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"""Functions for generating line graphs.""" |
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from collections import defaultdict |
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from functools import partial |
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from itertools import combinations |
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import networkx as nx |
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from networkx.utils import arbitrary_element |
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from networkx.utils.decorators import not_implemented_for |
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__all__ = ["line_graph", "inverse_line_graph"] |
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@nx._dispatchable(returns_graph=True) |
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def line_graph(G, create_using=None): |
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r"""Returns the line graph of the graph or digraph `G`. |
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The line graph of a graph `G` has a node for each edge in `G` and an |
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edge joining those nodes if the two edges in `G` share a common node. For |
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directed graphs, nodes are adjacent exactly when the edges they represent |
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form a directed path of length two. |
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The nodes of the line graph are 2-tuples of nodes in the original graph (or |
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3-tuples for multigraphs, with the key of the edge as the third element). |
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For information about self-loops and more discussion, see the **Notes** |
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section below. |
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Parameters |
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---------- |
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G : graph |
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A NetworkX Graph, DiGraph, MultiGraph, or MultiDigraph. |
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create_using : NetworkX graph constructor, optional (default=nx.Graph) |
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Graph type to create. If graph instance, then cleared before populated. |
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Returns |
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------- |
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L : graph |
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The line graph of G. |
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Examples |
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-------- |
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>>> G = nx.star_graph(3) |
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>>> L = nx.line_graph(G) |
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>>> print(sorted(map(sorted, L.edges()))) # makes a 3-clique, K3 |
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[[(0, 1), (0, 2)], [(0, 1), (0, 3)], [(0, 2), (0, 3)]] |
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Edge attributes from `G` are not copied over as node attributes in `L`, but |
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attributes can be copied manually: |
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>>> G = nx.path_graph(4) |
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>>> G.add_edges_from((u, v, {"tot": u + v}) for u, v in G.edges) |
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>>> G.edges(data=True) |
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EdgeDataView([(0, 1, {'tot': 1}), (1, 2, {'tot': 3}), (2, 3, {'tot': 5})]) |
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>>> H = nx.line_graph(G) |
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>>> H.add_nodes_from((node, G.edges[node]) for node in H) |
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>>> H.nodes(data=True) |
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NodeDataView({(0, 1): {'tot': 1}, (2, 3): {'tot': 5}, (1, 2): {'tot': 3}}) |
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Notes |
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----- |
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Graph, node, and edge data are not propagated to the new graph. For |
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undirected graphs, the nodes in G must be sortable, otherwise the |
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constructed line graph may not be correct. |
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*Self-loops in undirected graphs* |
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For an undirected graph `G` without multiple edges, each edge can be |
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written as a set `\{u, v\}`. Its line graph `L` has the edges of `G` as |
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its nodes. If `x` and `y` are two nodes in `L`, then `\{x, y\}` is an edge |
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in `L` if and only if the intersection of `x` and `y` is nonempty. Thus, |
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the set of all edges is determined by the set of all pairwise intersections |
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of edges in `G`. |
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Trivially, every edge in G would have a nonzero intersection with itself, |
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and so every node in `L` should have a self-loop. This is not so |
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interesting, and the original context of line graphs was with simple |
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graphs, which had no self-loops or multiple edges. The line graph was also |
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meant to be a simple graph and thus, self-loops in `L` are not part of the |
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standard definition of a line graph. In a pairwise intersection matrix, |
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this is analogous to excluding the diagonal entries from the line graph |
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definition. |
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Self-loops and multiple edges in `G` add nodes to `L` in a natural way, and |
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do not require any fundamental changes to the definition. It might be |
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argued that the self-loops we excluded before should now be included. |
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However, the self-loops are still "trivial" in some sense and thus, are |
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usually excluded. |
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*Self-loops in directed graphs* |
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For a directed graph `G` without multiple edges, each edge can be written |
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as a tuple `(u, v)`. Its line graph `L` has the edges of `G` as its |
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nodes. If `x` and `y` are two nodes in `L`, then `(x, y)` is an edge in `L` |
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if and only if the tail of `x` matches the head of `y`, for example, if `x |
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= (a, b)` and `y = (b, c)` for some vertices `a`, `b`, and `c` in `G`. |
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Due to the directed nature of the edges, it is no longer the case that |
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every edge in `G` should have a self-loop in `L`. Now, the only time |
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self-loops arise is if a node in `G` itself has a self-loop. So such |
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self-loops are no longer "trivial" but instead, represent essential |
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features of the topology of `G`. For this reason, the historical |
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development of line digraphs is such that self-loops are included. When the |
