popV/tabula_sapiens_All_Cells

Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models for plug-in use in your own analysis. Follow our tutorial to learn how to use the model for cell type annotation.

Model description

Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues.

Link to CELLxGENE: Link to the data in the CELLxGENE browser for interactive exploration of the data and download of the source data.

Training Code URL: Not provided by uploader.

Metrics

We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are computed on a 10% random subset of the data that was not used for training.

Cell Type	N cells	celltypist	knn bbknn	knn harmony	knn on scvi	onclass	scanvi	svm	xgboost	Consensus Prediction
B cell	11445	0.99	0.99	0.99	0.99	0.00	0.98	0.98	0.98	0.99
CD4-positive, alpha-beta T cell	9766	0.57	0.78	0.82	0.75	0.00	0.51	0.43	0.49	0.79
fibroblast	8344	0.79	0.79	0.94	0.70	0.00	0.60	0.65	0.64	0.89
CD8-positive, alpha-beta T cell	7611	0.71	0.78	0.81	0.74	0.00	0.76	0.57	0.62	0.80
neutrophil	6846	0.95	0.97	0.97	0.97	0.00	0.95	0.95	0.94	0.98
macrophage	6948	0.80	0.84	0.92	0.80	0.00	0.75	0.73	0.71	0.89
stromal cell of ovary	3441	0.94	0.94	0.91	0.66	0.00	0.50	0.96	0.92	0.97
endothelial cell	3271	0.67	0.74	0.91	0.62	0.00	0.52	0.71	0.64	0.83
basal cell	3333	0.84	0.85	0.89	0.69	0.00	0.64	0.87	0.83	0.93
plasma cell	2645	0.97	0.98	0.97	0.98	0.00	0.98	0.98	0.97	0.99
bladder urothelial cell	2720	0.96	0.97	0.97	0.58	0.00	0.46	0.98	0.97	0.98
monocyte	2566	0.47	0.37	0.78	0.45	0.00	0.24	0.50	0.54	0.62
mesenchymal stem cell	2321	0.84	0.83	0.90	0.42	0.00	0.01	0.89	0.82	0.93
smooth muscle cell	1764	0.67	0.67	0.88	0.67	0.00	0.67	0.74	0.73	0.80
classical monocyte	1837	0.52	0.62	0.77	0.43	0.00	0.56	0.58	0.67	0.73
luminal epithelial cell of mammary gland	1592	0.98	0.03	0.96	0.66	0.00	0.68	0.98	0.97	0.99
capillary endothelial cell	1532	0.67	0.69	0.87	0.58	0.00	0.52	0.71	0.67	0.79
erythrocyte	1495	0.97	0.96	0.95	0.97	0.00	0.97	0.96	0.96	0.97
natural killer cell	1434	0.74	0.74	0.74	0.70	0.00	0.74	0.68	0.70	0.76
enterocyte of epithelium proper of duodenum	1402	0.90	0.34	0.81	0.40	0.00	0.00	0.91	0.89	0.95
stratified squamous epithelial cell	1259	0.82	0.78	0.89	0.67	0.00	0.66	0.85	0.81	0.89
acinar cell of salivary gland	1236	0.88	0.82	0.94	0.53	0.00	0.36	0.94	0.92	0.97
pulmonary alveolar type 2 cell	1184	0.94	0.96	0.97	0.77	0.00	0.69	0.96	0.95	0.98
conjunctival epithelial cell	1154	0.92	0.75	0.86	0.57	0.00	0.31	0.95	0.88	0.95
pericyte	1066	0.56	0.55	0.81	0.54	0.00	0.56	0.61	0.66	0.74
luminal cell of prostate epithelium	1064	0.90	0.81	0.93	0.65	0.00	0.52	0.95	0.92	0.96
cardiac endothelial cell	1038	0.94	0.91	0.93	0.50	0.00	0.18	0.95	0.89	0.96
naive thymus-derived CD4-positive, alpha-beta T cell	982	0.23	0.02	0.32	0.07	0.00	0.24	0.22	0.29	0.27
kidney epithelial cell	882	0.98	0.92	0.95	0.45	0.00	0.59	0.99	0.98	0.99
hepatocyte	695	0.99	0.99	0.96	0.68	0.00	0.67	1.00	0.96	0.99
blood vessel smooth muscle cell	665	0.68	0.50	0.90	0.46	0.00	0.11	0.89	0.79	0.92
enterocyte of epithelium proper of ileum	648	0.93	0.01	0.70	0.26	0.00	0.00	0.97	0.93	0.96
T cell	670	0.42	0.22	0.58	0.16	0.00	0.28	0.34	0.39	0.55
mast cell	601	0.86	0.86	0.96	0.83	0.00	0.84	0.91	0.87	0.94
skeletal muscle satellite stem cell	577	0.85	0.92	0.96	0.83	0.00	0.80	0.94	0.91	0.96
regular atrial cardiac myocyte	561	0.82	0.63	0.78	0.19	0.00	0.27	0.87	0.90	0.90
pancreatic acinar cell	535	0.95	0.32	0.94	0.42	0.00	0.02	0.98	0.95	0.98
