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Browse files- .gitattributes +2 -0
- OnClass.data-00000-of-00001 +3 -0
- OnClass.index +0 -0
- OnClass.meta +3 -0
- OnClass.npz +3 -0
- accuracies.json +4 -0
- celltypist.pkl +3 -0
- checkpoint +2 -0
- harmony_knn_classifier.joblib +3 -0
- obo_dag.joblib +3 -0
- popv_output/predictions.csv +0 -0
- preprocessing.json +0 -0
- pynndescent_index.joblib +3 -0
- scanvi/model.pt +3 -0
- scvi/model.pt +3 -0
- scvi_knn_classifier.joblib +3 -0
- svm_classifier_cuml.joblib +3 -0
- xgboost_classifier.model +3 -0
.gitattributes
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"query_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 3687 | 0.86 | 0.90 | 0.86 | 0.86 | 0.00 | 0.89 | 0.75 | 0.78 | 0.91 |\n| mesenchymal stem cell | 1678 | 0.87 | 0.88 | 0.89 | 0.68 | 0.00 | 0.69 | 0.91 | 0.87 | 0.93 |\n| basal cell of epidermis | 1499 | 0.85 | 0.88 | 0.81 | 0.84 | 0.00 | 0.84 | 0.86 | 0.82 | 0.90 |\n| granulocyte | 1556 | 0.81 | 0.86 | 0.79 | 0.74 | 0.00 | 0.78 | 0.74 | 0.80 | 0.88 |\n| endothelial cell | 1478 | 0.88 | 0.88 | 0.82 | 0.74 | 0.00 | 0.79 | 0.90 | 0.85 | 0.93 |\n| microglial cell | 1293 | 0.99 | 0.99 | 0.96 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 1.00 |\n| T cell | 1244 | 0.75 | 0.80 | 0.63 | 0.58 | 0.00 | 0.67 | 0.62 | 0.73 | 0.82 |\n| keratinocyte | 1254 | 0.85 | 0.89 | 0.81 | 0.80 | 0.00 | 0.86 | 0.88 | 0.85 | 0.91 |\n| macrophage | 971 | 0.47 | 0.68 | 0.59 | 0.51 | 0.00 | 0.48 | 0.53 | 0.56 | 0.71 |\n| classical monocyte | 765 | 0.75 | 0.60 | 0.61 | 0.56 | 0.00 | 0.78 | 0.79 | 0.83 | 0.88 |\n| granulocytopoietic cell | 807 | 0.67 | 0.77 | 0.62 | 0.51 | 0.00 | 0.46 | 0.68 | 0.75 | 0.80 |\n| bladder urothelial cell | 680 | 0.98 | 0.99 | 0.96 | 0.85 | 0.00 | 0.96 | 1.00 | 0.98 | 0.99 |\n| mesenchymal stem cell of adipose tissue | 650 | 0.74 | 0.84 | 0.72 | 0.51 | 0.00 | 0.54 | 0.90 | 0.80 | 0.88 |\n| fibroblast of cardiac tissue | 613 | 0.96 | 0.94 | 0.80 | 0.46 | 0.00 | 0.66 | 0.95 | 0.91 | 0.96 |\n| endothelial cell of coronary artery | 624 | 0.81 | 0.86 | 0.63 | 0.58 | 0.00 | 0.77 | 0.89 | 0.84 | 0.91 |\n| skeletal muscle satellite cell | 465 | 0.98 | 0.98 | 0.95 | 0.97 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| proerythroblast | 435 | 0.52 | 0.56 | 0.51 | 0.22 | 0.00 | 0.26 | 0.51 | 0.60 | 0.64 |\n| kidney proximal convoluted tubule epithelial cell | 445 | 0.84 | 0.87 | 0.34 | 0.82 | 0.00 | 0.75 | 0.87 | 0.88 | 0.89 |\n| bronchial smooth muscle cell | 454 | 0.96 | 0.96 | 0.84 | 0.91 | 0.00 | 0.92 | 0.97 | 0.94 | 0.96 |\n| myeloid cell | 413 | 0.44 | 0.60 | 0.41 | 0.42 | 0.00 | 0.25 | 0.70 | 0.68 | 0.69 |\n| hepatocyte | 377 | 0.98 | 0.98 | 0.98 | 0.97 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| type B pancreatic cell | 428 | 0.97 | 0.98 | 0.96 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| bladder cell | 411 | 0.97 | 0.95 | 0.97 | 0.58 | 0.00 | 0.84 | 0.98 | 0.96 | 0.98 |\n| promonocyte | 365 | 0.65 | 0.72 | 0.66 | 0.61 | 0.00 | 0.58 | 0.74 | 0.78 | 0.82 |\n| DN4 thymocyte | 425 | 0.39 | 0.53 | 0.38 | 0.31 | 0.00 | 0.23 | 0.58 | 0.63 | 0.62 |\n| basal cell | 384 | 0.98 | 0.97 | 0.97 | 0.92 | 0.00 | 0.96 | 0.98 | 0.96 | 0.98 |\n| monocyte | 350 | 0.60 | 0.57 | 0.48 | 0.31 | 0.00 | 0.37 | 0.73 | 0.76 | 0.84 |\n| enterocyte of epithelium of large intestine | 374 | 0.92 | 0.93 | 0.84 | 0.92 | 0.00 | 0.92 | 0.94 | 0.92 | 0.95 |\n| thymocyte | 370 | 0.82 | 0.74 | 0.59 | 0.82 | 0.00 | 0.87 | 0.89 | 0.92 | 0.88 |\n| epithelial cell of proximal tubule | 342 | 0.84 | 0.82 | 0.78 | 0.76 | 0.00 | 0.82 | 0.85 | 0.85 | 0.85 |\n| natural killer cell | 352 | 0.84 | 0.82 | 0.68 | 0.68 | 0.00 | 0.74 | 0.74 | 0.80 | 0.85 |\n| naive B cell | 341 | 0.46 | 0.22 | 0.40 | 0.36 | 0.00 | 0.48 | 0.49 | 0.56 | 0.58 |\n| hematopoietic stem cell | 337 | 0.92 | 0.93 | 0.88 | 0.88 | 0.00 | 0.88 | 0.94 | 0.93 | 0.94 |\n| mature NK T cell | 321 | 0.57 | 0.64 | 0.46 | 0.32 | 0.00 | 0.59 | 0.59 | 0.70 | 0.71 |\n| fibroblast | 309 | 0.20 | 0.25 | 0.53 | 0.31 | 0.00 | 0.32 | 0.56 | 0.54 | 0.52 |\n| stromal cell | 331 | 0.61 | 0.49 | 0.86 | 0.33 | 0.00 | 0.37 | 0.85 | 0.71 | 0.86 |\n| keratinocyte stem cell | 321 | 0.95 | 0.95 | 0.84 | 0.87 | 0.00 | 0.93 | 0.96 | 0.91 | 0.96 |\n| erythroblast | 291 | 0.60 | 0.69 | 0.66 | 0.56 | 0.00 | 0.54 | 0.66 | 0.71 | 0.76 |\n| Kupffer cell | 280 | 0.98 | 0.95 | 0.71 | 0.42 | 0.00 | 0.83 | 0.98 | 0.94 | 0.97 |\n| megakaryocyte-erythroid progenitor cell | 244 | 0.53 | 0.62 | 0.45 | 0.41 | 0.00 | 0.57 | 0.55 | 0.66 | 0.69 |\n| pancreatic acinar cell | 235 | 0.95 | 0.95 | 0.93 | 0.97 | 0.00 | 0.98 | 0.99 | 0.99 | 0.98 |\n| luminal epithelial cell of mammary gland | 300 | 0.94 | 0.94 | 0.98 | 0.87 | 0.00 | 0.92 | 0.97 | 0.93 | 0.97 |\n| professional antigen presenting cell | 257 | 0.05 | 0.02 | 0.09 | 0.01 | 0.00 | 0.01 | 0.41 | 0.36 | 0.06 |\n| epidermal cell | 219 | 0.84 | 0.85 | 0.75 | 0.84 | 0.00 | 0.84 | 0.86 | 0.86 | 0.90 |\n| hematopoietic precursor cell | 216 | 0.63 | 0.74 | 0.39 | 0.24 | 0.00 | 0.55 | 0.71 | 0.78 | 0.80 |\n| oligodendrocyte | 224 | 0.96 | 0.98 | 0.97 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| fibroblast of lung | 216 | 0.98 | 0.96 | 0.94 | 0.90 | 0.00 | 0.95 | 0.98 | 0.94 | 0.99 |\n| CD8-positive, alpha-beta T cell | 183 | 0.35 | 0.52 | 0.28 | 0.32 | 0.00 | 0.44 | 0.48 | 0.57 | 0.64 |\n| epithelial cell of large intestine | 174 | 0.74 | 0.79 | 0.57 | 0.68 | 0.00 | 0.73 | 0.85 | 0.82 | 0.83 |\n| intestinal crypt stem cell | 199 | 0.84 | 0.86 | 0.69 | 0.80 | 0.00 | 0.82 | 0.87 | 0.82 | 0.87 |\n| chondrocyte | 179 | 0.60 | 0.61 | 0.78 | 0.68 | 0.00 | 0.64 | 0.85 | 0.85 | 0.69 |\n| immature T cell | 181 | 0.72 | 0.03 | 0.12 | 0.61 | 0.00 | 0.79 | 0.82 | 0.88 | 0.77 |\n| precursor B cell | 192 | 0.66 | 0.88 | 0.55 | 0.62 | 0.00 | 0.66 | 0.78 | 0.84 | 0.84 |\n| intermediate monocyte | 167 | 0.34 | 0.12 | 0.36 | 0.24 | 0.00 | 0.63 | 0.53 | 0.58 | 0.64 |\n| large intestine goblet cell | 163 | 0.79 | 0.85 | 0.79 | 0.76 | 0.00 | 0.81 | 0.91 | 0.86 | 0.88 |\n| CD4-positive, alpha-beta T cell | 164 | 0.25 | 0.38 | 0.22 | 0.26 | 0.00 | 0.38 | 0.33 | 0.45 | 0.55 |\n| smooth muscle cell | 167 | 0.59 | 0.79 | 0.66 | 0.61 | 0.00 | 0.73 | 0.84 | 0.81 | 0.77 |\n| leukocyte | 156 | 0.52 | 0.59 | 0.35 | 0.18 | 0.00 | 0.32 | 0.62 | 0.68 | 0.77 |\n| plasma cell | 143 | 0.48 | 0.66 | 0.47 | 0.41 | 0.00 | 0.60 | 0.52 | 0.60 | 0.71 |\n| lymphocyte | 173 | 0.18 | 0.20 | 0.31 | 0.13 | 0.00 | 0.00 | 0.23 | 0.38 | 0.35 |\n| naive T cell | 146 | 0.79 | 0.85 | 0.85 | 0.82 | 0.00 | 0.84 | 0.86 | 0.86 | 0.87 |\n| kidney loop of Henle thick ascending limb epithelial cell | 141 | 0.92 | 0.91 | 0.66 | 0.79 | 0.00 | 0.42 | 0.89 | 0.92 | 0.94 |\n| immature B cell | 147 | 0.71 | 0.76 | 0.57 | 0.69 | 0.00 | 0.58 | 0.52 | 0.71 | 0.82 |\n| alveolar macrophage | 134 | 0.93 | 0.93 | 0.90 | 0.89 | 0.00 | 0.93 | 0.95 | 0.90 | 0.94 |\n| endothelial cell of hepatic sinusoid | 122 | 0.95 | 0.93 | 0.89 | 0.81 | 0.00 | 0.86 | 0.98 | 0.93 | 0.96 |\n| lung macrophage | 106 | 0.87 | 0.09 | 0.30 | 0.00 | 0.00 | 0.81 | 0.87 | 0.81 | 0.94 |\n| non-classical monocyte | 114 | 0.60 | 0.73 | 0.41 | 0.56 | 0.00 | 0.69 | 0.78 | 0.70 | 0.75 |\n| endocardial cell | 113 | 0.92 | 0.92 | 0.88 | 0.85 | 0.00 | 0.79 | 0.92 | 0.85 | 0.93 |\n| double negative thymocyte | 105 | 0.55 | 0.00 | 0.31 | 0.20 | 0.00 | 0.64 | 0.72 | 0.81 | 0.83 |\n| late pro-B cell | 92 | 0.80 | 0.82 | 0.37 | 0.54 | 0.00 | 0.59 | 0.68 | 0.80 | 0.90 |\n| kidney collecting duct principal cell | 105 | 0.64 | 0.86 | 0.78 | 0.86 | 0.00 | 0.84 | 0.91 | 0.85 | 0.89 |\n| basal epithelial cell of tracheobronchial tree | 87 | 0.89 | 0.77 | 0.83 | 0.49 | 0.00 | 0.57 | 0.93 | 0.86 | 0.93 |\n| mesenchymal cell | 91 | 0.20 | 0.00 | 0.14 | 0.11 | 0.00 | 0.12 | 0.45 | 0.49 | 0.42 |\n| pancreatic A cell | 81 | 0.61 | 0.77 | 0.44 | 0.83 | 0.00 | 0.80 | 0.91 | 0.89 | 0.86 |\n| adventitial cell | 