "Unsupported agent mode: {}".format(self._mode) a_info = {} return a, a_info def _init_train(self): super()._init_train() self._collect_init_samples(self._init_samples) return def _collect_init_samples(self, samples): self.eval() self.set_mode(base_agent.AgentMode.TRAIN) self._rollout_train(samples) return def _update_model(self): self.train() train_info = dict() for i in range(self._updates_per_iter): batch = self._exp_buffer.sample(self._batch_size) loss_info = self._compute_loss(batch) self._optimizer.zero_grad() loss = loss_info["loss"] loss.backward() self._optimizer.step() torch_util.add_torch_dict(loss_info, train_info) torch_util.scale_torch_dict(1.0 / self._updates_per_iter, train_info) if (self._iter % self._tar_net_update_iters == 0): self._sync_tar_model() return train_info def _log_train_info(self, train_info, test_info, start_time): super()._log_train_info(train_info, test_info, start_time) self._logger.log("Exp_Prob", self._get_exp_prob()) return def _compute_loss(self, batch): r = batch["reward"] done = batch["done"] a = batch["action"] norm_obs = self._obs_norm.normalize(batch["obs"]) norm_next_obs = self._obs_norm.normalize(batch["next_obs"]) tar_vals = self._compute_tar_vals(r, norm_next_obs, done) q_loss = self._compute_q_loss(norm_obs, a, tar_vals) info = {"loss": q_loss} return info def _get_exp_prob(self): ''' TODO 1.1: Calculate the epsilon-greedy exploration probability given the current sample count. The exploration probability should start with a value of self._exp_prob_beg, and then linearly annealed to self._exp_prob_end over the course of self._exp_anneal_samples timesteps. ''' # placeholder prob = 1.0 return prob def _sample_action(self, qs): ''' TODO 1.2: Sample actions according to the Q-values of each action (qs). Implement epsilon greedy exploration, where the probability of sampling a random action (epsilon) is specified by self._get_exp_prob(). With probability 1 - epsilon, greedily select the action with the highest Q-value. With probability epsilon, select a random action uniformly from the set of possible actions. The output (a) should be a tensor containing the index of the selected action. ''' exp_prob = self._get_exp_prob() # placeholder a = torch.zeros(qs.shape[0], device=self._device, dtype=torch.int64) return a def _compute_tar_vals(self, r, norm_next_obs, done): ''' TODO 1.3: Compute target values for updating the Q-function. The inputs consist of a tensor of rewards (r), normalized observations at the next timestep (norm_next_obs), and done flags (done) indicating if a timestep is the last timestep of an episode. The output (tar_vals) should be a tensor containing the target values for each sample. The target values should be calculated using the target model (self._tar_model), not the main model (self._model). The Q-function can be queried by using the method eval_q(norm_obs). ''' # placeholder tar_vals = torch.zeros_like(r) return tar_vals def _compute_q_loss(self, norm_obs, a, tar_vals): ''' TODO 1.4: Compute a loss for updating the Q-function. The inputs consist of a tensor of normalized observations (norm_obs), a tensor containing the indices of actions selected at each timestep (a), and target values for each timestep (tar_vals). The output (loss) should be a scalar tensor containing the loss for updating the Q-function. ''' # placeholder loss = torch.zeros(1) return loss def _sync_tar_model(self): ''' TODO 1.5: Update the target model by copying the parameters from the main model. The main model is given by self._model, and the target model is given by self._tar_model. HINT: self._model.parameters() can be used to retrieve a list of tensors containing the parameters of a model. ''' return

a3/dqn_agent.py

xbpeng-rl_assignments-cdb92a8

python

DQNModel(model_config, self._env)

import gym import numpy as np import torch import envs.base_env as base_env import learning.base_agent as base_agent import learning.dqn_model as dqn_model import util.torch_util as torch_util class DQNAgent(base_agent.BaseAgent): NAME = "DQN" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) buffer_size = config["exp_buffer_size"] self._exp_buffer_length = int(buffer_size) self._exp_buffer_length = max(self._exp_buffer_length, self._steps_per_iter) self._updates_per_iter = config["updates_per_iter"] self._batch_size = config["batch_size"] self._init_samples = config["init_samples"] self._tar_net_update_iters = config["tar_net_update_iters"] self._exp_anneal_samples = config.get("exp_anneal_samples", np.inf) self._exp_prob_beg = config.get("exp_prob_beg", 1.0) self._exp_prob_end = config.get("exp_prob_end", 1.0) return def _build_model(self, config): model_config = config["model"] self._model = dqn_model.DQNModel(model_config, self._env) self._tar_model = dqn_model.DQNModel(model_config, self._env) for param in self._tar_model.parameters(): param.requires_grad = False self._sync_tar_model() return def _get_exp_buffer_length(self): return self._exp_buffer_length def _decide_action(self, obs, info): norm_obs = self._obs_norm.normalize(obs) qs = self._model.eval_q(norm_obs) if (self._mode == base_agent.AgentMode.TRAIN): a = self._sample_action(qs) elif (self._mode == base_agent.AgentMode.TEST): a = torch.argmax(qs, dim=-1) else: assert(False), "Unsupported agent mode: {}".format(self._mode) a_info = {} return a, a_info def _init_train(self): super()._init_train() self._collect_init_samples(self._init_samples) return def _collect_init_samples(self, samples): self.eval() self.set_mode(base_agent.AgentMode.TRAIN) self._rollout_train(samples) return def _update_model(self): self.train() train_info = dict() for i in range(self._updates_per_iter): batch = self._exp_buffer.sample(self._batch_size) loss_info = self._compute_loss(batch) self._optimizer.zero_grad() loss = loss_info["loss"] loss.backward() self._optimizer.step() torch_util.add_torch_dict(loss_info, train_info) torch_util.

scale_torch_dict(1.0 / self._updates_per_iter, train_info)

if (self._iter % self._tar_net_update_iters == 0): self._sync_tar_model() return train_info def _log_train_info(self, train_info, test_info, start_time): super()._log_train_info(train_info, test_info, start_time) self._logger.log("Exp_Prob", self._get_exp_prob()) return def _compute_loss(self, batch): r = batch["reward"] done = batch["done"] a = batch["action"] norm_obs = self._obs_norm.normalize(batch["obs"]) norm_next_obs = self._obs_norm.normalize(batch["next_obs"]) tar_vals = self._compute_tar_vals(r, norm_next_obs, done) q_loss = self._compute_q_loss(norm_obs, a, tar_vals) info = {"loss": q_loss} return info def _get_exp_prob(self): ''' TODO 1.1: Calculate the epsilon-greedy exploration probability given the current sample count. The exploration probability should start with a value of self._exp_prob_beg, and then linearly annealed to self._exp_prob_end over the course of self._exp_anneal_samples timesteps. ''' # placeholder prob = 1.0 return prob def _sample_action(self, qs): ''' TODO 1.2: Sample actions according to the Q-values of each action (qs). Implement epsilon greedy exploration, where the probability of sampling a random action (epsilon) is specified by self._get_exp_prob(). With probability 1 - epsilon, greedily select the action with the highest Q-value. With probability epsilon, select a random action uniformly from the set of possible actions. The output (a) should be a tensor containing the index of the selected action. ''' exp_prob = self._get_exp_prob() # placeholder a = torch.zeros(qs.shape[0], device=self._device, dtype=torch.int64) return a def _compute_tar_vals(self, r, norm_next_obs, done): ''' TODO 1.3: Compute target values for updating the Q-function. The inputs consist of a tensor of rewards (r), normalized observations at the next timestep (norm_next_obs), and done flags (done) indicating if a timestep is the last timestep of an episode. The output (tar_vals) should be a tensor containing the target values for each sample. The target values should be calculated using the target model (self._tar_model), not the main model (self._model). The Q-function can be queried by using the method eval_q(norm_obs). ''' # placeholder tar_vals = torch.zeros_like(r) return tar_vals def _compute_q_loss(self, norm_obs, a, tar_vals): ''' TODO 1.4: Compute a loss for updating the Q-function. The inputs consist of a tensor of normalized observations (norm_obs), a tensor containing the indices of actions selected at each timestep (a), and target values for each timestep (tar_vals). The output (loss) should be a scalar tensor containing the loss for updating the Q-function. ''' # placeholder loss = torch.zeros(1) return loss def _sync_tar_model(self): ''' TODO 1.5: Update the target model by copying the parameters from the main model. The main model is given by self._model, and the target model is given by self._tar_model. HINT: self._model.parameters() can be used to retrieve a list of tensors containing the parameters of a model. ''' return

a3/dqn_agent.py

xbpeng-rl_assignments-cdb92a8

python

scale_torch_dict(1.0 / self._updates_per_iter, train_info)

import argparse import numpy as np import os import sys import yaml import envs.env_builder as env_builder import learning.agent_builder as agent_builder import util.util as util def set_np_formatting(): np.set_printoptions(edgeitems=30, infstr='inf', linewidth=4000, nanstr='nan', precision=2, suppress=False, threshold=10000, formatter=None) return def load_args(argv): parser = argparse.ArgumentParser(description="Train or test control policies.") parser.add_argument("--rand_seed", dest="rand_seed", type=int, default=None) parser.add_argument("--mode", dest="mode", type=str, default="train") parser.add_argument("--visualize", dest="visualize", action="store_true", default=False) parser.add_argument("--env_config", dest="env_config") parser.add_argument("--agent_config", dest="agent_config") parser.add_argument("--device", dest="device", type=str, default="cpu") parser.add_argument("--log_file", dest="log_file", type=str, default="output/log.txt") parser.add_argument("--out_model_file", dest="out_model_file", type=str, default="output/model.pt") parser.add_argument("--int_output_dir", dest="int_output_dir", type=str, default="") parser.add_argument("--model_file", dest="model_file", type=str, default="") parser.add_argument("--max_samples", dest="max_samples", type=np.int64, default=np.iinfo(np.int64).max) parser.add_argument("--test_episodes", dest="test_episodes", type=np.int64, default=np.iinfo(np.int64).max) args = parser.parse_args() if (args.rand_seed is not None): util.

set_rand_seed(args.rand_seed)

return args def build_env(args, device, visualize): env_file = args.env_config env = env_builder.build_env(env_file, device, visualize) return env def build_agent(args, env, device): agent_file = args.agent_config agent = agent_builder.build_agent(agent_file, env, device) return agent def train(agent, max_samples, out_model_file, int_output_dir, log_file): agent.train_model(max_samples=max_samples, out_model_file=out_model_file, int_output_dir=int_output_dir, log_file=log_file) return def test(agent, test_episodes): result = agent.test_model(num_episodes=test_episodes) print("Mean Return: {}".format(result["mean_return"])) print("Mean Episode Length: {}".format(result["mean_ep_len"])) print("Episodes: {}".format(result["episodes"])) return result def create_output_dirs(out_model_file, int_output_dir): output_dir = os.path.dirname(out_model_file) if (output_dir != "" and (not os.path.exists(output_dir))): os.makedirs(output_dir, exist_ok=True) if (int_output_dir != "" and (not os.path.exists(int_output_dir))): os.makedirs(int_output_dir, exist_ok=True) return def main(argv): set_np_formatting() args = load_args(argv) mode = args.mode device = args.device visualize = args.visualize log_file = args.log_file out_model_file = args.out_model_file int_output_dir = args.int_output_dir model_file = args.model_file create_output_dirs(out_model_file, int_output_dir) env = build_env(args, device, visualize) agent = build_agent(args, env, device) if (model_file != ""): agent.load(model_file) if (mode == "train"): max_samples = args.max_samples train(agent=agent, max_samples=max_samples, out_model_file=out_model_file, int_output_dir=int_output_dir, log_file=log_file) elif (mode == "test"): test_episodes = args.test_episodes test(agent=agent, test_episodes=test_episodes) else: assert(False), "Unsupported mode: {}".format(mode) return if __name__ == "__main__": main(sys.argv)

run.py

xbpeng-rl_assignments-cdb92a8

python

set_rand_seed(args.rand_seed)

from typing import List from fastapi import APIRouter, Depends, status, HTTPException, Path from src.database.models import UserRole from src.repository import tags as repository_tag from src.schemas.tags import TagResponse, TagModel from src.schemas.images import ImageResponse from sqlalchemy.orm import Session from src.database.db import get_db from src.services.roles import RoleAccess router = APIRouter(prefix='/tag', tags=['tags']) allowed_operation_get = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_post = RoleAccess([UserRole.Admin, UserRole.Moderator, UserRole.User]) allowed_operation_put = RoleAccess([UserRole.Admin, UserRole.Moderator]) allowed_operation_delete = RoleAccess([UserRole.Admin]) @router.post("/{tags_string}", response_model=List[TagResponse], dependencies=[Depends(allowed_operation_post)], status_code=status.HTTP_201_CREATED) async def create_tags(tags_string: str, db: Session = Depends(get_db)): """ create new tag from string find # and separated by spaces Arguments: tags_string (str): string to parse db (Session): SQLAlchemy session object for accessing the database Returns: List[Tag]: new tags list """ tag = await repository_tag.create_tags(tags_string, db) return tag @router.get("/image/{tag_name}", response_model=List[ImageResponse], dependencies=[Depends(allowed_operation_get)]) async def get_images_by_tag(tag_name: str, limit: int = 10, offset: int = 0, db: Session = Depends(get_db)): """ route to get images by tag name Arguments: offset (int): number of tags to skip in the search limit (int): maximum number of tags to retrieve tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: List[Image] | None: a list of Image or None if no matching tag were found """ tag = await repository_tag.get_images_by_tag(tag_name, limit, offset, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.get("/{tag_name}", response_model=TagResponse, dependencies=[Depends(allowed_operation_get)]) async def get_one(tag_name: str, db: Session = Depends(get_db)): """ route to get tag object by tag name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return tag @router.put("/{tag_id}", response_model=TagResponse, dependencies=[Depends(allowed_operation_put)]) async def update_tag(body: TagModel, tag_id: int = Path(ge=1), db: Session = Depends(get_db)): """ The update_tag function updates a tag in the database. The function takes an id and a body as input, and returns the updated tag. If no tag is found with that id, it raises an HTTP 404 error. Arguments: body (TagModel): all need field to update tag_id (int): Find the tag to be deleted db (Session): SQLAlchemy session object for accessing the database Returns: Tag | None: Tag or None if no matching tag were found """ tag = await repository_tag.find_tag_by_id(tag_id, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') edit_tag = await repository_tag.

edit_tag(tag, body, db)

return edit_tag @router.delete("/{tag_name}", dependencies=[Depends(allowed_operation_delete)], status_code=status.HTTP_204_NO_CONTENT) async def delete(tag_name: str, db: Session = Depends(get_db)): """ route to delete tag finded by name Arguments: tag_name (str): tag name to found db (Session): SQLAlchemy session object for accessing the database Returns: None """ tag = await repository_tag.delete_tag(tag_name, db) if tag is None: raise HTTPException(status_code=status.HTTP_404_NOT_FOUND, detail='Not found') return None

src/routes/tags.py

last-war-photoshare-fastapi-67888ff

python

edit_tag(tag, body, db)

import numpy as np import torch import envs.base_env as base_env import learning.base_agent as base_agent import learning.pg_model as pg_model import util.torch_util as torch_util class PGAgent(base_agent.BaseAgent): NAME = "PG" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) self._batch_size = config["batch_size"] self._critic_update_epoch = config["critic_update_epoch"] self._norm_adv_clip = config["norm_adv_clip"] self._action_bound_weight = config["action_bound_weight"] return def _build_model(self, config): model_config = config["model"] self._model = pg_model.

PGModel(model_config, self._env)

return def _get_exp_buffer_length(self): return self._steps_per_iter def _build_exp_buffer(self, config): super()._build_exp_buffer(config) buffer_length = self._get_exp_buffer_length() tar_val_buffer = torch.zeros([buffer_length], device=self._device, dtype=torch.float) self._exp_buffer.add_buffer("tar_val", tar_val_buffer) adv_buffer = torch.zeros([buffer_length], device=self._device, dtype=torch.float) self._exp_buffer.add_buffer("adv", adv_buffer) norm_obs_buffer = torch.zeros_like(self._exp_buffer.get_data("obs")) self._exp_buffer.add_buffer("norm_obs", norm_obs_buffer) norm_action_buffer = torch.zeros_like(self._exp_buffer.get_data("action")) self._exp_buffer.add_buffer("norm_action", norm_action_buffer) return def _init_iter(self): super()._init_iter() self._exp_buffer.reset() return def _build_optimizer(self, config): actor_lr = float(config["actor_learning_rate"]) critic_lr = float(config["critic_learning_rate"]) actor_params = list(self._model._actor_layers.parameters())+list(self._model._action_dist.parameters()) actor_params_grad = [p for p in actor_params if p.requires_grad] self._actor_optimizer = torch.optim.SGD(actor_params_grad, actor_lr, momentum=0.9) critic_params = list(self._model._critic_layers.parameters())+list(self._model._critic_out.parameters()) critic_params_grad = [p for p in critic_params if p.requires_grad] self._critic_optimizer = torch.optim.SGD(critic_params_grad, critic_lr, momentum=0.9) return def _decide_action(self, obs, info): norm_obs = self._obs_norm.normalize(obs) norm_action_dist = self._model.eval_actor(norm_obs) if (self._mode == base_agent.AgentMode.TRAIN): norm_a = norm_action_dist.sample() elif (self._mode == base_agent.AgentMode.TEST): norm_a = norm_action_dist.mode else: assert(False), "Unsupported agent mode: {}".format(self._mode) norm_a = norm_a.detach() a = self._a_norm.unnormalize(norm_a) info = dict() return a, info def _build_train_data(self): self.eval() obs = self._exp_buffer.get_data("obs") r = self._exp_buffer.get_data("reward") done = self._exp_buffer.get_data("done") action = self._exp_buffer.get_data("action") norm_action = self._a_norm.normalize(action) norm_obs = self._obs_norm.normalize(obs) ret = self._calc_return(r, done) adv = self._calc_adv(norm_obs, ret) adv_std, adv_mean = torch.std_mean(adv) norm_adv = (adv - adv_mean) / torch.clamp_min(adv_std, 1e-5) norm_adv = torch.clamp(norm_adv, -self._norm_adv_clip, self._norm_adv_clip) self._exp_buffer.set_data("tar_val", ret) self._exp_buffer.set_data("adv", norm_adv) self._exp_buffer.set_data("norm_obs", norm_obs) self._exp_buffer.set_data("norm_action", norm_action) info = { "adv_mean": adv_mean, "adv_std": adv_std } return info def _update_model(self): self.train() num_samples = self._exp_buffer.get_sample_count() batch_size = self._batch_size num_batches = int(np.ceil(float(num_samples) / batch_size)) train_info = dict() for e in range(self._critic_update_epoch): for b in range(num_batches): batch = self._exp_buffer.sample(batch_size) critic_info = self._update_critic(batch) torch_util.add_torch_dict(critic_info, train_info) torch_util.scale_torch_dict(1.0 / num_batches, train_info) actor_batch = { "norm_obs": self._exp_buffer.get_data("norm_obs"), "norm_action": self._exp_buffer.get_data("norm_action"), "adv": self._exp_buffer.get_data("adv") } actor_info = self._update_actor(actor_batch) for key, data in actor_info.items(): train_info[key] = data return train_info def _update_critic(self, batch): norm_obs = batch["norm_obs"] tar_val = batch["tar_val"] loss = self._calc_critic_loss(norm_obs, tar_val) self._critic_optimizer.zero_grad() loss.backward() self._critic_optimizer.step() info = { "critic_loss": loss } return info def _update_actor(self, batch): norm_obs = batch["norm_obs"] norm_a = batch["norm_action"] adv = batch["adv"] loss = self._calc_actor_loss(norm_obs, norm_a, adv) info = { "actor_loss": loss } if (self._action_bound_weight != 0): a_dist = self._model.eval_actor(norm_obs) action_bound_loss = self._compute_action_bound_loss(a_dist) if (action_bound_loss is not None): action_bound_loss = torch.mean(action_bound_loss) loss += self._action_bound_weight * action_bound_loss info["action_bound_loss"] = action_bound_loss.detach() self._actor_optimizer.zero_grad() loss.backward() self._actor_optimizer.step() return info def _calc_return(self, r, done): ''' TODO 2.1: Given a tensor of per-timestep rewards (r), and a tensor (done) indicating if a timestep is the last timestep of an episode, Output a tensor (return_t) containing the return (i.e. reward-to-go) at each timestep. ''' # placeholder return_t = torch.zeros_like(r) return return_t def _calc_adv(self, norm_obs, ret): ''' TODO 2.2: Given the normalized observations (norm_obs) and the return at every timestep (ret), output the advantage at each timestep (adv). ''' # placeholder adv = torch.zeros_like(ret) return adv def _calc_critic_loss(self, norm_obs, tar_val): ''' TODO 2.3: Given the normalized observations (norm_obs) and the returns at every timestep (tar_val), compute a loss for updating the value function (critic). ''' # placeholder loss = torch.zeros(1) return loss def _calc_actor_loss(self, norm_obs, norm_a, adv): ''' TODO 2.4: Given the normalized observations (norm_obs), normalized actions (norm_a), and the advantage at every timestep (adv), compute a loss for updating the policy (actor). ''' # placeholder loss = torch.zeros(1) return loss

a2/pg_agent.py

xbpeng-rl_assignments-cdb92a8

python

PGModel(model_config, self._env)

import numpy as np import torch import learning.agent_builder as agent_builder import learning.base_agent as base_agent import learning.bc_model as bc_model import util.torch_util as torch_util class BCAgent(base_agent.BaseAgent): NAME = "BC" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) buffer_size = config["exp_buffer_size"] self._exp_buffer_length = max(buffer_size, self._steps_per_iter) self._batch_size = config["batch_size"] self._update_epochs = config["update_epochs"] return def _build_model(self, config): model_config = config["model"] self._model = bc_model.