intermediate monocyte	554	0.30	0.15	0.58	0.26	0.00	0.22	0.36	0.47	0.53
mature NK T cell	547	0.43	0.40	0.54	0.33	0.00	0.46	0.35	0.42	0.57
mononuclear phagocyte	543	0.44	0.00	0.90	0.14	0.00	0.13	0.66	0.50	0.71
fibroblast of breast	532	0.93	0.00	0.95	0.40	0.00	0.48	0.85	0.63	0.94
vascular associated smooth muscle cell	526	0.66	0.04	0.74	0.18	0.00	0.42	0.61	0.64	0.71
vein endothelial cell	487	0.34	0.17	0.76	0.33	0.00	0.35	0.47	0.45	0.57
CD4-positive, alpha-beta thymocyte	503	0.38	0.00	0.61	0.23	0.00	0.25	0.40	0.38	0.59
enterocyte of epithelium of large intestine	437	0.69	0.27	0.58	0.33	0.00	0.25	0.80	0.83	0.79
myofibroblast cell	428	0.50	0.22	0.85	0.40	0.00	0.46	0.63	0.55	0.77
thymic fibroblast type 2	434	0.54	0.00	0.73	0.14	0.00	0.06	0.66	0.55	0.62
corneal epithelial cell	405	0.92	0.00	0.92	0.55	0.00	0.59	0.94	0.91	0.95
spermatid	416	0.91	0.00	0.96	0.88	0.00	0.95	0.99	0.96	0.99
duct epithelial cell	400	0.69	0.52	0.84	0.43	0.00	0.47	0.83	0.80	0.87
mesenchymal stem cell of adipose tissue	378	0.17	0.01	0.65	0.36	0.00	0.06	0.31	0.35	0.54
basal cell of prostate epithelium	336	0.72	0.09	0.87	0.46	0.00	0.37	0.84	0.76	0.83
endothelial cell of artery	369	0.43	0.42	0.75	0.48	0.00	0.52	0.66	0.55	0.73
stromal cell	362	0.43	0.05	0.44	0.44	0.00	0.38	0.76	0.71	0.82
thymic fibroblast type 1	322	0.00	0.01	0.85	0.19	0.00	0.00	0.53	0.50	0.31
pulmonary alveolar type 1 cell	313	0.97	0.93	0.96	0.79	0.00	0.92	0.98	0.93	0.98
spermatocyte	317	0.84	0.00	0.94	0.57	0.00	0.84	0.98	0.94	0.97
pancreatic ductal cell	267	0.89	0.39	0.92	0.64	0.00	0.11	0.97	0.90	0.96
regulatory T cell	261	0.08	0.00	0.24	0.04	0.00	0.21	0.17	0.18	0.32
ventricular cardiac muscle cell	249	0.21	0.18	0.70	0.25	0.00	0.26	0.77	0.79	0.71
endothelial cell of lymphatic vessel	256	0.63	0.57	0.85	0.56	0.00	0.52	0.61	0.57	0.68
hematopoietic precursor cell	217	0.61	0.69	0.78	0.72	0.00	0.52	0.63	0.62	0.80
retinal blood vessel endothelial cell	188	0.03	0.00	0.79	0.16	0.00	0.00	0.65	0.50	0.59
small intestine goblet cell	210	0.81	0.63	0.87	0.51	0.00	0.64	0.93	0.85	0.93
gamma-delta T cell	214	0.00	0.10	0.62	0.19	0.00	0.52	0.69	0.54	0.66
fibroblast of cardiac tissue	196	0.94	0.45	0.97	0.06	0.00	0.32	0.83	0.65	0.95
paneth cell of epithelium of small intestine	191	0.56	0.48	0.65	0.20	0.00	0.21	0.69	0.65	0.77
club cell	184	0.71	0.74	0.83	0.53	0.00	0.72	0.79	0.75	0.88
intestinal crypt stem cell of colon	165	0.63	0.64	0.55	0.29	0.00	0.06	0.79	0.79	0.81
progenitor cell of mammary luminal epithelium	169	0.99	0.00	0.99	0.97	0.00	0.97	0.96	0.91	0.99
epithelial cell	167	0.84	0.46	0.93	0.23	0.00	0.46	0.91	0.90	0.94
basophil	166	0.00	0.18	0.95	0.46	0.00	0.62	0.75	0.71	0.84
large intestine goblet cell	173	0.86	0.64	0.82	0.49	0.00	0.54	0.94	0.85	0.93
eye photoreceptor cell	150	0.90	0.91	0.93	0.95	0.00	0.88	0.96	0.97	0.96
epithelial cell of uterus	147	0.85	0.39	0.91	0.31	0.00	0.36	0.84	0.87	0.95
enterocyte of epithelium proper of small intestine	135	0.30	0.01	0.55	0.16	0.00	0.10	0.56	0.55	0.66
tissue-resident macrophage	149	0.48	0.00	0.80	0.24	0.00	0.22	0.45	0.51	0.72
acinar cell	127	0.83	0.67	0.87	0.72	0.00	0.44	0.92	0.83	0.94
non-classical monocyte	129	0.00	0.38	0.34	0.09	0.00	0.25	0.27	0.30	0.46
lung ciliated cell	113	0.62	0.53	0.97	0.66	0.00	0.79	0.91	0.91	0.91
activated CD8-positive, alpha-beta T cell	128	0.26	0.00	0.75	0.01	0.00	0.04	0.33	0.31	0.43
alveolar adventitial fibroblast	102	0.43	0.07	0.86	0.37	0.00	0.37	0.75	0.69	0.87