63 | 0.69 | 0.62 | 0.45 | 0.07 | 0.00 | 0.23 | 0.76 | 0.54 | 0.81 |\n| epithelial cell | 52 | 0.38 | 0.07 | 0.46 | 0.38 | 0.00 | 0.27 | 0.51 | 0.49 | 0.62 |\n| kidney distal convoluted tubule epithelial cell | 80 | 0.76 | 0.86 | 0.62 | 0.63 | 0.00 | 0.86 | 0.87 | 0.86 | 0.87 |\n| neutrophil | 73 | 0.54 | 0.68 | 0.46 | 0.18 | 0.00 | 0.28 | 0.66 | 0.58 | 0.68 |\n| pancreatic ductal cell | 55 | 0.98 | 0.81 | 0.78 | 0.93 | 0.00 | 0.96 | 0.96 | 0.96 | 0.98 |\n| myeloid dendritic cell | 54 | 0.36 | 0.58 | 0.40 | 0.33 | 0.00 | 0.42 | 0.69 | 0.62 | 0.68 |\n| astrocyte | 70 | 0.93 | 0.95 | 0.98 | 0.98 | 0.00 | 0.99 | 0.99 | 0.96 | 0.99 |\n| secretory cell | 52 | 0.21 | 0.49 | 0.37 | 0.45 | 0.00 | 0.65 | 0.87 | 0.77 | 0.70 |\n| myeloid leukocyte | 56 | 0.69 | 0.41 | 0.42 | 0.27 | 0.00 | 0.31 | 0.44 | 0.57 | 0.80 |\n| plasmatocyte | 48 | 0.55 | 0.78 | 0.63 | 0.76 | 0.00 | 0.61 | 0.88 | 0.83 | 0.87 |\n| brain pericyte | 56 | 0.00 | 0.77 | 0.56 | 0.76 | 0.00 | 0.87 | 0.97 | 0.84 | 0.95 |\n| neuron | 48 | 0.59 | 0.62 | 0.66 | 0.65 | 0.00 | 0.72 | 0.90 | 0.81 | 0.87 |\n| vein endothelial cell | 49 | 0.67 | 0.81 | 0.64 | 0.26 | 0.00 | 0.74 | 0.86 | 0.72 | 0.85 |\n| kidney collecting duct epithelial cell | 49 | 0.00 | 0.63 | 0.20 | 0.56 | 0.00 | 0.39 | 0.78 | 0.85 | 0.91 |\n| pancreatic D cell | 46 | 0.00 | 0.76 | 0.52 | 0.89 | 0.00 | 0.95 | 0.96 | 0.96 | 0.97 |\n| aortic endothelial cell | 12 | 0.08 | 0.12 | 0.18 | 0.21 | 0.00 | 0.14 | 0.13 | 0.08 | 0.37 |\n| brush cell | 37 | 0.78 | 0.59 | 0.35 | 0.68 | 0.00 | 0.80 | 0.72 | 0.73 | 0.81 |\n| erythroid progenitor cell, mammalian | 48 | 0.57 | 0.00 | 0.18 | 0.05 | 0.00 | 0.26 | 0.79 | 0.65 | 0.49 |\n| regular atrial cardiac myocyte | 35 | 0.00 | 0.58 | 0.44 | 0.44 | 0.00 | 0.37 | 0.52 | 0.66 | 0.77 |\n| kidney cortex artery cell | 40 | 0.00 | 0.83 | 0.58 | 0.24 | 0.00 | 0.62 | 0.83 | 0.62 | 0.85 |\n| erythrocyte | 44 | 0.63 | 0.63 | 0.64 | 0.63 | 0.00 | 0.67 | 0.74 | 0.85 | 0.80 |\n| mesangial cell | 32 | 0.00 | 0.58 | 0.22 | 0.28 | 0.00 | 0.50 | 0.66 | 0.59 | 0.81 |\n| kidney loop of Henle ascending limb epithelial cell | 32 | 0.56 | 0.59 | 0.43 | 0.33 | 0.00 | 0.35 | 0.72 | 0.67 | 0.74 |\n| cardiac muscle cell | 32 | 0.63 | 0.81 | 0.62 | 0.71 | 0.00 | 0.94 | 1.00 | 0.97 | 0.97 |\n| mature alpha-beta T cell | 37 | 0.00 | 0.27 | 0.28 | 0.38 | 0.00 | 0.52 | 0.39 | 0.44 | 0.56 |\n| basophil | 33 | 0.64 | 0.61 | 0.59 | 0.47 | 0.00 | 0.38 | 0.54 | 0.62 | 0.73 |\n| cardiac valve cell | 22 | 0.45 | 0.71 | 0.51 | 0.56 | 0.00 | 0.58 | 0.83 | 0.78 | 0.72 |\n| oligodendrocyte precursor cell | 29 | 0.87 | 0.95 | 0.93 | 0.97 | 0.00 | 0.98 | 0.98 | 1.00 | 0.98 |\n| Schwann cell | 22 | 0.63 | 0.67 | 0.81 | 0.65 | 0.00 | 0.81 | 0.77 | 0.67 | 0.74 |\n| pulmonary interstitial fibroblast | 24 | 0.87 | 0.86 | 0.70 | 0.75 | 0.00 | 0.92 | 0.96 | 0.90 | 0.92 |\n| smooth muscle cell of trachea | 25 | 0.00 | 0.00 | 0.11 | 0.07 | 0.00 | 0.23 | 0.35 | 0.50 | 0.36 |\n| granulocyte monocyte progenitor cell | 28 | 0.60 | 0.71 | 0.56 | 0.69 | 0.00 | 0.47 | 0.85 | 0.77 | 0.85 |\n| interneuron | 25 | 0.00 | 0.53 | 0.28 | 0.65 | 0.00 | 0.86 | 0.94 | 0.78 | 0.94 |\n| pancreatic PP cell | 23 | 0.00 | 0.23 | 0.08 | 0.56 | 0.00 | 0.68 | 0.78 | 0.76 | 0.61 |\n| smooth muscle cell of the pulmonary artery | 26 | 0.00 | 0.68 | 0.56 | 0.21 | 0.00 | 0.33 | 0.88 | 0.70 | 0.73 |\n| cell of skeletal muscle | 16 | 0.94 | 0.94 | 0.78 | 0.97 | 0.00 | 0.94 | 0.91 | 0.94 | 0.94 |\n| Langerhans cell | 18 | 0.88 | 0.85 | 0.36 | 0.38 | 0.00 | 0.41 | 0.90 | 0.81 | 0.91 |\n| brush cell of epithelium proper of large intestine | 10 | 0.00 | 0.78 | 0.00 | 0.67 | 0.00 | 0.62 | 0.90 | 0.82 | 0.80 |\n| stem cell of epidermis | 11 | 0.00 | 0.00 | 0.50 | 0.12 | 0.00 | 0.36 | 0.56 | 0.53 | 0.62 |\n| regulatory T cell | 13 | 0.00 | 0.00 | 0.00 | 0.06 | 0.00 | 0.14 | 0.12 | 0.21 | 0.25 |\n| epithelial cell of thymus | 16 | 0.00 | 0.00 | 0.17 | 0.36 | 0.00 | 0.06 | 0.52 | 0.25 | 0.30 |\n| enteroendocrine