BCModel(model_config, self._env)

self._build_expert(config) self._sync_normalizers() return def _build_expert(self, config): expert_config = config["expert_config"] expert = agent_builder.build_agent(expert_config, self._env, self._device) expert_model_file = config["expert_model_file"] assert(expert_model_file is not None) expert.load(expert_model_file) expert.set_mode(base_agent.AgentMode.TEST) # putting the expert in a list makes the expert's parameters invisible to the pytorch module self._experts = [expert] return def _sync_normalizers(self): expert = self._experts[0] self._obs_norm.load_state_dict(expert._obs_norm.state_dict()) self._a_norm.load_state_dict(expert._a_norm.state_dict()) return def _get_exp_buffer_length(self): return self._exp_buffer_length def _need_normalizer_update(self): return False def _build_exp_buffer(self, config): super()._build_exp_buffer(config) expert_a_buffer = torch.zeros_like(self._exp_buffer.get_data("action")) self._exp_buffer.add_buffer("expert_a", expert_a_buffer) return def _record_data_pre_step(self, obs, info, action, action_info): super()._record_data_pre_step(obs, info, action, action_info) self._exp_buffer.record("expert_a", action_info["expert_a"]) return def _update_model(self): self.train() num_samples = self._exp_buffer.get_sample_count() batch_size = self._batch_size num_batches = int(np.ceil(float(num_samples) / batch_size)) train_info = dict() for i in range(self._update_epochs): for b in range(num_batches): batch = self._exp_buffer.sample(batch_size) loss_info = self._compute_loss(batch) self._optimizer.zero_grad() loss = loss_info["loss"] loss.backward() self._optimizer.step() torch_util.add_torch_dict(loss_info, train_info) num_steps = self._update_epochs * num_batches torch_util.scale_torch_dict(1.0 / num_steps, train_info) return train_info def _compute_loss(self, batch): norm_obs = self._obs_norm.normalize(batch["obs"]) norm_expert_a = self._a_norm.normalize(batch["expert_a"]) actor_loss = self._compute_actor_loss(norm_obs, norm_expert_a) info = { "loss": actor_loss } return info def _eval_expert(self, obs): info = None expert = self._experts[0] expert_a, _ = expert._decide_action(obs, info) return expert_a def _decide_action(self, obs, info): ''' TODO 1.1: Implement code for sampling from the policy and querying the expert policy for the expert actions. ''' ## a) sample an action from the policy # placeholder a_space = self._env.get_action_space() a = torch.zeros(a_space.shape, device=self._device) ## b) query the expert for an action # placeholder a_space = self._env.get_action_space() expert_a = torch.zeros(a_space.shape, device=self._device) a_info = { "expert_a": expert_a } return a, a_info def _compute_actor_loss(self, norm_obs, norm_expert_a): ''' TODO 1.2: Implement code to calculate the loss for training the policy. ''' # placeholder loss = torch.zeros(1) return loss

a1/bc_agent.py

xbpeng-rl_assignments-cdb92a8

python

BCModel(model_config, self._env)

import numpy as np import torch import learning.agent_builder as agent_builder import learning.base_agent as base_agent import learning.bc_model as bc_model import util.torch_util as torch_util class BCAgent(base_agent.BaseAgent): NAME = "BC" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) buffer_size = config["exp_buffer_size"] self._exp_buffer_length = max(buffer_size, self._steps_per_iter) self._batch_size = config["batch_size"] self._update_epochs = config["update_epochs"] return def _build_model(self, config): model_config = config["model"] self._model = bc_model.BCModel(model_config, self._env) self._build_expert(config) self._sync_normalizers() return def _build_expert(self, config): expert_config = config["expert_config"] expert = agent_builder.

build_agent(expert_config, self._env, self._device)

expert_model_file = config["expert_model_file"] assert(expert_model_file is not None) expert.load(expert_model_file) expert.set_mode(base_agent.AgentMode.TEST) # putting the expert in a list makes the expert's parameters invisible to the pytorch module self._experts = [expert] return def _sync_normalizers(self): expert = self._experts[0] self._obs_norm.load_state_dict(expert._obs_norm.state_dict()) self._a_norm.load_state_dict(expert._a_norm.state_dict()) return def _get_exp_buffer_length(self): return self._exp_buffer_length def _need_normalizer_update(self): return False def _build_exp_buffer(self, config): super()._build_exp_buffer(config) expert_a_buffer = torch.zeros_like(self._exp_buffer.get_data("action")) self._exp_buffer.add_buffer("expert_a", expert_a_buffer) return def _record_data_pre_step(self, obs, info, action, action_info): super()._record_data_pre_step(obs, info, action, action_info) self._exp_buffer.record("expert_a", action_info["expert_a"]) return def _update_model(self): self.train() num_samples = self._exp_buffer.get_sample_count() batch_size = self._batch_size num_batches = int(np.ceil(float(num_samples) / batch_size)) train_info = dict() for i in range(self._update_epochs): for b in range(num_batches): batch = self._exp_buffer.sample(batch_size) loss_info = self._compute_loss(batch) self._optimizer.zero_grad() loss = loss_info["loss"] loss.backward() self._optimizer.step() torch_util.add_torch_dict(loss_info, train_info) num_steps = self._update_epochs * num_batches torch_util.scale_torch_dict(1.0 / num_steps, train_info) return train_info def _compute_loss(self, batch): norm_obs = self._obs_norm.normalize(batch["obs"]) norm_expert_a = self._a_norm.normalize(batch["expert_a"]) actor_loss = self._compute_actor_loss(norm_obs, norm_expert_a) info = { "loss": actor_loss } return info def _eval_expert(self, obs): info = None expert = self._experts[0] expert_a, _ = expert._decide_action(obs, info) return expert_a def _decide_action(self, obs, info): ''' TODO 1.1: Implement code for sampling from the policy and querying the expert policy for the expert actions. ''' ## a) sample an action from the policy # placeholder a_space = self._env.get_action_space() a = torch.zeros(a_space.shape, device=self._device) ## b) query the expert for an action # placeholder a_space = self._env.get_action_space() expert_a = torch.zeros(a_space.shape, device=self._device) a_info = { "expert_a": expert_a } return a, a_info def _compute_actor_loss(self, norm_obs, norm_expert_a): ''' TODO 1.2: Implement code to calculate the loss for training the policy. ''' # placeholder loss = torch.zeros(1) return loss

a1/bc_agent.py

xbpeng-rl_assignments-cdb92a8

python

build_agent(expert_config, self._env, self._device)

import abc import enum import gym import numpy as np import util.torch_util as torch_util class EnvMode(enum.Enum): TRAIN = 0 TEST = 1 class DoneFlags(enum.Enum): NULL = 0 FAIL = 1 SUCC = 2 TIME = 3 class BaseEnv(abc.ABC): NAME = "base" def __init__(self, visualize): self._mode = EnvMode.TRAIN self._visualize = visualize self._action_space = None return @abc.abstractmethod def reset(self, env_ids=None): return @abc.abstractmethod def step(self, action): return def get_obs_space(self): obs, _ = self.reset() obs_shape = list(obs.shape) obs_dtype = torch_util.

torch_dtype_to_numpy(obs.dtype)

obs_space = gym.spaces.Box( low=-np.inf, high=np.inf, shape=obs_shape, dtype=obs_dtype, ) return obs_space def get_action_space(self): return self._action_space def set_mode(self, mode): self._mode = mode return def get_num_envs(self): return int(1) def get_reward_bounds(self): return (-np.inf, np.inf) def get_reward_fail(self): return 0.0 def get_reward_succ(self): return 0.0 def get_visualize(self): return self._visualize

envs/base_env.py

xbpeng-rl_assignments-cdb92a8

python

torch_dtype_to_numpy(obs.dtype)

import numpy as np import torch import learning.base_agent as base_agent import learning.cem_model as cem_model class CEMAgent(base_agent.BaseAgent): NAME = "CEM" def __init__(self, config, env, device): super().__init__(config, env, device) self._param_mean = None self._param_std = None self._best_return = None self._best_params = None return def _load_params(self, config): super()._load_params(config) self._population_size = config["population_size"] self._elite_ratio = config["elite_ratio"] self._eps_per_candidate = config["eps_per_candidate"] self._min_param_std = config["min_param_std"] return def _build_optimizer(self, config): return def _init_train(self): super()._init_train() self._param_mean = torch.nn.utils.parameters_to_vector(self._model.parameters()) self._param_std = 0.5 * torch.ones_like(self._param_mean) self._best_return = None self._best_params = None return def _build_model(self, config): model_config = config["model"] self._model = cem_model.

CEMModel(model_config, self._env)

return def _decide_action(self, obs, info): norm_obs = self._obs_norm.normalize(obs) norm_action_dist = self._model.eval_actor(norm_obs) norm_a = norm_action_dist.mode norm_a = norm_a.detach() a = self._a_norm.unnormalize(norm_a) info = dict() return a, info def _update_sample_count(self): return self._sample_count def _train_iter(self): candidates = self._sample_candidates(self._population_size) rets, ep_lens = self._eval_candidates(candidates) curr_best_idx = np.argmax(rets) curr_best_ret = rets[curr_best_idx] if ((self._best_params is None) or (curr_best_ret > self._best_return)): self._best_params = torch.clone(candidates[curr_best_idx]) self._best_return = curr_best_ret num_samples = self._eps_per_candidate * np.sum(ep_lens) self._sample_count += num_samples new_mean, new_std = self._compute_new_params(candidates, rets) self._param_mean[:] = new_mean self._param_std[:] = new_std torch.nn.utils.vector_to_parameters(self._best_params, self._model.parameters()) train_return = np.mean(rets) train_ep_len = np.mean(ep_lens) num_eps = self._population_size * self._eps_per_candidate mean_param_std = torch.mean(new_std) train_info = { "mean_return": train_return, "mean_ep_len": train_ep_len, "episodes": num_eps, "param_std": mean_param_std } return train_info def _sample_candidates(self, n): ''' TODO 1.1: Sample n set of candidate parameters from the current search distribution. The search distribution is a guassian distribution with mean self._param_mean and standard deviation self._param_std. Output a tensor containing parameters for each candidate. The tensor should have dimensions [n, param_size]. ''' param_size = self._param_mean.shape[0] # placeholder candidates = torch.zeros([n, param_size], device=self._device) return candidates def _eval_candidates(self, candidates): ''' TODO 1.2: Evaluate the performance of a set of candidate parameters. You can use torch.nn.utils.vector_to_parameters to copy a candidate's parameters to the model for the policy (self._model). self._rollout_test can then be used to evaluate the performance of that set of parameters. Record the average return and average episode length of each candidate in the output variables rets and ep_lens. ''' n = candidates.shape[0] # placeholder rets = np.zeros(n) ep_lens = np.zeros(n) return rets, ep_lens def _compute_new_params(self, params, rets): ''' TODO 1.3: Update the search distribution given a set of candidate parameters (params) and their corresponding performance (rets). Return the mean (new_mean) and standard deviation (new_std) of the new search distribution. ''' param_size = self._param_mean.shape[0] # placeholder new_mean = torch.zeros(param_size, device=self._device) new_std = torch.ones(param_size, device=self._device) return new_mean, new_std

a2/cem_agent.py

xbpeng-rl_assignments-cdb92a8

python

CEMModel(model_config, self._env)

import numpy as np import torch import learning.agent_builder as agent_builder import learning.base_agent as base_agent import learning.bc_model as bc_model import util.torch_util as torch_util class BCAgent(base_agent.BaseAgent): NAME = "BC" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) buffer_size = config["exp_buffer_size"] self._exp_buffer_length = max(buffer_size, self._steps_per_iter) self._batch_size = config["batch_size"] self._update_epochs = config["update_epochs"] return def _build_model(self, config): model_config = config["model"] self._model = bc_model.BCModel(model_config, self._env) self._build_expert(config) self._sync_normalizers() return def _build_expert(self, config): expert_config = config["expert_config"] expert = agent_builder.build_agent(expert_config, self._env, self._device) expert_model_file = config["expert_model_file"] assert(expert_model_file is not None) expert.load(expert_model_file) expert.set_mode(base_agent.AgentMode.TEST) # putting the expert in a list makes the expert's parameters invisible to the pytorch module self._experts = [expert] return def _sync_normalizers(self): expert = self._experts[0] self._obs_norm.load_state_dict(expert._obs_norm.state_dict()) self._a_norm.load_state_dict(expert._a_norm.state_dict()) return def _get_exp_buffer_length(self): return self._exp_buffer_length def _need_normalizer_update(self): return False def _build_exp_buffer(self, config): super()._build_exp_buffer(config) expert_a_buffer = torch.zeros_like(self._exp_buffer.get_data("action")) self._exp_buffer.add_buffer("expert_a", expert_a_buffer) return def _record_data_pre_step(self, obs, info, action, action_info): super()._record_data_pre_step(obs, info, action, action_info) self._exp_buffer.record("expert_a", action_info["expert_a"]) return def _update_model(self): self.train() num_samples = self._exp_buffer.get_sample_count() batch_size = self._batch_size num_batches = int(np.ceil(float(num_samples) / batch_size)) train_info = dict() for i in range(self._update_epochs): for b in range(num_batches): batch = self._exp_buffer.sample(batch_size) loss_info = self._compute_loss(batch) self._optimizer.zero_grad() loss = loss_info["loss"] loss.backward() self._optimizer.step() torch_util.add_torch_dict(loss_info, train_info) num_steps = self._update_epochs * num_batches torch_util.

scale_torch_dict(1.0 / num_steps, train_info)

return train_info def _compute_loss(self, batch): norm_obs = self._obs_norm.normalize(batch["obs"]) norm_expert_a = self._a_norm.normalize(batch["expert_a"]) actor_loss = self._compute_actor_loss(norm_obs, norm_expert_a) info = { "loss": actor_loss } return info def _eval_expert(self, obs): info = None expert = self._experts[0] expert_a, _ = expert._decide_action(obs, info) return expert_a def _decide_action(self, obs, info): ''' TODO 1.1: Implement code for sampling from the policy and querying the expert policy for the expert actions. ''' ## a) sample an action from the policy # placeholder a_space = self._env.get_action_space() a = torch.zeros(a_space.shape, device=self._device) ## b) query the expert for an action # placeholder a_space = self._env.get_action_space() expert_a = torch.zeros(a_space.shape, device=self._device) a_info = { "expert_a": expert_a } return a, a_info def _compute_actor_loss(self, norm_obs, norm_expert_a): ''' TODO 1.2: Implement code to calculate the loss for training the policy. ''' # placeholder loss = torch.zeros(1) return loss

a1/bc_agent.py

xbpeng-rl_assignments-cdb92a8

python

scale_torch_dict(1.0 / num_steps, train_info)

import numpy as np import torch import envs.base_env as base_env import learning.base_agent as base_agent import learning.pg_model as pg_model import util.torch_util as torch_util class PGAgent(base_agent.BaseAgent): NAME = "PG" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) self._batch_size = config["batch_size"] self._critic_update_epoch = config["critic_update_epoch"] self._norm_adv_clip = config["norm_adv_clip"] self._action_bound_weight = config["action_bound_weight"] return def _build_model(self, config): model_config = config["model"] self._model = pg_model.PGModel(model_config, self._env) return def _get_exp_buffer_length(self): return self._steps_per_iter def _build_exp_buffer(self, config): super()._build_exp_buffer(config) buffer_length = self._get_exp_buffer_length() tar_val_buffer = torch.zeros([buffer_length], device=self._device, dtype=torch.float) self._exp_buffer.add_buffer("tar_val", tar_val_buffer) adv_buffer = torch.zeros([buffer_length], device=self._device, dtype=torch.float) self._exp_buffer.add_buffer("adv", adv_buffer) norm_obs_buffer = torch.zeros_like(self._exp_buffer.get_data("obs")) self._exp_buffer.add_buffer("norm_obs", norm_obs_buffer) norm_action_buffer = torch.zeros_like(self._exp_buffer.get_data("action")) self._exp_buffer.add_buffer("norm_action", norm_action_buffer) return def _init_iter(self): super()._init_iter() self._exp_buffer.reset() return def _build_optimizer(self, config): actor_lr = float(config["actor_learning_rate"]) critic_lr = float(config["critic_learning_rate"]) actor_params = list(self._model._actor_layers.parameters())+list(self._model._action_dist.parameters()) actor_params_grad = [p for p in actor_params if p.requires_grad] self._actor_optimizer = torch.optim.SGD(actor_params_grad, actor_lr, momentum=0.9) critic_params = list(self._model._critic_layers.parameters())+list(self._model._critic_out.parameters()) critic_params_grad = [p for p in critic_params if p.requires_grad] self._critic_optimizer = torch.optim.SGD(critic_params_grad, critic_lr, momentum=0.9) return def _decide_action(self, obs, info): norm_obs = self._obs_norm.normalize(obs) norm_action_dist = self._model.eval_actor(norm_obs) if (self._mode == base_agent.AgentMode.TRAIN): norm_a = norm_action_dist.sample() elif (self._mode == base_agent.AgentMode.TEST): norm_a = norm_action_dist.mode else: assert(False), "Unsupported agent mode: {}".format(self._mode) norm_a = norm_a.detach() a = self._a_norm.unnormalize(norm_a) info = dict() return a, info def _build_train_data(self): self.eval() obs = self._exp_buffer.get_data("obs") r = self._exp_buffer.get_data("reward") done = self._exp_buffer.get_data("done") action = self._exp_buffer.get_data("action") norm_action = self._a_norm.normalize(action) norm_obs = self._obs_norm.normalize(obs) ret = self._calc_return(r, done) adv = self._calc_adv(norm_obs, ret) adv_std, adv_mean = torch.std_mean(adv) norm_adv = (adv - adv_mean) / torch.clamp_min(adv_std, 1e-5) norm_adv = torch.clamp(norm_adv, -self._norm_adv_clip, self._norm_adv_clip) self._exp_buffer.set_data("tar_val", ret) self._exp_buffer.set_data("adv", norm_adv) self._exp_buffer.set_data("norm_obs", norm_obs) self._exp_buffer.set_data("norm_action", norm_action) info = { "adv_mean": adv_mean, "adv_std": adv_std } return info def _update_model(self): self.train() num_samples = self._exp_buffer.get_sample_count() batch_size = self._batch_size num_batches = int(np.ceil(float(num_samples) / batch_size)) train_info = dict() for e in range(self._critic_update_epoch): for b in range(num_batches): batch = self._exp_buffer.sample(batch_size) critic_info = self._update_critic(batch) torch_util.