naive thymus-derived CD8-positive, alpha-beta T cell	124	0.15	0.00	0.38	0.07	0.00	0.14	0.17	0.13	0.34
adventitial cell	105	0.24	0.00	0.69	0.25	0.00	0.08	0.25	0.31	0.63
respiratory goblet cell	108	0.18	0.55	0.84	0.47	0.00	0.29	0.60	0.64	0.77
theca cell	125	0.00	0.03	0.82	0.52	0.00	0.64	0.78	0.60	0.82
myeloid leukocyte	107	0.15	0.00	0.64	0.11	0.00	0.09	0.18	0.16	0.46
keratocyte	87	0.00	0.00	0.50	0.08	0.00	0.20	0.37	0.31	0.31
enteroglial cell	105	0.54	0.80	0.96	0.73	0.00	0.84	0.94	0.78	0.89
erythroid progenitor cell	92	0.58	0.58	0.68	0.60	0.00	0.58	0.65	0.65	0.70
innate lymphoid cell	99	0.21	0.19	0.33	0.32	0.00	0.28	0.18	0.23	0.40
myometrial cell	99	0.48	0.00	0.83	0.48	0.00	0.39	0.62	0.65	0.84
endothelial cell of vascular tree	82	0.27	0.07	0.58	0.48	0.00	0.40	0.55	0.41	0.61
hematopoietic stem cell	89	0.61	0.62	0.69	0.71	0.00	0.69	0.76	0.70	0.79
salivary gland cell	84	0.00	0.00	0.85	0.49	0.00	0.36	0.65	0.58	0.85
granulocyte	74	0.20	0.00	0.56	0.35	0.00	0.17	0.25	0.20	0.58
CD8-positive, alpha-beta thymocyte	66	0.15	0.00	0.29	0.22	0.00	0.43	0.27	0.20	0.44
ciliated columnar cell of tracheobronchial tree	86	0.00	0.08	0.94	0.64	0.00	0.62	0.93	0.91	0.92
intrahepatic cholangiocyte	68	0.97	0.11	0.94	0.30	0.00	0.39	0.99	0.83	0.96
mural cell	68	0.31	0.23	0.92	0.14	0.00	0.32	0.61	0.48	0.69
intestinal crypt stem cell of small intestine	67	0.00	0.23	0.12	0.04	0.00	0.12	0.31	0.37	0.40
activated CD4-positive, alpha-beta T cell	61	0.05	0.00	0.28	0.06	0.00	0.15	0.10	0.10	0.19
myeloid dendritic cell	56	0.12	0.15	0.29	0.23	0.00	0.14	0.11	0.14	0.24
Mueller cell	44	0.53	0.51	0.61	0.67	0.00	0.17	0.83	0.89	0.86
fast muscle cell	40	0.42	0.42	0.88	0.61	0.00	0.72	0.77	0.76	0.86
platelet	45	0.89	0.86	0.90	0.94	0.00	0.63	0.88	0.69	0.89
myoepithelial cell	43	0.35	0.36	0.81	0.42	0.00	0.50	0.61	0.41	0.76
common myeloid progenitor	44	0.00	0.56	0.68	0.38	0.00	0.49	0.68	0.55	0.76
thymocyte	59	0.00	0.00	0.39	0.25	0.00	0.34	0.32	0.27	0.70
intestinal tuft cell	45	0.87	0.90	0.98	0.82	0.00	0.58	0.96	0.92	0.94
pancreatic stellate cell	44	0.00	0.00	0.93	0.33	0.00	0.03	0.60	0.40	0.68
tendon cell	32	0.00	0.06	0.40	0.24	0.00	0.12	0.42	0.23	0.48
muscle cell	47	0.51	0.00	0.93	0.84	0.00	0.78	0.76	0.83	0.93
microglial cell	40	0.11	0.00	0.59	0.08	0.00	0.05	0.25	0.13	0.32
enterocyte of epithelium proper of jejunum	46	0.00	0.00	0.10	0.16	0.00	0.03	0.58	0.41	0.60
mesothelial cell	33	0.53	0.60	0.85	0.65	0.00	0.45	0.64	0.60	0.70
colon endothelial cell	30	0.00	0.00	0.76	0.05	0.00	0.05	0.28	0.16	0.32
colon macrophage	30	0.00	0.00	0.63	0.00	0.00	0.04	0.20	0.19	0.17
serous cell of epithelium of trachea	25	0.00	0.00	0.78	0.36	0.00	0.20	0.42	0.49	0.83
ciliated epithelial cell	35	0.00	0.00	0.90	0.46	0.00	0.53	0.99	0.88	0.93
Schwann cell	36	0.00	0.46	0.87	0.32	0.00	0.34	0.77	0.70	0.85
supporting cell of vestibular epithelium	31	0.86	0.00	0.45	0.64	0.00	0.49	1.00	0.85	0.94
mucus secreting cell	30	0.00	0.07	0.91	0.35	0.00	0.35	0.67	0.62	0.87
enteroendocrine cell of small intestine	32	0.66	0.16	0.73	0.33	0.00	0.36	0.85	0.76	0.88
ovarian surface epithelial cell	19	0.00	0.47	0.82	0.16	0.00	0.27	0.84	0.67	0.83
transit amplifying cell of colon	22	0.00	0.30	0.39	0.06	0.00	0.08	0.60	0.38	0.56
glandular epithelial cell	25	0.00	0.14	0.65	0.18	0.00	0.33	0.94	0.62	0.81
melanocyte	19	0.00	0.32	0.59	0.12	0.00	0.21	0.68	0.73	0.84
tracheal goblet cell	32	0.00	0.37	0.64	0.57	0.00	0.30	0.78	0.54	0.74