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graph `G` has multiple edges, once again only superficial changes are |
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required to the definition. |
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References |
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---------- |
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* Harary, Frank, and Norman, Robert Z., "Some properties of line digraphs", |
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Rend. Circ. Mat. Palermo, II. Ser. 9 (1960), 161--168. |
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* Hemminger, R. L.; Beineke, L. W. (1978), "Line graphs and line digraphs", |
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in Beineke, L. W.; Wilson, R. J., Selected Topics in Graph Theory, |
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Academic Press Inc., pp. 271--305. |
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""" |
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if G.is_directed(): |
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L = _lg_directed(G, create_using=create_using) |
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else: |
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L = _lg_undirected(G, selfloops=False, create_using=create_using) |
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return L |
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def _lg_directed(G, create_using=None): |
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"""Returns the line graph L of the (multi)digraph G. |
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Edges in G appear as nodes in L, represented as tuples of the form (u,v) |
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or (u,v,key) if G is a multidigraph. A node in L corresponding to the edge |
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(u,v) is connected to every node corresponding to an edge (v,w). |
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Parameters |
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---------- |
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G : digraph |
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A directed graph or directed multigraph. |
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create_using : NetworkX graph constructor, optional |
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Graph type to create. If graph instance, then cleared before populated. |
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Default is to use the same graph class as `G`. |
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""" |
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L = nx.empty_graph(0, create_using, default=G.__class__) |
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get_edges = partial(G.edges, keys=True) if G.is_multigraph() else G.edges |
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for from_node in get_edges(): |
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L.add_node(from_node) |
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for to_node in get_edges(from_node[1]): |
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L.add_edge(from_node, to_node) |
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return L |
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def _lg_undirected(G, selfloops=False, create_using=None): |
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"""Returns the line graph L of the (multi)graph G. |
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Edges in G appear as nodes in L, represented as sorted tuples of the form |
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(u,v), or (u,v,key) if G is a multigraph. A node in L corresponding to |
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the edge {u,v} is connected to every node corresponding to an edge that |
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involves u or v. |
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Parameters |
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---------- |
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G : graph |
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An undirected graph or multigraph. |
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selfloops : bool |
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If `True`, then self-loops are included in the line graph. If `False`, |
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they are excluded. |
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create_using : NetworkX graph constructor, optional (default=nx.Graph) |
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Graph type to create. If graph instance, then cleared before populated. |
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Notes |
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----- |
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The standard algorithm for line graphs of undirected graphs does not |
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produce self-loops. |
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""" |
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L = nx.empty_graph(0, create_using, default=G.__class__) |
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get_edges = partial(G.edges, keys=True) if G.is_multigraph() else G.edges |
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shift = 0 if selfloops else 1 |
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node_index = {n: i for i, n in enumerate(G)} |
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edge_key_function = lambda edge: (node_index[edge[0]], node_index[edge[1]]) |
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edges = set() |
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for u in G: |
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nodes = [tuple(sorted(x[:2], key=node_index.get)) + x[2:] for x in get_edges(u)] |
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if len(nodes) == 1: |
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L.add_node(nodes[0]) |
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for i, a in enumerate(nodes): |
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edges.update( |
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[ |
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tuple(sorted((a, b), key=edge_key_function)) |
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for b in nodes[i + shift :] |
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] |
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) |
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L.add_edges_from(edges) |
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return L |
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@not_implemented_for("directed") |
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@not_implemented_for("multigraph") |
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@nx._dispatchable(returns_graph=True) |
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def inverse_line_graph(G): |
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"""Returns the inverse line graph of graph G. |
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If H is a graph, and G is the line graph of H, such that G = L(H). |
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Then H is the inverse line graph of G. |
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Not all graphs are line graphs and these do not have an inverse line graph. |
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In these cases this function raises a NetworkXError. |
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Parameters |
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---------- |
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G : graph |
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A NetworkX Graph |
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Returns |
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------- |
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H : graph |
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The inverse line graph of G. |
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Raises |
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------ |
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NetworkXNotImplemented |
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If G is directed or a multigraph |
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NetworkXError |
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If G is not a line graph |