add_torch_dict(critic_info, train_info)

torch_util.scale_torch_dict(1.0 / num_batches, train_info) actor_batch = { "norm_obs": self._exp_buffer.get_data("norm_obs"), "norm_action": self._exp_buffer.get_data("norm_action"), "adv": self._exp_buffer.get_data("adv") } actor_info = self._update_actor(actor_batch) for key, data in actor_info.items(): train_info[key] = data return train_info def _update_critic(self, batch): norm_obs = batch["norm_obs"] tar_val = batch["tar_val"] loss = self._calc_critic_loss(norm_obs, tar_val) self._critic_optimizer.zero_grad() loss.backward() self._critic_optimizer.step() info = { "critic_loss": loss } return info def _update_actor(self, batch): norm_obs = batch["norm_obs"] norm_a = batch["norm_action"] adv = batch["adv"] loss = self._calc_actor_loss(norm_obs, norm_a, adv) info = { "actor_loss": loss } if (self._action_bound_weight != 0): a_dist = self._model.eval_actor(norm_obs) action_bound_loss = self._compute_action_bound_loss(a_dist) if (action_bound_loss is not None): action_bound_loss = torch.mean(action_bound_loss) loss += self._action_bound_weight * action_bound_loss info["action_bound_loss"] = action_bound_loss.detach() self._actor_optimizer.zero_grad() loss.backward() self._actor_optimizer.step() return info def _calc_return(self, r, done): ''' TODO 2.1: Given a tensor of per-timestep rewards (r), and a tensor (done) indicating if a timestep is the last timestep of an episode, Output a tensor (return_t) containing the return (i.e. reward-to-go) at each timestep. ''' # placeholder return_t = torch.zeros_like(r) return return_t def _calc_adv(self, norm_obs, ret): ''' TODO 2.2: Given the normalized observations (norm_obs) and the return at every timestep (ret), output the advantage at each timestep (adv). ''' # placeholder adv = torch.zeros_like(ret) return adv def _calc_critic_loss(self, norm_obs, tar_val): ''' TODO 2.3: Given the normalized observations (norm_obs) and the returns at every timestep (tar_val), compute a loss for updating the value function (critic). ''' # placeholder loss = torch.zeros(1) return loss def _calc_actor_loss(self, norm_obs, norm_a, adv): ''' TODO 2.4: Given the normalized observations (norm_obs), normalized actions (norm_a), and the advantage at every timestep (adv), compute a loss for updating the policy (actor). ''' # placeholder loss = torch.zeros(1) return loss

a2/pg_agent.py

xbpeng-rl_assignments-cdb92a8

python

add_torch_dict(critic_info, train_info)

import numpy as np import torch import envs.base_env as base_env import learning.base_agent as base_agent import learning.pg_model as pg_model import util.torch_util as torch_util class PGAgent(base_agent.BaseAgent): NAME = "PG" def __init__(self, config, env, device): super().__init__(config, env, device) return def _load_params(self, config): super()._load_params(config) self._batch_size = config["batch_size"] self._critic_update_epoch = config["critic_update_epoch"] self._norm_adv_clip = config["norm_adv_clip"] self._action_bound_weight = config["action_bound_weight"] return def _build_model(self, config): model_config = config["model"] self._model = pg_model.PGModel(model_config, self._env) return def _get_exp_buffer_length(self): return self._steps_per_iter def _build_exp_buffer(self, config): super()._build_exp_buffer(config) buffer_length = self._get_exp_buffer_length() tar_val_buffer = torch.zeros([buffer_length], device=self._device, dtype=torch.float) self._exp_buffer.add_buffer("tar_val", tar_val_buffer) adv_buffer = torch.zeros([buffer_length], device=self._device, dtype=torch.float) self._exp_buffer.add_buffer("adv", adv_buffer) norm_obs_buffer = torch.zeros_like(self._exp_buffer.get_data("obs")) self._exp_buffer.add_buffer("norm_obs", norm_obs_buffer) norm_action_buffer = torch.zeros_like(self._exp_buffer.get_data("action")) self._exp_buffer.add_buffer("norm_action", norm_action_buffer) return def _init_iter(self): super()._init_iter() self._exp_buffer.reset() return def _build_optimizer(self, config): actor_lr = float(config["actor_learning_rate"]) critic_lr = float(config["critic_learning_rate"]) actor_params = list(self._model._actor_layers.parameters())+list(self._model._action_dist.parameters()) actor_params_grad = [p for p in actor_params if p.requires_grad] self._actor_optimizer = torch.optim.SGD(actor_params_grad, actor_lr, momentum=0.9) critic_params = list(self._model._critic_layers.parameters())+list(self._model._critic_out.parameters()) critic_params_grad = [p for p in critic_params if p.requires_grad] self._critic_optimizer = torch.optim.SGD(critic_params_grad, critic_lr, momentum=0.9) return def _decide_action(self, obs, info): norm_obs = self._obs_norm.normalize(obs) norm_action_dist = self._model.eval_actor(norm_obs) if (self._mode == base_agent.AgentMode.TRAIN): norm_a = norm_action_dist.sample() elif (self._mode == base_agent.AgentMode.TEST): norm_a = norm_action_dist.mode else: assert(False), "Unsupported agent mode: {}".format(self._mode) norm_a = norm_a.detach() a = self._a_norm.unnormalize(norm_a) info = dict() return a, info def _build_train_data(self): self.eval() obs = self._exp_buffer.get_data("obs") r = self._exp_buffer.get_data("reward") done = self._exp_buffer.get_data("done") action = self._exp_buffer.get_data("action") norm_action = self._a_norm.normalize(action) norm_obs = self._obs_norm.normalize(obs) ret = self._calc_return(r, done) adv = self._calc_adv(norm_obs, ret) adv_std, adv_mean = torch.std_mean(adv) norm_adv = (adv - adv_mean) / torch.clamp_min(adv_std, 1e-5) norm_adv = torch.clamp(norm_adv, -self._norm_adv_clip, self._norm_adv_clip) self._exp_buffer.set_data("tar_val", ret) self._exp_buffer.set_data("adv", norm_adv) self._exp_buffer.set_data("norm_obs", norm_obs) self._exp_buffer.set_data("norm_action", norm_action) info = { "adv_mean": adv_mean, "adv_std": adv_std } return info def _update_model(self): self.train() num_samples = self._exp_buffer.get_sample_count() batch_size = self._batch_size num_batches = int(np.ceil(float(num_samples) / batch_size)) train_info = dict() for e in range(self._critic_update_epoch): for b in range(num_batches): batch = self._exp_buffer.sample(batch_size) critic_info = self._update_critic(batch) torch_util.add_torch_dict(critic_info, train_info) torch_util.

scale_torch_dict(1.0 / num_batches, train_info)

actor_batch = { "norm_obs": self._exp_buffer.get_data("norm_obs"), "norm_action": self._exp_buffer.get_data("norm_action"), "adv": self._exp_buffer.get_data("adv") } actor_info = self._update_actor(actor_batch) for key, data in actor_info.items(): train_info[key] = data return train_info def _update_critic(self, batch): norm_obs = batch["norm_obs"] tar_val = batch["tar_val"] loss = self._calc_critic_loss(norm_obs, tar_val) self._critic_optimizer.zero_grad() loss.backward() self._critic_optimizer.step() info = { "critic_loss": loss } return info def _update_actor(self, batch): norm_obs = batch["norm_obs"] norm_a = batch["norm_action"] adv = batch["adv"] loss = self._calc_actor_loss(norm_obs, norm_a, adv) info = { "actor_loss": loss } if (self._action_bound_weight != 0): a_dist = self._model.eval_actor(norm_obs) action_bound_loss = self._compute_action_bound_loss(a_dist) if (action_bound_loss is not None): action_bound_loss = torch.mean(action_bound_loss) loss += self._action_bound_weight * action_bound_loss info["action_bound_loss"] = action_bound_loss.detach() self._actor_optimizer.zero_grad() loss.backward() self._actor_optimizer.step() return info def _calc_return(self, r, done): ''' TODO 2.1: Given a tensor of per-timestep rewards (r), and a tensor (done) indicating if a timestep is the last timestep of an episode, Output a tensor (return_t) containing the return (i.e. reward-to-go) at each timestep. ''' # placeholder return_t = torch.zeros_like(r) return return_t def _calc_adv(self, norm_obs, ret): ''' TODO 2.2: Given the normalized observations (norm_obs) and the return at every timestep (ret), output the advantage at each timestep (adv). ''' # placeholder adv = torch.zeros_like(ret) return adv def _calc_critic_loss(self, norm_obs, tar_val): ''' TODO 2.3: Given the normalized observations (norm_obs) and the returns at every timestep (tar_val), compute a loss for updating the value function (critic). ''' # placeholder loss = torch.zeros(1) return loss def _calc_actor_loss(self, norm_obs, norm_a, adv): ''' TODO 2.4: Given the normalized observations (norm_obs), normalized actions (norm_a), and the advantage at every timestep (adv), compute a loss for updating the policy (actor). ''' # placeholder loss = torch.zeros(1) return loss

a2/pg_agent.py

xbpeng-rl_assignments-cdb92a8

python

scale_torch_dict(1.0 / num_batches, train_info)

import os import pickle import random from os.path import exists import torch from transformers import AdamW, BertTokenizer, get_linear_schedule_with_warmup from dataset import Dataset from model import BertCausalModel from preprocess import make_data_pickle from utils import split_train_test, compute_f1, get_hparams import logging def train(processed_files, use_scheduler=True, batch_size_train=25, batch_size_test=20, epoch_nums=100, saved_models=None, learning_rate=2e-5, output_dir=None): logging.basicConfig(level=logging.INFO, filename=output_dir, filemode='w') data_pickle = f'{processed_files}/data.pickle' debug = False if not exists(data_pickle) or debug: raw_pickle = f'{processed_files}/document_raw.pickle' tokenizer = BertTokenizer.from_pretrained('bert-base-uncased') make_data_pickle(raw_pickle=raw_pickle, data_pickle=data_pickle, tokenizer=tokenizer, debug=True) with open(data_pickle, 'rb') as f: data = pickle.load(f) train_set, test_set = split_train_test(data) filter = [] for d in train_set: if d[-1] == 'NULL': if random.random() < 0.7: continue filter.append(d) train_set = filter train_dataset = Dataset(batch_size=batch_size_train, dataset=train_set) test_dataset = Dataset(batch_size=batch_size_test, dataset=test_set) device = torch.device("cuda") model = BertCausalModel(y_num=2).to(device) # binary if not exists(saved_models): os.makedirs(saved_models) param_optimizer = list(model.named_parameters()) no_decay = ['bias', 'LayerNorm.bias', 'LayerNorm.weight'] optimizer_grouped_parameters = [ {'params': [p for n, p in param_optimizer if not any(nd in n for nd in no_decay)], 'weight_decay': 0.01}, {'params': [p for n, p in param_optimizer if any( nd in n for nd in no_decay)], 'weight_decay': 0.0}] optimizer = AdamW(optimizer_grouped_parameters, lr=learning_rate) scheduler = None if use_scheduler: logging.info('with_scheduler') t_total = int(len(train_set) / 25 / 1 * 60) scheduler = get_linear_schedule_with_warmup(optimizer, num_warmup_steps=int(t_total * 0.1), num_training_steps=t_total) else: logging.info('wo_scheduler') loss_fn = torch.nn.CrossEntropyLoss(reduction='sum') max_f1 = 0 saved_model_path = None for epoch in range(epoch_nums): model.train() for batch in train_dataset.

get_tqdm(device, True):

sentences_s, mask_s, sentences_t, mask_t, event1, event1_mask, event2, event2_mask, data_y = batch opt = model(sentences_s, mask_s, sentences_t, mask_t, event1, event1_mask, event2, event2_mask) loss = loss_fn(opt, data_y) optimizer.zero_grad() loss.backward() optimizer.step() if use_scheduler: scheduler.step() model.eval() with torch.no_grad(): predicted_all = [] gold_all = [] for batch in test_dataset.reader(device, False): sentences_s, mask_s, sentences_t, mask_t, event1, event1_mask, event2, event2_mask, data_y = batch opt = model(sentences_s, mask_s, sentences_t, mask_t, event1, event1_mask, event2, event2_mask) predicted = torch.argmax(opt, -1) predicted = list(predicted.cpu().numpy()) predicted_all += predicted gold = list(data_y.cpu().numpy()) gold_all += gold p, r, f = compute_f1(gold_all, predicted_all) if f > max_f1: max_f1 = f if saved_model_path: os.remove(saved_model_path) saved_model_path = f'{saved_models}/best_model_{epoch}.pt' torch.save(model, saved_model_path) logging.info(f'epoch={epoch}: p={p}, r={r}, f1={f}') if __name__ == '__main__': hparams = get_hparams() train(processed_files=hparams.processed_files, use_scheduler=hparams.use_scheduler, batch_size_train=hparams.batch_size_train, batch_size_test=hparams.batch_size_test, epoch_nums=hparams.epoch_nums, saved_models=hparams.saved_models, learning_rate=hparams.learning_rate, output_dir=hparams.output_dir)

src/Event_causality/train.py

heng840-All_pipeline_Information_Extraction-e94dd96

python

get_tqdm(device, True):

from datetime import datetime, timezone, timedelta from zoneinfo import ZoneInfo import pytest from faker import Faker from pydantic_dynamo.exceptions import RequestObjectStateError from pydantic_dynamo.models import FilterCommand, UpdateCommand, PartitionedContent from pydantic_dynamo.v2.models import GetResponse from tests.factories import ExamplePartitionedContentFactory, ExampleFactory from tests.models import CountEnum, Example, FieldModel fake = Faker() async def test_get_none(v2_example_repo): actual = await v2_example_repo.get(None, None) expected = GetResponse() assert actual == expected def test_sync_get_none(sync_v2_example_repo): actual = sync_v2_example_repo.get(None, None) expected = GetResponse() assert actual == expected async def test_put_then_get_item(v2_example_repo): partition_ids = [fake.bothify()] content_ids = [fake.bothify()] content = ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) await v2_example_repo.put(content) actual = await v2_example_repo.get(partition_ids, content_ids) expected = GetResponse(content=content) assert actual == expected def test_sync_put_then_get_item(sync_v2_example_repo): partition_ids = [fake.bothify()] content_ids = [fake.bothify()] content = ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) sync_v2_example_repo.put(content) actual = sync_v2_example_repo.get(partition_ids, content_ids) expected = GetResponse(content=content) assert actual == expected async def test_put_batch_then_get_batch(v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(125)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) get_ids = [(partition_ids, content_ids) for content_ids in content_ids_list] actual = [ content async for response in v2_example_repo.get_batch(get_ids) for content in response.contents ] actual.sort() contents.sort() assert actual == contents def test_sync_put_batch_then_get_batch(sync_v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(125)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) get_ids = [(partition_ids, content_ids) for content_ids in content_ids_list] actual = [ content for response in sync_v2_example_repo.get_batch(get_ids) for content in response.contents ] actual.sort() contents.sort() assert actual == contents async def test_put_batch_then_list_with_prefix_filter_and_sorting(v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(137)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) ascending_actual = [ content async for response in v2_example_repo.list( partition_ids, content_prefix=["0"], sort_ascending=True ) for content in response.contents ] expected = contents[:100] expected.sort() assert ascending_actual == expected descending_actual = [ content async for response in v2_example_repo.list( partition_ids, content_prefix=["0"], sort_ascending=False ) for content in response.contents ] expected.sort(reverse=True) assert descending_actual == expected def test_sync_put_batch_then_list_with_prefix_filter_and_sorting(sync_v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(137)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) ascending_actual = [ content for response in sync_v2_example_repo.list( partition_ids, content_prefix=["0"], sort_ascending=True ) for content in response.contents ] expected = contents[:100] expected.sort() assert ascending_actual == expected descending_actual = [ content for response in sync_v2_example_repo.list( partition_ids, content_prefix=["0"], sort_ascending=False ) for content in response.contents ] expected.sort(reverse=True) assert descending_actual == expected async def test_put_batch_then_list_limit(v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) actual = [ content async for response in v2_example_repo.list(partition_ids, content_prefix=None, limit=2) for content in response.contents ] expected = contents[:2] assert actual == expected def test_sync_put_batch_then_list_limit(sync_v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) actual = [ content for response in sync_v2_example_repo.list(partition_ids, content_prefix=None, limit=2) for content in response.contents ] expected = contents[:2] assert actual == expected async def test_put_batch_then_list_filter(v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) actual = [ content async for response in v2_example_repo.list( partition_ids, content_prefix=None, filters=FilterCommand(equals={"enum_field": "one"}), ) for content in response.contents ] actual.sort() expected = list(filter(lambda c: c.item.enum_field == CountEnum.

One, contents))