cell | 8 | 0.67 | 0.60 | 0.33 | 0.59 | 0.00 | 0.67 | 0.89 | 0.78 | 0.74 |\n| kidney capillary endothelial cell | 19 | 0.17 | 0.54 | 0.30 | 0.18 | 0.00 | 0.30 | 0.26 | 0.27 | 0.27 |\n| neuroepithelial stem cell | 16 | 0.18 | 0.21 | 0.36 | 0.27 | 0.00 | 0.23 | 0.62 | 0.29 | 0.52 |\n| macrophage dendritic cell progenitor | 9 | 0.00 | 0.14 | 0.52 | 0.14 | 0.00 | 0.52 | 0.44 | 0.62 | 0.70 |\n| DN3 thymocyte | 16 | 0.00 | 0.00 | 0.00 | 0.43 | 0.00 | 0.79 | 0.82 | 0.73 | 0.52 |\n| regular ventricular cardiac myocyte | 9 | 0.00 | 0.00 | 0.78 | 0.48 | 0.00 | 0.53 | 0.84 | 1.00 | 0.89 |\n| endothelial cell of lymphatic vessel | 5 | 0.00 | 0.43 | 0.80 | 0.10 | 0.00 | 0.09 | 0.34 | 0.21 | 0.57 |\n| ciliated columnar cell of tracheobronchial tree | 16 | 0.72 | 0.80 | 0.85 | 0.80 | 0.00 | 0.59 | 0.88 | 0.75 | 0.88 |\n| plasmacytoid dendritic cell | 13 | 0.00 | 0.56 | 0.32 | 0.24 | 0.00 | 0.13 | 0.44 | 0.29 | 0.52 |\n| dendritic cell | 10 | 0.00 | 0.25 | 0.22 | 0.32 | 0.00 | 0.16 | 0.54 | 0.30 | 0.48 |\n| medium spiny neuron | 14 | 0.00 | 0.78 | 0.58 | 0.48 | 0.00 | 0.93 | 0.97 | 0.96 | 0.88 |\n| pericyte | 16 | 0.00 | 0.94 | 0.87 | 0.58 | 0.00 | 0.81 | 1.00 | 0.94 | 1.00 |\n| neural stem cell | 10 | 0.00 | 0.82 | 0.57 | 0.76 | 0.00 | 0.86 | 0.78 | 0.73 | 0.86 |\n| kidney proximal straight tubule epithelial cell | 8 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.19 | 0.00 |\n| blood cell | 9 | 0.20 | 0.00 | 0.36 | 0.00 | 0.00 | 0.00 | 0.21 | 0.18 | 0.32 |\n| immature NK T cell | 8 | 0.00 | 0.22 | 0.36 | 0.00 | 0.00 | 0.24 | 0.41 | 0.35 | 0.50 |\n| cardiac neuron | 10 | 0.00 | 0.31 | 0.29 | 0.12 | 0.00 | 0.32 | 0.74 | 0.77 | 0.62 |\n| mast cell | 12 | 0.00 | 0.00 | 0.15 | 0.29 | 0.00 | 0.11 | 0.54 | 0.56 | 0.56 |\n| mucus secreting cell | 8 | 0.00 | 0.62 | 0.88 | 0.50 | 0.00 | 0.48 | 0.78 | 0.89 | 0.94 |\n| early pro-B cell | 6 | 0.00 | 0.60 | 0.00 | 0.46 | 0.00 | 0.19 | 0.62 | 0.38 | 0.83 |\n| pancreatic stellate cell | 9 | 0.00 | 0.75 | 0.36 | 0.57 | 0.00 | 0.16 | 0.82 | 0.84 | 0.84 |\n| ependymal cell | 5 | 0.00 | 0.75 | 1.00 | 0.67 | 0.00 | 0.50 | 0.77 | 0.77 | 0.77 |\n| Bergmann glial cell | 4 | 0.00 | 0.40 | 0.57 | 0.67 | 0.00 | 0.67 | 1.00 | 0.89 | 1.00 |\n| neuroendocrine cell | 7 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.20 | 0.14 | 0.00 |\n| fibrocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| hepatic stellate cell | 5 | 0.00 | 0.00 | 0.60 | 0.77 | 0.00 | 0.56 | 0.91 | 0.83 | 1.00 |\n| club cell | 7 | 0.14 | 0.25 | 0.10 | 0.15 | 0.00 | 0.13 | 0.14 | 0.13 | 0.14 |\n| respiratory basal cell | 2 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 | 0.11 | 0.67 | 0.67 | 0.67 |\n| kidney interstitial fibroblast | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 0.00 |\n| lymphoid lineage restricted progenitor cell | 1 | 0.00 | 0.00 | 1.00 | 0.67 | 0.00 | 0.40 | 0.03 | 1.00 | 1.00 |\n| lung neuroendocrine cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| kidney cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| duct epithelial cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
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3 |
+
"ref_accuracy": "| Cell Type | N cells | celltypist | knn bbknn | knn harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| B cell | 32653 | 0.86 | 0.89 | 0.88 | 0.93 | 0.00 | 0.95 | 0.75 | 0.79 | 0.94 |\n| mesenchymal stem cell | 14461 | 0.86 | 0.86 | 0.96 | 0.87 | 0.00 | 0.86 | 0.92 | 0.87 | 0.95 |\n| basal cell of epidermis | 14140 | 0.85 | 0.87 | 0.91 | 0.91 | 0.00 | 0.85 | 0.87 | 0.83 | 0.92 |\n| granulocyte | 14006 | 0.80 | 0.84 | 0.90 | 0.91 | 0.00 | 0.87 | 0.74 | 0.81 | 0.91 |\n| endothelial cell | 13329 | 0.87 | 0.86 | 0.87 | 0.86 | 0.00 | 0.88 | 0.91 | 0.85 | 0.95 |\n| microglial cell | 11975 | 0.99 | 0.99 | 0.94 | 0.99 | 0.00 | 0.97 | 0.99 | 0.99 | 0.99 |\n| T cell | 11497 | 0.75 | 0.79 | 0.77 | 0.85 | 0.00 | 0.89 | 0.65 | 0.74 | 0.88 |\n| keratinocyte | 11101 | 0.85 | 