BioM3 / weights /README.md
Niksa Praljak
instructinos for installing LLMs pretrained weights
72a56de

Weights Directory

This folder contains the pre-trained weights for the BioM3 project models. The weights are stored as .bin files for different components of the BioM3 pipeline:

  1. LLMs: Pre-trained weights for compiling PenCL model.
  2. PenCL: Pre-trained weights for the PenCL model (Stage 1).
  3. Facilitator: Pre-trained weights for the Facilitator model (Stage 2).
  4. ProteoScribe: Pre-trained weights for the ProteoScribe model (Stage 3).

Purpose

The weights provided here enable users to quickly load and run inference with the pre-trained models for text-protein sequence alignment, functional annotation, and other tasks.

Each subfolder includes:

  • Instructions for downloading the desired .bin files.
  • Information on integrating the weights into your workflows.

Prerequisites

To download pre-trained weights, you must install gdown:

pip install gdown