expected.sort() assert actual == expected def test_sync_put_batch_then_list_filter(sync_v2_example_repo): partition_ids = [fake.bothify()] content_ids_list = [[str(i).rjust(3, "0")] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) actual = [ content for response in sync_v2_example_repo.list( partition_ids, content_prefix=None, filters=FilterCommand(equals={"enum_field": "one"}), ) for content in response.contents ] actual.sort() expected = list(filter(lambda c: c.item.enum_field == CountEnum.One, contents)) expected.sort() assert actual == expected async def test_put_batch_then_list_between_sorting(v2_example_repo): partition_ids = [fake.bothify()] now = datetime.now(tz=timezone.utc) content_ids_list = [[(now + timedelta(seconds=i)).isoformat()] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) ascending_actual = [ content async for response in v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], sort_ascending=True, ) for content in response.contents ] expected = contents[1:9] assert ascending_actual == expected descending_actual = [ content async for response in v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], sort_ascending=False, ) for content in response.contents ] expected.sort(key=lambda c: c.content_ids[0], reverse=True) assert descending_actual == expected def test_sync_put_batch_then_list_between_sorting(sync_v2_example_repo): partition_ids = [fake.bothify()] now = datetime.now(tz=timezone.utc) content_ids_list = [[(now + timedelta(seconds=i)).isoformat()] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) ascending_actual = [ content for response in sync_v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], sort_ascending=True, ) for content in response.contents ] expected = contents[1:9] assert ascending_actual == expected descending_actual = [ content for response in sync_v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], sort_ascending=False, ) for content in response.contents ] expected.sort(key=lambda c: c.content_ids[0], reverse=True) assert descending_actual == expected async def test_put_batch_then_list_between_limit(v2_example_repo): partition_ids = [fake.bothify()] now = datetime.now(tz=timezone.utc) content_ids_list = [[(now + timedelta(seconds=i)).isoformat()] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) ascending_actual = [ content async for response in v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], limit=5, sort_ascending=True, ) for content in response.contents ] expected = contents[1:6] assert ascending_actual == expected descending_actual = [ content async for response in v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], limit=5, sort_ascending=False, ) for content in response.contents ] descending_expected = sorted(contents, key=lambda c: c.content_ids[0], reverse=True)[1:6] assert descending_actual == descending_expected def test_sync_put_batch_then_list_between_limit(sync_v2_example_repo): partition_ids = [fake.bothify()] now = datetime.now(tz=timezone.utc) content_ids_list = [[(now + timedelta(seconds=i)).isoformat()] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) ascending_actual = [ content for response in sync_v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], limit=5, sort_ascending=True, ) for content in response.contents ] expected = contents[1:6] assert ascending_actual == expected descending_actual = [ content for response in sync_v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], limit=5, sort_ascending=False, ) for content in response.contents ] descending_expected = sorted(contents, key=lambda c: c.content_ids[0], reverse=True)[1:6] assert descending_actual == descending_expected async def test_put_batch_then_list_between_filter(v2_example_repo): partition_ids = [fake.bothify()] now = datetime.now(tz=timezone.utc) content_ids_list = [[(now + timedelta(seconds=i)).isoformat()] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) ascending_actual = [ content async for response in v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], filters=FilterCommand(equals={"enum_field": "one"}), ) for content in response.contents ] expected = list(filter(lambda c: c.item.enum_field == CountEnum.One, contents[1:9])) assert ascending_actual == expected def test_sync_put_batch_then_list_between_filter(sync_v2_example_repo): partition_ids = [fake.bothify()] now = datetime.now(tz=timezone.utc) content_ids_list = [[(now + timedelta(seconds=i)).isoformat()] for i in range(10)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) ascending_actual = [ content for response in sync_v2_example_repo.list_between( partition_id=partition_ids, content_start=[(now + timedelta(seconds=1)).isoformat()], content_end=[(now + timedelta(seconds=8)).isoformat()], filters=FilterCommand(equals={"enum_field": "one"}), ) for content in response.contents ] expected = list(filter(lambda c: c.item.enum_field == CountEnum.One, contents[1:9])) assert ascending_actual == expected async def test_update_happy_path(v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] content = ExamplePartitionedContentFactory(partition_ids=partition_id, content_ids=content_id) await v2_example_repo.put(content) new_dt = datetime.now(tz=ZoneInfo("America/New_York")) new_str = fake.bs() # TTL stored as integer where we lose microsecond granularity new_expiry = (new_dt + timedelta(days=99)).replace(microsecond=0) await v2_example_repo.update( partition_id, content_id, UpdateCommand( current_version=1, set_commands={"datetime_field": new_dt}, increment_attrs={"int_field": 2}, append_attrs={"list_field": [new_str]}, expiry=new_expiry, ), ) updated = await v2_example_repo.get(partition_id, content_id) og_dict = content.item.dict() og_dict.pop("datetime_field") expected = PartitionedContent[Example]( partition_ids=partition_id, content_ids=content_id, item=Example( datetime_field=new_dt, int_field=og_dict.pop("int_field") + 2, list_field=og_dict.pop("list_field") + [new_str], **og_dict ), current_version=2, expiry=new_expiry, ) assert updated.content == expected def test_sync_update_happy_path(sync_v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] content = ExamplePartitionedContentFactory(partition_ids=partition_id, content_ids=content_id) sync_v2_example_repo.put(content) new_dt = datetime.now(tz=ZoneInfo("America/New_York")) new_str = fake.bs() # TTL stored as integer where we lose microsecond granularity new_expiry = (new_dt + timedelta(days=99)).replace(microsecond=0) sync_v2_example_repo.update( partition_id, content_id, UpdateCommand( current_version=1, set_commands={"datetime_field": new_dt}, increment_attrs={"int_field": 2}, append_attrs={"list_field": [new_str]}, expiry=new_expiry, ), ) updated = sync_v2_example_repo.get(partition_id, content_id) og_dict = content.item.dict() og_dict.pop("datetime_field") expected = PartitionedContent[Example]( partition_ids=partition_id, content_ids=content_id, item=Example( datetime_field=new_dt, int_field=og_dict.pop("int_field") + 2, list_field=og_dict.pop("list_field") + [new_str], **og_dict ), current_version=2, expiry=new_expiry, ) assert updated.content == expected async def test_update_nested_model_field(v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] init_value = fake.bs() content = ExamplePartitionedContentFactory( partition_ids=partition_id, content_ids=content_id, item=ExampleFactory(model_field=FieldModel(test_field=init_value, failures=1)), ) await v2_example_repo.put(content) await v2_example_repo.update( partition_id, content_id, UpdateCommand(set_commands={"model_field": {"failures": 2}}), ) updated = await v2_example_repo.get(partition_id, content_id) expected = GetResponse( content=PartitionedContent[Example]( partition_ids=partition_id, content_ids=content_id, item=Example( model_field=FieldModel(test_field=init_value, failures=2), **content.item.dict(exclude={"model_field"}) ), current_version=2, ) ) assert updated == expected def test_sync_update_nested_model_field(sync_v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] init_value = fake.bs() content = ExamplePartitionedContentFactory( partition_ids=partition_id, content_ids=content_id, item=ExampleFactory(model_field=FieldModel(test_field=init_value, failures=1)), ) sync_v2_example_repo.put(content) sync_v2_example_repo.update( partition_id, content_id, UpdateCommand(set_commands={"model_field": {"failures": 2}}), ) updated = sync_v2_example_repo.get(partition_id, content_id) expected = GetResponse( content=PartitionedContent[Example]( partition_ids=partition_id, content_ids=content_id, item=Example( model_field=FieldModel(test_field=init_value, failures=2), **content.item.dict(exclude={"model_field"}) ), current_version=2, ) ) assert updated == expected async def test_update_nested_dict_field(v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] init_value = fake.bs() content = ExamplePartitionedContentFactory( partition_ids=partition_id, content_ids=content_id, item=ExampleFactory(dict_field={"one": init_value, "two": init_value}), ) await v2_example_repo.put(content) new_value = fake.bs() await v2_example_repo.update( partition_id, content_id, UpdateCommand(set_commands={"dict_field": {"two": new_value}}), ) updated = await v2_example_repo.get(partition_id, content_id) expected = GetResponse( content=PartitionedContent[Example]( partition_ids=partition_id, content_ids=content_id, item=Example( dict_field={"one": init_value, "two": new_value}, **content.item.dict(exclude={"dict_field"}) ), current_version=2, ) ) assert updated == expected def test_sync_update_nested_dict_field(sync_v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] init_value = fake.bs() content = ExamplePartitionedContentFactory( partition_ids=partition_id, content_ids=content_id, item=ExampleFactory(dict_field={"one": init_value, "two": init_value}), ) sync_v2_example_repo.put(content) new_value = fake.bs() sync_v2_example_repo.update( partition_id, content_id, UpdateCommand(set_commands={"dict_field": {"two": new_value}}), ) updated = sync_v2_example_repo.get(partition_id, content_id) expected = GetResponse( content=PartitionedContent[Example]( partition_ids=partition_id, content_ids=content_id, item=Example( dict_field={"one": init_value, "two": new_value}, **content.item.dict(exclude={"dict_field"}) ), current_version=2, ) ) assert updated == expected async def test_update_requires_exists_but_doesnt(v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] with pytest.raises(RequestObjectStateError) as ex: await v2_example_repo.update( partition_id=partition_id, content_id=content_id, command=UpdateCommand() ) assert partition_id[0] in str(ex) assert content_id[0] in str(ex) def test_sync_update_requires_exists_but_doesnt(sync_v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] with pytest.raises(RequestObjectStateError) as ex: sync_v2_example_repo.update( partition_id=partition_id, content_id=content_id, command=UpdateCommand() ) assert partition_id[0] in str(ex) assert content_id[0] in str(ex) async def test_update_mismatched_version(v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] content = ExamplePartitionedContentFactory(partition_ids=partition_id, content_ids=content_id) await v2_example_repo.put(content) new_expiry = datetime.now(tz=ZoneInfo("America/New_York")) # First update should succeed and increment version to 2 await v2_example_repo.update( partition_id, content_id, UpdateCommand( current_version=1, expiry=new_expiry, ), ) # Second update should fail because db has current_version of 2 with pytest.raises(RequestObjectStateError) as ex: await v2_example_repo.update( partition_id, content_id, UpdateCommand( current_version=1, expiry=new_expiry, ), ) assert partition_id[0] in str(ex) assert content_id[0] in str(ex) def test_sync_update_mismatched_version(sync_v2_example_repo): partition_id = [fake.bothify()] content_id = [fake.bothify()] content = ExamplePartitionedContentFactory(partition_ids=partition_id, content_ids=content_id) sync_v2_example_repo.put(content) new_expiry = datetime.now(tz=ZoneInfo("America/New_York")) # First update should succeed and increment version to 2 sync_v2_example_repo.update( partition_id, content_id, UpdateCommand( current_version=1, expiry=new_expiry, ), ) # Second update should fail because db has current_version of 2 with pytest.raises(RequestObjectStateError) as ex: sync_v2_example_repo.update( partition_id, content_id, UpdateCommand( current_version=1, expiry=new_expiry, ), ) assert partition_id[0] in str(ex) assert content_id[0] in str(ex) async def test_put_batch_then_delete(v2_example_repo): partition_ids = [fake.bothify()] # 25 seems to be the boto3 default size for batch writes, 100 is the limit for batch gets # 137 ensures we span both of those limits and do so with partial size batches content_ids_list = [[str(i).rjust(3, "0")] for i in range(137)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] await v2_example_repo.put_batch(contents) await v2_example_repo.delete(partition_ids, ["0"]) remaining = [ content async for response in v2_example_repo.list( partition_ids, None, ) for content in response.contents ] assert remaining == contents[100:] def test_sync_put_batch_then_delete(sync_v2_example_repo): partition_ids = [fake.bothify()] # 25 seems to be the boto3 default size for batch writes, 100 is the limit for batch gets # 137 ensures we span both of those limits and do so with partial size batches content_ids_list = [[str(i).rjust(3, "0")] for i in range(137)] contents = [ ExamplePartitionedContentFactory(partition_ids=partition_ids, content_ids=content_ids) for content_ids in content_ids_list ] sync_v2_example_repo.put_batch(contents) sync_v2_example_repo.delete(partition_ids, ["0"]) remaining = [ content for response in sync_v2_example_repo.list( partition_ids, None, ) for content in response.contents ] assert remaining == contents[100:]

tests/test_integration/test_v2/test_repository.py

david-a-jetter-pydantic-dynamo-ff0aa6d

python

One, contents))

import os import tqdm import pandas as pd import torch from pyannote.core import Annotation, Segment from .utils import load_audio from .vad import SpeechDetector from .sqa import SpeechQualityAssigner from .classify import SoundClassifier import pdb class CleanSpeechDetector: def __init__(self, args): self.sr: int = args['sr'] self.csd_csv_dir: str = args['csd_csv_dir'] os.makedirs(self.csd_csv_dir, exist_ok=True) self.se_out_postfix: str = args['se_out_postfix'] self.vad_manager = SpeechDetector(args) self.sqa_manager = SpeechQualityAssigner(args) self.sc_manager = SoundClassifier(args) def set_vad_wav_name(self, audio_file_path, use_se=False): vad_audio_path = audio_file_path if use_se: audio_file_name = os.path.splitext(audio_file_path)[0] se_audio_file_path = audio_file_name + self.se_out_postfix + '.wav' if os.path.exists(se_audio_file_path): vad_audio_path = se_audio_file_path else: print("No Exists Speech Enhanced wav: {}".format(se_audio_file_path)) return vad_audio_path def run_segments(self, input_audio_path, out_vad, topk=5, sc_chunk_time=1.0, sc_step_ratio=0.1, use_round=True): waveform = load_audio(input_audio_path, sr=self.sr) waveform = torch.FloatTensor(waveform) columns = ["index", "start", "end"] for k in range(topk): for name in ['code', 'name', 'pred']: columns.append("top{}_{}".format(k+1, name)) columns.append("NORESQA_MOS") results = {} for col in columns: results[col] = [] for idx, seg in tqdm.tqdm(enumerate(out_vad.get_timeline())): start_t, end_t = seg.start, seg.end start, end = int(start_t*self.sr), int(end_t*self.sr) seg_waveform = waveform[start:end] sc_results = self.sc_manager.

pred_topk_with_label(seg_waveform, chunk_time=sc_chunk_time, step_ratio=sc_step_ratio, topk=topk)

mos_score = self.sqa_manager.estimate_score(seg_waveform) results["index"].append(idx) results["start"].append(start_t) results["end"].append(end_t) for k, (code, name, prob) in enumerate(sc_results): for key, value in zip(['code', 'name', 'pred'], [code, name, prob]): results["top{}_{}".format(k+1, key)].append(value) results["NORESQA_MOS"].append(mos_score) df = pd.DataFrame.from_dict(results) # optional if use_round: df = df.round(3) return df def __call__(self, audio_file_path, results=None, use_se=False, save_csv=True, overwrite=False, topk=5, sc_chunk_time=1.0, sc_step_ratio=0.1): if results is None: vad_audio_path = self.set_vad_wav_name(audio_file_path, use_se=use_se) binarized_segments = self.vad_manager(vad_audio_path) else: binarized_segments = Annotation() segments = results["segments"] for seg_dict in segments: start = seg_dict['start'] end = seg_dict['end'] spk_id = seg_dict['speaker'] binarized_segments[Segment(start, end)] = spk_id df = self.run_segments(audio_file_path, binarized_segments, topk=topk, sc_chunk_time=sc_chunk_time, sc_step_ratio=sc_step_ratio) if save_csv: save_csv_name = os.path.splitext(os.path.basename(audio_file_path))[0]+'.csv' save_csv_path = os.path.join(self.csd_csv_dir, save_csv_name) df.to_csv(save_csv_path) return df if __name__ == '__main__': """ Get an argument parser. """ import argparse from utils import set_seeds from whisper.audio import SAMPLE_RATE parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) # basic config parser.add_argument("--device", type=str, default="cuda" if torch.cuda.is_available() else "cpu", help="device to use for PyTorch inference") parser.add_argument("--seed", type=int, default=777, help="seed number") # parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight.wav', required=False, help='path of test wav file') parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.wav', required=False, help='path of test wav file') parser.add_argument('--sr', type=int, default=SAMPLE_RATE, required = False, help='sampling rate') parser.add_argument("--exp_dir", type=str, default='exps', help="path to experiments directory") parser.add_argument("--csd_csv_dir", type=str, default='csd/csv', help="path to experiments directory") # Speech Enhancement config parser.add_argument('--se_out_postfix', type=str, default='_SE_FRCRN.wav', required=False, help='output postfix string') # vad config parser.add_argument("--vad_tmp_dir", default="vad/tmp_wav", help="Temporary directory to write audio file if input if not .wav format (only for VAD).") parser.add_argument("--vad_save_lab_dir", default="vad/lab", help="Temporary directory to write audio file if input if not .wav format (only for VAD).") parser.add_argument("--hf_token", type=str, default='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', help="Hugging Face Access Token to access PyAnnote gated models") parser.add_argument("--vad_onset", type=float, default=0.500, help="Onset threshold for VAD (see pyannote.audio), reduce this if speech is not being detected") parser.add_argument("--vad_offset", type=float, default=0.363, help="Offset threshold for VAD (see pyannote.audio), reduce this if speech is not being detected.") parser.add_argument("--vad_pad_onset", type=float, default=0.250, help="Padding Onset for VAD (see pyannote.audio)") parser.add_argument("--vad_pad_offset", type=float, default=0.250, help="Padding time for VAD (see pyannote.audio)") # speech quality assessment config parser.add_argument("--sqa_ssl_model_path", type=str, default='models/sqa_models/wav2vec_small.pt', help="pretrained wav2vec base model path") parser.add_argument("--sqa_model_ckpt_path", type=str, default='models/sqa_models/model_noresqa_mos.pth', help="pretrained NORESQA-MOS model path") parser.add_argument('--sqa_nmr_wav_dir', type=str, default='/mnt/dataset/daps', required = False, help='path of clean wav file') parser.add_argument('--sqa_nmr_feat_path', type=str, default='sqa/noresqa/feat/daps_nmr_embs.pkl', required = False, help='path of nmr embedding pickle file') parser.add_argument("--sqa_nmr_chunk_time", type=float, default=3.0, help="nmr wav chunk time") parser.add_argument("--sqa_nmr_step_size", type=int, default=75, help="embedding step size") # sound classification config parser.add_argument('--sc_ontology_file_path', type=str, default='data/BEATs/ontology.json', required=False, help='path of audioset ontology') parser.add_argument('--sc_labels_indices_csv', type=str, default='data/BEATs/class_labels_indices.csv', required=False, help='csv file of containing audioset label indices') parser.add_argument("--beats_model_ckpt_path", type=str, default='models/sc_models/BEATs_iter3_plus_AS2M_finetuned_on_AS2M_cpt2.pt', help="pretrained BEATs model path") args = parser.parse_args().__dict__ args['vad_tmp_dir'] = os.path.join(args['exp_dir'], args['vad_tmp_dir']) args['vad_save_lab_dir'] = os.path.join(args['exp_dir'], args['vad_save_lab_dir']) args['sqa_nmr_feat_path'] = os.path.join(args['exp_dir'], args['sqa_nmr_feat_path']) args['csd_csv_dir'] = os.path.join(args['exp_dir'], args['csd_csv_dir']) set_seeds(args['seed']) test_wav_path: str = args.pop('test_wav_path') assert(os.path.exists(test_wav_path)), "No Exists File Name: {}".format(test_wav_path) detector = CleanSpeechDetector(args) df = detector(test_wav_path)

src/collector.py

fbdp1202-tts_data_engine-02353ab

python

pred_topk_with_label(seg_waveform, chunk_time=sc_chunk_time, step_ratio=sc_step_ratio, topk=topk)

#Copyright (c) Meta Platforms, Inc. and affiliates. #All rights reserved. #This source code is licensed under the license found in the #LICENSE file in the root directory of this source tree. import os import sys import math import glob import tqdm import pickle import tarfile import hashlib import subprocess import numpy as np from scipy import signal import librosa import torch import torch.nn as nn import torch.nn.functional as F from .noresqa.model import NORESQA from .utils import load_audio DAPS_DATASET_URL = 'https://zenodo.org/record/4660670/files/daps.tar.gz?download=1' DAPS_N_CLEAN_WAV_NUM = 100 import pdb def md5(fname): hash_md5 = hashlib.md5() with open(fname, "rb") as f: for chunk in iter(lambda: f.read(4096), b""): hash_md5.update(chunk) return hash_md5.hexdigest() def check_daps_dataset(tar_file_path): md5ck = md5(tar_file_path) md5gt = '303c130b7ce2e02b59c7ca5cd595a89c' if md5ck == md5gt: print('Checksum successful {}.'.format(tar_file_path)) else: raise Warning('Checksum failed {}.'.format(tar_file_path)) def download_daps_dataset(out_dir): out_file_path = os.path.join(out_dir, 'daps.tar.gz') out = subprocess.call('wget {} -O {}'.format(DAPS_DATASET_URL, out_file_path), shell=True) if out != 0: raise ValueError('Download failed {}.'.format(DAPS_DATASET_URL)) check_daps_dataset(out_file_path) def extract_targz_file(out_dir, tar_file_path): with tarfile.open(tar_file_path, "r:gz") as tar: subdir_and_files = [ tarinfo for tarinfo in tar.getmembers() if tarinfo.name.startswith("daps/clean/") ] tar.extractall(out_dir, members=subdir_and_files) def prepare_daps_dataset(nmr_wav_dir): os.makedirs(nmr_wav_dir, exist_ok=True) if not os.path.exists(os.path.join(nmr_wav_dir, '.done')): tar_file_path = os.path.join(nmr_wav_dir, 'daps.tar.gz') if not os.path.exists(tar_file_path): download_daps_dataset(nmr_wav_dir) extract_targz_file(nmr_wav_dir, tar_file_path) f = open(os.path.join(nmr_wav_dir, '.done'), 'wb') f.close() class SpeechQualityAssigner: def __init__(self, args): output_dim: int = 40 ssl_model_path: str = args['sqa_ssl_model_path'] device: str = args['device'] self.device = torch.device(device) self.sr: int = args['sr'] self.model_ckpt_path: str = args['sqa_model_ckpt_path'] self.nmr_chunk_time: float = args['sqa_nmr_chunk_time'] self.nmr_step_size: int = args['sqa_nmr_step_size'] nmr_wav_dir: str = args['sqa_nmr_wav_dir'] nmr_feat_path: str = args['sqa_nmr_feat_path'] os.makedirs(os.path.dirname(nmr_feat_path), exist_ok=True) # prepare daps dataset prepare_daps_dataset(nmr_wav_dir) self.sqa_model = NORESQA(output=output_dim, output2=output_dim, config_path=ssl_model_path) self.load_parameter(self.model_ckpt_path) self.sqa_model.to(self.device) self.sqa_model.eval() nmr_embs = self.load_nmr_emb(nmr_feat_path, nmr_wav_dir) self.nmr_embs = nmr_embs.to(self.device) def load_parameter(self, model_ckpt_path): model_dict = self.sqa_model.state_dict() params = torch.load(model_ckpt_path, map_location="cpu")['state_dict'] pretrained_dict = {} for name, param in params.items(): name = name.replace('module.', '') if 'module' in name else name pretrained_dict[name] = param model_dict.update(pretrained_dict) self.sqa_model.