0.88 | 0.91 | 0.91 | 0.00 | 0.88 | 0.89 | 0.86 | 0.92 |\n| macrophage | 8653 | 0.48 | 0.64 | 0.80 | 0.76 | 0.00 | 0.76 | 0.57 | 0.61 | 0.80 |\n| classical monocyte | 7359 | 0.76 | 0.55 | 0.80 | 0.88 | 0.00 | 0.90 | 0.81 | 0.84 | 0.92 |\n| granulocytopoietic cell | 7275 | 0.66 | 0.78 | 0.84 | 0.85 | 0.00 | 0.82 | 0.69 | 0.80 | 0.89 |\n| bladder urothelial cell | 5958 | 0.98 | 0.98 | 0.99 | 0.95 | 0.00 | 0.99 | 0.99 | 0.98 | 0.99 |\n| mesenchymal stem cell of adipose tissue | 5973 | 0.76 | 0.82 | 0.89 | 0.71 | 0.00 | 0.91 | 0.92 | 0.82 | 0.94 |\n| fibroblast of cardiac tissue | 5710 | 0.94 | 0.92 | 0.88 | 0.73 | 0.00 | 0.87 | 0.96 | 0.91 | 0.97 |\n| endothelial cell of coronary artery | 5363 | 0.80 | 0.83 | 0.79 | 0.78 | 0.00 | 0.91 | 0.90 | 0.84 | 0.96 |\n| skeletal muscle satellite cell | 4308 | 0.98 | 0.98 | 0.97 | 0.97 | 0.00 | 0.97 | 0.97 | 0.97 | 0.98 |\n| proerythroblast | 4242 | 0.51 | 0.52 | 0.72 | 0.75 | 0.00 | 0.77 | 0.57 | 0.66 | 0.74 |\n| kidney proximal convoluted tubule epithelial cell | 4015 | 0.83 | 0.83 | 0.91 | 0.89 | 0.00 | 0.90 | 0.90 | 0.89 | 0.92 |\n| bronchial smooth muscle cell | 4002 | 0.95 | 0.96 | 0.81 | 0.93 | 0.00 | 0.93 | 0.97 | 0.95 | 0.97 |\n| myeloid cell | 4007 | 0.44 | 0.57 | 0.73 | 0.68 | 0.00 | 0.84 | 0.74 | 0.72 | 0.85 |\n| hepatocyte | 3698 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.99 | 0.99 |\n| type B pancreatic cell | 3587 | 0.97 | 0.96 | 0.96 | 0.98 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| bladder cell | 3600 | 0.97 | 0.95 | 0.99 | 0.75 | 0.00 | 0.97 | 0.98 | 0.96 | 0.99 |\n| promonocyte | 3477 | 0.65 | 0.69 | 0.85 | 0.83 | 0.00 | 0.85 | 0.78 | 0.83 | 0.88 |\n| DN4 thymocyte | 3331 | 0.34 | 0.45 | 0.60 | 0.69 | 0.00 | 0.88 | 0.61 | 0.66 | 0.80 |\n| basal cell | 3342 | 0.98 | 0.97 | 0.98 | 0.94 | 0.00 | 0.96 | 0.98 | 0.97 | 0.99 |\n| monocyte | 3324 | 0.61 | 0.53 | 0.74 | 0.76 | 0.00 | 0.88 | 0.77 | 0.81 | 0.90 |\n| enterocyte of epithelium of large intestine | 3293 | 0.91 | 0.92 | 0.94 | 0.93 | 0.00 | 0.95 | 0.95 | 0.93 | 0.96 |\n| thymocyte | 3147 | 0.80 | 0.75 | 0.86 | 0.92 | 0.00 | 0.91 | 0.91 | 0.93 | 0.96 |\n| epithelial cell of proximal tubule | 3101 | 0.82 | 0.78 | 0.87 | 0.85 | 0.00 | 0.87 | 0.87 | 0.86 | 0.88 |\n| natural killer cell | 3009 | 0.82 | 0.81 | 0.74 | 0.83 | 0.00 | 0.86 | 0.80 | 0.84 | 0.88 |\n| naive B cell | 3016 | 0.44 | 0.19 | 0.81 | 0.66 | 0.00 | 0.79 | 0.52 | 0.56 | 0.84 |\n| hematopoietic stem cell | 3005 | 0.92 | 0.93 | 0.93 | 0.94 | 0.00 | 0.93 | 0.95 | 0.94 | 0.95 |\n| mature NK T cell | 2840 | 0.54 | 0.62 | 0.61 | 0.79 | 0.00 | 0.81 | 0.63 | 0.72 | 0.78 |\n| fibroblast | 2834 | 0.18 | 0.24 | 0.75 | 0.63 | 0.00 | 0.74 | 0.64 | 0.65 | 0.77 |\n| stromal cell | 2792 | 0.61 | 0.39 | 0.97 | 0.64 | 0.00 | 0.93 | 0.87 | 0.75 | 0.93 |\n| keratinocyte stem cell | 2736 | 0.92 | 0.92 | 0.93 | 0.92 | 0.00 | 0.94 | 0.95 | 0.90 | 0.96 |\n| erythroblast | 2627 | 0.59 | 0.68 | 0.82 | 0.85 | 0.00 | 0.86 | 0.69 | 0.75 | 0.85 |\n| Kupffer cell | 2526 | 0.97 | 0.94 | 0.87 | 0.91 | 0.00 | 0.96 | 0.98 | 0.97 | 0.99 |\n| megakaryocyte-erythroid progenitor cell | 2548 | 0.59 | 0.63 | 0.77 | 0.76 | 0.00 | 0.73 | 0.64 | 0.73 | 0.80 |\n| pancreatic acinar cell | 2472 | 0.96 | 0.95 | 0.94 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| luminal epithelial cell of mammary gland | 2371 | 0.92 | 0.91 | 0.98 | 0.93 | 0.00 | 0.97 | 0.97 | 0.95 | 0.98 |\n| professional antigen presenting cell | 2347 | 0.03 | 0.01 | 0.27 | 0.45 | 0.00 | 0.93 | 0.44 | 0.40 | 0.49 |\n| epidermal cell | 2008 | 0.87 | 0.87 | 0.90 | 0.90 | 0.00 | 0.88 | 0.88 | 0.87 | 0.92 |\n| hematopoietic precursor cell | 1928 | 0.62 | 0.71 | 0.62 | 0.79 | 0.00 | 0.91 | 0.74 | 0.81 | 0.90 |\n| oligodendrocyte | 1870 | 0.96 | 0.99 | 0.97 | 1.00 | 0.00 | 0.99 | 1.00 | 0.99 | 0.99 |\n| fibroblast of lung | 1790 | 0.96 | 0.95 | 0.93 | 0.93 | 0.00 | 0.97 | 0.98 | 0.97 | 0.98 |\n| CD8-positive, alpha-beta T cell | 1757 | 0.34 | 0.48 | 