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metadata
inference:
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    do_sample: true
    max_length: 512
    top_p: 0.9
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language:
  - en
license: mit
metrics:
  - sacrebleu
  - bert_score
  - rouge
  - meteor
  - sari
  - ari
  - Automated Readability Index
tags:
  - text2text generation
task:
  name: scientific abstract simplification
  type: text2text generation
widget:
  - text: >-
      summarize, simplify, and contextualize: The COVID-19 pandemic presented
      enormous data challenges in the United States. Policy makers,
      epidemiological modelers, and health researchers all require up-to-date
      data on the pandemic and relevant public behavior, ideally at fine spatial
      and temporal resolution. The COVIDcast API is our attempt to fill this
      need: Operational since April 2020, it provides open access to both
      traditional public health surveillance signals (cases, deaths, and
      hospitalizations) and many auxiliary indicators of COVID-19 activity, such
      as signals extracted from deidentified medical claims data, massive online
      surveys, cell phone mobility data, and internet search trends. These are
      available at a fine geographic resolution (mostly at the county level) and
      are updated daily. The COVIDcast API also tracks all revisions to
      historical data, allowing modelers to account for the frequent revisions
      and backfill that are common for many public health data sources. All of
      the data are available in a common format through the API and accompanying
      R and Python software packages. This paper describes the data sources and
      signals, and provides examples demonstrating that the auxiliary signals in
      the COVIDcast API present information relevant to tracking COVID activity,
      augmenting traditional public health reporting and empowering research and
      decision-making.
    example_title: covid-api paper, from PNAS
  - text: >-
      summarize, simplify, and contextualize: Potato mop-top virus (PMTV) is
      considered an emerging threat to potato production in the United States.
      PMTV is transmitted by a soil-borne protist, Spongospora subterranean.
      Rapid, accurate, and sensitive detection of PMTV in leaves and tubers is
      an essential component in PMTV management program. A rapid test that can
      be adapted to in-field, on-site testing with minimal sample manipulation
      could help in ensuring the sanitary status of the produce in situations
      such as certification programs and shipping point inspections. Toward that
      goal, a rapid and highly sensitive recombinase polymerase amplification
      (RPA)-based test was developed for PMTV detection in potato tubers. The
      test combines the convenience of RPA assay with a simple sample extraction
      procedure, making it amenable to rapid on-site diagnosis of PMTV.
      Furthermore, the assay was duplexed with a plant internal control to
      monitor sample extraction and RPA reaction performance. The method
      described could detect as little as 10 fg of PMTV RNA transcript in
      various potato tissues, the diagnostic limit of detection (LOQ) similar to
      that of traditional molecular methods.
    example_title: potato paper, from PLOS ONE
  - text: >-
      summarize, simplify, and contextualize: One of the most thrilling cultural
      experiences is to hear live symphony-orchestra music build up from a
      whispering passage to a monumental fortissimo. The impact of such a
      crescendo has been thought to depend only on the musicians’ skill, but
      here we show that interactions between the concert-hall acoustics and
      listeners’ hearing also play a major role in musical dynamics. These
      interactions contribute to the shoebox-type concert hall’s established
      success, but little prior research has been devoted to dynamic expression
      in this three-part transmission chain as a complete system. More forceful
      orchestral playing disproportionately excites high frequency harmonics
      more than those near the note’s fundamental. This effect results in not
      only more sound energy, but also a different tone color. The concert hall
      transmits this sound, and the room geometry defines from which directions
      acoustic reflections arrive at the listener. Binaural directional hearing
      emphasizes high frequencies more when sound arrives from the sides of the
      head rather than from the median plane. Simultaneously, these same
      frequencies are emphasized by higher orchestral-playing dynamics. When the
      room geometry provides reflections from these directions, the perceived
      dynamic range is enhanced. Current room-acoustic evaluation methods assume
      linear behavior and thus neglect this effect. The hypothesis presented
      here is that the auditory excitation by reflections is emphasized with an
      orchestra forte most in concert halls with strong lateral reflections. The
      enhanced dynamic range provides an explanation for the success of
      rectangularly shaped concert-hall geometry.
    example_title: music paper, from PNAS
  - text: >-
      summarize, simplify, and contextualize: Children in industrialized
      cultures typically succeed on Give-N, a test of counting ability, by age
      4. On the other hand, counting appears to be learned much later in the
      Tsimane’, an indigenous group in the Bolivian Amazon. This study tests
      three hypotheses for what may cause this difference in timing: (a)
      Tsimane’ children may be shy in providing behavioral responses to number
      tasks, (b) Tsimane’ children may not memorize the verbal list of number
      words early in acquisition, and/or (c) home environments may not support
      mathematical learning in the same way as in US samples, leading Tsimane’
      children to primarily acquire mathematics through formalized schooling.
      Our results suggest that most of our subjects are not inhibited by shyness
      in responding to experimental tasks. We also find that Tsimane’ children
      (N = 100, ages 4-11) learn the verbal list later than US children, but
      even upon acquiring this list, still take time to pass Give-N tasks. We
      find that performance in counting varies across tasks and is related to
      formal schooling. These results highlight the importance of formal
      education, including instruction in the count list, in learning the
      meanings of the number words.
    example_title: given-n paper, from PLOS ONE