load_state_dict(pretrained_dict)

def pred_noresqa_mos(self, test_feat, nmr_feat=None): with torch.no_grad(): score = self.sqa_model(nmr_feat, test_feat).detach().cpu().numpy()[0] return score def extract_nmr_embbeddings(self, nmr_wav_dir): nmr_wav_npy = os.path.join(nmr_wav_dir, 'clean_nmr_n100_{}ms.npy'.format(int(self.nmr_chunk_time*1000))) if not os.path.exists(nmr_wav_npy): print(">>Prepare nmr waveforms") nmr_wav_list = sorted(glob.glob(nmr_wav_dir+"/daps/clean/*.wav")) nmr_wav_list = [wav_path for wav_path in nmr_wav_list if not wav_path.startswith('.')] assert(len(nmr_wav_list) == DAPS_N_CLEAN_WAV_NUM) nmr_wav_arr = [] for nmr_wav_path in wav_nmr_list: nmr_waveform = load_audio(nmr_wav_path, sr=self.sr, chunk_time=self.nmr_chunk_time) # nmr_waveform shape: (wav_sr*max_nmr_wav_time,) nmr_wav_arr.append(nmr_waveform) nmr_wav_arr = np.stack(nmr_wav_arr) np.save(nmr_wav_npy, nmr_wav_arr) else: print(">>Load prepared clean nmr waveforms") nmr_wav_arr = np.load(nmr_wav_npy) nmr_feat = torch.FloatTensor(nmr_wav_arr).to(self.device) nmr_embs = [] for nmr_id in tqdm.tqdm(range(nmr_feat.shape[0])): nmr_feat = nmr_feat[nmr_id:nmr_id+1] with torch.no_grad(): nmr_emb = self.sqa_model.extract_embeddings(nmr_feat) nmr_embs.append(nmr_emb.detach().cpu()) nmr_embs = torch.vstack(nmr_embs) return nmr_embs def load_nmr_emb(self, nmr_feat_path, nmr_wav_dir, overwrite=False): if overwrite or not os.path.exists(nmr_feat_path): nmr_embs = self.extract_nmr_embbeddings(nmr_wav_dir) with open(nmr_feat_path, 'wb') as wf: pickle.dump(nmr_embs, wf, protocol=pickle.HIGHEST_PROTOCOL) else: with open(nmr_feat_path, 'rb') as rf: nmr_embs = pickle.load(rf) return nmr_embs def estimate_score(self, waveform, max_time=60): """ Parameters ---------- waveform: torch.FloatTensor (n_samples,) Input Raw Waveform. Returns ---------- mos_score : float Detection score. """ waveform = waveform.to(self.device).unsqueeze(0) with torch.no_grad(): nmr_embs = self.nmr_embs # we just use max_time if record has more than max_time max_frames = max_time*self.sr if max_frames < waveform.shape[1]: waveform = waveform[:, :max_frames] test_embs = self.sqa_model.extract_embeddings(waveform) test_embs = test_embs.repeat(nmr_embs.shape[0], 1, 1) n_test_frames = test_embs.shape[2] n_nmr_frames = self.nmr_embs.shape[2] nmr_step_size = self.nmr_step_size mos_scores = [] n_chunk = max(1, int(math.ceil(n_test_frames-n_nmr_frames+nmr_step_size)/nmr_step_size)) for n in range(n_chunk): start = nmr_step_size*n end = min(start + n_nmr_frames, n_test_frames) input_test_embs = test_embs[:,:,start:end] results = self.sqa_model.estimate_score_bw_embs(nmr_embs[:,:,:end-start], input_test_embs) mos_score = results['mos_score'].mean().detach().cpu().item() mos_scores.append(mos_score) final_mos_score = np.mean(mos_scores) return final_mos_score def __call__(self, input_audio_path, seg_arr=None, verbose=False): waveform = load_audio(input_audio_path, sr=self.sr) waveform = torch.FloatTensor(waveform) if seg_arr is not None: mos_score_list = [] for start, end in zip(seg_arr[:,0], seg_arr[:,1]): seg_waveform = waveform[start:end] mos_score = self.estimate_score(seg_waveform) start_t, end_t = start/self.sr, end/self.sr mos_score_list.append([start_t, end_t, mos_score]) if verbose: print("{:5.3f} - {:5.3f} ({:3.3f}) : {:.3f}".format(start_t, end_t, end_t-start_t, mos_score)) mos_score = np.array(mos_score_list) else: mos_score = self.estimate_score(waveform) return mos_score if __name__ == '__main__': """ Get an argument parser. """ import argparse from utils import set_seeds from whisper.audio import SAMPLE_RATE parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) # basic config parser.add_argument("--device", type=str, default="cuda" if torch.cuda.is_available() else "cpu", help="device to use for PyTorch inference") parser.add_argument("--seed", type=int, default=777, help="seed number") parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight.wav', required=False, help='path of test wav file') # parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.wav', required=False, help='path of test wav file') parser.add_argument('--test_lab_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.lab', required=False, help='path of test wav file') parser.add_argument('--sr', type=int, default=SAMPLE_RATE, required = False, help='sampling rate') parser.add_argument("--exp_dir", type=str, default='exps', help="path to experiments directory") # speech quality assessment config parser.add_argument("--sqa_ssl_model_path", type=str, default='models/sqa_models/wav2vec_small.pt', help="pretrained wav2vec base model path") parser.add_argument("--sqa_model_ckpt_path", type=str, default='models/sqa_models/model_noresqa_mos.pth', help="pretrained NORESQA-MOS model path") parser.add_argument('--sqa_nmr_wav_dir', type=str, default='/mnt/dataset/daps', required = False, help='path of clean wav file') parser.add_argument('--sqa_nmr_feat_path', type=str, default='sqa/noresqa/feat/daps_nmr_embs.pkl', required = False, help='path of nmr embedding pickle file') parser.add_argument("--sqa_nmr_chunk_time", type=float, default=3.0, help="nmr wav chunk time") parser.add_argument("--sqa_nmr_step_size", type=int, default=75, help="embedding step size") args = parser.parse_args().__dict__ args['sqa_nmr_feat_path'] = os.path.join(args['exp_dir'], args['sqa_nmr_feat_path']) set_seeds(args['seed']) test_wav_path: str = args.pop('test_wav_path') assert(os.path.exists(test_wav_path)), "No Exists File Name: {}".format(test_wav_path) test_lab_path: str = args.pop('test_lab_path') seg_arr = np.atleast_2d((np.loadtxt(test_lab_path, usecols=(0, 1))*args['sr']).astype(int)) sqa_manager = SpeechQualityAssigner(args) score = sqa_manager(test_wav_path, seg_arr)

src/sqa.py

fbdp1202-tts_data_engine-02353ab

python

load_state_dict(pretrained_dict)

#Copyright (c) Meta Platforms, Inc. and affiliates. #All rights reserved. #This source code is licensed under the license found in the #LICENSE file in the root directory of this source tree. import os import sys import math import glob import tqdm import pickle import tarfile import hashlib import subprocess import numpy as np from scipy import signal import librosa import torch import torch.nn as nn import torch.nn.functional as F from .noresqa.model import NORESQA from .utils import load_audio DAPS_DATASET_URL = 'https://zenodo.org/record/4660670/files/daps.tar.gz?download=1' DAPS_N_CLEAN_WAV_NUM = 100 import pdb def md5(fname): hash_md5 = hashlib.md5() with open(fname, "rb") as f: for chunk in iter(lambda: f.read(4096), b""): hash_md5.update(chunk) return hash_md5.hexdigest() def check_daps_dataset(tar_file_path): md5ck = md5(tar_file_path) md5gt = '303c130b7ce2e02b59c7ca5cd595a89c' if md5ck == md5gt: print('Checksum successful {}.'.format(tar_file_path)) else: raise Warning('Checksum failed {}.'.format(tar_file_path)) def download_daps_dataset(out_dir): out_file_path = os.path.join(out_dir, 'daps.tar.gz') out = subprocess.call('wget {} -O {}'.format(DAPS_DATASET_URL, out_file_path), shell=True) if out != 0: raise ValueError('Download failed {}.'.format(DAPS_DATASET_URL)) check_daps_dataset(out_file_path) def extract_targz_file(out_dir, tar_file_path): with tarfile.open(tar_file_path, "r:gz") as tar: subdir_and_files = [ tarinfo for tarinfo in tar.getmembers() if tarinfo.name.startswith("daps/clean/") ] tar.extractall(out_dir, members=subdir_and_files) def prepare_daps_dataset(nmr_wav_dir): os.makedirs(nmr_wav_dir, exist_ok=True) if not os.path.exists(os.path.join(nmr_wav_dir, '.done')): tar_file_path = os.path.join(nmr_wav_dir, 'daps.tar.gz') if not os.path.exists(tar_file_path): download_daps_dataset(nmr_wav_dir) extract_targz_file(nmr_wav_dir, tar_file_path) f = open(os.path.join(nmr_wav_dir, '.done'), 'wb') f.close() class SpeechQualityAssigner: def __init__(self, args): output_dim: int = 40 ssl_model_path: str = args['sqa_ssl_model_path'] device: str = args['device'] self.device = torch.device(device) self.sr: int = args['sr'] self.model_ckpt_path: str = args['sqa_model_ckpt_path'] self.nmr_chunk_time: float = args['sqa_nmr_chunk_time'] self.nmr_step_size: int = args['sqa_nmr_step_size'] nmr_wav_dir: str = args['sqa_nmr_wav_dir'] nmr_feat_path: str = args['sqa_nmr_feat_path'] os.makedirs(os.path.dirname(nmr_feat_path), exist_ok=True) # prepare daps dataset prepare_daps_dataset(nmr_wav_dir) self.sqa_model = NORESQA(output=output_dim, output2=output_dim, config_path=ssl_model_path) self.load_parameter(self.model_ckpt_path) self.sqa_model.to(self.device) self.sqa_model.eval() nmr_embs = self.load_nmr_emb(nmr_feat_path, nmr_wav_dir) self.nmr_embs = nmr_embs.to(self.device) def load_parameter(self, model_ckpt_path): model_dict = self.sqa_model.state_dict() params = torch.load(model_ckpt_path, map_location="cpu")['state_dict'] pretrained_dict = {} for name, param in params.items(): name = name.replace('module.', '') if 'module' in name else name pretrained_dict[name] = param model_dict.update(pretrained_dict) self.sqa_model.load_state_dict(pretrained_dict) def pred_noresqa_mos(self, test_feat, nmr_feat=None): with torch.no_grad(): score = self.sqa_model(nmr_feat, test_feat).detach().cpu().numpy()[0] return score def extract_nmr_embbeddings(self, nmr_wav_dir): nmr_wav_npy = os.path.join(nmr_wav_dir, 'clean_nmr_n100_{}ms.npy'.format(int(self.nmr_chunk_time*1000))) if not os.path.exists(nmr_wav_npy): print(">>Prepare nmr waveforms") nmr_wav_list = sorted(glob.glob(nmr_wav_dir+"/daps/clean/*.wav")) nmr_wav_list = [wav_path for wav_path in nmr_wav_list if not wav_path.startswith('.')] assert(len(nmr_wav_list) == DAPS_N_CLEAN_WAV_NUM) nmr_wav_arr = [] for nmr_wav_path in wav_nmr_list: nmr_waveform = load_audio(nmr_wav_path, sr=self.sr, chunk_time=self.nmr_chunk_time) # nmr_waveform shape: (wav_sr*max_nmr_wav_time,) nmr_wav_arr.append(nmr_waveform) nmr_wav_arr = np.stack(nmr_wav_arr) np.save(nmr_wav_npy, nmr_wav_arr) else: print(">>Load prepared clean nmr waveforms") nmr_wav_arr = np.load(nmr_wav_npy) nmr_feat = torch.FloatTensor(nmr_wav_arr).to(self.device) nmr_embs = [] for nmr_id in tqdm.tqdm(range(nmr_feat.shape[0])): nmr_feat = nmr_feat[nmr_id:nmr_id+1] with torch.no_grad(): nmr_emb = self.sqa_model.extract_embeddings(nmr_feat) nmr_embs.append(nmr_emb.detach().cpu()) nmr_embs = torch.vstack(nmr_embs) return nmr_embs def load_nmr_emb(self, nmr_feat_path, nmr_wav_dir, overwrite=False): if overwrite or not os.path.exists(nmr_feat_path): nmr_embs = self.extract_nmr_embbeddings(nmr_wav_dir) with open(nmr_feat_path, 'wb') as wf: pickle.dump(nmr_embs, wf, protocol=pickle.HIGHEST_PROTOCOL) else: with open(nmr_feat_path, 'rb') as rf: nmr_embs = pickle.load(rf) return nmr_embs def estimate_score(self, waveform, max_time=60): """ Parameters ---------- waveform: torch.FloatTensor (n_samples,) Input Raw Waveform. Returns ---------- mos_score : float Detection score. """ waveform = waveform.to(self.device).unsqueeze(0) with torch.no_grad(): nmr_embs = self.nmr_embs # we just use max_time if record has more than max_time max_frames = max_time*self.sr if max_frames < waveform.shape[1]: waveform = waveform[:, :max_frames] test_embs = self.sqa_model.extract_embeddings(waveform) test_embs = test_embs.repeat(nmr_embs.shape[0], 1, 1) n_test_frames = test_embs.shape[2] n_nmr_frames = self.nmr_embs.shape[2] nmr_step_size = self.nmr_step_size mos_scores = [] n_chunk = max(1, int(math.ceil(n_test_frames-n_nmr_frames+nmr_step_size)/nmr_step_size)) for n in range(n_chunk): start = nmr_step_size*n end = min(start + n_nmr_frames, n_test_frames) input_test_embs = test_embs[:,:,start:end] results = self.sqa_model.

estimate_score_bw_embs(nmr_embs[:,:,:end-start], input_test_embs)

mos_score = results['mos_score'].mean().detach().cpu().item() mos_scores.append(mos_score) final_mos_score = np.mean(mos_scores) return final_mos_score def __call__(self, input_audio_path, seg_arr=None, verbose=False): waveform = load_audio(input_audio_path, sr=self.sr) waveform = torch.FloatTensor(waveform) if seg_arr is not None: mos_score_list = [] for start, end in zip(seg_arr[:,0], seg_arr[:,1]): seg_waveform = waveform[start:end] mos_score = self.estimate_score(seg_waveform) start_t, end_t = start/self.sr, end/self.sr mos_score_list.append([start_t, end_t, mos_score]) if verbose: print("{:5.3f} - {:5.3f} ({:3.3f}) : {:.3f}".format(start_t, end_t, end_t-start_t, mos_score)) mos_score = np.array(mos_score_list) else: mos_score = self.estimate_score(waveform) return mos_score if __name__ == '__main__': """ Get an argument parser. """ import argparse from utils import set_seeds from whisper.audio import SAMPLE_RATE parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) # basic config parser.add_argument("--device", type=str, default="cuda" if torch.cuda.is_available() else "cpu", help="device to use for PyTorch inference") parser.add_argument("--seed", type=int, default=777, help="seed number") parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight.wav', required=False, help='path of test wav file') # parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.wav', required=False, help='path of test wav file') parser.add_argument('--test_lab_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.lab', required=False, help='path of test wav file') parser.add_argument('--sr', type=int, default=SAMPLE_RATE, required = False, help='sampling rate') parser.add_argument("--exp_dir", type=str, default='exps', help="path to experiments directory") # speech quality assessment config parser.add_argument("--sqa_ssl_model_path", type=str, default='models/sqa_models/wav2vec_small.pt', help="pretrained wav2vec base model path") parser.add_argument("--sqa_model_ckpt_path", type=str, default='models/sqa_models/model_noresqa_mos.pth', help="pretrained NORESQA-MOS model path") parser.add_argument('--sqa_nmr_wav_dir', type=str, default='/mnt/dataset/daps', required = False, help='path of clean wav file') parser.add_argument('--sqa_nmr_feat_path', type=str, default='sqa/noresqa/feat/daps_nmr_embs.pkl', required = False, help='path of nmr embedding pickle file') parser.add_argument("--sqa_nmr_chunk_time", type=float, default=3.0, help="nmr wav chunk time") parser.add_argument("--sqa_nmr_step_size", type=int, default=75, help="embedding step size") args = parser.parse_args().__dict__ args['sqa_nmr_feat_path'] = os.path.join(args['exp_dir'], args['sqa_nmr_feat_path']) set_seeds(args['seed']) test_wav_path: str = args.pop('test_wav_path') assert(os.path.exists(test_wav_path)), "No Exists File Name: {}".format(test_wav_path) test_lab_path: str = args.pop('test_lab_path') seg_arr = np.atleast_2d((np.loadtxt(test_lab_path, usecols=(0, 1))*args['sr']).astype(int)) sqa_manager = SpeechQualityAssigner(args) score = sqa_manager(test_wav_path, seg_arr)

src/sqa.py

fbdp1202-tts_data_engine-02353ab

python

estimate_score_bw_embs(nmr_embs[:,:,:end-start], input_test_embs)

import openai from embedding.base_embedding import BaseEmbedding class OpenAIEmbedding(BaseEmbedding): """Wrapper around OpenAI embedding models.""" def __init__( self, openai_api_key: str, model_name: str = "text-embedding-ada-002" ) -> None: openai.api_key = openai_api_key self.model = model_name def generate( self, input: str, ) -> str: embedding = openai.

Embedding.create(input=input, model=self.model)

return embedding["data"][0]["embedding"]

api/src/embedding/openai.py

neo4j-NaLLM-ca04662

python

Embedding.create(input=input, model=self.model)

import os import json import math import pandas as pd import numpy as np import torch import torch.nn.functional as F import torchaudio from .utils import load_audio from .beats.BEATs import BEATs, BEATsConfig class SoundClassifier: def __init__(self, args): device: str = args['device'] self.device = torch.device(device) self.sr = args['sr'] # load audioset label infomation ontology_file_path: str = args['sc_ontology_file_path'] labels_indices_csv_path: str = args['sc_labels_indices_csv'] child_dict, code2name = self.load_info_audioset(ontology_file_path, labels_indices_csv_path) self.child_dict = child_dict self.code2name = code2name # load BEATs model_ckpt_path: str = args['beats_model_ckpt_path'] assert(os.path.exists(model_ckpt_path)), print('No Exists BEATs model file: {}'.format(model_ckpt_path)) checkpoint = torch.load(model_ckpt_path) cfg = BEATsConfig(checkpoint['cfg']) self.model = BEATs(cfg) self.model.load_state_dict(checkpoint['model']) self.model.to(self.device) self.model.eval() self.label_dict = checkpoint['label_dict'] def load_info_audioset(self, ontology_file_path, labels_indices_csv_path): child_dict = self.get_child_dict(ontology_file_path) labels = pd.read_csv(labels_indices_csv_path) code2name = { mid:name for mid, name in zip(labels['mid'].to_list(), labels['display_name'].to_list()) } return child_dict, code2name @staticmethod def get_child_dict(ontology_file_path): """ File: data/ontology.json Desciption: AudioSet provide Each Class Information, such as child_ids, restrictions etc., Var: 'id': encoded class code (index) 'name': class name 'restrictions': Class type (None, abstract, blacklist) """ with open(ontology_file_path, 'r', encoding='utf8')as fp: ontology = json.load(fp) # make dictionary which contain each class information child_dict = {} for audio_class in ontology: cur_id = audio_class['id'] cur_name = audio_class['name'] cur_child_ids = audio_class['child_ids'] # cur_restriction = audio_class['restrictions'] child_dict[cur_id] = (cur_child_ids, cur_name) return child_dict def predict(self, waveform, mask=None, chunk_time=1.0, step_ratio=0.1, return_all=False): """ Parameters ---------- waveform: torch.FloatTensor (n_samples,) Input Raw Waveform. mask: torch.BoolTensor (n_samples,) Input Mask chunk_time: float Chunk time step_ratio: float Step ratio Returns ---------- preds : torch.FloatTensor (n_classes,) posterior of sound classification. """ chunk_size = int(chunk_time * self.sr) step_size = chunk_size * step_ratio waveform = waveform.to(self.device).unsqueeze(0) n_test_frames = waveform.shape[1] pred_list = [] n_chunk = max(1, int(math.ceil((n_test_frames-chunk_size+step_size)/step_size))) for chunk_id in range(n_chunk): start = int(step_size * chunk_id) end = min(start + chunk_size, n_test_frames) duration = int(end-start) chunk_waveform = torch.zeros(1,chunk_size).to(self.device) chunk_waveform[:,:duration] = waveform[:,start:end] chunk_mask = None if mask is not None: chunk_mask = torch.zeros(1, chunk_size, dtype=torch.bool).to(self.device) chunk_mask[:,:duration] = mask[start:end] with torch.no_grad(): pred = self.model.

