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wzkariampuzha
/
EpiExtract4GARD

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The dataset generation failed because of a cast error
Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 1 new columns ({'Most'}) and 1 missing columns ({'Background'}).

This happened while the csv dataset builder was generating data using

hf://datasets/wzkariampuzha/EpiExtract4GARD/val.tsv (at revision e5fc49d2b3bf3085f0d654902e1d19f1b1afdda7)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2011, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 585, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2302, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2256, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              Most: string
              O: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 473
              to
              {'Background': Value(dtype='string', id=None), 'O': Value(dtype='string', id=None)}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1321, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 935, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1027, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1122, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1882, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 2013, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 1 new columns ({'Most'}) and 1 missing columns ({'Background'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/wzkariampuzha/EpiExtract4GARD/val.tsv (at revision e5fc49d2b3bf3085f0d654902e1d19f1b1afdda7)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)

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Background
string
O
string
Chemotherapy
O
-
O
induced
O
cardiomyopathy
O
(
O
CICM
O
)
O
and
O
heart
O
failure
O
are
O
major
O
complications
O
of
O
cancer
O
therapeutics
O
and
O
can
O
result
O
in
O
significant
O
morbidity
O
and
O
mortality
O
.
O
There
O
is
O
limited
O
data
O
on
O
the
O
incidence
B-EPI
and
O
risk
O
factors
O
of
O
CICM
O
in
O
African
O
American
O
and
O
Afro
O
-
O
Caribbean
O
patients
O
.
O
Methods
O
We
O
performed
O
a
O
retrospective
O
chart
O
review
O
to
O
evaluate
O
the
O
baseline
O
characteristics
O
that
O
may
O
predispose
O
to
O
CICM
O
.
O
Patients
O
were
O
African
O
American
O
and
O
Afro
O
-
O
Caribbean
O
ethnicity
O
.
O
Data
O
was
O
collected
O
between
O
2014
O
to
O
2018
O
.
O
Patients
O
had
O
transthoracic
O
echocardiogram
O
(
O
TTE
O
)
O
or
O
multigated
O
acquisition
O
scan
O
(
O
MUGA
O
)
O
prior
O
to
O
cancer
O
therapy
O
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