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wanglab
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ppd_promoter

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metadata
configs:
  - config_name: Bacillus_subtilis_subsp._subtilis_str._168_256
    data_files:
      - path: Bacillus_subtilis_subsp._subtilis_str._168_256/*arrow
        split: train
  - config_name: Bacillus_subtilis_subsp._subtilis_str._168_512
    data_files:
      - path: Bacillus_subtilis_subsp._subtilis_str._168_512/*arrow
        split: train
  - config_name: Bacillus_subtilis_subsp._subtilis_str._168_1024
    data_files:
      - path: Bacillus_subtilis_subsp._subtilis_str._168_1024/*arrow
        split: train
  - config_name: Bacillus_subtilis_subsp._subtilis_str._168_2048
    data_files:
      - path: Bacillus_subtilis_subsp._subtilis_str._168_2048/*arrow
        split: train
  - config_name: Bacillus_subtilis_subsp._subtilis_str._168_4096
    data_files:
      - path: Bacillus_subtilis_subsp._subtilis_str._168_4096/*arrow
        split: train
  - config_name: Bacillus_subtilis_subsp._subtilis_str._168_8192
    data_files:
      - path: Bacillus_subtilis_subsp._subtilis_str._168_8192/*arrow
        split: train
  - config_name: Acinetobacter_baumannii_ATCC_17978_256
    data_files:
      - path: Acinetobacter_baumannii_ATCC_17978_256/*arrow
        split: train
  - config_name: Acinetobacter_baumannii_ATCC_17978_512
    data_files:
      - path: Acinetobacter_baumannii_ATCC_17978_512/*arrow
        split: train
  - config_name: Acinetobacter_baumannii_ATCC_17978_1024
    data_files:
      - path: Acinetobacter_baumannii_ATCC_17978_1024/*arrow
        split: train
  - config_name: Acinetobacter_baumannii_ATCC_17978_2048
    data_files:
      - path: Acinetobacter_baumannii_ATCC_17978_2048/*arrow
        split: train
  - config_name: Acinetobacter_baumannii_ATCC_17978_4096
    data_files:
      - path: Acinetobacter_baumannii_ATCC_17978_4096/*arrow
        split: train
  - config_name: Acinetobacter_baumannii_ATCC_17978_8192
    data_files:
      - path: Acinetobacter_baumannii_ATCC_17978_8192/*arrow
        split: train

Dataset Organization

The PPD Promoter dataset is organized by species and context length. Each species has multiple subsets corresponding to different context lengths.

Instructions to download

You can load a dataset using HF's API, with an example below.

from datasets import load_dataset

bacillus_data = load_dataset("wanglab/ppd_promoter", 'Bacillus_subtilis_subsp._subtilis_str._168_256')

# access the train data for a specific context length
bacillus_256_data = bacillus_data['train']