extract_features(chunk_waveform, padding_mask=chunk_mask)[0]

pred = pred.squeeze(0).detach().cpu() pred_list.append(pred) preds = torch.stack(pred_list) # pred = preds.mean(0) pred, _ = preds.max(0) if return_all: return pred, preds else: return pred def pred_topk_with_label(self, waveform, mask=None, chunk_time=1.0, step_ratio=0.1, topk=5): pred = self.predict(waveform, mask=mask, chunk_time=chunk_time, step_ratio=step_ratio) probs, indices = pred.topk(k=topk) codes = [self.label_dict[idx.item()] for idx in indices] names = [self.code2name[code] for code in codes] results = [] for (name, code, prob) in zip(names, codes, probs): results.append((code, name, prob.item())) return results def __call__(self, input_audio_path, seg_arr=None): waveform = load_audio(input_audio_path, sr=self.sr) waveform = torch.FloatTensor(waveform) if seg_arr is not None: pred_list = [] for start, end in zip(seg_arr[:,0], seg_arr[:,1]): seg_waveform = waveform[start:end] pred = self.predict(seg_waveform) pred_list.append(pred.numpy()) pred = np.stack(pred_list) else: pred = self.predict(waveform)[None,:] return pred if __name__ == "__main__": import argparse from utils import set_seeds from whisper.audio import SAMPLE_RATE parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) # basic config parser.add_argument("--device", type=str, default="cuda" if torch.cuda.is_available() else "cpu", help="device to use for PyTorch inference") parser.add_argument("--seed", type=int, default=777, help="seed number") parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight.wav', required=False, help='path of test wav file') # parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.wav', required=False, help='path of test wav file') parser.add_argument('--test_lab_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.lab', required=False, help='path of test wav file') parser.add_argument('--sr', type=int, default=SAMPLE_RATE, required = False, help='sampling rate') # sound classification config parser.add_argument('--sc_ontology_file_path', type=str, default='data/BEATs/ontology.json', required=False, help='path of audioset ontology') parser.add_argument('--sc_labels_indices_csv', type=str, default='data/BEATs/class_labels_indices.csv', required=False, help='csv file of containing audioset label indices') parser.add_argument("--beats_model_ckpt_path", type=str, default='models/sc_models/BEATs_iter3_plus_AS2M_finetuned_on_AS2M_cpt2.pt', help="pretrained BEATs model path") args = parser.parse_args().__dict__ set_seeds(args['seed']) test_wav_path: str = args.pop('test_wav_path') assert(os.path.exists(test_wav_path)), "No Exists File Name: {}".format(test_wav_path) test_lab_path: str = args.pop('test_lab_path') seg_arr = np.atleast_2d((np.loadtxt(test_lab_path, usecols=(0, 1))*args['sr']).astype(int)) sc_manager = SoundClassifier(args) results = sc_manager(test_wav_path, seg_arr)

src/classify.py

fbdp1202-tts_data_engine-02353ab

python

extract_features(chunk_waveform, padding_mask=chunk_mask)[0]

from typing import Any, Dict, List, Optional from neo4j import GraphDatabase, exceptions node_properties_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE NOT type = "RELATIONSHIP" AND elementType = "node" WITH label AS nodeLabels, collect({property:property, type:type}) AS properties RETURN {labels: nodeLabels, properties: properties} AS output """ rel_properties_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE NOT type = "RELATIONSHIP" AND elementType = "relationship" WITH label AS nodeLabels, collect({property:property, type:type}) AS properties RETURN {type: nodeLabels, properties: properties} AS output """ rel_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE type = "RELATIONSHIP" AND elementType = "node" RETURN "(:" + label + ")-[:" + property + "]->(:" + toString(other[0]) + ")" AS output """ def schema_text(node_props, rel_props, rels) -> str: return f""" This is the schema representation of the Neo4j database. Node properties are the following: {node_props} Relationship properties are the following: {rel_props} The relationships are the following {rels} """ class Neo4jDatabase: def __init__( self, host: str = "neo4j://localhost:7687", user: str = "neo4j", password: str = "pleaseletmein", database: str = "neo4j", read_only: bool = True, ) -> None: """Initialize a neo4j database""" self._driver = GraphDatabase.driver(host, auth=(user, password)) self._database = database self._read_only = read_only self.schema = "" # Verify connection try: self._driver.verify_connectivity() except exceptions.ServiceUnavailable: raise ValueError( "Could not connect to Neo4j database. " "Please ensure that the url is correct" ) except exceptions.AuthError: raise ValueError( "Could not connect to Neo4j database. " "Please ensure that the username and password are correct" ) try: self.refresh_schema() except: raise ValueError("Missing APOC Core plugin") @staticmethod def _execute_read_only_query(tx, cypher_query: str, params: Optional[Dict] = {}): result = tx.run(cypher_query, params) return [r.data() for r in result] def query( self, cypher_query: str, params: Optional[Dict] = {} ) -> List[Dict[str, Any]]: with self._driver.session(database=self._database) as session: try: if self._read_only: result = session.read_transaction( self._execute_read_only_query, cypher_query, params ) return result else: result = session.run(cypher_query, params) # Limit to at most 10 results return [r.data() for r in result] # Catch Cypher syntax errors except exceptions.

CypherSyntaxError as e:

return [ { "code": "invalid_cypher", "message": f"Invalid Cypher statement due to an error: {e}", } ] except exceptions.ClientError as e: # Catch access mode errors if e.code == "Neo.ClientError.Statement.AccessMode": return [ { "code": "error", "message": "Couldn't execute the query due to the read only access to Neo4j", } ] else: return [{"code": "error", "message": e}] def refresh_schema(self) -> None: node_props = [el["output"] for el in self.query(node_properties_query)] rel_props = [el["output"] for el in self.query(rel_properties_query)] rels = [el["output"] for el in self.query(rel_query)] schema = schema_text(node_props, rel_props, rels) self.schema = schema print(schema) def check_if_empty(self) -> bool: data = self.query( """ MATCH (n) WITH count(n) as c RETURN CASE WHEN c > 0 THEN true ELSE false END AS output """ ) return data[0]["output"]

api/src/driver/neo4j.py

neo4j-NaLLM-ca04662

python

CypherSyntaxError as e:

#Copyright (c) Meta Platforms, Inc. and affiliates. #All rights reserved. #This source code is licensed under the license found in the #LICENSE file in the root directory of this source tree. import os import sys import math import glob import tqdm import pickle import tarfile import hashlib import subprocess import numpy as np from scipy import signal import librosa import torch import torch.nn as nn import torch.nn.functional as F from .noresqa.model import NORESQA from .utils import load_audio DAPS_DATASET_URL = 'https://zenodo.org/record/4660670/files/daps.tar.gz?download=1' DAPS_N_CLEAN_WAV_NUM = 100 import pdb def md5(fname): hash_md5 = hashlib.md5() with open(fname, "rb") as f: for chunk in iter(lambda: f.read(4096), b""): hash_md5.update(chunk) return hash_md5.hexdigest() def check_daps_dataset(tar_file_path): md5ck = md5(tar_file_path) md5gt = '303c130b7ce2e02b59c7ca5cd595a89c' if md5ck == md5gt: print('Checksum successful {}.'.format(tar_file_path)) else: raise Warning('Checksum failed {}.'.format(tar_file_path)) def download_daps_dataset(out_dir): out_file_path = os.path.join(out_dir, 'daps.tar.gz') out = subprocess.call('wget {} -O {}'.format(DAPS_DATASET_URL, out_file_path), shell=True) if out != 0: raise ValueError('Download failed {}.'.format(DAPS_DATASET_URL)) check_daps_dataset(out_file_path) def extract_targz_file(out_dir, tar_file_path): with tarfile.open(tar_file_path, "r:gz") as tar: subdir_and_files = [ tarinfo for tarinfo in tar.getmembers() if tarinfo.name.startswith("daps/clean/") ] tar.extractall(out_dir, members=subdir_and_files) def prepare_daps_dataset(nmr_wav_dir): os.makedirs(nmr_wav_dir, exist_ok=True) if not os.path.exists(os.path.join(nmr_wav_dir, '.done')): tar_file_path = os.path.join(nmr_wav_dir, 'daps.tar.gz') if not os.path.exists(tar_file_path): download_daps_dataset(nmr_wav_dir) extract_targz_file(nmr_wav_dir, tar_file_path) f = open(os.path.join(nmr_wav_dir, '.done'), 'wb') f.close() class SpeechQualityAssigner: def __init__(self, args): output_dim: int = 40 ssl_model_path: str = args['sqa_ssl_model_path'] device: str = args['device'] self.device = torch.device(device) self.sr: int = args['sr'] self.model_ckpt_path: str = args['sqa_model_ckpt_path'] self.nmr_chunk_time: float = args['sqa_nmr_chunk_time'] self.nmr_step_size: int = args['sqa_nmr_step_size'] nmr_wav_dir: str = args['sqa_nmr_wav_dir'] nmr_feat_path: str = args['sqa_nmr_feat_path'] os.makedirs(os.path.dirname(nmr_feat_path), exist_ok=True) # prepare daps dataset prepare_daps_dataset(nmr_wav_dir) self.sqa_model = NORESQA(output=output_dim, output2=output_dim, config_path=ssl_model_path) self.load_parameter(self.model_ckpt_path) self.sqa_model.to(self.device) self.sqa_model.eval() nmr_embs = self.load_nmr_emb(nmr_feat_path, nmr_wav_dir) self.nmr_embs = nmr_embs.to(self.device) def load_parameter(self, model_ckpt_path): model_dict = self.sqa_model.state_dict() params = torch.load(model_ckpt_path, map_location="cpu")['state_dict'] pretrained_dict = {} for name, param in params.items(): name = name.replace('module.', '') if 'module' in name else name pretrained_dict[name] = param model_dict.update(pretrained_dict) self.sqa_model.load_state_dict(pretrained_dict) def pred_noresqa_mos(self, test_feat, nmr_feat=None): with torch.no_grad(): score = self.sqa_model(nmr_feat, test_feat).detach().cpu().numpy()[0] return score def extract_nmr_embbeddings(self, nmr_wav_dir): nmr_wav_npy = os.path.join(nmr_wav_dir, 'clean_nmr_n100_{}ms.npy'.format(int(self.nmr_chunk_time*1000))) if not os.path.exists(nmr_wav_npy): print(">>Prepare nmr waveforms") nmr_wav_list = sorted(glob.glob(nmr_wav_dir+"/daps/clean/*.wav")) nmr_wav_list = [wav_path for wav_path in nmr_wav_list if not wav_path.startswith('.')] assert(len(nmr_wav_list) == DAPS_N_CLEAN_WAV_NUM) nmr_wav_arr = [] for nmr_wav_path in wav_nmr_list: nmr_waveform = load_audio(nmr_wav_path, sr=self.sr, chunk_time=self.nmr_chunk_time) # nmr_waveform shape: (wav_sr*max_nmr_wav_time,) nmr_wav_arr.append(nmr_waveform) nmr_wav_arr = np.stack(nmr_wav_arr) np.save(nmr_wav_npy, nmr_wav_arr) else: print(">>Load prepared clean nmr waveforms") nmr_wav_arr = np.load(nmr_wav_npy) nmr_feat = torch.FloatTensor(nmr_wav_arr).to(self.device) nmr_embs = [] for nmr_id in tqdm.tqdm(range(nmr_feat.shape[0])): nmr_feat = nmr_feat[nmr_id:nmr_id+1] with torch.no_grad(): nmr_emb = self.sqa_model.

extract_embeddings(nmr_feat)

nmr_embs.append(nmr_emb.detach().cpu()) nmr_embs = torch.vstack(nmr_embs) return nmr_embs def load_nmr_emb(self, nmr_feat_path, nmr_wav_dir, overwrite=False): if overwrite or not os.path.exists(nmr_feat_path): nmr_embs = self.extract_nmr_embbeddings(nmr_wav_dir) with open(nmr_feat_path, 'wb') as wf: pickle.dump(nmr_embs, wf, protocol=pickle.HIGHEST_PROTOCOL) else: with open(nmr_feat_path, 'rb') as rf: nmr_embs = pickle.load(rf) return nmr_embs def estimate_score(self, waveform, max_time=60): """ Parameters ---------- waveform: torch.FloatTensor (n_samples,) Input Raw Waveform. Returns ---------- mos_score : float Detection score. """ waveform = waveform.to(self.device).unsqueeze(0) with torch.no_grad(): nmr_embs = self.nmr_embs # we just use max_time if record has more than max_time max_frames = max_time*self.sr if max_frames < waveform.shape[1]: waveform = waveform[:, :max_frames] test_embs = self.sqa_model.extract_embeddings(waveform) test_embs = test_embs.repeat(nmr_embs.shape[0], 1, 1) n_test_frames = test_embs.shape[2] n_nmr_frames = self.nmr_embs.shape[2] nmr_step_size = self.nmr_step_size mos_scores = [] n_chunk = max(1, int(math.ceil(n_test_frames-n_nmr_frames+nmr_step_size)/nmr_step_size)) for n in range(n_chunk): start = nmr_step_size*n end = min(start + n_nmr_frames, n_test_frames) input_test_embs = test_embs[:,:,start:end] results = self.sqa_model.estimate_score_bw_embs(nmr_embs[:,:,:end-start], input_test_embs) mos_score = results['mos_score'].mean().detach().cpu().item() mos_scores.append(mos_score) final_mos_score = np.mean(mos_scores) return final_mos_score def __call__(self, input_audio_path, seg_arr=None, verbose=False): waveform = load_audio(input_audio_path, sr=self.sr) waveform = torch.FloatTensor(waveform) if seg_arr is not None: mos_score_list = [] for start, end in zip(seg_arr[:,0], seg_arr[:,1]): seg_waveform = waveform[start:end] mos_score = self.estimate_score(seg_waveform) start_t, end_t = start/self.sr, end/self.sr mos_score_list.append([start_t, end_t, mos_score]) if verbose: print("{:5.3f} - {:5.3f} ({:3.3f}) : {:.3f}".format(start_t, end_t, end_t-start_t, mos_score)) mos_score = np.array(mos_score_list) else: mos_score = self.estimate_score(waveform) return mos_score if __name__ == '__main__': """ Get an argument parser. """ import argparse from utils import set_seeds from whisper.audio import SAMPLE_RATE parser = argparse.ArgumentParser(formatter_class=argparse.ArgumentDefaultsHelpFormatter) # basic config parser.add_argument("--device", type=str, default="cuda" if torch.cuda.is_available() else "cpu", help="device to use for PyTorch inference") parser.add_argument("--seed", type=int, default=777, help="seed number") parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight.wav', required=False, help='path of test wav file') # parser.add_argument('--test_wav_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.wav', required=False, help='path of test wav file') parser.add_argument('--test_lab_path', type=str, default='/mnt/FRCRN/The_Dark_Knight_SE_FRCRN.lab', required=False, help='path of test wav file') parser.add_argument('--sr', type=int, default=SAMPLE_RATE, required = False, help='sampling rate') parser.add_argument("--exp_dir", type=str, default='exps', help="path to experiments directory") # speech quality assessment config parser.add_argument("--sqa_ssl_model_path", type=str, default='models/sqa_models/wav2vec_small.pt', help="pretrained wav2vec base model path") parser.add_argument("--sqa_model_ckpt_path", type=str, default='models/sqa_models/model_noresqa_mos.pth', help="pretrained NORESQA-MOS model path") parser.add_argument('--sqa_nmr_wav_dir', type=str, default='/mnt/dataset/daps', required = False, help='path of clean wav file') parser.add_argument('--sqa_nmr_feat_path', type=str, default='sqa/noresqa/feat/daps_nmr_embs.pkl', required = False, help='path of nmr embedding pickle file') parser.add_argument("--sqa_nmr_chunk_time", type=float, default=3.0, help="nmr wav chunk time") parser.add_argument("--sqa_nmr_step_size", type=int, default=75, help="embedding step size") args = parser.parse_args().__dict__ args['sqa_nmr_feat_path'] = os.path.join(args['exp_dir'], args['sqa_nmr_feat_path']) set_seeds(args['seed']) test_wav_path: str = args.pop('test_wav_path') assert(os.path.exists(test_wav_path)), "No Exists File Name: {}".format(test_wav_path) test_lab_path: str = args.pop('test_lab_path') seg_arr = np.atleast_2d((np.loadtxt(test_lab_path, usecols=(0, 1))*args['sr']).astype(int)) sqa_manager = SpeechQualityAssigner(args) score = sqa_manager(test_wav_path, seg_arr)

src/sqa.py

fbdp1202-tts_data_engine-02353ab

python

extract_embeddings(nmr_feat)

from typing import Any, Dict, List, Optional from neo4j import GraphDatabase, exceptions node_properties_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE NOT type = "RELATIONSHIP" AND elementType = "node" WITH label AS nodeLabels, collect({property:property, type:type}) AS properties RETURN {labels: nodeLabels, properties: properties} AS output """ rel_properties_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE NOT type = "RELATIONSHIP" AND elementType = "relationship" WITH label AS nodeLabels, collect({property:property, type:type}) AS properties RETURN {type: nodeLabels, properties: properties} AS output """ rel_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE type = "RELATIONSHIP" AND elementType = "node" RETURN "(:" + label + ")-[:" + property + "]->(:" + toString(other[0]) + ")" AS output """ def schema_text(node_props, rel_props, rels) -> str: return f""" This is the schema representation of the Neo4j database. Node properties are the following: {node_props} Relationship properties are the following: {rel_props} The relationships are the following {rels} """ class Neo4jDatabase: def __init__( self, host: str = "neo4j://localhost:7687", user: str = "neo4j", password: str = "pleaseletmein", database: str = "neo4j", read_only: bool = True, ) -> None: """Initialize a neo4j database""" self._driver = GraphDatabase.

driver(host, auth=(user, password))

self._database = database self._read_only = read_only self.schema = "" # Verify connection try: self._driver.verify_connectivity() except exceptions.ServiceUnavailable: raise ValueError( "Could not connect to Neo4j database. " "Please ensure that the url is correct" ) except exceptions.AuthError: raise ValueError( "Could not connect to Neo4j database. " "Please ensure that the username and password are correct" ) try: self.refresh_schema() except: raise ValueError("Missing APOC Core plugin") @staticmethod def _execute_read_only_query(tx, cypher_query: str, params: Optional[Dict] = {}): result = tx.run(cypher_query, params) return [r.data() for r in result] def query( self, cypher_query: str, params: Optional[Dict] = {} ) -> List[Dict[str, Any]]: with self._driver.session(database=self._database) as session: try: if self._read_only: result = session.read_transaction( self._execute_read_only_query, cypher_query, params ) return result else: result = session.run(cypher_query, params) # Limit to at most 10 results return [r.data() for r in result] # Catch Cypher syntax errors except exceptions.CypherSyntaxError as e: return [ { "code": "invalid_cypher", "message": f"Invalid Cypher statement due to an error: {e}", } ] except exceptions.ClientError as e: # Catch access mode errors if e.code == "Neo.ClientError.Statement.AccessMode": return [ { "code": "error", "message": "Couldn't execute the query due to the read only access to Neo4j", } ] else: return [{"code": "error", "message": e}] def refresh_schema(self) -> None: node_props = [el["output"] for el in self.query(node_properties_query)] rel_props = [el["output"] for el in self.query(rel_properties_query)] rels = [el["output"] for el in self.query(rel_query)] schema = schema_text(node_props, rel_props, rels) self.schema = schema print(schema) def check_if_empty(self) -> bool: data = self.query( """ MATCH (n) WITH count(n) as c RETURN CASE WHEN c > 0 THEN true ELSE false END AS output """ ) return data[0]["output"]

api/src/driver/neo4j.py

neo4j-NaLLM-ca04662

python

driver(host, auth=(user, password))

from typing import Any, Dict, List, Optional from neo4j import GraphDatabase, exceptions node_properties_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE NOT type = "RELATIONSHIP" AND elementType = "node" WITH label AS nodeLabels, collect({property:property, type:type}) AS properties RETURN {labels: nodeLabels, properties: properties} AS output """ rel_properties_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE NOT type = "RELATIONSHIP" AND elementType = "relationship" WITH label AS nodeLabels, collect({property:property, type:type}) AS properties RETURN {type: nodeLabels, properties: properties} AS output """ rel_query = """ CALL apoc.meta.data() YIELD label, other, elementType, type, property WHERE type = "RELATIONSHIP" AND elementType = "node" RETURN "(:" + label + ")-[:" + property + "]->(:" + toString(other[0]) + ")" AS output """ def schema_text(node_props, rel_props, rels) -> str: return f""" This is the schema representation of the Neo4j database. Node properties are the following: {node_props} Relationship properties are the following: {rel_props} The relationships are the following {rels} """ class Neo4jDatabase: def __init__( self, host: str = "neo4j://localhost:7687", user: str = "neo4j", password: str = "pleaseletmein", database: str = "neo4j", read_only: bool = True, ) -> None: """Initialize a neo4j database""" self._driver = GraphDatabase.driver(host, auth=(user, password)) self._database = database self._read_only = read_only self.schema = "" # Verify connection try: self._driver.verify_connectivity() except exceptions.ServiceUnavailable: raise ValueError( "Could not connect to Neo4j database. " "Please ensure that the url is correct" ) except exceptions.AuthError: raise ValueError( "Could not connect to Neo4j database. " "Please ensure that the username and password are correct" ) try: self.refresh_schema() except: raise ValueError("Missing APOC Core plugin") @staticmethod def _execute_read_only_query(tx, cypher_query: str, params: Optional[Dict] = {}): result = tx.run(cypher_query, params) return [r.data() for r in result] def query( self, cypher_query: str, params: Optional[Dict] = {} ) -> List[Dict[str, Any]]: with self._driver.session(database=self._database) as session: try: if self._read_only: result = session.read_transaction( self._execute_read_only_query, cypher_query, params ) return result else: result = session.run(cypher_query, params) # Limit to at most 10 results return [r.data() for r in result] # Catch Cypher syntax errors except exceptions.CypherSyntaxError as e: return [ { "code": "invalid_cypher", "message": f"Invalid Cypher statement due to an error: {e}", } ] except exceptions.