hepatic stellate cell	16	0.56	0.00	0.69	0.00	0.00	0.03	0.50	0.35	0.67
bronchial smooth muscle cell	14	0.00	0.00	0.48	0.14	0.00	0.11	0.17	0.16	0.44
paneth cell of colon	24	0.00	0.27	0.45	0.47	0.00	0.15	0.68	0.32	0.81
tongue muscle cell	24	0.00	0.00	0.78	0.15	0.00	0.14	0.60	0.34	0.83
leukocyte	21	0.00	0.00	0.02	0.08	0.00	0.07	0.06	0.10	0.10
tuft cell of colon	16	0.00	0.10	0.64	0.19	0.00	0.47	0.86	0.63	0.83
slow muscle cell	17	0.00	0.26	0.82	0.25	0.00	0.55	0.77	0.68	0.91
ionocyte	12	0.00	0.28	0.80	0.38	0.00	0.41	0.85	0.56	0.91
connective tissue cell	21	0.00	0.00	0.95	0.00	0.00	0.13	0.48	0.25	0.76
neuro-medullary thymic epithelial cell	9	0.27	0.41	0.89	0.20	0.00	0.29	0.34	0.39	0.38
sebum secreting cell	10	0.00	0.01	0.75	0.33	0.00	0.04	0.78	0.49	0.90
endothelial cell of arteriole	17	0.00	0.00	0.81	0.00	0.00	0.00	0.52	0.25	0.64
male germ cell	9	0.00	0.00	0.94	0.00	0.00	0.34	0.95	0.73	0.94
type B pancreatic cell	9	0.00	0.20	0.95	0.74	0.00	0.39	1.00	0.89	1.00
hematopoietic cell	9	0.00	0.00	0.20	0.17	0.00	0.16	0.48	0.50	0.46
plasmacytoid dendritic cell	14	0.00	0.67	0.64	0.45	0.00	0.16	0.58	0.38	0.73
neuron	6	0.00	0.00	0.91	0.25	0.00	0.20	0.52	0.53	0.92
myeloid cell	6	0.00	0.00	0.00	0.00	0.00	0.00	0.32	0.11	0.40
myo-medullary thymic epithelial cell	10	0.00	0.00	0.95	0.67	0.00	0.43	0.82	0.67	0.67
Langerhans cell	4	0.00	0.40	1.00	0.22	0.00	0.07	0.18	0.20	0.67
interstitial cell of Cajal	6	0.00	0.00	1.00	0.00	0.00	0.19	0.27	0.43	1.00
retinal pigment epithelial cell	6	0.00	0.60	0.80	0.67	0.00	0.75	0.92	0.92	1.00
peritubular myoid cell	10	0.36	0.00	0.43	0.00	0.00	0.43	0.67	0.44	0.63
spermatogonium	7	0.00	0.00	0.44	0.00	0.00	0.24	0.86	0.67	0.73
retinal bipolar neuron	2	0.00	0.00	0.67	0.40	0.00	0.29	0.67	1.00	1.00
endothelial cell of venule	7	0.00	0.00	0.73	0.00	0.00	0.00	0.71	0.33	0.25
vestibular dark cell	5	0.00	0.00	0.00	0.00	0.00	0.04	0.89	0.67	0.00
pancreatic A cell	2	0.00	0.00	0.80	0.00	0.00	0.00	1.00	0.67	1.00
type L enteroendocrine cell	3	0.00	0.00	0.40	0.00	0.00	0.38	1.00	0.44	1.00
medullary thymic epithelial cell	3	0.00	0.00	0.80	0.00	0.00	0.03	0.86	0.40	1.00
adipocyte	4	0.00	0.00	0.29	0.00	0.00	0.00	0.46	0.00	0.40
transit amplifying cell of small intestine	2	0.00	0.00	0.00	0.00	0.00	0.00	0.33	0.00	0.00
taste receptor cell	4	0.00	0.00	0.67	0.00	0.00	0.27	0.33	0.09	0.67
enterochromaffin-like cell	1	0.00	0.00	0.00	0.00	0.00	0.40	1.00	0.40	1.00
enteroendocrine cell	4	0.00	0.00	1.00	0.44	0.00	0.31	0.67	0.50	0.75
pulmonary ionocyte	1	0.00	0.00	0.00	0.00	0.00	0.14	0.00	0.67	0.00
glial cell	1	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.00	0.00
oocyte	2	0.00	0.02	1.00	1.00	0.00	0.15	1.00	1.00	1.00
serous cell of epithelium of bronchus	2	0.00	0.00	0.67	0.40	0.00	0.09	0.67	0.67	0.67
radial glial cell	3	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.25	0.00
Leydig cell	1	0.00	0.00	0.00	0.00	0.00	0.00	0.67	0.33	0.00
pancreatic D cell	1	0.00	0.00	1.00	0.00	0.00	0.00	1.00	1.00	1.00
T follicular helper cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
retina horizontal cell	1	0.00	0.00	0.00	0.00	0.00	0.03	0.00	0.00	0.00
erythroid lineage cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
pancreatic PP cell	1	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
epithelial fate stem cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
mesenchymal cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00

The train accuracies are computed on the training data.