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Notes |
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----- |
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This is an implementation of the Roussopoulos algorithm[1]_. |
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If G consists of multiple components, then the algorithm doesn't work. |
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You should invert every component separately: |
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>>> K5 = nx.complete_graph(5) |
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>>> P4 = nx.Graph([("a", "b"), ("b", "c"), ("c", "d")]) |
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>>> G = nx.union(K5, P4) |
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>>> root_graphs = [] |
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>>> for comp in nx.connected_components(G): |
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... root_graphs.append(nx.inverse_line_graph(G.subgraph(comp))) |
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>>> len(root_graphs) |
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2 |
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References |
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---------- |
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.. [1] Roussopoulos, N.D. , "A max {m, n} algorithm for determining the graph H from |
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its line graph G", Information Processing Letters 2, (1973), 108--112, ISSN 0020-0190, |
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`DOI link <https://doi.org/10.1016/0020-0190(73)90029-X>`_ |
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""" |
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if G.number_of_nodes() == 0: |
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return nx.empty_graph(1) |
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elif G.number_of_nodes() == 1: |
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v = arbitrary_element(G) |
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a = (v, 0) |
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b = (v, 1) |
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H = nx.Graph([(a, b)]) |
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return H |
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elif G.number_of_nodes() > 1 and G.number_of_edges() == 0: |
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msg = ( |
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"inverse_line_graph() doesn't work on an edgeless graph. " |
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"Please use this function on each component separately." |
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) |
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raise nx.NetworkXError(msg) |
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if nx.number_of_selfloops(G) != 0: |
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msg = ( |
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"A line graph as generated by NetworkX has no selfloops, so G has no " |
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"inverse line graph. Please remove the selfloops from G and try again." |
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) |
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raise nx.NetworkXError(msg) |
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starting_cell = _select_starting_cell(G) |
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P = _find_partition(G, starting_cell) |
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P_count = {u: 0 for u in G.nodes} |
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for p in P: |
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for u in p: |
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P_count[u] += 1 |
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if max(P_count.values()) > 2: |
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msg = "G is not a line graph (vertex found in more than two partition cells)" |
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raise nx.NetworkXError(msg) |
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W = tuple((u,) for u in P_count if P_count[u] == 1) |
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H = nx.Graph() |
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H.add_nodes_from(P) |
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H.add_nodes_from(W) |
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for a, b in combinations(H.nodes, 2): |
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if any(a_bit in b for a_bit in a): |
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H.add_edge(a, b) |
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return H |
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def _triangles(G, e): |
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"""Return list of all triangles containing edge e""" |
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u, v = e |
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if u not in G: |
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raise nx.NetworkXError(f"Vertex {u} not in graph") |
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if v not in G[u]: |
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raise nx.NetworkXError(f"Edge ({u}, {v}) not in graph") |
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triangle_list = [] |
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for x in G[u]: |
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if x in G[v]: |
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triangle_list.append((u, v, x)) |
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return triangle_list |
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def _odd_triangle(G, T): |
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"""Test whether T is an odd triangle in G |
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Parameters |
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---------- |
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G : NetworkX Graph |
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T : 3-tuple of vertices forming triangle in G |
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Returns |
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------- |
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True is T is an odd triangle |
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False otherwise |
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Raises |
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------ |
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NetworkXError |
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T is not a triangle in G |
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Notes |
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----- |
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An odd triangle is one in which there exists another vertex in G which is |
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adjacent to either exactly one or exactly all three of the vertices in the |
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triangle. |
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""" |
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for u in T: |
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if u not in G.nodes(): |
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raise nx.NetworkXError(f"Vertex {u} not in graph") |
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for e in list(combinations(T, 2)): |
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if e[0] not in G[e[1]]: |
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raise nx.NetworkXError(f"Edge ({e[0]}, {e[1]}) not in graph") |
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T_nbrs = defaultdict(int) |
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for t in T: |
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for v in G[t]: |
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if v not in T: |
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T_nbrs[v] += 1 |
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return any(T_nbrs[v] in [1, 3] for v in T_nbrs) |
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def _find_partition(G, starting_cell): |
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"""Find a partition of the vertices of G into cells of complete graphs |
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Parameters |