ClientError as e:

# Catch access mode errors if e.code == "Neo.ClientError.Statement.AccessMode": return [ { "code": "error", "message": "Couldn't execute the query due to the read only access to Neo4j", } ] else: return [{"code": "error", "message": e}] def refresh_schema(self) -> None: node_props = [el["output"] for el in self.query(node_properties_query)] rel_props = [el["output"] for el in self.query(rel_properties_query)] rels = [el["output"] for el in self.query(rel_query)] schema = schema_text(node_props, rel_props, rels) self.schema = schema print(schema) def check_if_empty(self) -> bool: data = self.query( """ MATCH (n) WITH count(n) as c RETURN CASE WHEN c > 0 THEN true ELSE false END AS output """ ) return data[0]["output"]

api/src/driver/neo4j.py

neo4j-NaLLM-ca04662

python

ClientError as e:

#!/bin/env python3 """ This script describes a simple usage of the library. You can see a breakdown of the individual steps in the README.md file. """ from acad_gpt.datastore import RedisDataStore, RedisDataStoreConfig ## set the following ENVIRONMENT Variables before running this script # Import necessary modules from acad_gpt.environment import OPENAI_API_KEY, REDIS_HOST, REDIS_PASSWORD, REDIS_PORT from acad_gpt.llm_client import ChatGPTClient, ChatGPTConfig, EmbeddingClient, EmbeddingConfig from acad_gpt.memory import MemoryManager # Instantiate an EmbeddingConfig object with the OpenAI API key embedding_config = EmbeddingConfig(api_key=OPENAI_API_KEY) # Instantiate an EmbeddingClient object with the EmbeddingConfig object embed_client = EmbeddingClient(config=embedding_config) # Instantiate a RedisDataStoreConfig object with the Redis connection details redis_datastore_config = RedisDataStoreConfig( host=REDIS_HOST, port=REDIS_PORT, password=REDIS_PASSWORD, ) # Instantiate a RedisDataStore object with the RedisDataStoreConfig object redis_datastore = RedisDataStore(config=redis_datastore_config) # Instantiate a MemoryManager object with the RedisDataStore object and EmbeddingClient object memory_manager = MemoryManager(datastore=redis_datastore, embed_client=embed_client, topk=1) # Instantiate a ChatGPTConfig object with the OpenAI API key and verbose set to True chat_gpt_config = ChatGPTConfig(api_key=OPENAI_API_KEY, verbose=False) # Instantiate a ChatGPTClient object with the ChatGPTConfig object and MemoryManager object chat_gpt_client = ChatGPTClient(config=chat_gpt_config, memory_manager=memory_manager) # Initialize conversation_id to None conversation_id = None # Start the chatbot loop while True: # Prompt the user for input user_message = input("\n Please enter your message: ") # Use the ChatGPTClient object to generate a response response = chat_gpt_client.

converse(message=user_message, conversation_id=conversation_id)

# Update the conversation_id with the conversation_id from the response conversation_id = response.conversation_id # Print the response generated by the chatbot print(response.chat_gpt_answer)

examples/simple_usage.py

continuum-llms-acad-gpt-9513178

python

converse(message=user_message, conversation_id=conversation_id)

from acad_gpt.datastore.config import RedisDataStoreConfig from acad_gpt.datastore.redis import RedisDataStore from acad_gpt.environment import OPENAI_API_KEY, REDIS_HOST, REDIS_PASSWORD, REDIS_PORT from acad_gpt.llm_client.openai.embedding.config import EmbeddingConfig from acad_gpt.llm_client.openai.embedding.embedding_client import EmbeddingClient from acad_gpt.memory.manager import MemoryManager from acad_gpt.memory.memory import Memory class TestMemoryManager: def setup(self): # create a redis datastore redis_datastore_config = RedisDataStoreConfig( host=REDIS_HOST, port=REDIS_PORT, password=REDIS_PASSWORD, ) self.datastore = RedisDataStore(redis_datastore_config, do_flush_data=True) # create an openai embedding client embedding_client_config = EmbeddingConfig(api_key=OPENAI_API_KEY) self.embedding_client = EmbeddingClient(embedding_client_config) def test_conversation_insertion_and_deletion(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # assert that the memory manager is initially empty assert len(memory_manager.conversations) == 0 # add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # remove the conversation from the memory manager memory_manager.remove_conversation(Memory(conversation_id="1")) # assert that the memory manager is empty assert len(memory_manager.conversations) == 0 def test_adding_messages_to_conversation(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # add a message to the conversation memory_manager.add_message(conversation_id="1", human="Hello", assistant="Hello. How are you?") # get messages for that conversation messages = memory_manager.

get_messages(conversation_id="1", query="Hello")

# assert that the message was added assert len(messages) == 1 # assert that the message is correct assert messages[0].text == "Human: Hello\nAssistant: Hello. How are you?" assert messages[0].conversation_id == "1"

tests/test_memory_manager.py

continuum-llms-acad-gpt-9513178

python

get_messages(conversation_id="1", query="Hello")

from acad_gpt.datastore.config import RedisDataStoreConfig from acad_gpt.datastore.redis import RedisDataStore from acad_gpt.environment import OPENAI_API_KEY, REDIS_HOST, REDIS_PASSWORD, REDIS_PORT from acad_gpt.llm_client.openai.embedding.config import EmbeddingConfig from acad_gpt.llm_client.openai.embedding.embedding_client import EmbeddingClient from acad_gpt.memory.manager import MemoryManager from acad_gpt.memory.memory import Memory class TestMemoryManager: def setup(self): # create a redis datastore redis_datastore_config = RedisDataStoreConfig( host=REDIS_HOST, port=REDIS_PORT, password=REDIS_PASSWORD, ) self.datastore = RedisDataStore(redis_datastore_config, do_flush_data=True) # create an openai embedding client embedding_client_config = EmbeddingConfig(api_key=OPENAI_API_KEY) self.embedding_client = EmbeddingClient(embedding_client_config) def test_conversation_insertion_and_deletion(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # assert that the memory manager is initially empty assert len(memory_manager.conversations) == 0 # add a conversation to the memory manager memory_manager.

add_conversation(Memory(conversation_id="1"))

# assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # remove the conversation from the memory manager memory_manager.remove_conversation(Memory(conversation_id="1")) # assert that the memory manager is empty assert len(memory_manager.conversations) == 0 def test_adding_messages_to_conversation(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # add a message to the conversation memory_manager.add_message(conversation_id="1", human="Hello", assistant="Hello. How are you?") # get messages for that conversation messages = memory_manager.get_messages(conversation_id="1", query="Hello") # assert that the message was added assert len(messages) == 1 # assert that the message is correct assert messages[0].text == "Human: Hello\nAssistant: Hello. How are you?" assert messages[0].conversation_id == "1"

tests/test_memory_manager.py

continuum-llms-acad-gpt-9513178

python

add_conversation(Memory(conversation_id="1"))

from acad_gpt.datastore.config import RedisDataStoreConfig from acad_gpt.datastore.redis import RedisDataStore from acad_gpt.environment import OPENAI_API_KEY, REDIS_HOST, REDIS_PASSWORD, REDIS_PORT from acad_gpt.llm_client.openai.embedding.config import EmbeddingConfig from acad_gpt.llm_client.openai.embedding.embedding_client import EmbeddingClient from acad_gpt.memory.manager import MemoryManager from acad_gpt.memory.memory import Memory class TestMemoryManager: def setup(self): # create a redis datastore redis_datastore_config = RedisDataStoreConfig( host=REDIS_HOST, port=REDIS_PORT, password=REDIS_PASSWORD, ) self.datastore = RedisDataStore(redis_datastore_config, do_flush_data=True) # create an openai embedding client embedding_client_config = EmbeddingConfig(api_key=OPENAI_API_KEY) self.embedding_client = EmbeddingClient(embedding_client_config) def test_conversation_insertion_and_deletion(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # assert that the memory manager is initially empty assert len(memory_manager.

conversations) == 0

# add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # remove the conversation from the memory manager memory_manager.remove_conversation(Memory(conversation_id="1")) # assert that the memory manager is empty assert len(memory_manager.conversations) == 0 def test_adding_messages_to_conversation(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # add a message to the conversation memory_manager.add_message(conversation_id="1", human="Hello", assistant="Hello. How are you?") # get messages for that conversation messages = memory_manager.get_messages(conversation_id="1", query="Hello") # assert that the message was added assert len(messages) == 1 # assert that the message is correct assert messages[0].text == "Human: Hello\nAssistant: Hello. How are you?" assert messages[0].conversation_id == "1"

tests/test_memory_manager.py

continuum-llms-acad-gpt-9513178

python

conversations) == 0

from acad_gpt.datastore.config import RedisDataStoreConfig from acad_gpt.datastore.redis import RedisDataStore from acad_gpt.environment import OPENAI_API_KEY, REDIS_HOST, REDIS_PASSWORD, REDIS_PORT from acad_gpt.llm_client.openai.embedding.config import EmbeddingConfig from acad_gpt.llm_client.openai.embedding.embedding_client import EmbeddingClient from acad_gpt.memory.manager import MemoryManager from acad_gpt.memory.memory import Memory class TestMemoryManager: def setup(self): # create a redis datastore redis_datastore_config = RedisDataStoreConfig( host=REDIS_HOST, port=REDIS_PORT, password=REDIS_PASSWORD, ) self.datastore = RedisDataStore(redis_datastore_config, do_flush_data=True) # create an openai embedding client embedding_client_config = EmbeddingConfig(api_key=OPENAI_API_KEY) self.embedding_client = EmbeddingClient(embedding_client_config) def test_conversation_insertion_and_deletion(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # assert that the memory manager is initially empty assert len(memory_manager.conversations) == 0 # add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # remove the conversation from the memory manager memory_manager.remove_conversation(Memory(conversation_id="1")) # assert that the memory manager is empty assert len(memory_manager.conversations) == 0 def test_adding_messages_to_conversation(self): # create a memory manager memory_manager = MemoryManager(datastore=self.datastore, embed_client=self.embedding_client) # add a conversation to the memory manager memory_manager.add_conversation(Memory(conversation_id="1")) # assert that the memory manager has 1 conversation assert len(memory_manager.conversations) == 1 # add a message to the conversation memory_manager.

add_message(conversation_id="1", human="Hello", assistant="Hello. How are you?")

# get messages for that conversation messages = memory_manager.get_messages(conversation_id="1", query="Hello") # assert that the message was added assert len(messages) == 1 # assert that the message is correct assert messages[0].text == "Human: Hello\nAssistant: Hello. How are you?" assert messages[0].conversation_id == "1"

tests/test_memory_manager.py

continuum-llms-acad-gpt-9513178

python

add_message(conversation_id="1", human="Hello", assistant="Hello. How are you?")

from tritondse import ProbeInterface, SymbolicExecutor, Config, Program, SymbolicExplorator, ProcessState, CbType, SeedStatus, Seed from tritondse.types import Addr, SolverStatus, Architecture from tritondse.sanitizers import NullDerefSanitizer from triton import Instruction import logging buffers_len_g = dict() # buffer_address : buffer_len class StrncpySanitizer(ProbeInterface): # TODO handle strncpy into buff + offset # TODO handle symbolic n def __init__(self): super(StrncpySanitizer, self).__init__() self._add_callback(CbType.PRE_RTN, self.strncpy_check, 'strncpy') def strncpy_check(self, se: SymbolicExecutor, pstate: ProcessState, rtn_name: str, addr: Addr): buffer_addr = se.pstate.get_argument_value(0) if buffer_addr not in buffers_len_g: return buffer_len = buffers_len_g[buffer_addr] n = se.pstate.get_argument_value(2) n_sym = se.pstate.get_argument_symbolic(2) if n > buffer_len: logging.critical(f"Found overflowing strncpy buf: {hex(buffer_addr)} bufsize: {buffer_len} copysize: {n}") # Generate input to trigger the overflow s = pstate.get_argument_value(1) ast = pstate.actx def rec(res, s, deep, maxdeep): if deep == maxdeep: return res cell = pstate.read_symbolic_memory_byte(s+deep).getAst() res = ast.ite(cell == 0x00, ast.bv(deep, 64), rec(res, s, deep + 1, maxdeep)) return res sze = len(pstate.memory.read_string(s)) res = ast.bv(sze, 64) res = rec(res, s, 0, sze) pstate.push_constraint(pstate.read_symbolic_memory_byte(s+sze).getAst() == 0x00) # Manual state coverage of strlen(s) exp = res > n print("a") status, model = pstate.solve(exp) while status == SolverStatus.SAT: print("b") sze = pstate.evaluate_expression_model(res, model) new_seed = se.mk_new_seed_from_model(model) #print(f"new_seed: {new_seed.content} len = {hex(sze)}") se.enqueue_seed(new_seed) var_values = pstate.get_expression_variable_values_model(res, model) exp = pstate.actx.land([exp, res != sze]) status, model = pstate.solve(exp) return if n_sym.isSymbolized(): const = n_sym > buffer_len st, model = pstate.solve(const) if st == SolverStatus.SAT: new_seed = se.mk_new_seed_from_model(model) new_seed.status = SeedStatus.CRASH se.enqueue_seed(new_seed) def trace_inst(exec: SymbolicExecutor, pstate: ProcessState, inst: Instruction): print(f"[tid:{inst.getThreadId()}] 0x{inst.getAddress():x}: {inst.getDisassembly()}") def post_exec_hook(se: SymbolicExecutor, state: ProcessState): print(f"seed:{se.seed.hash} ({repr(se.seed.content)}) [exitcode:{se.exitcode}]") def hook_alert_placeholder(exec: SymbolicExecutor, pstate: ProcessState, addr: int): buffer_len = pstate.get_argument_value(2) buffer_addr = pstate.get_argument_value(3) buffers_len_g[buffer_addr] = buffer_len p = Program("./5") alert_placeholder_addr = p.find_function_addr("__alert_placeholder") dse = SymbolicExplorator(Config(skip_unsupported_import=True), p) #dse.add_input_seed(Seed(b"AZERAZAZERA")) dse.

add_input_seed(Seed(b"AZER"))

dse.callback_manager.register_probe(NullDerefSanitizer()) dse.callback_manager.register_post_execution_callback(post_exec_hook) dse.callback_manager.register_pre_addr_callback(alert_placeholder_addr, hook_alert_placeholder) dse.callback_manager.register_probe(StrncpySanitizer()) dse.explore()

doc/practicals/solutions_toy_examples/solve5.py

quarkslab-tritondse-9805288

python

add_input_seed(Seed(b"AZER"))

from tritondse import ProbeInterface, SymbolicExecutor, Config, Program, SymbolicExplorator, ProcessState, CbType, SeedStatus, Seed, SeedFormat, CompositeData from tritondse.types import Addr, SolverStatus, Architecture from tritondse.sanitizers import NullDerefSanitizer from tritondse.routines import rtn_atoi def post_exec_hook(se: SymbolicExecutor, state: ProcessState): print(f"seed:{se.seed.hash} ({repr(se.seed.content)}) [exitcode:{se.exitcode}]") def hook_fread(exec: SymbolicExecutor, pstate: ProcessState, routine: str, addr: int): # We hook fread to symbolize what is being read arg = pstate.get_argument_value(0) sizeof = pstate.get_argument_value(2) exec.inject_symbolic_input(arg, exec.seed) print("Symbolizing {} bytes at {}".format(hex(sizeof), hex(arg))) s = pstate.memory.read_string(arg) print(f"fread: {s}") return 0 def hook_sscanf4(exec: SymbolicExecutor, pstate: ProcessState, routine: str, addr: int): # sscanf(buffer, "%d", &j) is treated as j = atoi(buffer) ast = pstate.actx addr_j = pstate.get_argument_value(2) arg = pstate.get_argument_value(0) int_str = pstate.memory.read_string(arg) cells = {i: pstate.read_symbolic_memory_byte(arg+i).getAst() for i in range(10)} def multiply(ast, cells, index): n = ast.bv(0, 32) for i in range(index): n = n * 10 + (ast.zx(24, cells[i]) - 0x30) return n res = ast.ite( ast.lnot(ast.land([cells[0] >= 0x30, cells[0] <= 0x39])), multiply(ast, cells, 0), ast.ite( ast.lnot(ast.land([cells[1] >= 0x30, cells[1] <= 0x39])), multiply(ast, cells, 1), ast.ite( ast.lnot(ast.land([cells[2] >= 0x30, cells[2] <= 0x39])), multiply(ast, cells, 2), ast.ite( ast.lnot(ast.land([cells[3] >= 0x30, cells[3] <= 0x39])), multiply(ast, cells, 3), ast.ite( ast.lnot(ast.land([cells[4] >= 0x30, cells[4] <= 0x39])), multiply(ast, cells, 4), ast.ite( ast.lnot(ast.land([cells[5] >= 0x30, cells[5] <= 0x39])), multiply(ast, cells, 5), ast.ite( ast.lnot(ast.land([cells[6] >= 0x30, cells[6] <= 0x39])), multiply(ast, cells, 6), ast.ite( ast.lnot(ast.land([cells[7] >= 0x30, cells[7] <= 0x39])), multiply(ast, cells, 7), ast.ite( ast.lnot(ast.land([cells[8] >= 0x30, cells[8] <= 0x39])), multiply(ast, cells, 8), ast.ite( ast.lnot(ast.land([cells[9] >= 0x30, cells[9] <= 0x39])), multiply(ast, cells, 9), multiply(ast, cells, 9) ) ) ) ) ) ) ) ) ) ) res = ast.sx(32, res) pstate.write_symbolic_memory_int(addr_j, 8, res) try: i = int(int_str) constraint = res == i pstate.push_constraint(constraint) except: print("Failed to convert to int") return res p = Program("./1") dse = SymbolicExplorator(Config(\ skip_unsupported_import=True,\ seed_format=SeedFormat.COMPOSITE), p) dse.

