| name ambient_long | |
| seed 100 | |
| numPairTransformLayers 8 | |
| warmupEpoches 2 | |
| numEpoches 20 | |
| motifProbability 1.0 | |
| logEverySteps 1000 | |
| checkpointEveryEpoches 1 | |
| batchSize 1 | |
| accumGrad 4 | |
| learningRate 1e-5 | |
| ambient True | |
| t_nature 300 | |
| plddt_to_timestep ((90,-50),(80,300),(70,900)) | |
| dt_buffer 50 | |
| dataDirectory /scratch/projects/cgai/ambient_proteins/cluster/datasets/1300K/plddt70/afdb/repr/cluster_alntype1_tm50_alncov75_021425_021425_cluster | |
| always_ambient_for_high_noises True | |
| minimumNumResidues 20 | |
| maximumNumResidues 768 | |
| min_plddt 70 | |
| resume runs/ambient_long_phase2/version_0/checkpoints/epoch=49.ckpt | |