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---------- |
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G : NetworkX Graph |
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starting_cell : tuple of vertices in G which form a cell |
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Returns |
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------- |
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List of tuples of vertices of G |
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Raises |
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------ |
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NetworkXError |
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If a cell is not a complete subgraph then G is not a line graph |
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""" |
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G_partition = G.copy() |
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P = [starting_cell] |
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G_partition.remove_edges_from(list(combinations(starting_cell, 2))) |
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partitioned_vertices = list(starting_cell) |
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while G_partition.number_of_edges() > 0: |
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u = partitioned_vertices.pop() |
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deg_u = len(G_partition[u]) |
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if deg_u != 0: |
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new_cell = [u] + list(G_partition[u]) |
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for u in new_cell: |
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for v in new_cell: |
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if (u != v) and (v not in G_partition[u]): |
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msg = ( |
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"G is not a line graph " |
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"(partition cell not a complete subgraph)" |
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) |
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raise nx.NetworkXError(msg) |
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P.append(tuple(new_cell)) |
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G_partition.remove_edges_from(list(combinations(new_cell, 2))) |
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partitioned_vertices += new_cell |
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return P |
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def _select_starting_cell(G, starting_edge=None): |
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"""Select a cell to initiate _find_partition |
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Parameters |
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---------- |
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G : NetworkX Graph |
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starting_edge: an edge to build the starting cell from |
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Returns |
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------- |
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Tuple of vertices in G |
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Raises |
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------ |
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NetworkXError |
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If it is determined that G is not a line graph |
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Notes |
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----- |
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If starting edge not specified then pick an arbitrary edge - doesn't |
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matter which. However, this function may call itself requiring a |
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specific starting edge. Note that the r, s notation for counting |
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triangles is the same as in the Roussopoulos paper cited above. |
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""" |
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if starting_edge is None: |
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e = arbitrary_element(G.edges()) |
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else: |
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e = starting_edge |
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if e[0] not in G.nodes(): |
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raise nx.NetworkXError(f"Vertex {e[0]} not in graph") |
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if e[1] not in G[e[0]]: |
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msg = f"starting_edge ({e[0]}, {e[1]}) is not in the Graph" |
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raise nx.NetworkXError(msg) |
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e_triangles = _triangles(G, e) |
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r = len(e_triangles) |
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if r == 0: |
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starting_cell = e |
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elif r == 1: |
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T = e_triangles[0] |
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a, b, c = T |
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ac_edges = len(_triangles(G, (a, c))) |
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bc_edges = len(_triangles(G, (b, c))) |
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if ac_edges == 1: |
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if bc_edges == 1: |
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starting_cell = T |
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else: |
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return _select_starting_cell(G, starting_edge=(b, c)) |
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else: |
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return _select_starting_cell(G, starting_edge=(a, c)) |
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else: |
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s = 0 |
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odd_triangles = [] |
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for T in e_triangles: |
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if _odd_triangle(G, T): |
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s += 1 |
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odd_triangles.append(T) |
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if r == 2 and s == 0: |
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starting_cell = T |
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elif r - 1 <= s <= r: |
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triangle_nodes = set() |
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for T in odd_triangles: |
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for x in T: |
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triangle_nodes.add(x) |
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for u in triangle_nodes: |
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for v in triangle_nodes: |
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if u != v and (v not in G[u]): |
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msg = ( |
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"G is not a line graph (odd triangles " |
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"do not form complete subgraph)" |
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) |
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raise nx.NetworkXError(msg) |
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starting_cell = tuple(triangle_nodes) |
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else: |
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msg = ( |
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"G is not a line graph (incorrect number of " |
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"odd triangles around starting edge)" |
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) |
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raise nx.NetworkXError(msg) |
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return starting_cell |
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