add_input_seed(Seed(CompositeData(files={"stdin": b"AZERZAER", "tmp.covpro": b"AZERAEZR"})))

dse.callback_manager.register_post_execution_callback(post_exec_hook) dse.callback_manager.register_probe(NullDerefSanitizer()) #dse.callback_manager.register_post_imported_routine_callback("fread", hook_fread) dse.callback_manager.register_pre_imported_routine_callback("__isoc99_sscanf", hook_sscanf4) dse.explore()

doc/practicals/solutions_toy_examples/solve1.py

quarkslab-tritondse-9805288

python

add_input_seed(Seed(CompositeData(files={"stdin": b"AZERZAER", "tmp.covpro": b"AZERAEZR"})))

from tritondse import ProbeInterface, SymbolicExecutor, Config, Program, SymbolicExplorator, ProcessState, CbType, SeedStatus, Seed, SeedFormat, CompositeData from tritondse.types import Addr, SolverStatus, Architecture from tritondse.sanitizers import NullDerefSanitizer from triton import Instruction once_flag = False def trace_inst(exec: SymbolicExecutor, pstate: ProcessState, inst: Instruction): print(f"[tid:{inst.getThreadId()}] 0x{inst.getAddress():x}: {inst.getDisassembly()}") def post_exec_hook(se: SymbolicExecutor, state: ProcessState): print(f"seed:{se.seed.hash} ({repr(se.seed.content)}) [exitcode:{se.exitcode}]") def hook_strlen(se: SymbolicExecutor, pstate: ProcessState, routine: str, addr: int): global once_flag if once_flag: return # Get arguments s = pstate.get_argument_value(0) ast = pstate.actx def rec(res, s, deep, maxdeep): if deep == maxdeep: return res cell = pstate.read_symbolic_memory_byte(s+deep).getAst() res = ast.ite(cell == 0x00, ast.bv(deep, 64), rec(res, s, deep + 1, maxdeep)) return res sze = 20 res = ast.bv(sze, 64) res = rec(res, s, 0, sze) pstate.push_constraint(pstate.read_symbolic_memory_byte(s+sze).getAst() == 0x00) # Manual state coverage of strlen(s) exp = res != sze status, model = pstate.solve(exp) while status == SolverStatus.SAT: sze = pstate.evaluate_expression_model(res, model) new_seed = se.mk_new_seed_from_model(model) print(f"new_seed : {new_seed.content}") se.enqueue_seed(new_seed) var_values = pstate.get_expression_variable_values_model(res, model) exp = pstate.actx.land([exp, res != sze]) status, model = pstate.solve(exp) once_flag = True return res p = Program("./4") dse = SymbolicExplorator(Config(skip_unsupported_import=True,\ seed_format=SeedFormat.COMPOSITE), p) dse.

add_input_seed(Seed(CompositeData(argv=[b"./4", b"AAAAAA"])))

dse.callback_manager.register_probe(NullDerefSanitizer()) dse.callback_manager.register_post_execution_callback(post_exec_hook) dse.callback_manager.register_pre_imported_routine_callback("strlen", hook_strlen) #dse.callback_manager.register_post_instruction_callback(trace_inst) dse.explore()

doc/practicals/solutions_toy_examples/solve4.py

quarkslab-tritondse-9805288

python

add_input_seed(Seed(CompositeData(argv=[b"./4", b"AAAAAA"])))

from . import query class Page: @staticmethod def from_raw(raw): return Page(raw["data"], raw.get("before"), raw.get("after")) def __init__(self, data, before=None, after=None): self.data = data self.before = before self.after = after def map_data(self, func): return Page([func(x) for x in self.data], self.before, self.after) def __repr__(self): return "Page(data=%s, before=%s, after=%s)" % ( self.data, self.before, self.after, ) def __eq__(self, other): return ( isinstance(other, Page) and self.data == other.data and self.before == other.before and self.after == other.after ) @staticmethod def set_iterator(client, set_query, map_lambda=None, mapper=None, page_size=None): def get_page(**kwargs): queried = query.

paginate(set_query, **kwargs)

if map_lambda is not None: queried = query.map_(map_lambda, queried) return Page.from_raw(client.query(queried)) page = get_page(size=page_size) for val in page.data: yield val if mapper is None else mapper(val) next_cursor = "after" if page.after is not None else "before" while getattr(page, next_cursor) is not None: page = get_page( **{"size": page_size, next_cursor: getattr(page, next_cursor)} ) for val in page.data: yield val if mapper is None else mapper(val)

aiofauna/faunadb/page.py

obahamonde-aiofauna-67993d2

python

paginate(set_query, **kwargs)

from tritondse import ProbeInterface, SymbolicExecutor, Config, Program, SymbolicExplorator, ProcessState, CbType, SeedStatus, Seed from tritondse.types import Addr, SolverStatus, Architecture from tritondse.sanitizers import NullDerefSanitizer from triton import Instruction import logging buffers_len_g = dict() # buffer_address : buffer_len class StrncpySanitizer(ProbeInterface): # TODO handle strncpy into buff + offset def __init__(self): super(StrncpySanitizer, self).__init__() self._add_callback(CbType.PRE_RTN, self.strncpy_check, 'strncpy') def strncpy_check(self, se: SymbolicExecutor, pstate: ProcessState, rtn_name: str, addr: Addr): buffer_addr = se.pstate.get_argument_value(0) if buffer_addr not in buffers_len_g: return buffer_len = buffers_len_g[buffer_addr] n = se.pstate.get_argument_value(2) n_sym = se.pstate.get_argument_symbolic(2) if n > buffer_len: logging.critical(f"Found overflowing strncpy buf: {hex(buffer_addr)} bufsize: {buffer_len} copysize: {n}") # Generate input to trigger the overflow s = pstate.get_argument_value(1) ast = pstate.actx def rec(res, s, deep, maxdeep): if deep == maxdeep: return res cell = pstate.read_symbolic_memory_byte(s+deep).getAst() res = ast.ite(cell == 0x00, ast.bv(deep, 64), rec(res, s, deep + 1, maxdeep)) return res sze = len(pstate.memory.read_string(s)) res = ast.bv(sze, 64) res = rec(res, s, 0, sze) pstate.push_constraint(pstate.read_symbolic_memory_byte(s+sze).getAst() == 0x00) # Manual state coverage of strlen(s) exp = res > n status, model = pstate.solve(exp) while status == SolverStatus.SAT: sze = pstate.evaluate_expression_model(res, model) new_seed = se.mk_new_seed_from_model(model) #print(f"new_seed: {new_seed.content} len = {hex(sze)}") se.enqueue_seed(new_seed) var_values = pstate.get_expression_variable_values_model(res, model) exp = pstate.actx.land([exp, res != sze]) status, model = pstate.solve(exp) return # If n is symbolic, we try to make if bigger than buffer_len if n_sym.isSymbolized(): const = n_sym.getAst() > buffer_len st, model = pstate.solve(const) if st == SolverStatus.SAT: new_seed = se.mk_new_seed_from_model(model) #new_seed.status = SeedStatus.CRASH se.enqueue_seed(new_seed) def trace_inst(exec: SymbolicExecutor, pstate: ProcessState, inst: Instruction): print(f"[tid:{inst.getThreadId()}] 0x{inst.getAddress():x}: {inst.getDisassembly()}") def post_exec_hook(se: SymbolicExecutor, state: ProcessState): print(f"seed:{se.seed.hash} ({repr(se.seed.content)}) [exitcode:{se.exitcode}]") def hook_alert_placeholder(exec: SymbolicExecutor, pstate: ProcessState, addr: int): buffer_len = pstate.get_argument_value(2) buffer_addr = pstate.get_argument_value(3) buffers_len_g[buffer_addr] = buffer_len p = Program("./6") alert_placeholder_addr = p.find_function_addr("__alert_placeholder") dse = SymbolicExplorator(Config(symbolize_argv=True, skip_unsupported_import=True), p) dse.

add_input_seed(Seed(b"./6\x00AZERAZER\x00AZERAZER"))

dse.callback_manager.register_post_execution_callback(post_exec_hook) #dse.callback_manager.register_post_instruction_callback(trace_inst) dse.callback_manager.register_pre_addr_callback(alert_placeholder_addr, hook_alert_placeholder) dse.callback_manager.register_probe(StrncpySanitizer()) dse.callback_manager.register_probe(NullDerefSanitizer()) dse.explore()

doc/practicals/solutions_toy_examples/solve6.py

quarkslab-tritondse-9805288

python

add_input_seed(Seed(b"./6\x00AZERAZER\x00AZERAZER"))

from tritondse import ProbeInterface, SymbolicExecutor, Config, Program, SymbolicExplorator, ProcessState, CbType, SeedStatus, Seed, SeedFormat, CompositeData from tritondse.types import Addr, SolverStatus, Architecture from tritondse.sanitizers import NullDerefSanitizer from triton import Instruction once_flag_write = False once_flag_read = False def post_exec_hook(se: SymbolicExecutor, state: ProcessState): print(f"seed:{se.seed.hash} ({repr(se.seed.content)}) [exitcode:{se.exitcode}]") def memory_read_callback(se: SymbolicExecutor, pstate: ProcessState, addr): global once_flag_read if once_flag_read: return read_address = addr.getAddress() inst_address = pstate.read_register(pstate.registers.rip) lea = addr.getLeaAst() if lea == None: return #print(f"inst: {hex(inst_address)} read: {hex(read_address)}") if inst_address == 0x1234: print(lea) rax_sym = pstate.read_symbolic_register(pstate.registers.rax) rax = pstate.read_register(pstate.registers.rax) rbp = pstate.read_register(pstate.registers.rbp) target = rbp + rax * 4 - 0x80 if not pstate.is_register_symbolic(pstate.registers.rax): print("rax not symbolic") return print(f"argv[1] = {se.seed.content} Target = {hex(target)}") exp = lea != target status, model = pstate.solve(exp) while status == SolverStatus.SAT: new_seed = se.mk_new_seed_from_model(model) se.enqueue_seed(new_seed) target = pstate.evaluate_expression_model(lea, model) var_values = pstate.get_expression_variable_values_model(rax_sym, model) for var, value in var_values.items(): print(f"{var}: {chr(value)} Target = {hex(target)}") exp = pstate.actx.land([exp, lea != target]) status, model = pstate.solve(exp) once_flag_read = True # 0010120f 89 54 85 80 MOV dword ptr [RBP + RAX*0x4 + -0x80],EDX def memory_write_callback(se: SymbolicExecutor, pstate: ProcessState, addr, value): global once_flag_write if once_flag_write: return read_address = addr.getAddress() inst_address = pstate.read_register(pstate.registers.rip) lea = addr.getLeaAst() if lea == None: return #print(f"inst: {hex(inst_address)} write {hex(value)} to {hex(read_address)}") if inst_address == 0x120f: rax_sym = pstate.read_symbolic_register(pstate.registers.rax) rax = pstate.read_register(pstate.registers.rax) rbp = pstate.read_register(pstate.registers.rbp) target = rbp + rax * 4 - 0x80 if not pstate.is_register_symbolic(pstate.registers.rax): print("rax not symbolic") return print(f"argv[1] = {se.seed.content} Target = {hex(target)}") exp = lea != target status, model = pstate.solve(exp) while status == SolverStatus.SAT: new_seed = se.mk_new_seed_from_model(model) se.enqueue_seed(new_seed) target = pstate.evaluate_expression_model(lea, model) var_values = pstate.get_expression_variable_values_model(rax_sym, model) for var, value in var_values.items(): print(f"{var}: {chr(value)} Target = {hex(target)}") exp = pstate.actx.land([exp, lea != target]) status, model = pstate.solve(exp) once_flag_write = True p = Program("./3") dse = SymbolicExplorator(Config(\ skip_unsupported_import=True,\ seed_format=SeedFormat.COMPOSITE), p) dse.

add_input_seed(Seed(CompositeData(files={"stdin": b"AZERAZER"})))

dse.callback_manager.register_probe(NullDerefSanitizer()) dse.callback_manager.register_post_execution_callback(post_exec_hook) dse.callback_manager.register_memory_read_callback(memory_read_callback) dse.callback_manager.register_memory_write_callback(memory_write_callback) dse.explore()

doc/practicals/solutions_toy_examples/solve3.py

quarkslab-tritondse-9805288

python

add_input_seed(Seed(CompositeData(files={"stdin": b"AZERAZER"})))

import functools from typing import Optional from aiohttp.web import HTTPException, Request, Response, StreamResponse from jinja2 import Environment, FileSystemLoader, select_autoescape from jinja2.exceptions import ( TemplateAssertionError, TemplateError, TemplateNotFound, TemplateSyntaxError, UndefinedError, ) from markdown_it import MarkdownIt from markdown_it.renderer import RendererHTML from markdown_it.rules_block import StateBlock from pygments import highlight from pygments.formatters import HtmlFormatter from pygments.lexers import MarkdownLexer, get_lexer_by_name from ..utils import setup_logging EXCEPTIONS = ( TemplateAssertionError, TemplateError, TemplateNotFound, TemplateSyntaxError, UndefinedError, Exception, ) logger = setup_logging(__name__) def handle_template(func): @functools.wraps(func) async def wrapper(*args, **kwargs): try: return await func(*args, **kwargs) except EXCEPTIONS as e: logger.

error(e)

raise HTTPException(reason=str(e)) from e return wrapper class HighlightRenderer(RendererHTML): def code_block(self, tokens, idx, options, env): token = tokens[idx] lexer = get_lexer_by_name(token.info.strip() if token.info else "text") formatter = HtmlFormatter() return highlight(token.content, lexer, formatter) def highlight_code(code, name, attrs): """Highlight a block of code""" lexer = get_lexer_by_name(name) formatter = HtmlFormatter() return highlight(code, lexer, formatter) class ServerSideRenderer(StreamResponse): def __init__( self, headers={"Content-Type": "text/html"}, *args, **kwargs, ) -> None: super().__init__(*args, headers=headers, **kwargs) self.env = Environment( loader=FileSystemLoader("templates"), autoescape=select_autoescape(["html", "xml", "jinja2", "md"]), enable_async=True, ) self.md = MarkdownIt( "js-default", options_update={ "html": True, "linkify": True, "typographer": True, "highlight": highlight_code, }, ) @handle_template async def render_markdown(self, template_name: str, request: Request, **context): await self.prepare(request) template = self.env.get_template(template_name) response = self.md.render(await template.render_async(**context)) for chunk in response: await self.write(chunk.encode()) await self.write_eof() return self @handle_template async def stream_markdown(self, template_name: str, request: Request, **context): await self.prepare(request) template = self.env.get_template(template_name) async for chunk in template.generate_async(**context): await self.write(self.md.render(chunk).encode()) await self.write_eof() return self @handle_template async def render_template(self, template_name: str, request: Request, **context): await self.prepare(request) template = self.env.get_template(template_name) response = await template.render_async(**context) for chunk in response: await self.write(chunk.encode()) await self.write_eof() return self @handle_template async def stream_template(self, template_name: str, request: Request, **context): await self.prepare(request) template = self.env.get_template(template_name) async for chunk in template.generate_async(**context): await self.write(chunk.encode()) await self.write_eof() return self @handle_template async def markdown_string(self, string: str, request: Request): await self.prepare(request) response = self.md.render(string) for chunk in response: await self.write(chunk.encode()) await self.write_eof() return self @handle_template async def stream_markdown_string(self, string: str, request: Request): await self.prepare(request) for chunk in string: await self.write(self.md.render(chunk).encode()) await self.write_eof() return self @handle_template async def render_html(self, string: str, request: Request): await self.prepare(request) for chunk in string: await self.write(chunk.encode()) await self.write_eof() return self

aiofauna/ssr/ssr.py

obahamonde-aiofauna-67993d2

python

error(e)

import logging ''' Loggers hierarchy is the following: - tritondse. - ''' logger = logging.getLogger('tritondse') logger.propagate = False # Do not propagate logs by default color_enabled = True _loggers = {} def get(name: str = "") -> logging.Logger: """ Get a child logger from the tritondse one. If name is empty returns the root tritondse logger. :param name: logger name """ log = logger.getChild(name) if name else logger if log.name not in _loggers: log.propagate = False # first time it is retrieve disable propagation _loggers[log.name] = log return log def enable(level: int = logging.

INFO, name: str = "") -> None:

""" Enable tritondse logging to terminal output :param level: logging level :param name: name of the logger to enable (all by default) """ log = get(name) log.propagate = True log.setLevel(level) # Enable root logger if needed if log.name != "tritondse": logger.propagate = True else: for sub_logger in _loggers.values(): sub_logger.propagate = True def enable_to_file(level: int, file: str, name: str = "") -> None: """ Enable tritondse logging to a file :param level: logging level :param file: path to log file :param name: name of the logger to enable to a file """ log = get(name) log.setLevel(level) fmt = logging.Formatter("%(asctime)s %(threadName)s [%(levelname)s] %(message)s") handler = logging.FileHandler(file) handler.setFormatter(fmt) log.addHandler(handler) # Add the handler to the logger

tritondse/logging.py

quarkslab-tritondse-9805288

python

INFO, name: str = "") -> None:

from . import query class Page: @staticmethod def from_raw(raw): return Page(raw["data"], raw.get("before"), raw.get("after")) def __init__(self, data, before=None, after=None): self.data = data self.before = before self.after = after def map_data(self, func): return Page([func(x) for x in self.data], self.before, self.after) def __repr__(self): return "Page(data=%s, before=%s, after=%s)" % ( self.data, self.before, self.after, ) def __eq__(self, other): return ( isinstance(other, Page) and self.data == other.data and self.before == other.before and self.after == other.after ) @staticmethod def set_iterator(client, set_query, map_lambda=None, mapper=None, page_size=None): def get_page(**kwargs): queried = query.paginate(set_query, **kwargs) if map_lambda is not None: queried = query.

map_(map_lambda, queried)

return Page.from_raw(client.query(queried)) page = get_page(size=page_size) for val in page.data: yield val if mapper is None else mapper(val) next_cursor = "after" if page.after is not None else "before" while getattr(page, next_cursor) is not None: page = get_page( **{"size": page_size, next_cursor: getattr(page, next_cursor)} ) for val in page.data: yield val if mapper is None else mapper(val)

aiofauna/faunadb/page.py

obahamonde-aiofauna-67993d2

python

map_(map_lambda, queried)

import logging ''' Loggers hierarchy is the following: - tritondse. - ''' logger = logging.getLogger('tritondse') logger.propagate = False # Do not propagate logs by default color_enabled = True _loggers = {} def get(name: str = "") -> logging.Logger: """ Get a child logger from the tritondse one. If name is empty returns the root tritondse logger. :param name: logger name """ log = logger.getChild(name) if name else logger if log.name not in _loggers: log.propagate = False # first time it is retrieve disable propagation _loggers[log.name] = log return log def enable(level: int = logging.INFO, name: str = "") -> None: """ Enable tritondse logging to terminal output :param level: logging level :param name: name of the logger to enable (all by default) """ log = get(name) log.propagate = True log.setLevel(level) # Enable root logger if needed if log.name != "tritondse": logger.propagate = True else: for sub_logger in _loggers.values(): sub_logger.propagate = True def enable_to_file(level: int, file: str, name: str = "") -> None: """ Enable tritondse logging to a file :param level: logging level :param file: path to log file :param name: name of the logger to enable to a file """ log = get(name) log.setLevel(level) fmt = logging.

Formatter("%(asctime)s %(threadName)s [%(levelname)s] %(message)s")

handler = logging.FileHandler(file) handler.setFormatter(fmt) log.addHandler(handler) # Add the handler to the logger

tritondse/logging.py

quarkslab-tritondse-9805288

python

Formatter("%(asctime)s %(threadName)s [%(levelname)s] %(message)s")

"""Chat Completions Schemas""" from typing import List, Literal, NamedTuple, Union import numpy as np from ..odm import FaunaModel Vector = Union[np.ndarray, List[float]] Role = Literal["assistant", "user", "system", "function"] Model = Literal["gpt-4-0613", "gpt-3.5-turbo-16k-0613"] class Message(NamedTuple): """Defines a message within a conversation.""" role: Role content: str class ChatCompletionRequest(NamedTuple): """Defines a request for a chat completion.""" model: Model messages: List[Message] temperature: float max_tokens: int stream: bool class ChatCompletionUssage(NamedTuple): """Defines the usage of the tokens for a chat completion.""" prompt_tokens: int completion_tokens: int total_tokens: int class ChatCompletionChoice(NamedTuple): """Defines a choice in a chat completion.""" index: int message: Message finish_reason: str class ChatCompletionResponse(NamedTuple): """Defines a response for a chat completion.""" id: str object: str created: int model: Model choices: List[ChatCompletionChoice] usage: ChatCompletionUssage stream: bool class VectorResponse(NamedTuple): text: str score: float class Embedding(FaunaModel): """Defines an embedding.""" vector: Vector namespace: str text: str async def similarity_search( self, vector: Vector, namespace: str, limit: int = 1000, k: int = 10 ) -> List[VectorResponse]: """ Searches for similar embeddings. Args: vector: The vector to search for. namespace: The namespace to search in. limit: The maximum number of results to return. k: The number of results to return per query. Returns: A list of VectorResponse. """ results = await self.

find_many(limit=limit, namespace=namespace)

similarities = [ VectorResponse(text=result.text, score=result.similarity(vector)) for result in results ] return sorted(similarities, key=lambda x: x.score, reverse=True)[:k] def similarity(self, vector: Vector): return (np.dot(self.vector, vector)) / ( (np.linalg.norm(self.vector) * np.linalg.norm(vector)) )

aiofauna/llm/schemas.py

obahamonde-aiofauna-67993d2

python

find_many(limit=limit, namespace=namespace)