Cell Type	N cells	celltypist	knn bbknn	knn harmony	knn on scvi	onclass	scanvi	svm	xgboost	Consensus Prediction
B cell	103041	0.99	0.99	0.99	0.99	0.00	0.97	0.98	0.98	0.99
CD4-positive, alpha-beta T cell	87356	0.57	0.78	0.87	0.82	0.00	0.57	0.43	0.49	0.82
fibroblast	74984	0.78	0.75	0.97	0.84	0.00	0.85	0.66	0.65	0.93
CD8-positive, alpha-beta T cell	68662	0.72	0.77	0.87	0.82	0.00	0.75	0.57	0.63	0.83
neutrophil	62691	0.95	0.97	0.99	0.98	0.00	0.95	0.95	0.94	0.99
macrophage	62114	0.79	0.83	0.95	0.87	0.00	0.78	0.73	0.71	0.91
stromal cell of ovary	31562	0.94	0.70	0.94	0.84	0.00	0.95	0.96	0.93	0.98
endothelial cell	30425	0.69	0.70	0.96	0.82	0.00	0.77	0.72	0.66	0.91
basal cell	30188	0.85	0.80	0.94	0.82	0.00	0.83	0.87	0.83	0.94
plasma cell	24698	0.97	0.98	0.98	0.97	0.00	0.97	0.98	0.97	0.99
bladder urothelial cell	24521	0.97	0.96	0.98	0.76	0.00	0.92	0.98	0.97	0.99
monocyte	23187	0.45	0.30	0.86	0.72	0.00	0.56	0.51	0.56	0.72
mesenchymal stem cell	21176	0.84	0.74	0.95	0.68	0.00	0.93	0.90	0.81	0.95
smooth muscle cell	16656	0.68	0.64	0.93	0.85	0.00	0.85	0.75	0.75	0.88
classical monocyte	16363	0.52	0.56	0.84	0.73	0.00	0.71	0.59	0.67	0.78
luminal epithelial cell of mammary gland	13840	0.98	0.00	0.98	0.83	0.00	0.94	0.98	0.97	0.99
capillary endothelial cell	13764	0.68	0.57	0.93	0.80	0.00	0.78	0.71	0.68	0.84
erythrocyte	13116	0.97	0.96	0.98	0.98	0.00	0.97	0.96	0.96	0.98
natural killer cell	12793	0.73	0.74	0.83	0.80	0.00	0.74	0.70	0.70	0.77
enterocyte of epithelium proper of duodenum	12093	0.90	0.00	0.87	0.71	0.00	0.94	0.92	0.88	0.97
stratified squamous epithelial cell	11064	0.82	0.71	0.93	0.81	0.00	0.86	0.85	0.82	0.90
acinar cell of salivary gland	11001	0.88	0.71	0.97	0.78	0.00	0.93	0.94	0.91	0.98
pulmonary alveolar type 2 cell	10410	0.94	0.96	0.99	0.87	0.00	0.95	0.97	0.96	0.98
conjunctival epithelial cell	9930	0.92	0.70	0.91	0.73	0.00	0.94	0.94	0.87	0.96
pericyte	9818	0.57	0.50	0.90	0.76	0.00	0.72	0.62	0.68	0.82
luminal cell of prostate epithelium	9588	0.90	0.44	0.96	0.81	0.00	0.93	0.94	0.92	0.96
cardiac endothelial cell	9044	0.94	0.78	0.98	0.82	0.00	0.96	0.95	0.89	0.97
naive thymus-derived CD4-positive, alpha-beta T cell	8845	0.23	0.02	0.51	0.28	0.00	0.28	0.24	0.30	0.37
kidney epithelial cell	8393	0.97	0.17	0.97	0.82	0.00	0.98	0.99	0.98	0.99
hepatocyte	6719	0.99	0.98	0.98	0.87	0.00	0.98	0.99	0.97	1.00
blood vessel smooth muscle cell	5977	0.68	0.20	0.95	0.88	0.00	0.93	0.89	0.80	0.95
enterocyte of epithelium proper of ileum	5829	0.94	0.00	0.84	0.65	0.00	0.96	0.98	0.93	0.98
T cell	5617	0.40	0.17	0.70	0.41	0.00	0.39	0.34	0.39	0.62
mast cell	5620	0.85	0.84	0.97	0.93	0.00	0.93	0.91	0.90	0.96
skeletal muscle satellite stem cell	5591	0.87	0.93	0.98	0.91	0.00	0.96	0.94	0.91	0.97
regular atrial cardiac myocyte	5252	0.83	0.21	0.91	0.75	0.00	0.96	0.88	0.92	0.95
pancreatic acinar cell	4946	0.95	0.02	0.97	0.83	0.00	0.93	0.98	0.96	0.99
intermediate monocyte	4924	0.29	0.11	0.70	0.53	0.00	0.28	0.37	0.46	0.59
mature NK T cell	4847	0.42	0.40	0.69	0.56	0.00	0.51	0.40	0.48	0.64
mononuclear phagocyte	4793	0.43	0.00	0.96	0.54	0.00	0.81	0.67	0.52	0.92
fibroblast of breast	4738	0.95	0.00	0.99	0.74	0.00	0.85	0.87	0.67	0.98
vascular associated smooth muscle cell	4493	0.65	0.01	0.86	0.67	0.00	0.70	0.63	0.65	0.79
vein endothelial cell	4211	0.35	0.07	0.87	0.63	0.00	0.56	0.51	0.49	0.72