0.45 | 0.63 | 0.00 | 0.69 | 0.60 | 0.63 | 0.74 |\n| epithelial cell of large intestine | 1759 | 0.74 | 0.79 | 0.86 | 0.79 | 0.00 | 0.82 | 0.88 | 0.86 | 0.89 |\n| intestinal crypt stem cell | 1719 | 0.82 | 0.86 | 0.90 | 0.88 | 0.00 | 0.87 | 0.90 | 0.87 | 0.92 |\n| chondrocyte | 1726 | 0.61 | 0.62 | 0.85 | 0.83 | 0.00 | 0.82 | 0.88 | 0.88 | 0.82 |\n| immature T cell | 1603 | 0.66 | 0.00 | 0.82 | 0.91 | 0.00 | 0.92 | 0.89 | 0.89 | 0.96 |\n| precursor B cell | 1579 | 0.67 | 0.84 | 0.91 | 0.87 | 0.00 | 0.87 | 0.85 | 0.88 | 0.92 |\n| intermediate monocyte | 1594 | 0.35 | 0.07 | 0.52 | 0.67 | 0.00 | 0.68 | 0.57 | 0.62 | 0.74 |\n| large intestine goblet cell | 1582 | 0.81 | 0.84 | 0.92 | 0.85 | 0.00 | 0.91 | 0.95 | 0.92 | 0.95 |\n| CD4-positive, alpha-beta T cell | 1557 | 0.26 | 0.37 | 0.47 | 0.61 | 0.00 | 0.59 | 0.48 | 0.57 | 0.73 |\n| smooth muscle cell | 1536 | 0.61 | 0.76 | 0.83 | 0.86 | 0.00 | 0.89 | 0.90 | 0.83 | 0.84 |\n| leukocyte | 1502 | 0.52 | 0.48 | 0.69 | 0.62 | 0.00 | 0.83 | 0.68 | 0.73 | 0.91 |\n| plasma cell | 1503 | 0.52 | 0.62 | 0.80 | 0.81 | 0.00 | 0.76 | 0.65 | 0.67 | 0.79 |\n| lymphocyte | 1428 | 0.23 | 0.23 | 0.69 | 0.61 | 0.00 | 0.86 | 0.32 | 0.47 | 0.74 |\n| naive T cell | 1422 | 0.82 | 0.86 | 0.92 | 0.92 | 0.00 | 0.90 | 0.89 | 0.91 | 0.92 |\n| kidney loop of Henle thick ascending limb epithelial cell | 1413 | 0.92 | 0.92 | 0.94 | 0.88 | 0.00 | 0.90 | 0.95 | 0.96 | 0.96 |\n| immature B cell | 1268 | 0.70 | 0.70 | 0.77 | 0.78 | 0.00 | 0.70 | 0.62 | 0.75 | 0.89 |\n| alveolar macrophage | 1232 | 0.95 | 0.95 | 0.95 | 0.93 | 0.00 | 0.94 | 0.97 | 0.96 | 0.98 |\n| endothelial cell of hepatic sinusoid | 1168 | 0.96 | 0.95 | 0.88 | 0.88 | 0.00 | 0.94 | 0.97 | 0.97 | 0.98 |\n| lung macrophage | 1060 | 0.83 | 0.04 | 0.68 | 0.92 | 0.00 | 0.93 | 0.90 | 0.86 | 0.96 |\n| non-classical monocyte | 1045 | 0.56 | 0.68 | 0.85 | 0.82 | 0.00 | 0.91 | 0.84 | 0.78 | 0.86 |\n| endocardial cell | 940 | 0.92 | 0.91 | 0.93 | 0.88 | 0.00 | 0.79 | 0.96 | 0.87 | 0.96 |\n| double negative thymocyte | 866 | 0.57 | 0.00 | 0.63 | 0.76 | 0.00 | 0.84 | 0.79 | 0.82 | 0.91 |\n| late pro-B cell | 851 | 0.78 | 0.78 | 0.86 | 0.85 | 0.00 | 0.88 | 0.78 | 0.87 | 0.95 |\n| kidney collecting duct principal cell | 837 | 0.69 | 0.88 | 0.93 | 0.89 | 0.00 | 0.92 | 0.97 | 0.96 | 0.96 |\n| basal epithelial cell of tracheobronchial tree | 838 | 0.86 | 0.73 | 0.94 | 0.81 | 0.00 | 0.75 | 0.94 | 0.87 | 0.96 |\n| mesenchymal cell | 788 | 0.19 | 0.00 | 0.43 | 0.29 | 0.00 | 0.40 | 0.53 | 0.57 | 0.53 |\n| pancreatic A cell | 750 | 0.63 | 0.72 | 0.85 | 0.89 | 0.00 | 0.87 | 0.95 | 0.94 | 0.93 |\n| adventitial cell | 752 | 0.65 | 0.54 | 0.90 | 0.42 | 0.00 | 0.82 | 0.80 | 0.69 | 0.91 |\n| epithelial cell | 712 | 0.40 | 0.03 | 0.84 | 0.67 | 0.00 | 0.76 | 0.67 | 0.69 | 0.82 |\n| kidney distal convoluted tubule epithelial cell | 664 | 0.80 | 0.87 | 0.92 | 0.80 | 0.00 | 0.92 | 0.97 | 0.97 | 0.95 |\n| neutrophil | 632 | 0.50 | 0.47 | 0.76 | 0.79 | 0.00 | 0.58 | 0.68 | 0.63 | 0.80 |\n| pancreatic ductal cell | 594 | 0.98 | 0.78 | 0.98 | 0.95 | 0.00 | 0.96 | 0.97 | 0.97 | 0.98 |\n| myeloid dendritic cell | 564 | 0.34 | 0.52 | 0.82 | 0.60 | 0.00 | 0.78 | 0.78 | 0.65 | 0.75 |\n| astrocyte | 522 | 0.89 | 0.93 | 0.97 | 0.95 | 0.00 | 0.96 | 0.99 | 0.99 | 0.98 |\n| secretory cell | 511 | 0.26 | 0.33 | 0.81 | 0.69 | 0.00 | 0.85 | 0.93 | 0.89 | 0.93 |\n| myeloid leukocyte | 456 | 0.57 | 0.31 | 0.82 | 0.57 | 0.00 | 0.84 | 0.55 | 0.68 | 0.92 |\n| plasmatocyte | 448 | 0.57 | 0.81 | 0.90 | 0.84 | 0.00 | 0.90 | 0.94 | 0.87 | 0.96 |\n| brain pericyte | 428 | 0.00 | 0.73 | 0.67 | 0.87 | 0.00 | 0.94 | 0.96 | 0.92 | 0.99 |\n| neuron | 436 | 0.62 | 0.59 | 0.81 | 0.80 | 0.00 | 0.90 | 0.96 | 0.91 | 0.95 |\n| vein endothelial cell | 423 | 0.62 | 0.76 | 0.82 | 0.65 | 0.00 | 0.74 | 0.91 | 0.83 | 0.92 |\n| kidney collecting duct epithelial cell | 414 | 0.00 | 0.51 | 0.89 | 0.81 | 0.00 | 0.92 | 0.85 | 0.90 | 0.95 |\n| pancreatic D cell | 