CD4-positive, alpha-beta thymocyte	4182	0.37	0.00	0.74	0.48	0.00	0.57	0.43	0.39	0.70
enterocyte of epithelium of large intestine	4130	0.71	0.23	0.75	0.61	0.00	0.85	0.82	0.85	0.85
myofibroblast cell	4008	0.51	0.13	0.91	0.72	0.00	0.73	0.64	0.58	0.85
thymic fibroblast type 2	3771	0.52	0.00	0.86	0.56	0.00	0.88	0.67	0.55	0.90
corneal epithelial cell	3782	0.93	0.00	0.95	0.85	0.00	0.94	0.95	0.93	0.96
spermatid	3593	0.91	0.00	0.99	0.97	0.00	0.98	0.99	0.97	0.99
duct epithelial cell	3489	0.67	0.34	0.92	0.71	0.00	0.78	0.83	0.80	0.91
mesenchymal stem cell of adipose tissue	3399	0.18	0.00	0.75	0.54	0.00	0.50	0.34	0.37	0.58
basal cell of prostate epithelium	3159	0.71	0.01	0.93	0.74	0.00	0.85	0.84	0.78	0.89
endothelial cell of artery	3101	0.42	0.28	0.85	0.65	0.00	0.65	0.64	0.54	0.78
stromal cell	3095	0.43	0.00	0.69	0.57	0.00	0.80	0.77	0.73	0.92
thymic fibroblast type 1	2948	0.00	0.00	0.92	0.44	0.00	0.87	0.56	0.51	0.87
pulmonary alveolar type 1 cell	2803	0.97	0.89	0.99	0.94	0.00	0.95	0.98	0.95	0.98
spermatocyte	2753	0.83	0.00	0.97	0.92	0.00	0.94	0.98	0.96	0.98
pancreatic ductal cell	2452	0.89	0.07	0.95	0.82	0.00	0.93	0.96	0.92	0.97
regulatory T cell	2388	0.08	0.00	0.39	0.24	0.00	0.26	0.19	0.21	0.45
ventricular cardiac muscle cell	2350	0.26	0.00	0.81	0.66	0.00	0.96	0.79	0.85	0.88
endothelial cell of lymphatic vessel	2182	0.65	0.48	0.95	0.74	0.00	0.65	0.65	0.64	0.78
hematopoietic precursor cell	1923	0.57	0.64	0.83	0.79	0.00	0.50	0.64	0.62	0.83
retinal blood vessel endothelial cell	1901	0.05	0.00	0.92	0.48	0.00	0.95	0.69	0.55	0.90
small intestine goblet cell	1834	0.83	0.49	0.93	0.82	0.00	0.85	0.94	0.89	0.93
gamma-delta T cell	1763	0.00	0.07	0.78	0.42	0.00	0.58	0.68	0.51	0.82
fibroblast of cardiac tissue	1751	0.95	0.18	0.98	0.54	0.00	0.83	0.81	0.66	0.98
paneth cell of epithelium of small intestine	1662	0.56	0.32	0.79	0.60	0.00	0.65	0.72	0.70	0.83
club cell	1563	0.70	0.70	0.91	0.70	0.00	0.72	0.80	0.77	0.90
intestinal crypt stem cell of colon	1567	0.64	0.47	0.79	0.63	0.00	0.77	0.84	0.84	0.90
progenitor cell of mammary luminal epithelium	1525	0.98	0.00	0.99	0.97	0.00	0.94	0.97	0.94	0.99
epithelial cell	1506	0.82	0.13	0.98	0.72	0.00	0.90	0.93	0.91	0.95
basophil	1503	0.00	0.00	0.96	0.81	0.00	0.81	0.78	0.75	0.93
large intestine goblet cell	1384	0.86	0.14	0.93	0.76	0.00	0.82	0.93	0.88	0.94
eye photoreceptor cell	1380	0.90	0.91	0.96	0.95	0.00	0.71	0.98	0.97	0.97
epithelial cell of uterus	1270	0.87	0.18	0.98	0.69	0.00	0.89	0.85	0.87	0.98
enterocyte of epithelium proper of small intestine	1280	0.31	0.00	0.79	0.57	0.00	0.79	0.66	0.68	0.81
tissue-resident macrophage	1206	0.45	0.00	0.85	0.56	0.00	0.70	0.42	0.52	0.76
acinar cell	1218	0.89	0.31	0.97	0.86	0.00	0.89	0.93	0.89	0.96
non-classical monocyte	1155	0.00	0.32	0.56	0.41	0.00	0.24	0.32	0.36	0.60
lung ciliated cell	1096	0.68	0.19	0.98	0.90	0.00	0.97	0.96	0.92	0.98
activated CD8-positive, alpha-beta T cell	1019	0.28	0.00	0.86	0.40	0.00	0.57	0.34	0.32	0.71
alveolar adventitial fibroblast	1011	0.44	0.02	0.94	0.62	0.00	0.58	0.78	0.71	0.94
naive thymus-derived CD8-positive, alpha-beta T cell	932	0.13	0.00	0.59	0.31	0.00	0.30	0.17	0.15	0.55
adventitial cell	940	0.21	0.00	0.88	0.55	0.00	0.35	0.27	0.34	0.71
respiratory goblet cell	932	0.17	0.38	0.90	0.69	0.00	0.62	0.62	0.67	0.84
theca cell	913	0.00	0.00	0.88	0.76	0.00	0.48	0.72	0.57	0.88
myeloid leukocyte	895	0.19	0.00	0.85	0.42	0.00	0.68	0.22	0.23	0.77
keratocyte	914	0.00	0.00	0.78	0.28	0.00	0.52	0.40	0.37	0.80
enteroglial cell	885	0.51	0.58	0.97	0.87	0.00	0.76	0.94	0.81	0.89
erythroid progenitor cell	879	0.60	0.54	0.82	0.80	0.00	0.76	0.74	0.73	0.80
innate lymphoid cell	867	0.21	0.10	0.56	0.44	0.00	0.59	0.22	0.26	0.49
myometrial cell	818	0.44	0.00	0.87	0.78	0.00	0.70	0.66	0.67	0.84
endothelial cell of vascular tree	793	0.32	0.01	0.82	0.59	0.00	0.69	0.61	0.49	0.73
hematopoietic stem cell	769	0.61	0.59	0.86	0.82	0.00	0.74	0.87	0.84	0.88
salivary gland cell	766	0.00	0.00	0.93	0.80	0.00	0.75	0.70	0.64	0.93
granulocyte	695	0.20	0.00	0.69	0.65	0.00	0.35	0.29	0.24	0.69
CD8-positive, alpha-beta thymocyte	665	0.17	0.00	0.58	0.44	0.00	0.54	0.44	0.32	0.72
ciliated columnar cell of tracheobronchial tree	626	0.00	0.01	0.97	0.83	0.00	0.88	0.95	0.90	0.98
intrahepatic cholangiocyte	597	0.96	0.07	0.97	0.83	0.00	0.97	0.98	0.87	0.98
mural cell	550	0.28	0.12	0.96	0.66	0.00	0.71	0.66	0.53	0.96
intestinal crypt stem cell of small intestine	520	0.00	0.21	0.46	0.29	0.00	0.36	0.47	0.54	0.64
activated CD4-positive, alpha-beta T cell	511	0.03	0.00	0.56	0.30	0.00	0.26	0.14	0.14	0.35
myeloid dendritic cell	515	0.12	0.05	0.60	0.43	0.00	0.18	0.16	0.21	0.31
Mueller cell	462	0.52	0.44	0.83	0.79	0.00	0.49	0.92	0.92	0.91
fast muscle cell	455	0.32	0.47	0.94	0.85	0.00	0.88	0.81	0.88	0.92
platelet	449	0.90	0.89	0.96	0.96	0.00	0.68	0.91	0.75	0.95
myoepithelial cell	443	0.41	0.19	0.92	0.77	0.00	0.65	0.70	0.51	0.89
common myeloid progenitor	412	0.00	0.37	0.84	0.75	0.00	0.71	0.88	0.79	0.92
thymocyte	396	0.00	0.00	0.65	0.46	0.00	0.56	0.40	0.36	0.88
intestinal tuft cell	403	0.81	0.77	0.97	0.86	0.00	0.90	0.97	0.97	0.97
pancreatic stellate cell	392	0.00	0.00	0.96	0.59	0.00	0.56	0.68	0.42	0.92
tendon cell	388	0.00	0.02	0.74	0.18	0.00	0.35	0.49	0.31	0.81
muscle cell	359	0.50	0.00	0.98	0.94	0.00	0.95	0.79	0.93	0.95
microglial cell	366	0.09	0.01	0.78	0.27	0.00	0.36	0.38	0.20	0.56
enterocyte of epithelium proper of jejunum	359	0.00	0.00	0.60	0.47	0.00	0.73	0.63	0.44	0.95
mesothelial cell	317	0.56	0.42	0.94	0.89	0.00	0.81	0.73	0.72	0.81
colon endothelial cell	318	0.00	0.00	0.88	0.38	0.00	0.65	0.45	0.31	0.95
colon macrophage	298	0.00	0.00	0.86	0.43	0.00	0.49	0.29	0.30	0.92
serous cell of epithelium of trachea	301	0.00	0.00	0.87	0.67	0.00	0.35	0.58	0.60	0.94
ciliated epithelial cell	285	0.00	0.00	0.97	0.83	0.00	0.84	0.99	0.92	0.99
Schwann cell	282	0.00	0.31	0.87	0.71	0.00	0.70	0.88	0.78	0.89
supporting cell of vestibular epithelium	239	0.85	0.00	0.72	0.78	0.00	0.86	1.00	0.87	0.99
mucus secreting cell	240	0.00	0.01	0.86	0.69	0.00	0.64	0.71	0.77	0.92
enteroendocrine cell of small intestine	232	0.51	0.07	0.88	0.76	0.00	0.53	0.88	0.84	0.92
ovarian surface epithelial cell	222	0.00	0.11	0.92	0.83	0.00	0.86	0.90	0.70	0.94
transit amplifying cell of colon	215	0.00	0.26	0.65	0.49	0.00	0.47	0.78	0.61	0.88
glandular epithelial cell	210	0.00	0.03	0.89	0.67	0.00	0.58	0.88	0.72	0.98
melanocyte	215	0.00	0.14	0.86	0.61	0.00	0.79	0.77	0.81	0.93
tracheal goblet cell	200	0.00	0.10	0.86	0.76	0.00	0.55	0.78	0.61	0.96
hepatic stellate cell	207	0.52	0.00	0.83	0.42	0.00	0.48	0.60	0.44	0.77
bronchial smooth muscle cell	206	0.00	0.00	0.78	0.50	0.00	0.45	0.46	0.46	0.78
paneth cell of colon	193	0.00	0.07	0.77	0.60	0.00	0.41	0.76	0.34	0.90