417 | 0.00 | 0.64 | 0.84 | 0.89 | 0.00 | 0.94 | 0.97 | 0.96 | 0.98 |\n| aortic endothelial cell | 420 | 0.16 | 0.00 | 0.30 | 0.39 | 0.00 | 0.71 | 0.39 | 0.32 | 0.68 |\n| brush cell | 377 | 0.82 | 0.60 | 0.94 | 0.91 | 0.00 | 0.92 | 0.86 | 0.85 | 0.91 |\n| erythroid progenitor cell, mammalian | 361 | 0.59 | 0.00 | 0.67 | 0.80 | 0.00 | 0.81 | 0.79 | 0.66 | 0.94 |\n| regular atrial cardiac myocyte | 362 | 0.00 | 0.40 | 0.69 | 0.70 | 0.00 | 0.58 | 0.70 | 0.75 | 0.86 |\n| kidney cortex artery cell | 341 | 0.00 | 0.83 | 0.76 | 0.52 | 0.00 | 0.62 | 0.83 | 0.67 | 0.84 |\n| erythrocyte | 312 | 0.61 | 0.47 | 0.71 | 0.86 | 0.00 | 0.84 | 0.83 | 0.87 | 0.94 |\n| mesangial cell | 322 | 0.00 | 0.69 | 0.69 | 0.69 | 0.00 | 0.85 | 0.88 | 0.80 | 0.95 |\n| kidney loop of Henle ascending limb epithelial cell | 312 | 0.47 | 0.59 | 0.69 | 0.56 | 0.00 | 0.74 | 0.86 | 0.85 | 0.78 |\n| cardiac muscle cell | 302 | 0.60 | 0.68 | 0.87 | 0.96 | 0.00 | 1.00 | 0.99 | 0.97 | 0.98 |\n| mature alpha-beta T cell | 293 | 0.00 | 0.08 | 0.40 | 0.41 | 0.00 | 0.68 | 0.62 | 0.62 | 0.88 |\n| basophil | 292 | 0.63 | 0.63 | 0.88 | 0.81 | 0.00 | 0.68 | 0.69 | 0.75 | 0.84 |\n| cardiac valve cell | 293 | 0.66 | 0.83 | 0.75 | 0.82 | 0.00 | 0.83 | 0.94 | 0.91 | 0.92 |\n| oligodendrocyte precursor cell | 283 | 0.91 | 0.96 | 0.98 | 0.97 | 0.00 | 0.97 | 1.00 | 0.99 | 1.00 |\n| Schwann cell | 252 | 0.72 | 0.71 | 0.82 | 0.86 | 0.00 | 0.92 | 0.86 | 0.82 | 0.82 |\n| pulmonary interstitial fibroblast | 248 | 0.87 | 0.82 | 0.91 | 0.87 | 0.00 | 0.91 | 0.96 | 0.96 | 0.96 |\n| smooth muscle cell of trachea | 227 | 0.00 | 0.04 | 0.46 | 0.57 | 0.00 | 0.64 | 0.65 | 0.74 | 0.85 |\n| granulocyte monocyte progenitor cell | 222 | 0.50 | 0.57 | 0.86 | 0.80 | 0.00 | 0.63 | 0.81 | 0.74 | 0.85 |\n| interneuron | 215 | 0.00 | 0.55 | 0.82 | 0.76 | 0.00 | 0.90 | 0.97 | 0.92 | 0.95 |\n| pancreatic PP cell | 205 | 0.00 | 0.06 | 0.69 | 0.78 | 0.00 | 0.80 | 0.92 | 0.93 | 0.92 |\n| smooth muscle cell of the pulmonary artery | 183 | 0.00 | 0.69 | 0.81 | 0.57 | 0.00 | 0.35 | 0.89 | 0.75 | 0.88 |\n| cell of skeletal muscle | 176 | 0.95 | 0.92 | 0.77 | 0.93 | 0.00 | 0.91 | 0.96 | 0.95 | 0.96 |\n| Langerhans cell | 157 | 0.83 | 0.80 | 0.90 | 0.79 | 0.00 | 0.65 | 0.87 | 0.78 | 0.96 |\n| brush cell of epithelium proper of large intestine | 165 | 0.00 | 0.70 | 0.85 | 0.85 | 0.00 | 0.81 | 0.99 | 0.95 | 0.95 |\n| stem cell of epidermis | 160 | 0.00 | 0.00 | 0.72 | 0.64 | 0.00 | 0.40 | 0.67 | 0.64 | 0.85 |\n| regulatory T cell | 157 | 0.00 | 0.03 | 0.23 | 0.30 | 0.00 | 0.41 | 0.46 | 0.38 | 0.76 |\n| epithelial cell of thymus | 149 | 0.00 | 0.01 | 0.75 | 0.53 | 0.00 | 0.39 | 0.79 | 0.61 | 0.92 |\n| enteroendocrine cell | 153 | 0.84 | 0.74 | 0.86 | 0.72 | 0.00 | 0.95 | 0.97 | 0.96 | 0.96 |\n| kidney capillary endothelial cell | 142 | 0.17 | 0.49 | 0.33 | 0.37 | 0.00 | 0.28 | 0.27 | 0.34 | 0.29 |\n| neuroepithelial stem cell | 135 | 0.21 | 0.11 | 0.88 | 0.67 | 0.00 | 0.60 | 0.88 | 0.67 | 0.87 |\n| macrophage dendritic cell progenitor | 139 | 0.00 | 0.29 | 0.81 | 0.79 | 0.00 | 0.79 | 0.73 | 0.75 | 0.90 |\n| DN3 thymocyte | 130 | 0.00 | 0.00 | 0.48 | 0.77 | 0.00 | 0.76 | 0.77 | 0.80 | 0.90 |\n| regular ventricular cardiac myocyte | 137 | 0.00 | 0.00 | 0.90 | 0.86 | 0.00 | 0.65 | 0.97 | 0.98 | 0.99 |\n| endothelial cell of lymphatic vessel | 135 | 0.00 | 0.45 | 0.95 | 0.57 | 0.00 | 0.44 | 0.74 | 0.51 | 0.91 |\n| ciliated columnar cell of tracheobronchial tree | 111 | 0.82 | 0.76 | 0.84 | 0.90 | 0.00 | 0.73 | 0.98 | 0.94 | 0.98 |\n| plasmacytoid dendritic cell | 109 | 0.00 | 0.29 | 0.87 | 0.67 | 0.00 | 0.46 | 0.66 | 0.55 | 0.78 |\n| dendritic cell | 97 | 0.00 | 0.35 | 0.77 | 0.54 | 0.00 | 0.53 | 0.80 | 0.62 | 0.83 |\n| medium spiny neuron | 89 | 0.00 | 0.00 | 0.86 | 0.79 | 0.00 | 0.89 | 1.00 | 0.99 | 0.99 |\n| pericyte | 83 | 0.00 | 0.85 | 0.83 | 0.77 | 0.00 | 0.91 | 0.86 | 0.90 | 0.93 |\n| neural stem cell | 87 | 0.00 | 0.65 | 0.85 | 0.87 | 0.00 | 0.93 | 0.96 | 0.97 | 0.98 |\n| kidney proximal straight tubule epithelial cell | 87 | 0.00 | 0.00 | 0.14 | 0.00 | 0.00 | 0.52 | 0.73 | 0.43 | 0.36 |\n| blood cell | 79 | 0.16 | 0.00 | 0.43 | 0.28 | 0.00 | 0.20 | 0.38 | 0.35 | 0.38 |\n| immature NK T cell | 76 | 0.00 | 0.09 | 0.32 | 0.38 | 0.00 | 0.50 | 0.53 | 0.50 | 0.72 |\n| cardiac neuron | 71 | 0.00 | 0.08 | 0.72 | 0.63 | 0.00 | 0.72 | 0.78 | 0.76 | 0.87 |\n| mast cell | 64 | 0.00 | 0.00 | 0.59 | 0.82 | 0.00 | 0.35 | 0.66 | 0.62 | 0.79 |\n| mucus secreting cell | 65 | 0.00 | 0.34 | 0.78 | 0.68 | 0.00 | 0.85 | 0.90 | 0.97 | 0.98 |\n| early pro-B cell | 66 | 0.00 | 0.48 | 0.76 | 0.72 | 0.00 | 0.39 | 0.79 | 0.68 | 0.87 |\n| pancreatic stellate cell | 60 | 0.00 | 0.61 | 0.93 | 0.40 | 0.00 | 0.36 | 0.79 | 0.81 | 0.96 |\n| ependymal cell | 50 | 0.00 | 0.59 | 0.95 | 0.89 | 0.00 | 0.65 | 1.00 | 1.00 | 1.00 |\n| Bergmann glial cell | 50 | 0.00 | 0.43 | 0.86 | 0.81 | 0.00 | 0.57 | 1.00 | 1.00 | 0.95 |\n| neuroendocrine cell | 41 | 0.00 | 0.00 | 0.20 | 0.49 | 0.00 | 0.70 | 0.98 | 0.77 | 0.59 |\n| fibrocyte | 39 | 0.00 | 0.00 | 0.30 | 0.31 | 0.00 | 0.41 | 0.80 | 0.76 | 0.77 |\n| hepatic stellate cell | 34 | 0.00 | 0.21 | 0.52 | 0.77 | 0.00 | 0.54 | 0.91 | 0.93 | 0.96 |\n| club cell | 30 | 0.11 | 0.45 | 0.19 | 0.11 | 0.00 | 0.17 | 0.19 | 0.18 | 0.16 |\n| respiratory basal cell | 32 | 0.00 | 0.00 | 0.95 | 0.75 | 0.00 | 0.26 | 0.96 | 0.89 | 0.95 |\n| kidney interstitial fibroblast | 15 | 0.00 | 0.00 | 0.97 | 0.77 | 0.00 | 0.40 | 0.75 | 0.83 | 1.00 |\n| lymphoid lineage restricted progenitor cell | 12 | 0.00 | 0.00 | 0.91 | 0.53 | 0.00 | 0.56 | 0.04 | 0.86 | 0.91 |\n| lung neuroendocrine cell | 8 | 0.00 | 0.00 | 0.82 | 0.22 | 0.00 | 0.64 | 0.21 | 1.00 | 0.86 |\n| kidney cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.16 | 0.05 | 0.50 | 0.50 |\n| duct epithelial cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.10 | 0.31 | 0.67 | 0.00 |"
|
4 |
+
}
|
celltypist.pkl
ADDED
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checkpoint
ADDED
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model_checkpoint_path: "OnClass"
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all_model_checkpoint_paths: "OnClass"
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harmony_knn_classifier.joblib
ADDED
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version https://git-lfs.github.com/spec/v1
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obo_dag.joblib
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popv_output/predictions.csv
ADDED
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See raw diff
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preprocessing.json
ADDED
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pynndescent_index.joblib
ADDED
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version https://git-lfs.github.com/spec/v1
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scanvi/model.pt
ADDED
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version https://git-lfs.github.com/spec/v1
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scvi/model.pt
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version https://git-lfs.github.com/spec/v1
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scvi_knn_classifier.joblib
ADDED
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version https://git-lfs.github.com/spec/v1
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svm_classifier_cuml.joblib
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:467d4bef2375577448bff7ae7960900c436fd221df3b2f8ed0b4ed7921f63216
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3 |
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size 2524091
|
xgboost_classifier.model
ADDED
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
1 |
+
version https://git-lfs.github.com/spec/v1
|
2 |
+
oid sha256:eb878b9d0ac28623558b145a5fb287d615e45b775decc2c33c79cfb7b11f1d41
|
3 |
+
size 39721543
|