tongue muscle cell	178	0.00	0.00	0.89	0.54	0.00	0.55	0.80	0.42	0.94
leukocyte	180	0.00	0.00	0.62	0.09	0.00	0.39	0.28	0.19	0.71
tuft cell of colon	162	0.00	0.06	0.89	0.58	0.00	0.84	0.94	0.92	0.98
slow muscle cell	157	0.00	0.12	0.88	0.74	0.00	0.75	0.88	0.91	0.96
ionocyte	148	0.00	0.10	0.80	0.62	0.00	0.51	0.83	0.76	0.93
connective tissue cell	131	0.00	0.00	0.97	0.83	0.00	0.28	0.49	0.28	0.98
neuro-medullary thymic epithelial cell	126	0.28	0.22	0.87	0.75	0.00	0.36	0.46	0.55	0.46
sebum secreting cell	125	0.00	0.02	0.92	0.25	0.00	0.65	0.86	0.67	0.93
endothelial cell of arteriole	115	0.00	0.00	0.95	0.36	0.00	0.20	0.74	0.44	0.97
male germ cell	107	0.00	0.00	0.91	0.81	0.00	0.51	1.00	0.80	1.00
type B pancreatic cell	93	0.00	0.00	0.93	0.86	0.00	0.65	1.00	0.94	1.00
hematopoietic cell	91	0.00	0.00	0.81	0.63	0.00	0.26	0.61	0.49	0.80
plasmacytoid dendritic cell	85	0.00	0.31	0.69	0.67	0.00	0.15	0.63	0.51	0.73
neuron	76	0.00	0.00	0.97	0.76	0.00	0.58	0.61	0.79	0.92
myeloid cell	75	0.00	0.00	0.58	0.03	0.00	0.49	0.41	0.27	0.87
myo-medullary thymic epithelial cell	67	0.00	0.00	0.96	0.85	0.00	0.91	0.81	0.93	0.99
Langerhans cell	72	0.00	0.10	0.83	0.57	0.00	0.11	0.34	0.44	0.82
interstitial cell of Cajal	65	0.00	0.00	0.93	0.57	0.00	0.56	0.26	0.49	0.94
retinal pigment epithelial cell	61	0.00	0.00	0.96	0.90	0.00	0.90	1.00	0.94	0.99
peritubular myoid cell	57	0.18	0.00	0.78	0.50	0.00	0.30	0.67	0.43	0.77
spermatogonium	57	0.00	0.00	0.69	0.58	0.00	0.44	0.93	0.78	0.90
retinal bipolar neuron	59	0.00	0.08	0.85	0.69	0.00	0.70	0.83	0.91	0.93
endothelial cell of venule	45	0.00	0.00	0.93	0.27	0.00	0.22	0.87	0.62	0.96
vestibular dark cell	44	0.00	0.00	0.54	0.23	0.00	0.71	0.99	0.85	0.98
pancreatic A cell	46	0.00	0.00	0.90	0.88	0.00	0.65	1.00	1.00	1.00
type L enteroendocrine cell	41	0.00	0.05	0.89	0.56	0.00	0.86	0.96	0.94	0.97
medullary thymic epithelial cell	40	0.00	0.00	0.62	0.29	0.00	0.44	0.93	0.76	0.91
adipocyte	34	0.00	0.00	0.73	0.41	0.00	0.44	0.60	0.67	0.84
transit amplifying cell of small intestine	32	0.00	0.00	0.41	0.48	0.00	0.16	0.82	0.74	0.89
taste receptor cell	28	0.00	0.00	0.86	0.64	0.00	0.38	0.85	0.33	0.95
enterochromaffin-like cell	26	0.00	0.03	0.88	0.63	0.00	0.71	0.96	0.90	0.96
enteroendocrine cell	21	0.00	0.00	0.93	0.59	0.00	0.51	0.91	0.88	0.95
pulmonary ionocyte	24	0.00	0.00	0.73	0.59	0.00	0.35	1.00	0.91	0.98
glial cell	19	0.00	0.00	0.71	0.41	0.00	0.29	0.46	0.33	0.78
oocyte	16	0.00	0.00	0.91	0.79	0.00	0.17	0.89	0.91	0.91
serous cell of epithelium of bronchus	13	0.00	0.00	0.83	0.35	0.00	0.23	0.84	0.87	1.00
radial glial cell	10	0.00	0.00	0.00	0.00	0.00	0.11	0.22	0.31	0.38
Leydig cell	9	0.00	0.00	0.31	0.29	0.00	0.07	0.82	0.31	0.82
pancreatic D cell	8	0.00	0.00	0.55	0.86	0.00	0.25	1.00	0.89	1.00
T follicular helper cell	6	0.00	0.00	0.00	0.00	0.00	0.02	0.86	0.32	0.55
retina horizontal cell	4	0.00	0.00	0.00	0.00	0.00	0.05	1.00	1.00	0.57
erythroid lineage cell	2	0.00	0.00	0.00	0.00	0.00	0.33	1.00	0.67	0.00
pancreatic PP cell	1	0.00	0.00	0.00	0.00	0.00	0.67	1.00	1.00	1.00
epithelial fate stem cell	2	0.00	0.00	0.00	0.00	0.00	0.01	1.00	1.00	0.00
mesenchymal cell	2	0.00	0.00	0.00	0.00	0.00	0.01	0.22	0.31	0.00

References

Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues, The Tabula Sapiens Consortium; bioRxiv, doi: https://doi.org/10.1101/2024.12.03.626516